SEQF9599.1|RJOX01000001.1	CCTyper	repeat_region	340829	342250	1422	+	.	ID=SEQF9599.1|RJOX01000001.1_1;Genome_ID=SEQF9599.1;Note=Predictor:CCtyper;Start:340829;End:342250;Consensus_Repeat:GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Number_of_Repeats:22;Repeat_Length:36;Average_Spacer_Length:30;Repeat_Identity:100.0;Spacer_Identity:40.6;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.549;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	direct_repeat	340829	340864	36	+	.	ID=SEQF9599.1|RJOX01000001.1_1_REPEAT1;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	binding_site	340865	340894	30	+	.	ID=SEQF9599.1|RJOX01000001.1_1_SPACER1;Parent=SEQF9599.1|RJOX01000001.1_1;Note=CGGCAGAACAAGTTTCCAACACCGTAGGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	direct_repeat	340895	340930	36	+	.	ID=SEQF9599.1|RJOX01000001.1_1_REPEAT2;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	binding_site	340931	340960	30	+	.	ID=SEQF9599.1|RJOX01000001.1_1_SPACER2;Parent=SEQF9599.1|RJOX01000001.1_1;Note=CAACCTTGCCTTTGACTATGCAATCGACCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	direct_repeat	340961	340996	36	+	.	ID=SEQF9599.1|RJOX01000001.1_1_REPEAT3;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	binding_site	340997	341026	30	+	.	ID=SEQF9599.1|RJOX01000001.1_1_SPACER3;Parent=SEQF9599.1|RJOX01000001.1_1;Note=TTTCCTTTTTGTGGTGTGGTTGTATCGGCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	direct_repeat	341027	341062	36	+	.	ID=SEQF9599.1|RJOX01000001.1_1_REPEAT4;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	binding_site	341063	341092	30	+	.	ID=SEQF9599.1|RJOX01000001.1_1_SPACER4;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GATAAATATATCTTCTTGCGTCATACCTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	direct_repeat	341093	341128	36	+	.	ID=SEQF9599.1|RJOX01000001.1_1_REPEAT5;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	binding_site	341129	341158	30	+	.	ID=SEQF9599.1|RJOX01000001.1_1_SPACER5;Parent=SEQF9599.1|RJOX01000001.1_1;Note=CAAACACAAGTACACAAGTTAAGCACCCGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	direct_repeat	341159	341194	36	+	.	ID=SEQF9599.1|RJOX01000001.1_1_REPEAT6;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	binding_site	341195	341224	30	+	.	ID=SEQF9599.1|RJOX01000001.1_1_SPACER6;Parent=SEQF9599.1|RJOX01000001.1_1;Note=CATCTGCTAGCGTATATGCCAAAAATCGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	direct_repeat	341225	341260	36	+	.	ID=SEQF9599.1|RJOX01000001.1_1_REPEAT7;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	binding_site	341261	341290	30	+	.	ID=SEQF9599.1|RJOX01000001.1_1_SPACER7;Parent=SEQF9599.1|RJOX01000001.1_1;Note=TTCACATCATGCCCGTTAGCGATATGCTCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	direct_repeat	341291	341326	36	+	.	ID=SEQF9599.1|RJOX01000001.1_1_REPEAT8;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	binding_site	341327	341356	30	+	.	ID=SEQF9599.1|RJOX01000001.1_1_SPACER8;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GGTAGCACGGTAGCACTTAATGGTCATTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	direct_repeat	341357	341392	36	+	.	ID=SEQF9599.1|RJOX01000001.1_1_REPEAT9;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	binding_site	341393	341422	30	+	.	ID=SEQF9599.1|RJOX01000001.1_1_SPACER9;Parent=SEQF9599.1|RJOX01000001.1_1;Note=AAATGAAACCGTCATGAAATGGCAAGACGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	direct_repeat	341423	341458	36	+	.	ID=SEQF9599.1|RJOX01000001.1_1_REPEAT10;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	binding_site	341459	341488	30	+	.	ID=SEQF9599.1|RJOX01000001.1_1_SPACER10;Parent=SEQF9599.1|RJOX01000001.1_1;Note=TTTACAAAATAACAATTACGAAAATTCAGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	direct_repeat	341489	341524	36	+	.	ID=SEQF9599.1|RJOX01000001.1_1_REPEAT11;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	binding_site	341525	341554	30	+	.	ID=SEQF9599.1|RJOX01000001.1_1_SPACER11;Parent=SEQF9599.1|RJOX01000001.1_1;Note=CTTGCTTCTCGTGAAGCACTGAATTACACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	direct_repeat	341555	341590	36	+	.	ID=SEQF9599.1|RJOX01000001.1_1_REPEAT12;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	binding_site	341591	341620	30	+	.	ID=SEQF9599.1|RJOX01000001.1_1_SPACER12;Parent=SEQF9599.1|RJOX01000001.1_1;Note=ACGCTCTCCACGAATCAGAATAATTCTGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	direct_repeat	341621	341656	36	+	.	ID=SEQF9599.1|RJOX01000001.1_1_REPEAT13;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	binding_site	341657	341686	30	+	.	ID=SEQF9599.1|RJOX01000001.1_1_SPACER13;Parent=SEQF9599.1|RJOX01000001.1_1;Note=CACTCTCGTAAGCTCTGGTATTAATGTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	direct_repeat	341687	341722	36	+	.	ID=SEQF9599.1|RJOX01000001.1_1_REPEAT14;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	binding_site	341723	341752	30	+	.	ID=SEQF9599.1|RJOX01000001.1_1_SPACER14;Parent=SEQF9599.1|RJOX01000001.1_1;Note=TTCAGGTTATTGAAGATTATGGGATTGAGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	direct_repeat	341753	341788	36	+	.	ID=SEQF9599.1|RJOX01000001.1_1_REPEAT15;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	binding_site	341789	341818	30	+	.	ID=SEQF9599.1|RJOX01000001.1_1_SPACER15;Parent=SEQF9599.1|RJOX01000001.1_1;Note=TCACTATTTTTGAAATTACGATTAACAGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	direct_repeat	341819	341854	36	+	.	ID=SEQF9599.1|RJOX01000001.1_1_REPEAT16;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	binding_site	341855	341884	30	+	.	ID=SEQF9599.1|RJOX01000001.1_1_SPACER16;Parent=SEQF9599.1|RJOX01000001.1_1;Note=CGACAACAACGAGAAGCCACCCGTTCAACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	direct_repeat	341885	341920	36	+	.	ID=SEQF9599.1|RJOX01000001.1_1_REPEAT17;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	binding_site	341921	341950	30	+	.	ID=SEQF9599.1|RJOX01000001.1_1_SPACER17;Parent=SEQF9599.1|RJOX01000001.1_1;Note=ATGGATCCGTTTCAATCCCATGGACGGAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	direct_repeat	341951	341986	36	+	.	ID=SEQF9599.1|RJOX01000001.1_1_REPEAT18;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	binding_site	341987	342016	30	+	.	ID=SEQF9599.1|RJOX01000001.1_1_SPACER18;Parent=SEQF9599.1|RJOX01000001.1_1;Note=ATTAGTTGATTTGTGATTAACTGTTATGAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	direct_repeat	342017	342052	36	+	.	ID=SEQF9599.1|RJOX01000001.1_1_REPEAT19;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	binding_site	342053	342082	30	+	.	ID=SEQF9599.1|RJOX01000001.1_1_SPACER19;Parent=SEQF9599.1|RJOX01000001.1_1;Note=TATTCCCTTTCTAATGAGCATGCCACTTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	direct_repeat	342083	342118	36	+	.	ID=SEQF9599.1|RJOX01000001.1_1_REPEAT20;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	binding_site	342119	342148	30	+	.	ID=SEQF9599.1|RJOX01000001.1_1_SPACER20;Parent=SEQF9599.1|RJOX01000001.1_1;Note=AAACCTGATGGTCGGAACGAAAGATTTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	direct_repeat	342149	342184	36	+	.	ID=SEQF9599.1|RJOX01000001.1_1_REPEAT21;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	binding_site	342185	342214	30	+	.	ID=SEQF9599.1|RJOX01000001.1_1_SPACER21;Parent=SEQF9599.1|RJOX01000001.1_1;Note=TGATTTCCCCTGCAATAAGTGTCTAACCCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	direct_repeat	342215	342250	36	+	.	ID=SEQF9599.1|RJOX01000001.1_1_REPEAT22;Parent=SEQF9599.1|RJOX01000001.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9599.1|RJOX01000001.1	CCTyper	OPERON	334767	340738	5972	+	.	ID=SEQF9599.1|RJOX01000001.1@11;Genome_ID=SEQF9599.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_1_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_1_CAS-II-A;Positions=319,320,321,322;E-values=0.00e+00,7.90e-103,4.40e-51,2.30e-101;CoverageSeq=0.996,0.931,0.939,0.982;CoverageHMM=0.999,0.996,0.957,0.995;Strand_Interference=1;Strand_Adaptation=1
SEQF9599.1|RJOX01000001.1	CCTyper	CDS	338879	339745	289	+	.	ID=SEQF9599.1|RJOX01000001.1_320_cas;Genome_ID=SEQF9599.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=7.9e-103;Score=340.3;Coverage_Seq=0.9307958477508651;Coverage_Hmm=0.9963636363636363
SEQF9599.1|RJOX01000001.1	CCTyper	CDS	339742	340086	115	+	.	ID=SEQF9599.1|RJOX01000001.1_321_cas;Genome_ID=SEQF9599.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=4.4e-51;Score=169.0;Coverage_Seq=0.9391304347826087;Coverage_Hmm=0.9568965517241379
SEQF9599.1|RJOX01000001.1	CCTyper	CDS	334767	338879	1371	+	.	ID=SEQF9599.1|RJOX01000001.1_319_cas;Genome_ID=SEQF9599.1;Feature_type=CDS;Product=Cas Prediction : Cas9_1_II;coding_strand=+;E-value=0.0;Score=1247.2;Coverage_Seq=0.9956236323851203;Coverage_Hmm=0.9991071428571429
SEQF9599.1|RJOX01000001.1	CCTyper	CDS	340076	340738	221	+	.	ID=SEQF9599.1|RJOX01000001.1_322_cas;Genome_ID=SEQF9599.1;Feature_type=CDS;Product=Cas Prediction : Csn2_1_CAS-II-A;coding_strand=+;E-value=2.3e-101;Score=335.0;Coverage_Seq=0.9819004524886877;Coverage_Hmm=0.9954128440366973