SEQF6144.1|LR134312.1	CCTyper	repeat_region	440524	441087	564	+	.	ID=SEQF6144.1|LR134312.1_1;Genome_ID=SEQF6144.1;Note=Predictor:CCtyper;Start:440524;End:441087;Consensus_Repeat:GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Number_of_Repeats:9;Repeat_Length:36;Average_Spacer_Length:30;Repeat_Identity:93.7;Spacer_Identity:41.2;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.999;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	440524	440559	36	+	.	ID=SEQF6144.1|LR134312.1_1_REPEAT1;Parent=SEQF6144.1|LR134312.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	440560	440589	30	+	.	ID=SEQF6144.1|LR134312.1_1_SPACER1;Parent=SEQF6144.1|LR134312.1_1;Note=TGACAACATTGTAATTGAGAACGCACGTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	440590	440625	36	+	.	ID=SEQF6144.1|LR134312.1_1_REPEAT2;Parent=SEQF6144.1|LR134312.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	440626	440655	30	+	.	ID=SEQF6144.1|LR134312.1_1_SPACER2;Parent=SEQF6144.1|LR134312.1_1;Note=AACTATTGTCCGTTTTGCGGGAAAGAAGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	440656	440691	36	+	.	ID=SEQF6144.1|LR134312.1_1_REPEAT3;Parent=SEQF6144.1|LR134312.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	440692	440721	30	+	.	ID=SEQF6144.1|LR134312.1_1_SPACER3;Parent=SEQF6144.1|LR134312.1_1;Note=TGATGATGCACAGCAAAACACATTTAAGAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	440722	440757	36	+	.	ID=SEQF6144.1|LR134312.1_1_REPEAT4;Parent=SEQF6144.1|LR134312.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	440758	440787	30	+	.	ID=SEQF6144.1|LR134312.1_1_SPACER4;Parent=SEQF6144.1|LR134312.1_1;Note=AGCTTTAAGCTCCTTCAAGACTTTCTCTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	440788	440823	36	+	.	ID=SEQF6144.1|LR134312.1_1_REPEAT5;Parent=SEQF6144.1|LR134312.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	440824	440853	30	+	.	ID=SEQF6144.1|LR134312.1_1_SPACER5;Parent=SEQF6144.1|LR134312.1_1;Note=TGGCTTGTTGTTACGTGTATTACAGACGGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	440854	440889	36	+	.	ID=SEQF6144.1|LR134312.1_1_REPEAT6;Parent=SEQF6144.1|LR134312.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	440890	440919	30	+	.	ID=SEQF6144.1|LR134312.1_1_SPACER6;Parent=SEQF6144.1|LR134312.1_1;Note=GCACACACACGCTACTCACAGGCATTATAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	440920	440955	36	+	.	ID=SEQF6144.1|LR134312.1_1_REPEAT7;Parent=SEQF6144.1|LR134312.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	440956	440985	30	+	.	ID=SEQF6144.1|LR134312.1_1_SPACER7;Parent=SEQF6144.1|LR134312.1_1;Note=TCATAGCAGACCAACCTGCTCCATCGCTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	440986	441021	36	+	.	ID=SEQF6144.1|LR134312.1_1_REPEAT8;Parent=SEQF6144.1|LR134312.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	441022	441051	30	+	.	ID=SEQF6144.1|LR134312.1_1_SPACER8;Parent=SEQF6144.1|LR134312.1_1;Note=CAATGTAAATGCTCATTATGATTTACATAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	441052	441087	36	+	.	ID=SEQF6144.1|LR134312.1_1_REPEAT9;Parent=SEQF6144.1|LR134312.1_1;Note=GTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	repeat_region	1684831	1686120	1290	+	.	ID=SEQF6144.1|LR134312.1_2;Genome_ID=SEQF6144.1;Note=Predictor:CCtyper;Start:1684831;End:1686120;Consensus_Repeat:GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Number_of_Repeats:20;Repeat_Length:36;Average_Spacer_Length:30;Repeat_Identity:100.0;Spacer_Identity:43.3;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.999;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	1684831	1684866	36	+	.	ID=SEQF6144.1|LR134312.1_2_REPEAT1;Parent=SEQF6144.1|LR134312.1_2;Note=GTGATAGTTTGTTTTTTAACAACATGGCTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	1684867	1684896	30	+	.	ID=SEQF6144.1|LR134312.1_2_SPACER1;Parent=SEQF6144.1|LR134312.1_2;Note=AAATTTTTTGAACTTAATGCAATTTCTTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	1684897	1684932	36	+	.	ID=SEQF6144.1|LR134312.1_2_REPEAT2;Parent=SEQF6144.1|LR134312.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	1684933	1684962	30	+	.	ID=SEQF6144.1|LR134312.1_2_SPACER2;Parent=SEQF6144.1|LR134312.1_2;Note=AAAACTTTTGACGGCTCTTTAGTCAACCCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	1684963	1684998	36	+	.	ID=SEQF6144.1|LR134312.1_2_REPEAT3;Parent=SEQF6144.1|LR134312.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	1684999	1685028	30	+	.	ID=SEQF6144.1|LR134312.1_2_SPACER3;Parent=SEQF6144.1|LR134312.1_2;Note=TTTGATAATCCAGAATCAACATCTTCACCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	1685029	1685064	36	+	.	ID=SEQF6144.1|LR134312.1_2_REPEAT4;Parent=SEQF6144.1|LR134312.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	1685065	1685094	30	+	.	ID=SEQF6144.1|LR134312.1_2_SPACER4;Parent=SEQF6144.1|LR134312.1_2;Note=GCTAATCATCATATACGCTAATTTAAATTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	1685095	1685130	36	+	.	ID=SEQF6144.1|LR134312.1_2_REPEAT5;Parent=SEQF6144.1|LR134312.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	1685131	1685160	30	+	.	ID=SEQF6144.1|LR134312.1_2_SPACER5;Parent=SEQF6144.1|LR134312.1_2;Note=TTAGGATTGCATCACGCTCTACTTCAACAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	1685161	1685196	36	+	.	ID=SEQF6144.1|LR134312.1_2_REPEAT6;Parent=SEQF6144.1|LR134312.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	1685197	1685226	30	+	.	ID=SEQF6144.1|LR134312.1_2_SPACER6;Parent=SEQF6144.1|LR134312.1_2;Note=GCAACTTTTGTTTTCTTTTCTTCTTTTGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	1685227	1685262	36	+	.	ID=SEQF6144.1|LR134312.1_2_REPEAT7;Parent=SEQF6144.1|LR134312.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	1685263	1685292	30	+	.	ID=SEQF6144.1|LR134312.1_2_SPACER7;Parent=SEQF6144.1|LR134312.1_2;Note=TACGAGCTCCCAACATACGTTGACGGTGCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	1685293	1685328	36	+	.	ID=SEQF6144.1|LR134312.1_2_REPEAT8;Parent=SEQF6144.1|LR134312.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	1685329	1685358	30	+	.	ID=SEQF6144.1|LR134312.1_2_SPACER8;Parent=SEQF6144.1|LR134312.1_2;Note=AGCTTCAGTAAATTGGTTACACAAACCTCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	1685359	1685394	36	+	.	ID=SEQF6144.1|LR134312.1_2_REPEAT9;Parent=SEQF6144.1|LR134312.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	1685395	1685424	30	+	.	ID=SEQF6144.1|LR134312.1_2_SPACER9;Parent=SEQF6144.1|LR134312.1_2;Note=CCTTGATAAGATCCACCTCCTGATCCAGAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	1685425	1685460	36	+	.	ID=SEQF6144.1|LR134312.1_2_REPEAT10;Parent=SEQF6144.1|LR134312.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	1685461	1685490	30	+	.	ID=SEQF6144.1|LR134312.1_2_SPACER10;Parent=SEQF6144.1|LR134312.1_2;Note=GTGGCAATGAACTTGTCTAAAAATGAGGAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	1685491	1685526	36	+	.	ID=SEQF6144.1|LR134312.1_2_REPEAT11;Parent=SEQF6144.1|LR134312.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	1685527	1685556	30	+	.	ID=SEQF6144.1|LR134312.1_2_SPACER11;Parent=SEQF6144.1|LR134312.1_2;Note=CCACTTGACGTAACAGAGTTGAAACGCACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	1685557	1685592	36	+	.	ID=SEQF6144.1|LR134312.1_2_REPEAT12;Parent=SEQF6144.1|LR134312.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	1685593	1685622	30	+	.	ID=SEQF6144.1|LR134312.1_2_SPACER12;Parent=SEQF6144.1|LR134312.1_2;Note=TCTGTAAAGTATGCTTTACCTGATTGTTCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	1685623	1685658	36	+	.	ID=SEQF6144.1|LR134312.1_2_REPEAT13;Parent=SEQF6144.1|LR134312.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	1685659	1685688	30	+	.	ID=SEQF6144.1|LR134312.1_2_SPACER13;Parent=SEQF6144.1|LR134312.1_2;Note=AACCCTCTTACTATGAGTTCCATTTATTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	1685689	1685724	36	+	.	ID=SEQF6144.1|LR134312.1_2_REPEAT14;Parent=SEQF6144.1|LR134312.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	1685725	1685754	30	+	.	ID=SEQF6144.1|LR134312.1_2_SPACER14;Parent=SEQF6144.1|LR134312.1_2;Note=GAACATTGCGAAACAATAGATGAATTTGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	1685755	1685790	36	+	.	ID=SEQF6144.1|LR134312.1_2_REPEAT15;Parent=SEQF6144.1|LR134312.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	1685791	1685820	30	+	.	ID=SEQF6144.1|LR134312.1_2_SPACER15;Parent=SEQF6144.1|LR134312.1_2;Note=CCGTAAACTCTCGGACGTGACTCAATATAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	1685821	1685856	36	+	.	ID=SEQF6144.1|LR134312.1_2_REPEAT16;Parent=SEQF6144.1|LR134312.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	1685857	1685886	30	+	.	ID=SEQF6144.1|LR134312.1_2_SPACER16;Parent=SEQF6144.1|LR134312.1_2;Note=ATTTATTAGTTTCGTTAATCTTAATATTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	1685887	1685922	36	+	.	ID=SEQF6144.1|LR134312.1_2_REPEAT17;Parent=SEQF6144.1|LR134312.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	1685923	1685952	30	+	.	ID=SEQF6144.1|LR134312.1_2_SPACER17;Parent=SEQF6144.1|LR134312.1_2;Note=TGTGCATTCGCACTAATATCCGTTTACGTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	1685953	1685988	36	+	.	ID=SEQF6144.1|LR134312.1_2_REPEAT18;Parent=SEQF6144.1|LR134312.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	1685989	1686018	30	+	.	ID=SEQF6144.1|LR134312.1_2_SPACER18;Parent=SEQF6144.1|LR134312.1_2;Note=ATCAGAAAGAGAGTGAAGCTGATGTCTCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	1686019	1686054	36	+	.	ID=SEQF6144.1|LR134312.1_2_REPEAT19;Parent=SEQF6144.1|LR134312.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	binding_site	1686055	1686084	30	+	.	ID=SEQF6144.1|LR134312.1_2_SPACER19;Parent=SEQF6144.1|LR134312.1_2;Note=ATTCTCTGTCACATTCCATTAGTTCCATGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	direct_repeat	1686085	1686120	36	+	.	ID=SEQF6144.1|LR134312.1_2_REPEAT20;Parent=SEQF6144.1|LR134312.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6144.1|LR134312.1	CCTyper	OPERON	434565	443671	9107	+	.	ID=SEQF6144.1|LR134312.1@9;Genome_ID=SEQF6144.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_1_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_1_CAS-II-A,AbiEii_0_CAS-III;Positions=410,411,412,413,415;E-values=0.00e+00,1.50e-97,2.00e-47,3.60e-107,2.00e-04;CoverageSeq=0.998,0.931,0.982,0.991,0.406;CoverageHMM=0.998,0.996,0.957,1.0,0.447;Strand_Interference=1;Strand_Adaptation=1
SEQF6144.1|LR134312.1	CCTyper	CDS	442718	443671	318	+	.	ID=SEQF6144.1|LR134312.1_415_cas;Genome_ID=SEQF6144.1;Feature_type=CDS;Product=Cas Prediction : AbiEii_0_CAS-III;coding_strand=+;E-value=0.0002;Score=18.1;Coverage_Seq=0.4056603773584906;Coverage_Hmm=0.4471830985915493
SEQF6144.1|LR134312.1	CCTyper	CDS	438579	439445	289	+	.	ID=SEQF6144.1|LR134312.1_411_cas;Genome_ID=SEQF6144.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.5e-97;Score=323.2;Coverage_Seq=0.9307958477508651;Coverage_Hmm=0.9963636363636363
SEQF6144.1|LR134312.1	CCTyper	CDS	439442	439771	110	+	.	ID=SEQF6144.1|LR134312.1_412_cas;Genome_ID=SEQF6144.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=2e-47;Score=157.4;Coverage_Seq=0.9818181818181818;Coverage_Hmm=0.9568965517241379
SEQF6144.1|LR134312.1	CCTyper	CDS	434565	438578	1338	+	.	ID=SEQF6144.1|LR134312.1_410_cas;Genome_ID=SEQF6144.1;Feature_type=CDS;Product=Cas Prediction : Cas9_1_II;coding_strand=+;E-value=0.0;Score=1132.0;Coverage_Seq=0.9977578475336323;Coverage_Hmm=0.9982142857142857
SEQF6144.1|LR134312.1	CCTyper	CDS	439772	440431	220	+	.	ID=SEQF6144.1|LR134312.1_413_cas;Genome_ID=SEQF6144.1;Feature_type=CDS;Product=Cas Prediction : Csn2_1_CAS-II-A;coding_strand=+;E-value=3.6e-107;Score=354.1;Coverage_Seq=0.990909090909091;Coverage_Hmm=1.0