SEQF7341.1|CP040412.1	CCTyper	repeat_region	662828	663853	1026	+	.	ID=SEQF7341.1|CP040412.1_1;Genome_ID=SEQF7341.1;Note=Predictor:CCtyper;Start:662828;End:663853;Consensus_Repeat:GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC;Number_of_Repeats:16;Repeat_Length:36;Average_Spacer_Length:30;Repeat_Identity:98.9;Spacer_Identity:41.6;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.897;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	direct_repeat	662828	662863	36	+	.	ID=SEQF7341.1|CP040412.1_1_REPEAT1;Parent=SEQF7341.1|CP040412.1_1;Note=GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	binding_site	662864	662893	30	+	.	ID=SEQF7341.1|CP040412.1_1_SPACER1;Parent=SEQF7341.1|CP040412.1_1;Note=TGATTAGCTTACTTATTGTTAGGTTGAGAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	direct_repeat	662894	662929	36	+	.	ID=SEQF7341.1|CP040412.1_1_REPEAT2;Parent=SEQF7341.1|CP040412.1_1;Note=GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	binding_site	662930	662959	30	+	.	ID=SEQF7341.1|CP040412.1_1_SPACER2;Parent=SEQF7341.1|CP040412.1_1;Note=ACAGCGGAGCTTGAGAAGTATCTGAATGGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	direct_repeat	662960	662995	36	+	.	ID=SEQF7341.1|CP040412.1_1_REPEAT3;Parent=SEQF7341.1|CP040412.1_1;Note=GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	binding_site	662996	663025	30	+	.	ID=SEQF7341.1|CP040412.1_1_SPACER3;Parent=SEQF7341.1|CP040412.1_1;Note=GTGAGCAGAAGCGATTTGACTTATCGCTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	direct_repeat	663026	663061	36	+	.	ID=SEQF7341.1|CP040412.1_1_REPEAT4;Parent=SEQF7341.1|CP040412.1_1;Note=GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	binding_site	663062	663091	30	+	.	ID=SEQF7341.1|CP040412.1_1_SPACER4;Parent=SEQF7341.1|CP040412.1_1;Note=AATTGACGTTGGTGTGATGAGTGGCTTAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	direct_repeat	663092	663127	36	+	.	ID=SEQF7341.1|CP040412.1_1_REPEAT5;Parent=SEQF7341.1|CP040412.1_1;Note=GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	binding_site	663128	663157	30	+	.	ID=SEQF7341.1|CP040412.1_1_SPACER5;Parent=SEQF7341.1|CP040412.1_1;Note=GAATATATTAAAACATCAGGACAGGGGTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	direct_repeat	663158	663193	36	+	.	ID=SEQF7341.1|CP040412.1_1_REPEAT6;Parent=SEQF7341.1|CP040412.1_1;Note=GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	binding_site	663194	663223	30	+	.	ID=SEQF7341.1|CP040412.1_1_SPACER6;Parent=SEQF7341.1|CP040412.1_1;Note=GTCAGACCTCGTCAAGCCATCCATAGCTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	direct_repeat	663224	663259	36	+	.	ID=SEQF7341.1|CP040412.1_1_REPEAT7;Parent=SEQF7341.1|CP040412.1_1;Note=GTTTTAGAGCTGTGTTGTTTTGAATGACTTCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	binding_site	663260	663289	30	+	.	ID=SEQF7341.1|CP040412.1_1_SPACER7;Parent=SEQF7341.1|CP040412.1_1;Note=GTTGACAACTAAATTTAGATCTGATATACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	direct_repeat	663290	663325	36	+	.	ID=SEQF7341.1|CP040412.1_1_REPEAT8;Parent=SEQF7341.1|CP040412.1_1;Note=GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	binding_site	663326	663355	30	+	.	ID=SEQF7341.1|CP040412.1_1_SPACER8;Parent=SEQF7341.1|CP040412.1_1;Note=TTTTATTCTTCGAATTAGTCATGCTATAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	direct_repeat	663356	663391	36	+	.	ID=SEQF7341.1|CP040412.1_1_REPEAT9;Parent=SEQF7341.1|CP040412.1_1;Note=GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	binding_site	663392	663421	30	+	.	ID=SEQF7341.1|CP040412.1_1_SPACER9;Parent=SEQF7341.1|CP040412.1_1;Note=TGATCGCCTGCTTTTGTTATCGTCTTCATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	direct_repeat	663422	663457	36	+	.	ID=SEQF7341.1|CP040412.1_1_REPEAT10;Parent=SEQF7341.1|CP040412.1_1;Note=GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	binding_site	663458	663487	30	+	.	ID=SEQF7341.1|CP040412.1_1_SPACER10;Parent=SEQF7341.1|CP040412.1_1;Note=AAAAACTAGTTGACAACTTATGATTATAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	direct_repeat	663488	663523	36	+	.	ID=SEQF7341.1|CP040412.1_1_REPEAT11;Parent=SEQF7341.1|CP040412.1_1;Note=GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	binding_site	663524	663553	30	+	.	ID=SEQF7341.1|CP040412.1_1_SPACER11;Parent=SEQF7341.1|CP040412.1_1;Note=TTTCTTGTCAAGTACTTTTCTAAAATTTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	direct_repeat	663554	663589	36	+	.	ID=SEQF7341.1|CP040412.1_1_REPEAT12;Parent=SEQF7341.1|CP040412.1_1;Note=GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	binding_site	663590	663619	30	+	.	ID=SEQF7341.1|CP040412.1_1_SPACER12;Parent=SEQF7341.1|CP040412.1_1;Note=TATTCGTGTTGTGTATTGTTGAGTTGTTGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	direct_repeat	663620	663655	36	+	.	ID=SEQF7341.1|CP040412.1_1_REPEAT13;Parent=SEQF7341.1|CP040412.1_1;Note=GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	binding_site	663656	663685	30	+	.	ID=SEQF7341.1|CP040412.1_1_SPACER13;Parent=SEQF7341.1|CP040412.1_1;Note=GCTAATATTGTGCTACCAAAGGCGGTGGCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	direct_repeat	663686	663721	36	+	.	ID=SEQF7341.1|CP040412.1_1_REPEAT14;Parent=SEQF7341.1|CP040412.1_1;Note=GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	binding_site	663722	663751	30	+	.	ID=SEQF7341.1|CP040412.1_1_SPACER14;Parent=SEQF7341.1|CP040412.1_1;Note=AATCGTTAAAGAAGTACAGCGCGGTATTCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	direct_repeat	663752	663787	36	+	.	ID=SEQF7341.1|CP040412.1_1_REPEAT15;Parent=SEQF7341.1|CP040412.1_1;Note=GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	binding_site	663788	663817	30	+	.	ID=SEQF7341.1|CP040412.1_1_SPACER15;Parent=SEQF7341.1|CP040412.1_1;Note=TCGCCTAATGCTTCATTAAAGCCGTCAATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	direct_repeat	663818	663853	36	+	.	ID=SEQF7341.1|CP040412.1_1_REPEAT16;Parent=SEQF7341.1|CP040412.1_1;Note=GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	repeat_region	665751	666050	300	+	.	ID=SEQF7341.1|CP040412.1_2;Genome_ID=SEQF7341.1;Note=Predictor:CCtyper;Start:665751;End:666050;Consensus_Repeat:GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC;Number_of_Repeats:5;Repeat_Length:36;Average_Spacer_Length:30;Repeat_Identity:92.0;Spacer_Identity:46.5;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.897;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	direct_repeat	665751	665786	36	+	.	ID=SEQF7341.1|CP040412.1_2_REPEAT1;Parent=SEQF7341.1|CP040412.1_2;Note=GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	binding_site	665787	665816	30	+	.	ID=SEQF7341.1|CP040412.1_2_SPACER1;Parent=SEQF7341.1|CP040412.1_2;Note=GAAATTAGCCAGCTCGTCCACAGAGTAGCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	direct_repeat	665817	665852	36	+	.	ID=SEQF7341.1|CP040412.1_2_REPEAT2;Parent=SEQF7341.1|CP040412.1_2;Note=GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	binding_site	665853	665882	30	+	.	ID=SEQF7341.1|CP040412.1_2_SPACER2;Parent=SEQF7341.1|CP040412.1_2;Note=TCTAGACGGGAATAAAGTGGTGGCTACATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	direct_repeat	665883	665918	36	+	.	ID=SEQF7341.1|CP040412.1_2_REPEAT3;Parent=SEQF7341.1|CP040412.1_2;Note=GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	binding_site	665919	665948	30	+	.	ID=SEQF7341.1|CP040412.1_2_SPACER3;Parent=SEQF7341.1|CP040412.1_2;Note=TGAAGGATAAAGGTTACGCAAGAATATCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	direct_repeat	665949	665984	36	+	.	ID=SEQF7341.1|CP040412.1_2_REPEAT4;Parent=SEQF7341.1|CP040412.1_2;Note=GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	binding_site	665985	666014	30	+	.	ID=SEQF7341.1|CP040412.1_2_SPACER4;Parent=SEQF7341.1|CP040412.1_2;Note=TCGTTAGATGAGTTGAGTAAGTCCATCACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	direct_repeat	666015	666050	36	+	.	ID=SEQF7341.1|CP040412.1_2_REPEAT5;Parent=SEQF7341.1|CP040412.1_2;Note=GTTTTAGAGCTGTGTTGTTTTGAATAACCCTAAATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7341.1|CP040412.1	CCTyper	OPERON	656830	662699	5870	+	.	ID=SEQF7341.1|CP040412.1@19;Genome_ID=SEQF7341.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_1_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_1_CAS-II-A;Positions=620,621,622,623;E-values=2.50e-300,5.70e-97,2.60e-40,1.10e-95;CoverageSeq=0.998,0.934,0.953,0.96;CoverageHMM=0.999,1.0,0.888,0.991;Strand_Interference=1;Strand_Adaptation=1
SEQF7341.1|CP040412.1	CCTyper	CDS	660828	661697	290	+	.	ID=SEQF7341.1|CP040412.1_621_cas;Genome_ID=SEQF7341.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=5.7e-97;Score=320.8;Coverage_Seq=0.9344827586206896;Coverage_Hmm=1.0
SEQF7341.1|CP040412.1	CCTyper	CDS	661724	662041	106	+	.	ID=SEQF7341.1|CP040412.1_622_cas;Genome_ID=SEQF7341.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=2.6e-40;Score=133.9;Coverage_Seq=0.9528301886792453;Coverage_Hmm=0.8879310344827587
SEQF7341.1|CP040412.1	CCTyper	CDS	656830	660828	1333	+	.	ID=SEQF7341.1|CP040412.1_620_cas;Genome_ID=SEQF7341.1;Feature_type=CDS;Product=Cas Prediction : Cas9_1_II;coding_strand=+;E-value=2.5e-300;Score=996.1;Coverage_Seq=0.9977494373593399;Coverage_Hmm=0.9991071428571429
SEQF7341.1|CP040412.1	CCTyper	CDS	662022	662699	226	+	.	ID=SEQF7341.1|CP040412.1_623_cas;Genome_ID=SEQF7341.1;Feature_type=CDS;Product=Cas Prediction : Csn2_1_CAS-II-A;coding_strand=+;E-value=1.1e-95;Score=316.1;Coverage_Seq=0.9601769911504425;Coverage_Hmm=0.9908256880733946