SEQF9448.1|QYAA01000011.1	CCTyper	repeat_region	136722	137372	651	+	.	ID=SEQF9448.1|QYAA01000011.1_1;Genome_ID=SEQF9448.1;Note=Predictor:CCtyper;Start:136722;End:137372;Consensus_Repeat:GTTAAATTAAATAATCCCCTGATGGGGACGG;Number_of_Repeats:9;Repeat_Length:31;Average_Spacer_Length:46.5;Repeat_Identity:91.0;Spacer_Identity:44.2;Spacer_Length_Sem:0.8;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.964;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	direct_repeat	136722	136752	31	+	.	ID=SEQF9448.1|QYAA01000011.1_1_REPEAT1;Parent=SEQF9448.1|QYAA01000011.1_1;Note=GTTAAATTAAATAATCCCCTGATGGGGACGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	binding_site	136753	136800	48	+	.	ID=SEQF9448.1|QYAA01000011.1_1_SPACER1;Parent=SEQF9448.1|QYAA01000011.1_1;Note=GAACTTTACCTCTGTGCTTGTAACCAATAGGCGGCTCACCATTGCCGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	direct_repeat	136801	136831	31	+	.	ID=SEQF9448.1|QYAA01000011.1_1_REPEAT2;Parent=SEQF9448.1|QYAA01000011.1_1;Note=GTTAAATTAAATAATCCCCTGATGGGGACGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	binding_site	136832	136873	42	+	.	ID=SEQF9448.1|QYAA01000011.1_1_SPACER2;Parent=SEQF9448.1|QYAA01000011.1_1;Note=GAACTAGTTAGTGTGTGTTGTATAGGGAAAGTATACGGTTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	direct_repeat	136874	136904	31	+	.	ID=SEQF9448.1|QYAA01000011.1_1_REPEAT3;Parent=SEQF9448.1|QYAA01000011.1_1;Note=GTTAAATTAAATAATCCCCTGATGGGGACGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	binding_site	136905	136950	46	+	.	ID=SEQF9448.1|QYAA01000011.1_1_SPACER3;Parent=SEQF9448.1|QYAA01000011.1_1;Note=GAACCCTACAAACTCTGAAAAGGAGCTATTAAAAGAGCAAAATAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	direct_repeat	136951	136981	31	+	.	ID=SEQF9448.1|QYAA01000011.1_1_REPEAT4;Parent=SEQF9448.1|QYAA01000011.1_1;Note=GTTAAATTAAATAATCCCCTGATGGGGACGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	binding_site	136982	137029	48	+	.	ID=SEQF9448.1|QYAA01000011.1_1_SPACER4;Parent=SEQF9448.1|QYAA01000011.1_1;Note=AAACCCCTTTGCTGATTTAACAACATCAGTTAAAGGCACTTGCATAGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	direct_repeat	137030	137060	31	+	.	ID=SEQF9448.1|QYAA01000011.1_1_REPEAT5;Parent=SEQF9448.1|QYAA01000011.1_1;Note=GTTAAATTAAATAATCCCCTGATGGGGACGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	binding_site	137061	137109	49	+	.	ID=SEQF9448.1|QYAA01000011.1_1_SPACER5;Parent=SEQF9448.1|QYAA01000011.1_1;Note=AAACCGACCTGCGCATATACACCAGAATAGATTTCTTCTTCAATATCGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	direct_repeat	137110	137140	31	+	.	ID=SEQF9448.1|QYAA01000011.1_1_REPEAT6;Parent=SEQF9448.1|QYAA01000011.1_1;Note=GTTAAATTAAATAATCCCCTGATGGGGACGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	binding_site	137141	137185	45	+	.	ID=SEQF9448.1|QYAA01000011.1_1_SPACER6;Parent=SEQF9448.1|QYAA01000011.1_1;Note=AAACCATTCATCAGGAATGCAATATTCTTTCTTTGGGCATTTGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	direct_repeat	137186	137216	31	+	.	ID=SEQF9448.1|QYAA01000011.1_1_REPEAT7;Parent=SEQF9448.1|QYAA01000011.1_1;Note=GTTAAATTAAATGATCCCCTAATGGGGACGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	binding_site	137217	137263	47	+	.	ID=SEQF9448.1|QYAA01000011.1_1_SPACER7;Parent=SEQF9448.1|QYAA01000011.1_1;Note=AAACCGTCATCAAACTCATTTGCCATTGTTTCTGCGGTATTAATCGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	direct_repeat	137264	137294	31	+	.	ID=SEQF9448.1|QYAA01000011.1_1_REPEAT8;Parent=SEQF9448.1|QYAA01000011.1_1;Note=ATTAAATTAAATAATCCCCTGATGGGGACGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	binding_site	137295	137341	47	+	.	ID=SEQF9448.1|QYAA01000011.1_1_SPACER8;Parent=SEQF9448.1|QYAA01000011.1_1;Note=AAACAATTTATTGTTTTCTTTTCTTAGATTTTCCACCTCGCTTTGTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	direct_repeat	137342	137372	31	+	.	ID=SEQF9448.1|QYAA01000011.1_1_REPEAT9;Parent=SEQF9448.1|QYAA01000011.1_1;Note=GTTAAATTAAATAATCCCCTTACGGGGCCGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	repeat_region	147247	147966	720	+	.	ID=SEQF9448.1|QYAA01000011.1_2;Genome_ID=SEQF9448.1;Note=Predictor:CCtyper;Start:147247;End:147966;Consensus_Repeat:GTTAAATTAAATAATCCCCATTAGGGGACGGAAAC;Number_of_Repeats:10;Repeat_Length:35;Average_Spacer_Length:41.1;Repeat_Identity:86.0;Spacer_Identity:44.8;Spacer_Length_Sem:0.6;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.996;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	direct_repeat	147247	147281	35	+	.	ID=SEQF9448.1|QYAA01000011.1_2_REPEAT1;Parent=SEQF9448.1|QYAA01000011.1_2;Note=GTTAAATTAAATAATCCCCATTAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	binding_site	147282	147322	41	+	.	ID=SEQF9448.1|QYAA01000011.1_2_SPACER1;Parent=SEQF9448.1|QYAA01000011.1_2;Note=AATTGAAAGTCACAAACCAATCGTCATTTATGGTGATTATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	direct_repeat	147323	147357	35	+	.	ID=SEQF9448.1|QYAA01000011.1_2_REPEAT2;Parent=SEQF9448.1|QYAA01000011.1_2;Note=GTTAAATTAAATAATCCCCATTAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	binding_site	147358	147397	40	+	.	ID=SEQF9448.1|QYAA01000011.1_2_SPACER2;Parent=SEQF9448.1|QYAA01000011.1_2;Note=AATACAGAATATTACGTATATGAAAATCACGCCATGTATA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	direct_repeat	147398	147432	35	+	.	ID=SEQF9448.1|QYAA01000011.1_2_REPEAT3;Parent=SEQF9448.1|QYAA01000011.1_2;Note=GTTAAATTAAATAATCCCCATTAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	binding_site	147433	147473	41	+	.	ID=SEQF9448.1|QYAA01000011.1_2_SPACER3;Parent=SEQF9448.1|QYAA01000011.1_2;Note=ATTCATCTTCAACACCAGCTAATGCCTCAACCTCTCTTTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	direct_repeat	147474	147508	35	+	.	ID=SEQF9448.1|QYAA01000011.1_2_REPEAT4;Parent=SEQF9448.1|QYAA01000011.1_2;Note=GTTAAATTAAATAATCCCCATTAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	binding_site	147509	147547	39	+	.	ID=SEQF9448.1|QYAA01000011.1_2_SPACER4;Parent=SEQF9448.1|QYAA01000011.1_2;Note=CAGTGAAAGCTACTACAGTATTGATTTCTTTTGCGTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	direct_repeat	147548	147582	35	+	.	ID=SEQF9448.1|QYAA01000011.1_2_REPEAT5;Parent=SEQF9448.1|QYAA01000011.1_2;Note=GTTAAATTAAATAATCCCCATTAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	binding_site	147583	147626	44	+	.	ID=SEQF9448.1|QYAA01000011.1_2_SPACER5;Parent=SEQF9448.1|QYAA01000011.1_2;Note=TTAAATCCTCTTCAGAATAGTAATCTAATCTATTCCTCATACAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	direct_repeat	147627	147661	35	+	.	ID=SEQF9448.1|QYAA01000011.1_2_REPEAT6;Parent=SEQF9448.1|QYAA01000011.1_2;Note=GTTAAATTAAATAATCCCCTGATGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	binding_site	147662	147703	42	+	.	ID=SEQF9448.1|QYAA01000011.1_2_SPACER6;Parent=SEQF9448.1|QYAA01000011.1_2;Note=TCAAAACCTATACTAATCCTATAACATTGTGTTTTATAGATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	direct_repeat	147704	147738	35	+	.	ID=SEQF9448.1|QYAA01000011.1_2_REPEAT7;Parent=SEQF9448.1|QYAA01000011.1_2;Note=GTTAAATTAAATAATCCCCTGATGGGGACGAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	binding_site	147739	147781	43	+	.	ID=SEQF9448.1|QYAA01000011.1_2_SPACER7;Parent=SEQF9448.1|QYAA01000011.1_2;Note=AGTCTTTTTACTTCACGTAGGATGCCAGGTTCCCTAAGATTGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	direct_repeat	147782	147816	35	+	.	ID=SEQF9448.1|QYAA01000011.1_2_REPEAT8;Parent=SEQF9448.1|QYAA01000011.1_2;Note=GTTAAACTAAATAATCCCCTAATGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	binding_site	147817	147855	39	+	.	ID=SEQF9448.1|QYAA01000011.1_2_SPACER8;Parent=SEQF9448.1|QYAA01000011.1_2;Note=TCATATTCCTTAGCCTCACGTTTGGTCTTAAAGCTTTGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	direct_repeat	147856	147890	35	+	.	ID=SEQF9448.1|QYAA01000011.1_2_REPEAT9;Parent=SEQF9448.1|QYAA01000011.1_2;Note=GTTAAATTAAATAATCCTCATTAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	binding_site	147891	147931	41	+	.	ID=SEQF9448.1|QYAA01000011.1_2_SPACER9;Parent=SEQF9448.1|QYAA01000011.1_2;Note=TGCTGCTTGTAGAGAATCCATTGATCACCGACCTTACGTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	direct_repeat	147932	147966	35	+	.	ID=SEQF9448.1|QYAA01000011.1_2_REPEAT10;Parent=SEQF9448.1|QYAA01000011.1_2;Note=GTTAAATTAAATAATCCCCAATGGGGTCAAAAAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9448.1|QYAA01000011.1	CCTyper	OPERON	137548	146929	9382	+	.	ID=SEQF9448.1|QYAA01000011.1@1;Genome_ID=SEQF9448.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=18.0;Genes=Cas10_1_CAS-III,Csm2gr11_7_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm5gr7_1_CAS-III-A-III-D,Cas6_15_CAS-I-II-III-IV-V-VI,Csm6_7_CAS-III,Cas1_0_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI;Positions=85,86,87,88,89,90,91,92,93;E-values=9.30e-217,1.00e-16,4.00e-67,4.80e-31,3.60e-18,3.70e-16,3.50e-49,3.70e-91,9.10e-23;CoverageSeq=0.819,0.778,0.851,0.961,0.964,0.447,0.836,0.949,0.717;CoverageHMM=1.0,0.955,0.94,0.952,0.978,1.0,0.984,0.991,0.835;Strand_Interference=1;Strand_Adaptation=NA
SEQF9448.1|QYAA01000011.1	CCTyper	CDS	137548	140097	850	+	.	ID=SEQF9448.1|QYAA01000011.1_85_cas;Genome_ID=SEQF9448.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=+;E-value=9.3e-217;Score=718.4;Coverage_Seq=0.8188235294117647;Coverage_Hmm=1.0
SEQF9448.1|QYAA01000011.1	CCTyper	CDS	145657	146652	332	+	.	ID=SEQF9448.1|QYAA01000011.1_92_cas;Genome_ID=SEQF9448.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=3.6999999999999996e-91;Score=302.3;Coverage_Seq=0.9487951807228916;Coverage_Hmm=0.9905362776025236
SEQF9448.1|QYAA01000011.1	CCTyper	CDS	146654	146929	92	+	.	ID=SEQF9448.1|QYAA01000011.1_93_cas;Genome_ID=SEQF9448.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=9.1e-23;Score=77.1;Coverage_Seq=0.717391304347826;Coverage_Hmm=0.8354430379746836
SEQF9448.1|QYAA01000011.1	CCTyper	CDS	143473	144243	257	+	.	ID=SEQF9448.1|QYAA01000011.1_90_cas;Genome_ID=SEQF9448.1;Feature_type=CDS;Product=Cas Prediction : Cas6_15_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=3.7e-16;Score=56.6;Coverage_Seq=0.4474708171206226;Coverage_Hmm=1.0
SEQF9448.1|QYAA01000011.1	CCTyper	CDS	140108	140608	167	+	.	ID=SEQF9448.1|QYAA01000011.1_86_cas;Genome_ID=SEQF9448.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=+;E-value=1e-16;Score=58.7;Coverage_Seq=0.7784431137724551;Coverage_Hmm=0.9545454545454546
SEQF9448.1|QYAA01000011.1	CCTyper	CDS	140624	141307	228	+	.	ID=SEQF9448.1|QYAA01000011.1_87_cas;Genome_ID=SEQF9448.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=+;E-value=4e-67;Score=223.0;Coverage_Seq=0.8508771929824561;Coverage_Hmm=0.9395348837209302
SEQF9448.1|QYAA01000011.1	CCTyper	CDS	141317	142315	333	+	.	ID=SEQF9448.1|QYAA01000011.1_88_cas;Genome_ID=SEQF9448.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=+;E-value=4.8e-31;Score=104.9;Coverage_Seq=0.960960960960961;Coverage_Hmm=0.9523809523809523
SEQF9448.1|QYAA01000011.1	CCTyper	CDS	142308	143483	392	+	.	ID=SEQF9448.1|QYAA01000011.1_89_cas;Genome_ID=SEQF9448.1;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_1_CAS-III-A-III-D;coding_strand=+;E-value=3.6e-18;Score=63.2;Coverage_Seq=0.9642857142857143;Coverage_Hmm=0.978319783197832
SEQF9448.1|QYAA01000011.1	CCTyper	CDS	144240	145559	440	+	.	ID=SEQF9448.1|QYAA01000011.1_91_cas;Genome_ID=SEQF9448.1;Feature_type=CDS;Product=Cas Prediction : Csm6_7_CAS-III;coding_strand=+;E-value=3.5e-49;Score=164.4;Coverage_Seq=0.8363636363636363;Coverage_Hmm=0.9839142091152815