SEQF5726.1|RJMZ01000003.1	CCTyper	repeat_region	363599	363778	180	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_1;Genome_ID=SEQF5726.1;Note=Predictor:CCtyper;Start:363599;End:363778;Consensus_Repeat:GTTTCCGTCCCCTCTCGGGGTGAATGGGGGTTCTTAC;Number_of_Repeats:3;Repeat_Length:36.0;Average_Spacer_Length:36.0;Repeat_Identity:70.3;Spacer_Identity:44.0;Spacer_Length_Sem:1.0;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.528;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	direct_repeat	363599	363635	37	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_1_REPEAT1;Parent=SEQF5726.1|RJMZ01000003.1-7_1;Note=GTTTCCGTCCCCTCTCGGGGTGAATGGGGGTTCTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	binding_site	363636	363672	37	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_1_SPACER1;Parent=SEQF5726.1|RJMZ01000003.1-7_1;Note=CTCAATCAGTAGTTGGGTATGACCTGAAGCCAGATAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	direct_repeat	363673	363709	37	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_1_REPEAT2;Parent=SEQF5726.1|RJMZ01000003.1-7_1;Note=GTTTCCGTTCCCTCTCGAGGTGACTGGGGTGTCTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	binding_site	363710	363744	35	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_1_SPACER2;Parent=SEQF5726.1|RJMZ01000003.1-7_1;Note=GATTGATGAAAAGATACATAACGCACAAGGTAATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	direct_repeat	363745	363778	34	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_1_REPEAT3;Parent=SEQF5726.1|RJMZ01000003.1-7_1;Note=GTTTCCGTACCCTCGCGAGGAGACTGAGGTTTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	repeat_region	364912	365244	333	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_4;Genome_ID=SEQF5726.1;Note=Predictor:CCtyper;Start:364912;End:365244;Consensus_Repeat:GTTTCCGTCCCCTCTCGAGGTAACTGGGGTTTCTTAC;Number_of_Repeats:5;Repeat_Length:35.8;Average_Spacer_Length:38.5;Repeat_Identity:80.2;Spacer_Identity:45.7;Spacer_Length_Sem:1.6;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.999;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	direct_repeat	364912	364948	37	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_4_REPEAT1;Parent=SEQF5726.1|RJMZ01000003.1-7_4;Note=GTTTCCGCCCCCTCCCGAGGTGACTGGGGGGTCTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	binding_site	364949	364985	37	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_4_SPACER1;Parent=SEQF5726.1|RJMZ01000003.1-7_4;Note=GTTTTGATAAATGAAGAATAATCAATTGTTAAGTCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	direct_repeat	364986	365019	34	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_4_REPEAT2;Parent=SEQF5726.1|RJMZ01000003.1-7_4;Note=GTTTCCGTCCCCTCCCGAGGTAACTGGAGTTTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	binding_site	365020	365059	40	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_4_SPACER2;Parent=SEQF5726.1|RJMZ01000003.1-7_4;Note=TACTTGCTATTGGAGTTTTTGTATACAGTTTGTTGTTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	direct_repeat	365060	365096	37	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_4_REPEAT3;Parent=SEQF5726.1|RJMZ01000003.1-7_4;Note=GTTTCCGTCCCCTCTCGAGGTAACTGGGGTTTCTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	binding_site	365097	365131	35	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_4_SPACER3;Parent=SEQF5726.1|RJMZ01000003.1-7_4;Note=AAACTTCATAAATTCTACGATTTTATTATCATTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	direct_repeat	365132	365165	34	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_4_REPEAT4;Parent=SEQF5726.1|RJMZ01000003.1-7_4;Note=GTTTCCGTCCCCTCCCGAGGTGAATGGGGTTTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	binding_site	365166	365207	42	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_4_SPACER4;Parent=SEQF5726.1|RJMZ01000003.1-7_4;Note=TACTGAAATCACTTTCTGAATCATTAACAATTCTTACTGTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	direct_repeat	365208	365244	37	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_4_REPEAT5;Parent=SEQF5726.1|RJMZ01000003.1-7_4;Note=GTTTCCGTCCCCTTTCGAGGTAACTGGGGTTTCTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	repeat_region	366093	366346	254	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_6;Genome_ID=SEQF5726.1;Note=Predictor:CCtyper;Start:366093;End:366346;Consensus_Repeat:GTTTCCGCCCCCTCTCGAGGGGACTGGGGTGTCTTAC;Number_of_Repeats:4;Repeat_Length:35.5;Average_Spacer_Length:37.3;Repeat_Identity:80.0;Spacer_Identity:45.5;Spacer_Length_Sem:2.0;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:III-D;Subtype_Probability:0.358;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	direct_repeat	366093	366129	37	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_6_REPEAT1;Parent=SEQF5726.1|RJMZ01000003.1-7_6;Note=GTTTCCGCCCCCTCTCGAGGGGACTGGGGTGTCTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	binding_site	366130	366163	34	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_6_SPACER1;Parent=SEQF5726.1|RJMZ01000003.1-7_6;Note=ACTTTATTACATTCAGAGGGAAGAAGCAGAGCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	direct_repeat	366164	366197	34	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_6_REPEAT2;Parent=SEQF5726.1|RJMZ01000003.1-7_6;Note=GTTTCCGTCCCCTCTCGAGGTGACTGGGGTTTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	binding_site	366198	366238	41	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_6_SPACER2;Parent=SEQF5726.1|RJMZ01000003.1-7_6;Note=TACAAGTAGTCACAGAGCGTGAAAAGTATGACCTCAATTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	direct_repeat	366239	366272	34	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_6_REPEAT3;Parent=SEQF5726.1|RJMZ01000003.1-7_6;Note=GTTTCCGTACCCTCCCGAGGTGACTGGGGTTTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	binding_site	366273	366309	37	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_6_SPACER3;Parent=SEQF5726.1|RJMZ01000003.1-7_6;Note=TACCAATCCTTTCTGATCCAAAAGTCAACGGTGTTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	direct_repeat	366310	366346	37	+	.	ID=SEQF5726.1|RJMZ01000003.1-7_6_REPEAT4;Parent=SEQF5726.1|RJMZ01000003.1-7_6;Note=GTTTCCGTCCCCTCCCGAGGTGACTGGGGGGTCTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5726.1|RJMZ01000003.1	CCTyper	OPERON	355726	369311	13586	-	.	ID=SEQF5726.1|RJMZ01000003.1@8;Genome_ID=SEQF5726.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=18.0;Genes=Csm6_1_CAS-III,Csm5gr7_0_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm2gr11_7_CAS-III-A,Cas10_1_CAS-III,Cas6_0_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,Cas1_0_CAS-I-II-III-IV-V-VI,Cas1_0_CAS-I-II-III-IV-V-VI,Csm6_7_CAS-III;Positions=318,319,320,321,322,323,324,325,326,327,329;E-values=1.00e-42,7.30e-36,3.80e-40,2.20e-68,6.20e-19,2.50e-146,1.30e-26,5.10e-20,1.50e-47,1.60e-22,5.00e-17;CoverageSeq=0.743,0.745,0.977,0.835,0.526,0.787,0.755,0.624,0.917,0.872,0.898;CoverageHMM=0.883,0.737,0.975,0.967,0.827,0.919,0.876,0.848,0.521,0.385,0.509;Strand_Interference=-1;Strand_Adaptation=NA
SEQF5726.1|RJMZ01000003.1	CCTyper	CDS	360310	362607	766	-	.	ID=SEQF5726.1|RJMZ01000003.1_323_cas;Genome_ID=SEQF5726.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=-;E-value=2.5000000000000002e-146;Score=486.0;Coverage_Seq=0.7872062663185379;Coverage_Hmm=0.918960244648318
SEQF5726.1|RJMZ01000003.1	CCTyper	CDS	366779	367321	181	-	.	ID=SEQF5726.1|RJMZ01000003.1_326_cas;Genome_ID=SEQF5726.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.4999999999999998e-47;Score=159.4;Coverage_Seq=0.9171270718232044;Coverage_Hmm=0.5205047318611987
SEQF5726.1|RJMZ01000003.1	CCTyper	CDS	367276	367698	141	-	.	ID=SEQF5726.1|RJMZ01000003.1_327_cas;Genome_ID=SEQF5726.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.6000000000000002e-22;Score=77.1;Coverage_Seq=0.8723404255319149;Coverage_Hmm=0.38485804416403785
SEQF5726.1|RJMZ01000003.1	CCTyper	CDS	366450	366776	109	-	.	ID=SEQF5726.1|RJMZ01000003.1_325_cas;Genome_ID=SEQF5726.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=5.1e-20;Score=68.6;Coverage_Seq=0.6238532110091743;Coverage_Hmm=0.8481012658227848
SEQF5726.1|RJMZ01000003.1	CCTyper	CDS	362588	363322	245	-	.	ID=SEQF5726.1|RJMZ01000003.1_324_cas;Genome_ID=SEQF5726.1;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.3e-26;Score=91.4;Coverage_Seq=0.7551020408163265;Coverage_Hmm=0.8762886597938144
SEQF5726.1|RJMZ01000003.1	CCTyper	CDS	359790	360308	173	-	.	ID=SEQF5726.1|RJMZ01000003.1_322_cas;Genome_ID=SEQF5726.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=-;E-value=6.2e-19;Score=66.2;Coverage_Seq=0.5260115606936416;Coverage_Hmm=0.8272727272727273
SEQF5726.1|RJMZ01000003.1	CCTyper	CDS	359083	359793	237	-	.	ID=SEQF5726.1|RJMZ01000003.1_321_cas;Genome_ID=SEQF5726.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=-;E-value=2.2e-68;Score=227.4;Coverage_Seq=0.8354430379746836;Coverage_Hmm=0.9674418604651163
SEQF5726.1|RJMZ01000003.1	CCTyper	CDS	358163	359071	303	-	.	ID=SEQF5726.1|RJMZ01000003.1_320_cas;Genome_ID=SEQF5726.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=-;E-value=3.8e-40;Score=135.2;Coverage_Seq=0.976897689768977;Coverage_Hmm=0.9746031746031746
SEQF5726.1|RJMZ01000003.1	CCTyper	CDS	357039	358166	376	-	.	ID=SEQF5726.1|RJMZ01000003.1_319_cas;Genome_ID=SEQF5726.1;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=-;E-value=7.3e-36;Score=121.3;Coverage_Seq=0.7446808510638298;Coverage_Hmm=0.736986301369863
SEQF5726.1|RJMZ01000003.1	CCTyper	CDS	355726	357042	439	-	.	ID=SEQF5726.1|RJMZ01000003.1_318_cas;Genome_ID=SEQF5726.1;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=-;E-value=9.999999999999999e-43;Score=143.5;Coverage_Seq=0.7425968109339408;Coverage_Hmm=0.8833333333333333
SEQF5726.1|RJMZ01000003.1	CCTyper	CDS	368694	369311	206	-	.	ID=SEQF5726.1|RJMZ01000003.1_329_cas;Genome_ID=SEQF5726.1;Feature_type=CDS;Product=Cas Prediction : Csm6_7_CAS-III;coding_strand=-;E-value=5e-17;Score=58.9;Coverage_Seq=0.8980582524271845;Coverage_Hmm=0.5093833780160858