SEQF7611.1|RJOK01000009.1	CCTyper	repeat_region	7157	8708	1552	+	.	ID=SEQF7611.1|RJOK01000009.1_1;Genome_ID=SEQF7611.1;Note=Predictor:CCtyper;Start:7157;End:8708;Consensus_Repeat:GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Number_of_Repeats:24;Repeat_Length:36;Average_Spacer_Length:29.9;Repeat_Identity:94.3;Spacer_Identity:41.2;Spacer_Length_Sem:0.1;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.986;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	7157	7192	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT1;Parent=SEQF7611.1|RJOK01000009.1_1;Note=ATTTTGATACTAAGTTTTTCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	7193	7222	30	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER1;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GAGGACGTGGCATTTTACGTTTAATAATTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	7223	7258	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT2;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	7259	7288	30	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER2;Parent=SEQF7611.1|RJOK01000009.1_1;Note=AAATCGATTTCCGTGTGCGTGTGCTTGTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	7289	7324	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT3;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	7325	7354	30	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER3;Parent=SEQF7611.1|RJOK01000009.1_1;Note=TGTCGTCCCAAGTTTCTTGGAACTTTTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	7355	7390	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT4;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	7391	7420	30	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER4;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTGCGAGTGTTGCAAGCGGATAAACTGCCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	7421	7456	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT5;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	7457	7486	30	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER5;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GCGGTTGCCGCAGGGATTCAATCCTTTAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	7487	7522	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT6;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	7523	7552	30	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER6;Parent=SEQF7611.1|RJOK01000009.1_1;Note=CGCGCCTTGTGCTCGCTATTGCTTTACCTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	7553	7588	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT7;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	7589	7618	30	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER7;Parent=SEQF7611.1|RJOK01000009.1_1;Note=TAATCCAATTGTCAACATTTATATTATTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	7619	7654	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT8;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	7655	7684	30	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER8;Parent=SEQF7611.1|RJOK01000009.1_1;Note=ATAAAGTACTATCTCTGGTATTACGTTCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	7685	7720	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT9;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	7721	7750	30	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER9;Parent=SEQF7611.1|RJOK01000009.1_1;Note=TTATATAATAACAGTATAAAAAATAATTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	7751	7786	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT10;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	7787	7816	30	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER10;Parent=SEQF7611.1|RJOK01000009.1_1;Note=ATATTTTCCTTTCTTTATGTTATAGTGTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	7817	7852	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT11;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	7853	7882	30	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER11;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GATTCTTGGCGGTCGGAAATTTCCTTATCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	7883	7918	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT12;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	7919	7948	30	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER12;Parent=SEQF7611.1|RJOK01000009.1_1;Note=TGTGAGAGGTATTCGGTATAAACGTTGCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	7949	7984	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT13;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	7985	8014	30	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER13;Parent=SEQF7611.1|RJOK01000009.1_1;Note=TGATCGCTAGGGACATTATTGTTATTACCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	8015	8050	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT14;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	8051	8079	29	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER14;Parent=SEQF7611.1|RJOK01000009.1_1;Note=TATTTGATTGTGATTGTAATAATGACTCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	8080	8115	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT15;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	8116	8145	30	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER15;Parent=SEQF7611.1|RJOK01000009.1_1;Note=TTACACAAAATACGACTTAGATGAAGATAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	8146	8181	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT16;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	8182	8211	30	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER16;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GCTTTCCTTGGGTTTTAATGTAATAATTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	8212	8247	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT17;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	8248	8277	30	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER17;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GGATTGCATAAGGTTTCACACTATCTACAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	8278	8313	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT18;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	8314	8343	30	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER18;Parent=SEQF7611.1|RJOK01000009.1_1;Note=ACCCTTCAGAAAATTGATTTTCTACAAATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	8344	8379	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT19;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	8380	8409	30	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER19;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GATGCCATTAAACAAGTCCTCCCTTAATTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	8410	8445	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT20;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	8446	8475	30	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER20;Parent=SEQF7611.1|RJOK01000009.1_1;Note=ATAGATATTTGGAATTATTGCCTTTAACAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	8476	8511	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT21;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	8512	8541	30	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER21;Parent=SEQF7611.1|RJOK01000009.1_1;Note=TGGGGCGTGTCACTCATTTTGGGTAGTGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	8542	8577	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT22;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	8578	8607	30	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER22;Parent=SEQF7611.1|RJOK01000009.1_1;Note=TTCCGCAATCACATTGACAAAGCCAGTATA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	8608	8643	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT23;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	binding_site	8644	8672	29	+	.	ID=SEQF7611.1|RJOK01000009.1_1_SPACER23;Parent=SEQF7611.1|RJOK01000009.1_1;Note=CAAGTAAGCGCACATGCTAAAAGGGTTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	direct_repeat	8673	8708	36	+	.	ID=SEQF7611.1|RJOK01000009.1_1_REPEAT24;Parent=SEQF7611.1|RJOK01000009.1_1;Note=GTTTTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF7611.1|RJOK01000009.1	CCTyper	OPERON	8781	14593	5813	-	.	ID=SEQF7611.1|RJOK01000009.1@1;Genome_ID=SEQF7611.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Csn2_2_CAS-II-A,Cas2_5_CAS-I-II-III-IV-V-VI,Cas1_4_CAS-I-II-III-IV-V-VI,Cas9_0_II;Positions=10,11,12,13;E-values=6.00e-144,4.50e-32,1.20e-99,4.50e-201;CoverageSeq=0.994,0.963,0.908,0.72;CoverageHMM=1.0,0.897,0.996,0.981;Strand_Interference=-1;Strand_Adaptation=-1
SEQF7611.1|RJOK01000009.1	CCTyper	CDS	10144	11055	304	-	.	ID=SEQF7611.1|RJOK01000009.1_12_cas;Genome_ID=SEQF7611.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.2e-99;Score=329.8;Coverage_Seq=0.9078947368421053;Coverage_Hmm=0.9963636363636363
SEQF7611.1|RJOK01000009.1	CCTyper	CDS	9821	10144	108	-	.	ID=SEQF7611.1|RJOK01000009.1_11_cas;Genome_ID=SEQF7611.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=4.5e-32;Score=107.6;Coverage_Seq=0.9629629629629629;Coverage_Hmm=0.896551724137931
SEQF7611.1|RJOK01000009.1	CCTyper	CDS	11216	14593	1126	-	.	ID=SEQF7611.1|RJOK01000009.1_13_cas;Genome_ID=SEQF7611.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=-;E-value=4.5e-201;Score=667.1;Coverage_Seq=0.7202486678507993;Coverage_Hmm=0.980722891566265
SEQF7611.1|RJOK01000009.1	CCTyper	CDS	8781	9824	348	-	.	ID=SEQF7611.1|RJOK01000009.1_10_cas;Genome_ID=SEQF7611.1;Feature_type=CDS;Product=Cas Prediction : Csn2_2_CAS-II-A;coding_strand=-;E-value=6e-144;Score=476.0;Coverage_Seq=0.9942528735632183;Coverage_Hmm=1.0