SEQF9237.1|SHNA01000023.1	CCTyper	repeat_region	3710	4339	630	+	.	ID=SEQF9237.1|SHNA01000023.1_1;Genome_ID=SEQF9237.1;Note=Predictor:CCtyper;Start:3710;End:4339;Consensus_Repeat:GTACTCGGAACTACTGATCTGACACTCATCCAAGAC;Number_of_Repeats:10;Repeat_Length:36;Average_Spacer_Length:30;Repeat_Identity:96.0;Spacer_Identity:43.4;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.968;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9237.1|SHNA01000023.1	CCTyper	direct_repeat	3710	3745	36	+	.	ID=SEQF9237.1|SHNA01000023.1_1_REPEAT1;Parent=SEQF9237.1|SHNA01000023.1_1;Note=AACTCTAAAACTACTGATCTGACACTCATCCAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9237.1|SHNA01000023.1	CCTyper	binding_site	3746	3775	30	+	.	ID=SEQF9237.1|SHNA01000023.1_1_SPACER1;Parent=SEQF9237.1|SHNA01000023.1_1;Note=CGTGAAAGGAGGTGATTCAAAATGACTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9237.1|SHNA01000023.1	CCTyper	direct_repeat	3776	3811	36	+	.	ID=SEQF9237.1|SHNA01000023.1_1_REPEAT2;Parent=SEQF9237.1|SHNA01000023.1_1;Note=GTACTCGGAACTACTGATCTGACACTCATCCAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9237.1|SHNA01000023.1	CCTyper	binding_site	3812	3841	30	+	.	ID=SEQF9237.1|SHNA01000023.1_1_SPACER2;Parent=SEQF9237.1|SHNA01000023.1_1;Note=CAATGTTTGTCCAACGTAGATGACGTTAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9237.1|SHNA01000023.1	CCTyper	direct_repeat	3842	3877	36	+	.	ID=SEQF9237.1|SHNA01000023.1_1_REPEAT3;Parent=SEQF9237.1|SHNA01000023.1_1;Note=GTACTCGGAACTACTGATCTGACACTCATCCAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9237.1|SHNA01000023.1	CCTyper	binding_site	3878	3907	30	+	.	ID=SEQF9237.1|SHNA01000023.1_1_SPACER3;Parent=SEQF9237.1|SHNA01000023.1_1;Note=ACGTGTAAGAGGAGCCAAACCCATTTTGGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9237.1|SHNA01000023.1	CCTyper	direct_repeat	3908	3943	36	+	.	ID=SEQF9237.1|SHNA01000023.1_1_REPEAT4;Parent=SEQF9237.1|SHNA01000023.1_1;Note=GTACTCGGAACTACTGATCTGACACTCATCCAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9237.1|SHNA01000023.1	CCTyper	binding_site	3944	3973	30	+	.	ID=SEQF9237.1|SHNA01000023.1_1_SPACER4;Parent=SEQF9237.1|SHNA01000023.1_1;Note=AACCCTAGCTACTTATATAACGCCTTAGTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9237.1|SHNA01000023.1	CCTyper	direct_repeat	3974	4009	36	+	.	ID=SEQF9237.1|SHNA01000023.1_1_REPEAT5;Parent=SEQF9237.1|SHNA01000023.1_1;Note=GTACTCGGAACTACTGATCTGACACTCATCCAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9237.1|SHNA01000023.1	CCTyper	binding_site	4010	4039	30	+	.	ID=SEQF9237.1|SHNA01000023.1_1_SPACER5;Parent=SEQF9237.1|SHNA01000023.1_1;Note=GTCGGCCTGGTTGATGCTTTCAACGATTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9237.1|SHNA01000023.1	CCTyper	direct_repeat	4040	4075	36	+	.	ID=SEQF9237.1|SHNA01000023.1_1_REPEAT6;Parent=SEQF9237.1|SHNA01000023.1_1;Note=GTACTCGGAACTACTGATCTGACACTCATCCAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9237.1|SHNA01000023.1	CCTyper	binding_site	4076	4105	30	+	.	ID=SEQF9237.1|SHNA01000023.1_1_SPACER6;Parent=SEQF9237.1|SHNA01000023.1_1;Note=TGTTACCGTGCCGTCATCGCTGGTGGCCTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9237.1|SHNA01000023.1	CCTyper	direct_repeat	4106	4141	36	+	.	ID=SEQF9237.1|SHNA01000023.1_1_REPEAT7;Parent=SEQF9237.1|SHNA01000023.1_1;Note=GTACTCGGAACTACTGATCTGACACTCATCCAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9237.1|SHNA01000023.1	CCTyper	binding_site	4142	4171	30	+	.	ID=SEQF9237.1|SHNA01000023.1_1_SPACER7;Parent=SEQF9237.1|SHNA01000023.1_1;Note=GCATGTTCTGCAAGCAATGCACAGTCATGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9237.1|SHNA01000023.1	CCTyper	direct_repeat	4172	4207	36	+	.	ID=SEQF9237.1|SHNA01000023.1_1_REPEAT8;Parent=SEQF9237.1|SHNA01000023.1_1;Note=GTACTCGGAACTACTGATCTGACACTCATCCAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9237.1|SHNA01000023.1	CCTyper	binding_site	4208	4237	30	+	.	ID=SEQF9237.1|SHNA01000023.1_1_SPACER8;Parent=SEQF9237.1|SHNA01000023.1_1;Note=CAGTTTGATCTAAACGTTGAATTGTTTAAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9237.1|SHNA01000023.1	CCTyper	direct_repeat	4238	4273	36	+	.	ID=SEQF9237.1|SHNA01000023.1_1_REPEAT9;Parent=SEQF9237.1|SHNA01000023.1_1;Note=GTACTCGGAACTACTGATCTGACACTCATCCAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9237.1|SHNA01000023.1	CCTyper	binding_site	4274	4303	30	+	.	ID=SEQF9237.1|SHNA01000023.1_1_SPACER9;Parent=SEQF9237.1|SHNA01000023.1_1;Note=GCAAGTCTACGGTGTCATTAGCGAACGTGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9237.1|SHNA01000023.1	CCTyper	direct_repeat	4304	4339	36	+	.	ID=SEQF9237.1|SHNA01000023.1_1_REPEAT10;Parent=SEQF9237.1|SHNA01000023.1_1;Note=GTACTCGGAACTACTGATCTGACACTCATCCAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9237.1|SHNA01000023.1	CCTyper	OPERON	4368	10568	6201	-	.	ID=SEQF9237.1|SHNA01000023.1@1;Genome_ID=SEQF9237.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Csn2_3_CAS-II-A,Cas2_9_CAS-I-II-III-IV-V-VI,Cas1_4_CAS-I-II-III-IV-V-VI,Cas9_0_II;Positions=6,7,8,9;E-values=7.80e-78,5.40e-53,1.00e-78,1.10e-182;CoverageSeq=0.982,0.944,0.887,0.756;CoverageHMM=1.0,1.0,0.996,0.977;Strand_Interference=-1;Strand_Adaptation=-1
SEQF9237.1|SHNA01000023.1	CCTyper	CDS	5319	6224	302	-	.	ID=SEQF9237.1|SHNA01000023.1_8_cas;Genome_ID=SEQF9237.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1e-78;Score=261.4;Coverage_Seq=0.8874172185430463;Coverage_Hmm=0.9963636363636363
SEQF9237.1|SHNA01000023.1	CCTyper	CDS	5036	5356	107	-	.	ID=SEQF9237.1|SHNA01000023.1_7_cas;Genome_ID=SEQF9237.1;Feature_type=CDS;Product=Cas Prediction : Cas2_9_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=5.4e-53;Score=174.5;Coverage_Seq=0.9439252336448598;Coverage_Hmm=1.0
SEQF9237.1|SHNA01000023.1	CCTyper	CDS	6432	10568	1379	-	.	ID=SEQF9237.1|SHNA01000023.1_9_cas;Genome_ID=SEQF9237.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=-;E-value=1.1e-182;Score=606.5;Coverage_Seq=0.7563451776649747;Coverage_Hmm=0.9771084337349397
SEQF9237.1|SHNA01000023.1	CCTyper	CDS	4368	5039	224	-	.	ID=SEQF9237.1|SHNA01000023.1_6_cas;Genome_ID=SEQF9237.1;Feature_type=CDS;Product=Cas Prediction : Csn2_3_CAS-II-A;coding_strand=-;E-value=7.8e-78;Score=258.2;Coverage_Seq=0.9821428571428571;Coverage_Hmm=1.0