SEQF6604.2|AGGH01000046.1	CCTyper	repeat_region	2621	3440	820	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1;Genome_ID=SEQF6604.2;Note=Predictor:CCtyper;Start:2621;End:3440;Consensus_Repeat:ATTGAATGCCCCATACCCTCGTAAGGGGACGGAAAC;Number_of_Repeats:12;Repeat_Length:36.2;Average_Spacer_Length:35;Repeat_Identity:88.7;Spacer_Identity:43.5;Spacer_Length_Sem:0.3;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.971;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	direct_repeat	2621	2656	36	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_REPEAT1;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=ATTGAATGCCCCATACCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	binding_site	2657	2692	36	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_SPACER1;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=TAGTGGGCTGTATAACGTTCGTATAACGGTAGGCTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	direct_repeat	2693	2728	36	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_REPEAT2;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=ATTGAATGCCCCATACCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	binding_site	2729	2763	35	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_SPACER2;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=TTAACTGCTGAAAACAGTTCGGTGTTTTTCATTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	direct_repeat	2764	2799	36	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_REPEAT3;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=ATTGAATGCCCCATATCCTTGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	binding_site	2800	2833	34	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_SPACER3;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=GCGTCATCGTTAGGTTTAACCTTTGTATGAGACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	direct_repeat	2834	2869	36	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_REPEAT4;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=ATTGAATGCCCCATAGCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	binding_site	2870	2903	34	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_SPACER4;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=TGTTCAGTGTCCGGGTCATAGATTTTTCCGTCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	direct_repeat	2904	2940	37	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_REPEAT5;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=ATTGAAAGCCCCATACCTTCGTAAGGGGACGGAAACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	binding_site	2941	2974	34	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_SPACER5;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=GTAATTCTTCATGGTCTTTATCACTCATCTCATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	direct_repeat	2975	3011	37	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_REPEAT6;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=ATTGAATGCCCCATAGCCTCGTAAGGGGACGGAAACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	binding_site	3012	3045	34	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_SPACER6;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=ATCCAACAAACGTTCCATGTTCTGTCATACCTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	direct_repeat	3046	3081	36	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_REPEAT7;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=ATTGAAAGCCCCATACCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	binding_site	3082	3117	36	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_SPACER7;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=CCTTGCCAGCCTTTTGACTGGCTCCTTTCTTTATCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	direct_repeat	3118	3153	36	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_REPEAT8;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=ATTGAATGCCCCGTATCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	binding_site	3154	3189	36	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_SPACER8;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=CATATAGTTCATCATGTAAGGGACTCGTCTTAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	direct_repeat	3190	3225	36	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_REPEAT9;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=ATTGAAAGCCCCATACCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	binding_site	3226	3260	35	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_SPACER9;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=GCTTTGATGTAGGTTGCGATTGGTGAGATGTAGCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	direct_repeat	3261	3296	36	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_REPEAT10;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=ATTGAATGCCCCATACCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	binding_site	3297	3332	36	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_SPACER10;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=GTGAAGGCTTTTTTGTGGTCCTCAACAGCTTCTAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	direct_repeat	3333	3368	36	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_REPEAT11;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=ATTGAATACCCCATAGCCTCGTAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	binding_site	3369	3403	35	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_SPACER11;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=TTGTCATTCATAGGTTGACCGTTCGTTAGTCGTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	direct_repeat	3404	3440	37	+	.	ID=SEQF6604.2|AGGH01000046.1-1_1_REPEAT12;Parent=SEQF6604.2|AGGH01000046.1-1_1;Note=ATTGAATGTCCCATACCCTCGTAAGGGGGCGGAAACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6604.2|AGGH01000046.1	CCTyper	OPERON	1184	11077	9894	+	.	ID=SEQF6604.2|AGGH01000046.1@1;Genome_ID=SEQF6604.2;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=18.0;Genes=Cas1_0_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,Cas6_0_CAS-I-II-III-IV-V-VI,Cas10_1_CAS-III,Csm2gr11_7_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm5gr7_0_CAS-III-A-III-D,Csm6_1_CAS-III;Positions=2,3,4,5,6,7,8,9,10;E-values=1.60e-80,9.10e-21,6.80e-27,1.80e-186,3.60e-23,3.80e-72,2.60e-36,2.00e-31,5.00e-77;CoverageSeq=0.949,0.636,0.751,0.819,0.911,0.923,0.983,0.808,0.834;CoverageHMM=0.994,0.873,0.856,0.997,0.982,0.986,0.975,0.792,0.956;Strand_Interference=1;Strand_Adaptation=NA
SEQF6604.2|AGGH01000046.1	CCTyper	CDS	4519	6834	772	+	.	ID=SEQF6604.2|AGGH01000046.1_5_cas;Genome_ID=SEQF6604.2;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=+;E-value=1.8000000000000001e-186;Score=618.5;Coverage_Seq=0.8186528497409327;Coverage_Hmm=0.9969418960244648
SEQF6604.2|AGGH01000046.1	CCTyper	CDS	1184	2188	335	+	.	ID=SEQF6604.2|AGGH01000046.1_2_cas;Genome_ID=SEQF6604.2;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.6000000000000001e-80;Score=267.6;Coverage_Seq=0.9492537313432836;Coverage_Hmm=0.9936908517350158
SEQF6604.2|AGGH01000046.1	CCTyper	CDS	2193	2522	110	+	.	ID=SEQF6604.2|AGGH01000046.1_3_cas;Genome_ID=SEQF6604.2;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=9.1e-21;Score=70.9;Coverage_Seq=0.6363636363636364;Coverage_Hmm=0.8734177215189873
SEQF6604.2|AGGH01000046.1	CCTyper	CDS	3804	4526	241	+	.	ID=SEQF6604.2|AGGH01000046.1_4_cas;Genome_ID=SEQF6604.2;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=6.800000000000001e-27;Score=92.1;Coverage_Seq=0.7510373443983402;Coverage_Hmm=0.8556701030927835
SEQF6604.2|AGGH01000046.1	CCTyper	CDS	6815	7183	123	+	.	ID=SEQF6604.2|AGGH01000046.1_6_cas;Genome_ID=SEQF6604.2;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=+;E-value=3.6e-23;Score=79.7;Coverage_Seq=0.9105691056910569;Coverage_Hmm=0.9818181818181818
SEQF6604.2|AGGH01000046.1	CCTyper	CDS	7180	7845	222	+	.	ID=SEQF6604.2|AGGH01000046.1_7_cas;Genome_ID=SEQF6604.2;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=+;E-value=3.8e-72;Score=239.6;Coverage_Seq=0.9234234234234234;Coverage_Hmm=0.986046511627907
SEQF6604.2|AGGH01000046.1	CCTyper	CDS	7847	8746	300	+	.	ID=SEQF6604.2|AGGH01000046.1_8_cas;Genome_ID=SEQF6604.2;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=+;E-value=2.6e-36;Score=122.4;Coverage_Seq=0.9833333333333333;Coverage_Hmm=0.9746031746031746
SEQF6604.2|AGGH01000046.1	CCTyper	CDS	8748	9794	349	+	.	ID=SEQF6604.2|AGGH01000046.1_9_cas;Genome_ID=SEQF6604.2;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=+;E-value=2e-31;Score=106.6;Coverage_Seq=0.8080229226361032;Coverage_Hmm=0.7917808219178082
SEQF6604.2|AGGH01000046.1	CCTyper	CDS	9791	11077	429	+	.	ID=SEQF6604.2|AGGH01000046.1_10_cas;Genome_ID=SEQF6604.2;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=+;E-value=5.0000000000000004e-77;Score=256.2;Coverage_Seq=0.8344988344988346;Coverage_Hmm=0.9555555555555556