SEQF5781.1|LR698954.1	CCTyper	repeat_region	2265855	2267474	1620	+	.	ID=SEQF5781.1|LR698954.1_1;Genome_ID=SEQF5781.1;Note=Predictor:CCtyper;Start:2265855;End:2267474;Consensus_Repeat:GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Number_of_Repeats:25;Repeat_Length:36;Average_Spacer_Length:30;Repeat_Identity:91.6;Spacer_Identity:40.4;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.994;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2265855	2265890	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT1;Parent=SEQF5781.1|LR698954.1_1;Note=CACTGAAGTTTTTTTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2265891	2265920	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER1;Parent=SEQF5781.1|LR698954.1_1;Note=TATTCAAACTGCATAGCAACTTTTCCAAGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2265921	2265956	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT2;Parent=SEQF5781.1|LR698954.1_1;Note=ATTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2265957	2265986	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER2;Parent=SEQF5781.1|LR698954.1_1;Note=GAGGCATGTTAGACGTCATATTTGCTGAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2265987	2266022	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT3;Parent=SEQF5781.1|LR698954.1_1;Note=CCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2266023	2266052	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER3;Parent=SEQF5781.1|LR698954.1_1;Note=TCTCGACAACAACCCGTTTTGGCACCACAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2266053	2266088	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT4;Parent=SEQF5781.1|LR698954.1_1;Note=GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2266089	2266118	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER4;Parent=SEQF5781.1|LR698954.1_1;Note=TGAAATAATTGTTGACACGTGAGAACACAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2266119	2266154	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT5;Parent=SEQF5781.1|LR698954.1_1;Note=GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2266155	2266184	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER5;Parent=SEQF5781.1|LR698954.1_1;Note=ACTGGCATCAATCATCATGAAGTATGCGAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2266185	2266220	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT6;Parent=SEQF5781.1|LR698954.1_1;Note=GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2266221	2266250	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER6;Parent=SEQF5781.1|LR698954.1_1;Note=TTAGTGGCAGAGAGGTAATGATGATCACAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2266251	2266286	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT7;Parent=SEQF5781.1|LR698954.1_1;Note=GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2266287	2266316	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER7;Parent=SEQF5781.1|LR698954.1_1;Note=GCATATAGCTTGATATTGGCCGCAAGCTCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2266317	2266352	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT8;Parent=SEQF5781.1|LR698954.1_1;Note=GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2266353	2266382	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER8;Parent=SEQF5781.1|LR698954.1_1;Note=TTTCTGTCGGGTTTGTGGAATGGCACTGTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2266383	2266418	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT9;Parent=SEQF5781.1|LR698954.1_1;Note=GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2266419	2266448	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER9;Parent=SEQF5781.1|LR698954.1_1;Note=GTCTAGCCCGAGAAGTTCCGCGGCTTTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2266449	2266484	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT10;Parent=SEQF5781.1|LR698954.1_1;Note=GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2266485	2266514	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER10;Parent=SEQF5781.1|LR698954.1_1;Note=CATAAGGTGGCAGCGGCCATTTGTGTTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2266515	2266550	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT11;Parent=SEQF5781.1|LR698954.1_1;Note=GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2266551	2266580	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER11;Parent=SEQF5781.1|LR698954.1_1;Note=TTTAAATGCGTATTTTCTTTTCTCAACTGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2266581	2266616	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT12;Parent=SEQF5781.1|LR698954.1_1;Note=GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2266617	2266646	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER12;Parent=SEQF5781.1|LR698954.1_1;Note=CGCAGTCTTGCAAGCCGTAATGCTCGATCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2266647	2266682	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT13;Parent=SEQF5781.1|LR698954.1_1;Note=GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2266683	2266712	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER13;Parent=SEQF5781.1|LR698954.1_1;Note=CCCATAGGCCTAGCTGTCGCCCGTAAGGCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2266713	2266748	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT14;Parent=SEQF5781.1|LR698954.1_1;Note=GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2266749	2266778	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER14;Parent=SEQF5781.1|LR698954.1_1;Note=ACAGCCGTCTTGATCTTGTCAGCATCACCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2266779	2266814	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT15;Parent=SEQF5781.1|LR698954.1_1;Note=GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2266815	2266844	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER15;Parent=SEQF5781.1|LR698954.1_1;Note=GGGGCTTCTGCAATCTGGAATGCCCTTGGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2266845	2266880	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT16;Parent=SEQF5781.1|LR698954.1_1;Note=GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2266881	2266910	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER16;Parent=SEQF5781.1|LR698954.1_1;Note=TAGAATACTACCTTTTGGCACAATATTATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2266911	2266946	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT17;Parent=SEQF5781.1|LR698954.1_1;Note=GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2266947	2266976	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER17;Parent=SEQF5781.1|LR698954.1_1;Note=TCAATCGTCATGCCAAGCGGCATAGCACCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2266977	2267012	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT18;Parent=SEQF5781.1|LR698954.1_1;Note=GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2267013	2267042	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER18;Parent=SEQF5781.1|LR698954.1_1;Note=TAGTGATCATATTCATGCAACACAAACGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2267043	2267078	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT19;Parent=SEQF5781.1|LR698954.1_1;Note=GCTCTTGAACTGATTAATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2267079	2267108	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER19;Parent=SEQF5781.1|LR698954.1_1;Note=TTGACAAGTCAAAGTGCTCATACAAGTATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2267109	2267144	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT20;Parent=SEQF5781.1|LR698954.1_1;Note=GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2267145	2267174	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER20;Parent=SEQF5781.1|LR698954.1_1;Note=TGAACTCATCGCTTACCGGCAACCAGTCAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2267175	2267210	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT21;Parent=SEQF5781.1|LR698954.1_1;Note=GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2267211	2267240	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER21;Parent=SEQF5781.1|LR698954.1_1;Note=GGTGGCATCACAGAAGCAACCGAAACAATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2267241	2267276	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT22;Parent=SEQF5781.1|LR698954.1_1;Note=GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2267277	2267306	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER22;Parent=SEQF5781.1|LR698954.1_1;Note=AAGTGGTAAGGTCCCCAAAGATTCGATGAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2267307	2267342	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT23;Parent=SEQF5781.1|LR698954.1_1;Note=GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2267343	2267372	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER23;Parent=SEQF5781.1|LR698954.1_1;Note=AGCATCCTATATTTCCATGAATACTGATGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2267373	2267408	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT24;Parent=SEQF5781.1|LR698954.1_1;Note=GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	binding_site	2267409	2267438	30	+	.	ID=SEQF5781.1|LR698954.1_1_SPACER24;Parent=SEQF5781.1|LR698954.1_1;Note=AAGCAATCCAGAAACTCGGGATCGTTTCTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	direct_repeat	2267439	2267474	36	+	.	ID=SEQF5781.1|LR698954.1_1_REPEAT25;Parent=SEQF5781.1|LR698954.1_1;Note=GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5781.1|LR698954.1	CCTyper	OPERON	2267495	2273657	6163	-	.	ID=SEQF5781.1|LR698954.1@41;Genome_ID=SEQF5781.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Csn2_3_CAS-II-A,Cas2_9_CAS-I-II-III-IV-V-VI,Cas1_4_CAS-I-II-III-IV-V-VI,Cas9_0_II;Positions=2118,2119,2120,2121;E-values=3.80e-63,9.00e-54,5.20e-79,6.20e-163;CoverageSeq=0.965,0.99,0.807,0.752;CoverageHMM=0.995,1.0,0.996,0.977;Strand_Interference=-1;Strand_Adaptation=-1
SEQF5781.1|LR698954.1	CCTyper	CDS	2268455	2269450	332	-	.	ID=SEQF5781.1|LR698954.1_2120_cas;Genome_ID=SEQF5781.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=5.2e-79;Score=262.6;Coverage_Seq=0.8072289156626506;Coverage_Hmm=0.9963636363636363
SEQF5781.1|LR698954.1	CCTyper	CDS	2268172	2268477	102	-	.	ID=SEQF5781.1|LR698954.1_2119_cas;Genome_ID=SEQF5781.1;Feature_type=CDS;Product=Cas Prediction : Cas2_9_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=9e-54;Score=177.3;Coverage_Seq=0.9901960784313726;Coverage_Hmm=1.0
SEQF5781.1|LR698954.1	CCTyper	CDS	2269566	2273657	1364	-	.	ID=SEQF5781.1|LR698954.1_2121_cas;Genome_ID=SEQF5781.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=-;E-value=6.2e-163;Score=541.5;Coverage_Seq=0.7521994134897361;Coverage_Hmm=0.9771084337349397
SEQF5781.1|LR698954.1	CCTyper	CDS	2267495	2268175	227	-	.	ID=SEQF5781.1|LR698954.1_2118_cas;Genome_ID=SEQF5781.1;Feature_type=CDS;Product=Cas Prediction : Csn2_3_CAS-II-A;coding_strand=-;E-value=3.8e-63;Score=210.4;Coverage_Seq=0.9647577092511013;Coverage_Hmm=0.9954337899543378