SEQF7312.1|CP013939.1	CCTyper	repeat_region	304100	305059	960	+	.	ID=SEQF7312.1|CP013939.1_1;Genome_ID=SEQF7312.1;Note=Predictor:CCtyper;Start:304100;End:305059;Consensus_Repeat:GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Number_of_Repeats:15;Repeat_Length:36;Average_Spacer_Length:30;Repeat_Identity:97.9;Spacer_Identity:43.2;Spacer_Length_Sem:0.1;Trusted:True;Cas_Type_Prediction: II-C;Cas_Subtype_Prediction:II-C;Subtype_Probability:0.946;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	direct_repeat	304100	304135	36	+	.	ID=SEQF7312.1|CP013939.1_1_REPEAT1;Parent=SEQF7312.1|CP013939.1_1;Note=ACTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	binding_site	304136	304164	29	+	.	ID=SEQF7312.1|CP013939.1_1_SPACER1;Parent=SEQF7312.1|CP013939.1_1;Note=TGCCCACGTCCGACCGAAACAATGGCACG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	direct_repeat	304165	304200	36	+	.	ID=SEQF7312.1|CP013939.1_1_REPEAT2;Parent=SEQF7312.1|CP013939.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	binding_site	304201	304230	30	+	.	ID=SEQF7312.1|CP013939.1_1_SPACER2;Parent=SEQF7312.1|CP013939.1_1;Note=AAACTCGATAAAATCATGAATGTAATTCAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	direct_repeat	304231	304266	36	+	.	ID=SEQF7312.1|CP013939.1_1_REPEAT3;Parent=SEQF7312.1|CP013939.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	binding_site	304267	304296	30	+	.	ID=SEQF7312.1|CP013939.1_1_SPACER3;Parent=SEQF7312.1|CP013939.1_1;Note=CCGTTTTGGAATCAGTAGAGCGACATATTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	direct_repeat	304297	304332	36	+	.	ID=SEQF7312.1|CP013939.1_1_REPEAT4;Parent=SEQF7312.1|CP013939.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	binding_site	304333	304363	31	+	.	ID=SEQF7312.1|CP013939.1_1_SPACER4;Parent=SEQF7312.1|CP013939.1_1;Note=TCGGTGATCAAGATGTTGACCATATTGAAGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	direct_repeat	304364	304399	36	+	.	ID=SEQF7312.1|CP013939.1_1_REPEAT5;Parent=SEQF7312.1|CP013939.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	binding_site	304400	304429	30	+	.	ID=SEQF7312.1|CP013939.1_1_SPACER5;Parent=SEQF7312.1|CP013939.1_1;Note=AATGTTAAAGAGATTGCAGTATCAATTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	direct_repeat	304430	304465	36	+	.	ID=SEQF7312.1|CP013939.1_1_REPEAT6;Parent=SEQF7312.1|CP013939.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	binding_site	304466	304495	30	+	.	ID=SEQF7312.1|CP013939.1_1_SPACER6;Parent=SEQF7312.1|CP013939.1_1;Note=ACTTCCAAGCGCTTCAAAACAAGGTTTCAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	direct_repeat	304496	304531	36	+	.	ID=SEQF7312.1|CP013939.1_1_REPEAT7;Parent=SEQF7312.1|CP013939.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	binding_site	304532	304561	30	+	.	ID=SEQF7312.1|CP013939.1_1_SPACER7;Parent=SEQF7312.1|CP013939.1_1;Note=AGGTTGAAAAGTGTAGAAATTCGTGAAATA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	direct_repeat	304562	304597	36	+	.	ID=SEQF7312.1|CP013939.1_1_REPEAT8;Parent=SEQF7312.1|CP013939.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	binding_site	304598	304626	29	+	.	ID=SEQF7312.1|CP013939.1_1_SPACER8;Parent=SEQF7312.1|CP013939.1_1;Note=TACTTACAAGTTTTCCCCATGTATGAGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	direct_repeat	304627	304662	36	+	.	ID=SEQF7312.1|CP013939.1_1_REPEAT9;Parent=SEQF7312.1|CP013939.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	binding_site	304663	304692	30	+	.	ID=SEQF7312.1|CP013939.1_1_SPACER9;Parent=SEQF7312.1|CP013939.1_1;Note=GGTTACCAATAAATCCATCAGACACTCTCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	direct_repeat	304693	304728	36	+	.	ID=SEQF7312.1|CP013939.1_1_REPEAT10;Parent=SEQF7312.1|CP013939.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	binding_site	304729	304759	31	+	.	ID=SEQF7312.1|CP013939.1_1_SPACER10;Parent=SEQF7312.1|CP013939.1_1;Note=GAAGAATTAAATGAACTGATAGAGAGTATGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	direct_repeat	304760	304795	36	+	.	ID=SEQF7312.1|CP013939.1_1_REPEAT11;Parent=SEQF7312.1|CP013939.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	binding_site	304796	304825	30	+	.	ID=SEQF7312.1|CP013939.1_1_SPACER11;Parent=SEQF7312.1|CP013939.1_1;Note=GGAATGACCACCCAAACCTCATTAATACTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	direct_repeat	304826	304861	36	+	.	ID=SEQF7312.1|CP013939.1_1_REPEAT12;Parent=SEQF7312.1|CP013939.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	binding_site	304862	304891	30	+	.	ID=SEQF7312.1|CP013939.1_1_SPACER12;Parent=SEQF7312.1|CP013939.1_1;Note=TCAAGTAGCTCTTTTAGTTTTAAAGTTGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	direct_repeat	304892	304927	36	+	.	ID=SEQF7312.1|CP013939.1_1_REPEAT13;Parent=SEQF7312.1|CP013939.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	binding_site	304928	304957	30	+	.	ID=SEQF7312.1|CP013939.1_1_SPACER13;Parent=SEQF7312.1|CP013939.1_1;Note=AGAGTTCCTCATCGTTAACCATAGTAGCGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	direct_repeat	304958	304993	36	+	.	ID=SEQF7312.1|CP013939.1_1_REPEAT14;Parent=SEQF7312.1|CP013939.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	binding_site	304994	305023	30	+	.	ID=SEQF7312.1|CP013939.1_1_SPACER14;Parent=SEQF7312.1|CP013939.1_1;Note=CAAAACTTGAATTTAATTCAACTTAGAAAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	direct_repeat	305024	305059	36	+	.	ID=SEQF7312.1|CP013939.1_1_REPEAT15;Parent=SEQF7312.1|CP013939.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7312.1|CP013939.1	CCTyper	OPERON	305123	310972	5850	-	.	ID=SEQF7312.1|CP013939.1@6;Genome_ID=SEQF7312.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-C;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-C;Best_score=9.0;Genes=Csn2_0_CAS-II-C,Cas2_5_CAS-I-II-III-IV-V-VI,Cas1_4_CAS-I-II-III-IV-V-VI,Cas9_0_II;Positions=338,339,340,341;E-values=1.40e-141,2.70e-32,2.60e-103,1.60e-194;CoverageSeq=0.991,0.954,0.908,0.693;CoverageHMM=1.0,0.888,0.996,0.976;Strand_Interference=-1;Strand_Adaptation=-1
SEQF7312.1|CP013939.1	CCTyper	OPERON	63089	72102	9014	-	.	ID=SEQF7312.1|CP013939.1@2;Genome_ID=SEQF7312.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=18.0;Genes=Csm6_1_CAS-III,Csm5gr7_0_CAS-III-A-III-D,Csm4_0_IIIA,Csm3gr7_1_CAS-III-A-III-D,Csm2gr11_7_CAS-III-A,Cas10_1_CAS-III,Cas6_0_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,Cas1_0_CAS-I-II-III-IV-V-VI,Cas1_0_CAS-I-II-III-IV-V-VI;Positions=71,72,73,74,75,76,77,78,79,80;E-values=3.80e-178,6.40e-34,8.60e-39,4.60e-74,2.10e-22,5.60e-197,1.10e-31,6.00e-23,4.80e-24,1.90e-50;CoverageSeq=0.874,0.743,0.943,0.919,0.921,0.829,0.783,0.636,0.848,0.976;CoverageHMM=1.0,0.734,0.967,0.981,0.982,0.997,0.912,0.873,0.35,0.637;Strand_Interference=-1;Strand_Adaptation=NA
SEQF7312.1|CP013939.1	CCTyper	CDS	67443	69719	759	-	.	ID=SEQF7312.1|CP013939.1_76_cas;Genome_ID=SEQF7312.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=-;E-value=5.6e-197;Score=653.0;Coverage_Seq=0.8287220026350461;Coverage_Hmm=0.9969418960244648
SEQF7312.1|CP013939.1	CCTyper	CDS	71099	71494	132	-	.	ID=SEQF7312.1|CP013939.1_79_cas;Genome_ID=SEQF7312.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=4.8e-24;Score=81.8;Coverage_Seq=0.8484848484848485;Coverage_Hmm=0.3501577287066246
SEQF7312.1|CP013939.1	CCTyper	CDS	71479	72102	208	-	.	ID=SEQF7312.1|CP013939.1_80_cas;Genome_ID=SEQF7312.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.9e-50;Score=168.5;Coverage_Seq=0.9759615384615384;Coverage_Hmm=0.637223974763407
SEQF7312.1|CP013939.1	CCTyper	CDS	306497	307408	304	-	.	ID=SEQF7312.1|CP013939.1_340_cas;Genome_ID=SEQF7312.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=2.6e-103;Score=341.8;Coverage_Seq=0.9078947368421053;Coverage_Hmm=0.9963636363636363
SEQF7312.1|CP013939.1	CCTyper	CDS	70770	71099	110	-	.	ID=SEQF7312.1|CP013939.1_78_cas;Genome_ID=SEQF7312.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=6e-23;Score=77.7;Coverage_Seq=0.6363636363636364;Coverage_Hmm=0.8734177215189873
SEQF7312.1|CP013939.1	CCTyper	CDS	306172	306495	108	-	.	ID=SEQF7312.1|CP013939.1_339_cas;Genome_ID=SEQF7312.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=2.7000000000000004e-32;Score=108.2;Coverage_Seq=0.9537037037037037;Coverage_Hmm=0.8879310344827587
SEQF7312.1|CP013939.1	CCTyper	CDS	69700	70431	244	-	.	ID=SEQF7312.1|CP013939.1_77_cas;Genome_ID=SEQF7312.1;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.1e-31;Score=107.6;Coverage_Seq=0.7827868852459017;Coverage_Hmm=0.9123711340206185
SEQF7312.1|CP013939.1	CCTyper	CDS	307586	310972	1129	-	.	ID=SEQF7312.1|CP013939.1_341_cas;Genome_ID=SEQF7312.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=-;E-value=1.6e-194;Score=645.4;Coverage_Seq=0.6926483613817538;Coverage_Hmm=0.9759036144578314
SEQF7312.1|CP013939.1	CCTyper	CDS	67059	67439	127	-	.	ID=SEQF7312.1|CP013939.1_75_cas;Genome_ID=SEQF7312.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=-;E-value=2.1e-22;Score=77.0;Coverage_Seq=0.9212598425196851;Coverage_Hmm=0.9818181818181818
SEQF7312.1|CP013939.1	CCTyper	CDS	66397	67059	221	-	.	ID=SEQF7312.1|CP013939.1_74_cas;Genome_ID=SEQF7312.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=-;E-value=4.6000000000000004e-74;Score=245.6;Coverage_Seq=0.918552036199095;Coverage_Hmm=0.9813953488372092
SEQF7312.1|CP013939.1	CCTyper	CDS	65496	66395	300	-	.	ID=SEQF7312.1|CP013939.1_73_cas;Genome_ID=SEQF7312.1;Feature_type=CDS;Product=Cas Prediction : Csm4_0_IIIA;coding_strand=-;E-value=8.6e-39;Score=130.3;Coverage_Seq=0.9433333333333334;Coverage_Hmm=0.9668874172185431
SEQF7312.1|CP013939.1	CCTyper	CDS	64420	65493	358	-	.	ID=SEQF7312.1|CP013939.1_72_cas;Genome_ID=SEQF7312.1;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=-;E-value=6.4e-34;Score=114.5;Coverage_Seq=0.7430167597765364;Coverage_Hmm=0.7342465753424657
SEQF7312.1|CP013939.1	CCTyper	CDS	63089	64423	445	-	.	ID=SEQF7312.1|CP013939.1_71_cas;Genome_ID=SEQF7312.1;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=-;E-value=3.8e-178;Score=588.6;Coverage_Seq=0.8741573033707866;Coverage_Hmm=1.0
SEQF7312.1|CP013939.1	CCTyper	CDS	305123	306175	351	-	.	ID=SEQF7312.1|CP013939.1_338_cas;Genome_ID=SEQF7312.1;Feature_type=CDS;Product=Cas Prediction : Csn2_0_CAS-II-C;coding_strand=-;E-value=1.4e-141;Score=468.2;Coverage_Seq=0.9914529914529915;Coverage_Hmm=1.0