SEQF7563.1|JALCXT010000012.1	CCTyper	repeat_region	84075	84405	331	+	.	ID=SEQF7563.1|JALCXT010000012.1_1;Genome_ID=SEQF7563.1;Note=Predictor:CCtyper;Start:84075;End:84405;Consensus_Repeat:AATCAGAGAATACCCCGTATAAAAGGGGACGAGAACT;Number_of_Repeats:5;Repeat_Length:37;Average_Spacer_Length:36.5;Repeat_Identity:97.9;Spacer_Identity:47.6;Spacer_Length_Sem:1.0;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.993;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7563.1|JALCXT010000012.1	CCTyper	direct_repeat	84075	84111	37	+	.	ID=SEQF7563.1|JALCXT010000012.1_1_REPEAT1;Parent=SEQF7563.1|JALCXT010000012.1_1;Note=AATCAGAGAATACCCCGTATAAAAGGGGACGAGAACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7563.1|JALCXT010000012.1	CCTyper	binding_site	84112	84145	34	+	.	ID=SEQF7563.1|JALCXT010000012.1_1_SPACER1;Parent=SEQF7563.1|JALCXT010000012.1_1;Note=CAATATTATCTTTATTAATATCTTCACCCATAGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7563.1|JALCXT010000012.1	CCTyper	direct_repeat	84146	84182	37	+	.	ID=SEQF7563.1|JALCXT010000012.1_1_REPEAT2;Parent=SEQF7563.1|JALCXT010000012.1_1;Note=AATCAGAGAATACCCCGTATAAAAGGGGACGAGAACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7563.1|JALCXT010000012.1	CCTyper	binding_site	84183	84219	37	+	.	ID=SEQF7563.1|JALCXT010000012.1_1_SPACER2;Parent=SEQF7563.1|JALCXT010000012.1_1;Note=CCTTTTTTCTTTTTAAATAGTTCGTTTTGATATTTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7563.1|JALCXT010000012.1	CCTyper	direct_repeat	84220	84256	37	+	.	ID=SEQF7563.1|JALCXT010000012.1_1_REPEAT3;Parent=SEQF7563.1|JALCXT010000012.1_1;Note=AATCAGAGAATACCCCGTATAAAAGGGGACGAGAACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7563.1|JALCXT010000012.1	CCTyper	binding_site	84257	84295	39	+	.	ID=SEQF7563.1|JALCXT010000012.1_1_SPACER3;Parent=SEQF7563.1|JALCXT010000012.1_1;Note=GAGTGGTTTTTTTATTTTGCATTTTAAGCCCTTTTTAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7563.1|JALCXT010000012.1	CCTyper	direct_repeat	84296	84332	37	+	.	ID=SEQF7563.1|JALCXT010000012.1_1_REPEAT4;Parent=SEQF7563.1|JALCXT010000012.1_1;Note=AATCAGAGAATACCCCGTATAAAAGGGGACGAGAACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7563.1|JALCXT010000012.1	CCTyper	binding_site	84333	84368	36	+	.	ID=SEQF7563.1|JALCXT010000012.1_1_SPACER4;Parent=SEQF7563.1|JALCXT010000012.1_1;Note=TCTGTATTTCTATTAACCAATTCATAAGTGTCATTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7563.1|JALCXT010000012.1	CCTyper	direct_repeat	84369	84405	37	+	.	ID=SEQF7563.1|JALCXT010000012.1_1_REPEAT5;Parent=SEQF7563.1|JALCXT010000012.1_1;Note=AATCAGAGAATACCCCGTATAAAAGGGGACGAGAACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7563.1|JALCXT010000012.1	CCTyper	OPERON	73955	83888	9934	+	.	ID=SEQF7563.1|JALCXT010000012.1@3;Genome_ID=SEQF7563.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=19.0;Genes=AbiEii_0_CAS-III,Cas1_0_II,Cas2_0_CAS-I-II-III-IV-V-VI,Cas10_1_CAS-III,Csm2gr11_0_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm5gr7_0_CAS-III-A-III-D,Csm6_1_CAS-III,Cas6_0_CAS-I-II-III-IV-V-VI;Positions=67,68,69,70,71,72,73,74,75,77;E-values=5.20e-09,6.50e-89,8.70e-23,3.40e-205,7.20e-25,1.90e-80,2.30e-50,5.80e-30,5.00e-81,1.20e-26;CoverageSeq=0.534,0.921,0.902,0.846,0.676,0.953,0.99,0.73,0.802,0.801;CoverageHMM=0.426,0.996,0.967,1.0,1.0,0.991,0.975,0.644,0.722,0.995;Strand_Interference=1;Strand_Adaptation=NA
SEQF7563.1|JALCXT010000012.1	CCTyper	CDS	73955	74830	292	-	.	ID=SEQF7563.1|JALCXT010000012.1_67_cas;Genome_ID=SEQF7563.1;Feature_type=CDS;Product=Cas Prediction : AbiEii_0_CAS-III;coding_strand=-;E-value=5.2e-09;Score=33.2;Coverage_Seq=0.5342465753424658;Coverage_Hmm=0.426056338028169
SEQF7563.1|JALCXT010000012.1	CCTyper	CDS	76561	78834	758	+	.	ID=SEQF7563.1|JALCXT010000012.1_70_cas;Genome_ID=SEQF7563.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=+;E-value=3.3999999999999997e-205;Score=680.6;Coverage_Seq=0.8456464379947229;Coverage_Hmm=1.0
SEQF7563.1|JALCXT010000012.1	CCTyper	CDS	75335	76240	302	+	.	ID=SEQF7563.1|JALCXT010000012.1_68_cas;Genome_ID=SEQF7563.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_II;coding_strand=+;E-value=6.5e-89;Score=295.0;Coverage_Seq=0.9205298013245033;Coverage_Hmm=0.9964028776978417
SEQF7563.1|JALCXT010000012.1	CCTyper	CDS	76240	76545	102	+	.	ID=SEQF7563.1|JALCXT010000012.1_69_cas;Genome_ID=SEQF7563.1;Feature_type=CDS;Product=Cas Prediction : Cas2_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=8.7e-23;Score=77.8;Coverage_Seq=0.9019607843137255;Coverage_Hmm=0.9666666666666667
SEQF7563.1|JALCXT010000012.1	CCTyper	CDS	83136	83888	251	+	.	ID=SEQF7563.1|JALCXT010000012.1_77_cas;Genome_ID=SEQF7563.1;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.2e-26;Score=91.5;Coverage_Seq=0.8007968127490039;Coverage_Hmm=0.9948453608247423
SEQF7563.1|JALCXT010000012.1	CCTyper	CDS	78836	79261	142	+	.	ID=SEQF7563.1|JALCXT010000012.1_71_cas;Genome_ID=SEQF7563.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_0_CAS-III-A;coding_strand=+;E-value=7.2e-25;Score=85.0;Coverage_Seq=0.676056338028169;Coverage_Hmm=1.0
SEQF7563.1|JALCXT010000012.1	CCTyper	CDS	79263	79907	215	+	.	ID=SEQF7563.1|JALCXT010000012.1_72_cas;Genome_ID=SEQF7563.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=+;E-value=1.9000000000000002e-80;Score=266.9;Coverage_Seq=0.9534883720930233;Coverage_Hmm=0.9906976744186047
SEQF7563.1|JALCXT010000012.1	CCTyper	CDS	79918	80826	303	+	.	ID=SEQF7563.1|JALCXT010000012.1_73_cas;Genome_ID=SEQF7563.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=+;E-value=2.3e-50;Score=168.8;Coverage_Seq=0.9900990099009901;Coverage_Hmm=0.9746031746031746
SEQF7563.1|JALCXT010000012.1	CCTyper	CDS	80830	81840	337	+	.	ID=SEQF7563.1|JALCXT010000012.1_74_cas;Genome_ID=SEQF7563.1;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=+;E-value=5.8000000000000005e-30;Score=101.9;Coverage_Seq=0.7299703264094956;Coverage_Hmm=0.6438356164383562
SEQF7563.1|JALCXT010000012.1	CCTyper	CDS	81854	82822	323	+	.	ID=SEQF7563.1|JALCXT010000012.1_75_cas;Genome_ID=SEQF7563.1;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=+;E-value=5.000000000000001e-81;Score=269.6;Coverage_Seq=0.8018575851393189;Coverage_Hmm=0.7222222222222222