SEQF7161.1|JAINRL010000001.1	CCTyper	repeat_region	299998	301155	1158	+	.	ID=SEQF7161.1|JAINRL010000001.1_1;Genome_ID=SEQF7161.1;Note=Predictor:CCtyper;Start:299998;End:301155;Consensus_Repeat:GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC;Number_of_Repeats:18;Repeat_Length:36;Average_Spacer_Length:30;Repeat_Identity:95.1;Spacer_Identity:42.1;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.996;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	direct_repeat	299998	300033	36	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_REPEAT1;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	binding_site	300034	300063	30	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_SPACER1;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=TTCAGCCGTTAGCCTTGAATTCAAGTGGCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	direct_repeat	300064	300099	36	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_REPEAT2;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	binding_site	300100	300129	30	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_SPACER2;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=TTAGGCAGTTAATAAAATTGGCAAATACAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	direct_repeat	300130	300165	36	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_REPEAT3;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	binding_site	300166	300195	30	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_SPACER3;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=GTGCTTTTTCAAAAATATTAACTTCATCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	direct_repeat	300196	300231	36	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_REPEAT4;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	binding_site	300232	300261	30	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_SPACER4;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=TTTCCAACCACTTTTTTGTTTTGTTATTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	direct_repeat	300262	300297	36	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_REPEAT5;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	binding_site	300298	300327	30	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_SPACER5;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=ATCGTAACAAGAATGATTATCTATTTAGAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	direct_repeat	300328	300363	36	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_REPEAT6;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	binding_site	300364	300393	30	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_SPACER6;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=AATTAAGACCCTATCAAACCGATTTAATTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	direct_repeat	300394	300429	36	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_REPEAT7;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	binding_site	300430	300459	30	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_SPACER7;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=TTTACTTCGTCCCATTTTGACCATCTAGAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	direct_repeat	300460	300495	36	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_REPEAT8;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	binding_site	300496	300525	30	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_SPACER8;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=TAGGACTTGCAGGAATTGTTTTTGGAGCTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	direct_repeat	300526	300561	36	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_REPEAT9;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	binding_site	300562	300591	30	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_SPACER9;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=CAGCATTTCAGAAGATTAAGCAGCAATTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	direct_repeat	300592	300627	36	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_REPEAT10;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	binding_site	300628	300657	30	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_SPACER10;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=AAATGGCTTGCTAATGAAAAAAAGCACGTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	direct_repeat	300658	300693	36	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_REPEAT11;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	binding_site	300694	300723	30	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_SPACER11;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=AGTAGTAATTTGAACTTCGCCTAAGTAGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	direct_repeat	300724	300759	36	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_REPEAT12;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	binding_site	300760	300789	30	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_SPACER12;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=AAATGGACAAAATTGATTTAAGTTTACCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	direct_repeat	300790	300825	36	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_REPEAT13;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	binding_site	300826	300855	30	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_SPACER13;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=AAAGCCAAAGTTCTAACAAACAAAAATCTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	direct_repeat	300856	300891	36	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_REPEAT14;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	binding_site	300892	300921	30	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_SPACER14;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=GTTGGGCACAAATTATGGAAGCTCAAAGCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	direct_repeat	300922	300957	36	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_REPEAT15;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	binding_site	300958	300987	30	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_SPACER15;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=CAACGTTGGTTTGGATAAAGCTTACAACAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	direct_repeat	300988	301023	36	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_REPEAT16;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	binding_site	301024	301053	30	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_SPACER16;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=CTTCCTCATCTTTCTTAATTACATAGTTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	direct_repeat	301054	301089	36	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_REPEAT17;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	binding_site	301090	301119	30	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_SPACER17;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=ATTCATTGCTTGCCTCAGATGAAGTGTTCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	direct_repeat	301120	301155	36	+	.	ID=SEQF7161.1|JAINRL010000001.1_1_REPEAT18;Parent=SEQF7161.1|JAINRL010000001.1_1;Note=GTTTTAGATGGTTGTTAGATCAATAAAGATTGCAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7161.1|JAINRL010000001.1	CCTyper	OPERON	293774	299964	6191	+	.	ID=SEQF7161.1|JAINRL010000001.1@7;Genome_ID=SEQF7161.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_0_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_9_CAS-I-II-III-IV-V-VI,Csn2_3_CAS-II-A;Positions=307,308,309,310;E-values=9.60e-172,4.40e-88,2.10e-55,1.60e-67;CoverageSeq=0.929,0.884,0.981,0.982;CoverageHMM=0.998,0.993,1.0,0.995;Strand_Interference=1;Strand_Adaptation=1
SEQF7161.1|JAINRL010000001.1	CCTyper	CDS	298108	299016	303	+	.	ID=SEQF7161.1|JAINRL010000001.1_308_cas;Genome_ID=SEQF7161.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=4.4e-88;Score=291.7;Coverage_Seq=0.8844884488448845;Coverage_Hmm=0.9927272727272727
SEQF7161.1|JAINRL010000001.1	CCTyper	CDS	298991	299299	103	+	.	ID=SEQF7161.1|JAINRL010000001.1_309_cas;Genome_ID=SEQF7161.1;Feature_type=CDS;Product=Cas Prediction : Cas2_9_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=2.0999999999999998e-55;Score=181.9;Coverage_Seq=0.9805825242718447;Coverage_Hmm=1.0
SEQF7161.1|JAINRL010000001.1	CCTyper	CDS	293774	297901	1376	+	.	ID=SEQF7161.1|JAINRL010000001.1_307_cas;Genome_ID=SEQF7161.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=+;E-value=9.6e-172;Score=570.0;Coverage_Seq=0.9287790697674418;Coverage_Hmm=0.9975903614457832
SEQF7161.1|JAINRL010000001.1	CCTyper	CDS	299296	299964	223	+	.	ID=SEQF7161.1|JAINRL010000001.1_310_cas;Genome_ID=SEQF7161.1;Feature_type=CDS;Product=Cas Prediction : Csn2_3_CAS-II-A;coding_strand=+;E-value=1.6e-67;Score=224.1;Coverage_Seq=0.9820627802690582;Coverage_Hmm=0.9954337899543378