SEQF7561.1|JALCXM010000002.1	CCTyper	repeat_region	262231	262628	398	+	.	ID=SEQF7561.1|JALCXM010000002.1_1;Genome_ID=SEQF7561.1;Note=Predictor:CCtyper;Start:262231;End:262628;Consensus_Repeat:GTTCTCGTCCCCTTTTATACGGGGTATTCTCTGATT;Number_of_Repeats:6;Repeat_Length:36;Average_Spacer_Length:36.4;Repeat_Identity:94.9;Spacer_Identity:45.9;Spacer_Length_Sem:0.4;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.995;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7561.1|JALCXM010000002.1	CCTyper	direct_repeat	262231	262266	36	+	.	ID=SEQF7561.1|JALCXM010000002.1_1_REPEAT1;Parent=SEQF7561.1|JALCXM010000002.1_1;Note=CTTTTTGTCCCCTTTTATACGGGGTATTCTCTGATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7561.1|JALCXM010000002.1	CCTyper	binding_site	262267	262302	36	+	.	ID=SEQF7561.1|JALCXM010000002.1_1_SPACER1;Parent=SEQF7561.1|JALCXM010000002.1_1;Note=TCTTGCCGTCCATAACATCTTTAGCTAATTGGAACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7561.1|JALCXM010000002.1	CCTyper	direct_repeat	262303	262338	36	+	.	ID=SEQF7561.1|JALCXM010000002.1_1_REPEAT2;Parent=SEQF7561.1|JALCXM010000002.1_1;Note=GTTCTCGTCCCCTTTTATACGGGGTATTCTCTGATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7561.1|JALCXM010000002.1	CCTyper	binding_site	262339	262373	35	+	.	ID=SEQF7561.1|JALCXM010000002.1_1_SPACER2;Parent=SEQF7561.1|JALCXM010000002.1_1;Note=TAGAAGACCCAGTCGACAGTGTAGAAGATTTACCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7561.1|JALCXM010000002.1	CCTyper	direct_repeat	262374	262409	36	+	.	ID=SEQF7561.1|JALCXM010000002.1_1_REPEAT3;Parent=SEQF7561.1|JALCXM010000002.1_1;Note=GTTCTCGTCCCCTTTTATACGGGGTATTCTCTGATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7561.1|JALCXM010000002.1	CCTyper	binding_site	262410	262446	37	+	.	ID=SEQF7561.1|JALCXM010000002.1_1_SPACER3;Parent=SEQF7561.1|JALCXM010000002.1_1;Note=AGAAACAAACGGCGGATATGAGCATATAGTAAAATAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7561.1|JALCXM010000002.1	CCTyper	direct_repeat	262447	262482	36	+	.	ID=SEQF7561.1|JALCXM010000002.1_1_REPEAT4;Parent=SEQF7561.1|JALCXM010000002.1_1;Note=GTTCTCGTCCCCTTTTATACGGGGTATTCTCTGATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7561.1|JALCXM010000002.1	CCTyper	binding_site	262483	262519	37	+	.	ID=SEQF7561.1|JALCXM010000002.1_1_SPACER4;Parent=SEQF7561.1|JALCXM010000002.1_1;Note=TAATGACACTTATGAATTGGTTAATAGAAATACAGAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7561.1|JALCXM010000002.1	CCTyper	direct_repeat	262520	262555	36	+	.	ID=SEQF7561.1|JALCXM010000002.1_1_REPEAT5;Parent=SEQF7561.1|JALCXM010000002.1_1;Note=GTTCTCGTCCCCTTTTATACGGGGTATTCTCTGATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7561.1|JALCXM010000002.1	CCTyper	binding_site	262556	262592	37	+	.	ID=SEQF7561.1|JALCXM010000002.1_1_SPACER5;Parent=SEQF7561.1|JALCXM010000002.1_1;Note=AAGAAAAAGAAGTAGATGAAGTTAATGAAAGATTGAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7561.1|JALCXM010000002.1	CCTyper	direct_repeat	262593	262628	36	+	.	ID=SEQF7561.1|JALCXM010000002.1_1_REPEAT6;Parent=SEQF7561.1|JALCXM010000002.1_1;Note=GTTCTCGTCCCCTTTTATACGGGGTATTCTCTGATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7561.1|JALCXM010000003.1	CCTyper	repeat_region	243178	243379	202	+	.	ID=SEQF7561.1|JALCXM010000003.1_2;Genome_ID=SEQF7561.1;Note=Predictor:CCtyper;Start:243178;End:243379;Consensus_Repeat:ACAAAGCAAGTTGGGGTGGGGCCCCAACAAA;Number_of_Repeats:4;Repeat_Length:31;Average_Spacer_Length:26.0;Repeat_Identity:88.6;Spacer_Identity:63.0;Spacer_Length_Sem:0.0;Trusted:False;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:VI-B1;Subtype_Probability:0.609;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7561.1|JALCXM010000003.1	CCTyper	direct_repeat	243178	243208	31	+	.	ID=SEQF7561.1|JALCXM010000003.1_2_REPEAT1;Parent=SEQF7561.1|JALCXM010000003.1_2;Note=GCCAAGCAAATTGGAGTGGGGCCCCAACAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7561.1|JALCXM010000003.1	CCTyper	binding_site	243209	243234	26	+	.	ID=SEQF7561.1|JALCXM010000003.1_2_SPACER1;Parent=SEQF7561.1|JALCXM010000003.1_2;Note=ATGGCTTTCCAAAAGAAAGGCAACGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7561.1|JALCXM010000003.1	CCTyper	direct_repeat	243235	243265	31	+	.	ID=SEQF7561.1|JALCXM010000003.1_2_REPEAT2;Parent=SEQF7561.1|JALCXM010000003.1_2;Note=ACAAAGCAAGTTGGGGTGGGGCCCCAACAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7561.1|JALCXM010000003.1	CCTyper	binding_site	243266	243291	26	+	.	ID=SEQF7561.1|JALCXM010000003.1_2_SPACER2;Parent=SEQF7561.1|JALCXM010000003.1_2;Note=ATGGCTTTCCAAAAGAAAGGCAACGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7561.1|JALCXM010000003.1	CCTyper	direct_repeat	243292	243322	31	+	.	ID=SEQF7561.1|JALCXM010000003.1_2_REPEAT3;Parent=SEQF7561.1|JALCXM010000003.1_2;Note=ACAAAGCAAGTTGGGGTGGGGCCCCAACAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7561.1|JALCXM010000003.1	CCTyper	binding_site	243323	243348	26	+	.	ID=SEQF7561.1|JALCXM010000003.1_2_SPACER3;Parent=SEQF7561.1|JALCXM010000003.1_2;Note=GAGAATTTCGATAAGAAATTCACCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7561.1|JALCXM010000003.1	CCTyper	direct_repeat	243349	243379	31	+	.	ID=SEQF7561.1|JALCXM010000003.1_2_REPEAT4;Parent=SEQF7561.1|JALCXM010000003.1_2;Note=ACAAAGCAAGTTGGGGTGGGGCCCCAACAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7561.1|JALCXM010000002.1	CCTyper	OPERON	262815	272745	9931	-	.	ID=SEQF7561.1|JALCXM010000002.1@9;Genome_ID=SEQF7561.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=19.0;Genes=Cas6_0_CAS-I-II-III-IV-V-VI,Csm6_1_CAS-III,Csm5gr7_0_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm2gr11_0_CAS-III-A,Cas10_1_CAS-III,Cas2_0_CAS-I-II-III-IV-V-VI,Cas1_0_II,AbiEii_0_CAS-III;Positions=238,240,241,242,243,244,245,246,247,248;E-values=1.20e-26,4.90e-81,5.70e-30,2.30e-50,1.90e-80,7.00e-25,3.30e-205,8.60e-23,6.40e-89,5.10e-09;CoverageSeq=0.801,0.802,0.73,0.99,0.953,0.676,0.846,0.902,0.921,0.534;CoverageHMM=0.995,0.722,0.644,0.975,0.991,1.0,1.0,0.967,0.996,0.426;Strand_Interference=-1;Strand_Adaptation=NA
SEQF7561.1|JALCXM010000002.1	CCTyper	CDS	271870	272745	292	+	.	ID=SEQF7561.1|JALCXM010000002.1_248_cas;Genome_ID=SEQF7561.1;Feature_type=CDS;Product=Cas Prediction : AbiEii_0_CAS-III;coding_strand=+;E-value=5.1e-09;Score=33.2;Coverage_Seq=0.5342465753424658;Coverage_Hmm=0.426056338028169
SEQF7561.1|JALCXM010000002.1	CCTyper	CDS	267866	270139	758	-	.	ID=SEQF7561.1|JALCXM010000002.1_245_cas;Genome_ID=SEQF7561.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=-;E-value=3.3e-205;Score=680.6;Coverage_Seq=0.8456464379947229;Coverage_Hmm=1.0
SEQF7561.1|JALCXM010000002.1	CCTyper	CDS	270460	271365	302	-	.	ID=SEQF7561.1|JALCXM010000002.1_247_cas;Genome_ID=SEQF7561.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_II;coding_strand=-;E-value=6.4e-89;Score=295.0;Coverage_Seq=0.9205298013245033;Coverage_Hmm=0.9964028776978417
SEQF7561.1|JALCXM010000002.1	CCTyper	CDS	270155	270460	102	-	.	ID=SEQF7561.1|JALCXM010000002.1_246_cas;Genome_ID=SEQF7561.1;Feature_type=CDS;Product=Cas Prediction : Cas2_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=8.6e-23;Score=77.8;Coverage_Seq=0.9019607843137255;Coverage_Hmm=0.9666666666666667
SEQF7561.1|JALCXM010000002.1	CCTyper	CDS	262815	263567	251	-	.	ID=SEQF7561.1|JALCXM010000002.1_238_cas;Genome_ID=SEQF7561.1;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.2e-26;Score=91.5;Coverage_Seq=0.8007968127490039;Coverage_Hmm=0.9948453608247423
SEQF7561.1|JALCXM010000002.1	CCTyper	CDS	267439	267864	142	-	.	ID=SEQF7561.1|JALCXM010000002.1_244_cas;Genome_ID=SEQF7561.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_0_CAS-III-A;coding_strand=-;E-value=6.9999999999999995e-25;Score=85.0;Coverage_Seq=0.676056338028169;Coverage_Hmm=1.0
SEQF7561.1|JALCXM010000002.1	CCTyper	CDS	266793	267437	215	-	.	ID=SEQF7561.1|JALCXM010000002.1_243_cas;Genome_ID=SEQF7561.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=-;E-value=1.9000000000000002e-80;Score=266.9;Coverage_Seq=0.9534883720930233;Coverage_Hmm=0.9906976744186047
SEQF7561.1|JALCXM010000002.1	CCTyper	CDS	265874	266782	303	-	.	ID=SEQF7561.1|JALCXM010000002.1_242_cas;Genome_ID=SEQF7561.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=-;E-value=2.3e-50;Score=168.8;Coverage_Seq=0.9900990099009901;Coverage_Hmm=0.9746031746031746
SEQF7561.1|JALCXM010000002.1	CCTyper	CDS	264860	265870	337	-	.	ID=SEQF7561.1|JALCXM010000002.1_241_cas;Genome_ID=SEQF7561.1;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=-;E-value=5.7000000000000005e-30;Score=101.9;Coverage_Seq=0.7299703264094956;Coverage_Hmm=0.6438356164383562
SEQF7561.1|JALCXM010000002.1	CCTyper	CDS	263878	264846	323	-	.	ID=SEQF7561.1|JALCXM010000002.1_240_cas;Genome_ID=SEQF7561.1;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=-;E-value=4.9e-81;Score=269.6;Coverage_Seq=0.8018575851393189;Coverage_Hmm=0.7222222222222222