SEQF6147.1|LR961933.1	CCTyper	repeat_region	549725	550090	366	+	.	ID=SEQF6147.1|LR961933.1_1;Genome_ID=SEQF6147.1;Note=Predictor:CCtyper;Start:549725;End:550090;Consensus_Repeat:GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Number_of_Repeats:6;Repeat_Length:36;Average_Spacer_Length:30;Repeat_Identity:90.5;Spacer_Identity:43.4;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.999;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6147.1|LR961933.1	CCTyper	direct_repeat	549725	549760	36	+	.	ID=SEQF6147.1|LR961933.1_1_REPEAT1;Parent=SEQF6147.1|LR961933.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6147.1|LR961933.1	CCTyper	binding_site	549761	549790	30	+	.	ID=SEQF6147.1|LR961933.1_1_SPACER1;Parent=SEQF6147.1|LR961933.1_1;Note=TAAAGCAGCTTCTAAAACAGAAGGTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6147.1|LR961933.1	CCTyper	direct_repeat	549791	549826	36	+	.	ID=SEQF6147.1|LR961933.1_1_REPEAT2;Parent=SEQF6147.1|LR961933.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6147.1|LR961933.1	CCTyper	binding_site	549827	549856	30	+	.	ID=SEQF6147.1|LR961933.1_1_SPACER2;Parent=SEQF6147.1|LR961933.1_1;Note=GATTGGTAAGATTACATGATCTTTAGTACG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6147.1|LR961933.1	CCTyper	direct_repeat	549857	549892	36	+	.	ID=SEQF6147.1|LR961933.1_1_REPEAT3;Parent=SEQF6147.1|LR961933.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6147.1|LR961933.1	CCTyper	binding_site	549893	549922	30	+	.	ID=SEQF6147.1|LR961933.1_1_SPACER3;Parent=SEQF6147.1|LR961933.1_1;Note=AAAGAAATGGACACATTACACAACGCTTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6147.1|LR961933.1	CCTyper	direct_repeat	549923	549958	36	+	.	ID=SEQF6147.1|LR961933.1_1_REPEAT4;Parent=SEQF6147.1|LR961933.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6147.1|LR961933.1	CCTyper	binding_site	549959	549988	30	+	.	ID=SEQF6147.1|LR961933.1_1_SPACER4;Parent=SEQF6147.1|LR961933.1_1;Note=TAAAAACAAGACGAAATGAGGAAATTAACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6147.1|LR961933.1	CCTyper	direct_repeat	549989	550024	36	+	.	ID=SEQF6147.1|LR961933.1_1_REPEAT5;Parent=SEQF6147.1|LR961933.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6147.1|LR961933.1	CCTyper	binding_site	550025	550054	30	+	.	ID=SEQF6147.1|LR961933.1_1_SPACER5;Parent=SEQF6147.1|LR961933.1_1;Note=CAATGTAAATGCTCATTATGATTTACATAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6147.1|LR961933.1	CCTyper	direct_repeat	550055	550090	36	+	.	ID=SEQF6147.1|LR961933.1_1_REPEAT6;Parent=SEQF6147.1|LR961933.1_1;Note=GTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6147.1|LR961933.1	CCTyper	repeat_region	1843323	1843622	300	+	.	ID=SEQF6147.1|LR961933.1_2;Genome_ID=SEQF6147.1;Note=Predictor:CCtyper;Start:1843323;End:1843622;Consensus_Repeat:GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Number_of_Repeats:5;Repeat_Length:36;Average_Spacer_Length:30;Repeat_Identity:85.5;Spacer_Identity:44.7;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.999;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6147.1|LR961933.1	CCTyper	direct_repeat	1843323	1843358	36	+	.	ID=SEQF6147.1|LR961933.1_2_REPEAT1;Parent=SEQF6147.1|LR961933.1_2;Note=GTGATAGTTTGTTTTTTAACAACATGGCTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6147.1|LR961933.1	CCTyper	binding_site	1843359	1843388	30	+	.	ID=SEQF6147.1|LR961933.1_2_SPACER1;Parent=SEQF6147.1|LR961933.1_2;Note=AAATTTTTTGAACTTAATGCAATTTCTTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6147.1|LR961933.1	CCTyper	direct_repeat	1843389	1843424	36	+	.	ID=SEQF6147.1|LR961933.1_2_REPEAT2;Parent=SEQF6147.1|LR961933.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6147.1|LR961933.1	CCTyper	binding_site	1843425	1843454	30	+	.	ID=SEQF6147.1|LR961933.1_2_SPACER2;Parent=SEQF6147.1|LR961933.1_2;Note=TTTGATAATCCAGAATCAACATCTTCACCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6147.1|LR961933.1	CCTyper	direct_repeat	1843455	1843490	36	+	.	ID=SEQF6147.1|LR961933.1_2_REPEAT3;Parent=SEQF6147.1|LR961933.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6147.1|LR961933.1	CCTyper	binding_site	1843491	1843520	30	+	.	ID=SEQF6147.1|LR961933.1_2_SPACER3;Parent=SEQF6147.1|LR961933.1_2;Note=TGCATAATAATCTTTTCTCTTAATGTTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6147.1|LR961933.1	CCTyper	direct_repeat	1843521	1843556	36	+	.	ID=SEQF6147.1|LR961933.1_2_REPEAT4;Parent=SEQF6147.1|LR961933.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6147.1|LR961933.1	CCTyper	binding_site	1843557	1843586	30	+	.	ID=SEQF6147.1|LR961933.1_2_SPACER4;Parent=SEQF6147.1|LR961933.1_2;Note=AACCCTCTTACTATGAGTTCCATTTATTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6147.1|LR961933.1	CCTyper	direct_repeat	1843587	1843622	36	+	.	ID=SEQF6147.1|LR961933.1_2_REPEAT5;Parent=SEQF6147.1|LR961933.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6147.1|LR961933.1	CCTyper	OPERON	543766	552675	8910	+	.	ID=SEQF6147.1|LR961933.1@11;Genome_ID=SEQF6147.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_1_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_1_CAS-II-A,AbiEii_0_CAS-III;Positions=533,534,535,536,538;E-values=0.00e+00,1.70e-97,2.30e-47,4.00e-107,2.20e-04;CoverageSeq=0.998,0.931,0.982,0.991,0.406;CoverageHMM=0.998,0.996,0.957,1.0,0.447;Strand_Interference=1;Strand_Adaptation=1
SEQF6147.1|LR961933.1	CCTyper	CDS	551722	552675	318	+	.	ID=SEQF6147.1|LR961933.1_538_cas;Genome_ID=SEQF6147.1;Feature_type=CDS;Product=Cas Prediction : AbiEii_0_CAS-III;coding_strand=+;E-value=0.00022;Score=18.2;Coverage_Seq=0.4056603773584906;Coverage_Hmm=0.4471830985915493
SEQF6147.1|LR961933.1	CCTyper	CDS	547780	548646	289	+	.	ID=SEQF6147.1|LR961933.1_534_cas;Genome_ID=SEQF6147.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.7e-97;Score=323.2;Coverage_Seq=0.9307958477508651;Coverage_Hmm=0.9963636363636363
SEQF6147.1|LR961933.1	CCTyper	CDS	548643	548972	110	+	.	ID=SEQF6147.1|LR961933.1_535_cas;Genome_ID=SEQF6147.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=2.3e-47;Score=157.4;Coverage_Seq=0.9818181818181818;Coverage_Hmm=0.9568965517241379
SEQF6147.1|LR961933.1	CCTyper	CDS	543766	547779	1338	+	.	ID=SEQF6147.1|LR961933.1_533_cas;Genome_ID=SEQF6147.1;Feature_type=CDS;Product=Cas Prediction : Cas9_1_II;coding_strand=+;E-value=0.0;Score=1132.0;Coverage_Seq=0.9977578475336323;Coverage_Hmm=0.9982142857142857
SEQF6147.1|LR961933.1	CCTyper	CDS	548973	549632	220	+	.	ID=SEQF6147.1|LR961933.1_536_cas;Genome_ID=SEQF6147.1;Feature_type=CDS;Product=Cas Prediction : Csn2_1_CAS-II-A;coding_strand=+;E-value=4e-107;Score=354.1;Coverage_Seq=0.990909090909091;Coverage_Hmm=1.0