SEQF6598.2|AGGO01000048.1	CCTyper	repeat_region	2561	3739	1179	+	.	ID=SEQF6598.2|AGGO01000048.1_1;Genome_ID=SEQF6598.2;Note=Predictor:CCtyper;Start:2561;End:3739;Consensus_Repeat:ATTGAATGCCCCATACCCTCGTAAGGGGACGGAAAC;Number_of_Repeats:17;Repeat_Length:36;Average_Spacer_Length:35.4;Repeat_Identity:88.4;Spacer_Identity:44.3;Spacer_Length_Sem:0.2;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.971;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	direct_repeat	2561	2596	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_REPEAT1;Parent=SEQF6598.2|AGGO01000048.1_1;Note=ATTGAATGCCCCATACCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	binding_site	2597	2632	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_SPACER1;Parent=SEQF6598.2|AGGO01000048.1_1;Note=TTTGTCTCTTGTCTATTATAGTTTACTCTGGTCAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	direct_repeat	2633	2668	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_REPEAT2;Parent=SEQF6598.2|AGGO01000048.1_1;Note=ATTGAATGCCCCATACCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	binding_site	2669	2704	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_SPACER2;Parent=SEQF6598.2|AGGO01000048.1_1;Note=TAGTGGGCTGTATAACGTTCGTATAACGGTAGGCTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	direct_repeat	2705	2740	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_REPEAT3;Parent=SEQF6598.2|AGGO01000048.1_1;Note=ATTGAATGCCCCATACCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	binding_site	2741	2775	35	+	.	ID=SEQF6598.2|AGGO01000048.1_1_SPACER3;Parent=SEQF6598.2|AGGO01000048.1_1;Note=TTAACTGCTGAAAACAGTTCGGTGTTTTTCATTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	direct_repeat	2776	2811	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_REPEAT4;Parent=SEQF6598.2|AGGO01000048.1_1;Note=ATTGAATGCCCCATATCCTTGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	binding_site	2812	2845	34	+	.	ID=SEQF6598.2|AGGO01000048.1_1_SPACER4;Parent=SEQF6598.2|AGGO01000048.1_1;Note=GCGTCATCGTTAGGTTTAACCTTTGTATGAGACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	direct_repeat	2846	2881	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_REPEAT5;Parent=SEQF6598.2|AGGO01000048.1_1;Note=ATTGAATGCCCCATAGCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	binding_site	2882	2915	34	+	.	ID=SEQF6598.2|AGGO01000048.1_1_SPACER5;Parent=SEQF6598.2|AGGO01000048.1_1;Note=TGTTCAGTGTCCGGGTCATAGATTTTTCCGTCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	direct_repeat	2916	2951	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_REPEAT6;Parent=SEQF6598.2|AGGO01000048.1_1;Note=ATTGAAAGCCCCATACCTTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	binding_site	2952	2986	35	+	.	ID=SEQF6598.2|AGGO01000048.1_1_SPACER6;Parent=SEQF6598.2|AGGO01000048.1_1;Note=AGTAATTCTTCATGGTCTTTATCACTCATCTCATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	direct_repeat	2987	3022	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_REPEAT7;Parent=SEQF6598.2|AGGO01000048.1_1;Note=ATTGAATGCCCCATAGCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	binding_site	3023	3057	35	+	.	ID=SEQF6598.2|AGGO01000048.1_1_SPACER7;Parent=SEQF6598.2|AGGO01000048.1_1;Note=AATCCAACAAACGTTCCATGTTCTGTCATACCTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	direct_repeat	3058	3093	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_REPEAT8;Parent=SEQF6598.2|AGGO01000048.1_1;Note=ATTGAAAGCCCCATACCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	binding_site	3094	3129	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_SPACER8;Parent=SEQF6598.2|AGGO01000048.1_1;Note=CCTTGCCAGCCTTTTGACTGGCTCCTTTCTTTATCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	direct_repeat	3130	3165	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_REPEAT9;Parent=SEQF6598.2|AGGO01000048.1_1;Note=ATTGAATGCCCCGTATCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	binding_site	3166	3201	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_SPACER9;Parent=SEQF6598.2|AGGO01000048.1_1;Note=CATATAGTTCATCATGTAAGGGACTCGTCTTAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	direct_repeat	3202	3237	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_REPEAT10;Parent=SEQF6598.2|AGGO01000048.1_1;Note=ATTGAAAGCCCCATACCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	binding_site	3238	3272	35	+	.	ID=SEQF6598.2|AGGO01000048.1_1_SPACER10;Parent=SEQF6598.2|AGGO01000048.1_1;Note=GCTTTGATGTAGGTTGCGATTGGTGAGATGTAGCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	direct_repeat	3273	3308	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_REPEAT11;Parent=SEQF6598.2|AGGO01000048.1_1;Note=ATTGAATGCCCCATACCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	binding_site	3309	3344	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_SPACER11;Parent=SEQF6598.2|AGGO01000048.1_1;Note=GTGAAGGCTTTTTTGTGGTCCTCAACAGCTTCTAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	direct_repeat	3345	3380	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_REPEAT12;Parent=SEQF6598.2|AGGO01000048.1_1;Note=ATTGAATACCCCATAGCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	binding_site	3381	3416	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_SPACER12;Parent=SEQF6598.2|AGGO01000048.1_1;Note=TTTACCTTGGCCAATCTTATGTTAGCCCCTTTCCTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	direct_repeat	3417	3452	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_REPEAT13;Parent=SEQF6598.2|AGGO01000048.1_1;Note=ATTGAATACCCCATAGCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	binding_site	3453	3488	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_SPACER13;Parent=SEQF6598.2|AGGO01000048.1_1;Note=TTGATTAAAGATAGCCGTCACTTCTTCGGTTTGTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	direct_repeat	3489	3524	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_REPEAT14;Parent=SEQF6598.2|AGGO01000048.1_1;Note=ATTGAATGCCCCATACCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	binding_site	3525	3559	35	+	.	ID=SEQF6598.2|AGGO01000048.1_1_SPACER14;Parent=SEQF6598.2|AGGO01000048.1_1;Note=TTGTCATTCATAGGTTGACCGTTCGTTAGTCGTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	direct_repeat	3560	3595	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_REPEAT15;Parent=SEQF6598.2|AGGO01000048.1_1;Note=ATTGAATGTCCCATACCCTCGTAAGGGGGCGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	binding_site	3596	3630	35	+	.	ID=SEQF6598.2|AGGO01000048.1_1_SPACER15;Parent=SEQF6598.2|AGGO01000048.1_1;Note=ATTAAAACTTCGCCTCGTCGGTCAACTAGTTCATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	direct_repeat	3631	3666	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_REPEAT16;Parent=SEQF6598.2|AGGO01000048.1_1;Note=ATTGAAATCCTCATACCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	binding_site	3667	3703	37	+	.	ID=SEQF6598.2|AGGO01000048.1_1_SPACER16;Parent=SEQF6598.2|AGGO01000048.1_1;Note=TATAGAGTTAAGGCCTTGTCGCCTCTACGAACCAAGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	direct_repeat	3704	3739	36	+	.	ID=SEQF6598.2|AGGO01000048.1_1_REPEAT17;Parent=SEQF6598.2|AGGO01000048.1_1;Note=ATTGAATGCCCCATATCCTCGTAAGGGGACAGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6598.2|AGGO01000048.1	CCTyper	OPERON	1124	11233	10110	+	.	ID=SEQF6598.2|AGGO01000048.1@1;Genome_ID=SEQF6598.2;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=18.0;Genes=Cas1_0_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,Cas6_0_CAS-I-II-III-IV-V-VI,Cas10_1_CAS-III,Csm2gr11_7_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm5gr7_0_CAS-III-A-III-D,Csm6_1_CAS-III;Positions=2,3,4,5,6,7,8,9,10;E-values=1.70e-80,9.90e-21,7.40e-27,2.00e-186,4.00e-23,4.10e-72,1.70e-36,2.20e-31,5.40e-77;CoverageSeq=0.949,0.636,0.751,0.819,0.911,0.923,0.983,0.808,0.834;CoverageHMM=0.994,0.873,0.856,0.997,0.982,0.986,0.975,0.792,0.956;Strand_Interference=1;Strand_Adaptation=NA
SEQF6598.2|AGGO01000048.1	CCTyper	CDS	4675	6990	772	+	.	ID=SEQF6598.2|AGGO01000048.1_5_cas;Genome_ID=SEQF6598.2;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=+;E-value=2.0000000000000002e-186;Score=618.5;Coverage_Seq=0.8186528497409327;Coverage_Hmm=0.9969418960244648
SEQF6598.2|AGGO01000048.1	CCTyper	CDS	1124	2128	335	+	.	ID=SEQF6598.2|AGGO01000048.1_2_cas;Genome_ID=SEQF6598.2;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.7e-80;Score=267.6;Coverage_Seq=0.9492537313432836;Coverage_Hmm=0.9936908517350158
SEQF6598.2|AGGO01000048.1	CCTyper	CDS	2133	2462	110	+	.	ID=SEQF6598.2|AGGO01000048.1_3_cas;Genome_ID=SEQF6598.2;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=9.9e-21;Score=70.9;Coverage_Seq=0.6363636363636364;Coverage_Hmm=0.8734177215189873
SEQF6598.2|AGGO01000048.1	CCTyper	CDS	3960	4682	241	+	.	ID=SEQF6598.2|AGGO01000048.1_4_cas;Genome_ID=SEQF6598.2;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=7.4e-27;Score=92.1;Coverage_Seq=0.7510373443983402;Coverage_Hmm=0.8556701030927835
SEQF6598.2|AGGO01000048.1	CCTyper	CDS	6971	7339	123	+	.	ID=SEQF6598.2|AGGO01000048.1_6_cas;Genome_ID=SEQF6598.2;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=+;E-value=4.0000000000000004e-23;Score=79.7;Coverage_Seq=0.9105691056910569;Coverage_Hmm=0.9818181818181818
SEQF6598.2|AGGO01000048.1	CCTyper	CDS	7336	8001	222	+	.	ID=SEQF6598.2|AGGO01000048.1_7_cas;Genome_ID=SEQF6598.2;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=+;E-value=4.1e-72;Score=239.6;Coverage_Seq=0.9234234234234234;Coverage_Hmm=0.986046511627907
SEQF6598.2|AGGO01000048.1	CCTyper	CDS	8003	8902	300	+	.	ID=SEQF6598.2|AGGO01000048.1_8_cas;Genome_ID=SEQF6598.2;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=+;E-value=1.7e-36;Score=123.2;Coverage_Seq=0.9833333333333333;Coverage_Hmm=0.9746031746031746
SEQF6598.2|AGGO01000048.1	CCTyper	CDS	8904	9950	349	+	.	ID=SEQF6598.2|AGGO01000048.1_9_cas;Genome_ID=SEQF6598.2;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=+;E-value=2.2e-31;Score=106.6;Coverage_Seq=0.8080229226361032;Coverage_Hmm=0.7917808219178082
SEQF6598.2|AGGO01000048.1	CCTyper	CDS	9947	11233	429	+	.	ID=SEQF6598.2|AGGO01000048.1_10_cas;Genome_ID=SEQF6598.2;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=+;E-value=5.4e-77;Score=256.2;Coverage_Seq=0.8344988344988346;Coverage_Hmm=0.9555555555555556