SEQF9004.1|CP025028.1	CCTyper	repeat_region	513647	514339	693	+	.	ID=SEQF9004.1|CP025028.1_1;Genome_ID=SEQF9004.1;Note=Predictor:CCtyper;Start:513647;End:514339;Consensus_Repeat:GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT;Number_of_Repeats:11;Repeat_Length:32;Average_Spacer_Length:34.1;Repeat_Identity:92.8;Spacer_Identity:41.9;Spacer_Length_Sem:0.3;Trusted:True;Cas_Type_Prediction: I-C;Cas_Subtype_Prediction:I-C;Subtype_Probability:0.945;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	direct_repeat	513647	513678	32	+	.	ID=SEQF9004.1|CP025028.1_1_REPEAT1;Parent=SEQF9004.1|CP025028.1_1;Note=GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	binding_site	513679	513713	35	+	.	ID=SEQF9004.1|CP025028.1_1_SPACER1;Parent=SEQF9004.1|CP025028.1_1;Note=AGAAGATTATTACGTTGAGTCCAAGCCTGACGTCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	direct_repeat	513714	513745	32	+	.	ID=SEQF9004.1|CP025028.1_1_REPEAT2;Parent=SEQF9004.1|CP025028.1_1;Note=GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	binding_site	513746	513779	34	+	.	ID=SEQF9004.1|CP025028.1_1_SPACER2;Parent=SEQF9004.1|CP025028.1_1;Note=TAACTTTGTTAAGTAGCTTTGTTTGGTTTCTTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	direct_repeat	513780	513811	32	+	.	ID=SEQF9004.1|CP025028.1_1_REPEAT3;Parent=SEQF9004.1|CP025028.1_1;Note=GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	binding_site	513812	513845	34	+	.	ID=SEQF9004.1|CP025028.1_1_SPACER3;Parent=SEQF9004.1|CP025028.1_1;Note=TAAGTCTCGCTGTTACGCTTGACGCAGAGCAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	direct_repeat	513846	513877	32	+	.	ID=SEQF9004.1|CP025028.1_1_REPEAT4;Parent=SEQF9004.1|CP025028.1_1;Note=GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	binding_site	513878	513911	34	+	.	ID=SEQF9004.1|CP025028.1_1_SPACER4;Parent=SEQF9004.1|CP025028.1_1;Note=TATTTTATATTAAAAATAAGACTACCATAATTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	direct_repeat	513912	513943	32	+	.	ID=SEQF9004.1|CP025028.1_1_REPEAT5;Parent=SEQF9004.1|CP025028.1_1;Note=GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	binding_site	513944	513977	34	+	.	ID=SEQF9004.1|CP025028.1_1_SPACER5;Parent=SEQF9004.1|CP025028.1_1;Note=AGGCAAAAGTCAACGAGCTACTCAAACAGCCAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	direct_repeat	513978	514009	32	+	.	ID=SEQF9004.1|CP025028.1_1_REPEAT6;Parent=SEQF9004.1|CP025028.1_1;Note=GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	binding_site	514010	514044	35	+	.	ID=SEQF9004.1|CP025028.1_1_SPACER6;Parent=SEQF9004.1|CP025028.1_1;Note=AGGTGGTATGTTTAAAATTTTTGCATCTTCAATTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	direct_repeat	514045	514076	32	+	.	ID=SEQF9004.1|CP025028.1_1_REPEAT7;Parent=SEQF9004.1|CP025028.1_1;Note=GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	binding_site	514077	514110	34	+	.	ID=SEQF9004.1|CP025028.1_1_SPACER7;Parent=SEQF9004.1|CP025028.1_1;Note=GTCGTAAAGACGTAGCATATCACTAATTAGATCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	direct_repeat	514111	514142	32	+	.	ID=SEQF9004.1|CP025028.1_1_REPEAT8;Parent=SEQF9004.1|CP025028.1_1;Note=GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	binding_site	514143	514177	35	+	.	ID=SEQF9004.1|CP025028.1_1_SPACER8;Parent=SEQF9004.1|CP025028.1_1;Note=TAGCTGATAGCCTGCAATATACAACCATCCGTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	direct_repeat	514178	514209	32	+	.	ID=SEQF9004.1|CP025028.1_1_REPEAT9;Parent=SEQF9004.1|CP025028.1_1;Note=GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	binding_site	514210	514243	34	+	.	ID=SEQF9004.1|CP025028.1_1_SPACER9;Parent=SEQF9004.1|CP025028.1_1;Note=ATCATATCTCTATAATTTCCTTTCATATCAACGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	direct_repeat	514244	514275	32	+	.	ID=SEQF9004.1|CP025028.1_1_REPEAT10;Parent=SEQF9004.1|CP025028.1_1;Note=GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	binding_site	514276	514307	32	+	.	ID=SEQF9004.1|CP025028.1_1_SPACER10;Parent=SEQF9004.1|CP025028.1_1;Note=TAATAATGATTATTTTTTTATTAATTCATTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	direct_repeat	514308	514339	32	+	.	ID=SEQF9004.1|CP025028.1_1_REPEAT11;Parent=SEQF9004.1|CP025028.1_1;Note=CATCGCCCCTTTGCGGGTGTGTAGTTTCAACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	repeat_region	915859	916554	696	+	.	ID=SEQF9004.1|CP025028.1_2;Genome_ID=SEQF9004.1;Note=Predictor:CCtyper;Start:915859;End:916554;Consensus_Repeat:GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Number_of_Repeats:11;Repeat_Length:36;Average_Spacer_Length:30.0;Repeat_Identity:100.0;Spacer_Identity:42.6;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.798;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	direct_repeat	915859	915894	36	+	.	ID=SEQF9004.1|CP025028.1_2_REPEAT1;Parent=SEQF9004.1|CP025028.1_2;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	binding_site	915895	915924	30	+	.	ID=SEQF9004.1|CP025028.1_2_SPACER1;Parent=SEQF9004.1|CP025028.1_2;Note=TTCTTGACCACTAGCATCACCTACCAATCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	direct_repeat	915925	915960	36	+	.	ID=SEQF9004.1|CP025028.1_2_REPEAT2;Parent=SEQF9004.1|CP025028.1_2;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	binding_site	915961	915990	30	+	.	ID=SEQF9004.1|CP025028.1_2_SPACER2;Parent=SEQF9004.1|CP025028.1_2;Note=CTTAATAGTAGATGATGTCTGTGCTCAACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	direct_repeat	915991	916026	36	+	.	ID=SEQF9004.1|CP025028.1_2_REPEAT3;Parent=SEQF9004.1|CP025028.1_2;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	binding_site	916027	916056	30	+	.	ID=SEQF9004.1|CP025028.1_2_SPACER3;Parent=SEQF9004.1|CP025028.1_2;Note=CAATTATAACAACAATAAAGTATGTAATTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	direct_repeat	916057	916092	36	+	.	ID=SEQF9004.1|CP025028.1_2_REPEAT4;Parent=SEQF9004.1|CP025028.1_2;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	binding_site	916093	916122	30	+	.	ID=SEQF9004.1|CP025028.1_2_SPACER4;Parent=SEQF9004.1|CP025028.1_2;Note=GCGCTTCTGAGTGTTGATTCATACTCTTTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	direct_repeat	916123	916158	36	+	.	ID=SEQF9004.1|CP025028.1_2_REPEAT5;Parent=SEQF9004.1|CP025028.1_2;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	binding_site	916159	916188	30	+	.	ID=SEQF9004.1|CP025028.1_2_SPACER5;Parent=SEQF9004.1|CP025028.1_2;Note=CTAATCACGTTCGATTCGTGATGGGTCTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	direct_repeat	916189	916224	36	+	.	ID=SEQF9004.1|CP025028.1_2_REPEAT6;Parent=SEQF9004.1|CP025028.1_2;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	binding_site	916225	916254	30	+	.	ID=SEQF9004.1|CP025028.1_2_SPACER6;Parent=SEQF9004.1|CP025028.1_2;Note=GTCAAAAGAAAAAGATTAGTCATCACACTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	direct_repeat	916255	916290	36	+	.	ID=SEQF9004.1|CP025028.1_2_REPEAT7;Parent=SEQF9004.1|CP025028.1_2;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	binding_site	916291	916320	30	+	.	ID=SEQF9004.1|CP025028.1_2_SPACER7;Parent=SEQF9004.1|CP025028.1_2;Note=ACCGTCGATGTTGGTTCTTTGTGTTGGGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	direct_repeat	916321	916356	36	+	.	ID=SEQF9004.1|CP025028.1_2_REPEAT8;Parent=SEQF9004.1|CP025028.1_2;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	binding_site	916357	916386	30	+	.	ID=SEQF9004.1|CP025028.1_2_SPACER8;Parent=SEQF9004.1|CP025028.1_2;Note=AATATTACATTGATAATGTAGTAGAATTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	direct_repeat	916387	916422	36	+	.	ID=SEQF9004.1|CP025028.1_2_REPEAT9;Parent=SEQF9004.1|CP025028.1_2;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	binding_site	916423	916452	30	+	.	ID=SEQF9004.1|CP025028.1_2_SPACER9;Parent=SEQF9004.1|CP025028.1_2;Note=AAATTCTTTGCTTGATTAATTAATTCGTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	direct_repeat	916453	916488	36	+	.	ID=SEQF9004.1|CP025028.1_2_REPEAT10;Parent=SEQF9004.1|CP025028.1_2;Note=GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	binding_site	916489	916518	30	+	.	ID=SEQF9004.1|CP025028.1_2_SPACER10;Parent=SEQF9004.1|CP025028.1_2;Note=TCCTCTTTCTATGTTTCAATTGCCAATTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	direct_repeat	916519	916554	36	+	.	ID=SEQF9004.1|CP025028.1_2_REPEAT11;Parent=SEQF9004.1|CP025028.1_2;Note=GTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9004.1|CP025028.1	CCTyper	OPERON	505448	513500	8053	+	.	ID=SEQF9004.1|CP025028.1@13;Genome_ID=SEQF9004.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-C;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=I-C;Best_score=21.0;Genes=Cas3_1_CAS-I,Cas5_0_IC,Cas8c_0_IC,Cas7_2_CAS-I-C,Cas4_0_I-II,Cas1_0_IC,Cas2_4_CAS-I-II-III-IV-V-VI;Positions=505,506,507,508,509,510,511;E-values=4.00e-147,5.30e-98,7.00e-170,2.20e-145,1.70e-31,1.50e-136,3.40e-30;CoverageSeq=0.919,0.831,0.979,0.993,0.844,0.988,0.929;CoverageHMM=0.995,1.0,0.998,0.989,0.983,0.997,0.978;Strand_Interference=1;Strand_Adaptation=1
SEQF9004.1|CP025028.1	CCTyper	OPERON	909785	915758	5974	+	.	ID=SEQF9004.1|CP025028.1@20;Genome_ID=SEQF9004.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_1_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_1_CAS-II-A;Positions=886,887,888,889;E-values=0.00e+00,6.20e-108,1.60e-52,1.30e-106;CoverageSeq=0.995,0.928,0.982,0.977;CoverageHMM=0.998,0.996,0.991,0.995;Strand_Interference=1;Strand_Adaptation=1
SEQF9004.1|CP025028.1	CCTyper	CDS	512171	513196	342	+	.	ID=SEQF9004.1|CP025028.1_510_cas;Genome_ID=SEQF9004.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IC;coding_strand=+;E-value=1.5e-136;Score=452.0;Coverage_Seq=0.9883040935672515;Coverage_Hmm=0.9970588235294118
SEQF9004.1|CP025028.1	CCTyper	CDS	913899	914768	290	+	.	ID=SEQF9004.1|CP025028.1_887_cas;Genome_ID=SEQF9004.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=6.2e-108;Score=357.1;Coverage_Seq=0.9275862068965517;Coverage_Hmm=0.9963636363636363
SEQF9004.1|CP025028.1	CCTyper	CDS	513207	513500	98	+	.	ID=SEQF9004.1|CP025028.1_511_cas;Genome_ID=SEQF9004.1;Feature_type=CDS;Product=Cas Prediction : Cas2_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=3.4e-30;Score=101.2;Coverage_Seq=0.9285714285714286;Coverage_Hmm=0.9775280898876404
SEQF9004.1|CP025028.1	CCTyper	CDS	914765	915106	114	+	.	ID=SEQF9004.1|CP025028.1_888_cas;Genome_ID=SEQF9004.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.6e-52;Score=173.6;Coverage_Seq=0.9824561403508771;Coverage_Hmm=0.9913793103448276
SEQF9004.1|CP025028.1	CCTyper	CDS	505448	507892	815	+	.	ID=SEQF9004.1|CP025028.1_505_cas;Genome_ID=SEQF9004.1;Feature_type=CDS;Product=Cas Prediction : Cas3_1_CAS-I;coding_strand=+;E-value=4e-147;Score=488.5;Coverage_Seq=0.9190184049079755;Coverage_Hmm=0.9946308724832215
SEQF9004.1|CP025028.1	CCTyper	CDS	511503	512174	224	+	.	ID=SEQF9004.1|CP025028.1_509_cas;Genome_ID=SEQF9004.1;Feature_type=CDS;Product=Cas Prediction : Cas4_0_I-II;coding_strand=+;E-value=1.6999999999999998e-31;Score=106.4;Coverage_Seq=0.84375;Coverage_Hmm=0.9833333333333333
SEQF9004.1|CP025028.1	CCTyper	CDS	508025	508753	243	+	.	ID=SEQF9004.1|CP025028.1_506_cas;Genome_ID=SEQF9004.1;Feature_type=CDS;Product=Cas Prediction : Cas5_0_IC;coding_strand=+;E-value=5.3e-98;Score=324.0;Coverage_Seq=0.831275720164609;Coverage_Hmm=1.0
SEQF9004.1|CP025028.1	CCTyper	CDS	510653	511501	283	+	.	ID=SEQF9004.1|CP025028.1_508_cas;Genome_ID=SEQF9004.1;Feature_type=CDS;Product=Cas Prediction : Cas7_2_CAS-I-C;coding_strand=+;E-value=2.2e-145;Score=480.2;Coverage_Seq=0.9929328621908127;Coverage_Hmm=0.9893992932862191
SEQF9004.1|CP025028.1	CCTyper	CDS	508753	510648	632	+	.	ID=SEQF9004.1|CP025028.1_507_cas;Genome_ID=SEQF9004.1;Feature_type=CDS;Product=Cas Prediction : Cas8c_0_IC;coding_strand=+;E-value=7e-170;Score=563.3;Coverage_Seq=0.9794303797468354;Coverage_Hmm=0.9982993197278912
SEQF9004.1|CP025028.1	CCTyper	CDS	909785	913897	1371	+	.	ID=SEQF9004.1|CP025028.1_886_cas;Genome_ID=SEQF9004.1;Feature_type=CDS;Product=Cas Prediction : Cas9_1_II;coding_strand=+;E-value=0.0;Score=1241.8;Coverage_Seq=0.9948942377826404;Coverage_Hmm=0.9982142857142857
SEQF9004.1|CP025028.1	CCTyper	CDS	915093	915758	222	+	.	ID=SEQF9004.1|CP025028.1_889_cas;Genome_ID=SEQF9004.1;Feature_type=CDS;Product=Cas Prediction : Csn2_1_CAS-II-A;coding_strand=+;E-value=1.3e-106;Score=352.1;Coverage_Seq=0.9774774774774775;Coverage_Hmm=0.9954128440366973