SEQF6127.1|LR962654.1	CCTyper	repeat_region	561541	562368	828	+	.	ID=SEQF6127.1|LR962654.1_1;Genome_ID=SEQF6127.1;Note=Predictor:CCtyper;Start:561541;End:562368;Consensus_Repeat:GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Number_of_Repeats:13;Repeat_Length:36;Average_Spacer_Length:30;Repeat_Identity:94.3;Spacer_Identity:41.3;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.999;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	direct_repeat	561541	561576	36	+	.	ID=SEQF6127.1|LR962654.1_1_REPEAT1;Parent=SEQF6127.1|LR962654.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	binding_site	561577	561606	30	+	.	ID=SEQF6127.1|LR962654.1_1_SPACER1;Parent=SEQF6127.1|LR962654.1_1;Note=ACACCTTTAAAAATATGAGTATAGTTTTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	direct_repeat	561607	561642	36	+	.	ID=SEQF6127.1|LR962654.1_1_REPEAT2;Parent=SEQF6127.1|LR962654.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	binding_site	561643	561672	30	+	.	ID=SEQF6127.1|LR962654.1_1_SPACER2;Parent=SEQF6127.1|LR962654.1_1;Note=TGGCTTGTTGTTACGTGTATTACAGACGGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	direct_repeat	561673	561708	36	+	.	ID=SEQF6127.1|LR962654.1_1_REPEAT3;Parent=SEQF6127.1|LR962654.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	binding_site	561709	561738	30	+	.	ID=SEQF6127.1|LR962654.1_1_SPACER3;Parent=SEQF6127.1|LR962654.1_1;Note=GCACACACACGCTACTCACAGGCATTATAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	direct_repeat	561739	561774	36	+	.	ID=SEQF6127.1|LR962654.1_1_REPEAT4;Parent=SEQF6127.1|LR962654.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	binding_site	561775	561804	30	+	.	ID=SEQF6127.1|LR962654.1_1_SPACER4;Parent=SEQF6127.1|LR962654.1_1;Note=GTTTTCATTTAAGTAGTGCGCTTGATATGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	direct_repeat	561805	561840	36	+	.	ID=SEQF6127.1|LR962654.1_1_REPEAT5;Parent=SEQF6127.1|LR962654.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	binding_site	561841	561870	30	+	.	ID=SEQF6127.1|LR962654.1_1_SPACER5;Parent=SEQF6127.1|LR962654.1_1;Note=TAAAGCAGCTTCTAAAACAGAAGGTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	direct_repeat	561871	561906	36	+	.	ID=SEQF6127.1|LR962654.1_1_REPEAT6;Parent=SEQF6127.1|LR962654.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	binding_site	561907	561936	30	+	.	ID=SEQF6127.1|LR962654.1_1_SPACER6;Parent=SEQF6127.1|LR962654.1_1;Note=GATTGGTAAGATTACATGACCTTTAGTACG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	direct_repeat	561937	561972	36	+	.	ID=SEQF6127.1|LR962654.1_1_REPEAT7;Parent=SEQF6127.1|LR962654.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	binding_site	561973	562002	30	+	.	ID=SEQF6127.1|LR962654.1_1_SPACER7;Parent=SEQF6127.1|LR962654.1_1;Note=AAAGAAATGGACACATTACACAACGCTTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	direct_repeat	562003	562038	36	+	.	ID=SEQF6127.1|LR962654.1_1_REPEAT8;Parent=SEQF6127.1|LR962654.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	binding_site	562039	562068	30	+	.	ID=SEQF6127.1|LR962654.1_1_SPACER8;Parent=SEQF6127.1|LR962654.1_1;Note=GTGCAACAAAAGAATATTGTTGTCAATGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	direct_repeat	562069	562104	36	+	.	ID=SEQF6127.1|LR962654.1_1_REPEAT9;Parent=SEQF6127.1|LR962654.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	binding_site	562105	562134	30	+	.	ID=SEQF6127.1|LR962654.1_1_SPACER9;Parent=SEQF6127.1|LR962654.1_1;Note=ATCAGTTGTCGGGAAATTGCCGGAGCGTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	direct_repeat	562135	562170	36	+	.	ID=SEQF6127.1|LR962654.1_1_REPEAT10;Parent=SEQF6127.1|LR962654.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	binding_site	562171	562200	30	+	.	ID=SEQF6127.1|LR962654.1_1_SPACER10;Parent=SEQF6127.1|LR962654.1_1;Note=TTCAAGAAAGCTATGGAAGTTCTGAAGCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	direct_repeat	562201	562236	36	+	.	ID=SEQF6127.1|LR962654.1_1_REPEAT11;Parent=SEQF6127.1|LR962654.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	binding_site	562237	562266	30	+	.	ID=SEQF6127.1|LR962654.1_1_SPACER11;Parent=SEQF6127.1|LR962654.1_1;Note=TGGGGCTAAAGGTGTAGCACATCAAGTTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	direct_repeat	562267	562302	36	+	.	ID=SEQF6127.1|LR962654.1_1_REPEAT12;Parent=SEQF6127.1|LR962654.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	binding_site	562303	562332	30	+	.	ID=SEQF6127.1|LR962654.1_1_SPACER12;Parent=SEQF6127.1|LR962654.1_1;Note=CAATGTAAATGCTCATTATGATTTACATAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	direct_repeat	562333	562368	36	+	.	ID=SEQF6127.1|LR962654.1_1_REPEAT13;Parent=SEQF6127.1|LR962654.1_1;Note=GTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	repeat_region	1875162	1875725	564	+	.	ID=SEQF6127.1|LR962654.1_2;Genome_ID=SEQF6127.1;Note=Predictor:CCtyper;Start:1875162;End:1875725;Consensus_Repeat:GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Number_of_Repeats:9;Repeat_Length:36;Average_Spacer_Length:30;Repeat_Identity:90.9;Spacer_Identity:41.7;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.999;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	direct_repeat	1875162	1875197	36	+	.	ID=SEQF6127.1|LR962654.1_2_REPEAT1;Parent=SEQF6127.1|LR962654.1_2;Note=GTGATAGTTTGTTTTTTAACAACATGGCTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	binding_site	1875198	1875227	30	+	.	ID=SEQF6127.1|LR962654.1_2_SPACER1;Parent=SEQF6127.1|LR962654.1_2;Note=AAATTTTTTGAACTTAATGCAATTTCTTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	direct_repeat	1875228	1875263	36	+	.	ID=SEQF6127.1|LR962654.1_2_REPEAT2;Parent=SEQF6127.1|LR962654.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	binding_site	1875264	1875293	30	+	.	ID=SEQF6127.1|LR962654.1_2_SPACER2;Parent=SEQF6127.1|LR962654.1_2;Note=AAAACTTTTGACGGCTCTTTAGTCAACCCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	direct_repeat	1875294	1875329	36	+	.	ID=SEQF6127.1|LR962654.1_2_REPEAT3;Parent=SEQF6127.1|LR962654.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	binding_site	1875330	1875359	30	+	.	ID=SEQF6127.1|LR962654.1_2_SPACER3;Parent=SEQF6127.1|LR962654.1_2;Note=GGAGAAATGTAGCTGCTGTTTTGACATTAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	direct_repeat	1875360	1875395	36	+	.	ID=SEQF6127.1|LR962654.1_2_REPEAT4;Parent=SEQF6127.1|LR962654.1_2;Note=GTTTTGGTACCATTCTGAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	binding_site	1875396	1875425	30	+	.	ID=SEQF6127.1|LR962654.1_2_SPACER4;Parent=SEQF6127.1|LR962654.1_2;Note=TGTTTCATCGTCCTTTCTATTTGGGAAGTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	direct_repeat	1875426	1875461	36	+	.	ID=SEQF6127.1|LR962654.1_2_REPEAT5;Parent=SEQF6127.1|LR962654.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	binding_site	1875462	1875491	30	+	.	ID=SEQF6127.1|LR962654.1_2_SPACER5;Parent=SEQF6127.1|LR962654.1_2;Note=GCAACTTTTGTTTTCTTTTCTTCTTTTGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	direct_repeat	1875492	1875527	36	+	.	ID=SEQF6127.1|LR962654.1_2_REPEAT6;Parent=SEQF6127.1|LR962654.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	binding_site	1875528	1875557	30	+	.	ID=SEQF6127.1|LR962654.1_2_SPACER6;Parent=SEQF6127.1|LR962654.1_2;Note=TACGAGCTCCCAACATACGTTGACGGTGCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	direct_repeat	1875558	1875593	36	+	.	ID=SEQF6127.1|LR962654.1_2_REPEAT7;Parent=SEQF6127.1|LR962654.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	binding_site	1875594	1875623	30	+	.	ID=SEQF6127.1|LR962654.1_2_SPACER7;Parent=SEQF6127.1|LR962654.1_2;Note=TCTTTGACAATATCATAATCCATGTGCTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	direct_repeat	1875624	1875659	36	+	.	ID=SEQF6127.1|LR962654.1_2_REPEAT8;Parent=SEQF6127.1|LR962654.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	binding_site	1875660	1875689	30	+	.	ID=SEQF6127.1|LR962654.1_2_SPACER8;Parent=SEQF6127.1|LR962654.1_2;Note=TCCGTTGTCTAATTCGATTAATTTCATCAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	direct_repeat	1875690	1875725	36	+	.	ID=SEQF6127.1|LR962654.1_2_REPEAT9;Parent=SEQF6127.1|LR962654.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6127.1|LR962654.1	CCTyper	OPERON	555582	564953	9372	+	.	ID=SEQF6127.1|LR962654.1@11;Genome_ID=SEQF6127.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_1_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_1_CAS-II-A,AbiEii_0_CAS-III;Positions=543,544,545,546,549;E-values=0.00e+00,2.70e-97,2.30e-47,4.10e-107,2.20e-04;CoverageSeq=0.998,0.931,0.982,0.991,0.406;CoverageHMM=0.998,0.996,0.957,1.0,0.447;Strand_Interference=1;Strand_Adaptation=1
SEQF6127.1|LR962654.1	CCTyper	CDS	564000	564953	318	+	.	ID=SEQF6127.1|LR962654.1_549_cas;Genome_ID=SEQF6127.1;Feature_type=CDS;Product=Cas Prediction : AbiEii_0_CAS-III;coding_strand=+;E-value=0.00022;Score=18.2;Coverage_Seq=0.4056603773584906;Coverage_Hmm=0.4471830985915493
SEQF6127.1|LR962654.1	CCTyper	CDS	559596	560462	289	+	.	ID=SEQF6127.1|LR962654.1_544_cas;Genome_ID=SEQF6127.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=2.7e-97;Score=322.6;Coverage_Seq=0.9307958477508651;Coverage_Hmm=0.9963636363636363
SEQF6127.1|LR962654.1	CCTyper	CDS	560459	560788	110	+	.	ID=SEQF6127.1|LR962654.1_545_cas;Genome_ID=SEQF6127.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=2.3e-47;Score=157.4;Coverage_Seq=0.9818181818181818;Coverage_Hmm=0.9568965517241379
SEQF6127.1|LR962654.1	CCTyper	CDS	555582	559595	1338	+	.	ID=SEQF6127.1|LR962654.1_543_cas;Genome_ID=SEQF6127.1;Feature_type=CDS;Product=Cas Prediction : Cas9_1_II;coding_strand=+;E-value=0.0;Score=1132.0;Coverage_Seq=0.9977578475336323;Coverage_Hmm=0.9982142857142857
SEQF6127.1|LR962654.1	CCTyper	CDS	560789	561448	220	+	.	ID=SEQF6127.1|LR962654.1_546_cas;Genome_ID=SEQF6127.1;Feature_type=CDS;Product=Cas Prediction : Csn2_1_CAS-II-A;coding_strand=+;E-value=4.1e-107;Score=354.1;Coverage_Seq=0.990909090909091;Coverage_Hmm=1.0