SEQF6623.2|AGHP01000039.1	CCTyper	repeat_region	1737	2758	1022	+	.	ID=SEQF6623.2|AGHP01000039.1_1;Genome_ID=SEQF6623.2;Note=Predictor:CCtyper;Start:1737;End:2758;Consensus_Repeat:CCTCGTAAGGGGACGGAAACTTG;Number_of_Repeats:15;Repeat_Length:23;Average_Spacer_Length:48.4;Repeat_Identity:80.3;Spacer_Identity:54.2;Spacer_Length_Sem:0.2;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.989;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	direct_repeat	1737	1759	23	+	.	ID=SEQF6623.2|AGHP01000039.1_1_REPEAT1;Parent=SEQF6623.2|AGHP01000039.1_1;Note=CCTCGTAAGGGGACGGAAACTTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	binding_site	1760	1807	48	+	.	ID=SEQF6623.2|AGHP01000039.1_1_SPACER1;Parent=SEQF6623.2|AGHP01000039.1_1;Note=ACTGCTGAAAACAGTTCGGTGTTTTTCATTTCATTGAATGCCCCATAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	direct_repeat	1808	1830	23	+	.	ID=SEQF6623.2|AGHP01000039.1_1_REPEAT2;Parent=SEQF6623.2|AGHP01000039.1_1;Note=CCTTGTAAGGGGACGGAAACGCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	binding_site	1831	1877	47	+	.	ID=SEQF6623.2|AGHP01000039.1_1_SPACER2;Parent=SEQF6623.2|AGHP01000039.1_1;Note=TCATCGTTAGGTTTAACCTTTGTATGAGACAATTGAATGCCCCATAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	direct_repeat	1878	1900	23	+	.	ID=SEQF6623.2|AGHP01000039.1_1_REPEAT3;Parent=SEQF6623.2|AGHP01000039.1_1;Note=CCTCGTAAGGGGACGGAAACTGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	binding_site	1901	1947	47	+	.	ID=SEQF6623.2|AGHP01000039.1_1_SPACER3;Parent=SEQF6623.2|AGHP01000039.1_1;Note=TCAGTGTCCGGGTCATAGATTTTTCCGTCAAATTGAAAGCCCCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	direct_repeat	1948	1970	23	+	.	ID=SEQF6623.2|AGHP01000039.1_1_REPEAT4;Parent=SEQF6623.2|AGHP01000039.1_1;Note=CTTCGTAAGGGGACGGAAACAGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	binding_site	1971	2018	48	+	.	ID=SEQF6623.2|AGHP01000039.1_1_SPACER4;Parent=SEQF6623.2|AGHP01000039.1_1;Note=AATTCTTCATGGTCTTTATCACTCATCTCATGATTGAATGCCCCATAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	direct_repeat	2019	2041	23	+	.	ID=SEQF6623.2|AGHP01000039.1_1_REPEAT5;Parent=SEQF6623.2|AGHP01000039.1_1;Note=CCTCGTAAGGGGACGGAAACAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	binding_site	2042	2089	48	+	.	ID=SEQF6623.2|AGHP01000039.1_1_SPACER5;Parent=SEQF6623.2|AGHP01000039.1_1;Note=CCAACAAACGTTCCATGTTCTGTCATACCTTTATTGAAAGCCCCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	direct_repeat	2090	2112	23	+	.	ID=SEQF6623.2|AGHP01000039.1_1_REPEAT6;Parent=SEQF6623.2|AGHP01000039.1_1;Note=CCTCGTAAGGGGACGGAAACCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	binding_site	2113	2161	49	+	.	ID=SEQF6623.2|AGHP01000039.1_1_SPACER6;Parent=SEQF6623.2|AGHP01000039.1_1;Note=TGCCAGCCTTTTGACTGGCTCCTTTCTTTATCTATTGAATGCCCCGTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	direct_repeat	2162	2184	23	+	.	ID=SEQF6623.2|AGHP01000039.1_1_REPEAT7;Parent=SEQF6623.2|AGHP01000039.1_1;Note=CCTCGTAAGGGGACGGAAACCAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	binding_site	2185	2233	49	+	.	ID=SEQF6623.2|AGHP01000039.1_1_SPACER7;Parent=SEQF6623.2|AGHP01000039.1_1;Note=ATAGTTCATCATGTAAGGGACTCGTCTTAGACCATTGAAAGCCCCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	direct_repeat	2234	2256	23	+	.	ID=SEQF6623.2|AGHP01000039.1_1_REPEAT8;Parent=SEQF6623.2|AGHP01000039.1_1;Note=CCTCGTAAGGGGACGGAAACGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	binding_site	2257	2304	48	+	.	ID=SEQF6623.2|AGHP01000039.1_1_SPACER8;Parent=SEQF6623.2|AGHP01000039.1_1;Note=TTGATGTAGGTTGCGATTGGTGAGATGTAGCGATTGAATGCCCCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	direct_repeat	2305	2327	23	+	.	ID=SEQF6623.2|AGHP01000039.1_1_REPEAT9;Parent=SEQF6623.2|AGHP01000039.1_1;Note=CCTCGTAAGGGGACGGAAACGTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	binding_site	2328	2376	49	+	.	ID=SEQF6623.2|AGHP01000039.1_1_SPACER9;Parent=SEQF6623.2|AGHP01000039.1_1;Note=AAGGCTTTTTTGTGGTCCTCAACAGCTTCTAGGATTGAATACCCCATAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	direct_repeat	2377	2399	23	+	.	ID=SEQF6623.2|AGHP01000039.1_1_REPEAT10;Parent=SEQF6623.2|AGHP01000039.1_1;Note=CCTCGTAAGGGGACGGAAACTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	binding_site	2400	2448	49	+	.	ID=SEQF6623.2|AGHP01000039.1_1_SPACER10;Parent=SEQF6623.2|AGHP01000039.1_1;Note=ACCTTGGCCAATCTTATGTTAGCCCCTTTCCTTATTGAATACCCCATAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	direct_repeat	2449	2471	23	+	.	ID=SEQF6623.2|AGHP01000039.1_1_REPEAT11;Parent=SEQF6623.2|AGHP01000039.1_1;Note=CCTCGTAAGGGGACGGAAACTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	binding_site	2472	2520	49	+	.	ID=SEQF6623.2|AGHP01000039.1_1_SPACER11;Parent=SEQF6623.2|AGHP01000039.1_1;Note=ATTAAAGATAGCCGTCACTTCTTCGGTTTGTTTATTGAATGCCCCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	direct_repeat	2521	2543	23	+	.	ID=SEQF6623.2|AGHP01000039.1_1_REPEAT12;Parent=SEQF6623.2|AGHP01000039.1_1;Note=CCTCGTAAGGGGACGGAAACTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	binding_site	2544	2591	48	+	.	ID=SEQF6623.2|AGHP01000039.1_1_SPACER12;Parent=SEQF6623.2|AGHP01000039.1_1;Note=TCATTCATAGGTTGACCGTTCGTTAGTCGTTGATTGAATGTCCCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	direct_repeat	2592	2614	23	+	.	ID=SEQF6623.2|AGHP01000039.1_1_REPEAT13;Parent=SEQF6623.2|AGHP01000039.1_1;Note=CCTCGTAAGGGGGCGGAAACATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	binding_site	2615	2662	48	+	.	ID=SEQF6623.2|AGHP01000039.1_1_SPACER13;Parent=SEQF6623.2|AGHP01000039.1_1;Note=AAAACTTCGCCTCGTCGGTCAACTAGTTCATCATTGAAATCCTCATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	direct_repeat	2663	2685	23	+	.	ID=SEQF6623.2|AGHP01000039.1_1_REPEAT14;Parent=SEQF6623.2|AGHP01000039.1_1;Note=CCTCGTAAGGGGACGGAAACTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	binding_site	2686	2735	50	+	.	ID=SEQF6623.2|AGHP01000039.1_1_SPACER14;Parent=SEQF6623.2|AGHP01000039.1_1;Note=AGAGTTAAGGCCTTGTCGCCTCTACGAACCAAGAATTGAATGCCCCATAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	direct_repeat	2736	2758	23	+	.	ID=SEQF6623.2|AGHP01000039.1_1_REPEAT15;Parent=SEQF6623.2|AGHP01000039.1_1;Note=CCTCGTAAGGGGACAGAAATTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6623.2|AGHP01000039.1	CCTyper	OPERON	284	10249	9966	+	.	ID=SEQF6623.2|AGHP01000039.1@1;Genome_ID=SEQF6623.2;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=18.0;Genes=Cas1_0_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,Cas6_0_CAS-I-II-III-IV-V-VI,Cas10_1_CAS-III,Csm2gr11_7_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm5gr7_0_CAS-III-A-III-D,Csm6_1_CAS-III;Positions=1,2,3,4,5,6,7,8,9;E-values=1.50e-80,8.80e-21,6.60e-27,1.80e-186,3.50e-23,3.60e-72,2.50e-36,1.90e-31,4.80e-77;CoverageSeq=0.949,0.636,0.751,0.819,0.911,0.923,0.983,0.808,0.834;CoverageHMM=0.994,0.873,0.856,0.997,0.982,0.986,0.975,0.792,0.956;Strand_Interference=1;Strand_Adaptation=NA
SEQF6623.2|AGHP01000039.1	CCTyper	CDS	3691	6006	772	+	.	ID=SEQF6623.2|AGHP01000039.1_4_cas;Genome_ID=SEQF6623.2;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=+;E-value=1.8000000000000001e-186;Score=618.5;Coverage_Seq=0.8186528497409327;Coverage_Hmm=0.9969418960244648
SEQF6623.2|AGHP01000039.1	CCTyper	CDS	284	1288	335	+	.	ID=SEQF6623.2|AGHP01000039.1_1_cas;Genome_ID=SEQF6623.2;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.5e-80;Score=267.6;Coverage_Seq=0.9492537313432836;Coverage_Hmm=0.9936908517350158
SEQF6623.2|AGHP01000039.1	CCTyper	CDS	1293	1622	110	+	.	ID=SEQF6623.2|AGHP01000039.1_2_cas;Genome_ID=SEQF6623.2;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=8.8e-21;Score=70.9;Coverage_Seq=0.6363636363636364;Coverage_Hmm=0.8734177215189873
SEQF6623.2|AGHP01000039.1	CCTyper	CDS	2976	3698	241	+	.	ID=SEQF6623.2|AGHP01000039.1_3_cas;Genome_ID=SEQF6623.2;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=6.6e-27;Score=92.1;Coverage_Seq=0.7510373443983402;Coverage_Hmm=0.8556701030927835
SEQF6623.2|AGHP01000039.1	CCTyper	CDS	5987	6355	123	+	.	ID=SEQF6623.2|AGHP01000039.1_5_cas;Genome_ID=SEQF6623.2;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=+;E-value=3.5e-23;Score=79.7;Coverage_Seq=0.9105691056910569;Coverage_Hmm=0.9818181818181818
SEQF6623.2|AGHP01000039.1	CCTyper	CDS	6352	7017	222	+	.	ID=SEQF6623.2|AGHP01000039.1_6_cas;Genome_ID=SEQF6623.2;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=+;E-value=3.6e-72;Score=239.6;Coverage_Seq=0.9234234234234234;Coverage_Hmm=0.986046511627907
SEQF6623.2|AGHP01000039.1	CCTyper	CDS	7019	7918	300	+	.	ID=SEQF6623.2|AGHP01000039.1_7_cas;Genome_ID=SEQF6623.2;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=+;E-value=2.5e-36;Score=122.4;Coverage_Seq=0.9833333333333333;Coverage_Hmm=0.9746031746031746
SEQF6623.2|AGHP01000039.1	CCTyper	CDS	7920	8966	349	+	.	ID=SEQF6623.2|AGHP01000039.1_8_cas;Genome_ID=SEQF6623.2;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=+;E-value=1.9e-31;Score=106.6;Coverage_Seq=0.8080229226361032;Coverage_Hmm=0.7917808219178082
SEQF6623.2|AGHP01000039.1	CCTyper	CDS	8963	10249	429	+	.	ID=SEQF6623.2|AGHP01000039.1_9_cas;Genome_ID=SEQF6623.2;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=+;E-value=4.8e-77;Score=256.2;Coverage_Seq=0.8344988344988346;Coverage_Hmm=0.9555555555555556