SEQF5835.1|CP024138.1	CCTyper	repeat_region	1112471	1112926	456	+	.	ID=SEQF5835.1|CP024138.1_1;Genome_ID=SEQF5835.1;Note=Predictor:CCtyper;Start:1112471;End:1112926;Consensus_Repeat:GAGTTCCCCACGTCAGCGGGGATAAACCG;Number_of_Repeats:8;Repeat_Length:29;Average_Spacer_Length:32;Repeat_Identity:89.7;Spacer_Identity:42.3;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: I-E;Cas_Subtype_Prediction:I-E;Subtype_Probability:0.987;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	direct_repeat	1112471	1112499	29	+	.	ID=SEQF5835.1|CP024138.1_1_REPEAT1;Parent=SEQF5835.1|CP024138.1_1;Note=GAGTTCCCCACGTCAGCGGGGATAAACCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	binding_site	1112500	1112531	32	+	.	ID=SEQF5835.1|CP024138.1_1_SPACER1;Parent=SEQF5835.1|CP024138.1_1;Note=GCTCCGCCGGTTTGATCTCCGGTTTGCGCTGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	direct_repeat	1112532	1112560	29	+	.	ID=SEQF5835.1|CP024138.1_1_REPEAT2;Parent=SEQF5835.1|CP024138.1_1;Note=GAGTTCCCCACGTCAGCGGGGATAAACCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	binding_site	1112561	1112592	32	+	.	ID=SEQF5835.1|CP024138.1_1_SPACER2;Parent=SEQF5835.1|CP024138.1_1;Note=GCAATTAATTTAGTTCCAGATGCTGCGAAAGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	direct_repeat	1112593	1112621	29	+	.	ID=SEQF5835.1|CP024138.1_1_REPEAT3;Parent=SEQF5835.1|CP024138.1_1;Note=GAGTTCCCCACGTCAGCGGGGATAAACCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	binding_site	1112622	1112653	32	+	.	ID=SEQF5835.1|CP024138.1_1_SPACER3;Parent=SEQF5835.1|CP024138.1_1;Note=TTGGTCACTCGTCAAAAGTCGAGACGGTCGAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	direct_repeat	1112654	1112682	29	+	.	ID=SEQF5835.1|CP024138.1_1_REPEAT4;Parent=SEQF5835.1|CP024138.1_1;Note=GAGTTCCCCACGTCAGCGGGGATAAACCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	binding_site	1112683	1112714	32	+	.	ID=SEQF5835.1|CP024138.1_1_SPACER4;Parent=SEQF5835.1|CP024138.1_1;Note=AATGATTGATATAAATCTGTGTACGGTGTCCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	direct_repeat	1112715	1112743	29	+	.	ID=SEQF5835.1|CP024138.1_1_REPEAT5;Parent=SEQF5835.1|CP024138.1_1;Note=GAGTTCCCCGCGCCAGCGGGGATAAACCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	binding_site	1112744	1112775	32	+	.	ID=SEQF5835.1|CP024138.1_1_SPACER5;Parent=SEQF5835.1|CP024138.1_1;Note=CTAGGATAAATTAAAAGACAAAATTGCAGCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	direct_repeat	1112776	1112804	29	+	.	ID=SEQF5835.1|CP024138.1_1_REPEAT6;Parent=SEQF5835.1|CP024138.1_1;Note=GAGTTCCCCGCGGCAGCGGGGATAAACCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	binding_site	1112805	1112836	32	+	.	ID=SEQF5835.1|CP024138.1_1_SPACER6;Parent=SEQF5835.1|CP024138.1_1;Note=GAGCGACCAGTATCAAGATCGACAGGTTTTGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	direct_repeat	1112837	1112865	29	+	.	ID=SEQF5835.1|CP024138.1_1_REPEAT7;Parent=SEQF5835.1|CP024138.1_1;Note=GAGTTCCCCGCGCCAGCGGGGATAAACCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	binding_site	1112866	1112897	32	+	.	ID=SEQF5835.1|CP024138.1_1_SPACER7;Parent=SEQF5835.1|CP024138.1_1;Note=ATCGATATGTACGTTAGCGAGGGGATCACGCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	direct_repeat	1112898	1112926	29	+	.	ID=SEQF5835.1|CP024138.1_1_REPEAT8;Parent=SEQF5835.1|CP024138.1_1;Note=GAGTTCCCCGCACCAGCGGGGATAAACCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	repeat_region	1138628	1139388	761	+	.	ID=SEQF5835.1|CP024138.1_2;Genome_ID=SEQF5835.1;Note=Predictor:CCtyper;Start:1138628;End:1139388;Consensus_Repeat:GTGTTCCCCGCGCCAGCGGGGATAAACCG;Number_of_Repeats:13;Repeat_Length:29;Average_Spacer_Length:32;Repeat_Identity:91.4;Spacer_Identity:40.7;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: I-E;Cas_Subtype_Prediction:I-E;Subtype_Probability:1.0;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	direct_repeat	1138628	1138656	29	+	.	ID=SEQF5835.1|CP024138.1_2_REPEAT1;Parent=SEQF5835.1|CP024138.1_2;Note=GTGTTCCCCGCGCCAGCGGGGATAAACCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	binding_site	1138657	1138688	32	+	.	ID=SEQF5835.1|CP024138.1_2_SPACER1;Parent=SEQF5835.1|CP024138.1_2;Note=CATTGAAAACATTGCCTTTATTTTATTTTTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	direct_repeat	1138689	1138717	29	+	.	ID=SEQF5835.1|CP024138.1_2_REPEAT2;Parent=SEQF5835.1|CP024138.1_2;Note=GTGTTCCCCGCGCCAGCGGGGATAAACCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	binding_site	1138718	1138749	32	+	.	ID=SEQF5835.1|CP024138.1_2_SPACER2;Parent=SEQF5835.1|CP024138.1_2;Note=GTGCCGCCGCTGGGCACTTCCTTCCCGTGAGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	direct_repeat	1138750	1138778	29	+	.	ID=SEQF5835.1|CP024138.1_2_REPEAT3;Parent=SEQF5835.1|CP024138.1_2;Note=GTGTTCCCCGCGCCAGCGGGGATAAACCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	binding_site	1138779	1138810	32	+	.	ID=SEQF5835.1|CP024138.1_2_SPACER3;Parent=SEQF5835.1|CP024138.1_2;Note=CCCTGATAGCGTCCAGTTGAATGCGCGCCCGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	direct_repeat	1138811	1138839	29	+	.	ID=SEQF5835.1|CP024138.1_2_REPEAT4;Parent=SEQF5835.1|CP024138.1_2;Note=GTGTTCCCCGCGCCAGCGGGGATAAACCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	binding_site	1138840	1138871	32	+	.	ID=SEQF5835.1|CP024138.1_2_SPACER4;Parent=SEQF5835.1|CP024138.1_2;Note=GCAGGCACGGGCAATATCAGACTCGGTCAAAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	direct_repeat	1138872	1138900	29	+	.	ID=SEQF5835.1|CP024138.1_2_REPEAT5;Parent=SEQF5835.1|CP024138.1_2;Note=GTGTTCCCCGCGCCAGCGGGGATAAACCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	binding_site	1138901	1138932	32	+	.	ID=SEQF5835.1|CP024138.1_2_SPACER5;Parent=SEQF5835.1|CP024138.1_2;Note=CTCGGTTGTTTTCATATTACCGGCCTGCCACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	direct_repeat	1138933	1138961	29	+	.	ID=SEQF5835.1|CP024138.1_2_REPEAT6;Parent=SEQF5835.1|CP024138.1_2;Note=GTGTTCCCCGCGCCAGCGGGGATAAACCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	binding_site	1138962	1138993	32	+	.	ID=SEQF5835.1|CP024138.1_2_SPACER6;Parent=SEQF5835.1|CP024138.1_2;Note=ACAATATCCCGGACCGGGCGCTGATTTAGTCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	direct_repeat	1138994	1139022	29	+	.	ID=SEQF5835.1|CP024138.1_2_REPEAT7;Parent=SEQF5835.1|CP024138.1_2;Note=GTGTTCCCCGCGCCAGCGGGGATAAACCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	binding_site	1139023	1139054	32	+	.	ID=SEQF5835.1|CP024138.1_2_SPACER7;Parent=SEQF5835.1|CP024138.1_2;Note=TGGGATGAGCAAATAACGTCGTTTCCTAGAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	direct_repeat	1139055	1139083	29	+	.	ID=SEQF5835.1|CP024138.1_2_REPEAT8;Parent=SEQF5835.1|CP024138.1_2;Note=GTGTTCCCCGCGCCAGCGGGGATAAACCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	binding_site	1139084	1139115	32	+	.	ID=SEQF5835.1|CP024138.1_2_SPACER8;Parent=SEQF5835.1|CP024138.1_2;Note=CCGCCGTGCCAGTGATCCTCATACGGCCTGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	direct_repeat	1139116	1139144	29	+	.	ID=SEQF5835.1|CP024138.1_2_REPEAT9;Parent=SEQF5835.1|CP024138.1_2;Note=GTGTTCCCCGCGCCAGCGGGGATAAACCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	binding_site	1139145	1139176	32	+	.	ID=SEQF5835.1|CP024138.1_2_SPACER9;Parent=SEQF5835.1|CP024138.1_2;Note=AAATTAAGAACGGCGTAAACGACGGCAGCATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	direct_repeat	1139177	1139205	29	+	.	ID=SEQF5835.1|CP024138.1_2_REPEAT10;Parent=SEQF5835.1|CP024138.1_2;Note=GTGTTCCCCGCGCCAGCGGGGATAAACCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	binding_site	1139206	1139237	32	+	.	ID=SEQF5835.1|CP024138.1_2_SPACER10;Parent=SEQF5835.1|CP024138.1_2;Note=GTGATGATTCAGAGCAGACATTAGCCCGCGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	direct_repeat	1139238	1139266	29	+	.	ID=SEQF5835.1|CP024138.1_2_REPEAT11;Parent=SEQF5835.1|CP024138.1_2;Note=GTGTTCCCCGCGCCAGCGGGGATAAACCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	binding_site	1139267	1139298	32	+	.	ID=SEQF5835.1|CP024138.1_2_SPACER11;Parent=SEQF5835.1|CP024138.1_2;Note=GGTAAAAACACGGTCTGAACCGACATTCATGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	direct_repeat	1139299	1139327	29	+	.	ID=SEQF5835.1|CP024138.1_2_REPEAT12;Parent=SEQF5835.1|CP024138.1_2;Note=GTGTTCCCCGCGTCAGCGGGGATAAACCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	binding_site	1139328	1139359	32	+	.	ID=SEQF5835.1|CP024138.1_2_SPACER12;Parent=SEQF5835.1|CP024138.1_2;Note=GACGCACTGGATGCGATGATGGATATCACTTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	direct_repeat	1139360	1139388	29	+	.	ID=SEQF5835.1|CP024138.1_2_REPEAT13;Parent=SEQF5835.1|CP024138.1_2;Note=GAATTCCCCGCCCCTGCGGTAGAACTCCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5835.1|CP024138.1	CCTyper	OPERON	1128624	1141606	12983	+	.	ID=SEQF5835.1|CP024138.1@13;Genome_ID=SEQF5835.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-E;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=I-E;Best_score=28.0;Genes=CysH_0_IVB,Cas3_1_CAS-I,Cse1_0_IE,Cse2_0_IE,Cas7_0_IE,Cas5_0_CAS-I-E,Cas6_0_IE,Cas1_0_IE,Cas2_1_CAS-I-II-III-IV-V-VI,CysH_0_IVB;Positions=1058,1060,1061,1062,1063,1064,1065,1066,1067,1069;E-values=7.50e-17,1.80e-173,9.20e-183,5.40e-35,6.70e-134,5.60e-54,1.90e-86,7.20e-115,1.30e-40,1.40e-19;CoverageSeq=0.743,0.847,0.969,0.888,0.915,0.719,0.977,0.86,0.929,0.571;CoverageHMM=0.719,0.98,1.0,1.0,1.0,0.973,0.995,0.989,1.0,0.683;Strand_Interference=1;Strand_Adaptation=1
SEQF5835.1|CP024138.1	CCTyper	CDS	1137318	1138241	308	+	.	ID=SEQF5835.1|CP024138.1_1066_cas;Genome_ID=SEQF5835.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IE;coding_strand=+;E-value=7.2e-115;Score=380.9;Coverage_Seq=0.8603896103896104;Coverage_Hmm=0.9888475836431226
SEQF5835.1|CP024138.1	CCTyper	CDS	1138238	1138531	98	+	.	ID=SEQF5835.1|CP024138.1_1067_cas;Genome_ID=SEQF5835.1;Feature_type=CDS;Product=Cas Prediction : Cas2_1_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.3e-40;Score=135.6;Coverage_Seq=0.9285714285714286;Coverage_Hmm=1.0
SEQF5835.1|CP024138.1	CCTyper	CDS	1130012	1132669	886	+	.	ID=SEQF5835.1|CP024138.1_1060_cas;Genome_ID=SEQF5835.1;Feature_type=CDS;Product=Cas Prediction : Cas3_1_CAS-I;coding_strand=+;E-value=1.8e-173;Score=576.8;Coverage_Seq=0.8465011286681715;Coverage_Hmm=0.9798657718120806
SEQF5835.1|CP024138.1	CCTyper	CDS	1135943	1136689	249	+	.	ID=SEQF5835.1|CP024138.1_1064_cas;Genome_ID=SEQF5835.1;Feature_type=CDS;Product=Cas Prediction : Cas5_0_CAS-I-E;coding_strand=+;E-value=5.6e-54;Score=180.8;Coverage_Seq=0.7188755020080321;Coverage_Hmm=0.9725274725274725
SEQF5835.1|CP024138.1	CCTyper	CDS	1136671	1137321	217	+	.	ID=SEQF5835.1|CP024138.1_1065_cas;Genome_ID=SEQF5835.1;Feature_type=CDS;Product=Cas Prediction : Cas6_0_IE;coding_strand=+;E-value=1.9e-86;Score=287.8;Coverage_Seq=0.9769585253456221;Coverage_Hmm=0.9951923076923077
SEQF5835.1|CP024138.1	CCTyper	CDS	1134877	1135932	352	+	.	ID=SEQF5835.1|CP024138.1_1063_cas;Genome_ID=SEQF5835.1;Feature_type=CDS;Product=Cas Prediction : Cas7_0_IE;coding_strand=+;E-value=6.7e-134;Score=445.0;Coverage_Seq=0.9147727272727273;Coverage_Hmm=1.0
SEQF5835.1|CP024138.1	CCTyper	CDS	1132767	1134329	521	+	.	ID=SEQF5835.1|CP024138.1_1061_cas;Genome_ID=SEQF5835.1;Feature_type=CDS;Product=Cas Prediction : Cse1_0_IE;coding_strand=+;E-value=9.2e-183;Score=606.8;Coverage_Seq=0.9692898272552783;Coverage_Hmm=1.0
SEQF5835.1|CP024138.1	CCTyper	CDS	1134326	1134862	179	+	.	ID=SEQF5835.1|CP024138.1_1062_cas;Genome_ID=SEQF5835.1;Feature_type=CDS;Product=Cas Prediction : Cse2_0_IE;coding_strand=+;E-value=5.4e-35;Score=119.1;Coverage_Seq=0.888268156424581;Coverage_Hmm=1.0
SEQF5835.1|CP024138.1	CCTyper	CDS	1128624	1129358	245	+	.	ID=SEQF5835.1|CP024138.1_1058_cas;Genome_ID=SEQF5835.1;Feature_type=CDS;Product=Cas Prediction : CysH_0_IVB;coding_strand=+;E-value=7.5e-17;Score=59.9;Coverage_Seq=0.7428571428571429;Coverage_Hmm=0.7188755020080321
SEQF5835.1|CP024138.1	CCTyper	CDS	1140698	1141606	303	+	.	ID=SEQF5835.1|CP024138.1_1069_cas;Genome_ID=SEQF5835.1;Feature_type=CDS;Product=Cas Prediction : CysH_0_IVB;coding_strand=+;E-value=1.4e-19;Score=68.9;Coverage_Seq=0.570957095709571;Coverage_Hmm=0.6827309236947792