SEQF6602.2|AGHC01000040.1	CCTyper	repeat_region	4549	5009	461	+	.	ID=SEQF6602.2|AGHC01000040.1_1;Genome_ID=SEQF6602.2;Note=Predictor:CCtyper;Start:4549;End:5009;Consensus_Repeat:ATTGAATGTCCCATACCCTCGTAAGGGGACGGAAAC;Number_of_Repeats:7;Repeat_Length:36;Average_Spacer_Length:34.8;Repeat_Identity:93.1;Spacer_Identity:43.5;Spacer_Length_Sem:0.3;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:III-D;Subtype_Probability:0.444;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6602.2|AGHC01000040.1	CCTyper	direct_repeat	4549	4584	36	+	.	ID=SEQF6602.2|AGHC01000040.1_1_REPEAT1;Parent=SEQF6602.2|AGHC01000040.1_1;Note=ATTGAATGTCCCATACCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6602.2|AGHC01000040.1	CCTyper	binding_site	4585	4618	34	+	.	ID=SEQF6602.2|AGHC01000040.1_1_SPACER1;Parent=SEQF6602.2|AGHC01000040.1_1;Note=TCTGGTGTCTCAATATTATAAACACTCATTTCTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6602.2|AGHC01000040.1	CCTyper	direct_repeat	4619	4654	36	+	.	ID=SEQF6602.2|AGHC01000040.1_1_REPEAT2;Parent=SEQF6602.2|AGHC01000040.1_1;Note=ATTGAATGTCCCATACCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6602.2|AGHC01000040.1	CCTyper	binding_site	4655	4689	35	+	.	ID=SEQF6602.2|AGHC01000040.1_1_SPACER2;Parent=SEQF6602.2|AGHC01000040.1_1;Note=TGATGTTTAGTAGTGTTTTGACGCTTTGTAACTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6602.2|AGHC01000040.1	CCTyper	direct_repeat	4690	4725	36	+	.	ID=SEQF6602.2|AGHC01000040.1_1_REPEAT3;Parent=SEQF6602.2|AGHC01000040.1_1;Note=ATTGAATGTCCCATACCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6602.2|AGHC01000040.1	CCTyper	binding_site	4726	4759	34	+	.	ID=SEQF6602.2|AGHC01000040.1_1_SPACER3;Parent=SEQF6602.2|AGHC01000040.1_1;Note=TTAAACAGTTGTTTGGTGTAGTAGTCTATAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6602.2|AGHC01000040.1	CCTyper	direct_repeat	4760	4795	36	+	.	ID=SEQF6602.2|AGHC01000040.1_1_REPEAT4;Parent=SEQF6602.2|AGHC01000040.1_1;Note=ATTGAATGTCCCATACCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6602.2|AGHC01000040.1	CCTyper	binding_site	4796	4831	36	+	.	ID=SEQF6602.2|AGHC01000040.1_1_SPACER4;Parent=SEQF6602.2|AGHC01000040.1_1;Note=AGAATATGAATCAAAGCATAGATGAATCGTCTAGCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6602.2|AGHC01000040.1	CCTyper	direct_repeat	4832	4867	36	+	.	ID=SEQF6602.2|AGHC01000040.1_1_REPEAT5;Parent=SEQF6602.2|AGHC01000040.1_1;Note=ATTGAATGTCCCATAGCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6602.2|AGHC01000040.1	CCTyper	binding_site	4868	4902	35	+	.	ID=SEQF6602.2|AGHC01000040.1_1_SPACER5;Parent=SEQF6602.2|AGHC01000040.1_1;Note=GGGTCTGCGATAGCATCATTGAAGATGAAGTCTGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6602.2|AGHC01000040.1	CCTyper	direct_repeat	4903	4938	36	+	.	ID=SEQF6602.2|AGHC01000040.1_1_REPEAT6;Parent=SEQF6602.2|AGHC01000040.1_1;Note=ATTGAATGCCCCATACCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6602.2|AGHC01000040.1	CCTyper	binding_site	4939	4973	35	+	.	ID=SEQF6602.2|AGHC01000040.1_1_SPACER6;Parent=SEQF6602.2|AGHC01000040.1_1;Note=GAAGCGTTCATTTGCATTAGGTTAGGTTTAACATA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6602.2|AGHC01000040.1	CCTyper	direct_repeat	4974	5009	36	+	.	ID=SEQF6602.2|AGHC01000040.1_1_REPEAT7;Parent=SEQF6602.2|AGHC01000040.1_1;Note=ATTGAATGCCCCATACCCTCGTAAGGGGACAGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6602.2|AGHC01000040.1	CCTyper	OPERON	3112	12506	9395	+	.	ID=SEQF6602.2|AGHC01000040.1@1;Genome_ID=SEQF6602.2;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=18.0;Genes=Cas1_0_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,Cas6_0_CAS-I-II-III-IV-V-VI,Cas10_1_CAS-III,Csm2gr11_7_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm5gr7_0_CAS-III-A-III-D,Csm6_1_CAS-III;Positions=2,3,4,5,6,7,8,9,10;E-values=8.50e-80,6.30e-21,6.60e-27,1.30e-186,3.50e-23,3.70e-72,2.20e-36,8.60e-32,1.70e-77;CoverageSeq=0.949,0.636,0.751,0.818,0.911,0.923,0.983,0.822,0.834;CoverageHMM=0.994,0.873,0.856,0.997,0.982,0.986,0.975,0.811,0.956;Strand_Interference=1;Strand_Adaptation=NA
SEQF6602.2|AGHC01000040.1	CCTyper	CDS	5945	8263	773	+	.	ID=SEQF6602.2|AGHC01000040.1_5_cas;Genome_ID=SEQF6602.2;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=+;E-value=1.3000000000000002e-186;Score=619.0;Coverage_Seq=0.8175937904269082;Coverage_Hmm=0.9969418960244648
SEQF6602.2|AGHC01000040.1	CCTyper	CDS	3112	4116	335	+	.	ID=SEQF6602.2|AGHC01000040.1_2_cas;Genome_ID=SEQF6602.2;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=8.500000000000001e-80;Score=265.1;Coverage_Seq=0.9492537313432836;Coverage_Hmm=0.9936908517350158
SEQF6602.2|AGHC01000040.1	CCTyper	CDS	4121	4450	110	+	.	ID=SEQF6602.2|AGHC01000040.1_3_cas;Genome_ID=SEQF6602.2;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=6.3e-21;Score=71.4;Coverage_Seq=0.6363636363636364;Coverage_Hmm=0.8734177215189873
SEQF6602.2|AGHC01000040.1	CCTyper	CDS	5230	5952	241	+	.	ID=SEQF6602.2|AGHC01000040.1_4_cas;Genome_ID=SEQF6602.2;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=6.6e-27;Score=92.2;Coverage_Seq=0.7510373443983402;Coverage_Hmm=0.8556701030927835
SEQF6602.2|AGHC01000040.1	CCTyper	CDS	8244	8612	123	+	.	ID=SEQF6602.2|AGHC01000040.1_6_cas;Genome_ID=SEQF6602.2;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=+;E-value=3.5e-23;Score=79.7;Coverage_Seq=0.9105691056910569;Coverage_Hmm=0.9818181818181818
SEQF6602.2|AGHC01000040.1	CCTyper	CDS	8609	9274	222	+	.	ID=SEQF6602.2|AGHC01000040.1_7_cas;Genome_ID=SEQF6602.2;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=+;E-value=3.7e-72;Score=239.6;Coverage_Seq=0.9234234234234234;Coverage_Hmm=0.986046511627907
SEQF6602.2|AGHC01000040.1	CCTyper	CDS	9276	10175	300	+	.	ID=SEQF6602.2|AGHC01000040.1_8_cas;Genome_ID=SEQF6602.2;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=+;E-value=2.2e-36;Score=122.6;Coverage_Seq=0.9833333333333333;Coverage_Hmm=0.9746031746031746
SEQF6602.2|AGHC01000040.1	CCTyper	CDS	10177	11223	349	+	.	ID=SEQF6602.2|AGHC01000040.1_9_cas;Genome_ID=SEQF6602.2;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=+;E-value=8.600000000000001e-32;Score=107.7;Coverage_Seq=0.8223495702005731;Coverage_Hmm=0.810958904109589
SEQF6602.2|AGHC01000040.1	CCTyper	CDS	11220	12506	429	+	.	ID=SEQF6602.2|AGHC01000040.1_10_cas;Genome_ID=SEQF6602.2;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=+;E-value=1.7e-77;Score=257.8;Coverage_Seq=0.8344988344988346;Coverage_Hmm=0.9555555555555556