SEQF5743.1|RQZI01000018.1	CCTyper	repeat_region	7547	8886	1340	+	.	ID=SEQF5743.1|RQZI01000018.1_1;Genome_ID=SEQF5743.1;Note=Predictor:CCtyper;Start:7547;End:8886;Consensus_Repeat:GTTTCCGTCCCCTCCCGAGGTGA;Number_of_Repeats:19;Repeat_Length:23;Average_Spacer_Length:50.2;Repeat_Identity:79.2;Spacer_Identity:49.4;Spacer_Length_Sem:0.6;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.947;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	direct_repeat	7547	7569	23	+	.	ID=SEQF5743.1|RQZI01000018.1_1_REPEAT1;Parent=SEQF5743.1|RQZI01000018.1_1;Note=GTTTCCGTACCCTCTCGAGTTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	binding_site	7570	7617	48	+	.	ID=SEQF5743.1|RQZI01000018.1_1_SPACER1;Parent=SEQF5743.1|RQZI01000018.1_1;Note=ATGGAGGTTCTTACGGTTTAACCCAGAATTTAAAGAGTGGAATTACTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	direct_repeat	7618	7640	23	+	.	ID=SEQF5743.1|RQZI01000018.1_1_REPEAT2;Parent=SEQF5743.1|RQZI01000018.1_1;Note=GTTTCCGTACCCTCTCGAGAACG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	binding_site	7641	7688	48	+	.	ID=SEQF5743.1|RQZI01000018.1_1_SPACER2;Parent=SEQF5743.1|RQZI01000018.1_1;Note=CTAGGGCGCTTACGATGGTTTTGACTGGACAGAAAACAGTATTCCAGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	direct_repeat	7689	7711	23	+	.	ID=SEQF5743.1|RQZI01000018.1_1_REPEAT3;Parent=SEQF5743.1|RQZI01000018.1_1;Note=GTTTCCGTACCCTCGCGAGGTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	binding_site	7712	7759	48	+	.	ID=SEQF5743.1|RQZI01000018.1_1_SPACER3;Parent=SEQF5743.1|RQZI01000018.1_1;Note=CTGGGGGGGCTTACTGCGCAGTTTATTGGTAAACGCGAAGAAGTTCTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	direct_repeat	7760	7782	23	+	.	ID=SEQF5743.1|RQZI01000018.1_1_REPEAT4;Parent=SEQF5743.1|RQZI01000018.1_1;Note=GTTTCCGTACCCTACCGAGGTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	binding_site	7783	7834	52	+	.	ID=SEQF5743.1|RQZI01000018.1_1_SPACER4;Parent=SEQF5743.1|RQZI01000018.1_1;Note=CTGGGGGGGGCTTACATAAAATCTGGGAGCGTGGAGCACTTGATGTCAAAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	direct_repeat	7835	7857	23	+	.	ID=SEQF5743.1|RQZI01000018.1_1_REPEAT5;Parent=SEQF5743.1|RQZI01000018.1_1;Note=GTTTCCGTACCCTCGCGAGGCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	binding_site	7858	7904	47	+	.	ID=SEQF5743.1|RQZI01000018.1_1_SPACER5;Parent=SEQF5743.1|RQZI01000018.1_1;Note=GGGGTTATTACTTGGTATTTTGCGACACCTATGCAGGTGTCTTTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	direct_repeat	7905	7927	23	+	.	ID=SEQF5743.1|RQZI01000018.1_1_REPEAT6;Parent=SEQF5743.1|RQZI01000018.1_1;Note=GTTTCCGTACCCTCGCGGGGTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	binding_site	7928	7975	48	+	.	ID=SEQF5743.1|RQZI01000018.1_1_SPACER6;Parent=SEQF5743.1|RQZI01000018.1_1;Note=ATGGGGATTCTTACAGAGGAAGGTGGTGAGAGCTGATGTTTTTAGCTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	direct_repeat	7976	7998	23	+	.	ID=SEQF5743.1|RQZI01000018.1_1_REPEAT7;Parent=SEQF5743.1|RQZI01000018.1_1;Note=GTTTCCGCCCCCTCTCGAGGTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	binding_site	7999	8048	50	+	.	ID=SEQF5743.1|RQZI01000018.1_1_SPACER7;Parent=SEQF5743.1|RQZI01000018.1_1;Note=CTAGGGGTTCTTACAAAATATTGAGATAGCTATGAAAGAAAGTCTATCTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	direct_repeat	8049	8071	23	+	.	ID=SEQF5743.1|RQZI01000018.1_1_REPEAT8;Parent=SEQF5743.1|RQZI01000018.1_1;Note=GTTTCCGTACCCTCCCGAGGTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	binding_site	8072	8121	50	+	.	ID=SEQF5743.1|RQZI01000018.1_1_SPACER8;Parent=SEQF5743.1|RQZI01000018.1_1;Note=ATGGGGATTCTTAGGGAGCAGAAAATGGGCGAAAGATTAGTAGTAGATAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	direct_repeat	8122	8144	23	+	.	ID=SEQF5743.1|RQZI01000018.1_1_REPEAT9;Parent=SEQF5743.1|RQZI01000018.1_1;Note=GTTTCCGTCCCCTCTCGAGGTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	binding_site	8145	8192	48	+	.	ID=SEQF5743.1|RQZI01000018.1_1_SPACER9;Parent=SEQF5743.1|RQZI01000018.1_1;Note=ATGGGGATTCTTACCAGAGACCAGCTTTTAATGACCGTGGGCGGATTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	direct_repeat	8193	8215	23	+	.	ID=SEQF5743.1|RQZI01000018.1_1_REPEAT10;Parent=SEQF5743.1|RQZI01000018.1_1;Note=GTTTCCGTCCCCTCCCGAGGTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	binding_site	8216	8268	53	+	.	ID=SEQF5743.1|RQZI01000018.1_1_SPACER10;Parent=SEQF5743.1|RQZI01000018.1_1;Note=CTGGGGATTCTTACTTTGATTTATCAGGTATTAACGATCAAACACTACTTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	direct_repeat	8269	8291	23	+	.	ID=SEQF5743.1|RQZI01000018.1_1_REPEAT11;Parent=SEQF5743.1|RQZI01000018.1_1;Note=GTTTCCGTCCCTTTTCAAGGTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	binding_site	8292	8342	51	+	.	ID=SEQF5743.1|RQZI01000018.1_1_SPACER11;Parent=SEQF5743.1|RQZI01000018.1_1;Note=TTGGGGGTTCTTACAATTACTAGCGGAGAATACAACGATTATAGGCAGCTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	direct_repeat	8343	8365	23	+	.	ID=SEQF5743.1|RQZI01000018.1_1_REPEAT12;Parent=SEQF5743.1|RQZI01000018.1_1;Note=GTTTCCGTCCCCTCTCGAGGTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	binding_site	8366	8416	51	+	.	ID=SEQF5743.1|RQZI01000018.1_1_SPACER12;Parent=SEQF5743.1|RQZI01000018.1_1;Note=ATGGGGGGTCTTACAGAACCTAAGAAATGAAGATGACATGACTGGATGGGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	direct_repeat	8417	8439	23	+	.	ID=SEQF5743.1|RQZI01000018.1_1_REPEAT13;Parent=SEQF5743.1|RQZI01000018.1_1;Note=GTTTCCGTCCCCTCCCGAGGTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	binding_site	8440	8491	52	+	.	ID=SEQF5743.1|RQZI01000018.1_1_SPACER13;Parent=SEQF5743.1|RQZI01000018.1_1;Note=CTAGGGGTTCTTACGCAAAAAGTAGATGAATTGCTAGATAGTGGAGGAGTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	direct_repeat	8492	8514	23	+	.	ID=SEQF5743.1|RQZI01000018.1_1_REPEAT14;Parent=SEQF5743.1|RQZI01000018.1_1;Note=GTTTCCGCCCCCTCACGAGGTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	binding_site	8515	8569	55	+	.	ID=SEQF5743.1|RQZI01000018.1_1_SPACER14;Parent=SEQF5743.1|RQZI01000018.1_1;Note=CTGGGGTTTCTTACCTATTTATCAGGAGTTTTGATAAATGAAGAATAATCAACTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	direct_repeat	8570	8592	23	+	.	ID=SEQF5743.1|RQZI01000018.1_1_REPEAT15;Parent=SEQF5743.1|RQZI01000018.1_1;Note=GTTTCCGTACCCTTTCGAGGTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	binding_site	8593	8646	54	+	.	ID=SEQF5743.1|RQZI01000018.1_1_SPACER15;Parent=SEQF5743.1|RQZI01000018.1_1;Note=CTGGGGTTTCTTACTGTTCTTATTGGGATCACTAGTGTCGCTTGTATCGGACTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	direct_repeat	8647	8669	23	+	.	ID=SEQF5743.1|RQZI01000018.1_1_REPEAT16;Parent=SEQF5743.1|RQZI01000018.1_1;Note=GTTTCCGCCCCCTCGCGAGGTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	binding_site	8670	8715	46	+	.	ID=SEQF5743.1|RQZI01000018.1_1_SPACER16;Parent=SEQF5743.1|RQZI01000018.1_1;Note=CTGGGGGTCTTACAAAAAATTATGTACTAATGATTGCTAACGACTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	direct_repeat	8716	8738	23	+	.	ID=SEQF5743.1|RQZI01000018.1_1_REPEAT17;Parent=SEQF5743.1|RQZI01000018.1_1;Note=GTTTCCGTACCCTTCCGAGGTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	binding_site	8739	8790	52	+	.	ID=SEQF5743.1|RQZI01000018.1_1_SPACER17;Parent=SEQF5743.1|RQZI01000018.1_1;Note=ATGGGGGGTCTTACATAAGAAAGATGTGACTGACGTTCGTGTTCTAAACTCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	direct_repeat	8791	8813	23	+	.	ID=SEQF5743.1|RQZI01000018.1_1_REPEAT18;Parent=SEQF5743.1|RQZI01000018.1_1;Note=GTTTCCGTCCCCTCCCGAGGTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	binding_site	8814	8863	50	+	.	ID=SEQF5743.1|RQZI01000018.1_1_SPACER18;Parent=SEQF5743.1|RQZI01000018.1_1;Note=CTGGGGTTTCTAACCTTACTGGAGGGGTACGACAACTATGATGACGCTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	direct_repeat	8864	8886	23	+	.	ID=SEQF5743.1|RQZI01000018.1_1_REPEAT19;Parent=SEQF5743.1|RQZI01000018.1_1;Note=ATTTCCGTACCCTCTCGAGGTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5743.1|RQZI01000018.1	CCTyper	OPERON	3	11955	11953	-	.	ID=SEQF5743.1|RQZI01000018.1@1;Genome_ID=SEQF5743.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=18.0;Genes=Csm6_1_CAS-III,Csm5gr7_0_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm2gr11_7_CAS-III-A,Cas10_1_CAS-III,Cas6_0_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,Cas1_0_CAS-I-II-III-IV-V-VI,Csm6_7_CAS-III;Positions=1,2,3,4,5,6,7,9,11,13;E-values=8.40e-35,7.50e-35,9.90e-42,1.90e-68,3.70e-19,1.10e-145,2.30e-26,9.20e-20,4.50e-48,2.20e-32;CoverageSeq=0.691,0.737,0.977,0.84,0.686,0.775,0.751,0.624,0.892,0.969;CoverageHMM=0.631,0.729,0.975,0.972,0.945,0.908,0.871,0.848,0.549,0.676;Strand_Interference=-1;Strand_Adaptation=NA
SEQF5743.1|RQZI01000018.1	CCTyper	CDS	4326	6632	769	-	.	ID=SEQF5743.1|RQZI01000018.1_6_cas;Genome_ID=SEQF5743.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=-;E-value=1.1e-145;Score=483.9;Coverage_Seq=0.7750325097529259;Coverage_Hmm=0.908256880733945
SEQF5743.1|RQZI01000018.1	CCTyper	CDS	9521	10105	195	-	.	ID=SEQF5743.1|RQZI01000018.1_11_cas;Genome_ID=SEQF5743.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=4.5000000000000005e-48;Score=161.1;Coverage_Seq=0.8923076923076924;Coverage_Hmm=0.5488958990536278
SEQF5743.1|RQZI01000018.1	CCTyper	CDS	9004	9330	109	-	.	ID=SEQF5743.1|RQZI01000018.1_9_cas;Genome_ID=SEQF5743.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=9.2e-20;Score=67.8;Coverage_Seq=0.6238532110091743;Coverage_Hmm=0.8481012658227848
SEQF5743.1|RQZI01000018.1	CCTyper	CDS	6613	7347	245	-	.	ID=SEQF5743.1|RQZI01000018.1_7_cas;Genome_ID=SEQF5743.1;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=2.3e-26;Score=90.6;Coverage_Seq=0.7510204081632653;Coverage_Hmm=0.8711340206185567
SEQF5743.1|RQZI01000018.1	CCTyper	CDS	3791	4306	172	-	.	ID=SEQF5743.1|RQZI01000018.1_5_cas;Genome_ID=SEQF5743.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=-;E-value=3.7e-19;Score=66.9;Coverage_Seq=0.686046511627907;Coverage_Hmm=0.9454545454545454
SEQF5743.1|RQZI01000018.1	CCTyper	CDS	3084	3794	237	-	.	ID=SEQF5743.1|RQZI01000018.1_4_cas;Genome_ID=SEQF5743.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=-;E-value=1.8999999999999998e-68;Score=227.6;Coverage_Seq=0.8396624472573839;Coverage_Hmm=0.9720930232558139
SEQF5743.1|RQZI01000018.1	CCTyper	CDS	2164	3072	303	-	.	ID=SEQF5743.1|RQZI01000018.1_3_cas;Genome_ID=SEQF5743.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=-;E-value=9.9e-42;Score=140.4;Coverage_Seq=0.976897689768977;Coverage_Hmm=0.9746031746031746
SEQF5743.1|RQZI01000018.1	CCTyper	CDS	1037	2167	377	-	.	ID=SEQF5743.1|RQZI01000018.1_2_cas;Genome_ID=SEQF5743.1;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=-;E-value=7.5e-35;Score=118.0;Coverage_Seq=0.7374005305039788;Coverage_Hmm=0.7287671232876712
SEQF5743.1|RQZI01000018.1	CCTyper	CDS	3	1040	346	-	.	ID=SEQF5743.1|RQZI01000018.1_1_cas;Genome_ID=SEQF5743.1;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=-;E-value=8.4e-35;Score=117.4;Coverage_Seq=0.6907514450867052;Coverage_Hmm=0.6305555555555555
SEQF5743.1|RQZI01000018.1	CCTyper	CDS	11194	11955	254	-	.	ID=SEQF5743.1|RQZI01000018.1_13_cas;Genome_ID=SEQF5743.1;Feature_type=CDS;Product=Cas Prediction : Csm6_7_CAS-III;coding_strand=-;E-value=2.2e-32;Score=109.4;Coverage_Seq=0.968503937007874;Coverage_Hmm=0.675603217158177