SEQF6612.2|AGHK01000140.1	CCTyper	repeat_region	2533	3626	1094	+	.	ID=SEQF6612.2|AGHK01000140.1_1;Genome_ID=SEQF6612.2;Note=Predictor:CCtyper;Start:2533;End:3626;Consensus_Repeat:CCTCGTAAGGGGACGGAAACTTG;Number_of_Repeats:16;Repeat_Length:23;Average_Spacer_Length:48.4;Repeat_Identity:85.2;Spacer_Identity:54.7;Spacer_Length_Sem:0.2;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.989;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	direct_repeat	2533	2555	23	+	.	ID=SEQF6612.2|AGHK01000140.1_1_REPEAT1;Parent=SEQF6612.2|AGHK01000140.1_1;Note=CCTCGTAAGGGGACGGAAACTAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	binding_site	2556	2604	49	+	.	ID=SEQF6612.2|AGHK01000140.1_1_SPACER1;Parent=SEQF6612.2|AGHK01000140.1_1;Note=TGGGCTGTATAACGTTCGTATAACGGTAGGCTTATTGAATGCCCCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	direct_repeat	2605	2627	23	+	.	ID=SEQF6612.2|AGHK01000140.1_1_REPEAT2;Parent=SEQF6612.2|AGHK01000140.1_1;Note=CCTCGTAAGGGGACGGAAACTTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	binding_site	2628	2675	48	+	.	ID=SEQF6612.2|AGHK01000140.1_1_SPACER2;Parent=SEQF6612.2|AGHK01000140.1_1;Note=ACTGCTGAAAACAGTTCGGTGTTTTTCATTTCATTGAATGCCCCATAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	direct_repeat	2676	2698	23	+	.	ID=SEQF6612.2|AGHK01000140.1_1_REPEAT3;Parent=SEQF6612.2|AGHK01000140.1_1;Note=CCTTGTAAGGGGACGGAAACGCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	binding_site	2699	2745	47	+	.	ID=SEQF6612.2|AGHK01000140.1_1_SPACER3;Parent=SEQF6612.2|AGHK01000140.1_1;Note=TCATCGTTAGGTTTAACCTTTGTATGAGACAATTGAATGCCCCATAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	direct_repeat	2746	2768	23	+	.	ID=SEQF6612.2|AGHK01000140.1_1_REPEAT4;Parent=SEQF6612.2|AGHK01000140.1_1;Note=CCTCGTAAGGGGACGGAAACTGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	binding_site	2769	2815	47	+	.	ID=SEQF6612.2|AGHK01000140.1_1_SPACER4;Parent=SEQF6612.2|AGHK01000140.1_1;Note=TCAGTGTCCGGGTCATAGATTTTTCCGTCAAATTGAAAGCCCCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	direct_repeat	2816	2838	23	+	.	ID=SEQF6612.2|AGHK01000140.1_1_REPEAT5;Parent=SEQF6612.2|AGHK01000140.1_1;Note=CTTCGTAAGGGGACGGAAACAGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	binding_site	2839	2886	48	+	.	ID=SEQF6612.2|AGHK01000140.1_1_SPACER5;Parent=SEQF6612.2|AGHK01000140.1_1;Note=AATTCTTCATGGTCTTTATCACTCATCTCATGATTGAATGCCCCATAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	direct_repeat	2887	2909	23	+	.	ID=SEQF6612.2|AGHK01000140.1_1_REPEAT6;Parent=SEQF6612.2|AGHK01000140.1_1;Note=CCTCGTAAGGGGACGGAAACAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	binding_site	2910	2957	48	+	.	ID=SEQF6612.2|AGHK01000140.1_1_SPACER6;Parent=SEQF6612.2|AGHK01000140.1_1;Note=CCAACAAACGTTCCATGTTCTGTCATACCTTTATTGAAAGCCCCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	direct_repeat	2958	2980	23	+	.	ID=SEQF6612.2|AGHK01000140.1_1_REPEAT7;Parent=SEQF6612.2|AGHK01000140.1_1;Note=CCTCGTAAGGGGACGGAAACCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	binding_site	2981	3029	49	+	.	ID=SEQF6612.2|AGHK01000140.1_1_SPACER7;Parent=SEQF6612.2|AGHK01000140.1_1;Note=TGCCAGCCTTTTGACTGGCTCCTTTCTTTATCTATTGAATGCCCCGTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	direct_repeat	3030	3052	23	+	.	ID=SEQF6612.2|AGHK01000140.1_1_REPEAT8;Parent=SEQF6612.2|AGHK01000140.1_1;Note=CCTCGTAAGGGGACGGAAACCAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	binding_site	3053	3101	49	+	.	ID=SEQF6612.2|AGHK01000140.1_1_SPACER8;Parent=SEQF6612.2|AGHK01000140.1_1;Note=ATAGTTCATCATGTAAGGGACTCGTCTTAGACCATTGAAAGCCCCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	direct_repeat	3102	3124	23	+	.	ID=SEQF6612.2|AGHK01000140.1_1_REPEAT9;Parent=SEQF6612.2|AGHK01000140.1_1;Note=CCTCGTAAGGGGACGGAAACGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	binding_site	3125	3172	48	+	.	ID=SEQF6612.2|AGHK01000140.1_1_SPACER9;Parent=SEQF6612.2|AGHK01000140.1_1;Note=TTGATGTAGGTTGCGATTGGTGAGATGTAGCGATTGAATGCCCCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	direct_repeat	3173	3195	23	+	.	ID=SEQF6612.2|AGHK01000140.1_1_REPEAT10;Parent=SEQF6612.2|AGHK01000140.1_1;Note=CCTCGTAAGGGGACGGAAACGTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	binding_site	3196	3244	49	+	.	ID=SEQF6612.2|AGHK01000140.1_1_SPACER10;Parent=SEQF6612.2|AGHK01000140.1_1;Note=AAGGCTTTTTTGTGGTCCTCAACAGCTTCTAGGATTGAATACCCCATAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	direct_repeat	3245	3267	23	+	.	ID=SEQF6612.2|AGHK01000140.1_1_REPEAT11;Parent=SEQF6612.2|AGHK01000140.1_1;Note=CCTCGTAAGGGGACGGAAACTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	binding_site	3268	3316	49	+	.	ID=SEQF6612.2|AGHK01000140.1_1_SPACER11;Parent=SEQF6612.2|AGHK01000140.1_1;Note=ACCTTGGCCAATCTTATGTTAGCCCCTTTCCTTATTGAATACCCCATAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	direct_repeat	3317	3339	23	+	.	ID=SEQF6612.2|AGHK01000140.1_1_REPEAT12;Parent=SEQF6612.2|AGHK01000140.1_1;Note=CCTCGTAAGGGGACGGAAACTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	binding_site	3340	3388	49	+	.	ID=SEQF6612.2|AGHK01000140.1_1_SPACER12;Parent=SEQF6612.2|AGHK01000140.1_1;Note=ATTAAAGATAGCCGTCACTTCTTCGGTTTGTTTATTGAATGCCCCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	direct_repeat	3389	3411	23	+	.	ID=SEQF6612.2|AGHK01000140.1_1_REPEAT13;Parent=SEQF6612.2|AGHK01000140.1_1;Note=CCTCGTAAGGGGACGGAAACTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	binding_site	3412	3459	48	+	.	ID=SEQF6612.2|AGHK01000140.1_1_SPACER13;Parent=SEQF6612.2|AGHK01000140.1_1;Note=TCATTCATAGGTTGACCGTTCGTTAGTCGTTGATTGAATGTCCCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	direct_repeat	3460	3482	23	+	.	ID=SEQF6612.2|AGHK01000140.1_1_REPEAT14;Parent=SEQF6612.2|AGHK01000140.1_1;Note=CCTCGTAAGGGGGCGGAAACATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	binding_site	3483	3530	48	+	.	ID=SEQF6612.2|AGHK01000140.1_1_SPACER14;Parent=SEQF6612.2|AGHK01000140.1_1;Note=AAAACTTCGCCTCGTCGGTCAACTAGTTCATCATTGAAATCCTCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	direct_repeat	3531	3553	23	+	.	ID=SEQF6612.2|AGHK01000140.1_1_REPEAT15;Parent=SEQF6612.2|AGHK01000140.1_1;Note=CCTCGTAAGGGGACGGAAACTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	binding_site	3554	3603	50	+	.	ID=SEQF6612.2|AGHK01000140.1_1_SPACER15;Parent=SEQF6612.2|AGHK01000140.1_1;Note=AGAGTTAAGGCCTTGTCGCCTCTACGAACCAAGAATTGAATGCCCCATAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000140.1	CCTyper	direct_repeat	3604	3626	23	+	.	ID=SEQF6612.2|AGHK01000140.1_1_REPEAT16;Parent=SEQF6612.2|AGHK01000140.1_1;Note=CCTCGTAAGGGGACAGAAATTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6612.2|AGHK01000060.1	CCTyper	OPERON	3430	9742	6313	-	.	ID=SEQF6612.2|AGHK01000060.1@1;Genome_ID=SEQF6612.2;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=15.0;Genes=Csm6_1_CAS-III,Csm5gr7_0_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm2gr11_7_CAS-III-A,Cas10_1_CAS-III;Positions=2,3,4,5,6,7;E-values=4.70e-77,2.90e-32,2.20e-36,3.10e-72,3.50e-23,3.10e-163;CoverageSeq=0.834,0.802,0.983,0.923,0.911,0.809;CoverageHMM=0.956,0.792,0.975,0.986,0.982,0.873;Strand_Interference=-1;Strand_Adaptation=NA
SEQF6612.2|AGHK01000060.1	CCTyper	CDS	7673	9742	690	-	.	ID=SEQF6612.2|AGHK01000060.1_7_cas;Genome_ID=SEQF6612.2;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=-;E-value=3.1e-163;Score=541.7;Coverage_Seq=0.808695652173913;Coverage_Hmm=0.8730886850152905
SEQF6612.2|AGHK01000060.1	CCTyper	CDS	7324	7692	123	-	.	ID=SEQF6612.2|AGHK01000060.1_6_cas;Genome_ID=SEQF6612.2;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=-;E-value=3.5e-23;Score=79.7;Coverage_Seq=0.9105691056910569;Coverage_Hmm=0.9818181818181818
SEQF6612.2|AGHK01000060.1	CCTyper	CDS	6662	7327	222	-	.	ID=SEQF6612.2|AGHK01000060.1_5_cas;Genome_ID=SEQF6612.2;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=-;E-value=3.1e-72;Score=239.8;Coverage_Seq=0.9234234234234234;Coverage_Hmm=0.986046511627907
SEQF6612.2|AGHK01000060.1	CCTyper	CDS	5761	6660	300	-	.	ID=SEQF6612.2|AGHK01000060.1_4_cas;Genome_ID=SEQF6612.2;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=-;E-value=2.2e-36;Score=122.6;Coverage_Seq=0.9833333333333333;Coverage_Hmm=0.9746031746031746
SEQF6612.2|AGHK01000060.1	CCTyper	CDS	4713	5759	349	-	.	ID=SEQF6612.2|AGHK01000060.1_3_cas;Genome_ID=SEQF6612.2;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=-;E-value=2.9e-32;Score=109.3;Coverage_Seq=0.8022922636103151;Coverage_Hmm=0.7917808219178082
SEQF6612.2|AGHK01000060.1	CCTyper	CDS	3430	4716	429	-	.	ID=SEQF6612.2|AGHK01000060.1_2_cas;Genome_ID=SEQF6612.2;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=-;E-value=4.7e-77;Score=256.3;Coverage_Seq=0.8344988344988346;Coverage_Hmm=0.9555555555555556