SEQF6160.1|LR962598.1	CCTyper	repeat_region	470233	470665	433	+	.	ID=SEQF6160.1|LR962598.1_1;Genome_ID=SEQF6160.1;Note=Predictor:CCtyper;Start:470233;End:470665;Consensus_Repeat:GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Number_of_Repeats:7;Repeat_Length:36;Average_Spacer_Length:30.2;Repeat_Identity:91.8;Spacer_Identity:44.8;Spacer_Length_Sem:0.2;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.999;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	direct_repeat	470233	470268	36	+	.	ID=SEQF6160.1|LR962598.1_1_REPEAT1;Parent=SEQF6160.1|LR962598.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	binding_site	470269	470298	30	+	.	ID=SEQF6160.1|LR962598.1_1_SPACER1;Parent=SEQF6160.1|LR962598.1_1;Note=TGGGAGGAAATTTAAATGGGTTTATTTGAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	direct_repeat	470299	470334	36	+	.	ID=SEQF6160.1|LR962598.1_1_REPEAT2;Parent=SEQF6160.1|LR962598.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	binding_site	470335	470364	30	+	.	ID=SEQF6160.1|LR962598.1_1_SPACER2;Parent=SEQF6160.1|LR962598.1_1;Note=ATTTAAGATTAGATATGAACAACTTACGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	direct_repeat	470365	470400	36	+	.	ID=SEQF6160.1|LR962598.1_1_REPEAT3;Parent=SEQF6160.1|LR962598.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	binding_site	470401	470431	31	+	.	ID=SEQF6160.1|LR962598.1_1_SPACER3;Parent=SEQF6160.1|LR962598.1_1;Note=AAAGGTATTAAATATCAGTTACAATGAATCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	direct_repeat	470432	470467	36	+	.	ID=SEQF6160.1|LR962598.1_1_REPEAT4;Parent=SEQF6160.1|LR962598.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	binding_site	470468	470497	30	+	.	ID=SEQF6160.1|LR962598.1_1_SPACER4;Parent=SEQF6160.1|LR962598.1_1;Note=CCACTTTATTAATTGCTTGTCAACACGTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	direct_repeat	470498	470533	36	+	.	ID=SEQF6160.1|LR962598.1_1_REPEAT5;Parent=SEQF6160.1|LR962598.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	binding_site	470534	470563	30	+	.	ID=SEQF6160.1|LR962598.1_1_SPACER5;Parent=SEQF6160.1|LR962598.1_1;Note=GTATCTACGTGCATAATCATATCGACTCAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	direct_repeat	470564	470599	36	+	.	ID=SEQF6160.1|LR962598.1_1_REPEAT6;Parent=SEQF6160.1|LR962598.1_1;Note=GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	binding_site	470600	470629	30	+	.	ID=SEQF6160.1|LR962598.1_1_SPACER6;Parent=SEQF6160.1|LR962598.1_1;Note=CAATGTAAATGCTCATTATGATTTACATAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	direct_repeat	470630	470665	36	+	.	ID=SEQF6160.1|LR962598.1_1_REPEAT7;Parent=SEQF6160.1|LR962598.1_1;Note=GTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	repeat_region	1788911	1789804	894	+	.	ID=SEQF6160.1|LR962598.1_2;Genome_ID=SEQF6160.1;Note=Predictor:CCtyper;Start:1788911;End:1789804;Consensus_Repeat:GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Number_of_Repeats:14;Repeat_Length:36;Average_Spacer_Length:30.0;Repeat_Identity:91.8;Spacer_Identity:41.9;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.999;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	direct_repeat	1788911	1788946	36	+	.	ID=SEQF6160.1|LR962598.1_2_REPEAT1;Parent=SEQF6160.1|LR962598.1_2;Note=GTGATAGTTTGTTTTTTAACAACATGACTATAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	binding_site	1788947	1788976	30	+	.	ID=SEQF6160.1|LR962598.1_2_SPACER1;Parent=SEQF6160.1|LR962598.1_2;Note=AGGGGAGAAAAAGCCAAATCAAAAAAGTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	direct_repeat	1788977	1789012	36	+	.	ID=SEQF6160.1|LR962598.1_2_REPEAT2;Parent=SEQF6160.1|LR962598.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	binding_site	1789013	1789042	30	+	.	ID=SEQF6160.1|LR962598.1_2_SPACER2;Parent=SEQF6160.1|LR962598.1_2;Note=TATAACGTAAATCACAGTCTTTTGTAAGTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	direct_repeat	1789043	1789078	36	+	.	ID=SEQF6160.1|LR962598.1_2_REPEAT3;Parent=SEQF6160.1|LR962598.1_2;Note=GTTTTGGTACCATTTCAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	binding_site	1789079	1789108	30	+	.	ID=SEQF6160.1|LR962598.1_2_SPACER3;Parent=SEQF6160.1|LR962598.1_2;Note=TGGTCGCAGTTTCCGCTCGAACTGCTTTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	direct_repeat	1789109	1789144	36	+	.	ID=SEQF6160.1|LR962598.1_2_REPEAT4;Parent=SEQF6160.1|LR962598.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	binding_site	1789145	1789174	30	+	.	ID=SEQF6160.1|LR962598.1_2_SPACER4;Parent=SEQF6160.1|LR962598.1_2;Note=AACGGTTGGCTTGTTGATGTAAAATTTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	direct_repeat	1789175	1789210	36	+	.	ID=SEQF6160.1|LR962598.1_2_REPEAT5;Parent=SEQF6160.1|LR962598.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	binding_site	1789211	1789240	30	+	.	ID=SEQF6160.1|LR962598.1_2_SPACER5;Parent=SEQF6160.1|LR962598.1_2;Note=GAAACCTTTTTTTGCGTTTGATATTTCTGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	direct_repeat	1789241	1789276	36	+	.	ID=SEQF6160.1|LR962598.1_2_REPEAT6;Parent=SEQF6160.1|LR962598.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	binding_site	1789277	1789306	30	+	.	ID=SEQF6160.1|LR962598.1_2_SPACER6;Parent=SEQF6160.1|LR962598.1_2;Note=ATTGAATCTGGCCAGCTGGCGCTAATTGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	direct_repeat	1789307	1789342	36	+	.	ID=SEQF6160.1|LR962598.1_2_REPEAT7;Parent=SEQF6160.1|LR962598.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	binding_site	1789343	1789372	30	+	.	ID=SEQF6160.1|LR962598.1_2_SPACER7;Parent=SEQF6160.1|LR962598.1_2;Note=GTGCAATAATAAAACGCTTTTTAGCTTTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	direct_repeat	1789373	1789408	36	+	.	ID=SEQF6160.1|LR962598.1_2_REPEAT8;Parent=SEQF6160.1|LR962598.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	binding_site	1789409	1789438	30	+	.	ID=SEQF6160.1|LR962598.1_2_SPACER8;Parent=SEQF6160.1|LR962598.1_2;Note=AGCTTTATTGAAAGATTATCGGGAGGTTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	direct_repeat	1789439	1789474	36	+	.	ID=SEQF6160.1|LR962598.1_2_REPEAT9;Parent=SEQF6160.1|LR962598.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	binding_site	1789475	1789504	30	+	.	ID=SEQF6160.1|LR962598.1_2_SPACER9;Parent=SEQF6160.1|LR962598.1_2;Note=GAAGATTATGTATTAAAGACTAAAAAGCCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	direct_repeat	1789505	1789540	36	+	.	ID=SEQF6160.1|LR962598.1_2_REPEAT10;Parent=SEQF6160.1|LR962598.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	binding_site	1789541	1789570	30	+	.	ID=SEQF6160.1|LR962598.1_2_SPACER10;Parent=SEQF6160.1|LR962598.1_2;Note=ATAGTTCTGGGTCACGTGACCAATCAATTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	direct_repeat	1789571	1789606	36	+	.	ID=SEQF6160.1|LR962598.1_2_REPEAT11;Parent=SEQF6160.1|LR962598.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	binding_site	1789607	1789636	30	+	.	ID=SEQF6160.1|LR962598.1_2_SPACER11;Parent=SEQF6160.1|LR962598.1_2;Note=AGGCTTCTGCGTTTAAGCCATCATAGCTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	direct_repeat	1789637	1789672	36	+	.	ID=SEQF6160.1|LR962598.1_2_REPEAT12;Parent=SEQF6160.1|LR962598.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	binding_site	1789673	1789702	30	+	.	ID=SEQF6160.1|LR962598.1_2_SPACER12;Parent=SEQF6160.1|LR962598.1_2;Note=ACAAGCGATGGTTAGGTATTGTAATTATAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	direct_repeat	1789703	1789738	36	+	.	ID=SEQF6160.1|LR962598.1_2_REPEAT13;Parent=SEQF6160.1|LR962598.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	binding_site	1789739	1789768	30	+	.	ID=SEQF6160.1|LR962598.1_2_SPACER13;Parent=SEQF6160.1|LR962598.1_2;Note=CCCATAGGTGTCTGTTGTATAAACACATTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	direct_repeat	1789769	1789804	36	+	.	ID=SEQF6160.1|LR962598.1_2_REPEAT14;Parent=SEQF6160.1|LR962598.1_2;Note=GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962599.1	CCTyper	repeat_region	112800	113125	326	+	.	ID=SEQF6160.1|LR962599.1_3;Genome_ID=SEQF6160.1;Note=Predictor:CCtyper;Start:112800;End:113125;Consensus_Repeat:ATACGTCAAACGTAACAAATATG;Number_of_Repeats:5;Repeat_Length:23;Average_Spacer_Length:52.8;Repeat_Identity:75.1;Spacer_Identity:53.7;Spacer_Length_Sem:0.8;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.629;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962599.1	CCTyper	direct_repeat	112800	112822	23	+	.	ID=SEQF6160.1|LR962599.1_3_REPEAT1;Parent=SEQF6160.1|LR962599.1_3;Note=ATACCTCAAATGTAACCACTATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962599.1	CCTyper	binding_site	112823	112877	55	+	.	ID=SEQF6160.1|LR962599.1_3_SPACER1;Parent=SEQF6160.1|LR962599.1_3;Note=GAAGAGACGTTTAGGGGATTGGAACATTTAGAATCGTTAGATTTAACCAGTTGGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962599.1	CCTyper	direct_repeat	112878	112900	23	+	.	ID=SEQF6160.1|LR962599.1_3_REPEAT2;Parent=SEQF6160.1|LR962599.1_3;Note=ATACGTCAAACGTAACAAATATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962599.1	CCTyper	binding_site	112901	112952	52	+	.	ID=SEQF6160.1|LR962599.1_3_SPACER2;Parent=SEQF6160.1|LR962599.1_3;Note=AAAGGCATGTTTTCCAATTCAAACATAGGAAAATTAGATGTAGAAAATTGGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962599.1	CCTyper	direct_repeat	112953	112975	23	+	.	ID=SEQF6160.1|LR962599.1_3_REPEAT3;Parent=SEQF6160.1|LR962599.1_3;Note=ATACGTCAAACGTAACAAATATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962599.1	CCTyper	binding_site	112976	113027	52	+	.	ID=SEQF6160.1|LR962599.1_3_SPACER3;Parent=SEQF6160.1|LR962599.1_3;Note=TACAGAATGTTTGCAGTATCTACAGTGAAAGAATTGAATTTAACCAATTGGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962599.1	CCTyper	direct_repeat	113028	113050	23	+	.	ID=SEQF6160.1|LR962599.1_3_REPEAT4;Parent=SEQF6160.1|LR962599.1_3;Note=ATACGTCAAACGTAACAAATATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962599.1	CCTyper	binding_site	113051	113102	52	+	.	ID=SEQF6160.1|LR962599.1_3_SPACER4;Parent=SEQF6160.1|LR962599.1_3;Note=GGAGGCACGTTCTTTAAAACAGGGATAGAAATACTAGACTTATCAACTTGGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962599.1	CCTyper	direct_repeat	113103	113125	23	+	.	ID=SEQF6160.1|LR962599.1_3_REPEAT5;Parent=SEQF6160.1|LR962599.1_3;Note=ATACAACGAATGTTACAACTATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6160.1|LR962598.1	CCTyper	OPERON	464274	473250	8977	+	.	ID=SEQF6160.1|LR962598.1@9;Genome_ID=SEQF6160.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_1_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_1_CAS-II-A,AbiEii_0_CAS-III;Positions=452,453,454,455,457;E-values=0.00e+00,9.40e-98,2.30e-47,3.20e-106,2.20e-04;CoverageSeq=0.998,0.931,0.982,0.991,0.406;CoverageHMM=0.998,0.996,0.957,1.0,0.447;Strand_Interference=1;Strand_Adaptation=1
SEQF6160.1|LR962598.1	CCTyper	CDS	472297	473250	318	+	.	ID=SEQF6160.1|LR962598.1_457_cas;Genome_ID=SEQF6160.1;Feature_type=CDS;Product=Cas Prediction : AbiEii_0_CAS-III;coding_strand=+;E-value=0.00022;Score=18.2;Coverage_Seq=0.4056603773584906;Coverage_Hmm=0.4471830985915493
SEQF6160.1|LR962598.1	CCTyper	CDS	468288	469154	289	+	.	ID=SEQF6160.1|LR962598.1_453_cas;Genome_ID=SEQF6160.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=9.4e-98;Score=324.1;Coverage_Seq=0.9307958477508651;Coverage_Hmm=0.9963636363636363
SEQF6160.1|LR962598.1	CCTyper	CDS	469151	469480	110	+	.	ID=SEQF6160.1|LR962598.1_454_cas;Genome_ID=SEQF6160.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=2.3e-47;Score=157.4;Coverage_Seq=0.9818181818181818;Coverage_Hmm=0.9568965517241379
SEQF6160.1|LR962598.1	CCTyper	CDS	464274	468287	1338	+	.	ID=SEQF6160.1|LR962598.1_452_cas;Genome_ID=SEQF6160.1;Feature_type=CDS;Product=Cas Prediction : Cas9_1_II;coding_strand=+;E-value=0.0;Score=1132.7;Coverage_Seq=0.9977578475336323;Coverage_Hmm=0.9982142857142857
SEQF6160.1|LR962598.1	CCTyper	CDS	469481	470140	220	+	.	ID=SEQF6160.1|LR962598.1_455_cas;Genome_ID=SEQF6160.1;Feature_type=CDS;Product=Cas Prediction : Csn2_1_CAS-II-A;coding_strand=+;E-value=3.2e-106;Score=351.2;Coverage_Seq=0.990909090909091;Coverage_Hmm=1.0