SEQF7466.1|CP044093.1	CCTyper	repeat_region	1409832	1410263	432	+	.	ID=SEQF7466.1|CP044093.1_1;Genome_ID=SEQF7466.1;Note=Predictor:CCtyper;Start:1409832;End:1410263;Consensus_Repeat:GTCTCACCCTTCATGGGTGAGTGGATTGAAAT;Number_of_Repeats:7;Repeat_Length:32;Average_Spacer_Length:34.7;Repeat_Identity:98.3;Spacer_Identity:45.1;Spacer_Length_Sem:0.4;Trusted:True;Cas_Type_Prediction: I-C;Cas_Subtype_Prediction:I-C;Subtype_Probability:0.995;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7466.1|CP044093.1	CCTyper	direct_repeat	1409832	1409863	32	+	.	ID=SEQF7466.1|CP044093.1_1_REPEAT1;Parent=SEQF7466.1|CP044093.1_1;Note=GTCTCACCCTTCATGGGTGAGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7466.1|CP044093.1	CCTyper	binding_site	1409864	1409897	34	+	.	ID=SEQF7466.1|CP044093.1_1_SPACER1;Parent=SEQF7466.1|CP044093.1_1;Note=ATCGATTTTGCAGATAAAAGGAAACATAGAGTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7466.1|CP044093.1	CCTyper	direct_repeat	1409898	1409929	32	+	.	ID=SEQF7466.1|CP044093.1_1_REPEAT2;Parent=SEQF7466.1|CP044093.1_1;Note=GTCTCACCCTTCATGGGTGAGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7466.1|CP044093.1	CCTyper	binding_site	1409930	1409965	36	+	.	ID=SEQF7466.1|CP044093.1_1_SPACER2;Parent=SEQF7466.1|CP044093.1_1;Note=AATTTCATCTCCTGCATCTTGATCAGTTAGGGTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7466.1|CP044093.1	CCTyper	direct_repeat	1409966	1409997	32	+	.	ID=SEQF7466.1|CP044093.1_1_REPEAT3;Parent=SEQF7466.1|CP044093.1_1;Note=GTCTCACCCTTCATGGGTGAGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7466.1|CP044093.1	CCTyper	binding_site	1409998	1410032	35	+	.	ID=SEQF7466.1|CP044093.1_1_SPACER3;Parent=SEQF7466.1|CP044093.1_1;Note=AGATTCGGCTAGATATTCTAAAAAATCGATAAAGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7466.1|CP044093.1	CCTyper	direct_repeat	1410033	1410064	32	+	.	ID=SEQF7466.1|CP044093.1_1_REPEAT4;Parent=SEQF7466.1|CP044093.1_1;Note=GTCTCACCCTTCATGGGTGAGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7466.1|CP044093.1	CCTyper	binding_site	1410065	1410099	35	+	.	ID=SEQF7466.1|CP044093.1_1_SPACER4;Parent=SEQF7466.1|CP044093.1_1;Note=TCCAACTTTTGTAAAAGTAGAATTTGCTACGTTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7466.1|CP044093.1	CCTyper	direct_repeat	1410100	1410131	32	+	.	ID=SEQF7466.1|CP044093.1_1_REPEAT5;Parent=SEQF7466.1|CP044093.1_1;Note=GTCTCACCCTTCATGGGTGAGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7466.1|CP044093.1	CCTyper	binding_site	1410132	1410166	35	+	.	ID=SEQF7466.1|CP044093.1_1_SPACER5;Parent=SEQF7466.1|CP044093.1_1;Note=ATTATTTTATTAAAGTTATCACGTAAATTTTGCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7466.1|CP044093.1	CCTyper	direct_repeat	1410167	1410198	32	+	.	ID=SEQF7466.1|CP044093.1_1_REPEAT6;Parent=SEQF7466.1|CP044093.1_1;Note=GTCTCACCCTTCATGGGTGAGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7466.1|CP044093.1	CCTyper	binding_site	1410199	1410231	33	+	.	ID=SEQF7466.1|CP044093.1_1_SPACER6;Parent=SEQF7466.1|CP044093.1_1;Note=CATTATATGAACAATGCCTTTGCGGAATTAGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7466.1|CP044093.1	CCTyper	direct_repeat	1410232	1410263	32	+	.	ID=SEQF7466.1|CP044093.1_1_REPEAT7;Parent=SEQF7466.1|CP044093.1_1;Note=GTCTCACCCTTCATGGGTGAGTGGATTGAAAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7466.1|CP044093.1	CCTyper	repeat_region	1787024	1787185	162	+	.	ID=SEQF7466.1|CP044093.1_2;Genome_ID=SEQF7466.1;Note=Predictor:CCtyper;Start:1787024;End:1787185;Consensus_Repeat:GACCATTCAAAACAGCATAGCTCTAAAAC;Number_of_Repeats:3;Repeat_Length:29;Average_Spacer_Length:37.5;Repeat_Identity:100.0;Spacer_Identity:53.1;Spacer_Length_Sem:0.5;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.996;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7466.1|CP044093.1	CCTyper	direct_repeat	1787024	1787052	29	+	.	ID=SEQF7466.1|CP044093.1_2_REPEAT1;Parent=SEQF7466.1|CP044093.1_2;Note=GACCATTCAAAACAGCATAGCTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7466.1|CP044093.1	CCTyper	binding_site	1787053	1787089	37	+	.	ID=SEQF7466.1|CP044093.1_2_SPACER1;Parent=SEQF7466.1|CP044093.1_2;Note=GTCAAACTCAATTTTTTGTCTAGCTCTATTGTTTTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7466.1|CP044093.1	CCTyper	direct_repeat	1787090	1787118	29	+	.	ID=SEQF7466.1|CP044093.1_2_REPEAT2;Parent=SEQF7466.1|CP044093.1_2;Note=GACCATTCAAAACAGCATAGCTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7466.1|CP044093.1	CCTyper	binding_site	1787119	1787156	38	+	.	ID=SEQF7466.1|CP044093.1_2_SPACER2;Parent=SEQF7466.1|CP044093.1_2;Note=ATAACCTAAGCGTTGGATGTTGTGGTCAATCGTTTTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7466.1|CP044093.1	CCTyper	direct_repeat	1787157	1787185	29	+	.	ID=SEQF7466.1|CP044093.1_2_REPEAT3;Parent=SEQF7466.1|CP044093.1_2;Note=GACCATTCAAAACAGCATAGCTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7466.1|CP044093.1	CCTyper	OPERON	1401664	1409683	8020	+	.	ID=SEQF7466.1|CP044093.1@31;Genome_ID=SEQF7466.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-C;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=I-C;Best_score=21.0;Genes=Cas3_1_CAS-I,Cas5_0_IC,Cas8c_0_IC,Cas7_2_CAS-I-C,Cas4_0_I-II,Cas1_0_IC,Cas2_4_CAS-I-II-III-IV-V-VI;Positions=1337,1338,1339,1340,1341,1342,1343;E-values=3.80e-150,5.50e-101,7.90e-177,2.40e-146,5.30e-36,1.60e-148,3.40e-33;CoverageSeq=0.934,0.831,0.979,0.993,0.84,0.991,0.939;CoverageHMM=0.995,1.0,0.998,0.989,0.983,1.0,0.989;Strand_Interference=1;Strand_Adaptation=1
SEQF7466.1|CP044093.1	CCTyper	OPERON	1787288	1793253	5966	-	.	ID=SEQF7466.1|CP044093.1@38;Genome_ID=SEQF7466.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Csn2_1_CAS-II-A,Cas2_5_CAS-I-II-III-IV-V-VI,Cas1_4_CAS-I-II-III-IV-V-VI,Cas9_1_II;Positions=1709,1710,1711,1712;E-values=2.30e-108,1.50e-50,6.40e-104,0.00e+00;CoverageSeq=0.982,0.99,0.928,0.996;CoverageHMM=0.995,0.905,0.996,1.0;Strand_Interference=-1;Strand_Adaptation=-1
SEQF7466.1|CP044093.1	CCTyper	CDS	1408354	1409379	342	+	.	ID=SEQF7466.1|CP044093.1_1342_cas;Genome_ID=SEQF7466.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IC;coding_strand=+;E-value=1.6e-148;Score=491.0;Coverage_Seq=0.9912280701754386;Coverage_Hmm=1.0
SEQF7466.1|CP044093.1	CCTyper	CDS	1788278	1789147	290	-	.	ID=SEQF7466.1|CP044093.1_1711_cas;Genome_ID=SEQF7466.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=6.4e-104;Score=343.6;Coverage_Seq=0.9275862068965517;Coverage_Hmm=0.9963636363636363
SEQF7466.1|CP044093.1	CCTyper	CDS	1409390	1409683	98	+	.	ID=SEQF7466.1|CP044093.1_1343_cas;Genome_ID=SEQF7466.1;Feature_type=CDS;Product=Cas Prediction : Cas2_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=3.4e-33;Score=110.6;Coverage_Seq=0.9387755102040817;Coverage_Hmm=0.9887640449438202
SEQF7466.1|CP044093.1	CCTyper	CDS	1787940	1788251	104	-	.	ID=SEQF7466.1|CP044093.1_1710_cas;Genome_ID=SEQF7466.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.5e-50;Score=167.0;Coverage_Seq=0.9903846153846154;Coverage_Hmm=0.9051724137931034
SEQF7466.1|CP044093.1	CCTyper	CDS	1401664	1404072	803	+	.	ID=SEQF7466.1|CP044093.1_1337_cas;Genome_ID=SEQF7466.1;Feature_type=CDS;Product=Cas Prediction : Cas3_1_CAS-I;coding_strand=+;E-value=3.8e-150;Score=498.2;Coverage_Seq=0.933997509339975;Coverage_Hmm=0.9946308724832215
SEQF7466.1|CP044093.1	CCTyper	CDS	1407683	1408357	225	+	.	ID=SEQF7466.1|CP044093.1_1341_cas;Genome_ID=SEQF7466.1;Feature_type=CDS;Product=Cas Prediction : Cas4_0_I-II;coding_strand=+;E-value=5.3000000000000005e-36;Score=120.8;Coverage_Seq=0.84;Coverage_Hmm=0.9833333333333333
SEQF7466.1|CP044093.1	CCTyper	CDS	1404205	1404933	243	+	.	ID=SEQF7466.1|CP044093.1_1338_cas;Genome_ID=SEQF7466.1;Feature_type=CDS;Product=Cas Prediction : Cas5_0_IC;coding_strand=+;E-value=5.5000000000000004e-101;Score=333.5;Coverage_Seq=0.831275720164609;Coverage_Hmm=1.0
SEQF7466.1|CP044093.1	CCTyper	CDS	1406833	1407681	283	+	.	ID=SEQF7466.1|CP044093.1_1340_cas;Genome_ID=SEQF7466.1;Feature_type=CDS;Product=Cas Prediction : Cas7_2_CAS-I-C;coding_strand=+;E-value=2.4e-146;Score=483.1;Coverage_Seq=0.9929328621908127;Coverage_Hmm=0.9893992932862191
SEQF7466.1|CP044093.1	CCTyper	CDS	1404933	1406828	632	+	.	ID=SEQF7466.1|CP044093.1_1339_cas;Genome_ID=SEQF7466.1;Feature_type=CDS;Product=Cas Prediction : Cas8c_0_IC;coding_strand=+;E-value=7.9e-177;Score=585.9;Coverage_Seq=0.9794303797468354;Coverage_Hmm=0.9982993197278912
SEQF7466.1|CP044093.1	CCTyper	CDS	1789147	1793253	1369	-	.	ID=SEQF7466.1|CP044093.1_1712_cas;Genome_ID=SEQF7466.1;Feature_type=CDS;Product=Cas Prediction : Cas9_1_II;coding_strand=-;E-value=0.0;Score=1673.9;Coverage_Seq=0.9963476990504018;Coverage_Hmm=1.0
SEQF7466.1|CP044093.1	CCTyper	CDS	1787288	1787950	221	-	.	ID=SEQF7466.1|CP044093.1_1709_cas;Genome_ID=SEQF7466.1;Feature_type=CDS;Product=Cas Prediction : Csn2_1_CAS-II-A;coding_strand=-;E-value=2.3e-108;Score=357.5;Coverage_Seq=0.9819004524886877;Coverage_Hmm=0.9954128440366973