SEQF7036.1|JAFEVV010000014.1	CCTyper	repeat_region	8312	8743	432	+	.	ID=SEQF7036.1|JAFEVV010000014.1_1;Genome_ID=SEQF7036.1;Note=Predictor:CCtyper;Start:8312;End:8743;Consensus_Repeat:GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Number_of_Repeats:7;Repeat_Length:36;Average_Spacer_Length:30;Repeat_Identity:89.6;Spacer_Identity:41.9;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.549;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7036.1|JAFEVV010000014.1	CCTyper	direct_repeat	8312	8347	36	+	.	ID=SEQF7036.1|JAFEVV010000014.1_1_REPEAT1;Parent=SEQF7036.1|JAFEVV010000014.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7036.1|JAFEVV010000014.1	CCTyper	binding_site	8348	8377	30	+	.	ID=SEQF7036.1|JAFEVV010000014.1_1_SPACER1;Parent=SEQF7036.1|JAFEVV010000014.1_1;Note=AAAAGGAAACGCCATTAATTAATATGGTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7036.1|JAFEVV010000014.1	CCTyper	direct_repeat	8378	8413	36	+	.	ID=SEQF7036.1|JAFEVV010000014.1_1_REPEAT2;Parent=SEQF7036.1|JAFEVV010000014.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7036.1|JAFEVV010000014.1	CCTyper	binding_site	8414	8443	30	+	.	ID=SEQF7036.1|JAFEVV010000014.1_1_SPACER2;Parent=SEQF7036.1|JAFEVV010000014.1_1;Note=GATTGAACCAGCTAGCGCAGTTAGTGCTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7036.1|JAFEVV010000014.1	CCTyper	direct_repeat	8444	8479	36	+	.	ID=SEQF7036.1|JAFEVV010000014.1_1_REPEAT3;Parent=SEQF7036.1|JAFEVV010000014.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7036.1|JAFEVV010000014.1	CCTyper	binding_site	8480	8509	30	+	.	ID=SEQF7036.1|JAFEVV010000014.1_1_SPACER3;Parent=SEQF7036.1|JAFEVV010000014.1_1;Note=CGCTAAAAGCTGTTGTGTCATCATAGTTAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7036.1|JAFEVV010000014.1	CCTyper	direct_repeat	8510	8545	36	+	.	ID=SEQF7036.1|JAFEVV010000014.1_1_REPEAT4;Parent=SEQF7036.1|JAFEVV010000014.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7036.1|JAFEVV010000014.1	CCTyper	binding_site	8546	8575	30	+	.	ID=SEQF7036.1|JAFEVV010000014.1_1_SPACER4;Parent=SEQF7036.1|JAFEVV010000014.1_1;Note=TAAATATTTTCAATTAGACAATAGACAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7036.1|JAFEVV010000014.1	CCTyper	direct_repeat	8576	8611	36	+	.	ID=SEQF7036.1|JAFEVV010000014.1_1_REPEAT5;Parent=SEQF7036.1|JAFEVV010000014.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7036.1|JAFEVV010000014.1	CCTyper	binding_site	8612	8641	30	+	.	ID=SEQF7036.1|JAFEVV010000014.1_1_SPACER5;Parent=SEQF7036.1|JAFEVV010000014.1_1;Note=TGCCTATGTATTCGGACATGACTTGCCACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7036.1|JAFEVV010000014.1	CCTyper	direct_repeat	8642	8677	36	+	.	ID=SEQF7036.1|JAFEVV010000014.1_1_REPEAT6;Parent=SEQF7036.1|JAFEVV010000014.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7036.1|JAFEVV010000014.1	CCTyper	binding_site	8678	8707	30	+	.	ID=SEQF7036.1|JAFEVV010000014.1_1_SPACER6;Parent=SEQF7036.1|JAFEVV010000014.1_1;Note=ATGTGAAAAGAAAGTAACTACTACATTTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7036.1|JAFEVV010000014.1	CCTyper	direct_repeat	8708	8743	36	+	.	ID=SEQF7036.1|JAFEVV010000014.1_1_REPEAT7;Parent=SEQF7036.1|JAFEVV010000014.1_1;Note=GTTTTAGAGCCATGTTAGTTACTGATTTACTAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7036.1|JAFEVV010000016.1	CCTyper	OPERON	12249	21528	9280	+	.	ID=SEQF7036.1|JAFEVV010000016.1@1;Genome_ID=SEQF7036.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-C;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=I-C;Best_score=21.0;Genes=WYL_3_CAS-I-II-III-IV-V-VI,Cas3_1_CAS-I,Cas5_0_IC,Cas8c_0_CAS-I-C,Cas7_0_IC,Cas4_0_I-II,Cas1_0_IC,Cas2_4_CAS-I-II-III-IV-V-VI;Positions=15,16,17,19,20,21,24,25;E-values=4.80e-14,1.10e-103,7.30e-92,2.60e-97,2.50e-123,2.00e-31,7.80e-62,2.00e-30;CoverageSeq=0.517,0.895,0.81,0.979,0.969,0.844,0.985,0.929;CoverageHMM=0.884,0.958,0.995,0.75,0.996,0.983,0.382,0.978;Strand_Interference=1;Strand_Adaptation=1
SEQF7036.1|JAFEVV010000014.1	CCTyper	OPERON	1578	7474	5897	+	.	ID=SEQF7036.1|JAFEVV010000014.1@1;Genome_ID=SEQF7036.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_1_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_1_CAS-II-A;Positions=3,4,5,6;E-values=0.00e+00,1.20e-102,1.40e-51,1.00e-106;CoverageSeq=0.996,0.931,0.965,0.982;CoverageHMM=0.999,0.996,0.983,0.995;Strand_Interference=1;Strand_Adaptation=1
SEQF7036.1|JAFEVV010000016.1	CCTyper	CDS	20829	21224	132	+	.	ID=SEQF7036.1|JAFEVV010000016.1_24_cas;Genome_ID=SEQF7036.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IC;coding_strand=+;E-value=7.799999999999999e-62;Score=206.1;Coverage_Seq=0.9848484848484849;Coverage_Hmm=0.38235294117647056
SEQF7036.1|JAFEVV010000014.1	CCTyper	CDS	5615	6481	289	+	.	ID=SEQF7036.1|JAFEVV010000014.1_4_cas;Genome_ID=SEQF7036.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.2e-102;Score=339.6;Coverage_Seq=0.9307958477508651;Coverage_Hmm=0.9963636363636363
SEQF7036.1|JAFEVV010000016.1	CCTyper	CDS	21235	21528	98	+	.	ID=SEQF7036.1|JAFEVV010000016.1_25_cas;Genome_ID=SEQF7036.1;Feature_type=CDS;Product=Cas Prediction : Cas2_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.9999999999999998e-30;Score=101.8;Coverage_Seq=0.9285714285714286;Coverage_Hmm=0.9775280898876404
SEQF7036.1|JAFEVV010000014.1	CCTyper	CDS	6478	6822	115	+	.	ID=SEQF7036.1|JAFEVV010000014.1_5_cas;Genome_ID=SEQF7036.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.4e-51;Score=170.4;Coverage_Seq=0.9652173913043478;Coverage_Hmm=0.9827586206896551
SEQF7036.1|JAFEVV010000016.1	CCTyper	CDS	13474	15876	801	+	.	ID=SEQF7036.1|JAFEVV010000016.1_16_cas;Genome_ID=SEQF7036.1;Feature_type=CDS;Product=Cas Prediction : Cas3_1_CAS-I;coding_strand=+;E-value=1.1e-103;Score=344.7;Coverage_Seq=0.8951310861423221;Coverage_Hmm=0.9583892617449664
SEQF7036.1|JAFEVV010000016.1	CCTyper	CDS	19533	20204	224	+	.	ID=SEQF7036.1|JAFEVV010000016.1_21_cas;Genome_ID=SEQF7036.1;Feature_type=CDS;Product=Cas Prediction : Cas4_0_I-II;coding_strand=+;E-value=2e-31;Score=105.9;Coverage_Seq=0.84375;Coverage_Hmm=0.9833333333333333
SEQF7036.1|JAFEVV010000016.1	CCTyper	CDS	15977	16720	248	+	.	ID=SEQF7036.1|JAFEVV010000016.1_17_cas;Genome_ID=SEQF7036.1;Feature_type=CDS;Product=Cas Prediction : Cas5_0_IC;coding_strand=+;E-value=7.3e-92;Score=303.8;Coverage_Seq=0.8104838709677419;Coverage_Hmm=0.9950738916256158
SEQF7036.1|JAFEVV010000016.1	CCTyper	CDS	18656	19531	292	+	.	ID=SEQF7036.1|JAFEVV010000016.1_20_cas;Genome_ID=SEQF7036.1;Feature_type=CDS;Product=Cas Prediction : Cas7_0_IC;coding_strand=+;E-value=2.5e-123;Score=407.7;Coverage_Seq=0.9691780821917808;Coverage_Hmm=0.9964788732394366
SEQF7036.1|JAFEVV010000016.1	CCTyper	CDS	17243	18652	470	+	.	ID=SEQF7036.1|JAFEVV010000016.1_19_cas;Genome_ID=SEQF7036.1;Feature_type=CDS;Product=Cas Prediction : Cas8c_0_CAS-I-C;coding_strand=+;E-value=2.6e-97;Score=323.5;Coverage_Seq=0.9787234042553191;Coverage_Hmm=0.75
SEQF7036.1|JAFEVV010000014.1	CCTyper	CDS	1578	5615	1346	+	.	ID=SEQF7036.1|JAFEVV010000014.1_3_cas;Genome_ID=SEQF7036.1;Feature_type=CDS;Product=Cas Prediction : Cas9_1_II;coding_strand=+;E-value=0.0;Score=1274.2;Coverage_Seq=0.9955423476968797;Coverage_Hmm=0.9991071428571429
SEQF7036.1|JAFEVV010000014.1	CCTyper	CDS	6812	7474	221	+	.	ID=SEQF7036.1|JAFEVV010000014.1_6_cas;Genome_ID=SEQF7036.1;Feature_type=CDS;Product=Cas Prediction : Csn2_1_CAS-II-A;coding_strand=+;E-value=1e-106;Score=352.3;Coverage_Seq=0.9819004524886877;Coverage_Hmm=0.9954128440366973
SEQF7036.1|JAFEVV010000016.1	CCTyper	CDS	12249	13223	325	+	.	ID=SEQF7036.1|JAFEVV010000016.1_15_cas;Genome_ID=SEQF7036.1;Feature_type=CDS;Product=Cas Prediction : WYL_3_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=4.8e-14;Score=49.6;Coverage_Seq=0.5169230769230769;Coverage_Hmm=0.8837209302325582