SEQF7091.1|JAJBFN010000003.1	CCTyper	repeat_region	265617	265889	273	+	.	ID=SEQF7091.1|JAJBFN010000003.1_1;Genome_ID=SEQF7091.1;Note=Predictor:CCtyper;Start:265617;End:265889;Consensus_Repeat:ATTTTACCCGCACGAGCGGGGGTGATCCT;Number_of_Repeats:5;Repeat_Length:29;Average_Spacer_Length:32.0;Repeat_Identity:97.3;Spacer_Identity:54.6;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:I-E;Subtype_Probability:0.288;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000003.1	CCTyper	direct_repeat	265617	265645	29	+	.	ID=SEQF7091.1|JAJBFN010000003.1_1_REPEAT1;Parent=SEQF7091.1|JAJBFN010000003.1_1;Note=ATTTTACCCGCACGAGCGGGGGTGATCCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000003.1	CCTyper	binding_site	265646	265677	32	+	.	ID=SEQF7091.1|JAJBFN010000003.1_1_SPACER1;Parent=SEQF7091.1|JAJBFN010000003.1_1;Note=AAATCCCAAATGCTAACCAACCAACAAAATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000003.1	CCTyper	direct_repeat	265678	265706	29	+	.	ID=SEQF7091.1|JAJBFN010000003.1_1_REPEAT2;Parent=SEQF7091.1|JAJBFN010000003.1_1;Note=ATTTTACCCGCACGAGCGGGGGTGATCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000003.1	CCTyper	binding_site	265707	265738	32	+	.	ID=SEQF7091.1|JAJBFN010000003.1_1_SPACER2;Parent=SEQF7091.1|JAJBFN010000003.1_1;Note=AAAATCTAGTTCAATTGCTAAACCGTTTATAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000003.1	CCTyper	direct_repeat	265739	265767	29	+	.	ID=SEQF7091.1|JAJBFN010000003.1_1_REPEAT3;Parent=SEQF7091.1|JAJBFN010000003.1_1;Note=ATTTTACCCGCACGAGCGGGGGTGATCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000003.1	CCTyper	binding_site	265768	265799	32	+	.	ID=SEQF7091.1|JAJBFN010000003.1_1_SPACER3;Parent=SEQF7091.1|JAJBFN010000003.1_1;Note=GAGTTTCTAGAAATTCTATAGCGTCTCTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000003.1	CCTyper	direct_repeat	265800	265828	29	+	.	ID=SEQF7091.1|JAJBFN010000003.1_1_REPEAT4;Parent=SEQF7091.1|JAJBFN010000003.1_1;Note=ATTTTACCCGCACGAGCGGGGGTGATCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000003.1	CCTyper	binding_site	265829	265860	32	+	.	ID=SEQF7091.1|JAJBFN010000003.1_1_SPACER4;Parent=SEQF7091.1|JAJBFN010000003.1_1;Note=AAAATCTAGTTCAATTGCTAAACCGTTTATAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000003.1	CCTyper	direct_repeat	265861	265889	29	+	.	ID=SEQF7091.1|JAJBFN010000003.1_1_REPEAT5;Parent=SEQF7091.1|JAJBFN010000003.1_1;Note=ATTTTACCCGCACGAGCGGGGGTGATCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000011.1	CCTyper	repeat_region	1324	1758	435	+	.	ID=SEQF7091.1|JAJBFN010000011.1_2;Genome_ID=SEQF7091.1;Note=Predictor:CCtyper;Start:1324;End:1758;Consensus_Repeat:ATTTCAATCCACGCACCCGTGAAGGGTGCGAC;Number_of_Repeats:7;Repeat_Length:32;Average_Spacer_Length:35.2;Repeat_Identity:86.4;Spacer_Identity:42.4;Spacer_Length_Sem:0.7;Trusted:True;Cas_Type_Prediction: I-C;Cas_Subtype_Prediction:I-C;Subtype_Probability:0.991;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000011.1	CCTyper	direct_repeat	1324	1355	32	+	.	ID=SEQF7091.1|JAJBFN010000011.1_2_REPEAT1;Parent=SEQF7091.1|JAJBFN010000011.1_2;Note=AAAAAACAAACCCAACCTTTAAAGGGTGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000011.1	CCTyper	binding_site	1356	1390	35	+	.	ID=SEQF7091.1|JAJBFN010000011.1_2_SPACER1;Parent=SEQF7091.1|JAJBFN010000011.1_2;Note=AAAAACCAGAAGTGTTTATTTCAGGATTTTTTGAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000011.1	CCTyper	direct_repeat	1391	1422	32	+	.	ID=SEQF7091.1|JAJBFN010000011.1_2_REPEAT2;Parent=SEQF7091.1|JAJBFN010000011.1_2;Note=ATTTCAATCCACGCACCCGTGAAGGGTGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000011.1	CCTyper	binding_site	1423	1455	33	+	.	ID=SEQF7091.1|JAJBFN010000011.1_2_SPACER2;Parent=SEQF7091.1|JAJBFN010000011.1_2;Note=TTATCAAGTTGTCCATACTGAGCTTTCATAATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000011.1	CCTyper	direct_repeat	1456	1487	32	+	.	ID=SEQF7091.1|JAJBFN010000011.1_2_REPEAT3;Parent=SEQF7091.1|JAJBFN010000011.1_2;Note=ATTTCAATCCACGCACCCGTGAAGGGTGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000011.1	CCTyper	binding_site	1488	1522	35	+	.	ID=SEQF7091.1|JAJBFN010000011.1_2_SPACER3;Parent=SEQF7091.1|JAJBFN010000011.1_2;Note=TCGCTGTTTGACTGACACCGTTATCCACAATTTCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000011.1	CCTyper	direct_repeat	1523	1554	32	+	.	ID=SEQF7091.1|JAJBFN010000011.1_2_REPEAT4;Parent=SEQF7091.1|JAJBFN010000011.1_2;Note=ATTTCAATCCACGCACCCGTGAAGGGTGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000011.1	CCTyper	binding_site	1555	1591	37	+	.	ID=SEQF7091.1|JAJBFN010000011.1_2_SPACER4;Parent=SEQF7091.1|JAJBFN010000011.1_2;Note=TTTTGTCGTTTGCGAGCATTCTCACCATTCTTTGCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000011.1	CCTyper	direct_repeat	1592	1623	32	+	.	ID=SEQF7091.1|JAJBFN010000011.1_2_REPEAT5;Parent=SEQF7091.1|JAJBFN010000011.1_2;Note=ATTTCAATCCACGCACCCGTGAAGGGTGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000011.1	CCTyper	binding_site	1624	1660	37	+	.	ID=SEQF7091.1|JAJBFN010000011.1_2_SPACER5;Parent=SEQF7091.1|JAJBFN010000011.1_2;Note=TGGCCAAGCGAGAAGCAACAAAGGATACACATTCTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000011.1	CCTyper	direct_repeat	1661	1692	32	+	.	ID=SEQF7091.1|JAJBFN010000011.1_2_REPEAT6;Parent=SEQF7091.1|JAJBFN010000011.1_2;Note=ATTTCAATCCACGCACCCGTGAAGGGTGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000011.1	CCTyper	binding_site	1693	1726	34	+	.	ID=SEQF7091.1|JAJBFN010000011.1_2_SPACER6;Parent=SEQF7091.1|JAJBFN010000011.1_2;Note=TCTCTCATTTCCTTTTTCATTACGGATCATCCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000011.1	CCTyper	direct_repeat	1727	1758	32	+	.	ID=SEQF7091.1|JAJBFN010000011.1_2_REPEAT7;Parent=SEQF7091.1|JAJBFN010000011.1_2;Note=ATTTCAATCCACGCACCCGTGAAGGGTGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7091.1|JAJBFN010000003.1	CCTyper	OPERON	253972	264628	10657	+	.	ID=SEQF7091.1|JAJBFN010000003.1@6;Genome_ID=SEQF7091.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-E;Complete_Interference=100%;Complete_Adaptation=50%;Best_type=I-E;Best_score=24.0;Genes=WYL_3_CAS-I-II-III-IV-V-VI,Cas3_0_CAS-I,Cas8e_4_CAS-I-E,Cse2gr11_5_CAS-I-E,Cas7_1_CAS-I-E,Cas5_0_IE,Cas6e_2_CAS-I-II-III-IV-V-VI,Cas1_0_IE,DEDDh_0_CAS-I-II-III-IV-V-VI;Positions=261,262,263,264,265,266,267,268,269;E-values=1.20e-09,9.70e-70,1.90e-91,1.20e-67,2.70e-113,2.30e-42,7.60e-47,1.60e-107,4.80e-35;CoverageSeq=0.485,0.438,0.888,0.95,0.943,0.862,0.972,0.854,0.512;CoverageHMM=0.89,0.983,0.994,0.975,0.997,0.974,0.995,0.993,0.981;Strand_Interference=1;Strand_Adaptation=1
SEQF7091.1|JAJBFN010000011.1	CCTyper	OPERON	1906	11172	9267	-	.	ID=SEQF7091.1|JAJBFN010000011.1@1;Genome_ID=SEQF7091.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-C;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=I-C;Best_score=21.0;Genes=Cas2_4_CAS-I-II-III-IV-V-VI,Cas1_0_IC,Cas4_0_I-II,Cas7_0_IC,Cas8c_0_CAS-I-C,Cas5_0_IC,Cas3_1_CAS-I,WYL_3_CAS-I-II-III-IV-V-VI;Positions=1,2,4,5,6,7,8,9;E-values=3.20e-30,2.80e-109,2.10e-31,4.80e-124,1.90e-107,7.30e-92,1.50e-105,4.80e-14;CoverageSeq=0.929,0.955,0.844,0.969,0.933,0.81,0.895,0.517;CoverageHMM=0.978,0.747,0.983,0.996,0.96,0.995,0.958,0.884;Strand_Interference=-1;Strand_Adaptation=-1
SEQF7091.1|JAJBFN010000006.1	CCTyper	OPERON	95012	103413	8402	+	.	ID=SEQF7091.1|JAJBFN010000006.1@3;Genome_ID=SEQF7091.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_0_II,Cas9_1_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_1_CAS-II-A,Csa5gr11_3_CAS-I-A;Positions=85,86,87,88,89,93;E-values=6.70e-271,1.70e-151,1.70e-103,1.40e-51,1.00e-106,2.10e-04;CoverageSeq=0.983,0.987,0.931,0.965,0.982,0.663;CoverageHMM=0.787,0.411,0.996,0.983,0.995,0.389;Strand_Interference=1;Strand_Adaptation=1
SEQF7091.1|JAJBFN010000011.1	CCTyper	CDS	2210	3004	265	-	.	ID=SEQF7091.1|JAJBFN010000011.1_2_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IC;coding_strand=-;E-value=2.8e-109;Score=362.1;Coverage_Seq=0.9547169811320755;Coverage_Hmm=0.7470588235294118
SEQF7091.1|JAJBFN010000003.1	CCTyper	CDS	262783	263724	314	+	.	ID=SEQF7091.1|JAJBFN010000003.1_268_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IE;coding_strand=+;E-value=1.6e-107;Score=355.5;Coverage_Seq=0.8535031847133758;Coverage_Hmm=0.9925650557620818
SEQF7091.1|JAJBFN010000006.1	CCTyper	CDS	99039	99905	289	+	.	ID=SEQF7091.1|JAJBFN010000006.1_87_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.7e-103;Score=342.4;Coverage_Seq=0.9307958477508651;Coverage_Hmm=0.9963636363636363
SEQF7091.1|JAJBFN010000011.1	CCTyper	CDS	1906	2199	98	-	.	ID=SEQF7091.1|JAJBFN010000011.1_1_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : Cas2_4_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=3.2e-30;Score=101.2;Coverage_Seq=0.9285714285714286;Coverage_Hmm=0.9775280898876404
SEQF7091.1|JAJBFN010000006.1	CCTyper	CDS	99902	100246	115	+	.	ID=SEQF7091.1|JAJBFN010000006.1_88_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.4e-51;Score=170.4;Coverage_Seq=0.9652173913043478;Coverage_Hmm=0.9827586206896551
SEQF7091.1|JAJBFN010000003.1	CCTyper	CDS	255145	257931	929	+	.	ID=SEQF7091.1|JAJBFN010000003.1_262_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : Cas3_0_CAS-I;coding_strand=+;E-value=9.699999999999999e-70;Score=232.2;Coverage_Seq=0.4381054897739505;Coverage_Hmm=0.9830028328611898
SEQF7091.1|JAJBFN010000011.1	CCTyper	CDS	7557	9947	797	-	.	ID=SEQF7091.1|JAJBFN010000011.1_8_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : Cas3_1_CAS-I;coding_strand=-;E-value=1.4999999999999999e-105;Score=350.9;Coverage_Seq=0.8946047678795483;Coverage_Hmm=0.9583892617449664
SEQF7091.1|JAJBFN010000011.1	CCTyper	CDS	3230	3901	224	-	.	ID=SEQF7091.1|JAJBFN010000011.1_4_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : Cas4_0_I-II;coding_strand=-;E-value=2.1e-31;Score=105.9;Coverage_Seq=0.84375;Coverage_Hmm=0.9833333333333333
SEQF7091.1|JAJBFN010000011.1	CCTyper	CDS	6713	7456	248	-	.	ID=SEQF7091.1|JAJBFN010000011.1_7_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : Cas5_0_IC;coding_strand=-;E-value=7.3e-92;Score=303.8;Coverage_Seq=0.8104838709677419;Coverage_Hmm=0.9950738916256158
SEQF7091.1|JAJBFN010000003.1	CCTyper	CDS	261418	262134	239	+	.	ID=SEQF7091.1|JAJBFN010000003.1_266_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : Cas5_0_IE;coding_strand=+;E-value=2.3e-42;Score=142.0;Coverage_Seq=0.8619246861924686;Coverage_Hmm=0.9739130434782609
SEQF7091.1|JAJBFN010000003.1	CCTyper	CDS	262140	262781	214	+	.	ID=SEQF7091.1|JAJBFN010000003.1_267_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : Cas6e_2_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=7.599999999999999e-47;Score=157.0;Coverage_Seq=0.9719626168224299;Coverage_Hmm=0.995049504950495
SEQF7091.1|JAJBFN010000011.1	CCTyper	CDS	3903	4778	292	-	.	ID=SEQF7091.1|JAJBFN010000011.1_5_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : Cas7_0_IC;coding_strand=-;E-value=4.800000000000001e-124;Score=410.1;Coverage_Seq=0.9691780821917808;Coverage_Hmm=0.9964788732394366
SEQF7091.1|JAJBFN010000003.1	CCTyper	CDS	260192	261412	407	+	.	ID=SEQF7091.1|JAJBFN010000003.1_265_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : Cas7_1_CAS-I-E;coding_strand=+;E-value=2.7e-113;Score=375.9;Coverage_Seq=0.9434889434889435;Coverage_Hmm=0.9972144846796658
SEQF7091.1|JAJBFN010000011.1	CCTyper	CDS	4782	6713	644	-	.	ID=SEQF7091.1|JAJBFN010000011.1_6_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : Cas8c_0_CAS-I-C;coding_strand=-;E-value=1.8999999999999998e-107;Score=357.0;Coverage_Seq=0.9332298136645962;Coverage_Hmm=0.9600694444444444
SEQF7091.1|JAJBFN010000003.1	CCTyper	CDS	257924	259606	561	+	.	ID=SEQF7091.1|JAJBFN010000003.1_263_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : Cas8e_4_CAS-I-E;coding_strand=+;E-value=1.9e-91;Score=304.1;Coverage_Seq=0.8877005347593583;Coverage_Hmm=0.9935483870967742
SEQF7091.1|JAJBFN010000006.1	CCTyper	CDS	95012	97639	876	+	.	ID=SEQF7091.1|JAJBFN010000006.1_85_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=+;E-value=6.699999999999999e-271;Score=898.1;Coverage_Seq=0.9828767123287672;Coverage_Hmm=0.7867469879518072
SEQF7091.1|JAJBFN010000006.1	CCTyper	CDS	97636	99039	468	+	.	ID=SEQF7091.1|JAJBFN010000006.1_86_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : Cas9_1_II;coding_strand=+;E-value=1.6999999999999998e-151;Score=503.4;Coverage_Seq=0.9871794871794872;Coverage_Hmm=0.4107142857142857
SEQF7091.1|JAJBFN010000006.1	CCTyper	CDS	103129	103413	95	+	.	ID=SEQF7091.1|JAJBFN010000006.1_93_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : Csa5gr11_3_CAS-I-A;coding_strand=+;E-value=0.00021;Score=18.4;Coverage_Seq=0.6631578947368421;Coverage_Hmm=0.3888888888888889
SEQF7091.1|JAJBFN010000003.1	CCTyper	CDS	259603	260202	200	+	.	ID=SEQF7091.1|JAJBFN010000003.1_264_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : Cse2gr11_5_CAS-I-E;coding_strand=+;E-value=1.2e-67;Score=224.2;Coverage_Seq=0.95;Coverage_Hmm=0.9748743718592965
SEQF7091.1|JAJBFN010000006.1	CCTyper	CDS	100236	100898	221	+	.	ID=SEQF7091.1|JAJBFN010000006.1_89_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : Csn2_1_CAS-II-A;coding_strand=+;E-value=1e-106;Score=352.3;Coverage_Seq=0.9819004524886877;Coverage_Hmm=0.9954128440366973
SEQF7091.1|JAJBFN010000003.1	CCTyper	CDS	263726	264628	301	+	.	ID=SEQF7091.1|JAJBFN010000003.1_269_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : DEDDh_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=4.7999999999999997e-35;Score=117.9;Coverage_Seq=0.5116279069767442;Coverage_Hmm=0.98125
SEQF7091.1|JAJBFN010000003.1	CCTyper	CDS	253972	254955	328	+	.	ID=SEQF7091.1|JAJBFN010000003.1_261_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : WYL_3_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.2e-09;Score=35.3;Coverage_Seq=0.4847560975609756;Coverage_Hmm=0.8895348837209303
SEQF7091.1|JAJBFN010000011.1	CCTyper	CDS	10198	11172	325	-	.	ID=SEQF7091.1|JAJBFN010000011.1_9_cas;Genome_ID=SEQF7091.1;Feature_type=CDS;Product=Cas Prediction : WYL_3_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=4.8e-14;Score=49.6;Coverage_Seq=0.5169230769230769;Coverage_Hmm=0.8837209302325582