SEQF6627.2|AGGF01000028.1	CCTyper	repeat_region	11661	12908	1248	+	.	ID=SEQF6627.2|AGGF01000028.1_1;Genome_ID=SEQF6627.2;Note=Predictor:CCtyper;Start:11661;End:12908;Consensus_Repeat:GTTTCCGTCCCCTTACGAGGGTATGGGGCATTCAAT;Number_of_Repeats:18;Repeat_Length:36;Average_Spacer_Length:35.3;Repeat_Identity:89.2;Spacer_Identity:44.4;Spacer_Length_Sem:0.2;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.971;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	direct_repeat	11661	11696	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_REPEAT1;Parent=SEQF6627.2|AGGF01000028.1_1;Note=ATTTCTGTCCCCTTACGAGGATATGGGGCATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	binding_site	11697	11733	37	+	.	ID=SEQF6627.2|AGGF01000028.1_1_SPACER1;Parent=SEQF6627.2|AGGF01000028.1_1;Note=TCTTGGTTCGTAGAGGCGACAAGGCCTTAACTCTATA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	direct_repeat	11734	11769	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_REPEAT2;Parent=SEQF6627.2|AGGF01000028.1_1;Note=GTTTCCGTCCCCTTACGAGGGTATGAGGATTTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	binding_site	11770	11804	35	+	.	ID=SEQF6627.2|AGGF01000028.1_1_SPACER2;Parent=SEQF6627.2|AGGF01000028.1_1;Note=GATGAACTAGTTGACCGACGAGGCGAAGTTTTAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	direct_repeat	11805	11840	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_REPEAT3;Parent=SEQF6627.2|AGGF01000028.1_1;Note=GTTTCCGCCCCCTTACGAGGGTATGGGACATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	binding_site	11841	11875	35	+	.	ID=SEQF6627.2|AGGF01000028.1_1_SPACER3;Parent=SEQF6627.2|AGGF01000028.1_1;Note=CAACGACTAACGAACGGTCAACCTATGAATGACAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	direct_repeat	11876	11911	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_REPEAT4;Parent=SEQF6627.2|AGGF01000028.1_1;Note=GTTTCCGTCCCCTTACGAGGGTATGGGGCATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	binding_site	11912	11947	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_SPACER4;Parent=SEQF6627.2|AGGF01000028.1_1;Note=AAACAAACCGAAGAAGTGACGGCTATCTTTAATCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	direct_repeat	11948	11983	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_REPEAT5;Parent=SEQF6627.2|AGGF01000028.1_1;Note=GTTTCCGTCCCCTTACGAGGCTATGGGGTATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	binding_site	11984	12019	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_SPACER5;Parent=SEQF6627.2|AGGF01000028.1_1;Note=AAGGAAAGGGGCTAACATAAGATTGGCCAAGGTAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	direct_repeat	12020	12055	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_REPEAT6;Parent=SEQF6627.2|AGGF01000028.1_1;Note=GTTTCCGTCCCCTTACGAGGCTATGGGGTATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	binding_site	12056	12091	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_SPACER6;Parent=SEQF6627.2|AGGF01000028.1_1;Note=CCTAGAAGCTGTTGAGGACCACAAAAAAGCCTTCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	direct_repeat	12092	12127	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_REPEAT7;Parent=SEQF6627.2|AGGF01000028.1_1;Note=GTTTCCGTCCCCTTACGAGGGTATGGGGCATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	binding_site	12128	12162	35	+	.	ID=SEQF6627.2|AGGF01000028.1_1_SPACER7;Parent=SEQF6627.2|AGGF01000028.1_1;Note=CGCTACATCTCACCAATCGCAACCTACATCAAAGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	direct_repeat	12163	12198	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_REPEAT8;Parent=SEQF6627.2|AGGF01000028.1_1;Note=GTTTCCGTCCCCTTACGAGGGTATGGGGCTTTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	binding_site	12199	12234	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_SPACER8;Parent=SEQF6627.2|AGGF01000028.1_1;Note=GGTCTAAGACGAGTCCCTTACATGATGAACTATATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	direct_repeat	12235	12270	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_REPEAT9;Parent=SEQF6627.2|AGGF01000028.1_1;Note=GTTTCCGTCCCCTTACGAGGATACGGGGCATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	binding_site	12271	12306	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_SPACER9;Parent=SEQF6627.2|AGGF01000028.1_1;Note=AGATAAAGAAAGGAGCCAGTCAAAAGGCTGGCAAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	direct_repeat	12307	12342	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_REPEAT10;Parent=SEQF6627.2|AGGF01000028.1_1;Note=GTTTCCGTCCCCTTACGAGGGTATGGGGCTTTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	binding_site	12343	12377	35	+	.	ID=SEQF6627.2|AGGF01000028.1_1_SPACER10;Parent=SEQF6627.2|AGGF01000028.1_1;Note=AAAGGTATGACAGAACATGGAACGTTTGTTGGATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	direct_repeat	12378	12413	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_REPEAT11;Parent=SEQF6627.2|AGGF01000028.1_1;Note=GTTTCCGTCCCCTTACGAGGCTATGGGGCATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	binding_site	12414	12448	35	+	.	ID=SEQF6627.2|AGGF01000028.1_1_SPACER11;Parent=SEQF6627.2|AGGF01000028.1_1;Note=CATGAGATGAGTGATAAAGACCATGAAGAATTACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	direct_repeat	12449	12484	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_REPEAT12;Parent=SEQF6627.2|AGGF01000028.1_1;Note=GTTTCCGTCCCCTTACGAAGGTATGGGGCTTTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	binding_site	12485	12518	34	+	.	ID=SEQF6627.2|AGGF01000028.1_1_SPACER12;Parent=SEQF6627.2|AGGF01000028.1_1;Note=TTGACGGAAAAATCTATGACCCGGACACTGAACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	direct_repeat	12519	12554	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_REPEAT13;Parent=SEQF6627.2|AGGF01000028.1_1;Note=GTTTCCGTCCCCTTACGAGGCTATGGGGCATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	binding_site	12555	12588	34	+	.	ID=SEQF6627.2|AGGF01000028.1_1_SPACER13;Parent=SEQF6627.2|AGGF01000028.1_1;Note=TGTCTCATACAAAGGTTAAACCTAACGATGACGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	direct_repeat	12589	12624	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_REPEAT14;Parent=SEQF6627.2|AGGF01000028.1_1;Note=GTTTCCGTCCCCTTACAAGGATATGGGGCATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	binding_site	12625	12659	35	+	.	ID=SEQF6627.2|AGGF01000028.1_1_SPACER14;Parent=SEQF6627.2|AGGF01000028.1_1;Note=GAAATGAAAAACACCGAACTGTTTTCAGCAGTTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	direct_repeat	12660	12695	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_REPEAT15;Parent=SEQF6627.2|AGGF01000028.1_1;Note=GTTTCCGTCCCCTTACGAGGGTATGGGGCATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	binding_site	12696	12731	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_SPACER15;Parent=SEQF6627.2|AGGF01000028.1_1;Note=AAGCCTACCGTTATACGAACGTTATACAGCCCACTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	direct_repeat	12732	12767	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_REPEAT16;Parent=SEQF6627.2|AGGF01000028.1_1;Note=GTTTCCGTCCCCTTACGAGGGTATGGGGCATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	binding_site	12768	12801	34	+	.	ID=SEQF6627.2|AGGF01000028.1_1_SPACER16;Parent=SEQF6627.2|AGGF01000028.1_1;Note=TTAAAATCGCGCTTTCTGCAATAAATGGCTTCAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	direct_repeat	12802	12837	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_REPEAT17;Parent=SEQF6627.2|AGGF01000028.1_1;Note=GTTTCCGTCCCCTTACGAGGGTATGGGGCATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	binding_site	12838	12872	35	+	.	ID=SEQF6627.2|AGGF01000028.1_1_SPACER17;Parent=SEQF6627.2|AGGF01000028.1_1;Note=AAATGAAAGCAACAGCAACAACAGTGGTGTTAGGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	direct_repeat	12873	12908	36	+	.	ID=SEQF6627.2|AGGF01000028.1_1_REPEAT18;Parent=SEQF6627.2|AGGF01000028.1_1;Note=GTTTCCGTCCCCTTACGAGGGTATGGGGCATTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF6627.2|AGGF01000028.1	CCTyper	OPERON	4167	14345	10179	-	.	ID=SEQF6627.2|AGGF01000028.1@1;Genome_ID=SEQF6627.2;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=18.0;Genes=Csm6_1_CAS-III,Csm5gr7_0_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm2gr11_7_CAS-III-A,Cas10_1_CAS-III,Cas6_0_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,Cas1_0_CAS-I-II-III-IV-V-VI;Positions=3,4,5,6,7,8,9,10,11;E-values=4.90e-77,1.90e-31,2.60e-36,3.70e-72,3.60e-23,1.80e-186,6.70e-27,8.90e-21,1.50e-80;CoverageSeq=0.834,0.808,0.983,0.923,0.911,0.819,0.751,0.636,0.949;CoverageHMM=0.956,0.792,0.975,0.986,0.982,0.997,0.856,0.873,0.994;Strand_Interference=-1;Strand_Adaptation=NA
SEQF6627.2|AGGF01000028.1	CCTyper	CDS	8410	10725	772	-	.	ID=SEQF6627.2|AGGF01000028.1_8_cas;Genome_ID=SEQF6627.2;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=-;E-value=1.8000000000000001e-186;Score=618.5;Coverage_Seq=0.8186528497409327;Coverage_Hmm=0.9969418960244648
SEQF6627.2|AGGF01000028.1	CCTyper	CDS	13341	14345	335	-	.	ID=SEQF6627.2|AGGF01000028.1_11_cas;Genome_ID=SEQF6627.2;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.5e-80;Score=267.6;Coverage_Seq=0.9492537313432836;Coverage_Hmm=0.9936908517350158
SEQF6627.2|AGGF01000028.1	CCTyper	CDS	13007	13336	110	-	.	ID=SEQF6627.2|AGGF01000028.1_10_cas;Genome_ID=SEQF6627.2;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=8.9e-21;Score=70.9;Coverage_Seq=0.6363636363636364;Coverage_Hmm=0.8734177215189873
SEQF6627.2|AGGF01000028.1	CCTyper	CDS	10718	11440	241	-	.	ID=SEQF6627.2|AGGF01000028.1_9_cas;Genome_ID=SEQF6627.2;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=6.7e-27;Score=92.1;Coverage_Seq=0.7510373443983402;Coverage_Hmm=0.8556701030927835
SEQF6627.2|AGGF01000028.1	CCTyper	CDS	8061	8429	123	-	.	ID=SEQF6627.2|AGGF01000028.1_7_cas;Genome_ID=SEQF6627.2;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=-;E-value=3.6e-23;Score=79.7;Coverage_Seq=0.9105691056910569;Coverage_Hmm=0.9818181818181818
SEQF6627.2|AGGF01000028.1	CCTyper	CDS	7399	8064	222	-	.	ID=SEQF6627.2|AGGF01000028.1_6_cas;Genome_ID=SEQF6627.2;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=-;E-value=3.7e-72;Score=239.6;Coverage_Seq=0.9234234234234234;Coverage_Hmm=0.986046511627907
SEQF6627.2|AGGF01000028.1	CCTyper	CDS	6498	7397	300	-	.	ID=SEQF6627.2|AGGF01000028.1_5_cas;Genome_ID=SEQF6627.2;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=-;E-value=2.6e-36;Score=122.4;Coverage_Seq=0.9833333333333333;Coverage_Hmm=0.9746031746031746
SEQF6627.2|AGGF01000028.1	CCTyper	CDS	5450	6496	349	-	.	ID=SEQF6627.2|AGGF01000028.1_4_cas;Genome_ID=SEQF6627.2;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=-;E-value=1.9e-31;Score=106.6;Coverage_Seq=0.8080229226361032;Coverage_Hmm=0.7917808219178082
SEQF6627.2|AGGF01000028.1	CCTyper	CDS	4167	5453	429	-	.	ID=SEQF6627.2|AGGF01000028.1_3_cas;Genome_ID=SEQF6627.2;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=-;E-value=4.9e-77;Score=256.2;Coverage_Seq=0.8344988344988346;Coverage_Hmm=0.9555555555555556