SEQF9938.1|JAATPL010000005.1	CCTyper	repeat_region	50	1635	1586	+	.	ID=SEQF9938.1|JAATPL010000005.1_1;Genome_ID=SEQF9938.1;Note=Predictor:CCtyper;Start:50;End:1635;Consensus_Repeat:GTTGGTTATCACATAGGTGATTTATTGG;Number_of_Repeats:27;Repeat_Length:28;Average_Spacer_Length:31.9;Repeat_Identity:94.1;Spacer_Identity:42.9;Spacer_Length_Sem:0.1;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:II-B;Subtype_Probability:0.562;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	50	77	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT1;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	78	109	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER1;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=AAAACAATATTGATTAATTTGATTTGAGTAGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	110	137	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT2;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	138	169	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER2;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=TTAGAGAAATTAGGTATCTTTCAGATTCAAGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	170	197	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT3;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	198	229	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER3;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=AAAATATTTGATGATGGCTATTGTCAGAGAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	230	257	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT4;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	258	289	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER4;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=AAGCGTTACTGTGCTTTGCCGGTGGTAAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	290	317	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT5;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	318	349	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER5;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTATCAATATTACGTCCGTGTACTTGGGTTCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	350	377	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT6;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	378	409	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER6;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=ATTGCTCATCCCTGCGTTTAGTACATATAAGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	410	437	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT7;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=TTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	438	469	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER7;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=TTTAGATTTTTCCCCTATATAAATACCTAATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	470	497	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT8;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=TTTGGTAATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	498	529	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER8;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=AGTCAAAAGCCAAAGTCGTGACCATTAAAAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	530	557	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT9;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	558	589	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER9;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=CATTTAAGGCAATGCACTTACAAACACAAAGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	590	617	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT10;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	618	649	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER10;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GGCAAAAGGAACGGCTGGCTAACGCCACTATA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	650	677	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT11;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	678	709	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER11;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=TCTAATAGCTTGCTTTTCACTAAACCTTTGCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	710	737	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT12;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	738	769	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER12;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=TTCATGATTCTACTTGTCACACAGAACATCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	770	797	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT13;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	798	829	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER13;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=ATTACTAAAAGGTGCTGAATTGTTGCTATTTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	830	857	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT14;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACATAGGTGATTTACTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	858	889	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER14;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=TAATGATAGGAGATGTATTGTCACATCCTATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	890	917	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT15;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	918	949	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER15;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=TTTAAATCAAACTTGGCTACCATTTGAGAGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	950	977	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT16;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	978	1009	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER16;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=AAAGCAGAAATGTAAAATATATTGACTTGTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	1010	1037	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT17;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	1038	1069	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER17;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=TGAGCAATCAAAGTAAAGTCCGAATCAACAGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	1070	1097	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT18;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	1098	1129	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER18;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=TAATAGTAGAGCTTTGTAAAACTAATCCATAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	1130	1157	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT19;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=TTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	1158	1189	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER19;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=TCTCTGAGCGAGTTCATACTCAATATCGTACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	1190	1217	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT20;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	1218	1249	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER20;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=ACAAACCGTGCCATCTTTCGACTTTTAGTACG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	1250	1277	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT21;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACACAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	1278	1309	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER21;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=ATAGATTCTTCTAGCATGAGTTTTCAGGTAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	1310	1337	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT22;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	1338	1369	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER22;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=TTGCGTGGTTGCTCTTACAAAAATAGATTGAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	1370	1397	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT23;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	1398	1429	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER23;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=AATGTGCCAGAAAATATGGATGCAAATGCGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	1430	1457	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT24;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	1458	1489	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER24;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=AATACAGCAGTTACGCCAGTATCAAATAACTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	1490	1517	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT25;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	1518	1549	32	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER25;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=TTCATGATTCTACTTGTCACACAGAACATCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	1550	1577	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT26;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=GTTGGTTATCACATAGGTGATTTATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	binding_site	1578	1607	30	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_SPACER26;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=ATTACGTTAGAATAAGGCCATGCTACAAGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000005.1	CCTyper	direct_repeat	1608	1635	28	+	.	ID=SEQF9938.1|JAATPL010000005.1_1_REPEAT27;Parent=SEQF9938.1|JAATPL010000005.1_1;Note=CATTCTAATCACATAAGTGATTTAACGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF9938.1|JAATPL010000016.1	CCTyper	OPERON	55501	59810	4310	+	.	ID=SEQF9938.1|JAATPL010000016.1@1;Genome_ID=SEQF9938.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type IV-A3;Complete_Interference=80%;Complete_Adaptation=NA;Best_type=IV-A3;Best_score=10.0;Genes=Cas6_0_IVA3,Csf4_0_IVA,Csf3_0_IV,Csf2_1_IVA3;Positions=68,69,70,71;E-values=1.40e-13,1.10e-125,1.20e-37,1.10e-41;CoverageSeq=0.39,0.987,0.955,0.665;CoverageHMM=0.434,0.982,0.964,0.848;Strand_Interference=1;Strand_Adaptation=NA
SEQF9938.1|JAATPL010000016.1	CCTyper	CDS	55501	56100	200	+	.	ID=SEQF9938.1|JAATPL010000016.1_68_cas;Genome_ID=SEQF9938.1;Feature_type=CDS;Product=Cas Prediction : Cas6_0_IVA3;coding_strand=+;E-value=1.4e-13;Score=48.6;Coverage_Seq=0.39;Coverage_Hmm=0.43386243386243384
SEQF9938.1|JAATPL010000016.1	CCTyper	CDS	58800	59810	337	+	.	ID=SEQF9938.1|JAATPL010000016.1_71_cas;Genome_ID=SEQF9938.1;Feature_type=CDS;Product=Cas Prediction : Csf2_1_IVA3;coding_strand=+;E-value=1.1e-41;Score=140.4;Coverage_Seq=0.6646884272997032;Coverage_Hmm=0.8479087452471483
SEQF9938.1|JAATPL010000016.1	CCTyper	CDS	58133	58798	222	+	.	ID=SEQF9938.1|JAATPL010000016.1_70_cas;Genome_ID=SEQF9938.1;Feature_type=CDS;Product=Cas Prediction : Csf3_0_IV;coding_strand=+;E-value=1.2e-37;Score=127.4;Coverage_Seq=0.954954954954955;Coverage_Hmm=0.963963963963964
SEQF9938.1|JAATPL010000016.1	CCTyper	CDS	56097	58136	680	+	.	ID=SEQF9938.1|JAATPL010000016.1_69_cas;Genome_ID=SEQF9938.1;Feature_type=CDS;Product=Cas Prediction : Csf4_0_IVA;coding_strand=+;E-value=1.1000000000000001e-125;Score=418.3;Coverage_Seq=0.986764705882353;Coverage_Hmm=0.9819819819819819