SEQF9499.1|PQNL01000081.1	CCTyper	repeat_region	2310	3132	823	+	.	ID=SEQF9499.1|PQNL01000081.1_1;Genome_ID=SEQF9499.1;Note=Predictor:CCtyper;Start:2310;End:3132;Consensus_Repeat:GGATCATCCCCGCTCACGCGGGGAGCAC;Number_of_Repeats:14;Repeat_Length:28;Average_Spacer_Length:33.2;Repeat_Identity:87.7;Spacer_Identity:43.0;Spacer_Length_Sem:0.1;Trusted:True;Cas_Type_Prediction: I-E;Cas_Subtype_Prediction:I-E;Subtype_Probability:0.968;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	direct_repeat	2310	2337	28	+	.	ID=SEQF9499.1|PQNL01000081.1_1_REPEAT1;Parent=SEQF9499.1|PQNL01000081.1_1;Note=AGGTCGTCCCCGCCCGGGCGGGGAGCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	binding_site	2338	2370	33	+	.	ID=SEQF9499.1|PQNL01000081.1_1_SPACER1;Parent=SEQF9499.1|PQNL01000081.1_1;Note=GCGTTCACCCACAACGAGTGGGAGTTCTGGGGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	direct_repeat	2371	2398	28	+	.	ID=SEQF9499.1|PQNL01000081.1_1_REPEAT2;Parent=SEQF9499.1|PQNL01000081.1_1;Note=GGATCATCCCCACTCACGCGGGGAGCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	binding_site	2399	2431	33	+	.	ID=SEQF9499.1|PQNL01000081.1_1_SPACER2;Parent=SEQF9499.1|PQNL01000081.1_1;Note=GCGGCGGTGCTGTTGGCGTGCTGGGGTGACGGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	direct_repeat	2432	2459	28	+	.	ID=SEQF9499.1|PQNL01000081.1_1_REPEAT3;Parent=SEQF9499.1|PQNL01000081.1_1;Note=GGATCATCCCCGCTCACGCGGGGAGCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	binding_site	2460	2493	34	+	.	ID=SEQF9499.1|PQNL01000081.1_1_SPACER3;Parent=SEQF9499.1|PQNL01000081.1_1;Note=GGTATGGGGTGTCCGTACCATGTCTTCTCGTCGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	direct_repeat	2494	2521	28	+	.	ID=SEQF9499.1|PQNL01000081.1_1_REPEAT4;Parent=SEQF9499.1|PQNL01000081.1_1;Note=GGATCATCCCCGCTCACGCGCGGAGCAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	binding_site	2522	2554	33	+	.	ID=SEQF9499.1|PQNL01000081.1_1_SPACER4;Parent=SEQF9499.1|PQNL01000081.1_1;Note=CTGTTCACCACTGGCTACGGCGGCGACGGGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	direct_repeat	2555	2582	28	+	.	ID=SEQF9499.1|PQNL01000081.1_1_REPEAT5;Parent=SEQF9499.1|PQNL01000081.1_1;Note=GGATCATCCCCGCTCACGCGGGGAGCGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	binding_site	2583	2615	33	+	.	ID=SEQF9499.1|PQNL01000081.1_1_SPACER5;Parent=SEQF9499.1|PQNL01000081.1_1;Note=TCCCCCACCGACCGTGCACAGCAGCTCGCCGAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	direct_repeat	2616	2643	28	+	.	ID=SEQF9499.1|PQNL01000081.1_1_REPEAT6;Parent=SEQF9499.1|PQNL01000081.1_1;Note=GGATCATCCCCGCTCACGCGGGGAGCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	binding_site	2644	2677	34	+	.	ID=SEQF9499.1|PQNL01000081.1_1_SPACER6;Parent=SEQF9499.1|PQNL01000081.1_1;Note=CCAGTGGGGGGGAGGAACGTGACTCCGCGGGTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	direct_repeat	2678	2705	28	+	.	ID=SEQF9499.1|PQNL01000081.1_1_REPEAT7;Parent=SEQF9499.1|PQNL01000081.1_1;Note=GGATCATCCCCGCTCACGCGGGGAGCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	binding_site	2706	2738	33	+	.	ID=SEQF9499.1|PQNL01000081.1_1_SPACER7;Parent=SEQF9499.1|PQNL01000081.1_1;Note=CCCGCCGCCCTGAACGACACGAAGCACGCCTCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	direct_repeat	2739	2766	28	+	.	ID=SEQF9499.1|PQNL01000081.1_1_REPEAT8;Parent=SEQF9499.1|PQNL01000081.1_1;Note=GGATCATCCCCGCTCACGCGGGAAGCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	binding_site	2767	2799	33	+	.	ID=SEQF9499.1|PQNL01000081.1_1_SPACER8;Parent=SEQF9499.1|PQNL01000081.1_1;Note=ACGCTCTCCAGCTGTCACAGGCGTCGGTGCCGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	direct_repeat	2800	2827	28	+	.	ID=SEQF9499.1|PQNL01000081.1_1_REPEAT9;Parent=SEQF9499.1|PQNL01000081.1_1;Note=GGATCATCCCCGCTCACGCGGGGAGCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	binding_site	2828	2860	33	+	.	ID=SEQF9499.1|PQNL01000081.1_1_SPACER9;Parent=SEQF9499.1|PQNL01000081.1_1;Note=TCGACAGTGCTCGTGTGGCGTGGCCGGAGTCGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	direct_repeat	2861	2888	28	+	.	ID=SEQF9499.1|PQNL01000081.1_1_REPEAT10;Parent=SEQF9499.1|PQNL01000081.1_1;Note=GGATCATCCCCGCTCACGCGGGGAGCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	binding_site	2889	2921	33	+	.	ID=SEQF9499.1|PQNL01000081.1_1_SPACER10;Parent=SEQF9499.1|PQNL01000081.1_1;Note=CAGGGGCGACATCGACTCGAACGCTGCCCTCGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	direct_repeat	2922	2949	28	+	.	ID=SEQF9499.1|PQNL01000081.1_1_REPEAT11;Parent=SEQF9499.1|PQNL01000081.1_1;Note=GGATCATCCCCGCTCGCGCGGGGAGCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	binding_site	2950	2982	33	+	.	ID=SEQF9499.1|PQNL01000081.1_1_SPACER11;Parent=SEQF9499.1|PQNL01000081.1_1;Note=TCCCACTACCTCGCTCCAATCGCCCCCGCCGCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	direct_repeat	2983	3010	28	+	.	ID=SEQF9499.1|PQNL01000081.1_1_REPEAT12;Parent=SEQF9499.1|PQNL01000081.1_1;Note=GGATCATCCCCGCTCGCGCGGGGAGCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	binding_site	3011	3043	33	+	.	ID=SEQF9499.1|PQNL01000081.1_1_SPACER12;Parent=SEQF9499.1|PQNL01000081.1_1;Note=CTATGCAGAAGACCGCACACCTGGCCGACCATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	direct_repeat	3044	3071	28	+	.	ID=SEQF9499.1|PQNL01000081.1_1_REPEAT13;Parent=SEQF9499.1|PQNL01000081.1_1;Note=GGATCATCCCCGCTCACGCGGGGAGCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	binding_site	3072	3104	33	+	.	ID=SEQF9499.1|PQNL01000081.1_1_SPACER13;Parent=SEQF9499.1|PQNL01000081.1_1;Note=ACGAATGATCTGCGGGCGGCGACGTCCCAGATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	direct_repeat	3105	3132	28	+	.	ID=SEQF9499.1|PQNL01000081.1_1_REPEAT14;Parent=SEQF9499.1|PQNL01000081.1_1;Note=GGATCATCCCCGCTCACGCGGGGAGCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9499.1|PQNL01000081.1	CCTyper	OPERON	3573	7265	3693	-	.	ID=SEQF9499.1|PQNL01000081.1@1;Genome_ID=SEQF9499.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-E;Complete_Interference=67%;Complete_Adaptation=50%;Best_type=I-E;Best_score=16.0;Genes=Cas1_0_IE,Cas6e_2_CAS-I-II-III-IV-V-VI,Cas5_2_CAS-I,Cas7_1_CAS-I-E,Cse2gr11_7_CAS-I-E;Positions=5,6,7,8,9;E-values=9.30e-54,8.90e-59,8.40e-46,3.30e-123,3.50e-30;CoverageSeq=0.821,0.947,0.871,0.889,0.774;CoverageHMM=0.572,1.0,0.995,0.939,0.84;Strand_Interference=-1;Strand_Adaptation=-1
SEQF9499.1|PQNL01000081.1	CCTyper	CDS	3573	4124	184	-	.	ID=SEQF9499.1|PQNL01000081.1_5_cas;Genome_ID=SEQF9499.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IE;coding_strand=-;E-value=9.3e-54;Score=179.4;Coverage_Seq=0.8206521739130435;Coverage_Hmm=0.5724907063197026
SEQF9499.1|PQNL01000081.1	CCTyper	CDS	4796	5494	233	-	.	ID=SEQF9499.1|PQNL01000081.1_7_cas;Genome_ID=SEQF9499.1;Feature_type=CDS;Product=Cas Prediction : Cas5_2_CAS-I;coding_strand=-;E-value=8.4e-46;Score=153.5;Coverage_Seq=0.871244635193133;Coverage_Hmm=0.9953051643192489
SEQF9499.1|PQNL01000081.1	CCTyper	CDS	4121	4795	225	-	.	ID=SEQF9499.1|PQNL01000081.1_6_cas;Genome_ID=SEQF9499.1;Feature_type=CDS;Product=Cas Prediction : Cas6e_2_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=8.9e-59;Score=196.1;Coverage_Seq=0.9466666666666667;Coverage_Hmm=1.0
SEQF9499.1|PQNL01000081.1	CCTyper	CDS	5500	6609	370	-	.	ID=SEQF9499.1|PQNL01000081.1_8_cas;Genome_ID=SEQF9499.1;Feature_type=CDS;Product=Cas Prediction : Cas7_1_CAS-I-E;coding_strand=-;E-value=3.3e-123;Score=408.6;Coverage_Seq=0.8891891891891892;Coverage_Hmm=0.9387186629526463
SEQF9499.1|PQNL01000081.1	CCTyper	CDS	6774	7265	164	-	.	ID=SEQF9499.1|PQNL01000081.1_9_cas;Genome_ID=SEQF9499.1;Feature_type=CDS;Product=Cas Prediction : Cse2gr11_7_CAS-I-E;coding_strand=-;E-value=3.5e-30;Score=102.2;Coverage_Seq=0.774390243902439;Coverage_Hmm=0.8402777777777778