SEQF6625.2|AGHD01000029.1	CCTyper	repeat_region	13423	14314	892	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1;Genome_ID=SEQF6625.2;Note=Predictor:CCtyper;Start:13423;End:14314;Consensus_Repeat:GTTTCCGTCCCCTTACGAGGGTATGGGGCATTCAAT;Number_of_Repeats:13;Repeat_Length:36.2;Average_Spacer_Length:35.1;Repeat_Identity:88.9;Spacer_Identity:43.7;Spacer_Length_Sem:0.3;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.971;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	direct_repeat	13423	13459	37	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_REPEAT1;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=TGTTTCCGCCCCCTTACGAGGGTATGGGACATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	binding_site	13460	13494	35	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_SPACER1;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=CAACGACTAACGAACGGTCAACCTATGAATGACAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	direct_repeat	13495	13530	36	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_REPEAT2;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=GTTTCCGTCCCCTTACGAGGGTATGGGGCATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	binding_site	13531	13566	36	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_SPACER2;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=AAACAAACCGAAGAAGTGACGGCTATCTTTAATCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	direct_repeat	13567	13602	36	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_REPEAT3;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=GTTTCCGTCCCCTTACGAGGCTATGGGGTATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	binding_site	13603	13638	36	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_SPACER3;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=AAGGAAAGGGGCTAACATAAGATTGGCCAAGGTAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	direct_repeat	13639	13674	36	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_REPEAT4;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=GTTTCCGTCCCCTTACGAGGCTATGGGGTATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	binding_site	13675	13710	36	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_SPACER4;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=CCTAGAAGCTGTTGAGGACCACAAAAAAGCCTTCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	direct_repeat	13711	13746	36	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_REPEAT5;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=GTTTCCGTCCCCTTACGAGGGTATGGGGCATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	binding_site	13747	13781	35	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_SPACER5;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=CGCTACATCTCACCAATCGCAACCTACATCAAAGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	direct_repeat	13782	13817	36	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_REPEAT6;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=GTTTCCGTCCCCTTACGAGGGTATGGGGCTTTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	binding_site	13818	13853	36	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_SPACER6;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=GGTCTAAGACGAGTCCCTTACATGATGAACTATATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	direct_repeat	13854	13889	36	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_REPEAT7;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=GTTTCCGTCCCCTTACGAGGATACGGGGCATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	binding_site	13890	13925	36	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_SPACER7;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=AGATAAAGAAAGGAGCCAGTCAAAAGGCTGGCAAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	direct_repeat	13926	13961	36	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_REPEAT8;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=GTTTCCGTCCCCTTACGAGGGTATGGGGCTTTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	binding_site	13962	13995	34	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_SPACER8;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=AAAGGTATGACAGAACATGGAACGTTTGTTGGAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	direct_repeat	13996	14032	37	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_REPEAT9;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=TGTTTCCGTCCCCTTACGAGGCTATGGGGCATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	binding_site	14033	14066	34	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_SPACER9;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=CATGAGATGAGTGATAAAGACCATGAAGAATTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	direct_repeat	14067	14103	37	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_REPEAT10;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=TGTTTCCGTCCCCTTACGAAGGTATGGGGCTTTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	binding_site	14104	14137	34	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_SPACER10;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=TTGACGGAAAAATCTATGACCCGGACACTGAACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	direct_repeat	14138	14173	36	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_REPEAT11;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=GTTTCCGTCCCCTTACGAGGCTATGGGGCATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	binding_site	14174	14207	34	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_SPACER11;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=TGTCTCATACAAAGGTTAAACCTAACGATGACGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	direct_repeat	14208	14243	36	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_REPEAT12;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=GTTTCCGTCCCCTTACAAGGATATGGGGCATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	binding_site	14244	14278	35	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_SPACER12;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=GAAATGAAAAACACCGAACTGTTTTCAGCAGTTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	direct_repeat	14279	14314	36	+	.	ID=SEQF6625.2|AGHD01000029.1-1_1_REPEAT13;Parent=SEQF6625.2|AGHD01000029.1-1_1;Note=GTTTCCGTCCCCTTACGAGGGTATGGGGCATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6625.2|AGHD01000029.1	CCTyper	OPERON	5786	15751	9966	-	.	ID=SEQF6625.2|AGHD01000029.1@1;Genome_ID=SEQF6625.2;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=18.0;Genes=Csm6_1_CAS-III,Csm5gr7_0_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm2gr11_7_CAS-III-A,Cas10_1_CAS-III,Cas6_0_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,Cas1_0_CAS-I-II-III-IV-V-VI;Positions=3,4,5,6,7,8,9,10,11;E-values=4.70e-77,1.90e-31,2.50e-36,3.60e-72,3.40e-23,1.70e-186,6.50e-27,8.60e-21,1.50e-80;CoverageSeq=0.834,0.808,0.983,0.923,0.911,0.819,0.751,0.636,0.949;CoverageHMM=0.956,0.792,0.975,0.986,0.982,0.997,0.856,0.873,0.994;Strand_Interference=-1;Strand_Adaptation=NA
SEQF6625.2|AGHD01000029.1	CCTyper	CDS	10029	12344	772	-	.	ID=SEQF6625.2|AGHD01000029.1_8_cas;Genome_ID=SEQF6625.2;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=-;E-value=1.7000000000000002e-186;Score=618.5;Coverage_Seq=0.8186528497409327;Coverage_Hmm=0.9969418960244648
SEQF6625.2|AGHD01000029.1	CCTyper	CDS	14747	15751	335	-	.	ID=SEQF6625.2|AGHD01000029.1_11_cas;Genome_ID=SEQF6625.2;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.5e-80;Score=267.6;Coverage_Seq=0.9492537313432836;Coverage_Hmm=0.9936908517350158
SEQF6625.2|AGHD01000029.1	CCTyper	CDS	14413	14742	110	-	.	ID=SEQF6625.2|AGHD01000029.1_10_cas;Genome_ID=SEQF6625.2;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=8.6e-21;Score=70.9;Coverage_Seq=0.6363636363636364;Coverage_Hmm=0.8734177215189873
SEQF6625.2|AGHD01000029.1	CCTyper	CDS	12337	13059	241	-	.	ID=SEQF6625.2|AGHD01000029.1_9_cas;Genome_ID=SEQF6625.2;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=6.5e-27;Score=92.1;Coverage_Seq=0.7510373443983402;Coverage_Hmm=0.8556701030927835
SEQF6625.2|AGHD01000029.1	CCTyper	CDS	9680	10048	123	-	.	ID=SEQF6625.2|AGHD01000029.1_7_cas;Genome_ID=SEQF6625.2;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=-;E-value=3.4e-23;Score=79.7;Coverage_Seq=0.9105691056910569;Coverage_Hmm=0.9818181818181818
SEQF6625.2|AGHD01000029.1	CCTyper	CDS	9018	9683	222	-	.	ID=SEQF6625.2|AGHD01000029.1_6_cas;Genome_ID=SEQF6625.2;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=-;E-value=3.6e-72;Score=239.6;Coverage_Seq=0.9234234234234234;Coverage_Hmm=0.986046511627907
SEQF6625.2|AGHD01000029.1	CCTyper	CDS	8117	9016	300	-	.	ID=SEQF6625.2|AGHD01000029.1_5_cas;Genome_ID=SEQF6625.2;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=-;E-value=2.5e-36;Score=122.4;Coverage_Seq=0.9833333333333333;Coverage_Hmm=0.9746031746031746
SEQF6625.2|AGHD01000029.1	CCTyper	CDS	7069	8115	349	-	.	ID=SEQF6625.2|AGHD01000029.1_4_cas;Genome_ID=SEQF6625.2;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=-;E-value=1.9e-31;Score=106.6;Coverage_Seq=0.8080229226361032;Coverage_Hmm=0.7917808219178082
SEQF6625.2|AGHD01000029.1	CCTyper	CDS	5786	7072	429	-	.	ID=SEQF6625.2|AGHD01000029.1_3_cas;Genome_ID=SEQF6625.2;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=-;E-value=4.7e-77;Score=256.2;Coverage_Seq=0.8344988344988346;Coverage_Hmm=0.9555555555555556