SEQF6615.2|AGGC01000004.1	CCTyper	repeat_region	2679	3772	1094	+	.	ID=SEQF6615.2|AGGC01000004.1_1;Genome_ID=SEQF6615.2;Note=Predictor:CCtyper;Start:2679;End:3772;Consensus_Repeat:CCTCGTAAGGGGACGGAAACTTG;Number_of_Repeats:16;Repeat_Length:23;Average_Spacer_Length:48.4;Repeat_Identity:85.2;Spacer_Identity:54.7;Spacer_Length_Sem:0.2;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.989;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	direct_repeat	2679	2701	23	+	.	ID=SEQF6615.2|AGGC01000004.1_1_REPEAT1;Parent=SEQF6615.2|AGGC01000004.1_1;Note=CCTCGTAAGGGGACGGAAACTAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	binding_site	2702	2750	49	+	.	ID=SEQF6615.2|AGGC01000004.1_1_SPACER1;Parent=SEQF6615.2|AGGC01000004.1_1;Note=TGGGCTGTATAACGTTCGTATAACGGTAGGCTTATTGAATGCCCCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	direct_repeat	2751	2773	23	+	.	ID=SEQF6615.2|AGGC01000004.1_1_REPEAT2;Parent=SEQF6615.2|AGGC01000004.1_1;Note=CCTCGTAAGGGGACGGAAACTTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	binding_site	2774	2821	48	+	.	ID=SEQF6615.2|AGGC01000004.1_1_SPACER2;Parent=SEQF6615.2|AGGC01000004.1_1;Note=ACTGCTGAAAACAGTTCGGTGTTTTTCATTTCATTGAATGCCCCATAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	direct_repeat	2822	2844	23	+	.	ID=SEQF6615.2|AGGC01000004.1_1_REPEAT3;Parent=SEQF6615.2|AGGC01000004.1_1;Note=CCTTGTAAGGGGACGGAAACGCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	binding_site	2845	2891	47	+	.	ID=SEQF6615.2|AGGC01000004.1_1_SPACER3;Parent=SEQF6615.2|AGGC01000004.1_1;Note=TCATCGTTAGGTTTAACCTTTGTATGAGACAATTGAATGCCCCATAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	direct_repeat	2892	2914	23	+	.	ID=SEQF6615.2|AGGC01000004.1_1_REPEAT4;Parent=SEQF6615.2|AGGC01000004.1_1;Note=CCTCGTAAGGGGACGGAAACTGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	binding_site	2915	2961	47	+	.	ID=SEQF6615.2|AGGC01000004.1_1_SPACER4;Parent=SEQF6615.2|AGGC01000004.1_1;Note=TCAGTGTCCGGGTCATAGATTTTTCCGTCAAATTGAAAGCCCCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	direct_repeat	2962	2984	23	+	.	ID=SEQF6615.2|AGGC01000004.1_1_REPEAT5;Parent=SEQF6615.2|AGGC01000004.1_1;Note=CTTCGTAAGGGGACGGAAACAGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	binding_site	2985	3032	48	+	.	ID=SEQF6615.2|AGGC01000004.1_1_SPACER5;Parent=SEQF6615.2|AGGC01000004.1_1;Note=AATTCTTCATGGTCTTTATCACTCATCTCATGATTGAATGCCCCATAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	direct_repeat	3033	3055	23	+	.	ID=SEQF6615.2|AGGC01000004.1_1_REPEAT6;Parent=SEQF6615.2|AGGC01000004.1_1;Note=CCTCGTAAGGGGACGGAAACAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	binding_site	3056	3103	48	+	.	ID=SEQF6615.2|AGGC01000004.1_1_SPACER6;Parent=SEQF6615.2|AGGC01000004.1_1;Note=CCAACAAACGTTCCATGTTCTGTCATACCTTTATTGAAAGCCCCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	direct_repeat	3104	3126	23	+	.	ID=SEQF6615.2|AGGC01000004.1_1_REPEAT7;Parent=SEQF6615.2|AGGC01000004.1_1;Note=CCTCGTAAGGGGACGGAAACCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	binding_site	3127	3175	49	+	.	ID=SEQF6615.2|AGGC01000004.1_1_SPACER7;Parent=SEQF6615.2|AGGC01000004.1_1;Note=TGCCAGCCTTTTGACTGGCTCCTTTCTTTATCTATTGAATGCCCCGTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	direct_repeat	3176	3198	23	+	.	ID=SEQF6615.2|AGGC01000004.1_1_REPEAT8;Parent=SEQF6615.2|AGGC01000004.1_1;Note=CCTCGTAAGGGGACGGAAACCAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	binding_site	3199	3247	49	+	.	ID=SEQF6615.2|AGGC01000004.1_1_SPACER8;Parent=SEQF6615.2|AGGC01000004.1_1;Note=ATAGTTCATCATGTAAGGGACTCGTCTTAGACCATTGAAAGCCCCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	direct_repeat	3248	3270	23	+	.	ID=SEQF6615.2|AGGC01000004.1_1_REPEAT9;Parent=SEQF6615.2|AGGC01000004.1_1;Note=CCTCGTAAGGGGACGGAAACGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	binding_site	3271	3318	48	+	.	ID=SEQF6615.2|AGGC01000004.1_1_SPACER9;Parent=SEQF6615.2|AGGC01000004.1_1;Note=TTGATGTAGGTTGCGATTGGTGAGATGTAGCGATTGAATGCCCCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	direct_repeat	3319	3341	23	+	.	ID=SEQF6615.2|AGGC01000004.1_1_REPEAT10;Parent=SEQF6615.2|AGGC01000004.1_1;Note=CCTCGTAAGGGGACGGAAACGTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	binding_site	3342	3390	49	+	.	ID=SEQF6615.2|AGGC01000004.1_1_SPACER10;Parent=SEQF6615.2|AGGC01000004.1_1;Note=AAGGCTTTTTTGTGGTCCTCAACAGCTTCTAGGATTGAATACCCCATAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	direct_repeat	3391	3413	23	+	.	ID=SEQF6615.2|AGGC01000004.1_1_REPEAT11;Parent=SEQF6615.2|AGGC01000004.1_1;Note=CCTCGTAAGGGGACGGAAACTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	binding_site	3414	3462	49	+	.	ID=SEQF6615.2|AGGC01000004.1_1_SPACER11;Parent=SEQF6615.2|AGGC01000004.1_1;Note=ACCTTGGCCAATCTTATGTTAGCCCCTTTCCTTATTGAATACCCCATAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	direct_repeat	3463	3485	23	+	.	ID=SEQF6615.2|AGGC01000004.1_1_REPEAT12;Parent=SEQF6615.2|AGGC01000004.1_1;Note=CCTCGTAAGGGGACGGAAACTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	binding_site	3486	3534	49	+	.	ID=SEQF6615.2|AGGC01000004.1_1_SPACER12;Parent=SEQF6615.2|AGGC01000004.1_1;Note=ATTAAAGATAGCCGTCACTTCTTCGGTTTGTTTATTGAATGCCCCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	direct_repeat	3535	3557	23	+	.	ID=SEQF6615.2|AGGC01000004.1_1_REPEAT13;Parent=SEQF6615.2|AGGC01000004.1_1;Note=CCTCGTAAGGGGACGGAAACTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	binding_site	3558	3605	48	+	.	ID=SEQF6615.2|AGGC01000004.1_1_SPACER13;Parent=SEQF6615.2|AGGC01000004.1_1;Note=TCATTCATAGGTTGACCGTTCGTTAGTCGTTGATTGAATGTCCCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	direct_repeat	3606	3628	23	+	.	ID=SEQF6615.2|AGGC01000004.1_1_REPEAT14;Parent=SEQF6615.2|AGGC01000004.1_1;Note=CCTCGTAAGGGGGCGGAAACATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	binding_site	3629	3676	48	+	.	ID=SEQF6615.2|AGGC01000004.1_1_SPACER14;Parent=SEQF6615.2|AGGC01000004.1_1;Note=AAAACTTCGCCTCGTCGGTCAACTAGTTCATCATTGAAATCCTCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	direct_repeat	3677	3699	23	+	.	ID=SEQF6615.2|AGGC01000004.1_1_REPEAT15;Parent=SEQF6615.2|AGGC01000004.1_1;Note=CCTCGTAAGGGGACGGAAACTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	binding_site	3700	3749	50	+	.	ID=SEQF6615.2|AGGC01000004.1_1_SPACER15;Parent=SEQF6615.2|AGGC01000004.1_1;Note=AGAGTTAAGGCCTTGTCGCCTCTACGAACCAAGAATTGAATGCCCCATAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	direct_repeat	3750	3772	23	+	.	ID=SEQF6615.2|AGGC01000004.1_1_REPEAT16;Parent=SEQF6615.2|AGGC01000004.1_1;Note=CCTCGTAAGGGGACAGAAATTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6615.2|AGGC01000004.1	CCTyper	OPERON	1226	11263	10038	+	.	ID=SEQF6615.2|AGGC01000004.1@1;Genome_ID=SEQF6615.2;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=18.0;Genes=Cas1_0_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,Cas6_0_CAS-I-II-III-IV-V-VI,Cas10_1_CAS-III,Csm2gr11_7_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm5gr7_0_CAS-III-A-III-D,Csm6_1_CAS-III;Positions=2,3,4,5,6,7,8,9,10;E-values=1.50e-80,8.60e-21,6.40e-27,1.70e-186,3.40e-23,3.50e-72,2.50e-36,1.90e-31,4.70e-77;CoverageSeq=0.949,0.636,0.751,0.819,0.911,0.923,0.983,0.808,0.834;CoverageHMM=0.994,0.873,0.856,0.997,0.982,0.986,0.975,0.792,0.956;Strand_Interference=1;Strand_Adaptation=NA
SEQF6615.2|AGGC01000004.1	CCTyper	CDS	4705	7020	772	+	.	ID=SEQF6615.2|AGGC01000004.1_5_cas;Genome_ID=SEQF6615.2;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=+;E-value=1.7000000000000002e-186;Score=618.5;Coverage_Seq=0.8186528497409327;Coverage_Hmm=0.9969418960244648
SEQF6615.2|AGGC01000004.1	CCTyper	CDS	1226	2230	335	+	.	ID=SEQF6615.2|AGGC01000004.1_2_cas;Genome_ID=SEQF6615.2;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.5e-80;Score=267.6;Coverage_Seq=0.9492537313432836;Coverage_Hmm=0.9936908517350158
SEQF6615.2|AGGC01000004.1	CCTyper	CDS	2235	2564	110	+	.	ID=SEQF6615.2|AGGC01000004.1_3_cas;Genome_ID=SEQF6615.2;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=8.6e-21;Score=70.9;Coverage_Seq=0.6363636363636364;Coverage_Hmm=0.8734177215189873
SEQF6615.2|AGGC01000004.1	CCTyper	CDS	3990	4712	241	+	.	ID=SEQF6615.2|AGGC01000004.1_4_cas;Genome_ID=SEQF6615.2;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=6.4000000000000005e-27;Score=92.1;Coverage_Seq=0.7510373443983402;Coverage_Hmm=0.8556701030927835
SEQF6615.2|AGGC01000004.1	CCTyper	CDS	7001	7369	123	+	.	ID=SEQF6615.2|AGGC01000004.1_6_cas;Genome_ID=SEQF6615.2;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=+;E-value=3.4e-23;Score=79.7;Coverage_Seq=0.9105691056910569;Coverage_Hmm=0.9818181818181818
SEQF6615.2|AGGC01000004.1	CCTyper	CDS	7366	8031	222	+	.	ID=SEQF6615.2|AGGC01000004.1_7_cas;Genome_ID=SEQF6615.2;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=+;E-value=3.5e-72;Score=239.6;Coverage_Seq=0.9234234234234234;Coverage_Hmm=0.986046511627907
SEQF6615.2|AGGC01000004.1	CCTyper	CDS	8033	8932	300	+	.	ID=SEQF6615.2|AGGC01000004.1_8_cas;Genome_ID=SEQF6615.2;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=+;E-value=2.5e-36;Score=122.4;Coverage_Seq=0.9833333333333333;Coverage_Hmm=0.9746031746031746
SEQF6615.2|AGGC01000004.1	CCTyper	CDS	8934	9980	349	+	.	ID=SEQF6615.2|AGGC01000004.1_9_cas;Genome_ID=SEQF6615.2;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=+;E-value=1.9e-31;Score=106.6;Coverage_Seq=0.8080229226361032;Coverage_Hmm=0.7917808219178082
SEQF6615.2|AGGC01000004.1	CCTyper	CDS	9977	11263	429	+	.	ID=SEQF6615.2|AGGC01000004.1_10_cas;Genome_ID=SEQF6615.2;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=+;E-value=4.7e-77;Score=256.2;Coverage_Seq=0.8344988344988346;Coverage_Hmm=0.9555555555555556