SEQF7428.1|LN831034.1	CCTyper	repeat_region	1317644	1317938	295	+	.	ID=SEQF7428.1|LN831034.1_1;Genome_ID=SEQF7428.1;Note=Predictor:CCtyper;Start:1317644;End:1317938;Consensus_Repeat:ATTTCAATCCACTCACCCATGAAGGGTGAGAC;Number_of_Repeats:5;Repeat_Length:32;Average_Spacer_Length:33.8;Repeat_Identity:97.6;Spacer_Identity:39.2;Spacer_Length_Sem:0.5;Trusted:True;Cas_Type_Prediction: I-C;Cas_Subtype_Prediction:I-C;Subtype_Probability:0.995;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7428.1|LN831034.1	CCTyper	direct_repeat	1317644	1317675	32	+	.	ID=SEQF7428.1|LN831034.1_1_REPEAT1;Parent=SEQF7428.1|LN831034.1_1;Note=CTTTCAATCCACTCACCCATGAAGGGTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7428.1|LN831034.1	CCTyper	binding_site	1317676	1317708	33	+	.	ID=SEQF7428.1|LN831034.1_1_SPACER1;Parent=SEQF7428.1|LN831034.1_1;Note=GAGTTTACTCGCTCAAATCAAGGTATGCGGACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7428.1|LN831034.1	CCTyper	direct_repeat	1317709	1317740	32	+	.	ID=SEQF7428.1|LN831034.1_1_REPEAT2;Parent=SEQF7428.1|LN831034.1_1;Note=ATTTCAATCCACTCACCCATGAAGGGTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7428.1|LN831034.1	CCTyper	binding_site	1317741	1317774	34	+	.	ID=SEQF7428.1|LN831034.1_1_SPACER2;Parent=SEQF7428.1|LN831034.1_1;Note=GCTGTGACATTGCGGGATGTAATCAAAGTAAAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7428.1|LN831034.1	CCTyper	direct_repeat	1317775	1317806	32	+	.	ID=SEQF7428.1|LN831034.1_1_REPEAT3;Parent=SEQF7428.1|LN831034.1_1;Note=ATTTCAATCCACTCACCCATGAAGGGTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7428.1|LN831034.1	CCTyper	binding_site	1317807	1317839	33	+	.	ID=SEQF7428.1|LN831034.1_1_SPACER3;Parent=SEQF7428.1|LN831034.1_1;Note=TAAAGCAAACCTAGCAGAAGCAGAAAATGACTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7428.1|LN831034.1	CCTyper	direct_repeat	1317840	1317871	32	+	.	ID=SEQF7428.1|LN831034.1_1_REPEAT4;Parent=SEQF7428.1|LN831034.1_1;Note=ATTTCAATCCACTCACCCATGAAGGGTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7428.1|LN831034.1	CCTyper	binding_site	1317872	1317906	35	+	.	ID=SEQF7428.1|LN831034.1_1_SPACER4;Parent=SEQF7428.1|LN831034.1_1;Note=CTGATGTAATTGGTGATTTTCGTGATATGCTTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7428.1|LN831034.1	CCTyper	direct_repeat	1317907	1317938	32	+	.	ID=SEQF7428.1|LN831034.1_1_REPEAT5;Parent=SEQF7428.1|LN831034.1_1;Note=ATTTCAATCCACTCACCCATGAAGGGTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7428.1|LN831034.1	CCTyper	OPERON	1318087	1326099	8013	-	.	ID=SEQF7428.1|LN831034.1@29;Genome_ID=SEQF7428.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-C;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=I-C;Best_score=23.0;Genes=Cas2_4_CAS-I-II-III-IV-V-VI,Cas1_0_IC,Cas4_0_I-II,Cas7_2_CAS-I-C,Cas8c_0_IC,Cas5_0_IC,Cas3_1_CAS-I,Cas3HD_0_CAS-I;Positions=1344,1345,1346,1347,1348,1349,1350,1351;E-values=3.70e-33,5.70e-148,5.70e-36,2.20e-148,4.10e-179,2.30e-101,7.60e-130,1.00e-25;CoverageSeq=0.939,0.991,0.84,0.993,0.979,0.831,0.995,0.82;CoverageHMM=0.989,1.0,0.983,0.989,0.998,1.0,0.828,0.695;Strand_Interference=-1;Strand_Adaptation=-1
SEQF7428.1|LN831034.1	CCTyper	OPERON	812387	818352	5966	+	.	ID=SEQF7428.1|LN831034.1@18;Genome_ID=SEQF7428.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_1_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_1_CAS-II-A;Positions=789,790,791,792;E-values=0.00e+00,6.90e-104,1.60e-50,7.20e-109;CoverageSeq=0.996,0.928,0.99,0.982;CoverageHMM=1.0,0.996,0.905,0.995;Strand_Interference=1;Strand_Adaptation=1
SEQF7428.1|LN831034.1	CCTyper	CDS	1318391	1319416	342	-	.	ID=SEQF7428.1|LN831034.1_1345_cas;Genome_ID=SEQF7428.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IC;coding_strand=-;E-value=5.7e-148;Score=489.3;Coverage_Seq=0.9912280701754386;Coverage_Hmm=1.0
SEQF7428.1|LN831034.1	CCTyper	CDS	816493	817362	290	+	.	ID=SEQF7428.1|LN831034.1_790_cas;Genome_ID=SEQF7428.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=6.9e-104;Score=343.6;Coverage_Seq=0.9275862068965517;Coverage_Hmm=0.9963636363636363
SEQF7428.1|LN831034.1	CCTyper	CDS	1318087	1318380	98	-	.	ID=SEQF7428.1|LN831034.1_1344_cas;Genome_ID=SEQF7428.1;Feature_type=CDS;Product=Cas Prediction : Cas2_4_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=3.7e-33;Score=110.6;Coverage_Seq=0.9387755102040817;Coverage_Hmm=0.9887640449438202
SEQF7428.1|LN831034.1	CCTyper	CDS	817389	817700	104	+	.	ID=SEQF7428.1|LN831034.1_791_cas;Genome_ID=SEQF7428.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.6e-50;Score=167.0;Coverage_Seq=0.9903846153846154;Coverage_Hmm=0.9051724137931034
SEQF7428.1|LN831034.1	CCTyper	CDS	1325599	1326099	167	-	.	ID=SEQF7428.1|LN831034.1_1351_cas;Genome_ID=SEQF7428.1;Feature_type=CDS;Product=Cas Prediction : Cas3HD_0_CAS-I;coding_strand=-;E-value=9.999999999999999e-26;Score=87.5;Coverage_Seq=0.8203592814371258;Coverage_Hmm=0.6945812807881774
SEQF7428.1|LN831034.1	CCTyper	CDS	1323698	1325557	620	-	.	ID=SEQF7428.1|LN831034.1_1350_cas;Genome_ID=SEQF7428.1;Feature_type=CDS;Product=Cas Prediction : Cas3_1_CAS-I;coding_strand=-;E-value=7.600000000000001e-130;Score=431.2;Coverage_Seq=0.9951612903225806;Coverage_Hmm=0.8281879194630872
SEQF7428.1|LN831034.1	CCTyper	CDS	1319413	1320087	225	-	.	ID=SEQF7428.1|LN831034.1_1346_cas;Genome_ID=SEQF7428.1;Feature_type=CDS;Product=Cas Prediction : Cas4_0_I-II;coding_strand=-;E-value=5.7000000000000006e-36;Score=120.8;Coverage_Seq=0.84;Coverage_Hmm=0.9833333333333333
SEQF7428.1|LN831034.1	CCTyper	CDS	1322837	1323565	243	-	.	ID=SEQF7428.1|LN831034.1_1349_cas;Genome_ID=SEQF7428.1;Feature_type=CDS;Product=Cas Prediction : Cas5_0_IC;coding_strand=-;E-value=2.3e-101;Score=334.8;Coverage_Seq=0.831275720164609;Coverage_Hmm=1.0
SEQF7428.1|LN831034.1	CCTyper	CDS	1320089	1320937	283	-	.	ID=SEQF7428.1|LN831034.1_1347_cas;Genome_ID=SEQF7428.1;Feature_type=CDS;Product=Cas Prediction : Cas7_2_CAS-I-C;coding_strand=-;E-value=2.1999999999999998e-148;Score=489.9;Coverage_Seq=0.9929328621908127;Coverage_Hmm=0.9893992932862191
SEQF7428.1|LN831034.1	CCTyper	CDS	1320942	1322837	632	-	.	ID=SEQF7428.1|LN831034.1_1348_cas;Genome_ID=SEQF7428.1;Feature_type=CDS;Product=Cas Prediction : Cas8c_0_IC;coding_strand=-;E-value=4.1e-179;Score=593.6;Coverage_Seq=0.9794303797468354;Coverage_Hmm=0.9982993197278912
SEQF7428.1|LN831034.1	CCTyper	CDS	812387	816493	1369	+	.	ID=SEQF7428.1|LN831034.1_789_cas;Genome_ID=SEQF7428.1;Feature_type=CDS;Product=Cas Prediction : Cas9_1_II;coding_strand=+;E-value=0.0;Score=1682.3;Coverage_Seq=0.9963476990504018;Coverage_Hmm=1.0
SEQF7428.1|LN831034.1	CCTyper	CDS	817690	818352	221	+	.	ID=SEQF7428.1|LN831034.1_792_cas;Genome_ID=SEQF7428.1;Feature_type=CDS;Product=Cas Prediction : Csn2_1_CAS-II-A;coding_strand=+;E-value=7.2e-109;Score=359.3;Coverage_Seq=0.9819004524886877;Coverage_Hmm=0.9954128440366973