SEQF9001.1|CP053890.1	CCTyper	repeat_region	889305	890924	1620	+	.	ID=SEQF9001.1|CP053890.1_1;Genome_ID=SEQF9001.1;Note=Predictor:CCtyper;Start:889305;End:890924;Consensus_Repeat:GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Number_of_Repeats:25;Repeat_Length:36;Average_Spacer_Length:30;Repeat_Identity:92.7;Spacer_Identity:45.5;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.798;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	889305	889340	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT1;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	889341	889370	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER1;Parent=SEQF9001.1|CP053890.1_1;Note=TTATTTTAATATGTACTTAACTGACTATTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	889371	889406	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT2;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	889407	889436	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER2;Parent=SEQF9001.1|CP053890.1_1;Note=TAAAAAATGTAACAAACCATTGCCCCCCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	889437	889472	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT3;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	889473	889502	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER3;Parent=SEQF9001.1|CP053890.1_1;Note=CTTTTCTATCATACATATCCCATGTATGTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	889503	889538	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT4;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	889539	889568	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER4;Parent=SEQF9001.1|CP053890.1_1;Note=TACTGCTCTTAAGTATGTGTCTGAATCTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	889569	889604	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT5;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	889605	889634	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER5;Parent=SEQF9001.1|CP053890.1_1;Note=TATTATCTTTGTTAAAATGTAATGCTGATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	889635	889670	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT6;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	889671	889700	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER6;Parent=SEQF9001.1|CP053890.1_1;Note=GAACAGAAAAATTTAAAATTGTCTATTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	889701	889736	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT7;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	889737	889766	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER7;Parent=SEQF9001.1|CP053890.1_1;Note=AGTTACTTCTGCTTGGGTTTGATAAGGGTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	889767	889802	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT8;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	889803	889832	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER8;Parent=SEQF9001.1|CP053890.1_1;Note=GAAATGTGGAGTCATTCAGGTTGATGATGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	889833	889868	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT9;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	889869	889898	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER9;Parent=SEQF9001.1|CP053890.1_1;Note=AAAAAATAAATGACTTTAAAGCACTTGGAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	889899	889934	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT10;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	889935	889964	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER10;Parent=SEQF9001.1|CP053890.1_1;Note=TAGTAGCCATTATTATTATGGCTTTTATTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	889965	890000	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT11;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	890001	890030	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER11;Parent=SEQF9001.1|CP053890.1_1;Note=GGATGATTTCGATTATGCGGCGGTGGTTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	890031	890066	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT12;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	890067	890096	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER12;Parent=SEQF9001.1|CP053890.1_1;Note=AAATGTTAATTTCATATCTACATCTTGTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	890097	890132	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT13;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	890133	890162	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER13;Parent=SEQF9001.1|CP053890.1_1;Note=ACATAACGTTCAAAAGTTTCCACTAATAGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	890163	890198	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT14;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	890199	890228	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER14;Parent=SEQF9001.1|CP053890.1_1;Note=TCAAACAACATTGGTGATCTTATTGCGGTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	890229	890264	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT15;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	890265	890294	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER15;Parent=SEQF9001.1|CP053890.1_1;Note=TTATTTAAGACGTGATTTAATGTTAAAACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	890295	890330	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT16;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	890331	890360	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER16;Parent=SEQF9001.1|CP053890.1_1;Note=CAAACTATCTTGATTATAAGTGGACTGATA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	890361	890396	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT17;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	890397	890426	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER17;Parent=SEQF9001.1|CP053890.1_1;Note=ATTTTTACACGAGTGCTAGAAAACGGGGCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	890427	890462	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT18;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	890463	890492	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER18;Parent=SEQF9001.1|CP053890.1_1;Note=ACATTTGTTAAATTTGAACTTACTGGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	890493	890528	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT19;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	890529	890558	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER19;Parent=SEQF9001.1|CP053890.1_1;Note=TCCAAAACAAATACGAATGCTTGAGCGATA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	890559	890594	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT20;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	890595	890624	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER20;Parent=SEQF9001.1|CP053890.1_1;Note=GATTACCTTAGATGATGTTCTAATCGGTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	890625	890660	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT21;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	890661	890690	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER21;Parent=SEQF9001.1|CP053890.1_1;Note=TTAACAGTTTCAAGTCTGTCTTGTTACTTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	890691	890726	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT22;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	890727	890756	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER22;Parent=SEQF9001.1|CP053890.1_1;Note=ACTCTAAATGATAGTTATGAGTTAAATGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	890757	890792	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT23;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	890793	890822	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER23;Parent=SEQF9001.1|CP053890.1_1;Note=CAAATTACAGTTTCGACTGATTATGGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	890823	890858	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT24;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	binding_site	890859	890888	30	+	.	ID=SEQF9001.1|CP053890.1_1_SPACER24;Parent=SEQF9001.1|CP053890.1_1;Note=AAGCTAATTCTCATCTCACCGAGATGGATA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	direct_repeat	890889	890924	36	+	.	ID=SEQF9001.1|CP053890.1_1_REPEAT25;Parent=SEQF9001.1|CP053890.1_1;Note=GTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9001.1|CP053890.1	CCTyper	OPERON	883231	889204	5974	+	.	ID=SEQF9001.1|CP053890.1@19;Genome_ID=SEQF9001.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_1_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_1_CAS-II-A;Positions=833,834,835,836;E-values=0.00e+00,6.00e-108,1.60e-52,1.20e-107;CoverageSeq=0.995,0.928,0.982,0.977;CoverageHMM=0.998,0.996,0.991,0.995;Strand_Interference=1;Strand_Adaptation=1
SEQF9001.1|CP053890.1	CCTyper	CDS	887345	888214	290	+	.	ID=SEQF9001.1|CP053890.1_834_cas;Genome_ID=SEQF9001.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=6e-108;Score=357.1;Coverage_Seq=0.9275862068965517;Coverage_Hmm=0.9963636363636363
SEQF9001.1|CP053890.1	CCTyper	CDS	888211	888552	114	+	.	ID=SEQF9001.1|CP053890.1_835_cas;Genome_ID=SEQF9001.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.6e-52;Score=173.6;Coverage_Seq=0.9824561403508771;Coverage_Hmm=0.9913793103448276
SEQF9001.1|CP053890.1	CCTyper	CDS	883231	887343	1371	+	.	ID=SEQF9001.1|CP053890.1_833_cas;Genome_ID=SEQF9001.1;Feature_type=CDS;Product=Cas Prediction : Cas9_1_II;coding_strand=+;E-value=0.0;Score=1241.8;Coverage_Seq=0.9948942377826404;Coverage_Hmm=0.9982142857142857
SEQF9001.1|CP053890.1	CCTyper	CDS	888539	889204	222	+	.	ID=SEQF9001.1|CP053890.1_836_cas;Genome_ID=SEQF9001.1;Feature_type=CDS;Product=Cas Prediction : Csn2_1_CAS-II-A;coding_strand=+;E-value=1.2e-107;Score=355.4;Coverage_Seq=0.9774774774774775;Coverage_Hmm=0.9954128440366973