SEQF7348.1|CP040417.1	CCTyper	repeat_region	103628	104266	639	+	.	ID=SEQF7348.1|CP040417.1_1;Genome_ID=SEQF7348.1;Note=Predictor:CCtyper;Start:103628;End:104266;Consensus_Repeat:GTCTTTCCCGCACACGCGGGGGTGATCC;Number_of_Repeats:11;Repeat_Length:28;Average_Spacer_Length:33.1;Repeat_Identity:95.0;Spacer_Identity:42.7;Spacer_Length_Sem:0.1;Trusted:True;Cas_Type_Prediction: I-E;Cas_Subtype_Prediction:I-E;Subtype_Probability:0.996;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	direct_repeat	103628	103655	28	+	.	ID=SEQF7348.1|CP040417.1_1_REPEAT1;Parent=SEQF7348.1|CP040417.1_1;Note=GTCTTTCCCGCACACGCGGGGGTGATCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	binding_site	103656	103688	33	+	.	ID=SEQF7348.1|CP040417.1_1_SPACER1;Parent=SEQF7348.1|CP040417.1_1;Note=CGATTAATTAAGACGGAAGAACGTCGGATTATA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	direct_repeat	103689	103716	28	+	.	ID=SEQF7348.1|CP040417.1_1_REPEAT2;Parent=SEQF7348.1|CP040417.1_1;Note=GTCTTTCCCGCACACGCGGGGGTGATCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	binding_site	103717	103749	33	+	.	ID=SEQF7348.1|CP040417.1_1_SPACER2;Parent=SEQF7348.1|CP040417.1_1;Note=CCAATGCAGCCATTTCAGCCATTATCTCTAACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	direct_repeat	103750	103777	28	+	.	ID=SEQF7348.1|CP040417.1_1_REPEAT3;Parent=SEQF7348.1|CP040417.1_1;Note=GTCTTTCCCGCACACGCGGGGGTGATCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	binding_site	103778	103810	33	+	.	ID=SEQF7348.1|CP040417.1_1_SPACER3;Parent=SEQF7348.1|CP040417.1_1;Note=TCACGTGATTGATGCTAGTCGGTATGCACTACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	direct_repeat	103811	103838	28	+	.	ID=SEQF7348.1|CP040417.1_1_REPEAT4;Parent=SEQF7348.1|CP040417.1_1;Note=GTCTTTCCCGCACACGCGGGGGTGATCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	binding_site	103839	103871	33	+	.	ID=SEQF7348.1|CP040417.1_1_SPACER4;Parent=SEQF7348.1|CP040417.1_1;Note=CAGCTTCTTCGACTAGGCCTTGTGCCCAGTCTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	direct_repeat	103872	103899	28	+	.	ID=SEQF7348.1|CP040417.1_1_REPEAT5;Parent=SEQF7348.1|CP040417.1_1;Note=GTCTTTCCCGCACACGCGGGGGTGATCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	binding_site	103900	103932	33	+	.	ID=SEQF7348.1|CP040417.1_1_SPACER5;Parent=SEQF7348.1|CP040417.1_1;Note=TGCTATAATTCTCGGGTTAATTGGGTTCTTAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	direct_repeat	103933	103960	28	+	.	ID=SEQF7348.1|CP040417.1_1_REPEAT6;Parent=SEQF7348.1|CP040417.1_1;Note=GTCTTTCCCGCACACGCGGGGGTGATCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	binding_site	103961	103993	33	+	.	ID=SEQF7348.1|CP040417.1_1_SPACER6;Parent=SEQF7348.1|CP040417.1_1;Note=CAAGAAATGATGACATCAGCACACCAAATCGCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	direct_repeat	103994	104021	28	+	.	ID=SEQF7348.1|CP040417.1_1_REPEAT7;Parent=SEQF7348.1|CP040417.1_1;Note=GTCTTTCCCGCACACGCGGGGGTGATCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	binding_site	104022	104055	34	+	.	ID=SEQF7348.1|CP040417.1_1_SPACER7;Parent=SEQF7348.1|CP040417.1_1;Note=CCGGGCTGTAGCCTGTGTCACGTTTACTTGATGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	direct_repeat	104056	104083	28	+	.	ID=SEQF7348.1|CP040417.1_1_REPEAT8;Parent=SEQF7348.1|CP040417.1_1;Note=GTCTTTCCCGCACACGCGGGGGTGATCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	binding_site	104084	104116	33	+	.	ID=SEQF7348.1|CP040417.1_1_SPACER8;Parent=SEQF7348.1|CP040417.1_1;Note=TGATGATCATATGCGACTTGTATCGTTGAATAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	direct_repeat	104117	104144	28	+	.	ID=SEQF7348.1|CP040417.1_1_REPEAT9;Parent=SEQF7348.1|CP040417.1_1;Note=GTCTTTCCCGCACACGCGGGGGTGATCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	binding_site	104145	104177	33	+	.	ID=SEQF7348.1|CP040417.1_1_SPACER9;Parent=SEQF7348.1|CP040417.1_1;Note=TGCAACGGGGGTGATTGATCCGATTACGGGTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	direct_repeat	104178	104205	28	+	.	ID=SEQF7348.1|CP040417.1_1_REPEAT10;Parent=SEQF7348.1|CP040417.1_1;Note=GTCTTTCCCGCACACGCGGGGGTGATCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	binding_site	104206	104238	33	+	.	ID=SEQF7348.1|CP040417.1_1_SPACER10;Parent=SEQF7348.1|CP040417.1_1;Note=TAGACGAATTCCAGTCCAGCGCTCCACTGTGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	direct_repeat	104239	104266	28	+	.	ID=SEQF7348.1|CP040417.1_1_REPEAT11;Parent=SEQF7348.1|CP040417.1_1;Note=GTCTTTCCCGCACACGCGGGAGTAAACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	repeat_region	1804659	1805090	432	+	.	ID=SEQF7348.1|CP040417.1_2;Genome_ID=SEQF7348.1;Note=Predictor:CCtyper;Start:1804659;End:1805090;Consensus_Repeat:GTTTTTGTACTCTCAATAATTTCCTATCACTAAAAC;Number_of_Repeats:7;Repeat_Length:36;Average_Spacer_Length:30.0;Repeat_Identity:100.0;Spacer_Identity:39.2;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.812;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	direct_repeat	1804659	1804694	36	+	.	ID=SEQF7348.1|CP040417.1_2_REPEAT1;Parent=SEQF7348.1|CP040417.1_2;Note=GTTTTTGTACTCTCAATAATTTCCTATCACTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	binding_site	1804695	1804724	30	+	.	ID=SEQF7348.1|CP040417.1_2_SPACER1;Parent=SEQF7348.1|CP040417.1_2;Note=AAGGTAAACAAACAATATTTTAATCAAGTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	direct_repeat	1804725	1804760	36	+	.	ID=SEQF7348.1|CP040417.1_2_REPEAT2;Parent=SEQF7348.1|CP040417.1_2;Note=GTTTTTGTACTCTCAATAATTTCCTATCACTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	binding_site	1804761	1804790	30	+	.	ID=SEQF7348.1|CP040417.1_2_SPACER2;Parent=SEQF7348.1|CP040417.1_2;Note=TTTAATTCTCGGATAAATTCTTCCATTCGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	direct_repeat	1804791	1804826	36	+	.	ID=SEQF7348.1|CP040417.1_2_REPEAT3;Parent=SEQF7348.1|CP040417.1_2;Note=GTTTTTGTACTCTCAATAATTTCCTATCACTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	binding_site	1804827	1804856	30	+	.	ID=SEQF7348.1|CP040417.1_2_SPACER3;Parent=SEQF7348.1|CP040417.1_2;Note=ATTATTCTAGATGAATAAGAAAGAATTAGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	direct_repeat	1804857	1804892	36	+	.	ID=SEQF7348.1|CP040417.1_2_REPEAT4;Parent=SEQF7348.1|CP040417.1_2;Note=GTTTTTGTACTCTCAATAATTTCCTATCACTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	binding_site	1804893	1804922	30	+	.	ID=SEQF7348.1|CP040417.1_2_SPACER4;Parent=SEQF7348.1|CP040417.1_2;Note=TTAGCCCTGAGCGAACTTGCGTGCCAAACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	direct_repeat	1804923	1804958	36	+	.	ID=SEQF7348.1|CP040417.1_2_REPEAT5;Parent=SEQF7348.1|CP040417.1_2;Note=GTTTTTGTACTCTCAATAATTTCCTATCACTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	binding_site	1804959	1804988	30	+	.	ID=SEQF7348.1|CP040417.1_2_SPACER5;Parent=SEQF7348.1|CP040417.1_2;Note=TCATTATCCCACTCCCTTATCTTTTTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	direct_repeat	1804989	1805024	36	+	.	ID=SEQF7348.1|CP040417.1_2_REPEAT6;Parent=SEQF7348.1|CP040417.1_2;Note=GTTTTTGTACTCTCAATAATTTCCTATCACTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	binding_site	1805025	1805054	30	+	.	ID=SEQF7348.1|CP040417.1_2_SPACER6;Parent=SEQF7348.1|CP040417.1_2;Note=TACCTCTCGAAGCTGTGACAAGTTGGTTTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	direct_repeat	1805055	1805090	36	+	.	ID=SEQF7348.1|CP040417.1_2_REPEAT7;Parent=SEQF7348.1|CP040417.1_2;Note=GTTTTTGTACTCTCAATAATTTCCTATCACTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7348.1|CP040417.1	CCTyper	OPERON	1798687	1804622	5936	+	.	ID=SEQF7348.1|CP040417.1@45;Genome_ID=SEQF7348.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_0_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_2_CAS-II-A;Positions=1690,1692,1693,1694;E-values=1.40e-131,3.20e-90,1.70e-32,4.10e-43;CoverageSeq=0.977,0.905,0.935,0.991;CoverageHMM=0.951,1.0,0.871,0.997;Strand_Interference=1;Strand_Adaptation=1
SEQF7348.1|CP040417.1	CCTyper	OPERON	94119	103604	9486	+	.	ID=SEQF7348.1|CP040417.1@2;Genome_ID=SEQF7348.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-E;Complete_Interference=100%;Complete_Adaptation=50%;Best_type=I-E;Best_score=24.0;Genes=Cas3_1_CAS-I,Cas8e_4_CAS-I-E,Cse2gr11_5_CAS-I-E,Cas7_1_CAS-I-E,Cas5_0_IE,Cas6e_2_CAS-I-II-III-IV-V-VI,Cas1_0_IE,DEDDh_0_CAS-I-II-III-IV-V-VI;Positions=89,90,91,92,93,94,95,96;E-values=4.10e-68,9.60e-90,6.50e-60,3.80e-111,1.30e-26,4.30e-47,2.10e-106,1.70e-34;CoverageSeq=0.655,0.899,0.908,0.905,0.788,0.977,0.851,0.508;CoverageHMM=0.749,0.996,0.975,0.925,0.578,1.0,0.993,0.988;Strand_Interference=1;Strand_Adaptation=1
SEQF7348.1|CP040417.1	CCTyper	CDS	101746	102690	315	+	.	ID=SEQF7348.1|CP040417.1_95_cas;Genome_ID=SEQF7348.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IE;coding_strand=+;E-value=2.1e-106;Score=351.8;Coverage_Seq=0.8507936507936508;Coverage_Hmm=0.9925650557620818
SEQF7348.1|CP040417.1	CCTyper	CDS	1802354	1803268	305	+	.	ID=SEQF7348.1|CP040417.1_1692_cas;Genome_ID=SEQF7348.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=3.1999999999999996e-90;Score=298.8;Coverage_Seq=0.9049180327868852;Coverage_Hmm=1.0
SEQF7348.1|CP040417.1	CCTyper	CDS	1803265	1803588	108	+	.	ID=SEQF7348.1|CP040417.1_1693_cas;Genome_ID=SEQF7348.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.7000000000000002e-32;Score=108.8;Coverage_Seq=0.9351851851851852;Coverage_Hmm=0.8706896551724138
SEQF7348.1|CP040417.1	CCTyper	CDS	94119	96983	955	+	.	ID=SEQF7348.1|CP040417.1_89_cas;Genome_ID=SEQF7348.1;Feature_type=CDS;Product=Cas Prediction : Cas3_1_CAS-I;coding_strand=+;E-value=4.099999999999999e-68;Score=227.1;Coverage_Seq=0.6554973821989529;Coverage_Hmm=0.748993288590604
SEQF7348.1|CP040417.1	CCTyper	CDS	100383	100820	146	+	.	ID=SEQF7348.1|CP040417.1_93_cas;Genome_ID=SEQF7348.1;Feature_type=CDS;Product=Cas Prediction : Cas5_0_IE;coding_strand=+;E-value=1.3e-26;Score=90.4;Coverage_Seq=0.7876712328767124;Coverage_Hmm=0.5782608695652174
SEQF7348.1|CP040417.1	CCTyper	CDS	101115	101756	214	+	.	ID=SEQF7348.1|CP040417.1_94_cas;Genome_ID=SEQF7348.1;Feature_type=CDS;Product=Cas Prediction : Cas6e_2_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=4.3e-47;Score=157.8;Coverage_Seq=0.9766355140186916;Coverage_Hmm=1.0
SEQF7348.1|CP040417.1	CCTyper	CDS	99296	100372	359	+	.	ID=SEQF7348.1|CP040417.1_92_cas;Genome_ID=SEQF7348.1;Feature_type=CDS;Product=Cas Prediction : Cas7_1_CAS-I-E;coding_strand=+;E-value=3.8e-111;Score=368.7;Coverage_Seq=0.9052924791086351;Coverage_Hmm=0.924791086350975
SEQF7348.1|CP040417.1	CCTyper	CDS	96976	98661	562	+	.	ID=SEQF7348.1|CP040417.1_90_cas;Genome_ID=SEQF7348.1;Feature_type=CDS;Product=Cas Prediction : Cas8e_4_CAS-I-E;coding_strand=+;E-value=9.599999999999999e-90;Score=298.5;Coverage_Seq=0.8985765124555161;Coverage_Hmm=0.9956989247311828
SEQF7348.1|CP040417.1	CCTyper	CDS	1798687	1801047	787	+	.	ID=SEQF7348.1|CP040417.1_1690_cas;Genome_ID=SEQF7348.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=+;E-value=1.4e-131;Score=437.2;Coverage_Seq=0.97712833545108;Coverage_Hmm=0.9506024096385542
SEQF7348.1|CP040417.1	CCTyper	CDS	98675	99292	206	+	.	ID=SEQF7348.1|CP040417.1_91_cas;Genome_ID=SEQF7348.1;Feature_type=CDS;Product=Cas Prediction : Cse2gr11_5_CAS-I-E;coding_strand=+;E-value=6.5e-60;Score=198.9;Coverage_Seq=0.9077669902912622;Coverage_Hmm=0.9748743718592965
SEQF7348.1|CP040417.1	CCTyper	CDS	1803588	1804622	345	+	.	ID=SEQF7348.1|CP040417.1_1694_cas;Genome_ID=SEQF7348.1;Feature_type=CDS;Product=Cas Prediction : Csn2_2_CAS-II-A;coding_strand=+;E-value=4.1e-43;Score=144.3;Coverage_Seq=0.991304347826087;Coverage_Hmm=0.9970845481049563
SEQF7348.1|CP040417.1	CCTyper	CDS	102696	103604	303	+	.	ID=SEQF7348.1|CP040417.1_96_cas;Genome_ID=SEQF7348.1;Feature_type=CDS;Product=Cas Prediction : DEDDh_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.7e-34;Score=116.0;Coverage_Seq=0.5082508250825083;Coverage_Hmm=0.9875