SEQF8172.1|CP090411.1	CCTyper	repeat_region	127458	128483	1026	+	.	ID=SEQF8172.1|CP090411.1_1;Genome_ID=SEQF8172.1;Note=Predictor:CCtyper;Start:127458;End:128483;Consensus_Repeat:GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC;Number_of_Repeats:16;Repeat_Length:36;Average_Spacer_Length:30;Repeat_Identity:95.1;Spacer_Identity:44.6;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.914;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	direct_repeat	127458	127493	36	+	.	ID=SEQF8172.1|CP090411.1_1_REPEAT1;Parent=SEQF8172.1|CP090411.1_1;Note=GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	binding_site	127494	127523	30	+	.	ID=SEQF8172.1|CP090411.1_1_SPACER1;Parent=SEQF8172.1|CP090411.1_1;Note=AAATTCGTCGCAAAATTAGACCCCTATCAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	direct_repeat	127524	127559	36	+	.	ID=SEQF8172.1|CP090411.1_1_REPEAT2;Parent=SEQF8172.1|CP090411.1_1;Note=GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	binding_site	127560	127589	30	+	.	ID=SEQF8172.1|CP090411.1_1_SPACER2;Parent=SEQF8172.1|CP090411.1_1;Note=AGCACGTTTGAACAAGTACGCTAAGCAACG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	direct_repeat	127590	127625	36	+	.	ID=SEQF8172.1|CP090411.1_1_REPEAT3;Parent=SEQF8172.1|CP090411.1_1;Note=GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	binding_site	127626	127655	30	+	.	ID=SEQF8172.1|CP090411.1_1_SPACER3;Parent=SEQF8172.1|CP090411.1_1;Note=GTATGCAAATCTATAATGCTGCTTATTATA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	direct_repeat	127656	127691	36	+	.	ID=SEQF8172.1|CP090411.1_1_REPEAT4;Parent=SEQF8172.1|CP090411.1_1;Note=GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	binding_site	127692	127721	30	+	.	ID=SEQF8172.1|CP090411.1_1_SPACER4;Parent=SEQF8172.1|CP090411.1_1;Note=CCTACTTCTTTTTTATTAATCGCATTATTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	direct_repeat	127722	127757	36	+	.	ID=SEQF8172.1|CP090411.1_1_REPEAT5;Parent=SEQF8172.1|CP090411.1_1;Note=GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	binding_site	127758	127787	30	+	.	ID=SEQF8172.1|CP090411.1_1_SPACER5;Parent=SEQF8172.1|CP090411.1_1;Note=TTAACCATCGCTAACATTGGTCGAGCTACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	direct_repeat	127788	127823	36	+	.	ID=SEQF8172.1|CP090411.1_1_REPEAT6;Parent=SEQF8172.1|CP090411.1_1;Note=GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	binding_site	127824	127853	30	+	.	ID=SEQF8172.1|CP090411.1_1_SPACER6;Parent=SEQF8172.1|CP090411.1_1;Note=AAACTGTTTTATTAACGCATTAATGAAGAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	direct_repeat	127854	127889	36	+	.	ID=SEQF8172.1|CP090411.1_1_REPEAT7;Parent=SEQF8172.1|CP090411.1_1;Note=GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	binding_site	127890	127919	30	+	.	ID=SEQF8172.1|CP090411.1_1_SPACER7;Parent=SEQF8172.1|CP090411.1_1;Note=GAAATAAAAAAGCCCAGAGCATAAAGCCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	direct_repeat	127920	127955	36	+	.	ID=SEQF8172.1|CP090411.1_1_REPEAT8;Parent=SEQF8172.1|CP090411.1_1;Note=GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	binding_site	127956	127985	30	+	.	ID=SEQF8172.1|CP090411.1_1_SPACER8;Parent=SEQF8172.1|CP090411.1_1;Note=GAAATAAAAAAGCCCAGAGCATAAAGCCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	direct_repeat	127986	128021	36	+	.	ID=SEQF8172.1|CP090411.1_1_REPEAT9;Parent=SEQF8172.1|CP090411.1_1;Note=GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	binding_site	128022	128051	30	+	.	ID=SEQF8172.1|CP090411.1_1_SPACER9;Parent=SEQF8172.1|CP090411.1_1;Note=TATCACAGAAAGTTCTCCAGCAACATTATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	direct_repeat	128052	128087	36	+	.	ID=SEQF8172.1|CP090411.1_1_REPEAT10;Parent=SEQF8172.1|CP090411.1_1;Note=GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	binding_site	128088	128117	30	+	.	ID=SEQF8172.1|CP090411.1_1_SPACER10;Parent=SEQF8172.1|CP090411.1_1;Note=GAACCATTTACTTCATACGTGATGTTGGCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	direct_repeat	128118	128153	36	+	.	ID=SEQF8172.1|CP090411.1_1_REPEAT11;Parent=SEQF8172.1|CP090411.1_1;Note=GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	binding_site	128154	128183	30	+	.	ID=SEQF8172.1|CP090411.1_1_SPACER11;Parent=SEQF8172.1|CP090411.1_1;Note=TATCTAATGTATTTTATGGATCACGTCAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	direct_repeat	128184	128219	36	+	.	ID=SEQF8172.1|CP090411.1_1_REPEAT12;Parent=SEQF8172.1|CP090411.1_1;Note=GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	binding_site	128220	128249	30	+	.	ID=SEQF8172.1|CP090411.1_1_SPACER12;Parent=SEQF8172.1|CP090411.1_1;Note=TTGCTGTCTTACACCTATGTCAATTCAACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	direct_repeat	128250	128285	36	+	.	ID=SEQF8172.1|CP090411.1_1_REPEAT13;Parent=SEQF8172.1|CP090411.1_1;Note=GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	binding_site	128286	128315	30	+	.	ID=SEQF8172.1|CP090411.1_1_SPACER13;Parent=SEQF8172.1|CP090411.1_1;Note=TTGCTGTCTTACACCTATGTCAATTCAACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	direct_repeat	128316	128351	36	+	.	ID=SEQF8172.1|CP090411.1_1_REPEAT14;Parent=SEQF8172.1|CP090411.1_1;Note=GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	binding_site	128352	128381	30	+	.	ID=SEQF8172.1|CP090411.1_1_SPACER14;Parent=SEQF8172.1|CP090411.1_1;Note=AAGTTCACACGAAAAGCCCTATGACAATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	direct_repeat	128382	128417	36	+	.	ID=SEQF8172.1|CP090411.1_1_REPEAT15;Parent=SEQF8172.1|CP090411.1_1;Note=GTTTCAGAAGTATGTTAAATTAATAAGGTTAGGCTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	binding_site	128418	128447	30	+	.	ID=SEQF8172.1|CP090411.1_1_SPACER15;Parent=SEQF8172.1|CP090411.1_1;Note=CATCTGCGTTCAGTTGGTGTCTCAATGCTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	direct_repeat	128448	128483	36	+	.	ID=SEQF8172.1|CP090411.1_1_REPEAT16;Parent=SEQF8172.1|CP090411.1_1;Note=GTTTCAGAAGGATGTTAAATCAATAAGATTAAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF8172.1|CP090411.1	CCTyper	OPERON	121357	129145	7789	+	.	ID=SEQF8172.1|CP090411.1@3;Genome_ID=SEQF8172.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_0_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_9_CAS-I-II-III-IV-V-VI,Csn2_3_CAS-II-A,Csa3_1_CAS-I-II-III-IV-V-VI;Positions=108,109,110,111,112;E-values=3.80e-168,1.10e-95,1.10e-55,2.50e-79,6.60e-05;CoverageSeq=0.801,0.889,0.99,0.987,0.476;CoverageHMM=0.976,0.982,1.0,1.0,0.407;Strand_Interference=1;Strand_Adaptation=1
SEQF8172.1|CP090411.1	CCTyper	CDS	125585	126475	297	+	.	ID=SEQF8172.1|CP090411.1_109_cas;Genome_ID=SEQF8172.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.1e-95;Score=316.8;Coverage_Seq=0.8888888888888888;Coverage_Hmm=0.9818181818181818
SEQF8172.1|CP090411.1	CCTyper	CDS	126453	126758	102	+	.	ID=SEQF8172.1|CP090411.1_110_cas;Genome_ID=SEQF8172.1;Feature_type=CDS;Product=Cas Prediction : Cas2_9_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.1e-55;Score=182.9;Coverage_Seq=0.9901960784313726;Coverage_Hmm=1.0
SEQF8172.1|CP090411.1	CCTyper	CDS	121357	125373	1339	+	.	ID=SEQF8172.1|CP090411.1_108_cas;Genome_ID=SEQF8172.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=+;E-value=3.8e-168;Score=558.2;Coverage_Seq=0.8005974607916355;Coverage_Hmm=0.9759036144578314
SEQF8172.1|CP090411.1	CCTyper	CDS	128837	129145	103	+	.	ID=SEQF8172.1|CP090411.1_112_cas;Genome_ID=SEQF8172.1;Feature_type=CDS;Product=Cas Prediction : Csa3_1_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=6.6e-05;Score=20.1;Coverage_Seq=0.47572815533980584;Coverage_Hmm=0.4067796610169492
SEQF8172.1|CP090411.1	CCTyper	CDS	126755	127426	224	+	.	ID=SEQF8172.1|CP090411.1_111_cas;Genome_ID=SEQF8172.1;Feature_type=CDS;Product=Cas Prediction : Csn2_3_CAS-II-A;coding_strand=+;E-value=2.5e-79;Score=262.8;Coverage_Seq=0.9866071428571429;Coverage_Hmm=1.0