SEQF9690.1|CP029653.1	CCTyper	repeat_region	61276	62169	894	+	.	ID=SEQF9690.1|CP029653.1_1;Genome_ID=SEQF9690.1;Note=Predictor:CCtyper;Start:61276;End:62169;Consensus_Repeat:GATCGATAACTACCCCGAATAACAGGGGACGAGAAT;Number_of_Repeats:13;Repeat_Length:36;Average_Spacer_Length:35.5;Repeat_Identity:95.0;Spacer_Identity:46.4;Spacer_Length_Sem:0.4;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.995;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	direct_repeat	61276	61311	36	+	.	ID=SEQF9690.1|CP029653.1_1_REPEAT1;Parent=SEQF9690.1|CP029653.1_1;Note=GATCGATAACTACCCCGAATAACAGGGGACGAGAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	binding_site	61312	61347	36	+	.	ID=SEQF9690.1|CP029653.1_1_SPACER1;Parent=SEQF9690.1|CP029653.1_1;Note=ACTTCTCTCGCCATTTCTGCTAATTGTTCTACTTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	direct_repeat	61348	61383	36	+	.	ID=SEQF9690.1|CP029653.1_1_REPEAT2;Parent=SEQF9690.1|CP029653.1_1;Note=GATCGATAACTACCCCGAATAACAGGGGACGAGAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	binding_site	61384	61419	36	+	.	ID=SEQF9690.1|CP029653.1_1_SPACER2;Parent=SEQF9690.1|CP029653.1_1;Note=TCTATAAGTTCATTAATTCCGATACCTAGATTATCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	direct_repeat	61420	61455	36	+	.	ID=SEQF9690.1|CP029653.1_1_REPEAT3;Parent=SEQF9690.1|CP029653.1_1;Note=GATCGATAACTACCCCGAATAACAGGGGACGAGAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	binding_site	61456	61489	34	+	.	ID=SEQF9690.1|CP029653.1_1_SPACER3;Parent=SEQF9690.1|CP029653.1_1;Note=TTTTTTCCACCCTTTCAGATCATCTATGATCTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	direct_repeat	61490	61525	36	+	.	ID=SEQF9690.1|CP029653.1_1_REPEAT4;Parent=SEQF9690.1|CP029653.1_1;Note=GATCGATAACTACCCCGAATAACAGGGGACGAGAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	binding_site	61526	61563	38	+	.	ID=SEQF9690.1|CP029653.1_1_SPACER4;Parent=SEQF9690.1|CP029653.1_1;Note=TCTGTAATGTATTCATTTAATGTAATCATAATTTTTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	direct_repeat	61564	61599	36	+	.	ID=SEQF9690.1|CP029653.1_1_REPEAT5;Parent=SEQF9690.1|CP029653.1_1;Note=GATCGATAACTACCCCGAATAACAGGGGACGAGAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	binding_site	61600	61636	37	+	.	ID=SEQF9690.1|CP029653.1_1_SPACER5;Parent=SEQF9690.1|CP029653.1_1;Note=TAGACCATTTACCTCATTATATTTATAGTCTTTATTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	direct_repeat	61637	61672	36	+	.	ID=SEQF9690.1|CP029653.1_1_REPEAT6;Parent=SEQF9690.1|CP029653.1_1;Note=GATCGATAACTACCCCGAATAACAGGGGACGAGAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	binding_site	61673	61707	35	+	.	ID=SEQF9690.1|CP029653.1_1_SPACER6;Parent=SEQF9690.1|CP029653.1_1;Note=TTTTCTTTAACTGTTTTTACTGCCCATTTAATAGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	direct_repeat	61708	61743	36	+	.	ID=SEQF9690.1|CP029653.1_1_REPEAT7;Parent=SEQF9690.1|CP029653.1_1;Note=GATCGATAACTACCCCGAATAACAGGGGACGAGAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	binding_site	61744	61778	35	+	.	ID=SEQF9690.1|CP029653.1_1_SPACER7;Parent=SEQF9690.1|CP029653.1_1;Note=ATAAACCCGTTCAATTCGTTATCTTTAAATTCTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	direct_repeat	61779	61814	36	+	.	ID=SEQF9690.1|CP029653.1_1_REPEAT8;Parent=SEQF9690.1|CP029653.1_1;Note=GATCGATAACTACCCCGAATAACAGGGGACGAGAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	binding_site	61815	61850	36	+	.	ID=SEQF9690.1|CP029653.1_1_SPACER8;Parent=SEQF9690.1|CP029653.1_1;Note=ACAACTTCGTCATCTTTCATCATTTCTCTTACATCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	direct_repeat	61851	61886	36	+	.	ID=SEQF9690.1|CP029653.1_1_REPEAT9;Parent=SEQF9690.1|CP029653.1_1;Note=GATCGATAACTACCCCGAATAACAGGGGACGAGAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	binding_site	61887	61922	36	+	.	ID=SEQF9690.1|CP029653.1_1_SPACER9;Parent=SEQF9690.1|CP029653.1_1;Note=ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	direct_repeat	61923	61958	36	+	.	ID=SEQF9690.1|CP029653.1_1_REPEAT10;Parent=SEQF9690.1|CP029653.1_1;Note=GATCGATAACTACCCCGAATAACAGGGGACGAGAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	binding_site	61959	61993	35	+	.	ID=SEQF9690.1|CP029653.1_1_SPACER10;Parent=SEQF9690.1|CP029653.1_1;Note=AAGTTAACGGCATTACCTAATAAAAATATTTTAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	direct_repeat	61994	62029	36	+	.	ID=SEQF9690.1|CP029653.1_1_REPEAT11;Parent=SEQF9690.1|CP029653.1_1;Note=GATCGATAACTACCCCGAATAACAGGGGACGAGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	binding_site	62030	62062	33	+	.	ID=SEQF9690.1|CP029653.1_1_SPACER11;Parent=SEQF9690.1|CP029653.1_1;Note=TCATCTTTCATGTCACTGATTAATTCATTTGTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	direct_repeat	62063	62098	36	+	.	ID=SEQF9690.1|CP029653.1_1_REPEAT12;Parent=SEQF9690.1|CP029653.1_1;Note=GATCGATAACTACCCCGAATAACAGGGGACGAGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	binding_site	62099	62133	35	+	.	ID=SEQF9690.1|CP029653.1_1_SPACER12;Parent=SEQF9690.1|CP029653.1_1;Note=GGTAATAGTTGCTCAATAGGTAATAAAACGTCGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	direct_repeat	62134	62169	36	+	.	ID=SEQF9690.1|CP029653.1_1_REPEAT13;Parent=SEQF9690.1|CP029653.1_1;Note=GATCGATAACTATCCCGAATAACAGGGGACAGAGTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	repeat_region	70892	71139	248	+	.	ID=SEQF9690.1|CP029653.1_2;Genome_ID=SEQF9690.1;Note=Predictor:CCtyper;Start:70892;End:71139;Consensus_Repeat:ATTCGATAACTACCCCGTAGAAGAGGGGACGAG;Number_of_Repeats:4;Repeat_Length:33;Average_Spacer_Length:38.7;Repeat_Identity:97.1;Spacer_Identity:48.9;Spacer_Length_Sem:1.8;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.992;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	direct_repeat	70892	70924	33	+	.	ID=SEQF9690.1|CP029653.1_2_REPEAT1;Parent=SEQF9690.1|CP029653.1_2;Note=ATTCGATAACTACCCCGTAGAAGAGGGGACGAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	binding_site	70925	70962	38	+	.	ID=SEQF9690.1|CP029653.1_2_SPACER1;Parent=SEQF9690.1|CP029653.1_2;Note=AACTCTTCTAAGACGCGATATGATTCTAATTGGTCTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	direct_repeat	70963	70995	33	+	.	ID=SEQF9690.1|CP029653.1_2_REPEAT2;Parent=SEQF9690.1|CP029653.1_2;Note=ATTCGATAACTACCCCCGTAGAAGAGGGGACGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	binding_site	70996	71037	42	+	.	ID=SEQF9690.1|CP029653.1_2_SPACER2;Parent=SEQF9690.1|CP029653.1_2;Note=GAACTGATATACTCCTTTACCATGTATTAATTCTGGACCACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	direct_repeat	71038	71070	33	+	.	ID=SEQF9690.1|CP029653.1_2_REPEAT3;Parent=SEQF9690.1|CP029653.1_2;Note=ATTCGATAACTACCCCGTAGAAGAGGGGACGAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	binding_site	71071	71106	36	+	.	ID=SEQF9690.1|CP029653.1_2_SPACER3;Parent=SEQF9690.1|CP029653.1_2;Note=AACTCATATTCGATCGTGTATATCAAAACTTTATGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	direct_repeat	71107	71139	33	+	.	ID=SEQF9690.1|CP029653.1_2_REPEAT4;Parent=SEQF9690.1|CP029653.1_2;Note=ATTCGATAACTACCCCGTAGAAGAGGGGACGAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9690.1|CP029653.1	CCTyper	OPERON	62243	73623	11381	+	.	ID=SEQF9690.1|CP029653.1@2;Genome_ID=SEQF9690.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=20.0;Genes=Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_0_CAS-I-II-III-IV-V-VI,Cas10_1_CAS-III,Csm2gr11_0_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm5gr7_0_CAS-III-A-III-D,Csm6_0_IIIA,Cas6_0_CAS-I-II-III-IV-V-VI,Csa3_1_CAS-I-II-III-IV-V-VI;Positions=57,58,59,60,61,62,63,64,65,68;E-values=7.20e-95,8.30e-26,1.00e-211,3.90e-25,7.40e-84,1.70e-51,2.30e-29,1.40e-131,9.20e-27,5.90e-16;CoverageSeq=0.917,0.892,0.844,0.676,0.953,0.993,0.827,0.849,0.816,0.627;CoverageHMM=0.996,0.967,0.998,1.0,0.991,0.978,0.732,0.994,0.99,0.78;Strand_Interference=1;Strand_Adaptation=NA
SEQF9690.1|CP029653.1	CCTyper	CDS	63467	65740	758	+	.	ID=SEQF9690.1|CP029653.1_59_cas;Genome_ID=SEQF9690.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=+;E-value=1e-211;Score=702.3;Coverage_Seq=0.8443271767810027;Coverage_Hmm=0.9984709480122325
SEQF9690.1|CP029653.1	CCTyper	CDS	62243	63148	302	+	.	ID=SEQF9690.1|CP029653.1_57_cas;Genome_ID=SEQF9690.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=7.199999999999999e-95;Score=314.6;Coverage_Seq=0.9172185430463576;Coverage_Hmm=0.9963636363636363
SEQF9690.1|CP029653.1	CCTyper	CDS	63148	63453	102	+	.	ID=SEQF9690.1|CP029653.1_58_cas;Genome_ID=SEQF9690.1;Feature_type=CDS;Product=Cas Prediction : Cas2_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=8.3e-26;Score=87.6;Coverage_Seq=0.8921568627450981;Coverage_Hmm=0.9666666666666667
SEQF9690.1|CP029653.1	CCTyper	CDS	70023	70757	245	+	.	ID=SEQF9690.1|CP029653.1_65_cas;Genome_ID=SEQF9690.1;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=9.2e-27;Score=92.0;Coverage_Seq=0.8163265306122449;Coverage_Hmm=0.9896907216494846
SEQF9690.1|CP029653.1	CCTyper	CDS	73222	73623	134	+	.	ID=SEQF9690.1|CP029653.1_68_cas;Genome_ID=SEQF9690.1;Feature_type=CDS;Product=Cas Prediction : Csa3_1_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=5.9e-16;Score=56.2;Coverage_Seq=0.6268656716417911;Coverage_Hmm=0.7796610169491526
SEQF9690.1|CP029653.1	CCTyper	CDS	65743	66168	142	+	.	ID=SEQF9690.1|CP029653.1_60_cas;Genome_ID=SEQF9690.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_0_CAS-III-A;coding_strand=+;E-value=3.9e-25;Score=85.9;Coverage_Seq=0.676056338028169;Coverage_Hmm=1.0
SEQF9690.1|CP029653.1	CCTyper	CDS	66170	66814	215	+	.	ID=SEQF9690.1|CP029653.1_61_cas;Genome_ID=SEQF9690.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=+;E-value=7.4e-84;Score=278.1;Coverage_Seq=0.9534883720930233;Coverage_Hmm=0.9906976744186047
SEQF9690.1|CP029653.1	CCTyper	CDS	66825	67733	303	+	.	ID=SEQF9690.1|CP029653.1_62_cas;Genome_ID=SEQF9690.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=+;E-value=1.7e-51;Score=172.6;Coverage_Seq=0.9933993399339934;Coverage_Hmm=0.9777777777777777
SEQF9690.1|CP029653.1	CCTyper	CDS	67736	68758	341	+	.	ID=SEQF9690.1|CP029653.1_63_cas;Genome_ID=SEQF9690.1;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=+;E-value=2.3e-29;Score=100.1;Coverage_Seq=0.8269794721407625;Coverage_Hmm=0.7315068493150685
SEQF9690.1|CP029653.1	CCTyper	CDS	68758	70026	423	+	.	ID=SEQF9690.1|CP029653.1_64_cas;Genome_ID=SEQF9690.1;Feature_type=CDS;Product=Cas Prediction : Csm6_0_IIIA;coding_strand=+;E-value=1.4e-131;Score=436.1;Coverage_Seq=0.8486997635933806;Coverage_Hmm=0.994475138121547