SEQF5728.1|RJNC01000032.1	CCTyper	repeat_region	8522	9281	760	+	.	ID=SEQF5728.1|RJNC01000032.1_1;Genome_ID=SEQF5728.1;Note=Predictor:CCtyper;Start:8522;End:9281;Consensus_Repeat:GTTTCCGTCCCCTCTCGAGGAGACTGGGGTTTCTAA;Number_of_Repeats:11;Repeat_Length:36;Average_Spacer_Length:36.4;Repeat_Identity:76.5;Spacer_Identity:44.7;Spacer_Length_Sem:0.4;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.994;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5728.1|RJNC01000032.1	CCTyper	direct_repeat	8522	8557	36	+	.	ID=SEQF5728.1|RJNC01000032.1_1_REPEAT1;Parent=SEQF5728.1|RJNC01000032.1_1;Note=GTTCCCGTACCCTCTCGAGTAGACTGGGGGTTCTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5728.1|RJNC01000032.1	CCTyper	binding_site	8558	8595	38	+	.	ID=SEQF5728.1|RJNC01000032.1_1_SPACER1;Parent=SEQF5728.1|RJNC01000032.1_1;Note=CGCAGAAGATGGATAATCTTATTGACTTTTACAAGTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5728.1|RJNC01000032.1	CCTyper	direct_repeat	8596	8631	36	+	.	ID=SEQF5728.1|RJNC01000032.1_1_REPEAT2;Parent=SEQF5728.1|RJNC01000032.1_1;Note=GTTTCCGCCCCCTCCCGAGGCTACTAGTGGTTCTTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5728.1|RJNC01000032.1	CCTyper	binding_site	8632	8668	37	+	.	ID=SEQF5728.1|RJNC01000032.1_1_SPACER2;Parent=SEQF5728.1|RJNC01000032.1_1;Note=CACATTAATGAACCATCTAGGAGTGGGGCACTTGAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5728.1|RJNC01000032.1	CCTyper	direct_repeat	8669	8704	36	+	.	ID=SEQF5728.1|RJNC01000032.1_1_REPEAT3;Parent=SEQF5728.1|RJNC01000032.1_1;Note=GTTTCCGTACCCTCCCGAGGTAACTGGGGGTTATTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5728.1|RJNC01000032.1	CCTyper	binding_site	8705	8739	35	+	.	ID=SEQF5728.1|RJNC01000032.1_1_SPACER3;Parent=SEQF5728.1|RJNC01000032.1_1;Note=CCTTGAGAACACTTTTGATGAAAAGCATCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5728.1|RJNC01000032.1	CCTyper	direct_repeat	8740	8775	36	+	.	ID=SEQF5728.1|RJNC01000032.1_1_REPEAT4;Parent=SEQF5728.1|RJNC01000032.1_1;Note=GTTCCCGTACCCTCCCGAGCTGAATGGGGGGTCTTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5728.1|RJNC01000032.1	CCTyper	binding_site	8776	8810	35	+	.	ID=SEQF5728.1|RJNC01000032.1_1_SPACER4;Parent=SEQF5728.1|RJNC01000032.1_1;Note=CAGGAATACAGCTTTGAGCGTGAGATTGTAGTAGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5728.1|RJNC01000032.1	CCTyper	direct_repeat	8811	8846	36	+	.	ID=SEQF5728.1|RJNC01000032.1_1_REPEAT5;Parent=SEQF5728.1|RJNC01000032.1_1;Note=GTTTCCGTCCCCTCTCGAGGCGGCTGGGGGTTATTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5728.1|RJNC01000032.1	CCTyper	binding_site	8847	8885	39	+	.	ID=SEQF5728.1|RJNC01000032.1_1_SPACER5;Parent=SEQF5728.1|RJNC01000032.1_1;Note=CGGTGTGCTGAAATCAGATGAAGAGTTTTTCAAACTCTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5728.1|RJNC01000032.1	CCTyper	direct_repeat	8886	8921	36	+	.	ID=SEQF5728.1|RJNC01000032.1_1_REPEAT6;Parent=SEQF5728.1|RJNC01000032.1_1;Note=GTTTCCGTCCCCTCTCGAGGTGATTGGGGTTTCTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5728.1|RJNC01000032.1	CCTyper	binding_site	8922	8957	36	+	.	ID=SEQF5728.1|RJNC01000032.1_1_SPACER6;Parent=SEQF5728.1|RJNC01000032.1_1;Note=TCCACGCTACAGTCAGAATCCTAATGATACCAAAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5728.1|RJNC01000032.1	CCTyper	direct_repeat	8958	8993	36	+	.	ID=SEQF5728.1|RJNC01000032.1_1_REPEAT7;Parent=SEQF5728.1|RJNC01000032.1_1;Note=GTTTCCGTCCCCTCTCGAGGTGATTGGGGTTTCTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5728.1|RJNC01000032.1	CCTyper	binding_site	8994	9030	37	+	.	ID=SEQF5728.1|RJNC01000032.1_1_SPACER7;Parent=SEQF5728.1|RJNC01000032.1_1;Note=CAAAAAGAGCGTTTCATTTATGAAACATATATGTCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5728.1|RJNC01000032.1	CCTyper	direct_repeat	9031	9066	36	+	.	ID=SEQF5728.1|RJNC01000032.1_1_REPEAT8;Parent=SEQF5728.1|RJNC01000032.1_1;Note=GTTTCCGTCCCCTCTCGAGGTGATTGGGGTTTCTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5728.1|RJNC01000032.1	CCTyper	binding_site	9067	9102	36	+	.	ID=SEQF5728.1|RJNC01000032.1_1_SPACER8;Parent=SEQF5728.1|RJNC01000032.1_1;Note=CGCAACTGAAGACAACTCTGGCGTAGACTTCTCTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5728.1|RJNC01000032.1	CCTyper	direct_repeat	9103	9138	36	+	.	ID=SEQF5728.1|RJNC01000032.1_1_REPEAT9;Parent=SEQF5728.1|RJNC01000032.1_1;Note=GTTTCCGTCCCCTCTCGAGGAGACTGGGGTTTCTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5728.1|RJNC01000032.1	CCTyper	binding_site	9139	9173	35	+	.	ID=SEQF5728.1|RJNC01000032.1_1_SPACER9;Parent=SEQF5728.1|RJNC01000032.1_1;Note=CCAAAACCAGAAGAAGTATTCACAATTCTTGGTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5728.1|RJNC01000032.1	CCTyper	direct_repeat	9174	9209	36	+	.	ID=SEQF5728.1|RJNC01000032.1_1_REPEAT10;Parent=SEQF5728.1|RJNC01000032.1_1;Note=GTTTCCGTCCCCTCTCGAGGAGACTGGGGTTTCTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5728.1|RJNC01000032.1	CCTyper	binding_site	9210	9245	36	+	.	ID=SEQF5728.1|RJNC01000032.1_1_SPACER10;Parent=SEQF5728.1|RJNC01000032.1_1;Note=CCAACAATCGTCCTTCCTTTTGCAGCAGCTGGTCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5728.1|RJNC01000032.1	CCTyper	direct_repeat	9246	9281	36	+	.	ID=SEQF5728.1|RJNC01000032.1_1_REPEAT11;Parent=SEQF5728.1|RJNC01000032.1_1;Note=GTTTCCGTCCCCTCTCGAGGAGACTGGGGTTTCTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5728.1|RJNC01000032.1	CCTyper	OPERON	682	12338	11657	-	.	ID=SEQF5728.1|RJNC01000032.1@1;Genome_ID=SEQF5728.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=80%;Complete_Adaptation=NA;Best_type=III-A;Best_score=14.0;Genes=Csm5gr7_0_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Cas10_1_CAS-III,Cas6_0_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,Cas1_0_CAS-I-II-III-IV-V-VI,Csm6_7_CAS-III;Positions=2,3,4,5,6,9,10,12;E-values=2.30e-35,4.50e-40,2.00e-68,3.50e-145,1.10e-26,8.90e-20,1.60e-79,2.10e-29;CoverageSeq=0.768,0.977,0.835,0.71,0.755,0.624,0.949,0.969;CoverageHMM=0.77,0.975,0.967,0.914,0.876,0.848,0.994,0.676;Strand_Interference=-1;Strand_Adaptation=NA
SEQF5728.1|RJNC01000032.1	CCTyper	CDS	3445	5991	849	-	.	ID=SEQF5728.1|RJNC01000032.1_5_cas;Genome_ID=SEQF5728.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=-;E-value=3.5e-145;Score=482.2;Coverage_Seq=0.7102473498233216;Coverage_Hmm=0.9143730886850153
SEQF5728.1|RJNC01000032.1	CCTyper	CDS	9715	10716	334	-	.	ID=SEQF5728.1|RJNC01000032.1_10_cas;Genome_ID=SEQF5728.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.6e-79;Score=264.4;Coverage_Seq=0.9491017964071856;Coverage_Hmm=0.9936908517350158
SEQF5728.1|RJNC01000032.1	CCTyper	CDS	9386	9712	109	-	.	ID=SEQF5728.1|RJNC01000032.1_9_cas;Genome_ID=SEQF5728.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=8.9e-20;Score=67.8;Coverage_Seq=0.6238532110091743;Coverage_Hmm=0.8481012658227848
SEQF5728.1|RJNC01000032.1	CCTyper	CDS	5972	6706	245	-	.	ID=SEQF5728.1|RJNC01000032.1_6_cas;Genome_ID=SEQF5728.1;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.1e-26;Score=91.5;Coverage_Seq=0.7551020408163265;Coverage_Hmm=0.8762886597938144
SEQF5728.1|RJNC01000032.1	CCTyper	CDS	2738	3448	237	-	.	ID=SEQF5728.1|RJNC01000032.1_4_cas;Genome_ID=SEQF5728.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=-;E-value=2e-68;Score=227.5;Coverage_Seq=0.8354430379746836;Coverage_Hmm=0.9674418604651163
SEQF5728.1|RJNC01000032.1	CCTyper	CDS	1818	2726	303	-	.	ID=SEQF5728.1|RJNC01000032.1_3_cas;Genome_ID=SEQF5728.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=-;E-value=4.5e-40;Score=134.9;Coverage_Seq=0.976897689768977;Coverage_Hmm=0.9746031746031746
SEQF5728.1|RJNC01000032.1	CCTyper	CDS	682	1821	380	-	.	ID=SEQF5728.1|RJNC01000032.1_2_cas;Genome_ID=SEQF5728.1;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=-;E-value=2.3e-35;Score=119.6;Coverage_Seq=0.7684210526315789;Coverage_Hmm=0.7698630136986301
SEQF5728.1|RJNC01000032.1	CCTyper	CDS	11577	12338	254	-	.	ID=SEQF5728.1|RJNC01000032.1_12_cas;Genome_ID=SEQF5728.1;Feature_type=CDS;Product=Cas Prediction : Csm6_7_CAS-III;coding_strand=-;E-value=2.1e-29;Score=99.6;Coverage_Seq=0.968503937007874;Coverage_Hmm=0.675603217158177