>SEQF1086_CAE40381.1 glucose inhibited division protein A [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDFPREFDVIVVGGGHAGTEAALAAARAGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDALGGAMAIATDEAGIQ
FRILNSSKGPAVRATRAQADRVLYRNAIRAQLENQPNLWLFQQAVDDLMVQGDQVVGAVTQIGLRFRARTVVLTAGTFLN
GLIHVGLQNYSGGRAGDPPANSLGQRLKELQLPQGRLKTGTPPRIDGRSINYSVLEEQPGDLDPVPVFSFLGKASMHPRQ
LPCWITHTNARTHEIIRGGLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKASHQVFLEPEGLNTHEIYPNGVSTSLPFD
VQYELIHSLPGLENAHILRPGYAIEYDYFDPRALKSTLETKAISGLFFAGQINGTTGYEEAAAQGLLAGANAALQAQGKE
PWVPRRDEAYLGVLVDDLVTRGVTEPYRMFTSRAEYRLSLREDNADLRLTEIGRRLGLVDDVRWDAFSRKRDAVAQEVER
LKSTWVNPRVLPAHAAEALLGKAIEREYSLSDLLKRPNVSYEALMQARTDEGELLAGPGVLEDQVLAEQVETQVKYAGYI
ARQQDEVQKHLSHEQQPIPADIDYDAVTSLSFEVRQKLKTHRPETIGQAARVSGVTPAAISLLLIHLKRLHYGSRKQAA
>SEQF1086_CAE40382.1 glucose inhibited division protein B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAVPDIPGGPAQRLAQACDALRLPADAGQQQKLLRYIEQMQRWNRTYNLTAIRDPGQMLVQHLFDSLSVVAPLERGLPA
AGSGARVKLFDVGSGGGLPGVVLAIMRAHWDVTCVDAVEKKTAFVRQMAGALGLPNLQAAHTRIEQLEPAQCDVVISRAF
ASLQDFAKLAGRHVREGGTLVAMKGKVPDDEIQALQQHGHWTVERIEPLVVPALDAQRCLIWMRRSQGNI
>SEQF1086_CAE40383.1 ParA family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKNIPPSKSARVFCIANQKGGVGKTTTAINLAAGLATHKQRVLLVDLDPQGNATMGSGIDKSTLESNLYQVLIGEAGIEQ
TRVRSESGGYDVLPANRELSGAEIDLVQMDERERQLKAAIDKIAGEYDFVLIDCPPTLSLLTLNGLAAAHGVIIPMQCEY
FALEGLSDLVNTIKRVHRNINNELRVIGLLRVMFDPRMTLQQQVSAQLESHFGDKVFTTVVPRNVRLAEAPSYGMPGVVY
DRASRGAQAYIAFGAEMIERVKELD
>SEQF1086_CAE40384.1 Putative acetyltransferase, GnaT family [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPAVLAVPAAHPAPAAGGELARLEEAALNATTVREQMLYEGWLVRWAPSRAKRARCVNVLGLSTRPLDERLAYCTRWYAG
HGVPLIVRLTSIGPDFSLDAQLHERGFVAFDRTCVMAASVVPFTAQAPSGLVFERTTPGRFAQEAGRLQAAPLENLPLLV
RDASGECIAAGLAAFDAELVGLFDIVTAPQRRRQGCGAAVLKYLLEQASHAGARQAYLQVEPQNTAARALYARFGFVDRY
TYWYRSMSEATPV
>SEQF1086_CAE40385.1 probable chromosome partitioning protein ParB [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVTKKPKGLGRGLDALLGADVPAIDNIGKAPAAAPEGPPATLPVSKMRAGKYQPRTRMDEGALNELAESIRTQGIMQPIL
VRALGADAPGQYEIIVGERRFRAAQLAGLKEVPVLVREVADENAAVMALIENIQREDLNPLEEAHGVRRLLDEFGLTHEQ
AAQAIGRSRSATSNLLRLLNLAAPVQTMLLAGDVDMGHARALLAVDAATQIQLANQVIAKRLSVREAEKLVARAQKDVDA
APRKKGNGASRDVTRLEEALSDHLGTRVALKVGAREKGQIVIDFHGWEHLNSLLERQGLSGVVDA
>SEQF1086_CAE40387.1 elongation factor Tu [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLSNKFGGEARGYDQIDAAPEEKARGITINTSHVEYETETRHYAHV
DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSK
YDFPGDDTPIVKGSAKLALEGDKGELGEQAILSLAQALDTYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRIERGVVK
VGEEIEIVGIKPTVKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGSINPHTDFTAEVYILSKEEGG
RHTPFFNGYRPQFYFRTTDVTGTIDLPADKEMVLPGDNVSMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKIIK
>SEQF1086_CAE40388.1 preprotein translocase SecE subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNTSIETVTSTADRIKLGLAVLVVIAGIVGFSMLDAQPMVARIGVFVGGLVVAALLAWFSEPGRRTLSFAGESYNEVKR
VSWPTRKETIQMTGIVFAFVAVMGLLMWVLDKGIEWVLYGLLLGWK
>SEQF1086_CAE40389.1 transcription antitermination protein NusG [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKRWYVVHVYSGMEKSVQKALNERIERAELQTSFGRILVPSEEVVEVKGGQKSITERRIFPGYVLVEMDLTDETWHLVK
NTNRVTGFLGGSGNRPTPISEREVEKILNQMEEGVEKPRPKILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTI
FGRATPVELDFSQVEKT
>SEQF1086_CAE40390.1 50S ribosomal protein L11 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAKKIVGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAKTQGMELGLPIPVVITAFADKSFTFIMKTPPATVLI
KKASGVQKGSAKPHTDKVGTLTRAQAEEIAKTKQPDLTAADLDAAVRTIAGSARSMGITVEGG
>SEQF1086_CAE40391.1 50S ribosomal protein L1 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAKLSKRAAAIAQKIDRTKLYPVGEALNLVKETATAKFDESIDVAVQLGIDPKKSDQLVRGSVVLPAGTGKTVRVAVFAQ
GEKADAARAAGADIVGLDDLAEQIKAGQMDFDVVIASPDTMRVVGALGQVLGPRGLMPNPKVGTVTPDVATAVKNAKAGQ
IQYRTDKAGIIHATIGRASFGVEQLQNNLAALVDALQKARPAAAKGIYLRKLAVSSTMGGGARVEIASLSAN
>SEQF1086_CAE40392.1 50S ribosomal protein L10 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLNRQEKAVVIEEVSAQVAKAQSIVIAEYRGLDVASVTVLRKTARESGVYLRVLKNTLVRRAVAGTAFEPLSEQLTGPL
IYGISADPVAAAKVLAGFAKSNDKLVIKAGSLPNSLLTQDGVKALATMPSREELLSKLLGTMQAPIAQFVRTLNEVPTKF
ARGLAAVRDQKAAA
>SEQF1086_CAE40393.1 50S ribosomal protein L7/L12 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALSKAEILDAIAGMSVLELSELIKEMEEKFGVSAAAAAVAVAAPAAGGAGAAAAEEQTEFTVVLLEAGANKVSVIKAVR
ELTGLGLKEAKDLVDGAPKPVKEALPKADAEAAKKKLEEAGAKVEVK
>SEQF1086_CAE40394.1 DNA-directed RNA polymerase beta chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQADTATSDRVNEGLQAAFSSIFPIVSHNGMARLEFVSYALG
EPVFDVKECQQRGLTYASPLRAKVRLVLLDREVSKPTIKEVKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHRSPGVF
FEHDRGKTHSSGKLLFSARVIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGMTPESILAHFFDFDNFELKSEG
GMMEFVAERWKGEMARFDIADRDGKVIVEKDKRINAKHLRDLAAGGIQRVSVPEDFLYGRVLAKNIVDPDTGEVVAHAND
EITESVLNAMRAANVRDIQTLYTNDLDRGPYISQTLRADETADQMAARVAIYRMMRPGEPPTEEAVEALFQRLFYSEETY
DLSRVGRMKVNSRLGRGDDSTGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTH
YGRVCPIETPEGPNIGLINSMALYARLNEYGFLETPYRKIIDGKVSDQIDYLSAIEESHYVIAQANAALDDEGRFVDDLV
ACREAGETMLTAPGNVHYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGVERTVAVDSGT
TVQALRGGVVDHVDADRVVIRVNDEENVAGEVGVDIYNLIKYTRSNQNTNINQRPIVARGDKVAKGDVLADGASTDLGEL
ALGQNMLIAFMPWNGYNFEDSILISERVVADDRYTSIHIEELTVVARDTKLGPEEITRDISNLAETQLNRLDDSGIVYIG
AEVSADDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQSIIDDELR
RYRQDLNDQLRIVENDQFDRIEKMLVGKTVNGGPRKLAKGATLTKAYLADLDRWQWFDIRLADEQHAVVLEQAKESLEQK
RHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVKRRLQPGDKMAGRHGNKGVVSRITPVEDMPHMADGTPADIVLNPL
GVPSRMNVGQVLEVHLGWAAKGVGYRIADMLRDERTAQAKSVRGYLEKVYNTTGSSAHIDSLTDEEVLELANNLKKGVPF
ATPVFDGATEEEIGKMLELAYPDDVAARMRLTASRSQAWLYDGRTGEQFERPVTIGYMHYLKLHHLVDDKMHARSTGPYS
LVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRS
LALDMDLERN
>SEQF1086_CAE40395.1 DNA-directed RNA polymerase beta' chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKALLDLFKQVSQDEQFDAIKIGIASPEKIRSWSFGEVRKPETINYRTFKPERDGLFCAKIFGPIKDYECLCGKYKRLKH
RGVICEKCGVEVTVAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIM
SDDDFLAKTEEYGDDFRALMGAEAVRELLRTIDIDREVETLRGELKATSSEAKIKKISKRLKVLEGFQKSGIKAEWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIILRNEKRMLQEAVDSLLDNGRRGKAMTGAN
KRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKKL
VESQEPVVWDILEEVIREHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPSIVPSQDIVLGLYYTTRERINGKGEGIFFADVSEVQRAYDNGEVELQTRITVRLTEYERDEQ
GEWQPVKHRHETTVGRALLSEILPKGLPFTVLNKALKKKEISRLINQSFRRCGLRDTVIFADKLMQSGFRLATRGGISIA
MEDMLIPKAKEGILAEASREVKEIDKQYSSGLVTSQERYNNVVDIWGKAGDKVGKAMMEQLATEPVVNRHGEEVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL
VDVTQDLVITEDDCGTSHGYAMKALVEGGEVIEPLRDRILGRVAAIDVVNPDTQETAIAAGTLLDEDLVDLIDRLGVDEV
KVRTPLTCETRHGLCAHCYGRDLGRGSHVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSALASAVETKSNGTVGF
ASTMRYVTNAKGERVAISRSGELAIFDDNGRERERHKIPYGATVLVGDGEAVKAGTRLASWDPLTRPIVSEYSGAVRFEN
IEEGVTVAKQVDEVTGLSTLVVITPKTRGGKIVMRPQIKLVNENGEDVKIAGTDHSVNISFPVGALITVRDGQQVAVGEV
LARIPQESQKTRDITGGLPRVAELFEARSPKDAGMLAEVTGTVSFGKDTKGKQRLVITDLEGVSHEFLILKEKQVLVHDG
QVVNKGEMIVDGPADPHDILRLQGIEKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPGDTEFIPGEQVE
RSELLNENDRVVAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGT
GLAYHIARKDKEALEAAEREAARQLANPFEDAPVTVGGEPEAPAADTPSDDSAE
>SEQF1086_CAE40396.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPIILRPFLPSLSLAVLALSGCANLSQPAAEAPATPAALQALAEVRTEYGAGHYGEVIRRVARSDELAAAPKAVRIEAFK
LQAFSYCVSNYTQLCEDAFVRILHLDSSFTLAPNEAGHPAWGPVFRAAQSKAGT
>SEQF1086_CAE40397.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPLFAASQHPRSPFAGAAPLAHRPLSAIAATAAGGVPQARIKRLLGELVPQLASVHEQGHICGDITVDSVGLDESGRAHL
LALNGAAQGEAALPAPGYAPFELYVEDPAWPRGPWTDIYALSAVAHSLITGRRPPAAPERSVNDGYQPLAQRDLPKYDND
FLRAIDAGLAVRPHTFEAFVDSLKFPEPEPPAEAMAPLPSEPPPRDEVHDEEPVRQRPAVRSILFAILLALATLGVAVYW
WQRLTGTPSGVITSSERVTTPGATATPSDSREAEPPAAGAASPQGGDAGSADTSGAAPPAQAQAGPDAAPAPDVAPEDAA
TDAQAESEAAATPAPAAARVTVRINVQPWGEIWINGVRRGVSPPMKELRLVPGRYSVVVRNADLPPYRATL
>SEQF1086_CAE40399.1 putative peptidoglycan binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIRPFAPAFMLVCALVASAAVQAQPAGSLGENFLYRVRSGDTLIALASTYTGNESNWSILQTLNRVDDPQRLPIALELRI
PLAMIPVQAAGAEVVHVSGNATADGQALRVGTQIVEGSTIRTASGSFVTLKLSDGSQVTIPENGTVAANRLRQFQRVPLT
DSIFQVQQGELESRVAPGGQGVGRFEIRTPVAVTGVRGTRFRVKSSPRGASSEVLEGSVRLQPHAPDAALATPVAVSSGY
GANVGSDGAFSGVQALLPAPQLQAPARAASGGWTVPFAPVSGASAYIVRVSRDAEGMHVVASDRFDTNDVRFRAPGAGTY
YVAVRAVDASGLNGREAVQPFEGANVLSTPYGLSVATGTGDLVLLSEF
>SEQF1086_CAE40401.1 Two-component response regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRNTAPHCLKCVQARAFPFERLKAGREPADWQGFVMKQLSTLIMTPDDADRDRIIAAMLLAGISAKGCSTPLELFGLLSE
DTYDAVVMDLSELGELGYALVARLRGSPELGIIVIGGNLTLDARLRCLQSGADACVPLPADERELACVLLALARRLPAWQ
EDEEAVAQRGTDDEGWELRDQDWTLVAPGGEELSLSANERQIVRLLLGAAGRAIGRAELASELAVDGPAVRSTGERSIDV
IVSRLRRKAELAGLVLPIRTVYGSGYLFANS
>SEQF1086_CAE40402.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
>SEQF1086_CAE40404.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEMTMEQEPLNGWPQPYRLLDAQPYWDALQDEKLTYQQCVACRQSVWPAHSRCPHCSSDQLVWQASSGRATVYSFSTVTR
GPTPVWASIVPYTVGFVEMDEGYFLFTQIEGPPGSIGVGDKVQVRFVRRGAQILPVFVSADLPA
>SEQF1086_CAE40405.1 putative thiolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKAMAMTPKPTAAIVGMGDAYASMQDRKDPIQLAVAATHKALADAGITKDQVDAVFTGRSPWADKRSQWSNIFCSHMHMP
VTITSEITMHGAGLNATVAMAAQMIAAGRAQYVLCLQSDATELFVDAVAMGAEADADPQFEIPYGPTIPALYAQAACRYF
HEFGITEEDLADVAIANQSWAMHHPHAAKARFGSIDRAKVLSSPYVATPLRRWMCSTWGGGTGGALVVTSVDNARTAQDP
VYVMGYGSATTHEYLGDRMNMRRCRYPSLGAFPNLTHTATAEAARQAYESSGLTPADIDMAQISVNFAHMGPLIMEDLGF
AAKGRGMDLYRAGRTGVDGDLPIDTNGGWLSFGQPGISCNMDSYAEAVRQLRGNALGRAPARRPRTVLVQGSGGMLAAGS
VTILASEL
>SEQF1086_CAE40406.1 MaoC family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARINNRIDQTFDEIEVGKVFRSGGRTITETDVVNFCALTGNWIEIHSNVQYASKTRFGKRLVQGSLTYSIVTGLIQFGL
GIQANYGIDNMRFLAPVSIGDTIYAVCEVMRKKEKDEKYGVITFFMKAVNQDGTVVQKGEWSLLMLRRREDLDALVGASL
PEVAA
>SEQF1086_CAE40407.1 putative transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRQVDFFTLRLFLSAVEEGQIGRAALRENIAPSAATKRIQELEDVVGLRLLERTPKGVILSPAGEVLVRHIRQIFTNVDE
LRAELSAFSEGVRGEVSVASARSIIAPYLAHEFGAYIRDYPLVDLIVREVENAAIVQAVAQGDADIGVFAAAPALDLSGV
DVMPYRQDRMVVVMSHGHRLAQRQSVTFEDLLSENLIVPAALHMALRTAADRLGREFEPKYGVTSAGVAISLAQEGLGVT
IQPECLLDLKVFEHAVGVELAESWANRSIHIATARGRAAGPAANLLLKQLLDRPRALSSVSD
>SEQF1086_CAE40408.1 putative enoyl-CoA hydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRYEDFEFLLCEPQDDGVMLVTLNRPDAMNATNDRMHWELTRIWGVVNDDPGVKAVVVTGAGERAFSAGGDLSVVEAMSN
SHETTMRVMKEASDIVYNMLACDKPIISAINGTAVGAGLADVSVMAEDAKLTDGHARLGVSAGDHAAIIWPILCGMSKAK
YYLMTADFVDGKEAERIGLVTFCAPRAEVLPRSLAIAAKLARGSQTAIRATKKSLNNWMRTAGPAFDNSLALEMLCFLGP
DVKEGLAALRDKRAPDFPSARLP
>SEQF1086_CAE40409.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAAPSPSTPPGNCPPLEQAVVRFIQDLKYEHIDAAALAGVNRLMRDQLALQVGISAMPWSRQLLDYALTQQRPGVSRVS
ASTLKMSAADAAFVNGSYGHGFEYDDAHGPSYSHPGSCVIPAALAIGEELGSSLQDVITAMVAGYEVYTRIGLLAAPDLL
RRGYHPHCTLSNFGAAAVAAKLRGFDAETTLHALAIALSHTSGTTEYSSTGGSIKRIHAGLGTRNGMMAADMARAGITGP
RAFLSGNKGFFKTFLQRPAGEAPQQRFAPGEPFQVATVWLKAYCACYCTHAYIDALRPYAERRGEIADIHLKITPHFNVV
VGTANACAYAPTNIEHVQFSLPIQAALAVQGLGNGYRIHRDYLDGRVDMAPVIAMARGIRITEDPGLETRHPGKFVADVT
VTFRDGSAEHVFVADPIGTDTNPMPEHEQDAKFMELTADALGQARARALLAALRKMDPTMKAADLMALCEPAP
>SEQF1086_CAE40410.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE40411.1 probable transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDHDASFSLKDIAVPAFGPSILYGVSNGAILPVVALTARELGASLATSGLIVGLVGIGSLVSNIPAAMFTSRHGERRSM
VGAAALSVVALLLCIFAGTLWMLATGVFMVGMASSVFLLARQGYMIDAVPAYMRARALSTLAGTMRIGVFAGPFAGAALI
HFMGLQGAYWVAAVAMTGAGLIAWFAPDMAPPRRRGEAAVARPRLLDVARAHRQVYLTLGLGILLVSAVRASRQVVIPLW
ADHLGVNPATTSLIYGLVAAIDMSVFYPAGMLMDRRGRLWVAVPSTLLMGCALIGTSLTSGVAGFVIVAMMLGMGNGIGS
GIVMTLGADAAPASGRTEFLGLWRLMSDLGGSLGPVALSGITALVSLAAGVAAMGGVGLAAAAVFWHWLPRGQAPR
>SEQF1086_CAE40412.1 glycyl-tRNA synthetase alpha chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLTFQQIILTLQDYWDKQGCALLQPYDMEVGAGTSHTATFLRAIGPEPWRAAYVQPSRRPKDGRYGENPNRLQHYYQYQV
VLKPAPPEILDLYIGSLKALGIDPTQHDIRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLDCTPTTGEITY
GLERLAMYLQDVESVYDLVWTEGANGNRVYYRDVFHQNEVEQSTYNFEHASADMLFAHFNDYEAEAKRLMDVPLALPAYE
AALKAAHTFNMLDARGAISVTERAAYIGRIRNLSRAVAQAYYDSRERLGFPMLAGRKAAGEAA
>SEQF1086_CAE40413.1 glycyl-tRNA synthetase beta chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTDIRPLLIELFTEELPPKALQKLGQAFAEGVRATLARHHLLADGCAVEPFATPRRLAVRLSAVLAQAPEQAYAEKLMP
VKVGLDANGQPTAALAKKLAAKGLEGLDPATLERESDGKQEYLVARGTAAGAQLAVGLQEGLDAAIDGLPIPKVMRYQLA
DGQTTVKFVRPAHGLVALFGADIVPIAALGLQAGRATQGHRFQSNGAIELATAQGYEADLAERGRVIASFEARRAEISRL
LDEHAQRLGATLGDDPEVTALLDEVTALVEHPTVYVGQFEEQFLQVPQECLILTMRLNQKYFPLFDPASGKLTHRFLIVS
NMQVADPANIVEGNQRVVRPRLADAQFFFETDRKTPLAARVEQLGSIVYHNKLGTQLERVERVRAIARGIATALGGDAAH
CDRAALLAKADLGSNMVGEFPELQGIMGAYYAQGDGEPADVVTALRTQYRNRYDAPVDAATLTAATLFIAERIETLVGIW
SIGLAPTGERDPFGLRRAALGLISAFEQLAAGGWLKVSEDGPLSLDGLLALAAQAFPDGKIGADTLAEVRAFIYERYRNQ
LIGEHDRNAVEAVIALAPPLHQVAARVRAVAAFAQLPAAASLAAANKRIGNLLKKAEGEIGAVDAALLQDPAEKALAEAV
AQLRPQARAQLQAGDFAASLATLAQAREPVDAFFADVMVMADDAALRANRLALLGQLHGLMNQVADISRLAQ
>SEQF1086_CAE40414.1 putative haloacid dehalogenase-like hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLIILDRDGVVNQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMG
GVVDAIFMCPHGPDDGCACRKPLPGMYRDIARRYDVDLAGVPAVGDSLRDLQAAAQAGCAPWLVQTGNGRKTLAQGGLPE
GTRVCEDLAAVAEQLLQEA
>SEQF1086_CAE40415.1 probable acyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAWLRSALYALFLIVTVIPYAFACILWAPLPLHWRYRLTVGWPRLAIWGARVICGIRWRIKGAENLPDGPAILLSKHQSA
WETLFFPAHMPREVCFVYKKELHMVPFFGWGLALLRMIPIDRAKGRDAFEQVVRQGQVRLDEGRWPLLFPEGTRVPPGKT
GRFKMGGALLASRTGARIIPVAHNAGECWRRNAFVKRPGLITVSIGPAIESQDVAPEVLNAKVQAWIEGEMRVLNPERYG
QA
>SEQF1086_CAE40416.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAKPDQLELLFDVAPPADPASAAPRKTPKARPAPPAPAAIATPCPDPLPPGARWREVHTEQQPIGFVLLRSRRRSIGFVV
ADDGLRVTAPNWVTLEQIDDAVREKARWILAKLRDWHARKEQLAMAHTRWQAGGELPYLGKRIVLGLGAERRQACLSGDA
DAPCDGDTLWLALPVDADQARIRDAAQAWLQQRAGAWFGARLAHFLQLTGLRIRRWRLSSAATRWGSCTSDGNIMLNWRL
IHFAPAIIDYVIAHELAHLREMNHSQDFWTEVGHILPGFEDAKNVLRRHDPATLPQF
>SEQF1086_CAE40417.1 lactoylglutathione lyase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRLLHTMLRVGNLDKSIDFYTSVLGMRELRRKDYPDGRFTLAFVGYQDESEAAAIELTHNWDTEKYDLGTGYGHIAIEVD
NAYEACDKVKEKGGKVTREAGPMKHGTTVIAFVEDPDGYKIEFIQKKGRND
>SEQF1086_CAE40418.1 peptide deformylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIHAILKMGDPRLLRVAAPVERYDTPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIFGFERNDRYPDAPAVPRTIL
CNPVIEPLSDEMEDGWEGCLSVPGLRGLVPRYRHIRYSGYDPAGQRIEREAEGFHARVVQHECDHLIGRLYPTRIRDLTK
FGYTEVLFPEMDPNAD
>SEQF1086_CAE40420.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR
>SEQF1086_CAE40422.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MISTLFRFMLKKRVRILWQAGCAALLLAACSPSYNWREIDVADGRVRAAFPGRVQTDTRDLALAEVPLRFSLTSARVEQA
VFAIGHAPLPPEVAADPARRRALGEALARSLYANLGVQPPDPLPAPGADIEIHAPPGERDDWLLARVWATDDMLIEAVAA
GTRQTLPAERAREFIDAVELRR
>SEQF1086_CAE40423.1 transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPQRTTLTPRELDCLHWSALGKTSWETARILGIAARTVDFHLANACAKLGVANRRAAVARAVQCGLLPALTAAAPPHR
>SEQF1086_CAE40424.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLAVVQFYWSAVVLLLPLLACAGIGAYWAKRDYPFGGTFITMLVTTVTTPALVFHTFVTTQLDDRALLAIAGASLLALLA
CALACAGLLRLFGLPVRTLLPTAFVPNAGNLGLPVSQLAFGDAGLSAAVAFFAVNSFVTHTIAVRMLPGANTPGSWKSPV
LLASVAAVTLRALDIPVPDWLVATSRMLGAVTVPLMLLSLGHALALIPANGMRAGAVVAALRLAVGLAAGYAVVWLLGLP
DLLAGALALQMAMPCAVVSYMYARRYTDVGDIAAGAVLVSTVVFLLLAPALLWFTRQ
>SEQF1086_CAE40426.1 homoserine O-acetyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTNPVLNPALPAMAAAPVAATPSAVGSAGIVAPVFLRFDEPLPLASGQTLNGYELAIETYGTLNAQRTNAVLVCHALNAS
HHVAGVSADNPKDVGWWDNMVGPGKPVDTNRYFVIGVNNLGSCFGSTGPASINPATGRPWGAAFPVLTVEDWVRAQARVA
DHFGIERFAAVMGGSLGGMQALSWAITCPQRVANCVVVASTPRLSAQNIGFNEVARRAIITDPDFHGGDYYAHGTVPGRG
LSVARMIGHITYLSDDDMAEKFGRTRREPAADGAYRYGYDVEFEVESYLRYQGEKFSRYFDANTYLLITRALDYFDPARA
TGGDLARALAPATADFLLVSFSTDWRFPPERSREMVRALLKNGSPVTYAEIDAPHGHDAFLLDDARYHAVVRGYYERIAR
ELGLNGAVAPEGNSA
>SEQF1086_CAE40427.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSPVSARFEPAALRPDLARIAGWIEPGSRVLDLGCGDGALLAYLRDHRQVRGAGVEIDDNYVIACVQRGVEVIQQNLEDG
LALFDDQQFDTVVLSQTLQSMHRTEHILREMARVARHGVVSFPNFGYWPHGWSILRGRMPVTGQMPYQWYNTPNIHLCTL
RDFEDLAGTLGLRILQRATFNEGREVRVFPSWRSTLALYRFAAS
>SEQF1086_CAE40428.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE40429.1 putative integral membrane signal transducer protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAPLLVLGFASGLPLALSSGTLQAWATVENVSLQSIGFLTLAGTAYTLKFLWAPLIDRYVPPFLGRRRGWMLLTQVLLAA
AIMVMGMLSPGSALLPLALVAVLVAFLSASQDIAFDAYSTDVLRQEERGAGAAMRVMGYRLAMIVSGGLALIVADRWLGW
GNTYVLMGGLMLACALGTLWAPEPERPANPPRDLGAAVVEPFREFFSRRGAIDMLLLIVLYKLGDAFAGALSTTFLLRGA
GFSATEVGTVNKVLGLAATIVGALAGGSIMTRWGLYRSLMAFGLLQAVSNLGYWLIAVSPKNLYLMGLAVGVENLCGGLG
TASFVALLMAMCRQQFSATQFALLSALAAVGRTYLAGPLTPVLVEWLDWPGFFIVTVLIALPGLWLLRLRRNVIDELDAQ
TAR
>SEQF1086_CAE40431.1 putative aspartate/glutamate racemase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPSDDDKQFEGRFLGVLGGMGPMAGASFMQRLVALTEAACDQQHVPAILWNDPRVPDRPAGQSGQGADPLPWMRHGIRRL
EQAGATAIAIPCNTAHVWYPQLAQSASVPVLHIVEAVLDDLRRQGIHAGRVGLLATATTLRLGLYQHEMLAQGYEPVVPP
VDLIDGLCAQSIRLVKQNLLPQALPPALACIDSLRAMGVDAIVLGCTELPLALPHALRAELGVAMTDSIDALALAGLGWY
RRGG
>SEQF1086_CAE40433.1 glutamate/aspartate transport system permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNEFDFDVIGRSLGYLFRDGMVFTLKLTFLSTAMGLALGTLLAMCRLSGIKPLSAVAAAYVNGLRALPLILVIFWFYFLV
PYIGGWLTGAGRPLQVGGFTSALITFTLFEAAYFCEIMRAGIQSIPRGQTSAAYAIGLNYWQTMAYVVLPQALRNMAPVL
LTQTIVLFQDTSLVYVLSLTDFLGAGINVAQRDNRLVEMYLFVAAVYFVMSFAASRFVHYLQQRNTMAA
>SEQF1086_CAE40434.1 glutamate/aspartate transport system permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPSRLRSLDTTMNYNWNWHIFLEMSPTGGIYLGTLLTGMAWTLGTAALAWILALGIGIVVGVARTTQSKWARILGATYVE
FFRNIPLLVQMFLWYFVVPEILPVQLGDAIKSIPPPWGIFIPAVLCLGFYTSSRVAEQVRAGIESRPARQRMAATALGMR
PSQVYRYVLLPTSFRIILPPLTSELLNLIKNTSVAFTIGLLELVGAARSMQEFSFQVFEAFAGATLCYFLLNLIVLRAMR
YIETRLAVPGFIGPVSATTKLAPT
>SEQF1086_CAE40435.1 amino-acid ABC transporter binding protein precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKISTVFFAALVGVAASAPAHAEGRLDKIKSSGTITIGHRDASIPFSYLDDKQKPIGYSMEICEKAVEAIKAKLGMAQIK
VNLVPVTSSTRIPLVANGTVDLVCGSATNTVERQQQVAFAPTTFVTATRFAAKKSSNLKKLDDMKGKTVVSTAGTSNIRW
LTQANEKDSLDMRIIPTKDHPAAMLTVANGRAAAFFMDDVLLAGLVATERKPDEWMISEDTYTVEPYALILPKDDPAFKK
VVDDTVTGMMRDGSLAKLYKKWFESPIPPRNVNLHLPMSAALQRVIANPTDSADPATYR
>SEQF1086_CAE40436.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE40438.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATKSLRRQDLEVHLGSTGQVVGRLYLGSGKRSAFSYDERWLRDARFFTLSPDLLPVLSVQHPQEVFFRALEDTAPDSWG
ERVIRRAHARLRQQDGETPPLEPVDFLMWVDDEARVGALRLFDPHAKVYLRSGATPGHVPPLVELDKVVQAARALEAGTE
TARDLQYLLGQGTSLGGARPKSSVRDTDGRLALGKFPSQADRRDVIRGEVLAMHLAAKAGIKVAAARVELIGGTAVAIIR
RFDRTDDGGRIPYVSAATMLQSDGRDTVHAYTELVDVLLREGADPIADIHQLWRRLVLNFLICNTDDHLRNTGFLYDSRN
HGWRLSPAFDLNPMPGDRRESKTWLTEDSGPIESRDMLMEGAPYFRLAAEEAAAIWTEVAQAVGSWRVVARGLGMQGTDL
VDFEPAFA
>SEQF1086_CAE40439.1 putative DNA-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRMPTSEQRNCSPRVAMPRPVERALQRLGQDISTARRVRRLSQEDLAQRVGTSLSTVRRMEDGHPGTALHTFLRALHVLG
RLDDVLRVMATENDVLGMELVREQLPQRVRTVRGSKPRVGHSAAVKEGASDDADELEGF
>SEQF1086_CAE40440.1 hypothetical protein BP0062 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDTELPSLEHADGGAVIGGAVPELTRAFRMPEAEFRCDFLWDSRLVSRPRLLGAFRIRQIAALMLDWLSSEAEVLKRIVA
NRQALASTMYFALDSAFPYPEHAFAQSVYVGINIPRAKLQLSPDQRPGDVDCLIVPFSDNEILLERTIAIEAKIVRPSIS
NPGRNANTMGRAQVRGLLCYGFPFVGLVHISVPESMPSHMHWEVPEISDIAGSNGELIETGEYFIFDPFPLASARRQEGR
VLALGLPVEVGYRVIALTLSNNGERFCGFTIGEARAGARNPVVSHRVLEAVRMLLTTEPHLFEVVHWFNEVGT
>SEQF1086_CAE40441.1 putative transposase (partial), partial [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
KGIAIRYIQPGKPNQNAFIERFNRTYRTEVLDAHLFANLELVQAITDQWLVDYNQYPSAQIAGRPPADAIHAPVNPRSGR
LSDNVYLTGGGLRQQTLMAHCLCLDQGPFERPSWSLF
>SEQF1086_CAE40442.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGRALAEQLGRELKQPVIVVNRSGAAGNIGAASVARADNDGYTLLMTSAPFAIAPAIFPDLSFHPIKDFTAITQISMVPL
LVVTRANSPLNSISDLVAAAKQNEDSISFATFGVASPPHLAGQKIQELAGMKMLHIPYKGGSEAITELLSGQVSIGILDV
ISMMPMVKDGKLKALAITGPVRAQALPDVPTLVEAGISYDDVGWFGLFAPAGLSPAITQILNVAVNKILAKPEMQKLVVA
SSTVPITPSTSPGEWQALFNENVRAWGASATEALKEDE
>SEQF1086_CAE40443.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARKLLMLVGDYVEDYEVMVPFQAFQALGYQVDAVCPDKAAGDYVMTAVHDFEGAQTYSEKPGHRFTLNASFDQIEMEKY
DGLVIPGGRAPEYLRLNSKLLALVRYFFEAEKPVACICHGIQILSTAGVLEGYKCACYNTCAPEVTAAGGTYVDIPMDEA
ITDRNLVTAFAWPSHPAWIAQFATLLGTKITHN
>SEQF1086_CAE40444.1 putative ferredoxin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVKACEENEIREGDIVEKKINGLDIILMRNGEQFFAAQAICPHMDEKLCNGLFKKTKLICTKHLWQWDLETGKPLGAAEK
PIQIYKTTVKEGIVYVGVDN
>SEQF1086_CAE40445.1 oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMQQEQRILFKNDVGDYAAVAAGEESVLQAGLRQSVPLNYHCASGSCGSCKARLIQGALKVYTGTDFIQVSHSAGQACEC
PEVHLCQSHAVSDCVFEALYDKNVPPDLAAPKHYAASLNDVRPLGSGLYRLLVDLDDSIRFLPGQYVMLATKAGGRARAY
SVANFAQDSRQLEFILSCNPNGAMSPQLCDINNIGMQLQGYGPLGKAYIRPKKDNELVMLVGGSGVSVALSTLEWAISSH
YIDDRHLTIFWGVRDTSPIDLIGVFNRYAAVHSNLRVAVCSDISPSVQDRGRFPYIEFFTGYPADHIVNDASISWEGKEV
YISGPPPMVDHTIRQLMINTEIDALDIECDSFV
>SEQF1086_CAE40446.1 integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAATSYWVIDYPLMSMGLTSIDSLKNYTFLAVPLFIATGDLLTAGGVSQQLIKFSRAVIRAVPGRTAATSVLASGMFCAI
SGSSAAAAATMGKLMAPEFKRAQIPMRRGGATVAAGGILGGLIPPSTIIIIYSLTVNVSPVELNLAAILPGILILLFIFF
VSIMRTRQYEPASKSTDGYFKEVGTSVLGATPAFIAIALLFVGLYSGLFSPTEAAGVVTIYCAVIGLYWSSQFGIRDIPK
ILMESASVTGIIGPIVVFSIQFQQILSVMEIPDLILVQLVELSSAYGATVTLAVMMGIVLLFGTFMEVIAVILILAPIFA
PIATEIGMNGVHWGMIFIIGASIGFISPPHGLNLFITSMTMKIDYGELMAEIVRMIIPILVAWLIVAAFPYISLVFV
>SEQF1086_CAE40448.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTHSNHNSMRRSTLRKLTGLGMGTILTAGAGAAAVLAPFNSFAKSEAKAAYRFRFGTIYTPSAAEYTAPGIYDFVERVQR
KSDGEIAIQLIDKAQACSEDQCAQRVMSGILHMGSSTFQNTGATMPYSVALDWPFLWKSRVAYHNFLLSKESNRLYRDVL
RNKYGVVPLYASGSMRNIMMGKKYSEAADITSPDALNGAKIRITNSEMISNFAKSMGMAPIPLAWGELLEGLKSGLVDAT
ETYPSAAAGFGMYSVLSQDIDVQFCPGYSMIFMAAKTFDKLPERLQELIYESAYESMVEAYQTSIIAESTLVGIGPNPSP
DSAYQRGKIRQIKLSHEQHAAFKESGSVENNSQLYANLRKQLDDIAGIDVYGALSEYAKNTSSTELMAEKWWT
>SEQF1086_CAE40450.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE40451.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSMKMEEDIKRWTAKRKSALVLDIIQGKTTVAEASRQYDLSPSEVEQWVDDGKRGMENALRANPQDVREQYERQLKDMQE
AYGEAMLELRARKKLQSLLGEDEK
>SEQF1086_CAE40453.1 heat shock protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQTTTTSASETLGFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDACDKLRFEAIDQPGLLEGDGELAIRVGYDKAAR
TITISDNGIGLSRDEAVANLGTIARSGTREFFSQLTGDKQKDAQLIGQFGVGFYSSFIVADKVTVLSRRAGLAANEAIRW
ESDGQGEFSIAPAEKAGRGTDVVLHLRADEDELLNGWKLREILRRYSDHISLPIRMAKEDWDAEKGEQVKGDELETVNQA
NALWTRNKSDITDEQYREFYKTVSHDYDDPLAWTHNRVEGRSEYTQLLYVPKHAPFDLWDRDARRGVKLYVKRVFIMDDA
EQLLPSYLRFVRGVIDSADLPLNVSREILQESRDVRAIREGSAKRVLSLLEDMAENKAEDYATFWTEFGQVLKEGTGEDA
ANRERIARLLRFASTHDGEQAQTVSFADYVGRMKDGQDKIYYVTADTFTAAANSPHLEIFRKKGIEVLLLSDRVDEWMLS
YLREFDGKSLVSVAKGGLDLAELADEEEKKRQSEVAETFKPLVERLQQALAEQVKEVRVTQRLVDSPACVVVGQNELSPH
LLRMLKAAGQEAPEVKPVLEINPDHALVARIRDASDAEFGDWAALLLDQALLAEGAQIADPAAFVKRLNGLLLKA
>SEQF1086_CAE40454.1 probable glutathione S-transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLKIWGRLSSVNVQKVMWAVRELALPHTFIEAGGQFGGLDTPEYLRMNPNRKVPLIDDGGFILWESNAIVRYLGARYGEG
AISPADPCVRADADRWMDWQTTEWQPSMLAAFMGLVRTAPEQRDAAAIEASARQAGKIALMLENALAGRDFIAGPQFSMG
DIALGCAAHRWLGLPVERPATPHISAWYRRLMMRPATQGILTLPLT
>SEQF1086_CAE40455.1 N-acetylmuramoyl-L-alanine amidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQRLLLDRHGWLIPGPAVTRAPSPNVNARPAGTQISLLVIHNISLPPSQFGGPYVADLFLNRLDYSADPWLERLRGLHVS
AHFFIRRDGAVIQFAATEARAWHAGVSRFRGRDNCNDFSIGIELEGTDILPYADAQYATLARLAQVLRARYPLADARGHE
HIAPGRKTDPGRAFNWVRFGRESGFPRRNLPPV
>SEQF1086_CAE40456.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGKLIFWFVVILAVLFIARLAGARAASKRAPRAEPPRPAQDAASQPMVRCAHCGVHLPRSEAVLLGGQTWCSSDHARRGA
ERG
>SEQF1086_CAE40457.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSGIVFHAVAALAYAVLAGSLWRRLQGRGSVDQASKLTRTGLLGALALHGVALQQAMLGTQHLYIGWALALSAAVWLGL
VVFWLESLLIRIDGLQLLLLPAAAIVTAIAALFPQAQLVPHANNPWLRAHLLIALAAYGLITIAALHAMLMALLDRHLHR
PLDAPAERSIVGRVLDAQPPLLVQERLLFRVIWIGFVVLTLAVGSGSVASITLTGKFLPFDHKTIFTLLSWATFGVLLLG
RHICGWRGRVALRWTLTGFAFLILAYTGSRFVLEVILHRG
>SEQF1086_CAE40458.1 signal recognition particle protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLDNLTQRLSRVVKTLRGEARLTEANTQEMLREVRMALLEADVALPVVRDFVARVKEKALGEEVAGSLSPGQALVGVVHK
ELTSLMGGDLGEHAGELSLATQPPAVILMAGLQGAGKTTTTGKLARWLSEGQHVQGGRKTGKKKVLVVSADVYRPAAIEQ
LKTVAAQVGVDFLPSDVSQKPEDIARNAIDHARRHHYDVLIVDTAGRLGIDEAMMREIRALHDLVKPIETLFVVDAMQGQ
DAVNTARAFGDALPLTGVVLTKLDGDARGGAALSVRHVTGKPLKFVGVSEKLDGLEPFHPERMAQRVLGMGDIVSLVEQA
QKNIDIAEAQKLASKIKSGNKFDLNDFRDQLDQVKKLGDMGSLLEKLPAQLQQAAGQLQGGQAEKQLRRTEGILNSMTPG
ERAKPELIKASRKRRIAAGAGVPVQEVNRLLSQFEQMQGMMKQMKKGGMAKMMRAMGGMKGLGRFGGMR
>SEQF1086_CAE40459.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE40461.1 lipopolysaccharide biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLPYAIRRLFVDLPRPFKQMLAIVLDAVILLGAFHLALWLRFELFFLTDQYLFLSLLACAGGIAALAAFGVYLYILRYM
SERVLAAILGGIVVSVMVVTAGNTFLQLATISRGVLVLYAALALVGLIGVRLIARKLLFPADHHMADPRTPVLIYGAGGA
GSQLAMALRTGPHYRPVAMLDDDKRKHRLVVNGLRVYPPEQLPKLIDRHNIRQLLIAMPSAPPKQIRSIVEAAEPYRLRI
RLVPSMRELIDPTNGVRLRDVQVEDLLGRDPVAPIDTLLGRCVTDRVVMVTGAGGSIGSELCRQILALRPRKLVLFEIAE
PALYAIEQDLRQRIGERNIEIAGVLGSVRDAAHCLAQLQEHGVQTIYHAAAYKHVPIVEHNVSEGIRTNAFGTLNMAETA
IQAGVLDFVLISTDKAVRPTNVMGASKRLAELILQAHAQIQDKTRFSMVRFGNVLGSSGSVVPLFRRQILEGGPITLTHP
EITRYFMTIPEAAQLVLQAGAMGESGSVFVLDMGEPVLIRELAERMVRLYGLTVKNSDQPDGDIEIRITGLRPGEKLYEE
LLIGEDSRETLHPRIMRATEYSLPYETLMGQLRMLDRSLQMCSPRQAAELLGQIVREYASVTYA
>SEQF1086_CAE40463.1 lipopolysaccharide biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMTLLPLLVIASYSIIHLLEYLSYYARVAGRMAGKPVTGYAIQNATTTVTRFFYLALMPLLGFLVDKQVPTSLYLQMGLA
AMFGAALLSLLGYWLRYSWIALLTNAVRKRAGQPPLRVEEIRTALEAPASLPKKRIALLAAIVFLCYCLGVLLSYFFALV
FHEYRSTISQLSGLINGVATVLLTFVLEPRIAGIVDARPTHDVYHAIQAMLNGRLIAIGLLAPALFFGVCIGFV
>SEQF1086_CAE40464.1 putative glycosyl transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLSNVPSRQSPDFAQRTPARVALLGPARSIHTIRWANGLALRGLQVHLLSLETPDLSLYDERIVQYRLPWRAPLGYFLAA
PRLRALLKRIDPDLLNVHYATGYGLLARRARFSPVLLSAWGSDIYEFPNSSTWHKALLQRNLDHATALAATSHAMQREMR
GLTRRPIFVTPFGIDEALFQPAQSVQAPAADGPIVIGTVKALETHYGIDTLIQAFALLRQALAASQPGMAERLVLRIYGA
GSQLQRLRAQAQAAHIANQVEFKGRIPHAEVPEALRALDVYVALSRMDSFGVAILEACSCALPVVVSNADGPAEVVVDGK
TGYIVAREDAHAAADRLQELVLNPELRQRLGAAGRARVLSEYTWSKSLDMMLDAYTETARLYRATQPASV
>SEQF1086_CAE40465.1 probable sugar transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIKRLFDVVCSGLGLLALLPLLALIAIAIKLDSPGPVFFRQERVGKDGVPFRIHKLRSMSVRQDPQAGQITVGADPRITR
VGKWIRKWKLDELVQLIDVFTGSMSLVGPRPEVPRYVVLYPDALRDLVLSVRPGITDPASIRFRNENEILGQSSDPERTY
REIILPEKLRIQAEYVQTRTFLGDLKIIAHTLLAVAR
>SEQF1086_CAE40466.1 lipopolysaccharide biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPPAARLSLLQRSSTMSDFLPFALPDIGEAEIQAVTESMRSGWLTTGPNAREFEREFAAYIGADVEAVAVNSATAGLHLA
LEAIGVGPGDEVITTTHTFTASAEVARYLGAEPVLVDIDPATLCISPAAIERAITPRTRAIVPVHYGGLSCDMDSILEIA
RKHGLKVIEDAAHALPASWQGRRIGSLESDLTVYSFYATKTLATGEGGMVVTRDPALAKRCRVMRLHGIDRDAFDRFTSK
KPAWYYEIVAPGFKYNMTDTAAAMGRVQLQRVQQMRDRRAQIAAAYDQAFADLPLTLPPGPGRTPGVERVAHRDDDEHSW
HLYAIRIHPQAPLKCDDFIVRMTENGIGCSVHYVPLHLQPYWRDRYGLTPDMYPHSQAAFEGMASLPIYSRMTDADVQRV
IASVRQLLRP
>SEQF1086_CAE40467.1 probable glycosyl transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNILLINHYAGSPRYGMEFRPYYFGREWIGHGHQVKVAASTISHIRARAPQAGGRLTRENVDGIEYLWYATLPYQGNGAR
RLLNMLQFSARLYGLRRDLGGWRPDIVIASSTHPYDVLPAARLARQTGARLVFEVHDLWPLTPRLLGGFKAWHPMIASMQ
YAEDYAYRHADLTVSMLPCALPYMRERGLDPRRYAHVPNGVPVTEYSSPDFDNPDYLRVRAQIRQLREQCDFVLAYAGTH
GHANALDMLLQAMARLRDQPIGLLLLGDGPDKPELKRLAGQLGLRHIAFADPVPRPAVQAVMADIDAAYIGLRRSPLFQF
GVSPNKLFDYMLSACPVVQSIESGNDIVADARCGLSVPAEDPAALAAALHGLRTLPAAERQAMGRRGRDYVLARHDYPVL
AQQFLDAVQSVTPRRAASR
>SEQF1086_CAE40468.1 UDP-N-acetylglucosamine 2-epimerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPKKILTVLGARPQFIKASVVSAAIAQHPELTEVVVHTGQHFDANMSDVFFDELGMQTPAHQLDIHGGGHGDMTGRMLVA
LEQVMQAEKPDVVLVYGDTNSTLAGALAAVKLHIPVAHVEAGLRSFNLRMPEEVNRILTDRISRWLFTPTDSATRHLAAE
GQSGEKVVQVGDVMYDVALHHGARVTAEGRALAAHGLKPGGYVLATIHRAENTDDAQRLTTIVRALQALAAERQVVWPLH
PRTWGILARLGLLDELASTVTLLEPVGYLDMVQLEKYAALIATDSGGVQKEAFFHRIPCVTLRDETEWTELVDAGWNRLA
PPVSSAVVAQAVQDALREQPRDVQPYGDGQAARRIVDALAAH
>SEQF1086_CAE40469.1 lipopolysaccharide biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQFIDLKTQYQALRDTINPRIQAVLDHGQFIMGPEVKELEAALCAYTGAKHCITVASGTEALLISLMALGVKAGDEVITT
SFTFVATAEVIALLGAKPVFVDVEPDTCNIKVSEIEAKITPRTKAIIPVSLYGQCGDMDEVNAVAARHGLPVIEDAAQSF
GATYKGRKSCNLSTIGCTSFFPSKPLGCYGDGGALFTNDDELAQAMREIRVHGQSGRYYHARIGVGGRMDTLQCAVVLGK
LERFDWEIAQRIKIGARYQQLLADLPGGACTVTVRPDRDSVWAQFTVMVPNREAVIAQLKEAGIPTAVHYPRPIHAQPAY
EQYAEGAGATPVSDDLAARVMSLPMHPDLDEATQDKIVAALRQALN
>SEQF1086_CAE40470.1 probable acetyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTIHPTAIVDEGARIGANSRIWHWVHICGGAEIGAGCSLGQNVFVGNRVRIGDRVKIQNNVSVYDNVFLEDDVFCGPSM
VFTNVYNPRAAIERKNEYRDTLVRQGATLGANCTIVCGATVGRYAFVGAGAVVNKDVPDFALVVGVPARQIGWMSRHGEQ
LDLPLAGNGQARCPHTGDLYILENGVCRLGE
>SEQF1086_CAE40471.1 probable oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSLPITDRKIRFGLVGCGRISKNHIGAIAQHGDRAELVEICDTNPEALQAAEAATGARPFSSLSDMLAQGNADALVLAT
PSGLHPWQAIEVAQAGRHVVSEKPMATRWEDGKRMVKACDEAGVRLFVVKQNRRNATLQLVKKAIEQGRFGRIYMVTVNV
FWTRPQEYYDAARWRGKWEWDGGAFMNQASHYVDLLDWLVGPVESVYAYTATLARRIEAEDTGVAALRWRHGAMGSINVT
MLTYPQNLEGSITILGEKGTVRVGGVAVNRIDEWKFAEPHPDDDKIREANYETTSVYGFGHPLYYDNVINCLRGDCEPET
DGREGLQSLALLTAIYRSARDGVRIPLPLD
>SEQF1086_CAE40472.1 probable heptosyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPNRILIVRTSSLGDLVHMLPAISDIARYVPDTQIDWVAEEAFADIPKWHPAVNEVIKVAHRRWRKAWWSEPVRQERRAL
AERLRSVSYDVVLDMQGLLKSAWLVRQTRGVRHGLDWRSAREPLVSLFYNVRHRVEFWQPAVVRQRKLAALTFGYNYAGS
PDFGLQAFGRAAQADDAPADPGRRMLHLAADRGYAVIMPSASRDDKLWPEDDWRAVFRRLQDAGCALRLLAGNEQEAERA
RVLVAGMEGVEVLPRMDLTSVAQVLAGARLMVGLDSGLTHLSAALGRPTIGIYRASTPVRTPLVGPSYTASLGDRGASPS
REAVLASVEQALAAA
>SEQF1086_CAE40473.1 3-deoxy-D-manno-octulosonic-acid transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGRGVYTLALRGLAPLIWLWMWRRARRAGGQWELFAPARFGRAGARAPAPLAAPVWVHAVSLGETRAAQPLVQALLERGL
PVLLTHTTATGRAEGERLFGAAIGRGQLQQAWLPYDFPGATRRFLARHAPRCGLLMEREVWPNLLAAARAQGVPMALVSA
RFSASSLRQAGWLGQALREALAGLDRVLAQTDEDGARLCQAGANAYTVTGSLKFDVALPEAQLRVGHAWAGATGRPVIAL
ASTREGEDAMFIEAIGALQAHRAATPRPLILLIPRHPQRFDEAAAQLQAAGLAYARRSAGSGEPGPHIDVLLGDTLGEMP
FYYAAADVAIVGGSFARLGGQNLIEACAAGTPVIVGPHTFNFKDAARDAIAAGAALRAPDARTALDWALQLLAEPARRQA
MSEAARAWTAAHAGATRRTLDALEDWLG
>SEQF1086_CAE40474.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRILFLLIVAANLWVYALGQGWLGLRPADEGRDAARLNQEMKADQVKVLRP
>SEQF1086_CAE40475.1 Bvg accessory factor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIILIDSGNSRLKVGWFDPDAPQAAREPAPVAFDNLDLDALGRWLATLPRRPQRALGVNVAGLARGEAIAATLRAGGCDI
RWLRAQPLAMGLRNGYRNPDQLGADRWACMVGVLARQPSVHPPLLVASFGTATTLDTIGPDNVFPGGLILPGPAMMRGAL
AYGTAHLPLADGLVADYPIDTHQAIASGIAAAQAGAIVRQWLAGRQRYGQAPEIYVAGGGWPEVRQEAERLLAVTGAAFG
ATPQPTYLDSPVLDGLAALAAQGAPTA
>SEQF1086_CAE40476.1 putative biotin protein ligase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGAITIAPMSAEVRSLSLPEPAALARAIAARLPAFRDISWVGSTGSTNADLLARARAGGGARPCLLGAHLQETGRGRAGR
PWQNRVGAALMFSCAFDVDLPPSQLPALSPLAGMAACEALRQLVGQPAGLLVKWPNDVQWHDAKLAGVLVESVRNPAGTG
HAVVIGMGLNLHGGDALSQALQRSVADWNDVAGPGEKGPDAAADLVAAVARAWQDAAHTLQQEGFGAFGARFARVDALAG
RPVNVIDRGEILYTGAASGVDDHGRLLVQAADGMRPVSVGEISIRPQA
>SEQF1086_CAE40477.1 putative integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPSLPSTAGAATLSLTLDHGVCHVSGDWSMQALAAPGEVERRRAALARVDPDQRWDLRGVERLDTIGAHLLWGAWGQQLP
ERVRWSDGQREVFQTLQRNRGEALPAPAPADRWGWLRAIGDAVFDAGRNGRALVIMFGQLVLDLGAFLRRPSRGPWREIS
AQVYRTGAQALGITALVGFLIGVVLSYLSAQQLQMFGADRFIVRLLGVSIVRELGPVLAAILVAGRSGSAITAQIGVMRV
TQELDAMLVMGISHGQRLILPRVIALAITMPLLVVWTDAMALLGGMLAAQMQLGVSAQWFLTSLPDAISLTNYWIGMFKG
VSFGILIALVACHFGLCIQPNTESLGRGTTTSVVTSITGVILVDALYAVIFSSIGI
>SEQF1086_CAE40478.1 probable ATP-binding component of ABC transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGSVAQQNLFSATDLAVAPVIAVRGLRTAFGDHVVHDNLDLSVYPGEILALVGGSGTGKTVLLRQIIGLERPAAGTIEVL
GRRVQELEPAERRRLSHRWGMLFQAGALFSSLSVFDNVALPLRELRTVPEDLVCDVVMCRLAMVGLTSKDADKRPADLSG
GMVKRVALARALSLDPELLFLDEPTAGLDPLRSDEFVDLVRSLHRQLGFTVVMVTHDLDTLLALATRVAVLADKRVIVCD
TVREVLKVDHPFIRSFFLGERGRRALGDLAPKETGNGKP
>SEQF1086_CAE40480.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDMKKAIIVLSALLLAGCGAGRMAAPPALFDLGADVAATPALPARQPIVLAFEAVPYLSDTGVIWRVGDSASPHAYARSR
WASAPAELVRQRLVERLSHQGPVLGAGMGAGLAQVQVTLTFEQVFAADGQASVGHVAMQAVLLQDRQVVGQVRIAREAPA
ATQDAAGGVQALRQATDAAADELAGWLAGRVAAAGARAGS
>SEQF1086_CAE40481.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSARTETQVFTGAAGSIDCAIDWPAHAPRGWALVLHPHSLQGGARDNKVVTTVARACVQHGLAAVRPNFRGVGESAGEFD
KSIGETEDMLALVAQVRERYPEFAASPWVLGGFSFGTAVAAQTYAALAASGDPSLPRALMLMGPAVNRFERSATEVPADT
LLVHGEVDDVVPLAEALEWARPRSLPVVVVPGASHFFHGKLLVLRQLVQDRLRIALD
>SEQF1086_CAE40482.1 putative penicillin-binding protein precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTLPDTAIAPVVLSRRVLASAVLAAMLAAAAPAGAQQQAAPATPVAAAAPAAGGAVGAVGDLAAVPVPTIAAKAWITVD
VNSGQVLAASNADMKVEPASLTKIMTAYVVFNALQEKRLTLEQQVPVSEHAWRTGGSRMFIEPRKPVTVDELNQGMIVQS
GNDASVALAEAVGGSESAFAALMNQEAQRLGMRNTHFMNSTGLPDPQHVTTARDLATLAAHLISDYPDYYHYYKQKSYTY
NKITQPNRNRLLWADPSVDGMKTGHTDSAGYCLVSTAMRGDRRILTVLVGADSEATRAEESLKLLNWSFQNFDTVKLYDQ
SQPGLDARVWEGKVENVKLGPPNPVWLAVPRGKAAEIKPVAQRTDPLVAPLTKGQQVGTLQLTLDGKTLRVEPLVVQEDV
ERAGFFGRMADTVKRWFQ
>SEQF1086_CAE40483.1 probable class IV aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPAPILSKELPMIPGMPGDSQVYLNGEFTRLDEAKISVLDRGFIFGDGIYEVVPVYDGKVFRMTEHLNRLDRSLAALRIA
APMDRAGWESVIAGLIARSAQPTCIIYLQVTRGVCKRDHAFPTEPITPTVFGMAAAFSPPGAAQRTQGLSAIAIDDERWL
HCEIKSVSLLGNVLAKQQAVDAGVDEVVQFRDGWLTEGSSTNIWVVSGGKLLAPPKNNLILEGIRYGLMGELAEAAGLPF
EARRISREEVLAADELMLTSATKEVLPIVRLDGKAVGAGKPGPVYEQLRAGYDARIAAL
>SEQF1086_CAE40484.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHNIPPEESLIEYPSDFPIKVMGKQHPEFAQTLTEVVLQFDPGFDPASVEMRPSKGGNYLGLTFTVRATSREQLDSLYRA
LHGHPMVSIVL
>SEQF1086_CAE40485.1 lipoate-protein ligase B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIKWLARPADYASVWDAMKTFTAARGPGTADEIWLCEHAPVYTLGQVGRPEHLLNPGLIPVVHCDRGGQVTYHGPGQVLA
YTLFDLRRAGLYVREYVDMLEQATLATLRELGLEQACRKPGAPGIYVPQPGGELAKIAALGVKVRNGYAYHGLALNIDMD
LSPFLGINPCGYEGLRTVDLAACGVRTSVERAGELLAAQLARAHGQAVQQRAAALAGVPG
>SEQF1086_CAE40486.1 lipoic acid synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTLVESPVPSNDSQAAAPAAYDPTQKQKSQAKTARIPIKVVAAEKLKKPEWIRVRAAAPGSRFYDIKRILREHNLHTVC
EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPLDTQEPENLARTIAALKLSYVVITSVDRDDLRDGGAAH
FVECIAKVREYSPDTRIEVLVPDFRGRLDRALHILNSGPPDVMNHNLETVPRLYKQARPGSDYAHSLKLLAEFKKLHPEV
PTKSGLMLGLGETDEEILQVMRDMREHNVDMLTIGQYLQPSEHHLPVLRYVHPDTFAMFEREAYAMGFTHAAVGAMVRSS
YHADQQAHAAGVN
>SEQF1086_CAE40487.1 dTDP-4-dehydrorhamnose 3,5-epimerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLTPLAIADVVLIEPQVFGDERGCFFESFNQDRLDAQLGRRIRFVQDNHSCSRAGVLRGLHYQILHPQAKLVRVVAGEA
YDVAVDLRRGSPTFGRWTGAYLSARNRHQLWIPEGFAHGFLALSDDTECLYKATDYYAPEHERCVRWDDPQLKVDWPLQG
QAPILSVKDRQGVALARADTYA
>SEQF1086_CAE40488.1 dTDP-4-dehydrorhamnose reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNILLLGRTGQIGDALLAHPPAWARLAALDRRQADLRDLGRLAAVLDAYAPRILINAAAYTEVDRAEAEPELALRINAQA
VAVMADYARRNNALLVHYSTDYVFDGKRARAYRETDAAHPLNAYGRSKLAGEQAIAASGCPHLILRTSWVYASHGANFVK
TILRLARTRAELSVVADQHGAPIWAGRIAAVTWQAIDAHRRRRLPDGLWHLSAGGHVSWHGLACHIVARARRAGLALSLD
PAHIRPVTAAQYPLPAPRPANSRLDCGALRDALEPELPDWQVDLDAVVDALAARAHTL
>SEQF1086_CAE40489.1 dTDP-glucose 4,6-dehydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSILVTGGAGFIGSNFVLGWLASGDEPVINLDLLTYAGNAANLAALRDDPRHLLVHGDIADAPLVRRLLREHRPRAIVNF
AAESHVDRAIRAPDAFVQTNVVGTFTLLEAARAYCTEQDAAAAAAFRFLHVSTDEVYGSLAPQAAPFTETHPYQPNNPYS
ASKAASDHMVRSYRHTYGLPAITTHCCNNYGPRQFPEKLIPLVIHHALAGRALPLYGDGMHVRDWLYVVDHCAALECVLR
DGQPGQTYNIGAHCERTNLEVVHAVCALLDQWRARPDGQPHAGGIAFIPERPGHDRRYAIDAGKIQRELGWRAATSFEAG
LRETVRWYLDHPQWVADIASGAYRHWLDTHYGT
>SEQF1086_CAE40490.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHN
>SEQF1086_CAE40492.1 cystathionine beta-lyase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDESRHIDTLLQHLGTAPFDPDTGAAPVNLPSMRASTVRFRDLAALEQAQRRKAGGDRAVTYGRMGMDTHAALEHVFKE
LEAGTHCYLASSGMGAVTMAFLSLLSAGEHALVADCVYGPVYELDNAVLKRMGIELTFFAPGDDLQALVRPNTRLLYVES
PGSLLFQMLDLPALAEFARRNQLVLATDNTWGSGYIYRPLELGAQVSVIAGTKYVGGHSDLMLGAVVTNDEAVAQRLNRT
QYAMGYSVSADDAWLALRGVRTLPIRMAQHARHAQRVCEFLQGRPEVARIYHPAWPQDPGHALWLRDCSGSNGMLTVELR
LSQPAARVFVESLQLFDIGFSWGGFESLVQLVTPGELARHRYWQGGGNALVRLHIGLESPEDVIADLTQALARAASA
>SEQF1086_CAE40493.1 thiol:disulfide interchange protein DsbA precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQSTTFTRLLAAAALGATTLFAPATQAQGAQQYVNINPPMPSDTPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVV
LKQVPIAFNAGMKPLQQLYYTLQALERPDLHPKVFTAIHTERKRLFDKKAMGEWAASQGVDRAKFDSVFDSFSVQTQVQH
ASQLAEAAHIDGTPAFAVGGRYMTSPVLAGNDYAGALKVVDQLIVQSRK
>SEQF1086_CAE40494.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATKRKSTRRSKERGSTMYGVLAGLLIGLIVAAAVAFYVTKAPMPFVDRATRQPDQGKLPDPRNAPDPNQGLYGRDGAAG
TPPTGPTATAPSPLPGVTPGAPSRQPDDLGALIATLPNLDRAPAPAATPAPAAKSAKPAAPAASATPAAPASGTYFLQAG
AYRVLEDAEALRARIILLGLPVVMQRAEVNGVQVNRVRVGPFGRLDDMNRARSRLGENDIKSAVVRQ
>SEQF1086_CAE40495.1 arginyl-tRNA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRGHLRQTPGRPPGGSARPAARQTCRRHLPFCRLPMLLEQQKQLISLIQAAVAQCLPEAQAQVQLERPKVAAHGDIATNV
AMQLAKPARRNPRELAQGIVDALMAQPQARELIQDAEIAGPGFINFRLTPAARQAVVQAVASQADAYGRAPRNGEKVLVE
FVSANPTGPLHVGHARQAALGDAICRLYDASGWDVTREFYYNDAGNQIDNLAISVQARGRGIAPDAPDYPADGYKGDYIV
EIARDFAARKSVQASDGQPVTATGDLDSLDDIRAFAVAYLRREQDLDLQAFGLAFDNYFLESSLYASGRVQETVDTLVAK
GHTYEEGGALWLRTTELGTGDDKDRVMRKSEGGYTYFVPDVAYHKVKWERGFHHAVNIQGSDHHGTVARVRAGLQGLAGI
PKDFPAYVLHKMVKVMRGGEEVKISKRAGSYVTMRDLIDWVGRDAVRYFLIQRRADTEFVFDIDLALSKSDENPVYYIQY
AHARICTMIGNSGASAAEIAQADTALLTAPSEYALLQRLAEFPQVVALAAQELAPHHVAFWLRDCASDFHAWYNAERVLV
DEPALKLARLRLAATTRQVLANGLALLGVSAPDRM
>SEQF1086_CAE40496.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYEIIRMGVRNMLITFHSKVAAEVLMRTDDAAPLLRAAGKSFRDAIPERGVFTADQLQSAITGLERAIAAADRSPPDDDE
PHPDKEPVHPIELAVGLHQRAFPLLDMMRKTAAAGADLTWEVSRGW
>SEQF1086_CAE40497.1 hypothetical protein BP0117 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRDAPAPPPGDPSMRSEVTVVFDARRTVDLSVDVEPSVQAAAAARDWFDSAWEMLGCEPLRPSGKVLLLDKILGVADAL
GYDTLSGDAKESREFAEQAALALGKARIVVDLPGLMVGH
>SEQF1086_CAE40498.1 transposase for IS1663 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF1086_CAE40499.1 inner membrane component of binding-protein-dependent transport system [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRTLDTLGAWLLGLLWILPLAYAAWAAFHPPAYATRFDLLAPLTLENFARAWNAAPFPRYFLNTFLLVTMVLAAQLVLS
TLAGYAFARFEFRGRDFVFMLVLLQLMVMPDVLLVENYRSMSLLGVRDTVFAVGLPYFASAFGIFLLRQTFKTVPRELEE
AARVEGASPWQVLMKVYVPLARPIYVAYGLVSVSHHWNNFLWPLIITNSVESRPLTVGLQVFSSTDQGIDWSVITAATLL
SAAPLLVGFLLFQRQFVQSFMRAGIR
>SEQF1086_CAE40500.1 inner membrane component of binding-protein-dependent transport system [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRTTQAVYGWLLLLPAVVLLAAFTHYPALATLWHSFFSTPKGSRPARFVGLENYALLRDDPVFWQSLWNNLWFALGTIP
TSIAIALAMALWVNGKLHGRGFLRMAYFTPTVLPMVAVANIWLFFYTPQYGLIAQVMQWFGLAGPNWLGSRDTALPALMM
VTVWKESGFFMIFYLAALQTVSPSLREAAMLEGASRWQYFRRVLWPLLMPTTLFVLVNALINAFRLVDHVVVMTRGGPDN
ASTLLLFYIYQVGFSFWDTAYAATLTVVLLAVLAATALIKFRWLDRRTHYQ
>SEQF1086_CAE40501.1 probable extracellular solute-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRIVLKTLAAGLAGAFLALPAQAQQPVEVEFYYPVAVGGPITKIVDDMVADFHKENPDIRIKPIYAGTYQDSIAKALTA
LKGGTPPQLAVLLSTDMFTLIDEDAIVPVDGLAKSDADKKWLGGFYDAFMQNSRTGGHVWGVPFQRSTIVMYYNKDLFKE
AGLDPERAPATWDELVEYGKKLTKKDANGNVSQWGIKIPSGGAFAYWLFQALTTPNDAILMNEEGSQVYLDKPAVVEAAQ
FWQDLSVKHGVMPKGTIDWGTTPKDFLEKKAAIVWTTTGNLTNIRKNADFPFGVAMMPKKKRGGSPTGGGNFYIFKSGTP
AQQQAALKFAQWATTPERAADWSIATGYVAVTPAAWQTERMKKYAQEVPAATMARDQLEVSVAEFSTHENQRVTKVLNDA
LQAALTGSKTPQQALTDAQREADRVLRSYK
>SEQF1086_CAE40502.1 sugar ABC transporter, ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSHLVLDDLTKQYGEAAAISGVSFTAPAGSFTVLLGPSGCGKSTTLRMIAGLDTPTSGRIRIGDRDVTDLPPAKRRISMV
FQSYALFPHLSVRENILFGLKVRKEPARDYERRLARVAGLLGLQALLDRKPAQLSGGQQQRVALGRAVISEAPVCLMDEP
LSNLDAQLRHDMRREIRALQQELGITMVYVTHDQTEAMSMADQVVLMRGGRIEQLDTPDGLYARPATEFAARFIGTPPMN
LIALDTHDGRPVVAGTQGPALANAPAGAVTLGLRPEHIRIDADGMPAVIESVEYFGADSVAVCRLGSCGGVAVRVNGHLR
SAPGTAVGLAWPDERQHFFAADAAVL
>SEQF1086_CAE40503.1 putative cAMP phosphodiesterase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLIAQISDLHIRMPGQKAYRVVETDRYLPPAVAALNRLEPAPDLVIVSGDLTDFGRPQEYAHLKQMLDALRVPYHVLPGN
HDDRVQLAATFADHPYLREAGEFVQYTIEDQPLRFIVLDTVVPQQSHGALCERRLQWLAQRLAEQPGRPTVIVMHHPPFR
TGIAHMDAIGLLAGAPELEALVARHSNVERIMCGHLHRTIFQRFGGTIASTCPSPAHQVALDLRPDGPSAFVMEPPGFHL
HEWRDGALVTHHAYIESYPGPYPFHEGGELIDE
>SEQF1086_CAE40505.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE40506.1 ABC transporter, permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MREAGMSAMYSKTDARLGLTVTLAVAAFLIGPVVLSVLAGLTRNYFVGLESGLTLRWVIEVWDLYADTIWRSFAVALLTL
LVCTLTGVPAAWVLTLHHGRMARALEELLTLPVAVPGLASALALIVSWGTVSGLRGSIWFIVIGHVLFTLPFMVRATRAS
MAGADLATLDEAAATLGASRLRRFLTVVVPNAAPGIVTGALTVLTLSIGEFNLTWLLHTPLTKTLPVGLADSYASMRLEI
ASAYTLVFLLMLMPLLVGLQWLAARGERNAANAPITNEKTAT
>SEQF1086_CAE40508.1 probable periplasmic solute-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRIIQAALRGTLLALAIGAGAAQAQNAICYNCPPEWADWATQLKAIKEATGITVPGDNKNSGQALASIAAEKANPVADV
VYYGVTFGIQADKDGLVQSYKPAHWDAIPDGMKDPDGKWFAIHSGTLGFMVNVDALRGKPVPKSWADLQKPEYRGMVGYL
DPASAFVGYVGAVALNRALGGTLDNFDPAIDWFKKMRANRPIVPKQTAYARVLSGEIPILIDYDFNAYRAKYKDEANVDF
VIPAEGTIAVPYVMSLVANAPHADNGRKVLDFTLSERGQAIWANAFLRPVRAEAISAEAQKKFLPASEYARAGTVDYVKM
SVAQRGFSERYAKEVN
>SEQF1086_CAE40510.1 amidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNLNRISASEAARLLNRRDLTAEQLARACLARIEQREPEVQAWTALRPDAVLAAARELDRGPIRGVLHGLPLGVKDMFDT
ADLPTAYGSGIYQSHQPRADAAAVALCRDAGALVLGKTATTEFATYHPGPTRNPRNTAYTPGGSSSGSAAAVADDMVPLA
LGTQTAGSVIRPAAYCGVVGYKPSFGRISRAGLKSLAETLDTVGMFARSVDDVALLASALMRDARLRELRYDGTPRVAMF
RSPQWRHTLPETRPAFERAARALSQAGAVVEELAPPPNEDCGLAQLHSDVMAYEAAQALAFERIHYPSQLSTKLAAMLEA
GAALTAEQYLAHLAQAGQARAKVAEWLQRYDVLLAPSATGDPLFCRAWTLFGVPCVHLPFAQGPQGLPVGLQVVGGFRDD
QRLLAIARWMNGVLAAD
>SEQF1086_CAE40511.1 2-isopropylmalate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMLANPATKYVPFQPFARDFAERTWPSRRITQPPIWMSTDLRDGNQSLIEPMSVERKVRFFEQLVKIGFKEIEVGFPSAS
QTDFDFVRKLIDEKRIPDDVTIIVLTQSREDLISRTVEAAAGARQAMIHLYNACAPAFRKIVFNMSRDEIKNIAVTGTRM
VKQYMAKYPQTQWRYEYSPEVFSTTEPEFALDVSNAVADEWDATPQRKMVLNLPATIEATSPNMYADQIEWMHKNLARRD
SIVLSVHPHNDRGTAVAAAEFAVMAGADRIEGCLFGSGERTGNVDLVTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQL
PVHPRHPYAGDLVFTAFSGSHQDAIKKGFAQQQADAPWEVPYLPIDPADLGRSYDAVIRVNSQSGKGGVSYLLEQEHGLV
LPRRLQIEFSRAIQRVTDETGREVSSDDVYTIFDSEYLAQQQPWQLVRHRIDGDPSAGEGKHFSIEAELSFNGERRIVKG
SGDGAISAFVAALDVPVRIMDYHEHAIGTDTRAACYVEVRVGDSPTGFGVGIDRDIVTASFKAVLGAVNRHHVAATQATE
TEAVAA
>SEQF1086_CAE40512.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMNPTSPERIRQDGRLIGQALLKLALPRLIFRVVVVAIAAVIWLLVAAWLLAFGKSLSFEGMHALGQQAVDMLTRVNPYF
WWGVVAIWSLIVFFSIRAWLGSSIAAGRAAVVPTDVLSDLAPRLSPEVLDVLRWVWGEREEPLTVGDLQRAHTELRHNHI
GKIALVREQSGILDAPAHRPGPDERHCAARHAEPRITEPRAVEPRLAEPHIGPAR
>SEQF1086_CAE40513.1 RNA polymerase sigma-54 factor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRPALELRPGQHLTLTPQLQQSIRLLQLSSLELEAELSQALAENPLLERDEDPAREEQADPEREASVEADEAPDTELRL
DEMPGSGGVLPDDDSDLPQAARPDTLREHLLGQLALTRAAPRDAALCGLLIDELDENGYLDSPLEEILTWLPAEVQADLD
ELRAALALLQSFDPAGIGARDMAECLQLQLRQPDPARLPEAADAEVLACARRICAQHLPLLATGNVARVREAVQCDEAVV
RAAHALIPRLEPRPGRAWTVPAADYAIPDVIVRRTRQGWQAVLNSAVVPRLHVNAVYAQVLGGQRQGGNAGLQAQLQQAR
WMIRNVEQRFDTILRVAQAIVAHQQAFFTQGPAAMRPLILKDIAGELDLHESTISRATTQKYMLTPFGTLELKRFFGAGV
STDGGDATSATAVQAVIRQMVADEDRAKPLSDSQIMQRLADQGIVIARRTVAKYREALRIAPATLRKAHAAGR
>SEQF1086_CAE40514.1 putative bacterioferritin-associated ferredoxin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPIIVLMYICICNAVTERQVRACVDAGAATLGDLQFELGVATCCGCCAATATEYLPGGRASSVCEVRSVAVPVNPPAALE
PVGTPQPAANGFPIPLVAVA
>SEQF1086_CAE40515.1 probable LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTNSLFGSKVFEKPMHFPERTAVDLDLLHSFVSVVDAGGFTRAGERVHRTQSTVSQQIRKLEDALGCALFIREGRGVRLT
EDGERLLGYARRMLALSNEIREVVSGERRLEVVRLGLPDDLAVTRLTHMVADFARRHPQVRLSMRCDLSANLHRAQARGE
LDLVLLKREPGAGPSRAAWPERLHWLCAAGGPATLPDPIALVAFPQGCQYRNRAIHALESAGRRWRIAYESPNLSGLQAA
VEGGLGVALLEQRCQTPAMARCDALLPRPAPSELALCMSDTGSRAVHELARLIMDFCGDDKLRQAA
>SEQF1086_CAE40517.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE40519.1 threonine dehydratase biosynthetic [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTDYLKRILTSKVYDVAVESPLERAPLLSQRIANNVLLKREDTQAVFSFKLRGAYNKMANLTPAARSRGVIAASAGNHA
QGVALAATRLGCRAVIVMPTTSPQVKVDAVRRLGGEVVLAGDSFTDAYEHAQQLEKREKLTFVHPFDDPDVIAGQGTIGM
EILRQHPGEIEAIFVAIGGGGLIAGVAAYIKQLRPEIKIIGVQTEDSDAMVRSVRAGRRVQLSDVGLFSDGTAVKLVGAE
TFRLARQYVDDFVVVNTDAICAAIKDVFQDTRSVLEPAGAMAVAGAKQYAAEHKLKGKTLVAVACGANMNFDRLRFVAER
AEVGEMREAVFAVTMPEQRGSFRRFCELVGNRSVTEFNYRISDAERAHVFVGVQVSTPAEPEKIAANFRRHGFDTLDLTH
DELAKTHLRHMVGGHSALARNELLYRFEFPERPGALMRFLNAMNPDWNISLFHYRNQGADYGNILIGIQVPPTDKKLFKT
FVAELGYPHWNETDNPAYRLFL
>SEQF1086_CAE40521.1 probable iron-sulfur binding oxidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MREIPYNYTSFSDREIVSRLLGEDAWQLVSDLRGERRTGRSARMLYEVLGDIWVVRRNPYLQDDLLDNPKRRKLLIEALH
HRLGEIDKRREPAAVTEAGHDPRRDAKVVELLARARSAVAAFEGQFDQTAQLRRQAQRVLGRITARDNIKFDGLSRVSHV
TDATDWRVEYPFVVLTPDAEDEIAALVRACIELGLTIVPRGGGTGYTGGAIPLTWKSAVINTEKFEALGEVESCVLPGMT
EPAAVIRAGAGVVTKRVAEAAERAGFVFAVDPTSAEASCVGGNIAMNAGGKKAVLWGTALDNLAWWRMVDPDGNWLEVTR
LAHNLGKIHDVDVASFELKWFDGAGKPGEKLLRTERLDIEGRKFRKAGLGKDVTDKFLAGLPGVQKEGCDGLITSARWVL
HRMPRHTRTVCMEFFGQARDAIPSIVEVKGYLDGEGKARGAILAGLEHLDERYLRAVGYATKSKRGMLPKMVLIGDIVGD
DEDAVATAASEVVRLANTRHGEGFVAVSAEARKKFWLDRSRTAAIARHTNAFKINEDVVIPLDRMGEYTDHIERINIELS
TRNKLRLLDELDAYLAEPLPMGKVEDAEDVALTRAEVLAERTRQAIEHLARTRRRWQWLLDNLDLPLAQALPELDGLDMA
AQREALAERVQAQPQARVFDVVQDHTVRISWKTEVLPALQGVFSGNAGKLILEGLVAVHARVLKSRVFVALHMHAGDGNV
HTNIPVNSDDYGMLREANQAVERIMQIARDLDGVISGEHGIGLTKYEFLTEAELAPFQEYKRRVDPNGHFNAGKLMPGAD
LRHAWTPSFNLMGHESLIMQQSDIGAIADSVKDCLRCGKCKPVCSTHVPRANLLYSPRNKILATSLLVEAFLYEEQTRRG
ISLKHWEEFEDVADHCTVCHKCYTPCPVDIDFGDVSMNMRALLRRMGRKSFNPGTAAAMFFLNAKDPAAINATRKAMVGV
GYKVQRAAHDLLASVSRKQAAHPPATVGRAPLREQVVHFVNRKMPGGLPKQTARKLLDIEDANYVPIIRDPKTTTADTEA
VFYFPGCGSERLFSQVGLATQAMLWHAGVQTVLPPGYLCCGYPQRGNGMTDKAEQIITDNRVLFHRVSNTLNYLDIKTVV
VSCGTCYDQLAGYEFEKIFPGCRLIDIHEYLLEKGIKLDGVQGVRYMYHDPCHTPMKLQDPMKTVRSLVGEGAQKSDRCC
GESGTLAVSRPDVSTQVRFRKQEELDQGQAAMRADGFSGDVKVLTSCPSCLQGLSRYEGETGMDADYIVVEMARHILGET
WMEDYVRRANTGGIEHVLV
>SEQF1086_CAE40522.1 GntR family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRYLCFNVYLVLSYICKLRRPAAKEFILDVKAPATIPYFLKEQIRELIVDGTFRPGQPLREQDLEQRFGTSRSPIREALR
LLERGGLVVHLQRKGFRIRRYSQTEIRQVYMLYAELEAYSIMQLSEAADSPLLDDLRRHEARIAQAQADADVRGYIGALR
DFYLASARFTGNVPLADTLSRLYEQVEPLRYNLVRRTLAATPADQYHRGIVPALAQRDLAGAARQAHVLVREMLPRILSA
YEQWAGDAGDEPGDDRLRVA
>SEQF1086_CAE40523.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKQALEHIKVVDLTRVLAGPWATQILADMGARVIKIERPGAGDDLRGWGPPFLKNAHGEETTDAAYFLSTNRGKESVTLD
ISSAEGQEIVRQLAKDADVLVENYKVGTLARFGLDYESLRKINPRLVYCSVTGFGQTGPHAHLPGYDYIFQGMGGLMSIT
GLPDAEPGGGPLKTGIPITDVVTGIYASTAILGALEHRNLSGEGQAIDISLLDCLVNVTGCAVMNYFLSGRIPQRLGNTH
SNMVPYQVFRCKEGDVIVAVGNDTQFVTFAGLIGMPQLATDSRFSTMAQRSRNRETLIPIIAQAMQARTMQEWVSLLEAA
NVPCGPINNLQQVFEDPQVQHRGLKLSLPHGSGVDAPGVASPIRYSATPIAYGRAAPCLGEHTDDVLQSELGMAPAAIGA
LRARGIV
>SEQF1086_CAE40524.1 putative lipase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MASAQLATLSAQVRQLYAGWDPNTDIARIRRDWDAFFGAVRLPARVTPVDAGGVPCHWIEAPASTRDRVVVFIHGGGYQI
GSHRSHHNLMARLSAWSGRAVLSIGYRLAPQARCPAALEDVDAAHAWLAGQGWSARQTALCGDSAGGALAVLLLARLRAR
GAALPAACAVMSPWIDLQARGESYTANAASDPIANRATVLRMARAYLGRDGDPEAPAVSAQHADLRGLPPLLVQAGSAEA
LLDDARALAARAAASGVAVRLSVWQDMPHVFQLFAARLDAADAAIAELADFINHPLRAPTGAEPRHETST
>SEQF1086_CAE40525.1 putative enoyl-CoA hydratase/isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNKSDSFELIEYQAADGIARIAHNRPQARNAESQGLLEELDQALGLAVRDASVKAIVISGKGDHFSAGHDLKEAAAKRSN
FTVEQRWEFEQRYYLGYAMHIYDCPKPTIAQVSGACIAGGFMVANMCDLIVASDDAFFSDPVCQTLATAAVEVMIHPWVM
GARKAKEFLFLGERMSAREALAIGMVNKVVARAELQAETERMAQRIAACDPFALRLVKRSINRGLEMQGLRSAIDAHFDT
HQLSHLSEGFNRARAQGLGNAIQAAAAGSR
>SEQF1086_CAE40527.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPFSLLRRIATIALLMAASSAHADTFPSRPIRLIVPFGPGGITDLIARQAALGMAEKLGQPVIIENKPSAGHIVAMQTV
AQATPDGYTILLGSNTGFTVAPHMYKNLPFRIDTLQPIAPINTAPTVLLARPDFPANNLTELIQYIKDNPGKLNYGSFGI
GTSAHLGMEIMKSDLGLNIMHIPYRGDAQGLLALKAKEVDIAYITLFSAQARIRAGEFKALGVLQNDRLTAFPDIQTTVE
VGSKNSGMPVWIAFFAPPGTPDAVMRKLESATRSASTAPAFVEFLHNNGVEPWNPSNQDLMRFIQDQLNRSGPIIQEIGL
QPQ
>SEQF1086_CAE40528.1 probable transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAPKASRPARDRQFASTLAHGLQLLRCFTPEAAVLSNRQLSELSGLSKPTVSRYTYTLIELGYLKVDPVSGKFQLGNAV
LTLSYPLLANIALRQVVRSPMRELAERLGCSVSLCMRERLSMVYVETSRSRSLRAQRYSDIGMSHPIIATSNGRAYLAAC
SADERNTLFNQIRVKTPEHWERWGESALDMIQFWGRHGFCYSHGEYRPDVATVGVPYRPSSGGELYVFNCVLGSQFVKPG
QLENEVGPALLEMTSVLPYA
>SEQF1086_CAE40530.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLAVIKPGMLSTFQDGGRHGYQHQGIPVAGAMDPRAHRLANLLAGNAADTATLEITVAGPTLRFEAPACVALGGADLGA
TLGGLPAPVLRPLVARAGDVLSFARPGQGARAYLAVHGGYDLPMVMGNQSTYLRSAFGGYHGRALAKGDQVGLRRPLADD
AARLDALAQQLWQLRFYLAATLSSPPRDVLRILPGPHWAAFDAASRQALLDQAFRIGAQSDRMGYRLEGPRLRLSEPREM
LSEATCFGTVQVPADGAPIVLMADRQTTGGYPKLAQAMPGQALRFALIELAQAQRLDAAREAAFAQLTGQLDALRGLLRD
FQEPTP
>SEQF1086_CAE40531.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTASPSPPSSAPAGWRILPQGDRCLIVWFGAQIDAGVGRACLAAAGLLRAAGLAGVTDVVPSFAAVAVHYRPGPDGAPDY
ATLAAQVERLLAGGIPVDDSAGREMEIPVCYGGEHGPDLEEAARAAGLTPEALVALHGAPGSMVYMLGFAPGHSYIGVHD
ARLDLPRRATPRTAVPAGSVAIANRQTVIYPARLPGGWNIIGATPLNLFDPGREPAALLQPGDRIRFVPIDAAEFDRLRE
AQ
>SEQF1086_CAE40532.1 probable dioxygenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTPSPIPPFHLAFPVRDLAEARDFYGALLGCPEGRSSPEWIDFNFYGHQIVAHLAPQACGSAATNAVDAHNVPVRHFGA
VLSMDQWEALAGKLTDAGTEFVIEPYIRFKGEVGEQATMFFLDPSGNALEFKAFKNIESLFAK
>SEQF1086_CAE40533.1 LysR family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIREFKTFIAVARGGTFTGAGRRLGLTQSAVSAQIKRLEEHLGVALFERTGKSAALNHHGRSLLPQAEVLVAMADRVVGM
AGAGRISGLLRVGAIASVQQDLLVRALAALRAEHPDVRVRIVPGVSLTLLGHVDAGEVDLAVLIRPPFALPPELEWQPLL
HEPMVLAVPEAAPEGPWRELLAGQPFIRYDRASFGGRLVDMFLKRHRLDVREAIELDEIDAIANLVRHGLGVALLPHTRH
LDARGLRLLELDDQVRFAREIGLIVRQPLGQSPLAQRLAQCLRAAVSFGEA
>SEQF1086_CAE40534.1 D-3-phosphoglycerate dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLYRQPNMAQIVLFENIHPSARAVFSAAGYTDIVAHAAALPSGELREALRGAEVVGIRSRTHLDADLLAANPDLRVVGCF
CIGTNQVDLDAAMMRGVPVFNAPFSNTRSVAELVLGEAILLLRRIPEKNARVHLGHWDKSAAGAYEARGKTLGIVGYGNI
GSQISTLAEAIGMRVVFFDVEAKLPLGNARAAGSLAELLEQADVVTLHVPGGKSTQNIVNADTLARMKRGAILINASRGT
VVDIQALHDALASGHLAGAALDVFPTEPKSADEPLASPLIGMPNVVLTPHIGGSTQESQENIGREVAEKLVRFLQAGTTK
SAVNFPELSYQAPVGGSRIIHVHRNAPGALGALDNLMAQHGLNIVSQSLQTKGQIGYAVTDVDGEVSDTVLADLRSHPVT
VRCEKL
>SEQF1086_CAE40535.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSHVSTLRRALLGALLLAPAAALANTPIPIDVWRTPTCGCCEDWLQHLRSNGFEVRAHMVEDTAPVRSQAGMPARYGSCH
TARVQGYTVEGHVPAADIRRLLRDKPRAVGLTAPGMPIGSPGMDGPAYGGRRDAYDVLLVQPDGSVRVFQAYR
>SEQF1086_CAE40536.1 two-component sensor kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRLRTPSMQRRLTLWLGVIALLASSLAGALLFWTLKQEVQRQEITEARGKAELIEHLVGMQSHTSRALSDMLDGIQAGHG
HLGIWITSPDGTLRYGNATPEVLSVTDDDEVLLRNADDTRMRGVRLTLPGPPEAGATLTVAVNTLANARFLYAYGTALLL
ICALWIGATVVLAAWAVRRTLAPVRRLSGQAASIQPEHLDVRLPVVGIDRELSDLVASFNRTLDRLQEAYQKMEGFNADV
AHELRTPLATLINGAQVTLSSPRSAEELREALTSNLEELEDLKTLVNDMLFLARADRGEQAADLAPARLEQEALRVAEYF
EATLEAQALHVAVQGSATCAANPGLVRRALANLLANAIRATPRGATITVRCAALPDGAARLTVHNPGPPIPAADLPRIFD
RFFRSGGARPPRGEGHGLGLAIVRAIARMHNGGVTAASGPAGTEIGFSLGARPAQDDKRVIRATD
>SEQF1086_CAE40537.1 two-component response regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MCILVIEDEPKLADYLHKGLSEQSHIVDVARDGVNGRHLALEGDYELVILDVMLPDIDGFAVLAALRAAARNTPVLMLTA
RDRVEDRVRGLEGGADDYLVKPFAFSELLARVHALQRRGRSQESTLLRLADLELDLASRKAQRGGRRLDLTAKEFSLLAL
LLRRQGQILSRTTLAEQVWDMNFDSDTNVIDVAIRRLRGKLDDPYDAKLLHTVRGMGYVLESRPS
>SEQF1086_CAE40538.1 phosphate regulon sensor protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIWLRTLFMIAFWAVMALLAQWLIGDPAGWLLFGAATAAMLLWRSWRLHLVSRWAHDPESAPPAAVGPWDDILAPLYRYT
RARARELAETRETMQSMLAAAQALPDGVVTLNEDFQIDWANRMARRHLGLRLPADRGHNLLNLLRAPEFVAYAHRGHWPE
PILVRLSLNGQERVMMIHLAGYASNQRLLISRDVTQIERLETTRRDFVANVSHELRTPLTVLAGFLETLRELPAEALPAE
QRDQYMAMMHEQARRMQAIVEDLLTLSTLESSPEADPLAVDVGALLRTARQQVEALSNGRHVFEWQIEEGLDVLGSGTEL
ASALSNLLTNAVRYTPDGGRIIVRWRRGADGEALYSVQDTGIGIPARHLPRLTERFYRVDRGRSRAAGGTGLGLAITKHI
AMRHDADLLIDSELGKGSTFTLRFPAERVTGEDPDR
>SEQF1086_CAE40539.1 phosphate regulon transcriptional regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLPGASGLSLARKLRDEERTRAVPVI
MLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRAPQLTDDIIDVAGLKLDPVTHRLSGHSQSLSIGPTEF
RLLHFFMTHPERVFSRSQLLDQVWGDHVFVEERTVDVHIRRLRKALEPSGHDAHVETVRGSGYRFTAQVPAR
>SEQF1086_CAE40540.1 ubiquinone/menaquinone biosynthesis methyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQTPHSQPESAPQGEQSTHFGFQSVPEADKARKVAEVFHSVASRYDVMNDLMSAGLHRVWKAFTIGRAAVRPGMKVLDIA
GGTGDLARAFAKRAGPSGEVWLTDINESMLRVGRDRLTDSGLLVPTAVCDAERLPFPSQYFDRVSVAFGLRNMTHKDRAL
AEMTRVLKPGGKLLVLEFSRVAKPLAPAYDWYSFNVLPWMGKKVANDEASYRYLAESIRMHPDQETLAGMLRDAGLDRVQ
YFNLTAGVAALHEGVRLG
>SEQF1086_CAE40541.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRSRFSRFCAMALVAVAGTAMVGASFDAEARRMGGGSSFGRQSTNITQQRQAVTPPAAGAGSTAGATSAARPATAAAGT
AAAGTAAKSGMSRWLGPIAGIAAGLGLAALLSHLGLSGAFAEFMASMLLIALVVFAVIFIVRRLRGGAPRQAMQGAYGAA
GGNRPGQPSQQPMWRESLNPAPAQQPAAAPVAAAAPAAAAAALPKAGDDGNWFIPGDFDTPRFLQQAKDQFVRIQGIWDS
GEVESLRDFLTDDLISELKPQLEARGAAANKTEVVLLNAELLGIETVSDGHLASVRFSGMLREAPGTEAFRFEEVWNLFK
PADGGWLLAGIQQIPVEHAS
>SEQF1086_CAE40542.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLLLRTPRGWSAPVDSMLPFAALPTLPRIAARALNALLERESWARDRLARHAGKTVRFALGGFALSLTIDSEGRVQEAD
SAVVPNVTLSAAESSSLARLLPGDGRADFADLTHISGDAALAQVVADLARDLRWDAEDELARVVGDIPAARLLGGARALA
GGAREAGGRLARNVSEYLAEESAVLVGRPQWEQWRLDLARFGADSDALARSAAALEARLARLDARRGA
>SEQF1086_CAE40543.1 probable ubiquinone biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAMLTFLRLLRILLVSLRYGLDELVLSSLNHPLATCLLRIMRLGTRPRAPRGARLRMALESLGPIFVKFGQVLSTRRDL
IPADIANELALLQDRVPPFPSAQAAACIEAALGAPPAQLFAQFDVDPVASASIAQVHFAVLHDGREVAVKVLRPGMLNVI
EKDLALLRVVAGVIERLGADGRRLKPREVVAEFDKYLHDELDLVREASNCSQLRRNFGPESGRGEMLIVPEVVWEYTAST
VFTMQRMYGIPVGQVDRLRAAGIDIPTLARSGVEIFFTQVFTDGFFHADMHPGNIYVSDAPQTLGRYIALDFGIVGSLSE
FDKNYLAQNFLAFFHRDYRRVAQLHIESGWVPPETREEELEGAVRAVCEPYFDRPLAEISLGQVLLRLFQTSRRFNVEIQ
PQLVLLQKTLLNVEGLGRQLDPNLDLWKTAKPYLEHWMRQRIGLTGLRQSLAKEAGQWSQMLPSLPRLVHEHFSRPNLTP
HLLAEMNRLRRAQEQGNRLTAALTAVLAVAVAVALWALSR
>SEQF1086_CAE40545.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI
>SEQF1086_CAE40547.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPHVRPSNAWRFLRTLWLGAWLAGWALLAQAQQLAPVPEFGARVVDQSGVLDAAQRQRLEAQLAALEQRKGAQVAVLIVP
STAPETIEQYATRAFEKWKIGRDKVDDGVLLLMASDDRALRIEVGYGLEGAIPDSAAGRIINEYIVPRLRAGDWPGAVQA
GVTALERRIEGEELPPPAASGRDEGSRLAGIRGWLGENGIAALVVLLILPGPIAAALAGVGVAIYMQSISAGLAMALLVL
GIKVIIKALPSGGGGGGGGGGGSGGGGFGGWRGGSGSGGFGGFRGGGGGRSGGGGASGRW
>SEQF1086_CAE40548.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTITRWLGAGLLALLTTLLSGCGYNAIQAADEQVKASWSQVLNQYQRRADLVPRLVKVVDAYMTHERQVLVEVTEARAKV
GRVQLTADQLDDPAAVQRFQQAQGELSSALSRLLVVTENYPQLKAEGLFRDLQTELAGTENRLAVERERYVRSVQAYNVL
VRQFPEVITAKVFGYAPKANFGVDNEAEITRAPEVKFSNEGGSAPRPAQ
>SEQF1086_CAE40549.1 putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTSISFADLGLADSLLRAIADTGYTAPTPIQAQAIPLVLQGGDLLAAAQTGTGKTAGFTLPILHRLMQTKPAARKPGRP
RCLILTPTRELTAQVAESVQTYGKYASLSSMVMFGGVNINPQISALKKPLDILVATPGRLLDHAGQKTVDLSGVEILVLD
EADRMLDMGFIRDIRKVLALLPKQRQNLLFSATFSDEIRSLARGVLNDPGEVSVTPRNTATELVTQTVHLVEQHHKRDLV
SHLIRESGWHQVLVFTRTKHGANRLAEKLVKDGLSAVAIHGNKSQSARTRALSGFKDGSVAVLVATDIAARGLDIDQLPQ
VVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDDSEIKLLKAIERLIKKPIERRAVDGWTPPAGGPTAEDRADRGQRAG
GDNRAPQARDGQRRATGAHPQGSAPRNAAGPRADAKRNDAGRPQGRAPGETGATRAPAPARNRPVGNGTRGVLLGK
>SEQF1086_CAE40550.1 LysE family efflux protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLSTWLTFFVASWAISFSPGAGAISAMSSGLKYGFARGYWNTAGLILGILFQFLIVAVGLGAVLATSELAFTLVKYAGV
VYLIYLGMRQIRTDAAPVTVDAGDPHRASIRELVGRGFLINTMNPKGTVFLLAVVPQFVDPAQPLTQQYLALAGTLAFTD
LVAMDVYTLLAAKVLRMLRKAHHIRWMNRVFGSLFILAGVFLATFRRHS
>SEQF1086_CAE40551.1 peptide chain release factor 3 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRQYNPPAMNIPQEVARRRTFAIISHPDAGKTTLTEKLLLFAGAIQIAGSVKARKASRHASSDWMEIEKQRGISVASSVM
QMEYRDCVINLLDTPGHQDFSEDTYRVLTAVDAALMVIDAANGVEPQTIRLLQVCRARNTPIITFINKLDREVREPLELL
SEIEGHLGMDTVPFSWPVGMGKAFGGVFDIRRNRMRIFRAGQERRGEDDEFIDGLDNPEIPRRFGAAFAQASGEIELINE
AAPAFDREAFLAGKQTPVFFGSAINNFGVQEVLDALVDQAPAPGPRQALEREVRPDEPKFTGVVFKVQANMDPAHRDRVA
FVRVSSGRFERGMRLKVARTGKEMRPNNVVSFLSQRRELLDEAYAGDVIGIPNHGVLQLGDVLTEGESLRFTGLPFFAPE
LFQAVEVKDPLRTKQLRVGLTQLGEEGAIQVFRPEAAGGALLLGAVGQLQFEVVAHRLKTEYGVDARMMPSRYTSARWIT
SDDPRALRKFMDANAAHIAYDVVDAAAFLITSPAQLRVAEDLYPNVKFHALREHGGKVFGDKA
>SEQF1086_CAE40552.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRVAMSWRLLIATLLVALGAAAWGGIQLGDWLVAHAPQAAPAPGQEGDASQQPVLDANGRSYVAQPPQPRVDGTLGVPDQ
PASRDWAVNTVSLFDTTGDPAVQISRDSITMDRAREIAANSDVPLPSGNSDITTLDLQALGGQAPIVPQEAIPASGMQQN
PAAVAQVAPQTNRAGGGNWQDALRRELAHCATQGFFERPSCSWAARNKYCAPNRAWGTMAECPRRPD
>SEQF1086_CAE40553.1 bacterioferritin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKGDKTVIQFLNKQLTNELTAINQYFLHARMLRHWGFNKLGKHEYEESIGEMKHADRLIERIFMLDGLPNLQDLHKLLIG
EDVPELLACDLKLEQAAQATVKEAIAHCESVRDYVSRDLFQDILDDTEEHIDYLETQIGLVDQVGLQNYLQSQMEVDG
>SEQF1086_CAE40554.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE40556.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPIRPFTRACLVAALGAVLAGCASNTGQAQAEGAAAANAATSADSFAQTTWELVRWTKADGGYRVISHGDNGEPIFLTFF
AQGKQYRVSGFAGCNRYTGAYRLRDGKLQITAPASTRMACPQPERARLEADYLRALAQIRSFTLDSGGAPRHLTFNVQGG
DVLDFMRRQDPPTPE
>SEQF1086_CAE40557.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAISPGRVALSFSLLLALAACAADPAGGGASRAQAPERHSDMLAQTNWELARWTRPGGALRPVPHGGAGKTAPITLSFT
HQRGAARLAGFAGCNNYSGQYTIANGLLIVTAPPVSTRMACANADLARLEQDYLAGLTAVTASRLDHDTRPQRLTLALRS
GDVLDFARRADPLAGGQPGAAKLVYVASSKAPCSAGAGRAQCYQVRDSASQPWLLWYGDITGFAFQPGIEYRLRVVEVRD
PNPPADASGVRWVLDSVVEQRVAAPRPAPAP
>SEQF1086_CAE40558.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAVVNIAAYKFVSIANPADLREPMLEQAGQRQLKGTVLLAPEGINLFLAGAADAIEGFLRWLRADARFADLQAKYSESA
RMPFRKLLVKVKREIIRMDHPAIRPEAGRAPAVDAATLRRWLAQGRDDQGRELVMLDTRNAFEVEVGTFRGALDWRIERF
TQFPQAVRDNQAALAGKTVVSFCTGGIRCEKAAIYMAEAGIEHVYQLEGGILKYFEETDGAGFDGACFVFDERVALDAAL
APQA
>SEQF1086_CAE40559.1 methionyl-tRNA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRTLFVTTALPYANGSFHIGHIMEYIQADIWVRSMRMAGHTVHFVGADDAHGAPIMLKAEKEGITPQALVARYAAERPR
YLDGFHIRFDHWHSTDTPENVALSQEIYRALKSEGLIETRSIEQFYDPVKGMFLADRYIKGECPRCHAKDQYGDSCEVCG
AVYAPTELINPYSALTGAAPVLKSSDHFFFKLSDPRCVEFLQQWTTGANRQGVKHLQAEVQAKTREWLVGDDGEAKLGDW
DISRDAPYFGIEIPDAPGKYFYVWLDAPVGYLASLKSYCAAKGLDFDALLDPAGPTEQVHFIGKDIIYFHALFWPAMLKF
AGRKTPDQLNVHGFITVSGEKMSKSRGTGISPLRYLEIGMDAEWLRYYMAAKLNARVEDMDFNPEDFVARVNSDLVGKYV
NIASRAAAFITRHFDGELAYDGDTDALAAEFAQQAESIRAAFEAREYNRAVREIMAHADRINQAFDAAQPWVMAKGIGAA
DAATRARLQDICSRALAGFKALSVMLAPVLPALASRVARELFGANADFAWGDAQQLPQRVAPFKHLMQRVDPKLLDDLFE
PPAAEASAPAALPGGEALADTITIDDFAKIDLRIARIVNCEEVEGSTKLLRLTLDVGEGRHRNVFSGIKSAYQPQDLVGK
LTVLVANLAPRKMKFGVSEGMVLAASHADEKAEPGIYVLEPWPGAQPGMRVR
>SEQF1086_CAE40560.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVNTLFRFFSAALFALLGLIGMMMALVFMASTAIAVGVLYLVAKVRGKPFGVRAYWSQRQAARPGPFQAASAPFGQPRGD
VIDVEAREVR
>SEQF1086_CAE40561.1 putative iron sulfur binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMSITIEQIRGALAGVADPQTGLELNVCVKDRDIHLAADPAALTIELGYPAGGVADSVRALAGAALAAAGLGAVRVAVTW
NIIAHAVQPGLKPLPQVRNIIAVASGKGGVGKSTTAVNLALALAAEGARAGLLDADIYGPSVPAMLGLAGRPESRDNKTM
EPLVGHGLQANSIGLLIDADAPAIWRGPMVTQALEQLLRQTNWRDLDYLVVDMPPGTGDIALTLAQKVPVAGAVIVTTPQ
DIALLDARKGLRMFQKVHVPILGVVENMAVHICPQCGHAEHIFGAGGGRRVAEQYEVPWLGSLPLQRAIREQTDAGNPTV
AAEPESEVAGIYRDIARRVAARIAGLPRDMAGKLPAVVVRPA
>SEQF1086_CAE40562.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRILRVCPALLFALAAGQVHAKLPEVIVDPGGVPPAALQAINSAVDAIARLSEDQDGGEIDRLRRRARDATLAALATQG
YFTPTVTLTPGTDVGGETWDIAIEPGPRARVASVDLKFTGRVARPEYAARIQKWRDDWALKAGQPFINGDWNKAKSGLLD
AVSTRDFLLAHMTHSLAEVDAETAQVRLSVEIDSGPAVRMGALQTDGLQRVPESLVRRYVKYSEGAAYDQDKLDQWQQEL
QSTAFFRGAFVTLDQGARGGQDDVKVTAPGASARAPGSSGLASVAPAGDAEVAGGPTAAAPVLDSQGEITLPVDVRVVEA
PPKRLAVSLGVDDEAGVRFETIYRQNVVFGQPVTMETGLGVDRLRQRAYLDFNLPPDERGRKDSFGLLFDHSDVQELDVT
RYALGVTRLQERKGAGDSRVEYETRWGGLLAHDHVKIDGGDEYDLPTATLTAEWLRRDVNSKYDPREGNLIAVGGGVGAT
LDDGQPYMRLRLRGQKWWPIGKLDVLTLRGEVGRLWSNGRTRVPDDFGFRTGGARSIRGYRYQSIGVEQDDAIVGAPTLA
VASVEYDHYFNERWGIGVFVDAGDAAESFGDMDIAVGYGVGARVRTPAGPLFLDVAYGQRERDLRLHFSLGIAF
>SEQF1086_CAE40563.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKIWGVVRHILVWWVPGVAMLAALACGFVFWTVASQNGTRLLLDTVARQLDGEIAGVRGSVLRGLRVDRIRLSVADVDV
AVDDLRLDVAWRALGQRLLHVRELAATRVEVGLHTPATPPPDSDEPFALRLPVELALDRLSLGEFVLRQDGEPLPVSAGE
LQASLAAGRHGARLTLDSLRVTHAVGTLRAQGRLDVASLAQPWPLTASLDLQAQGSGPESPLCLAPLLDARDKTAKDKAA
KDKGKDKGKDKGKDKGKDKGKDKGKDKGKDKGKDKGKDDAGEKPDEPADPCGLALQVQAQGTLEQLEAELTGAGQGLALE
ARAGLLPQAPFPLRTASLKLTREDKSSLAATLDWQPQPGQPGRDRVVATFEAERLDLQRLAGEAIPPAMLSARGGLDAEV
DDLSSLHRATLTLDVTKGSSWNRHPLAGKVAASVSALGDPPGAFATAAPAQPHALPGGLWVDQLDVDLQLGPNRVRAQGK
LDERAGALKLDAQAPRLDAFWPGIPGAASVKAALDGALARHRGRIEAAYTPADARARVLGRARAQAQLEFSGGWGAGPAA
EGAAAGWRGSVSRLTADSAGFALALERPVTLAYVPEALAPQWQWQVGATTLALTFPDKQRVALAHAASRGGAGRWETAGR
ADALVITAAMVRQILVALDPEAVARAERDSGSPVNAPVPAAQRRISLDASWDLKFAGALAGKVRVARRDGDLRIPGDPPI
PLGLRTLVLEANATPTGGQASRLDARLDMATARMGAINGTASATLGGLALDPRQPIRVALDADVTDLAWLGLFVGDTLEV
GGMLKANVRAQGSLDGKWNASGTVNGDKLRVVRIDDGVRLIDGMLRARLQDDRVILDSLRFPASLRVMPAEWRTREWVST
NPDAKGGYLEATGQWELSAARGQVRLQLHRFPALQRSDRYGMVSGVVTLDAALPRISINGDITADAGWVSLEILQGVPTL
DDDVKVVRAGQKNAQGDGPPLQIDMNLKVDMGPRFYITGMGLDAGLLGSIQIRLQEGRLTGYGALRTRGGGIEAYGQKLR
LRRGTLTFQGRLDNPLLDIEALRTGEQVEAGVRVAGTAQRPRIDLVSYPDVSDVEKLSWLVLGRGPDASGGDTALLLSVG
TALLGGGQPFYKQFGLDDVSVRSGAIGSSGSLLPDRTVAAGVNRDSDADLATQFLVASKRFANGITLSVEQALAGSETVG
RASYRLARGLSLDLKAGSVNGIALVYRILLDD
>SEQF1086_CAE40564.1 deoxycytidine triphosphate deaminase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSIKSDRWIRRAAEAGMIEPFEPGQVRTAGGNRIVSYGTSSYGYDVRCADEFKIFTNINSTIVDPKQFDEKSFVDFKGDV
CIIPPNSFALARTVEYFRIPRSVLTICLGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTPLPAKVYAGEGCAQMLFLE
SDEVCETSYRDRGGKYQGQRGVTLPRT
>SEQF1086_CAE40565.1 conseved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPAPATVASPVVTCLRYRNASAAIEWLVHAFGFEAQRIVPGPADTIVHAQLTLGSGMIMLASVTDTPFSRYMKQPDEVGG
VETQSVYLVVADPDQAYRDAQAAGAEILIDIADADYGGRGFSCRDPEGHIWSVGSYDPWQ
>SEQF1086_CAE40566.1 putative lyase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQAQVLINIDVPDAARAALFYERAFGLRPQRRLGPQAIEMAGAAVPIYLLEKATGSQAATGTSQGRDYARHWTPVHLDFV
VDDCDRAVATAVAAGAMLEDPPHSHAWGRIAHLSDPYGNGVCILQFLGEGYDALAAAAP
>SEQF1086_CAE40568.1 hypothetical protein BP0189 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKIREKRGCFAAQEPQMFGFRRKDTQQYDQEAQDAFVERVAAAARDFVAAVPAGAGLDYSPASIAALDAVLEQAHLGALA
LDPVQRVGAAAYLYEVARRRHGGLYEVCDDDDPVVLVTGEPEFDVCLCAIAKVERRIDAGPQEDLRPFFGRYEQAVAARR
PDIIR
>SEQF1086_CAE40569.1 probable orn/arg/lys decarboxylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKFRFPIFIIDEDYRSENASGLGIRALASAIEAEGVEVIGVTSYGDLSSFAQQQSRASAFILSIDDEEFDVDSPEDVAGA
IKNLRTFIGELRFRNADIPIYLYGETRTSEHIPNDILRELHGFIHMFEDTPEFVARHIIREARSYVDGLPPPFFRELVKY
AQDGSYSWHCPGHSGGVAFLKSPVGQMFHQFFGENMLRADVCNAVDELGQLLDHTGPVAESELNAARIFHADHCFFVTNG
TSTSNKVVWHANVAAGDVVVVDRNCHKSILHAITMTGAIPVFLRPTRNHLGIIGPIPLDEFDPENIRRKIEANPFAREAL
NKKPRILTLTQSTYDGVIYNVEMIKEKLGTYVDTLHFDEAWLPHAAFHEYYRDMHAIGPDRPRSQDAMVFATHSTHKLLA
GISQASQIIVQESESRKLDRNLFNEAYLMHTSTSPQYAIIASCDVAAAMMEPPGGTALVEESIREAMDFRRAMRKVASEF
GKDDWWFKVWGPNRLAPEGIGHRDDWVLESGDHWHGFGDLAPGFNMLDPIKATIITPGLDMSGSFGESGIPAALVSKYLA
EHGVVVEKTGLYSFFILFTIGITKGRWNTLLTALQQFKDDYDRNQPLWRILPEFCRGHRRYERMGLRDLCQQIHEAYRER
DVARLTTEMYLSDMVPALKPSDAFARMAHREVERVEIDQLEGRVTGVLLTPYPPGIPLLIPGERFNRTIVQYLQFAREFN
ERFPGFETYIHGLADEEGPDGAKRYYVDCLKDAGEQ
>SEQF1086_CAE40570.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSREYPVSMFDVAVIGAGAAGMMCAAVAGQRGLRMVLIDHAAKLAEKIRISGGGRCNFTNLGAGPANFLSDNPHFCRSA
LAGYTPQDFLGLLRRHRVHWHEKHRGQLFCDDSSETIIEVLRAECGQGGVAWRMPCRVDEIARREGGGFTLRTSTGAIDA
RAVVVATGGMAIPQLGATDYALKVARQFGLKVVEPRPALVPLTFDPAQWQPFAALSGVALEVTLSTGQGKGRAAFLEDLL
FTHRGLSGPAILQISSYWKPGEPIVLDLAPGRDLAAELIGAKPGNRQQLHTVLAGLWPRRLADTWLDVAGRAVGADLAAA
RLADVPDRTLRALAALIHDWRLVPSGTAGYKKAEVMRGGVDTRALDQKSMQARGVPGLYFIGEAVDVTGWLGGYNFQWAW
ASGYACGNAL
>SEQF1086_CAE40571.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE40572.1 superoxide dismutase [Mn] [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPYVLPALSYAYDALEPHIDARTMEIHHTRHHQTYVNGLNAALEGAGLDSEEPVEQLLRRIPALPPGIHGAVRNHGGGHA
NHSLLWTVMSPSGGGRPDGRLAADIQAQLGGHDAFQAAFTQAALGRFGSGWAWLTVTPAGRLRVDSSANQDSPLMEGNTP
ILGLDVWEHAYYLQYQNRRPEYIEAFYRVVDWAEVARRYEIALAELGREAA
>SEQF1086_CAE40573.1 probable metal transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHSRHRVRPALTSVSAMTLAVLVACLACYQLWEFLDRRWPHVALAMAGGMVAAGATALGAVPVLFSQTLSQRVQDCMF
GFGAGVMLAASAFSLVVPGIAAAGAQGYGPWGAGILVGAAILLGGAVLLASDRLLPHEHFIKGKEGRASRTLRRTWLFVF
AIMLHNVPEGLAIGVGYAGSDSLRGAALATGIAIQDVPEGLVVALALLAAGYSRAFSVALGMLSGLVEPLGAIVGAAVVG
WSAAMLPWGLGFAAGAMLFVISHEIIPESHRKGHEVPATAGLMLGFVLMMLLDTALG
>SEQF1086_CAE40574.1 glycine cleavage system T protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAPLKRTPLAEEHLAAGACMVDFGGWDMPLAYGSQLEEHHAVRQDAGMFDVSHMLNVDVGGADATAFLRRLVANDVARL
ATPGKALYSCMLNPQGGIIDDLIIYYFAPDQWRVVVNAGTADKDIAWMQRVAAADGFDVVIAPRRDLAMVAVQGPNARAK
VWAARPAWQAASEPLAPFSAAAVEAGTLVARTGYTGEDGFEIVLPADAVVQLWRDLLAQGVRPCGLGARDTLRLEAGMNL
YGQDMDELVHPDQAGLSWTVALKDEARRFVGRDAIEQFAVPRAFVGLKLQERGVMRAHMPVRCAQGMGELTSGTMSPTLG
VSVGFARMPVGVQPGDAVEVEIRGKWVPALVCKLPFVRHGKAVEHS
>SEQF1086_CAE40575.1 glycine cleavage system H protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLPTDRKYTESHEWVQAEGDVFVVGITDNAQEQLGDLVFVGDVKVGATLKAGETAGVVESVKAASDIYAPVDGEIVAFN
DELEANPSLINESAYTAWIFKIKPANAADLDKLLDAAGYQAVAG
>SEQF1086_CAE40576.1 glycine cleavage system P protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRAPDTHSDFIPRHIGPSDEDQATMLVAIGAASLDALIDEVVPPRIRSRAPLALPAARSETDVLQDLKRIAARNQIYRN
YIGQGYYGTHTPNVVLRNVLENPAWYTAYTPYQPEISQGRLEALLNYQTMVADLTGLDISNASLLDEGTAAAEAMTLARR
GSRSSSPVFFVSQHCHPQTLEVVRTRAEGLGIELVIGDESRGLPECFGVLLQYPHSLGGVADYRELAQAAHAQGAVVACV
TDLLALALIEPPGQWGADIAVGSAQRFGVPFGFGGPHAGFMACRDAYKRNMPGRLVGVSKDAQGNPALRLALQTREQHIR
REKATSNICTAQVLLAVMAGLYAVWHGPRGVRRIAERVQSLTGALRAALAGLGVKVANDTWFDTLSLETGAATPAILAAA
DCARINLRQVDGARLAVSLDETVTLADLQALVNVFAAGLGKDEVALAPPQASLDGIPAAVRRQGPILSHPVFSSVQSETD
MLRYLRKLADKDLALDRTMIPLGSCTMKLNATAEMIPITWPEFALIHPFAPASQTPGYRELIEGLSAQLCEITGYDGISL
QPNSGAQGEYAGLLAIRAYHQANGQPQRNVCLIPASAHGTNPASAQLAGMDVVVVASDANGNVDLADLRARIAQVGERLA
ALMITYPSTHGVFEEAVTEICDAVHEAGGQVYLDGANMNAMVGVAQPGKFGSDVSHLNLHKTFCIPHGGGGPGVGPVAVR
AHLAPYLPGVLDARGRLDPEAKVGPVSAAPYGSAGILPIPYVYIALMGAEGLRRATEVAILNANYIATRLRGHYPVLYAG
RNGRVAHECILDVRPLKETSGISAEDIAKRLMDYGFHAPTMSFPVAGTLMVEPTESEGLAELERFIEAMIAIRAEIAQVE
SGERDRDDNVLRNAPHTAQMLLAEEWHHDYPRQQAAYPVASLRENKYWPPVARVDNAYGDRNLVCACLPVEAYA
>SEQF1086_CAE40577.1 putative GntR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTVETNPNPLGPIKAVRSRDLLADALREQILSGARPSGVALPSERELTEETGLSRAAVRDALRVLESEGLIETRQGRYG
GSVVKLPANDALARPVALFARARGISLQEMIEARVAIEPTIAELAALRRTPEDLQALIQATDLLQEALPHVEQFLDLNVR
WYFALADACHNDLLRAFIVSIAGLILTATSREGQTPEPTRRLILQSHRRVVEAVIAGDAPAARRRMERHVAGYQEHYERL
GLTPSA
>SEQF1086_CAE40578.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAVSSSVPPTPLGGVRVLDLSKVLAGPLCTQYMADMGADVIKVEAAGQGDDTRGWPPFQDGQAAVFLSCNRNKRSIALD
LKSAHGRAVVQRLAAWADVVVHSFGPGVAQKLGVDWEALSEINPRLVYCAISGFGPVGSLSHGKGFDVVLQAFCGMISIT
GETEGGAVRSPFSPVDQATGLHALIGILAALRQRDASGRGVTVDASLFDTALGFMGYFMQGYWARGTEPARAGAGHESLC
PYQDFATADKPIILGIANDALWRAFCALAERPELASDPRFATNAQRVANRAQTLAATRALLAARTRGEWLPALEQAGIPC
SPIHTLVEVDAHPHTRESGMVFDYPETGTDAGPLKGVAQPVRFDGMRLTTPKRPPSLNQDWASVLADAGYSDPEVRDLLQ
QMA
>SEQF1086_CAE40579.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMNVLIRRALCAAIASLAAAAAHAAYPEQPVRIVVAFAPGSGTDNVARYYATRLSEELKQPFVVENKPGANGSIAATQVA
RTQPDGYTLFLGSNSTLSAAPFLFKKLPYEPLKDFTAVARLSDIPSMLVVGADSPIRDFDQFIGKARAEPGRVTWANANT
AHLAAGMALTKQAQLDMISVPYKSSPQALTDVIGGQVTAMVVDTSAGTAFVQQGKVRALAVTTARPVAAMPGVPSMSERF
PGIDVYSWLGIVGPAGMPDEVVTVVNKAILKINASEDTVRFLRENAGAEPPPSSSPAEFTQFMHAQLEVWRKLLRDANVE
PM
>SEQF1086_CAE40581.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE40583.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE40584.1 putative restriction endonuclease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPVARHGVGERVVQCPPMLTTSDPLPHPLPHPLLHDGVVAAVVRLCADATLDFPARCARLEAAIRACTRDQIIEHLQHGG
VISECIGHDSSEEKLLAKYSDVLLACALGELGFQARVLAERSDAADVYAECGDQRIVGDGKIFRLSRTALNPKDYKVPSL
KKWRQGAGYSADYSVLLAPSFQYPLSRSQLYAQAIDNNVLLLSFEQLAFLVRHHQPGRDYRPLWEYAGTRAGQDTAAWKE
ARQYWHGLNQLVARLAGQTEQALRDSYAARRQLLQRQFDDEIAHWDAEAQRIRGLSREQAIAELLVSKKIQARVDLMRGA
QRQLTLQLDDARA
>SEQF1086_CAE40585.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQLTIRKLAYTLAFSTLVLAGCTTASKKTDGQAATPADQASSQQASAASVEFYVAQAKAGDGLMEVKVPDGSLYMQRQPV
LTRADLTEAAALVDRQGQNFVGLRFTEAGARKLNDISSKNIGNMLALVIDRELVAAPRIAEPLNRGVLAFGVPSAKAASE
IAAKIRGDAGAPAAGVPAAPAPKPAPKP
>SEQF1086_CAE40586.1 thiamine biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNANPTFLAATAEVDAAAVAPLPKSRKVYETGSRPDIRVPFREIEQADTPTMFGGEKNPPLTVYDTSGPYTDPQASIDIR
RGLPALRRAWIEERGDTEVLDGPTSDYGKERLTDPKLTAMRFDLQRPPRRARAGANVTQMHYARRGIVTPEMEFIALREN
LRREHYLETLRASGPDGEKLAKRLLRQHPGQSFGAALPSAITPEFVREEVARGRAIIPANINHPEIEPMIIGRNFLVKIN
ANIGNSAVSSGIGEEVEKMTWAIRWGGDTVMDLSTGKHIHETREWIIRNSPVPIGTVPIYQALEKVDGKAEELTWEIFRD
TLIEQAEQGVDYFTIHAGVRLPFIPMTADRMTGIVSRGGSIMAKWCLAHHKESFLYERFEEICEIMKAYDVSFSLGDGLR
PGSGYDANDEAQFAELKTLGELTQVAWKHDVQVMIEGPGHVPMQMIKENMELQLKHCDEAPFYTLGPLTTDIAPGYDHIT
SGIGAALIGWYGTAMLCYVTPKEHLGLPNKKDVKDGIITYKIAAHAADLAKGHPGAAIRDNALSKARFEFRWDDQFNLGL
DPDTAKEFHDETLPKDSMKVAHFCSMCGPHFCSMKITQDVRDYAAAQGVSEKDALQQGMQEKAVEFVKKGAEVYHRT
>SEQF1086_CAE40587.1 putative aldehyde dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHANFIDGAWLDGVDARPNINPSNLADVVGDYAQADAAQAGMAIAAASAAAHAWARSTGQRRADVLDAVGTELLARKEEL
GRLLSREEGKTLPEGVSEVTRAGHIFKFFAGEALRIQGEKLPMTRPGIEVDVTREPVGVVGIIAPWNFPIAIPAWKIAPA
LAYGNTVVFKPADLVPGSAWALAEILSRAGLPAGVFNLVMGRGSVVGQAILDDRRVNAISFTGSVATGRRVAEAAIGRMA
KVQLEMGGKNPLVVLNDADLKVAVDCAVNGAFFSTGQRCTASSRLIVQKGIYPRFVEAVRERLQGLKVDDALAPGTDIGP
VVDRSQFDQNLAYIAIGREEGAQLAWGGEPLKRANEGYYLAPALFVDCDNSLRIAREEIFGPVAAVIPVDSYEQALEVAN
DTEFGLSSGIVTTSLRHATHFKRESQAGMVMVNCPTAGVDYHVPFGGRKGSSYGPREQGRHAAEFYTSVKTAYTAA
>SEQF1086_CAE40588.1 putative oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSASEFSQRLTQALGADVVATSPADIEPWLSDWRGIYRGQAQAVVRPRTTDEVARCLALCQQAGVPVVPRGGNTGLCGGA
TPDAAQANVVLSLERMNAIRALDTVANTMVAEAGCILGNLRRAAQDANRLLPLSLAAEDSSQIGGNVATNAGGVNVVRYG
MARELVLGLEAVLPNGEVLHGLRTLRKDNTGYDLKQLLIGSEGTLGVITAVALRLFPRADTRTVVLAAVESPRQALQLYE
LLFEQCGARLQAFEYFSGDCLDLVLTHVDGLHEPFAQRYPAYVLVELADTIDEAALNALVEEVIGAALERELCLDAAVSA
SLAQLQTLWRLREEISEAQRADGPHLKHDVSLPIERIPEFMETAAARVRERYPDIRPFIFGHFGDGNLHYNLSRPAGAPR
EWAAEQGDAVTDLVLDEVLRYGGSISAEHGIGQLKRDHFLHSKDPLELRLMREIKRVLDPAGIMNPGKLL
>SEQF1086_CAE40589.1 putative GntR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLQPTPTLTDQVAGQLARAIADGAYAVGAKLPTGRALAQQYGVSAAVIREATERLRAQGLVQSRQGSGCTVVARTPAGGF
QVPAGGLDRAHLARVYELRMELEGGAAALAARRRGAADLDRMRQALQALQREPIEPEQGVVHDVGFHVAIATATANPYYL
QLLQYLNLQLRQAVETARANTRRQGDPVHAVHEEHLAIYRAIERGEPEAARAAAQHHLLGAAARLQLDMNL
>SEQF1086_CAE40590.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVSEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
>SEQF1086_CAE40591.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE40592.1 putative hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNQVEMTEFPVGKPEEALYGVASTPDGALWFTLAKGNAIGRLSPDGEVSRFPLPHADGQPTTITCGPDGRPWFTLSSANA
VGRLSPDGALRMFELPRPASRPFGIAAGHDGCLWFAEMAGDRIGRITIDGDIEEYDLPVKGGYPSCMAAGRDGLMWFTLN
QAGAIGSISATAAPRIFPLGAADAAPVGIASDAQGALWIAQAGNGAIARFDAGGRITEFPLHSRAARPHALAADAAGNLW
FTEWGANRIGRISEAGDTAGYELAAPGSEPHGIAIDPHGCVWAALETGSLVRLQASPRD
>SEQF1086_CAE40593.1 putative acetyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTASTPTAILIRDSRDADLPAIAAIYAHHVLHGTASFELEPPGLEALRERRAAVLAHGLPYLAAECGGEIVGYAYATPYR
PRPAYRHTVEDSVYVRAGHAGQGIGGKLLAALIDRCAAGGWRQMLAVVGDSANTASVALHARHGFDTIGTFRSVGYKHGQ
WRDTVLMQRALGEGDATPPSRP
>SEQF1086_CAE40594.1 Conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQNHQRRALVLFSGGQDSTTCLAWALERYAHVETLGFDYGQRHRVELDARQVVLRELRANFPDWAQRLGDDHLLDLGILA
QVGDTAMTSDREIEMQANGLPNTFVPGRNLLFLTLAAALGYRRQLDVLVGGMCETDFSGYPDCRDDTIKSQQVTLGLGLG
TRVTIETPLMWLDKAQTWELADRLGGQALVDMVIEHSHTCYLGERGQRHDWGYGCGHCPACALRKNGWERWVAGAAHAD
>SEQF1086_CAE40595.1 phosphoenolpyruvate carboxylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAYNAPVSNCQFRLTHILPIPQRHGAPTDPFQMNAIRQQSDSAEPLRHDIRLLGRCLGEVIQACEGKRVYDTIETLRRT
AVRFRRAGDPADDKLLQARVKQLRGNDPNSVARAFSYFLHLSNIAEDRDQNRRQRERALAGAGPERGSLRQAIESLKAQG
VNNARIRRLLSEACVMPVLTAHPTEVQRKSTLDVHREISSLLVQRERELTADELSELDLALIGQVATLWQTRMLRYTRLT
VADEIENALSYYRSTFLNVIPRVYGDLARLLNREPVKPFTPPPPPLEPFLRMGSWIGGDRDGNPNVDAATLERALLRQAT
VLFEHYLQEVHALGAELSASTLLIEADPALLALADAGGDDSPHRRDEPYRRALIGIYARLAATARHLTGQKLARRATVPA
APYDTPDALAADLAVIAASLSARHGAPIARLRLSGLQQAVTVFGFHLATVDLRQSSDVHERVLAELFARAGDGIDGQAVD
YLALDEAARVAGRELAHARPLASPWIAYSEETASELAVLRAAAAGRARYGRQAVLQSIVSHTETLSDLLEVLVLQKEAGL
IAPPGETIAPGDGLMVVPLFETIPDLQRGPEIMAAWLDLPEVRQRVRLAQGDTQEVMLGYSDSNKDGGFLTSNWSLYQAE
RALVDVFSARSVRLRMFHGRGDSVGRGGGSSYDAILAQPPGTVAGQLRLTEQGEVIQSKYKDAEVGRWHLELLVAATLES
SLAPQAAATSAEDAHMQQHAPAMSFMSELAQRTYRGLVYDTPGFADYFFAATPISEIAGLNIGSRPASRKKGQHIEDLRA
IPWGFSWAQCRLMLTGWYGMGSAIEAYLETGAQGAPRSRRARLAQLREMASDWPAFRTLLSNMEMVLAKSDLAIAAGYAQ
LVPRRGLRERVFGAITAEHGRTLAMLRLLTRRDLLADNPGLMASLRERFAYIDPLNYLQIELIKRHRAAQRRAGDDADIR
VPRAIHLTINGIAAGLRNSG
>SEQF1086_CAE40596.1 autotransporter subtilisin-like protease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMPPPAVPPQLPEVPAADLPRVRAPLSTYRRPQRTDFVTPTGGPFFAKQDKALNTIDLKMAHDLKLRGYRVKVAVVDEGV
RSDHPLLNVEKKYGGDYMADGTRTYPDPKRQGRHGTSVALVLAGQDTDTYRGGVAPNADLYSANIGTRAGHVSDEAAFHA
WNDLLGHGIKIFNNSFATEGPEGEQRVKEDRNEYHSAANKQNTYIGRLDRLVRDGALLIFAAGNGRPSGRAYSEVGSVGR
TPRVEPHLQRGLIVVTAVDENGRLETWANRCGQAQQWCLAAPSTAYLPGLDKDNPDSIHVEQGTSLSAPLVTGAAVLVQD
RFRWMDNDNLRTTLLTTAQDKGPYGVDPQYGWGVLDVGRAVQGPAQFAFGDFVARVTDTSTFGNDISGAGGLVVDGPGAL
VLAGSNTYAGRTTIKRGTLDVFGSVTSAVTVEPGGTLTGIGTVGTVTNQGTVVNKEAGLHVKGDYSQTAQGLLVTDIGSL
LDVSGRASLAGRLHVDDIRPGYVGGDGKSVPVIKAGAVSGVFATLTRSPGLLLNARLDYRPQAVYLTMRRAERVHAAAQR
GADDGRRASVLAVAERLDAAMRELDALPESQRDAAAPAAAIGRIQRVQSRKVLQDNLYSLAGATYANAAAVNTLEQNRWM
DRLENHLAQAGGERVAAIAEYRHGQLRWRPDGLQGRQRGNGIMLGLAREVSAGLSLAAALTHSRTHWDESSGAPARDNAA
MTTPGVLLGARRAWEDGWFVQGALGYSRYRNQATRHISLGDAGHTVGATARGHVWQADAGLGRQWTLAPGHTLAPRAGLQ
LTHLRQQGFSESGAQGLGLRAHALTRTVPTLWAQLQSRHAFMLGATPMTAQLQLGVWHDLRARRYAASGGFAGLAQDQGA
SGYWPVPRTRVQGALGLRAEFAPGLVLGLGYTGQLATHWVDHQLSASLTYRY
>SEQF1086_CAE40597.1 3-hydroxybutyryl-CoA dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDNPIQNLAVVGAGAMGSGIAALFASKGFDVVLIDPMEGALTRAAQVIERQLGVYAPDAIAPAMQRIRMDAGLEAACSAQ
LVIEAVPEKLALKRDIFARLDTLCDPQAIFATNTSGLSINDIAQAVTRRDRFVGTHFFTPADVIPLVEVVRNDDTSEQTV
ARVMDMLRAGGKRPVLVRKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALSGPLEQRDMNGIDVH
YAIASYLYQDLENRTTPSELLENKVQAGELGAKSGQGFYAWPPERRERVLRDKSAALAELAAWLENRKPV
>SEQF1086_CAE40598.1 short-chain fatty acids transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNKLTSFFTELMRKYLPDPFVFAIALTLLTVLMAFGIEGQPLDQITREWGKGFWSLLAFTTQMAVILAMGYVLATAPLTD
RLLDRIVSHVHQPRTAIIVATLVGGVGSYLNWGFGLVIGGVVAKKLALKVKGVHYPLIIAAAYSGFTMYGLGLSASIPVL
VTTPGHPTADQMGVIPLSETIFSLPMLITSLVIIVTLPLLNAWLHPKQGEQVVEVDPAIDQSSAPAKTADELTAEDTLAS
RLNNSRILSLLIGLLGIAYVVFYFMDGKSLDLNLINFIILFLGIILLGTPAAYVAKLNEGIKTISGIILQYPFYAGIMAI
MAIMAGSGLVATISKVFVDVASPGSLPFWGLISSFVINFFAPSAGGHWVIQGPFMIDAAKEIGSALNQTTMAVMLGNAWN
DLVQPFWILPALALSKLKLRDVMGYTVIMMLWVGVIHIAAVLAWGYLTH
>SEQF1086_CAE40599.1 probable short-chain dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPTAYLVTGASSGISAAIARALLDAGHRVVNIDYRLPADAPQGLASYQADLTDEAQTLAVAREVTEAYDIVGLVNNAGA
TRPGTADTATLADLDYVVALHLRTAMILVQAALPAMRAAGYGRIVNMSSRAALGKPERVVYSATKAGLIGLTRTLAMELG
GDGITVNAIGPGPIATELFRNSNPEGAPRTQRIIDSIVVKRLGTPEDVARAAMFFLSPDNGFVTGQVLYVCGGTTLGVAP
V
>SEQF1086_CAE40600.1 probable transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MASRLYNGARSERLHFHLLHTGSMVEQVPQQPGVSYVQSFARGLSVIRAFGPQRPQMTLSEVAAATGLTRAGARRILLTL
ASLGYVAQEDRRFTLTPRILELGYAYLSATPLWDLALPYMEEVAETTRESCSVSVLDGVDIVYILRLSTHKVMTINLAVG
SRLPAWVTSMGRVLLAGLPEAEQDRLLDESQIQPYTPATVVDRAELKRILAGVRADGYACVVQELEPGLQSVAVPIVDRG
GRVIGAMNVSGHANRYSREEMLQAFLPPLRSAAEHINQALRRR
>SEQF1086_CAE40601.1 3-oxoadipate CoA-transferase subunit A [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MISKLVATAADALADVPDGATVMIGGFGTAGQPMELIDALLEQGAKDLVIINNNAGNGTTGLAALLGAGRVRKIICSFPR
QVDSQIFDGLYRAGKLELELVPQGNLAERIRAAGAGIGAFFTPTGYGTPLADGKETREINGRQYVLEYPLHADYALIQAE
RGDRWGNLVYRKTARNFGPIMASAARVAVAQVRQVVELGQLDPEAVVTPGIFVKRVVQIDAPRGAKEQ
>SEQF1086_CAE40602.1 3-oxoadipate CoA-transferase subunit B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSKLTRDEIAARVAQDIPEGAYVNLGIGLPTLVANHLPADREVILHTENGMLGMGPAPAKGQEDYDLINAGKQPVTELP
GCSFFHHADSFAMMRGGHLDICVLGAFQVSQQGDLANWHTGAPDAIPAVGGAMDLAIGAKDVFVMMELQTRDGQSKLVQA
CTYPLTGVRCVSRVYTDMAVFDLRAGQITVTDLFGDTTREQLLALTGLPLKFAD
>SEQF1086_CAE40603.1 methylmuconolactone isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLFMVQMQVNLPPDMPAERADKLKADEKALAQQMQRDGKWRHLWRVAGRYANVSIFDAADNDELHQMLSALPLFPYMDIQ
VTALARHPSAI
>SEQF1086_CAE40604.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPYIIETFDKPGSLAVRQQHRNAHLQFLDQHKHLLLACGAKLDDDGKDLGGGLYVVDVDTRAAAEQFIQADPFHLAGLFE
RVAITRWRKAYVDGTSYL
>SEQF1086_CAE40605.1 3-oxoadipate enol-lactone hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSYADLSQARLYYVIDGPADAPVLVLSNSLGTCADMWARQIPELSRRFRVLRYDTRGHGKSSVPDGEYSFAQLGGDVAEL
LEHLRIERAHFCGLSMGGPTGMWLALERPELIDRLVLCNTAARIGSAEGWSARIAAVRQDGLETMAPGLVERWLTPQYRA
AEPGLVQVLVDMLRRIPDAGYMANCAALRDADLRERVAAIRARTLVISSTHDLAATPQDGKALAAAIPGARYVELDTSHI
SNWEQPEAFTRALTGFLTE
>SEQF1086_CAE40606.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNGMQRWKQRPPGSNWGDFGPDDQLGRLNLITPAEVLKAAQEIRAGRSFCLSLPLDLPGGNVLNPRRHPPQLSPTRLQDT
PYVNFPLRNINPDAVDVLSDDQVLLSMQYSTQWDSLAHVGALFDADGDGRAELCYYNGYRAGIDIVGPADADHAGCGCNT
GGPSSALKLGIENLAQHSVQGRGVLLDLARHYGAGRTLVGYKELTQALAADGIEIESGDMLVLRTGYAKAVVGMNGKPDA
DVLHQYGAALDGTDAELLQWITDSGIAAICADNYAVEAYPARERQGPRAMLPLHHHCLFKLGLPLAELWYLKDLAEWLHA
NGRHRFMLTAPPLRLPHAIGSPVTPVATV
>SEQF1086_CAE40607.1 phosphate starvation-inducible protein precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MISRVSKFAACTLVSLFCSTAAWAQASASKELTPQQKRMAECNKSATGKTGDERKAYMSSCLKGEEPANKLTPQQQRMKD
CNSRASEQALTGKKRKAYMSTCLSGKS
>SEQF1086_CAE40608.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE40609.1 beta-D-hydroxybutyrate dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNPARPLHGRCALITGAEAGLGLAIADTLARSGADIVMHCLQANESARQAQAALAREHGVRVLLLQADLRDVDQIEAMAA
QALAELPRLDILVNNAVVRHFEPAHELPRAHWDESLAVNLSAAFHLARLALPGMLAQGWGRIINLSSVYGAGAAANRVGY
VTTKTALLGLTRALAVETAASGITSNAVAPGTAPTPAIVGRITEIARRDGVAQEQAEREYLAARQPTGRFVAMENVAALV
AFLCSDAGRDITGATLPIDGGWTAA
>SEQF1086_CAE40611.1 4-carboxymuconolactone decarboxylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALRPEFQTEQFQKGLAVRRAVVGDAYVDKSLNSADDLTASLQKLVTEYCWGEVWTRPGLERKTRSFLNLAMLIALNRPN
ELRLHLRGAINNGVTKDEIVEVVLQAAIYCGVPAALDAMKAVREVVETMEKEGAFA
>SEQF1086_CAE40613.1 GntR family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPFPFCNTNRMTSPAAPEGEFKVQRVASVLRHSVTESIRNAILVGRFRPGERLPERELCEMTGVSRTLVREALRQLESEG
LIVVIPHRGPVVERLSPEQARGIYQVREELEGLACQLFAEHATEPQLAALQEAFQALKRALTRGTPLEQIAAKNAFYQQL
LDGAGNEALTTTLRLLNSRVMLLRSTSMQAPGRAKHSVAELSNLLQALVARDGKAARKAGSLHVRNAASVAIAILQDSLA
DAAATAE
>SEQF1086_CAE40614.1 putative solute-binding periplasmic protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQRFPLPRGFQAALAAAALCTASWSGAAAAQTYDLTMAVITSPGDGYSILTASVPERVAKATDGKVKVTVSDSLVPPAQ
IATAVREGRVDMSAALHTYLAADEPRMGIFNLPGLINNIQEYKQVCDAFWCEDTRKIWKDKWNAIVLAEGAWCTQQLFSK
DPIHKVEDFKGKRLRVHNPQTAEVVNALGGKPVAMPTTEIFPALERGVIDGLFISTCVGGSLEFWRIAKNVQNWSLGPIN
GWAILANPDSWQKLPADVQKQVQGAMDALQQEAFGNYDTFVSNAQQEMMKKGVTFWVAPEEERAKLMQQQYIGPSYEAWN
KRAKQVGFDGPAYLDRVRTTLGKSASN
>SEQF1086_CAE40615.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSIEMPAPVMPIEPAELAGASPYPLAIDQDFCLIRWMAAISRACGALATVALLLMALSMCYEIFSRYLFNAPTAWATEI
SGYLLVATVFFGLAAAQASNSHVQVELWIDRLSAPVRLRVELLCQWLALLFCVVLGWQMASFNVREYLNDTRDWGLLSTP
QWMPELAVSVGMVVFCMSILVDIYRLSPPAQAWRRWLTPALLALLAAALVALGANAVPMAAGGRFDWGMALIVAALLACA
WAWSGVRTLAHVVLVVGGCAVLYGLARGQSLGWVAFLLVASMMLLLFLGVRIGVALGLVGLFGVYFLLSRPQLSLLAERA
WSSTNTFTLTAVPMFIFMGGLLLRSGITAGMFDALVRWFGRAPGGLAHASAGASAVFAAVSGSSLATAATLGKVACPDMI
ERGYSPRLTYGVAAAGATLGILIPPSIPMIIYGTTVGASVTHLFLAGMLPGLLLMACFMLGALVWALAVPGSAPVARAYT
LREKLSASRGMVPFVAIIGAVLGSMYTGVATPTEAAAIGAVSAFVLCLVRRQLSWRALFEIAHDSAKVTALLLLIVVGAG
IFSWVFDYLRLPREVVNLIQGADLSPALIVAAMVLAYLVLGMFVESIAMMLMTLPVTYPIAMSLGLDPIWFGVFLVLMIE
LGLITPPVGMVLFVLRSMNEKARFTDIIRGALPFVLIILLFLCLIYIYPQIVMWLPQQVK
>SEQF1086_CAE40617.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKKRIWGTLLAAAMTVGSGAAHAGYPDKAVRIVVPFAAGGGVDALARPFAKELGDILGQSIVVENKPSNTGQIGATDVAR
AAADGYTLLLSSAAFATTPAFYPQVPYDPVKDFSPVMIMAAAPQVLVASNRFKAASLPDVLAQARQSDRINFALSASTGI
QALATAMLAGQGGVTFMTIPYKGAGAAFMDLISGEVDLMIDNPASSLVHVRAGKLRVLATTGSKRMAILPDVPTVAETLP
GFEARNWFVLAAPQGTPPAVIQKLNEASARALNTPAMRQMLERDGIDLVADSPAHAAAFLQDEIAKWGKVVKEGNLQP
>SEQF1086_CAE40618.1 2-amino-4-hydroxy-6-hydroxymethyldihydropteridi ne pyrophosphokinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNGSPASTLAYVGLGASLGDAAATLRSVLAELAAAPGILACKASRLYRTAPVEAQGPDFVNAVAALDTTLAPLDLLDLLQ
ALEQRHGRERPYRNAPRTLDLDLLLYGEQAIDHPRLSVPHPRMHERAFVLAPLCELVPALRLAQGDCAALLAALEDQAIE
PLR
>SEQF1086_CAE40619.1 poly(A) polymerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MITETIRKFVGRLFAPALRGPQRIGAERHGIDRRNVSRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNAT
PEQIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGRILRDNVFGSQEEDAARRDFTMNALYYDPHT
EEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLNGSIDTATRQPIRTMASLIENVPASRLFDEMLKLL
TCGHAMDCLRQLRNDGLHHGLLPLLDVVLEQPGGENFVELALERTDARVRAGKTISPSFLFAALLWQLVDVRWKQLRAQG
EHNIPALVQAADSVLDEQTEKLAIQRRFSSDMREIWFMQPRFERRAGKTIYRMLEQPRFRAACDFLQLRAAAGEFDSVLA
QWWMDLANGDDATRAEMIEETAHLPRETGDAPAQKRRRPRRRPSNRPREPQ
>SEQF1086_CAE40620.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTRRLALFDLDHTLLPLDSDYQWADFLARTGRAGDPAEARRRNDDLMERYNRGELTAEQAAEFMLGLLAAHSPVELAAW
HEEFMRDVIRPSLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGK
VVRVNQWLAGMGLALGDFAESYFYSDSVNDVPLLEAVTRPIAANPSPGLREIAQARGWQVIDLFDHLEDAKS
>SEQF1086_CAE40621.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRQLLLDVLPAPAPALNNYIAGPNGQALAAAHALTAGRAIYLWGPAGCGRTHLLRGLSARPEAIYIDAARAAQSLRELA
EADSTAPMPRLVAVDDVHRMDDARQAGLFALYNRWRESAATGRAFALAVSGDRAPMSLPLREDLRTRLGWDLVFRLDPLS
DADKLAALTAQAAERGLQLAPEVINWMLTHHERDIRKLAALLDALDRYSLATGRPITIPLLRAMLADPHSQAT
>SEQF1086_CAE40622.1 phosphoribosylformylglycinamidine cyclo-ligase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTNQHSAPLTYRDAGVDIDAGDALVDRIKPLAARTMRPGVLAGIGGFGALFEVPKKFREPVLVSGTDGVGTKLRLAFDWN
RHDTVGIDLVAMSVNDILVQGAEPLYFLDYFACGKLSVDTAAAVVGGIARGCELAGCALIGGETAEMPGMYPDGEYDLAG
FAVGAVDKSAIIDGKSIQPGDVVLGLASSGAHSNGYSLVRKILERAGARPDQDFHGQPLVDVVMAPTRIYVKQVLAALDR
HGPAIKGLAHITGGGLLDNVPRILQPGMAAQLQRDGWEMPKLFQWLQQQGSVADAEMHRVFNCGIGMVLVVAADQADAVA
ATLREQGEIVNRIGEIVPQQDGMAQTVVV
>SEQF1086_CAE40623.1 tRNA delta(2)-isopentenylpyrophosphate transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTPRAIICLAGPTAAGKSASTLALAQRWPLEIINVDSATIYRGMDIGTAKPSAAERAQVPQHLLDIRDPAQSYSAAEFRA
DALRLIAEIHARGRIPLLAGGTMLYYKALREGLDDLPQADPALRAELEARAARLGWPALHAELALLDPATAARLSPNDSQ
RIQRALEICRLAGQPMSALLQGERRGDAPSPYRYVTLSLEPSERAALHARIAQRFDAMLAAGLVEEVRGLHARPDLHPGL
PSVRCVGYRQMWSYLDGDIDLDTAREQGVAATRQLAKRQLTWLRAQPERVIIDCLAGDAVARTVDAMARALPD
>SEQF1086_CAE40624.1 DNA mismatch repair protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDRRPIATLPDLLISQIAAGEVIERPASVLKEILENAIDAGARAIEVRLEGGGIRRIAVTDDGSGIPPEELPLALTRHA
TSKIRSLDELESVASMGFRGEALASIASVADLTIISRTRGAEHAWQIDGGSLQVSPASGPPGTTIDVRQLFDRVPARRKF
LRSEATEFGHCVDAMERIALAHPEVAFRLFHHDRAQRQWLPADHGQRIRDVLGAEFVGHVLPVLAAAGAIALMGMVTRPT
AARARADRQYLYVNGRFVRDRTVSHALRSAYADVLHGDRQPAYVLYLDIDPGAVDVNVHPAKHEVRFRDSGAVHRFVSQV
VGQTLAQTGGAEAVPAGVPDGAAPDTAYAGEPAAAAPGLAEPRAPYPAAYPSPGQSPYQGSPARPHTQVPFRLHGEPAGI
PATDWQSLYRPLPGDAAPAATALRAAPATPLPTADEHPLGQALAQLHGIYILAQNSRGLVLVDMHAAHERVVYEQLKRAL
DDRALPRQDLLVPVVFHAAEKDVALVEEHETQLNELGFEMRPSGPASIAVRSVPALLARGDIESLARAVLRDLGAVGVSR
LLTEQRNELLSTMACHGSVRANRRLTLEEMNALLRQMEITERADQCNHGRPTWVQWSVNDLDKLFLRGQ
>SEQF1086_CAE40625.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLDFFNMVLHIDQTLGIWVEQYGVWVYLVLFLIVFAETGLVVLPFLPGDSLLFIAGAFGATGHMDPVLTAALLIVAAISG
NTVNYTIGRYIGPRVFSMNLRFLDRNALMRTHAFYEKHGGKTIVMSRFIPVIRTFAPFVAGVADMRLARFQLFNIGGALL
WVISLVAAGYFFGNIPLVREHLNTIVLIGLGAAIVPVVIGALVRLLQVRRGQ
>SEQF1086_CAE40626.1 N-acetylmuramoyl-L-alanine amidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRTWPADEYTRVTLELDSELKAEHFTLENPHRLVVDIEGLSVNAALNDLVSKVRHDDPYIQGLRVAQNRPNVVRLVFDLK
QSVAPQVFTLKPVADYQYRLVLDLYPKVAQDPLMAILNKQSGPDVDDPLARVLDEIARNQPAPDQPAAPLARGQEPAPAL
PAPPIKPLPAPGRSASRKRMLTIALDPGHGGEDPGAIGRSGLREKDVVLRIARRLKTLIDAQPYMRAYLTRDDDYFVPLH
VRVQKARRVRADLFVSIHADAFIKPTANGSSVFALSERGASSTQARWLADKENAADLIGGVNLGSHDRQVAKVLLDLSTT
AQINDSLKVGSAFLDEIKKINRLHKNRVEQAGFAVLKAPDIPSILVETAFISNPKEEALLRSAAHQEKLAQAMMTGIDRY
FTANPPLARVGDVS
>SEQF1086_CAE40627.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAPPTTLCLHLPDEAATENLARQLAPLVDGRRGGQPGGQIHLQGDLGAGKTAFTRALLRECGIQGRIKSPSYALLESYK
VSNLYFYHLDFYRFSDSREWLDAGFRDLLRDDAVVLIEWPERAAGLLPPPDLLISLAYADQGRDASLTAHTARGQTWLNA
IVPPPTARSLPAPPPADA
>SEQF1086_CAE40628.1 fumarate hydratase class II [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTRTEKDTFGPIEVPEQHLWGAQTQRSLHFFAISTEKMPVPLVAAMARLKRAAAKVNAELGELDPQVADAIMRAADEVI
AGKWPDEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGERGEGRKVHPNDHVNRGQSSNDTFPTAMHVAAAVEVEHRVL
PALKALRGTLAAKSAAFYDIVKIGRTHLQDATPLTLGQEISGYVAQLDLAEQQIRATLAGLHQLAIGGTAVGTGLNAHPQ
FSAKVSAELAHDTGSAFVSAPNKFQALASHEALLFAHGALKTLAAGLMKIANDVRWLASGPRSGLGEISIPENEPGSSIM
PGKVNPTQCEAVTMLAAQVMGNDVAINVGGASGNFELNVFKPLVIHNFLQSVRLLADGMVSFDKHCAAGIEPNRERITEL
VERSLMLVTALNPHIGYDKAAQIAKKAHKENLSLKEAALALGHLTEAQFAEWVVPGDMTNARR
>SEQF1086_CAE40629.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSENSSLRRDAEAPLLSIFLPGSMSVALLVLPDFMLVALGWALRHKLGFSREFFAGTERMVYFVLFPALLFQSILRTPIS
AGHAMQLLQATAALMACGVALAWLAGPVLRPAPVALASAAQCGYRFNTYIGLALAASLAGGPGQTIMALIVGFAVPMANV
AAVYGLARHSGNGLLRELARNPLLVSTLLSLACNLAGLSLPGPIDTVMARLGAAALALGIMCVGASLAWEGGKGHGRLIG
WMLAVKLAAMPSAALGIAWALGLPALETRMLVLFSALPTASAAYVLAMRMGGDGRMVAVLISLGTLASAATIPLWLTAAA
GLGAPN
>SEQF1086_CAE40630.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNKVRTLVQAIAVATGLVAAAGAQAADAYPSKAIRVIVPFAPGGSTDIIARLVTQRMSQELGQPMVVENKGGAGGAIGAS
EAARAEPDGYTLSIATVSTMAVNPACRPKDLPYDPIKDFQPVTNFANTANVVAVNPKFPAKDFKGFLEELKKNPGKYSYG
SSGTCGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNLPSSMPQIQAGKLRAMAIAWPTRIDAIKDVP
TFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQGSAPSGNTPEEFAKEIKEQYDWAQDVVK
KQNIKLD
>SEQF1086_CAE40631.1 LysR family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRLRHIEIFEAIRRTGSLTEAAAALHISQPAASKLLAHAEAQLGFKLFERVKGRLVATREAEILAPEVARLNQDLGSVRR
LAASLRDRPHGHLRLGCAPALGLGLLPGVVRASRDAQPGITFDIHTHHSAELVQGLLAHELDLAITFDANNHPGLTRTSL
GHTELVHLSRLPGAGTTRLQELGGETLIVLDARDASGSLLQMALDAQGLAPRVAIQVQTHYVACALAEAGCGDAVVDAIT
ARAMLRPGMALRRLEPALRVPISVMTRSQDALSTLHHDFIERLRQACSVLQAQPAPQPE
>SEQF1086_CAE40632.1 gamma-glutamyltranspeptidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPLRTLLAALCAAAICQAPAWAREAPGVAREDVNPEIASARSERAQAHAQRYMIATANPLASEAGYRILRAGGSATDAII
AAQLVLNLVEPQSSGIGGGAFMVHYDRGAGELRVYDSRETAPAAARPDRFLREGKPLSYAESVNNGRAVGTPGLLRGLEL
AHRQHGKLPWQALFEPAIAMAEQGFAVSPRLHESIAGDKALAAQPAAARYFYGPDGQAWPVGHRLRNPEFAATLRSIARE
GADAFYRGPIARDIVAAVRAHPTPGDLAEADLAGYRAVVREPVCGLYRGYRLCGAPPPSSGPLAVLQMLGELEQYPLARM
RPGSVEAVHYFSEAGRLAFADRDFYVADPAFVDVPVRALLDPAYLRQRGALIRPDRSMKTALPGDPQGLLAERARDDAIE
VPSTSHLVAVDAAGNVVSMTSTIEAAFGSKIFVRGFLLNNEMTDFSSSYRDPEGRLVANRVEPGKRPRSSMAPMIVFRAG
KPVLALGSPGGSAIINYVAKTLVGVLDWKLDVQQAIALPNLGSRNKETELERGTALEALAPALRRMGHEVRITDFPSGIQ
GIVIGPHGLAGGADPRREGLALGD
>SEQF1086_CAE40633.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAVAALPPGALQGCRVIDLSRVLGGPYCTQILADHGADVLKIEPPGGDETRGWGPPFSGQTASYFIGVNRNKRGMALDLS
QPAGQELLRGLLADADVLVENFKPGTLEKWGLGYDTLSQAFPRLVHCRVSGFGADGPLGGLPGYDACAQAMCGLMSVNGE
ADGPATRVGLPVVDMVTGLNAAVAVLLALQERQRSGLGQFLDITLYDCALSLLHPHAPNYFYSGRVPTRTGNAHPNIAPY
KTLPTGAGPIFLAVGNNRQFAALADALGAPQLAQDARFASNAERLAHRDALCAALTELLRPHEAASLAERLLRLGVPAAA
VLDVAQALDHPHARHRGMLLEAGDYRGIASPIKLSRTPARLRSVPPALQEPAGA
>SEQF1086_CAE40634.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQQLIRSLVLAAGLALLGGAAAPALADYPDRPVTLVVPFPPGGPTDAMARRLAEGLKTQLDQTVVVENRGGAGGNIGAEL
VAHAKPDGYTLLFGTSGPLAINISLYKKQNYDPRTSFAPIVRIGHLPNILVVHPSVPANNVQELIAYAKANPDKLSYASS
GNGASSHLAGVLFNRMAGTRILHVSYKGTGPALNDLLGGQVSMSFTDILTALPHIQAGKLKAIGLASAQRSQALPELPTI
AEQGLAGYDVSVFFGIVAPKGTPDAIVQKLNAAFIAALDAPEVRDTLRKQGIVPAPERTPQALAGFINEEVDKWGELIRA
AQISLD
>SEQF1086_CAE40636.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE40638.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALSPQTERFVLHFGEMGSRWGVNRTVGQIYALLFLSPKALHADDIAEALGFSRSNVSMGLKELQSWRLVKLMHQVGDRR
DYFETPKDVWEIFRILMEEKRKREIDPTLTLLRDTLLERPADEAQVYAQQRMHEMLELIELSTGWFDEVQRLPPETLQNL
MKLGSKVQKVLGFAGKLRGKD
>SEQF1086_CAE40639.1 cytochrome D ubiquinol oxidase subunit I [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAVRAGLPSGSVSMIDLDVVNLSRFQFAATALYHFLFVPLTLGLSFILAIMESVYVMTGRQIWKRMTMFWGTLFGINFA
LGVATGVAMEFQFGMNWSYYSHYVGDIFGAPLALEGLMAFFLEATFVGLFFFGWNRLSKVGHLVVTWLVAFGTNFSALWI
LIANGWMQNPVGAMFNPDTMRMEMTDFAAVLLNPVAQAKFVHTVSAGYVAGAMFVMSISAWYLLKGRHIDLAKRSMAVAA
SFGLASALSVVVLGDESGYLTTEHQKMKIAAIEAMWHTEPAPASFNLIAIPNQEERRNEFAISIPYVMGLIGTRSLTTPL
LGIDDLVRRAEVRIREGITAYEALQRVRANPKDVDARMLFERTWPDLGYALLVKRYQPDLSKATDEQIAQAALDTVPNVA
PLFWAFRVMVAVGFYLILFFGVAFWLASRGRLDSRPGLLKVALWSLPLPWVAIESGWFVAEYGRQPWVIEGVLPTYYAAS
GLTITDLAISLAIFLVLYTVLLVIGVKVMLHAVKAGPKGEASEPAGRRADPVQAAVDAY
>SEQF1086_CAE40640.1 cytochrome D ubiquinol oxidase subunit II [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDSLIPFDYATLRVLWWLLLGALLIGFAVMDGFDLGVAALLPLVAKTDVERRVVLNVVGPVWEGNQVWLITAGGAIFAAW
PLLYAASFSGFYLAMMLVLIALILRPVGFKYRSKMEGTRWRSRWDAVLCFCGVVAALVFGVAMGNIILGVPFGFDAATLR
PEYEGHFYQLFKPFALLAGLVSVAMMVMHGGVLLAWRTHDPVSSRARNWGRLAALATAALFVAGGFWVAYGLDGHVITSA
VDMHAPSNPMLKTVELQAGGWMANYEKWPLTWIAPALGVGGALLAFVLLSARANVLAFLASSVSIAGIILTVGFALFPFI
MPSSSRPGAGLTVWDGSSSLLTLWIMLLAVAFFLPIITVYTAWVYRVMRGKVTEDSVDGTPNSY
>SEQF1086_CAE40641.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MWYFSWILGLSLACAFGILNAMWFELREGHAHDPYKKPADE
>SEQF1086_CAE40642.1 probable ATP-binding component of ABC transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGASGIEHDPAAALNKPPREHSRWLAMRARAARVPLAVAGAAPLIGGVLLVIQAWLLARVLDQAIVQGAARAELATSIV
AISALMLARAALAWLGERAGAAAAERIKRQVREALFARLLALGPQWSRQRASGELASAMVEQVEALDAFFAKYLPAMGAA
AVLPVAFAVVVLPVDVITGLLLLVSAPLIPLFMALVGWGAEAASRRHLQAFARLSGFFADRLRGLATLKLYGRAEAEEQS
VVAASDALRQRTMAVLRIAFLSSAVLEFFAAQGVAGVAVYIGLTYLGFLDVRASVLTLQGGFFCLLLAPEVYGPLRQFAA
HYHDRAAARAAVAQIARTFDGLPSPGVEPAPPAQAPALARGAARLAASGLTVTQPGRPAPVLREAALQLDAGAHVALRGA
SGAGKTTLLELLARLRDGAGAIALDGVPLADWDEAALRERVVLIGQRPYLYAGSIADNIRLARPGASAALVEEAARRACV
MEFAQALPRGLDTPLGSRGHGLSGGQAQRVALARLFLRDPGLILLDEPAAHLDAATQARVLDEVLAFAQGRTLLLATHAD
AVARRLPRQWMLEQGRLRELQPA
>SEQF1086_CAE40643.1 probable ATP-binding component of ABC transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLWRLLFRLYARRKGALALALALSLLTVAAGVGLLGVSGWFLTGAALAGAGAVFNLFVPSSLVRGLSFIRIASRYGERL
AGHAATLRLLADLRASVFRSLVRLTPRQLARYRGGDLVARLTSDVDALDTVFLFVLAPVAVALAGGAILTAVMGAWIPAA
ALVVAAALLLCCAVAPWWLARAGRRPGAAVQESAAALRAATLDAVEGHADIAALHAGAQARAQFADACEQSARARAAQVR
IAARGQWLAQLAAGAAVLAVLWFGLDGLAAGELGGPLLAGLLLATIGIFEVAGPVMRGVSRLGAAVAAAARIGEIAAREP
DLRDPAAPRALPPAGELALEDVTFAYPVPDAAPHPVLDGASLRVAPGQRVAIVGASGAGKSTVLQLLLRLEDPQRGAVRY
AGCDVRECAQAELHRRVALLSQDAPLLLGTVRTNLLIGDAQADDAALWRALDAARLGEVVRGLPHGLDTWIGETGAGLSA
GQARRLCLARALLTGASAILLDEPTAGLDAATEAELLADLARATQGRTVVLATHARLPPGTVDTVYTLQAGRLHRAAPM
>SEQF1086_CAE40644.1 adenine phosphoribosyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQTDYAELVRRTIRSVPDWPTPGVTFRDITPVLQDPRTFRVLIDLFVYRYMRQRLDLVAGVDARGFIVGAVLAHELNLGF
VPVRKKSKLPYRTVAEEYSLEYGNAAVEMHTDSVRTGQRVLLVDDLIDTGGTMLAAIKLLQRLGANVVEAAAIIDLPYLG
GSAQITATGTPLYTVCQYQEGD
>SEQF1086_CAE40646.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRHALATALMVSVTLAGMSAAHADGKTREQVRAELAAAKAAGQVTFGELDYPAPAAAPAAGKTREQVRAELAAAKAAGE
VTFGELDYPPAK
>SEQF1086_CAE40648.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE40649.1 hypothetical protein BP0270 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGILTVTGDEIEQVTRKKRRQAQAKVLKALGIRLQIRPDGTLLVFRTSLGIPH
>SEQF1086_CAE40650.1 hypothetical protein BP0271 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRKSEVLRIWKADIDLPRRMIYLPEAKAGAREQPITAALAEFLDAF
>SEQF1086_CAE40651.1 integrase (remnant), partial [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGRAGLNIARVVSHTAVSHLVQVGVSLSTVQRMSGPRLAIVARYAHQNGDHIRAAMSNLEGRISGTITPKLHKRKSRLQR
KRP
>SEQF1086_CAE40652.1 stringent starvation protein B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGETSTKPYLIRALHEWCTDNGYTPYITVQVDEHTMVPVAHVRDGQITLNVGTLATNKLSLGNEFIEFQARFSGVTENVY
VPVGAVSAIYARETGAGMGFEVQAYEAPEHADAAPPPPESAEAGDAAASPAGDDGDGDEPKRPHLTIVK
>SEQF1086_CAE40653.1 stringent starvation protein A [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMVLYSGTTCPFSQRCRFVLFEKGMDFEIRDIDLYNKPEDISVMNPYGQVPILVERDLVLYESNIINEYIDERFPHPQLM
PADPVMRARTRLFLYNFEKELFVHVCALEDRSAKPDDKKMVQARQSIRDRLAQLAPMLLKNKYMLGDEFSMLDVAVAPLL
WRLDHYGIELPKNAAPLQKYAERIFSRPAYIEALTPSEKVMRR
>SEQF1086_CAE40654.1 cytochrome C1 precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIKKLIGAVALMLTCTATLAAEGGFPLEKAPDRINDVASLQNGAKLFVNYCLNCHSAQSMRYNKLQDIGLTDQQIQDSLL
FTGDKVGDLMKIAMTPQDAKKWFGTTPPDLSVIARAKSVNAGPSGADYLYTYLRTFYRDTSKATGWNNLAFPNVGMPHAL
WDRQGPRELTTVAVHQVEAADGTRNWERVTTVYDAQGYATAKTEPLADYRGHGSLETRFKAVNPAQSADYDQDVADLTAF
MSWMAEPVQLYRKQLGVWVLLFLGLFLVVAWRLNAAYWKHVR
>SEQF1086_CAE40655.1 cytochrome B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAGEKTVETTGLLGWLDQRFPVTSTWKAHLSEYYAPKNFNFWYFFGSLALLVLVIQIVTGIFLVMHYKPDAERAFQSVEY
IMREVPWGWLVRYMHSTGASMFFVVVYLHMLRGLFYGSYRKPRELVWIFGVAIFLCLMGEAFFGYLLPWGQMSYWGAQVI
VNLFSAIPFIGPELSIWIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVAAHLVALHEVGSNNPDGVEIKKGPKDKYGRPK
DGIPFHPFYTVHDIMGVAGFLIIFAAIVFFGPEMGGYFLEYNNFLPADPLKTPPHIAPVWYFTPFYSMLRATTDVFTWVL
AGAAILGAIALLLRAKGAMRIVAPVILVVVAVLLRTIDAKFWGVVAMGGAVVILFFLPWLDHSPVKSIRYRPTWHKWLYG
IFIVNFLVLGYLGTQPPSDAFNLTSQIGTLIYLGFFFLMPVWSRLGTFKPVPDRVTFHAH
>SEQF1086_CAE40656.1 ubiquinol-cytochrome C reductase iron-sulfur subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQDTLVHDDDGAVDPNLPPDPSRRFWVTTACAVGGVAGVATAVPFVSTFAPSEKARAAGAPVEVDVGDLAPGQMRTVEW
RGKPVWIIRRTDDQLKGIKSQDGLMADPNSERPGFTPAYAKNEYRSRKPELFVCVGICTHLGCSPTAHFETGGGAGMPGN
WQGGFLCPCHGSTFDMAGRVYKDKPAPDNLEVPPYQYLSDTRIIVGVDEDNKA
>SEQF1086_CAE40657.1 large-conductance mechanosensitive channel [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKATGFIKEFRDFAVKGNAIDLAVGVIIGAAFGKIVDSLVKDVVMPLVNFILGGSVDFSNKFLVLSMPDGYTGPMTYAD
LTKAGANVLAWGNFITIIINFVLLAFVIFWMVKAIYFARRKEEAAPEAPAAPPEDVTVLREIRDLLKDKQGS
>SEQF1086_CAE40658.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTIHIRELADWLDGALQAARFKDYCPNGLQVEGKAEIAHIITGVTASEALLRAAIERGADAVLVHHGWFWRNEDRRVLG
PRRTRLALALGHELNLLAYHLPLDAHPQWGNNAQLARVLGLQAETGPDGAPRTCGADNLVWLGSAPGVQTVAQLQQRVAE
RLGRTPLVVGEPDRPVRRVAWCTGGAQGMLADAVDAGADAYITGEASESTVHLARETGVAFVGAGHHATERYGVQALGEA
VARQFGIRVEFIDIDNPV
>SEQF1086_CAE40659.1 protease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTVSLAILFVVITLRPDWLRLSGPAPATRAPAAAASGQAGASYADAVARAAPAVVNVYTTKHVNVPLVPLPDDPVLRQLF
GQVPGLSRREASTSLGSGVIVSAEGYVLTNYHVVEAADAIEVALADGRQAAAKVVGADPETDLAVLKLAGKLGELPVATF
ADKRAPRVGDVVLAIGNPFGVGQTTTQGIVSALGRNGLGINTYENFIQTDAAINPGNSGGALIDAHGDLVGINTAIYSET
GGSLGIGFAIPVDSARRVMEDIVRTGAVRRGWFGIEPQDMTPELARAFQLPREARGVIIAGVMRDGPAGKAGMRVGDIVQ
ALNGAPVIDTRGLLGQIASLQPGQQAVASVLRAGKPADRLLPACMPLRCPPWPAIRPG
>SEQF1086_CAE40660.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI
>SEQF1086_CAE40661.1 putative regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYTPPAYEERDRHKLHAWMRDWSFATLVTHGDQGLQATHLPFLLDPLRGPHGTLISHLARRNPQAADIQAGAQAMVVFQG
PHAFISPSWYRNRQTFPTWNYAAIHAHGQAAAIEDAQRIRAILTRTVQTYDTPLGGEWTFEAMPEDLIVPRLSAIIALEI
PIARLEGKVKLNQDKSPEDRAGVLAALENRRDPGSRGVARMMREALLA
>SEQF1086_CAE40662.1 putative 2-hydroxyacid dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLIAIASQAPDLLRLPPALRALDPSIDVVVWPDPRCAAAEVAVCWAPPPGALAAMPALRLLHTVSAGVDNVLAAPGLPD
VPLCRVVDAELNLGMAQYILWGALYFSRGFDQARASQAAGQWRRPDRYGQPPLRVGLMGLGAIGMAALPLLRAAGLPVTG
WSRTAKRIDGVATHHGPDGLAPFLAASDILVNLLPLTESTRGLLCAATFAGLPPGAALIHCGRGAHLVEADLQAALADGR
LRGALVDVYAQEPLPPQHPLWRCPSLVITPHMASVAPFERVAGQILENLRRLNAGEALMNLVDPRRGY
>SEQF1086_CAE40663.1 probable extracellular solute-binding protein, family 5 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNYRHIRGTLRALLLASAAIATLAGAPAQAQTRGGTLRAIVHPEPPILITAINSQSPTQFVGGKIFQGLLTYDADLKPQP
SLARAWRISPDGLVYTFELQPDVKWHDGKPFSADDVVFSIDKLVREVHPRTKLILNAYVESVRAVDPATVEIRLKEPFAP
FISMFETGTMPMMPKHLYEGTDYRNNPANQHPVGTGPFKFKEWVRGSHIALVRNDEYWKPGLPYLDGIRFQVIPDSASRA
VAFEQANVDLVYGDDVDSVDIKRLRALPGVQYTTKGWEMFGPMGLMVLNQREAPFDNVLVRRAVMHALNRDFIVKNIFFG
MGRVPTGPFSSATLFHDKDLPVYDYNIKKARALIKESGVDVGQRTLRLLAFPYGANWERVGEYTRQTLEQLGFKVDIQAT
DAGGWASRMSQWDFDISFNHPYQYGDPVLGVQRLYLSSNRVKGTPFGNNQGYHNPKADALWQQAARSVDPAERQKLYSEL
QRILVDDAALGWLLEIDYPTLYRGNVHNLVTSAIGVKESFDTVYLDAR
>SEQF1086_CAE40664.1 putative acetyl esterase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTAALPYPLDPQIQRFVERMQADSAAHPRRDLVPVEQAHAISEAVRRPWAEGGPQMARTREIHVPTPHGPVRLRVYTPR
AARPGPALLYVHGGGWVLFSLDTHDRLMREYAERAGLTVIGVDYTRAPEARYPRAIEEIVGVIDWLDAHGAELEVDRARL
CIGGDSAGANLSVAACLTLRERGAAPLAGMVLNYGVYDANLFRDSTVKYGGGEYLLSTQQMVWFYWNYLRAGDDPRDPRI
SPVHADLRGLPPAFMAITELDLLHDTNQDMAARLREAGVDVQAKVYPGTVHSFLEAVSLAQVSVAAFDDTAAWLRAVLRP
DAAAAAIHTGEHQP
>SEQF1086_CAE40665.1 probable transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPAIAKDPSPRRAPAFPAPRQLSYLDLLTRQVQSAPGEMAALATDYPAGTVSSLHRHDRGQLLYAMSGVVTVITDLGSWV
VAPGQALWIAPGVLHQTRGFESVAIRSLYIDPAHADGLPAACQTIQVSPLLQALILEAVKLPPQDAGSERAGHIRALILD
EMRHVCAAPLYVPMPRDARLARICQALLRDPANAGSLDAWAAYGGLSRRNLTRLFRAQTGASFNAWRQKVLLMEALARLS
RGEQITAVALDLGYGSPGAFTAMFRRALGVSPREYFRWTEAPQRAD
>SEQF1086_CAE40666.1 2-isopropylmalate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLAHPATKYRPFAPFAADHAERAWPARRPAAAPIWMSTDLRDGNQALIEPMDGARKLRLFEQLVAVGLKEIEVAFPSASQ
TDFDFVRKLIDERRIPDDVTIEALTQSRPDLMARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQI
RALADANPGTQWIYEYSPETFSLAELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTANVYADQIEWMHRSLARRDC
IVLSVHPHNDRGTAVAAAELAVLAGAERIEGCLFGNGERTGNVDLVALALNLERQGIASGLDFRDMAALRACVSECNQLP
IDVFHPYAWLDQD
>SEQF1086_CAE40667.1 probable transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNPLEKDIAESKPQLAPHEHARAPVTALAVDYRDGEHVPRHRHRRAQLLYAIEGVMTVQAEAGIWVAPPTRGIWLPAGMA
HSIRMHGQPRVRTVFVAPRAAGHLPDRCCVLAVGPLLRELIVAATRVPPDWRPGGRDARLMALLLDEIRLEPALPLHLPQ
PDEPRVARVCRGILREPGAARGLAEWAAELGVTAKTVQRLFVRHTGMTFGRWRQQAGLLWAMRRLAEGVRVLDVALELGY
DSPSAFAAMFRRAVGEPPSAFAARREPPA
>SEQF1086_CAE40668.1 dihydroxy-acid dehydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPHYRSRTSTHGRNMAGARALWRATGMKDGDFGKPIIAVVNSFTQFVPGHVHLRDLGALVAREIEAAGGVAKEFNTIAVD
DGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCISNCDKITPGMLMAAMRLNIPVVFVSGGPMEAGKITSPVDGK
VIAKLDLVDAMIKAADPNVSDAEAEEVERSACPTCGSCSGMFTANSMNCLTEAIGLALPGNGTIVATHAWRKGLFEQAGR
LVVELCRRYYEQDDASVLPRSIATKSAFENAMTLDVAMGGSTNTVLHLLAAAQEAGVDFTMSDIDRISRRVPCLCKAAPA
TDKYHIEDVHRAGGILGILGELGRADLLDLSCGNVHSGTLGEAINQWDINGGAGEAAQKFFRAAPGGIPTTVAFSQDATF
LTLDMDRQTGCIRDKAHAYSQDGGLAVLYGNLAEKGCIVKTAGVDESQWVFTGRARVFESQEDAVEGILGDRVQAGDVVI
IRYEGPKGGPGMQEMLYPTSYLKSKGLGKTCALFTDGRFSGGSSGLVIGHASPEAAEGGTIGLVEEGDTIEIDIPNRRIH
LAVGDTVLAERRAAMQARGEQAWQPVDRERVVSQALRAYAALATSADRGAVRDLSQLKR
>SEQF1086_CAE40669.1 probable transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPIALWALAAGAFGIGTTEFVIMGLLPEVGADLGVSIPQAGLLVTGYALGVVVGAPPVAILTARLPRKTLLLGLMLIFTL
GNLACALAPGYGALMAARVLTSLAHGAFFGVGSVVATSLVRPDKQASAIALMFTGLTLANVLGVPFGTWLGQAWGWRATF
WAVTAVGIAAMAAIMYWVPASRGQHQADLAGELRALARPQVLLGFAMTVLGFGGVFTTFTYIAPILTGVSGIAAAAVSPI
LLLFGVGLVAGNTLGGRLADRRLMPTLVGSLAVLAAVLAAFAWTAHHSIAAVATVALLGAAAFATVPPLQMRVLQQAGGA
PNLASAFNIAAFNLGNAAGAWLGGLTIDHGPGLAATPLVAAAVTGGGLALALLSWSRDRRNDANQRAPALAARACESGQM
>SEQF1086_CAE40670.1 probable LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPLNSDALRLFLAVVDAGSMRAAAELLGHTASGVSRGLARLEAELGVTLLTRTTRRMELTEEGRQFQQKARAILLALDEA
QECMRIRHQQPAGRLRVDASAPVMLHCLVPHVEEFSRRYPEIQLELTSNDRIVDLIEHRSDVALRAGVLSDSSLHARAFK
PSTLLVVASPAYLARHGKPRDVAALRRHRLLGFTQPETLNRWPLRHDGGSTFVVEPDIGASSGETLRGLALAGAGIACLS
DFMLRADLASGSLVRLLESADNGYRQPLHAVYYRNTQLARRIACFLDFYAERM
>SEQF1086_CAE40672.1 putative 5'(3')-deoxyribonucleotidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLILLDQDGVLADFEHAFIDAWRKRHPDIEPVAFEERKSFHIREDYAPELRGLAEAIYTAPGFIRDLPPVPGAVEAFREL
LALGMDVRICSSPLMQFENCVAEKYLWVERHLGRDATQRLILTRDKTLVQGDLLIDDRPVITGAARPRWRHIIYDAPYNR
DQTDRPRLDWRNWRNVLAGELYRSDA
>SEQF1086_CAE40673.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE40674.1 hypothetical protein BP0296 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVIELIYDTLDPDVAKYLKNNKPAPGIHWHRQLSEDLGARQLVSRCFEVVGMAKTCHSIRELRDRVAEHYGHNTVQLTLT
LPRSQR
>SEQF1086_CAE40675.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE40676.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MISLSVPGGNFYLAMALSLFCLSTLLTWAVTLAANRGARRWLAAHRRLGPALMVLLAVAGAIFPYQHFSQWRQAQREARE
QTARRAVLEAARRVDGIDMPAGTELRLAEPGRLDSFQGADFPVPAHVAGLRVTRLVRHGAAPGGRQGWSVTLDGNQRIDG
WLCSRGHQVELAVRDGTPAFAGCHLAAGNEIGGAAVPPGAWVAARQPGPWLLRTEGSDPLDVGRLPLLKVDMTLDDRRQV
AGFEGLLARELTLGEMTYPTGTRVASAPAGLAQAQAGDLLFSPSRGRAARRGAGTEIVAGKSVLQAPDGTVRAVLANRDA
GVLDFAAVRMAP
>SEQF1086_CAE40677.1 MarR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIDTPDLETRAAPEDHHALRLWLRMLTCCNLIESEIRSRLRTEFDTTLPRFDLMAQLQRAPKGMKMGELSRHMMVTNGNI
TGITDQLEKEGLVVRTKVESDRRSSVLKLTPQGKRTFARMARAHESWVTGMLDDLPEASRHAMYKALGELKLQVVAHRAL
AQRDGAS
>SEQF1086_CAE40678.1 putative esterase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAIYRHYDRAALDVQYNARATVPDIQPILKRYAEASQQARDALPCTLDVPYGDHPDELLDIFPADGVRAAPVLVYIHGG
YWRALNKSDSCNMAPAFTRAGALVVAVNYSLAPAVTLDRIVDQNRRALAWIHRHIAEYGGDPARITICGSSAGGHLVGAL
LAGGWHGQYGAPEDIVHSAAPLSGLFDLRPLVHTHINEWMRMSPADAERNSPALHMPRRGCPIVVSYGETETDEFKRQSD
DFLRDWLALGYPGRYIPMPGTNHYDIVLTLNEPASALTQAIFALMGLAPPPTPSIR
>SEQF1086_CAE40679.1 putative ABC transporter substrate binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRLIPSLLAALALAPGLANADPIKVGIANDISGPFAALGAEARDGFNLAIKELGGKLGGQQAEFLQTDMGGNPDQARQLV
TRYIQREKVDFFTGPIGSNVALAVGPALFAAKIPYLSNNPGPSQYAGAQCNKFWFGNSYQNDAFHEAAGKVAADRGYKKV
FIMAPDYPAGKDALTGFKRGYKTAVAEELYTKLGQIDYAAELAQIRAAKPDAVYIFLPGGMGINFVKQFVSTGLAQGTAL
VGPGFSADEDVIQAVGEPMLGMVNTAQWAHDLDVPQNKKFVEAFRKEYNGRYPSVYAAQAYDVIMSIDAAVKQAGGKASD
RDAIVKALEQADYPSVRGSFTYGKNHYPIQAYYARVVEKDGSGRITNKLTGKVFDKYQDVYVGDCKL
>SEQF1086_CAE40680.1 probable branched-chain amino acid transport system, permease component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTFTLIVEQLLNGLQFGLMLFLIAAGLTLVFGIMDIMNLAHGSLYMAGAYVAAETMQRTGSFTAAVLVAALATGLVGAVL
ELTLIRKLAVRDHLAQVLGTYAVILIANDLVKMIWGPAPVMLNMPAALSGPVRLLPDLLYPAYRLMIIVFGLAAAAGLYW
FVTRTRAGVLVRAGASNRQMATLMGVRVPLLFLGVFVLGAMLAAVAGALLGPVTAVQIGMGEGILILVLVCIVIGGIGSI
RGAFVGALLVGMVDTAGRAFLPMLLRQVFPPAVASSVGPTLAAIAIYVLMAGVLVFRPAGLFPARG
>SEQF1086_CAE40681.1 probable branched-chain amino acid transport system, permease component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHRSTLWTLALLAALALFPLVAPALGLDFYISFVRRVLIYALAATSLNLILGYGGMVALGHAAFFGAGAYAVGILGAAGI
TSALLAWPAAIALAGALAWITGAISLRTRGVYFIMITLAFAQMVYYVFISLRQYGGEDGLNLSGYSTLPGLDLANDLTFY
YLVLVLFAVLMGVFGRVVDSRFGAALQGIRENESRMESLGYPVYRLKLTAFVISGAAAGLAGALLANHNLFISPSLMHWT
QSANLLIMVLVGGIGLRYGGVAGAVVMLVLEEVLRQWTEYWHLPLGVLLLCVVLGAPRGLVGLVGPWFAGRAGADSTRAG
T
>SEQF1086_CAE40682.1 putative branched-chain amino acid transporter, ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAPAASPALRADGLVRRFGALVATDRVSLTLAPGEIHALIGPNGAGKSTLIHLLSGTLPADAGSLKMGERDITALNAHQ
RVAAGLSRSYQITNIFKSFSVLDNLLLAVQARAGSSFRFWRRRAAERELYDAAHELARQCAIDAGMLQRPAGTLPHGEQR
KVEFALALAARPSVLLLDEPMAGMGPDETLRLTELIETLRGRAAMLLVEHDMQAVFRLADRISVLVYGRVIATGTPEQIR
ANPEVRQAYLGDEEQTAALEGARC
>SEQF1086_CAE40683.1 high-affinity branched-chain amino acid transporter, ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLNVNAVESGYGASQVLFGVDLEIGAGQVVTLLGRNGMGKTTLLRTLFGQLPLRAGSVRFAGQEIGGWSPDRIARAGLAI
VPEGHQCFPNLTVREHLTAFVAARNPSIGQPWTPQRVFELFPRLGERAGNMGNQLSGGEQQMLAIGRALVTNPRLLILDE
ATEGLAPKIREEIWTCLARLREAGQTILVIDKYVERLLGLADRHVILERGKVVWKGDSAALDADRGLWERYLGV
>SEQF1086_CAE40686.1 putative enoyl-CoA hydratase/isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQSEQVHTMKHHKRPYAGHAARTFQWQVSDDGKIATITLNRPERKNPLTFDSYAELRDLFRGLVYATDIKVVVLTGAGG
NFCSGGDVHEIIGPLTRMSMPELLDFTRMTGDLVKAMRACPQPIVAAVDGVCAGAGAMMALASDMRLGTPAARTAFLFTR
VGLAGADMGACTLLPRMIGQGRASELLYTGRAMNADEGLQWGFFNALHDPAELSGAALALAEQLAAGPTFAHGVTKKLLH
QEWNMGVDEAIEAEAQAQAQAICMQTQDFRRAYDAFVARRKPVFEGD
>SEQF1086_CAE40687.1 putative acyl-CoA dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPDLSWQDWPFFDPLHRELARELEAWCGPALAAIDHRDTDAACCALVRSLGQAGWLRYAVPAGPGGGWGGRLPKIDSRAV
CILRETLARHDGLADFAFAMQGLGSGAISLMGSDALRQQYLPPVARGEAIAAFALSEPEAGSDVAALACEARADGDGYVL
NGEKTWISNGGIADFYCVFARTGEAPGARGISAFVVDAGTPGLEIAERIDLIAPHPLARLRFADCRIPASRRLGEAGQGF
KLAMMTLDIFRASVVAAALGFARRALDEGLARARGRRMFGQTLADLQLTQAALGDMATAVDASALLTYRAAWMRDVQEVR
TTREAAMAKMTATESAQAVIDRALQMFGGAGVVAGTTVERLYREIRALHIYEGATEVQKLIIARELLKS
>SEQF1086_CAE40688.1 probable acid-coenzyme A ligase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEPSAHLDSFARDNLPPASEWPEFLLDGPDVAYPKRFNCAAELVDAMVRQGHGERVALRWRQDERIETMTYGQLQALTNR
IARVLVEDMGLVPGNRLLLRGPNNPMMAAAWLGAIKAGLVTVPTMPLLRAKELRQIIEKAQVQAVLCDARLKDEALHCAA
PAHEHYCPGLGQVMLFNDGAPDALDARAAAKPEDFPACDTAADDVCLIAFTSGTTGAPKGCMHFHRDVLAMCDLFPRHVI
RPGPDDIFCGTPPLAFTFGLGGLLCFPLRVGASAVLAEKLSPDTLLALIHDFRATISFTAPTFYRQMAALAPKYDISSLR
KSVSAGEALPDATRQLWRQATGIEMIDGIGGTEMIHVFVSSPPEEVRQGAIGKAVPGYVAEVVDEQMRPVPNGTVGRLAI
KGPTGCRYLADERQQRFVQQGWNLPGDTFLRDDDGYFFYQARNDDMIISAGYNIAGPEVEDALLRHEAVAECGVVGAPDD
DRGQLVKAYVVLKPGYEPDDALAAALQAFVKAGIAPYKYPRAIEFVDALPRTETGKLQRFALRRMAAEG
>SEQF1086_CAE40689.1 probable 4-hydroxybenzoyl CoA thioesterase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAEPFVSEVEVRFRHCDPAGIVFYPRYFEMINDFVEEWFDKGMGLPFHALHVDRHIGTPLASVQCDFSAPSRWHERLRQE
LSVRRIGGASFRADVRFLGPDDRLRLSADLTIVTVDLRSMRSTPLPDDLRARMQAFLSPQARDA
>SEQF1086_CAE40690.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKILQPPDWLAPRGYSNGTLTEMAVGSKLVFVGGQVGWNGQQQFETDDFAEQVRQTLVNVLAIMAEGGAGPQHIVRMTWY
VKNKAEYVASYPEIGKHYRELIGRHFPAMTAVEVADLIEDRAKVEIEVTAVIP
>SEQF1086_CAE40691.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTIANALQLELDEATCVLSAAYAPTGENDTLPTWDTLVAAVQARGWPATVLDQISAIVFIEQCRDTAGPVEACIGEVRNG
TFELEVAEDRMSAQLTLRAPKGGQPVGESDLLAGLQAHGIVHGLIPEALRQALERGACEALEIARGTLPEAGEPARFESL
LDALKTRLSEDDENAIIDYRNLGDLTLVSAGTPLMRRIPATPGQPGTNVLGGPVAPPAVADPPFAPKLNGVEVDPEDPGL
LRAAIAGSPMLVQHGATVNSLVEVPAVDLSSGNIDFEGTLRVKGDITAGMHVRVSGDVVVNGTIEAAHVEAGGNVTVNGG
IIGSAEGVADSRGGSRMARIVSGGSVKARFIDNAQVRAEKNVAAEREIRQSTVTAGETITVGPPGSQQGVITGGTAHAYK
SVHAGTLGSMAGIPTVVRAGLNPHANAKRAALETRARELEEEKAKLEKLILFLHNNPAKNVNNMSERARQTHAKISADLV
ELQAEDARLAKELQPLETAMIVASRRFFGGVTLHLGVKVTEFLEDQVGGKAVLEQGELAIR
>SEQF1086_CAE40692.1 glutamate-1-semialdehyde 2,1-aminomutase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTNAELFDRACRSIPGGVNSPVRAFRSVGGTPRFIQRAQGPYVWDAEGKQYIDYVGSWGPAILGHAHPEVVRAVQEAAV
HGLSFGAPTEAEVELAEMLIARLPSLEQVRLVSSGTEATMTAIRLARGATGRHKIIKFEGCYHGHSDSLLVKAGSGLLTF
GNPSSAGVPPEFVAHTLTLEFNNLAVVDAAFSQHGAEIACVIVEPVAGNMNLIKPAEGFLAGLRELCTRHGAVLIFDEVM
TGFRIGPQGVQGLTGVRPDLTTLAKVIGGGMPVGAFGGRADLMTHIAPLGGVYQAGTLSGNPVAVAAGLATMRLIGEPGF
YERLSAQTARLAQGLQERARAAGVPFSADAIGGMFGLYFGDRVPASFAEVSACDTEAFKRFFHAMLERGIHFAPSAFEAG
FVSATHDDAVIDATLEAAEQVFATLRA
>SEQF1086_CAE40693.1 thiamine-phosphate pyrophosphorylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTLRFPAGLYGITPEWDDTDRLLAAVRAAAAGGMTALQLRRKLADERLRAAQARALAPLCRELGVVFLVNDHWKLALDV
GADGAHLGRDDADPATVRAQAGAGLLLGVSCYNDLRRADALLAAGADYVAFGTVFASPTKPEAVHAPLQTLTEARARVLA
CPAPRPAVVAIGGITPANVSQVAQAGADSAAVISGLFEAPDIQAAARACAAAFSVNP
>SEQF1086_CAE40694.1 phosphomethylpyrimidine kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRPDYPFFAVVPVLDSVTPPLVLIIGPVDPSGADGLPADAVSCARLGCHALAAVTALTVQDTAGIEEVHPVAPELLDDQA
RCLLEDMSVQAIKVGALLSAEAASVAAQIAADYSHVPLVLHLGQRTPLPQDAADQDDADDLLAATLELVLPQTDLVVVEH
VRLAQWQADGSIDTSGAPSPAHALLAGGAQWALVLGSPARPGHQVNMLVGPEGQTSTWPWQAPPDRNGDTGGVAAIAAAA
MLAQGMEMPRAVEQALAHAERTIAASFLPGMGRRLPNRVAQS
>SEQF1086_CAE40695.1 rubredoxin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRTWMCLICGWVYDEEAGLPDEGIAPGTRWEDVPPNWVCPECGARKEDFELMEI
>SEQF1086_CAE40696.1 putative transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDSHRPDADDIPDDDELSTDFSNQFLLAMPGVVEGSLAGTVIYICEHTRRGALGLVINRPTDLTLATLFERIDLKLEIG
PVKDEMVFFGGPVQTDRGFVLHAPAGDYTSSINLGELALTTSRDVLQAVADGNGPARMLVTLGYAGWGAGQLESEMAQNS
WLSVGADSHIIFDVAPEDRYPAALKLLGVDPVMLAGGAGHA
>SEQF1086_CAE40697.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSETRAARFGRIGQLLQEWQPQRAVVGLPLTLDGQEQPASARARRF
ANQLHGHFGLAVELVDERSSSMEAQQLLGTHADDDAVAAAVILQRYLDTLSQP
>SEQF1086_CAE40698.1 aspartate carbamoyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLNPQLNRHGELIHLLSTEGLPRRIIEQILDLAATFVPAPGQEFPKLPLLHGKSVFNLFFENSTRTRTTFEIAAKRLSAD
VVNLNIAASSTSKGESLLDTIANLSAMQADLFVVRHGASGAPYLIAQHVAPHVHVINAGDGRHAHPTQALLDMYTIRHHK
GDFNQLTVAIVGDVLHSRVARSDIHALTTLGVPEVRVVAPATLLPEGLAQMGVRVCTDMEEGLRDADVVIMLRLQNERMR
GALLPSAHEYFKHYGLTQARLALARPDAIVMHPGPMNRGVEIASEVADSGQAVILDQVTFGIAVRMAAMSLVAGVRP
>SEQF1086_CAE40699.1 dihydroorotase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTVRTVRIAGGRLIDPASGADARADLYLADGRIAAIGQAPAGFQAQQHIDARGLAVLPGLVDLSARVHGAGLAPLACEMQ
AALAGGVTRLVVPPDTDPPLDEPGRVEMLRHRAHQAGQAQLHPLGALTEGLRGERLSEMAALAEAGCVAFSQAGLPVADT
RVLWRAMQYARTFGLALWLRPLDPWMGRDGVAAAGAYASRLGLAEVPVQAETLALHTIFELQRATGARVHLMRLSSAAGV
ALVRAARREGLPLTCDVAAHQIHLTDVDIGFFDSRFRLDPPLRGQRDRDAIVAGLADDTIDAICSDHRPVGDTGKLLPFA
EAEAGASGLELLLSLTLKWAQRERVPLARALALVTSAPAAILRAATAAPPPCGELAAGAPADLCLVDLDAD
>SEQF1086_CAE40700.1 acyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLLRFVFRVFLVVPWVLFGLLCVTLVYRGLRQDQRARLNRCWSACLMRLCGIAVHVRGAPRLRGGVLWVANHVSWIDIF
VVNSVRATSFVAKSEIRAWPVIGYLAAGAGTLFIDRTQRHAVHAMGQSIHDCFARGDAVGLFPEGTTTEGFTTRPFHASL
FEPARAEGVDIQPVALRFMHRGQRSGFAAFVGEETLVANLWRVLGTTGLAVEVVFLEPLPTQHAEGHQPTRLELSHMVRN
AIAGEL
>SEQF1086_CAE40701.1 diadenosine-tetraphosphatase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKGNIWTIGDVQGCCAPLAELLAHPEIAGDTDSRFWFAGDLVNRGPQSLAVLRRIMAMGERCTAVLGNHDLHLLAAYAGV
RKPSKSDTLDEVLQAPDAVDLIDWLRFRPLAHYEAGHLMVHAGVLAKWDVAKTLALAGEVEQALRGPNWRKALQKMYGNE
PATWKDDHTGGKRMRVIINALTRIRLCTPSGHMEFATKVAPGAWPAGLVPWFDVPNRATRDVTVVFGHWSTLGLLMRPDV
ICLDTGCVWGGALSALRLHDRKLVQVKCKRFQDPNGD
>SEQF1086_CAE40702.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRTARRYLAREIYRSCAVVLLALLGLFTFFALVDDLDNVGDKFSMLALFYMQALALPTRLYDLLPIGLLIGAILALAGLA
QRNELVILRVSGVSGMRLLGMLWVITIPLMIGATLLSEFVTPAAEIKSGEADLTFRGKTGGGRLNSGYWFKEPTPQNGTR
IINIKTLLADGQVKDVTLYEFRSDLEMTALWTAPNGRFSRGDLVLTDVSETRIDEHAPSALADAKQPKEPPARVTKVPEL
KLDTTLSPERLLARVLTPERMSALTLVDYIEYLRHNQLQYDRQVVALWRKLVYPFTLLVMITIAAPIGFMQTRRGGVGAK
VFIGILLGVGFFMLNQLALNVGMLSRWPPWITALGPNLGALLLAFGALSMMEYRHAIARFMQHRWPWRKVPA
>SEQF1086_CAE40703.1 monofunctional biosynthetic peptidoglycan transglycosylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAVLCIAILYQLWMFSLVVWYAYRDPGSSAIMRQELARLRERDPEAELKYQWVPYDRISNTLKQAVVASEDANFTEHDGV
EWDAIRKAWEYNQRQAERGRTKMRGGSTITQQLAKNLFLSGSRSYLRKGQELVLAYMIEHVMPKERILELYLNVAEWGVG
VFGAEAAARHYYNTSAARLGAGQAARLAAMLPNPRYYDRHRNTGYLNSRTATLTRRMRMVEIP
>SEQF1086_CAE40704.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE40705.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAMPRHKLVVLTNPVEGREQEFDDWYMNTHMPDVMRVPGFVSGQRFTWAHAQAKPHAQTWRYLTILEIDTDDLQATLDD
LMARPGTAAMRMSDALAEQRLAYVFTAATPVFAPDGAGGITLRD
>SEQF1086_CAE40706.1 putative coenzyme A ligase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKQTQPTPPAAAIDVHAAFGEMRHWTTGHIVARRAALSGSQTFLRNMADGRCHTYLDLHRQTNGIAQALAALGIGHGDHV
AVMLENCPEQVFSYVALGKLGAVSVPINTAAKGQLLRYYLDHADCTAIVVSDTLAAPLADIIAALPRLQRVIVLGQARAA
AAGLPDGVAVHPFPDVDGSDAAPRVPVRFDDLAYLLYTSGTTGPSKAIMITHACAHFWGEQNIRYRHFLPGEVDYVFLPL
FHANALLLGVTSALMAGTTVALARRFSTSRFWSDVRTAGATRFNAIGAVGNFLYSQPPDPRDRDHKVRLCSLAPPPPFVH
DFERRFGIKVLNGYALSDYCAATWSPLDAPPQKVFSAGLARDSVRVRIVDDDDFDLPADSPGEILLRVEQPWGTPLGYYK
MPEATLAAHRNGWFHTGDRGRLDADGYLHFTDRKKDAIRRRGENISAYEVEAIILGHPAVRQAAVYPVRSEFTEDEVAAS
IVLHDGQALTPEALVLHCRDNMSSFMVPRFVEFVAELPLTLTNKVEKYKLRARAEADPAALWDSQQHAGGTARAAATGG
>SEQF1086_CAE40707.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPMPVHRAGAAGPDAVRRSLLAAIPGLMLGAVARAQPAAYPAHRVTLLVPYTAGTAADAVARFIAAKLTALWGTTVLVE
NKAGADGVVGTRAVLQAPADGHMVLFTGPPFLYNTEMLQTAPYVPLRDFQPVARVSSAMWLFAAGRQAPFANLAELIALD
KRQGRAADIAVSGSAAMAVATALKNATGARLNIVPYTSTSQAITDAAAGHVDAVAAAIAGVAPLVRSGMLNALGVSGPTR
SLAVPEIPTLAEAGAPGFGFVSWNAAFVRSGTPEAAIARLAEGMGAVAASAEFREFAREQGVEPAFMGPDAWPAEAADQQ
ARWSGLLREAGLIKPKQG
>SEQF1086_CAE40708.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNIENPAPILDQDPYVQAYPETRAFWEAAAQGRFVLPRCRDCGQSHWYPRGLCPLCGSTALEWQDAAGTGTLYSYSVMRA
APQPYAIAYVQLAEGPLVLTNIVDSDLERLRIGQPVRVAFQRTQEGRSAPVFVALAD
>SEQF1086_CAE40709.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGGEQRETNLSIRGKAYIVGAFEHPLRYAPAHSVAQLHAECALGALADAGLTLADVDGYFCAGDAGASPATLVDHMNLRL
RHVDGTEIGGGSYLALIGHAAQAIASGKCRVALITLAGKPRSAGQATGTEARQPGPDRPASAWEAPYRWTVAGIYGNFAR
RHMHEYGTTSEQLAWVKVAASHHAQHNEHALLRKVYSVEDVLASPMIADPLHRLDCCVITDGGGALVLAAPEVARSLARP
RIRVLGCGETIRTNNGGHHADMLHTGAQRSGPAAFAEAGVTPADIKYASVYDNFTIMVIMQLEDLGFCEKGAGGRFVADG
NLISGTGRLPWNTDGGGLCNNHPANRGGITKAIEAVRQLRGEAHPSVQVPNCDLALAAGPGLVFGVGHSHATVILERE
>SEQF1086_CAE40710.1 metallo-beta-lactamase family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNLWLLGTGTPTPSLWRMCSGYLVRVGDEYLVFDHGFGAHHRMLELGVRATQVSHAFFSHHHYDHMGDYPRLLLTRWDQG
VGRIDDMDVYGPPPLKLITERLIGDDGAFGPDLISRTENQCSIDVYQARGGTGMRARPQPHLHELAADAVVRTPGWTVRV
APVNHFAPHLVSYGYRLDADGQSFVYSGDTGPSRALRELAQDCDVLVHMCHYVSGTAPSKTFAAFTMGHRELAELAAEAN
VRNLVISHVTEQFDHPGMRERIVREVGEIYRGNIFFGEDGMEIPFAGPRQTRLD
>SEQF1086_CAE40711.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQHLHRPTRLMGAIAIITTAFALAGVPAQAGAAPSDQPLRIVVPYAPGGTGDVIARLVAKKLGEQSGQSVVVENKPGAAG
SIGASTVARAAADGNTLLLGYTSEMVINPIVQKGVSYDVARDFAPVALAGSTPLLLVANPTVGVNSIAELVALAKAKPNR
LSYASAGPGSPAHIAGALLAREAGIQLLHVPYKGGSQAVTDTVGGVVSIYFSGMPPAVPFVKNGKLTALGVTARQPSPAL
PDVPALAAQDYPRLDLAGWFGFFAPREVPAPVQAALHDRITAALAADDIRQALAVQGVETRPMSAQAFGDFVAAEQKKYA
RFIDELGIAAE
>SEQF1086_CAE40714.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSMHNKHSMVRRALGALALAWATAGAAMAQAPYPTAQAAGDALVDAIATSDDVAMARVLGANYRQVFPAGDHTQAIYRFL
AAWADRHDIQSEGDRRAWLAVGLSGWTFPVPMARGGQGQWRFDLQAGVAEMRRRTIGRNELVAIDGVRQLVQAQARYAQG
PGQGRYASRLVSRPEHRDGLYWPAADQADAPPFGPDALAMGADTPLDQAYAGYRFRVEAAPDGKDFRVVAWPAQYRRSGV
YTFAADASGQVLQRDLGGAGAVGMRTDLAGWQPVAQ
>SEQF1086_CAE40715.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYRTDRLYSPPAWPVTRWLADPGRNVPDDIRQALLGGLFGTISIFVGGVLNSVLVALIIAIRLPQAPFIAWLAFELACCL
ARAVVLVSARRAAAAGRPTHTDAYIVLTVLWSCSVGYGTLISVASGDWVAAILACLSAAAMVGGICFRNFSAPRLTALMI
CVSLGPCTTLPWFTGEHSLWIVSVQLPLYLASMTVAAYRFNRMLVATMQAERDSDRLARCDALTGLMNRFGLGFALERAV
AATRRDGNEFALLYLDLDGFKSVNDTHGHAAGDRLLRDVAARLTELAPADAAIARIGGDEFVLLVRDCDEACATALGDRI
VARICELYDLGTPRPVRIGGSVGIALVPRHGQEMTAILKAADRALYLAKSAGKSRTALAA
>SEQF1086_CAE40716.1 methylated-DNA--protein-cysteine methyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRGTRAPHTVKAPSNQERIMQFFQAQLESPLGALSLVTDDRQQVRALEFADSPQRLQRLLHLHYGTYTLREAPAPAAIVT
ALAHYFSGQCDALDGIATATGGSALQQRVWQALRRIPAGEVTSYGALARQLGHDDRQAARAIGGANAANPIALIVPCHRV
IGKDGALKGYAWGLERKRWLLAHENAAAGLLREAG
>SEQF1086_CAE40717.1 alkylated DNA repair protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQADLFDAEQTGIRTRLGEQAWVLRGFALPWLDALLPALRAVIAQAPLRHMATPGGFTMSVALTNCGALGWTTDAHGYRY
RPDDPQTGLPWPPMPQAFAQLAREAAAQAGFAGFDPDACLVNRYAPGARMSLHQDKNERDFGAPIVSVSLGLPAMFLFGG
ARRDERPARIPLLHGDVAVWGGVDRLRYHGVMPLAEGQHPLLGRQRINFTLRRAGA
>SEQF1086_CAE40718.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDTCPNTVQARIGALDWPALETALDARGAAVAHGLLDARECGELAALYAQPRLFRSRIVMARHGFGRGEYQYFAYPLPPL
VAQLRTAFYPPLAAVANRWNAALRDPMRYPARHADWLHTCHQADQARPTPLLLKYGPGDYNCLHQDLYGERVFPLQVAIL
LSRPGRDFDGGEFVMTEQRSGHAARAEVMPLAQGDALVFAVNRRPAQGARGPVQASLRHGVSELRAGQRYTIGIIFHDAT
>SEQF1086_CAE40719.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEWVLVSACLLGRPVRYDGRDAATGHPVLARWQAERRVVAVCPEVAGGLPTPRPPAEIAAGAGGAAVLDGLAQVREASGV
DVSAAFVEGARQALALVRERGIRVAVLKEGSPSCGSGYTYDGSFSGARIAREGVTAASLRRAGVRVFSEHELDAAQAWLR
HLETGA
>SEQF1086_CAE40720.1 putative ATP-binding component of hemin transport system [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLQARNLTLARGGAPILTDVSLTLAPGALVGLLGANGAGKSTLLAALAGELAPRSGQVFLGDADLATLSARQLARRRAV
LPQKPSLSFDLGVSDVVGMGAYPFPELDPAAVRQLVRDALEQAGVTHLAQRRYPQLSGGEQQRVQFARVLAQCHAMHAPG
QTRYLMLDEPISNLDPRHQMELLATARALAHEAGMGVLVIVHDINQAARWCDTLALLADGRLAALGPPADVLTPDHMRRV
YGIEADVLAHPTLPGRLLVLAR
>SEQF1086_CAE40721.1 putative hemin permease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGILAAASGAVHIPLADLARLIGGDSTPRDALWRNVLFDIRLPRVLFAATAGAALAICGAAMQALFRNPLAEPGLVGISA
GGAMGAVLAIVLTSGGFAITAPAAFAGSLLATGCAYVLGRRAHGVAGLLLAGIAINTVAGSVIGLLTFMASDAQLRDLTF
WSMGSLAGARWSLLAFLAPWTLLWSWWLMRQWRAMNALLLGEREAHHLGFALRSVRRQLVLATALIVGPLVAATGGIGFV
GLVVPHLIRMTLGADHRWLLPASMLAGALALTLADWLARVVIVPAELPIGLVTSLVGGPFFLWLLARGRRL
>SEQF1086_CAE40989.1 peptide chain release factor 1 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPSMRSRLEQLAHRLIEVDALLAEPETAADMDRFRKLSRERAELEPVVEAFNAFLGVEADVATAQEMLSDPDMKAMAED
EIKTGRARIEEMEAALQLLLLPRDPDDGRSLFLEIRAGTGGDESALFSGDLLRMYTRYAETRGWRVEIMSESESELGGYK
EVIARIDGDGAYGRLKFESGAHRVQRVPATEAQGRIHTSACTVAVMPEADAMSDIVINPSDLRIDTFRASGAGGQHINKT
DSAVRITHVPTGLVVECQDDRSQHRNKDKAMQVLAARLKDKEMRERQSKEAAERKSLIGSGDRSERIRTYNYPQGRVTDH
RINLTLYKLQQIMEGDLDELTGALLAEHQAEQLAALGHDL
>SEQF1086_CAE40990.1 heme biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLLKDLLADPGLPRLEARMLAEHVLGRSRAWLLAHDTDPVEPAHEAAWRQLAARRLAGEPMAYLLGGREFMGHWYALTP
DVLIPRPDTELLVETALHWLQGRAAPRVLDLGTGSGAIAVSVALGCPQAEVTATDLSAAALAVAEGNAQRLGARVRCLAG
DWYEALPAQDRYDLIVSNPPYIAREDAHLAQGDLRFEPRGALTDENDGLAALARIAGGAPGRLLPGGAIWMEHGWDQAEA
ARALLRQAGLREVHSRRDLAGIERISGGYL
>SEQF1086_CAE40991.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDVQEFIRETVTQHPVVLFMKGTTQFPQCGFSGRAIQILKGCGVKKLVTVNVLEDDEVRQAIKTFSNWPTIPQLYVGGE
FIGGSDIMSEMNESGELKQLLDDSGATA
>SEQF1086_CAE40992.1 probable flavoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRLVVGITGATGAIYAVRLLQALRGVSDVESHLIVSASGVLNIKHELDVGRHDVQALADHVHSVRDVGATLASGAFQTA
GMVIVPCSMRTLAAVAHGLSDNLITRAADVTLKERRRLVMMVRETPFNLAHLRNMTAVTEMGGIIFPPLPAFYHRPASIE
EMVDHTVARVLELFDIEVPGPHWAGM
>SEQF1086_CAE40993.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQRRSFLAKVAHIAAAVGVSACAATSSFAATGDFPNKPLDIIVTFPPGGGTDMLARLIGNYLTESLGQTAVVENRPGASG
NVGARLVADRAPDGYSLLMVNSSFAVNPGVFRNLPFDPKKDFAAVINVAYVPSVFVVPAGSKYKTLGELMAAAKQTNTQV
TYGSCGNGTPQHLAGELLNVSAKTHMVHVPYKGCGPALNDVLGSQIGLAVVTASSAIPFIKAGKLQALAVTSKERSALLP
EVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLADLGYSTASDGPEVFQKMVETDIDRFSA
LTKQIGLKVD
>SEQF1086_CAE40994.1 4,5-dihydroxyphthalate decarboxylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSKLKISLSCGDYDRTRALFDGRAPIEGCEVTAVPLEPEEAFHRAFRYHEYDVTEISMSSHMMTTARGDNEYIAIPAFL
SRVFRHSGIYVRTDRDIDKPQDLRGKTIGVPEYQITANVWIRGILEDAYGVKPQDIKWRRGGIEEPGRGERAPIELPDGI
DLQQIPDDKTLSDMLEAGEIDGYIGARAPSCFLRGAPNVGRLFNDYLKTEQDYFRETRIFPIMHMVGIRRSLVEQNPWLP
VSVYKAFLKAKMLAVKELNEICHLAVTLPWMVHHYNAARELMGDDYWPYGLDANRHVIETFARYHYGQGLSRRLVKPEEL
FAASSLDLSKI
>SEQF1086_CAE40996.1 probable 2Fe-2S ferredoxin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDITESTAQHVSLTVNGRACGGCAEPRMHLADFLRGELGLTGTHIGCEHGVCGACTVLVDGYSTRSCLMLAVQAQDSRI
DTIEGLAGEDDALHPIQQAFHELHALQCGYCTPGILMSVAELLAANPNPDEAQVRDVLSGHLCRCTGYQNIVAAVLRAAQ
LMRAEAGHD
>SEQF1086_CAE40997.1 probable dehydrogenase/oxidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDATSPGLGRSAPRIEDDALLRGQARFLDDIEVEGVLHACFVRSPHAHARLVSIDLSAARAVPGVAAVYGARDLFGQLT
SWRMPLGFPLAALPDDTTPFVLAEREVAFVGEAIAVVVADSRHIAEDAAARVAIEYEVLGAVVDCRDALRPDAPLVRGEL
ASNILQQYTLAYGDCETAFAQAHRVLEDDFWVHRGCAHPMEGRGVLARMDRATDTLTVWSSTQMAHELHYTLALMLGQPE
DRLRVVTPDVGGGFGAKFMIYPEEMAIPAAARKLGRPVKWVEDRREHFTTSIQERDQYWKVAMAIDDQGHVLGIRGNFVH
DNGAYTPQGTNVPYNAASSMTGPYVVPAFSLDVSVAYTNKVPVATVRGAGYPQAAFVMERMMDRVAAELGIDPGECRRRN
LIGPAKIPYTKPLKSRAGMPLTIDSGDFPALQACALQASDYDGFAVRRDAALARGRWRGIAVANSVEPTGRGPFEVARVR
VQPSGQVSIYTGALAMGQGIKTTLAQICAGHLGVPVAAVEVQAGDTAYVGYGMGGFASRQAIMAGSAVDQAAAQVRRQAL
ETAAAVLKAEAETLELADGEVRAPDGQSVSLARLAMLRKGVPGYALVSPGDPGLDATAYFHCDAQTYAGASHVCEVEVDP
ATGAIEIVRYVAAQDSGRIINPQLAEGQVHGGVVHGIGNALFEWMGYDAAGQPLSTTFAEYLLPTAPEVPPIEVVFQPSP
TPLNPLGVKGVGECATIPVAVAVVGAVEHAVAHCGVRVTEFPLTPVRLLELLTQAEARAAAPTDSGEFVDGVH
>SEQF1086_CAE40999.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41000.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIRSRPLALLSTLLLALAIAGCSTPGKKRGGYYKDDGPDANPPSNLDNVPDATPRLEPLASGPNRPYVVFGKRYVPDTSE
RPFRQQGLASWYGKKFHGNSTSNGESYDMYAMTAAHPTMPIPSYARVTSKINGRTVIVRVNDRGPFHSDRIMDLSYVAAH
KLGIIGPGSGPVTVERILPAEILAMNGGAAAPRPGPASATGPLPVAAPSAAAAVELHPATQLASNAPTPPRPAAGAGSGV
YLQLGAFSQPANAESLVSRINGQLDPASGIPPAVVEQANNLYRVRIGPYATREAALGAVQPVADRTGILPSLSATP
>SEQF1086_CAE41001.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLRVVLITGISGSGKSVALRLLEDAGFTCIDNLPVRFLAEFIANARDDAMERVAVAIDVRSPGELAELPDVITASRAMGT
SLSVIFLDANTDTLVQRYSESRRRHPLTDRLARGGKTPSLAECIALERELMAPLRDQEHVIDTSDLTPGQLRAWIRDLIQ
ADRPPLVLTFESFAYKRGVPSDADLMFDVRCLPNPYYDRTLRPLTGRDEPVATWLGGFDIVTQMIDDIAAFIRRWLPQYT
QDTRNYLTVAIGCTGGQHRSVYVVEQLARRFSDHDPLLVRHRTQLPDDPA
>SEQF1086_CAE41003.1 cytochrome C [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKIIKRVLVVAILALLAAVATLYWLGTRDHVPAGPQAAPATGSADELVEQGRYLARAGNCMACHTARGGQAYAGGTPIPT
PFGTLYGPNITPDAETGIGGWSADDFWQVLHNGKGPGGRLLYPAFPYTEYTRMTRADADALYAFLRTVEPVRQASRPHEL
ASPYDQRLLLAAWRALYFEPGGPQADPGQSLQWNRGRYLTEGLGHCAACHTPRNSLGATRAAEALGGGMIDGLGWYAPPL
TGQPGTGLGDWSAQDIAALLTTGIAPHSTVAGPMAEVVLGSTQYLSGDDALAIGTYLKSLPAAASPPARRGAPSATVMEL
GGKLYGQHCAQCHQADGKGSFPAWPALAGNPSVIAAEPANVIRMVLDGGFAPATAANPRPHGMPPFAQALPDNDIAMLVS
YVRNSWGNQAGAVTPLDVKRTRESGAGR
>SEQF1086_CAE41004.1 Hpr serine kinase/phosphatase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLTVQELVDDNADKIPFSWIAGHDAADRAISDDGMAAADLVGHLNLIHPSRIQVFGQEELAYYTRFDLRRRMHHMDELLI
GGVPAILLADGLTPPQDLIDQCAQHQVPLLSTPVAAAQLIDLLRIYLGKKLAPTTTVHGVFLDVLGLGVLITGESGLGKS
ELALELISRGHGLVADDAVELSRTAPGVIEGHCPQLLQNLLEVRGLGLLDIRTIFGETSVRRKMRLKLIVHLVRATAQDK
FERLPLQDITQDMLGLPIRKVMLQVAAGRNLAVLVEAAVRNTILKLRGIDTLGEFMERQAMAILQSSK
>SEQF1086_CAE41005.1 nitrogen regulatory IIA protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNHLSRILPAGNVVLDMLATSKKRAFEQAGLLFENHHGLARSVVFDSLFSRERLGSTALGQGVAVPHGRVKGLDQALAAF
IRLAQPIPFDAPDGQPVSMLLCLLVPEAATQQHLDILAELAQLMSNKPLREALASETDPAAVHRMLTTGQL
>SEQF1086_CAE41007.1 ABC transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDSHATLSTATAAGAAAGSLRATGLRKTYNGRTVVQDVSLSVVSGEVVGLLGPNGAGKTTSFYMIVGLVPADSGRIEID
GSNITSMPIHKRARMGLSYLPQDASVFRRLTVEQNIRAVLELQLGPNGKPLPEARIRDNLEALLEELQIGHIRANTAISL
SGGERRRVEIARALATSPRFILLDEPFAGVDPIAVIEIQRIVRFLKGRGIGVLITDHNVRETLGICDRAYIISEGKVLTD
GHPDEIVGDPAVRRVYLGEHFRM
>SEQF1086_CAE41008.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTHLRLSLAPLRLCSILLLAAAGAAQAQAQSGQAAPAEEPSTLILSDTLHYDDIKRQSIFTGNVILTRGLMTLTSDKLEV
NEDAAGNQFGVATADKGKIVTIRQDRPETFELIEGKGLRAEYESSKSQFDLIGQAIVTRYICGKPFDTIRGDRVRYNEKT
GIYQAQGGPNSSAAGGRVRSLAEPRAKADAAIAECRAKKQAPKKPQ
>SEQF1086_CAE41009.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKERFPSLIALFLLLALVVGTWWAADYAQRAVQVDPPRRLTHEMDSWARDFVMLRTDVQGHPINRLEGVYVEHFPDDDSY
HVTTPRAIGQQAGNPITIGVSKTAIMEQGGQRIVMNGDTHVHRQPDARNETLDVRSQQLILLPDEDVVFTDLPAQVNKGN
SRMNGTGMHYNNKTRQLRVSAAADVEIAGTEGRKRQSTETPANSNQNKP
>SEQF1086_CAE41010.1 probable hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTKNSPVSVPHPAEALVLARIPASVRERAAAVRLMVFDVDGVLTDGGLYYGEHGEMFKRFHALDGHGLRLLMEGGLKVAL
ITGRSGPIADRRAAELGIAEVLQGVRDKGGALSELAQRVGVQLNQTGYMGDDIIDLPAMQRAGFAASVANAPGYVAQAAH
WVSSQPGGQGAVRECCDLLLAAQGRLGTFLGTPALLGPGAIQ
>SEQF1086_CAE41011.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAHPDPTPEAILASARRTLQTEAQAIADLAARLDDSFVQVVGMLLACRGRVVVSGIGKTGHIARKLAATLASTGTPAFF
VHAAEAIHGDLGMVTRDDVLIAISYSGTGQELLTILPVVRRMGAGLIAITGNAESELARLADVHLDASVSQEACPLNLAP
TASTTAALALGDALAVACLEARGFGREDFARSHPGGALGRRLLTHVRDVMRHGPALPIVAEDAPLPRALEEISAKGMGMT
AVVDAQRKPVGIFTDGDLRRLIERVGDIRSLTVADGMTRAPRTIGPDALAAEAAQQMDDRRLNQMLVVDTAGVLIGALHT
HDLMAAKVV
>SEQF1086_CAE41012.1 phosphoribosylglycinamide formyltransferase 2 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTFPAPVLGTPLSPTATRVMLLGAGELGKEVVIALQRLGVEVIAVDRYADAPGHQVAHRAHVVSMTDPQALRQVIEQER
PHVVVPEIEAIATDLLVALEDEGAVHVTPTARAAHLTMNREGIRRLAAETLGLPTSPYRFVDTEQALREAIDGGIGYPCV
IKPVMSSSGKGQSIIRSADDIAAAWRYAQEGGRVGAGRVIVEGFIEFDYEITLLTVRARGADGQIVTQFCEPIGHRQVDG
DYVESWQPHPMSPVALQRSREIALAVTGDLGGLGIFGVELFVAGDQVWFSEVSPRPHDTGMVTLISQVQNEFELHARALL
GLPVDTRLRQPGASSVIYGGVDARGVAFEGVAQALAEPGTDIRLFGKPESYAKRRMGVGLAVADDVDQARAKAARVSQAV
RVRA
>SEQF1086_CAE41014.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAHALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41016.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPHAIEIVATLLFSVAVLHTFSVPFFARLAHRNGPHAGVWHLLSEVEAVFGVWAFVLIACMALMAGTDRAVQYMDTRNFT
EPLFVFAIMVVASSRPILELVGSVVRLLAAMVPIRRELATFFIVMSIVPLGGSFITEPAAMTLAAILLRDGYFRCSGRAG
FKYMTLGVLFVNVSIGGVLTSYAAPPVLMVAATFGWDTAYMATHFGWRAAVAVFLNAGVLTMLCRQALLEGAVGTGAGVN
ASGDASEKRPPVPAPVTLMHLAFLVGIVLTAHHPAVFLGMLMMFIGFAHAYQRHQSRLMIREGLMVGFFLAGLVVLGGLQ
KWWLQDLLGGLEPTVLFWGATALTAITDNAALTYLGSLVEGTSEAWRYMLVAGAVTGGGLTVIANAPNPAGFAILGKYFP
DGSISSGRLFIAALVPTLVAAAMFMLPV
>SEQF1086_CAE41017.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPIYAYKCSACGHAEDVLQKISDAPLADCPACGQSTYSKQVTAAGFQLKGSGWYVTDFRNNNGAGKPAAGQSAAPAASGG
DAGGASASAATPAPAAPAATST
>SEQF1086_CAE41018.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRHSVMRVFKKYFITGLLIWVPLAITVWVLGLLVATLEGFVPGFLSSQSLFGVDIPGFRFVLVITVVLLTGVFAANLLGR
SLLEHWERILGRIPLVRSIYNSVKQVSDTVLAPNGRAFRQAVLIQYPRAGSWTIAFLTGTPSGEVASYLPGEHLSVYVPT
TPNPTSGFFLMMPRDQVIDLQMSVDAALKYIVSMGVVAPADRRPVSPPTTPGAPLAPGAEP
>SEQF1086_CAE41019.1 aspartyl-tRNA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRTCYTGQVCRDHLGQTVTLYGWVNRRRDHGGVIFIDLRDRTGLAQIVFDPDNAEAFGTAERLRNEFCISITGLVRLRPE
GTANAELASGEVEVLCQQVEILNASVTPPFQLDDDNLSETTRLTHRVLDLRRPQMQHNLMLRYRVSIEVRKYLDQLGFID
IETPMLTKSTPEGARDYLVPSRVNAGYFFALPQSPQLFKQMLMVSGFDRYYQITKCFRDEDLRADRQPEFTQIDCETSFL
NEVEIREIFEGMIRHVFKVVQDVDLPTPFPIMSWTEAMQRYGSDKPDLRVNLEFTDMTDVMRDVDFKVFASAATTAGSRV
VALRVQGGGEMSRSEIDAYTQFVGIYGAKGLAYIKVNDVAKGREGLQSPIVKNLHDAALAELVKRTGAQNGDIIFFGADR
AKVVNDAIGALRVKIGHSEFGKKAGLFSGGWKPLWVVDFPMFEYDEEENRYTAAHHPFTSPKDGHEDFLESDPGKAVAKA
YDMVLNGWEIGGGSVRIHREEVQSKVFRALKIDAEEAREKFGFLLDALQYGAPPHGGIAFGLDRIITMMAGAESIRDVIA
FPKTQRAQCLLTGAPSEVDEKQLRELHIRLRNVEVK
>SEQF1086_CAE41020.1 putative endonuclease/exonuclease/phosphatase family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLIRVVSYNIHKGRSALGRRESLNDLRLGLYGLRPDLVFLQEVQGRNEVSSVLHAQHESLAAALRLQAAYGRNAIRTGT
DHGNALLSRFDILDHENQDISDHRLEQRGLLHARIDVGGTEVHCFVVHLGLFAGSRGRQIQALTDRIRQSVPDGAPLLIV
GDFNDWGDRLAPMFVQQLGLYEVFSHAPRSHGGDLPRLRDSVRRLGNVLRGVPNSVAVLERNNQLGMGGAYCPLPPPRTF
PAVFPWFRLDRIYQRGFAVRSARVLRGREWARLSDHSPLLAELELP
>SEQF1086_CAE41021.1 putative phospholipase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKAQIVRLHWTDGNAIRLLQNGGDFFPALCEAIDAARLSVHMETYIFLLDRTGRQMLECLESAARRGVKVRVVLDGFGSA
GTAETIRLRITQAGGQCRIFRPEPRWLGHLAFSRSRLRRLHRKVAVVDAELAFVGGINIVDDYDDLDPGDDIPAPRFDFA
VAVQGPLVPHILYAQDLLWVRLNWARLRRHPGDWMRLFKPVHADASPAGKLRAALLLRDNLRFRQTFEQAYLYGIQHARR
DILIANAYFFPGHQFRKSLMQAAARGVRVRLLLQGKPEYRMQYFATRALYDRLLRGGIEIYEYMPGYLHAKVAVIDNMAT
VGSSNLDPFSLLLAREANVVVDDQPFAWDLQERLERAIALGGQFIRPLDYQRRGWLRRCVDVAAYTMLRIGVALTGRAGR
Y
>SEQF1086_CAE41022.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPRRDLLDLLALAAVWGGSFLFMRVAVPEFGPAALMELRVGLAALFLLPLALWRGKPALIARHWKAILVVGTLNSALPFL
LYAYAAQSLGAGFLSVANAVTPVWGAVIGWLWLGDRLPRMRALGLLISLSGIIVLVWDKLDFHDGGTGPAVLAAISAPVF
YGMAANWTKRYLGHVDALTNATGSMVAASLVLAPLAIIHWPEQAVSFEAWRATVLLAIVCTGAAYIVFFRLIARVGPTAA
VSVTFLVPVFGVLWGVWFLDEAVTPRILAGAGVILVGTALALGLVGARRVAAAD
>SEQF1086_CAE41026.1 carboxyvinyl-carboxyphosphonate phosphorylmutase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNSTKRVLRERVAQRNGMLVAGAFNAMSARIVADQGFEAVYLTGAGLTNMHYGAPDLGIIGLRDVADATSRIRDAVELP
LIVDADTGFGNAVNVWHTVRVLERAGADAIQLEDQVFPKRCGHFAGKSVAPLSEMVSKIKAAADARRDEDFLIIARTDAR
AVEGFDAAIERARRFAEAGADILFVEAIVDQDEVGKLPQLLSQPLLVNIVVGGKTPPMPAAQLGRLGYSVVLYANATLQG
AVLGMQRALGALRRDGKLDEDPALLAPFLERQRLVGKPLYDELEERYKDA
>SEQF1086_CAE41027.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRKYIDCREFPSEMNCSVALSADSDAELLEAAVQHATTVHKHADTPELRAQLKTMFHEGTPPLAAQAGSRA
>SEQF1086_CAE41028.1 probable aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNDLATINDLHSVVEDDRNAIWHHMLQHDALQATAPWVVVEGKGTRIRDASGKEYLDATAGGFWTVNVGYGRERIANAMR
DQMLKLNYFAQSAGNVPGALFARQLVSKMPGMSRVYFSNSGSEANEKVFKMVRQISARHHAGRKYKILFRERDYHGSSIA
TLAAAGQPERAAQYGPFPDGFVQVPHCLEYRKQWDVANYGERAADAIEEVILREGPETVGLLCLEPITAGGGIIVPPEGY
WRRVQEICRRYDVLLHIDEVVCGLGRTGKWFGYQHFDIEPDFVTLAKGTASGYAAIACTVTHERIFEQFKDEPDDPLSFF
RDVSTFGGCAGSAAAALENLRILEEEGLVEHAAQVGDYLQACLRQLADKHAVIGDVRGKGLLQGVELVSDRAAKTPVSEA
DAKRVVAQCKAQGVLIGVITRALPGLNTTLCLAPPLILTRDEVDELCGAIDRALATVFG
>SEQF1086_CAE41029.1 probable amidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTSELWRLSACEIVAGVKSGAFSASEAVRAALDRMEAVNGRINAVVDSDPQAALAAAARVDARIAAGEDPGPLAGVPVTV
KVTHDQAGFATTMGIRKLKDHRAAANSPIVDNFERAGAIPIGRTNMPAFGLRWFTNGRLHGDTYNPFDRSLTPGGSSGGA
SAAVASGIGAIAHGTDIAGSIRYPAYACGVHGLRPTLGRIPNYNASFPERGLGGQLMSVSGPLARTVADIELSFAALAHA
DPRDPWWVPAPLAGPARPRRVALCLRPDGLEIDAAVADALLDAAARLRDAGWEVAELDDIPPMRDAAVAQVTLWLGDEYP
ALLAEAQAEGDPGALAMLRGQPQSAGVTLQSYCSALKARASYLRQWMLFFEDYPLMMLPVSARLTFANDLDTRSAADYDS
VWEAQMPQLGLAFMGLPCMSVATGMCGSAPVGIQLAAGRYREDLLFLAAEDIAARGMPPVPVDPV
>SEQF1086_CAE41030.1 probable ABC transporter, ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIFRKRDLQHRPVVLRIAGLSLVDGQPGAGSAILRDIDVDIRQGETVCLVGESGSGKSMTSLAVMGLLPKGHLRVTGGRI
ELDGQNLLDLGPAALRDLRAKRISMIFQEPMTALNPVMKVGPQIEEVLDSHTALPRREKKQRVLDIMEQVHLPDVARIYE
SYPHQLSGGQRQRIMIAMALVLEPRLLIADEPTTALDVTTQNQVLKLISELQHKHDTAVLFITHDMGVVAEIADRVYVMR
LGEIVESAPVEQLLREPRQDYTRKLLKSVPSLIPRPGRAAPQACATLQVQGLAKRYAMGGFPGRRREVQAAHDVAFSIQP
GRTLGIVGESGSGKSTVARCVMRLIEPSEGAIRVGDADIARLGPRQLKPFRKHLQIVFQDPYRSLNPRRTIGASLIEGPV
NFGQDRQAALAQAAELLELVGLPADALARYPHQFSGGQRQRIAIARAIAMRPDVLVADEAVSALDVSVQAQVLELLDTLQ
RKLDIAILFITHDLRVAAQICDEVMVMRHGRVVEHDTAENVLARPAHAYTRALIEAAPGRDWDFANFRER
>SEQF1086_CAE41031.1 probable ABC transporter, permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTLPQPASALQAVFRVTQLPAWCRFGWPPIAAALVLAVLVLATAAAYLYIPHDPIAINPLMRLKPASADHWLGTDALGR
DVFSRVMAGGQVSLLVGVAAAVISIAAGLCIGLVSGFFRVLDGVVMRITDAVMSVPSILLAIALVALNGPSIWSVIIAIT
VPEVPRVVRLVRSVVLSAREEPYVEAALALGTSMPGILWRHIMPNTLAPLMVQATYVCASAILTEAVLSFLGAGVSTEIP
TWGNIMAEARMYFQIRPGLMLWPGLLLSLCILSINLLGDTARDMLDPRLKRRGE
>SEQF1086_CAE41032.1 probable ABC transporter, permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFGYILRRVLATIPVVVIVAVFVFLLLRLTPGDAAAIIAGDSATPAQIENIRKSLGLTEPLTVQFRTWMTQLASGDLGTS
IISRQPVTKLIGQRVGPTLQIATLTIILSVLIAVPLGVLAAWRHRSWLDYAVMAFSVIGFSIPAFVVGYILMKIFAVDLR
WLPVQGFTSVFQDPQQFLCTAVLPCMTLATVFVALIARMTRASMLDVLGEDYIRTARAKGVKERIVLFRHALGNAAVPIV
TIIGTGFALLIVGVVVTESVYNIPGIGRLTVDAVLARDYPVIQAMILLTSALYVFINLLIDLSYTIFDPRIRY
>SEQF1086_CAE41033.1 probable ABC transporter, periplasmic binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFIARNAADPAVKIRAGARLAAVAAALCGLAATVPAAAQAPKTVTAVMHSGLRVLDPIITTAHITRNHGYMIYDVLVSMD
KDFNVRPQMADFSVSPDGLTYTFTLRENLWFHDGAPVTAADVVASLKRWGERDTGGQHIFDQTESLAATDARTITWKLSK
PFGPMLETLGKQSTVPPFIMPKRVARTPSSEAITDYTGSGPFRFVLDEFSPGVKVAYAKFDKYVPRNEPANWMAGGKVVK
VDRANWVTMPDAQTAVSALSSGEIDYLEQTPTDLLPILESNADVVLEVRDQLGYQALGRMNFKQPPFNDKRIRQAALKAM
SQEPILAAMVGNPKYYQVCGAVLGCGTPLASEAGAGALTGKGDVEGARALLKEAGYDGSPVVILQPTDVPILAAPPLVAA
QQLRAAGFKVDLQPMDWQTLVTRRTNKGAPSQGGWSMFFSYWMVPEVTTPLINATLNARGDEGFFGWAQDPELEAMRGEY
ITAGSPQAQLDVAKRIQARVMDEVTYLPLGQFQTVQGRRANLVDIIASPVPVFWQMDKK
>SEQF1086_CAE41034.1 probable transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRSIVNSELGVRSPTEEELEDPLFVQAAARTLQVLSAFHRAVRPMSLDEIAEASGVGRSSTQRILNTLRVLGYVERSDG
GRGYVPGIRILDHALDYLRLNTLISRASPVLLDLRRNALERVDLSVFDDLRLVYASRLQSKRETFFATLVGHSVPTFCTA
GGRAILSHLPGAEVDDIIARSDRAPFTDKTITALREIRKKVEQARVSGYAVTIEEVLVGEIGIGVAVLGADGRPVGAIHI
AGSLSEWTPEAFTARFAPLAVEAATAINRLS
>SEQF1086_CAE41035.1 probable transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVRPRTIDRERLLDIAESIISEAGAVTISFGGLAEAAGLSKASVQSVFGTREAMMEALLERWLRKEQRAYQKKIGPQSSL
RERVRRHVKITGKESSEANSRLAAVLTALVGSDATEGVMAKWYASRVGKFSAETQEERLLRIAFLAAEGAFFMRHVAGFP
MSDRLWRELFHDLLDFVAEPVGGAARSAA
>SEQF1086_CAE41036.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE41037.1 carboxynorspermidine decarboxylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLKTPYYLIDKRALLQNLEVIRRIRERSGAKVLLALKCFATWSVFDLMREYMDGTTSSSLFEVRLGREKFGGETHAYSVA
YAEDDIDDVVACADKIIFNSLSQLERYAPRASAIPRGLRLNPGISVSGYDLANPARPFSRLGETDLDRIAQAMPMIDGFM
VHNNCENRDFTRFDALLTELEHRYGHLLGQINWISLGGGIHFTEPGYALDAFCDRLRRFSEQYGVQVYLEPGEAAITNTA
TLEVTVLDVMRNEKNLAIVDAATEAHMLDLLIYRMSARVQPDQGPHRYVIYGNSCLAGDVFGEFSFESPLQPGSRISIQD
AAGYTMVKKNWFNGVRMPAIAIRELDGEIRLVREFGYQDYVDSLS
>SEQF1086_CAE41038.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRNVLIIGAGGVAHVVAHKCAQHNATLGEIHIASRTLDKAQGIVRSVHAMGNLQTNGVVKAHGLNALDIKATAALIRAT
NARIVIQAGTSFLNMAVLAACIETGAAYIDTAIHEDPAKTCEAPPWYANYEWKQAQACADAGVTAILGAGFDPGVVNAYA
KLAVDELFDEVSSIDIIDTNAGSHGKYFATNFDPEINFREFTGSVWSWQEGRWCENRMFEEQRAWDLPVVGRQTTYLTGH
DEIHSLSTHLNVPNIRFWMGFSDHYINVFTVLNSLGLLSEQPVRTAEGQQVVPLKVVKAVLPDPASLARTYKGKTCIGDL
VRGVKDGRPHEVLIYNVCDHEQAYREVGSQAISYTAGVPATAAALLIADGAWDNRKMNNIEQLAPRPWLQLLETMGLPSR
IRDAHGDRALLSPCGKLLKAA
>SEQF1086_CAE41039.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41040.1 hypothetical protein BP0734 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAISTLGPTAPGGLHWCRQRNAVAVSYGYRFNRTFLILMPCPGGQLAWPPP
>SEQF1086_CAE41041.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKKNYPAYFAATLLALAGLSAQAAPVDYRIDPEHTEVVVTWDHLGFSKPTAHAGGVTGVVRYDAASPADSAVDLRIPVSK
LTSHVPKLDGMLQGVQFFEAARYPDIRFKSTSVTDRGDGRLQIDGILRIKGIDKPVVLQARRNGQGMHPMAQRPAIGFDA
TTTLKRSDFGVDAFAPDVSDEVQLRITIEAVAEAAR
>SEQF1086_CAE41042.1 putative ferric siderophore receptor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVITFNLFSVKHSMRARPSAATRALHSSSRPRRLIPALLGALACLGTGVQAAPIDVDIPPQNLAQALHQLGRQANLQVLY
SQDLVDGQRSPAVQGRMEPAEALERLLKGRNIRYSIQHNTVTLTPMPLTATLPAISVVGALPDSDTYVATGTTAGTKTDT
PLIEIPQSISVVTAAQIREQNPQTLGDAVRYTPGIVVQEGFNRTDDPFIIRGFDVRTNPGVMFRDGLKIPLPHYSAMSEP
YALERIEVVKGPASVLYGQASPGGIVNVVSKRPTDSPLRELQLSGGSHSNRQLAGDFGGRIDDEGRLTYRLTGLARNADT
MIDHVPDDRYYLAPALTWRISPDTSLTLLASYMKNKTINNAGYPLEGTVKYNPNGRIPRHRFTGEPDWSKWDQEVANVGY
QFAHRFNDTWQFKQNLGYAQSRNRVNHAYWWTWVPGSDFSTAERGAYRRDDDAHGVSIDNQFEATWQSGRFRHNTLFGLD
YTETSFTRKQYAGYNNLAPIDFFDPAYGSDVLLPAKPDTYTNEKRSQLGLYLQDQIKFDDKLVVVLSGRYDNADGSTLNK
LSGVNTRTGDNAFTWRTGLLYLADNGLAPYTSYSTSFQPQAGTTSPARGTTPFDPTKGKQWEAGVKYQPNGSNSFITASV
FELTRTNVPTTDPANPVYSVQEGEVRSRGLELSATANLASGWNLIAAYTYTDAEITKSNSNTLGNTPEAVPRNMASLWSD
YTVPSGALAGLNIGAGVRYMGSTYNNTNAAKVGDYTVFDAALRYDFGARSPSLKGWTADLTVRNLFDKDYVASCTYACFY
GEGRTVLGRVTYKW
>SEQF1086_CAE41043.1 putative inner membrane sensor for iron transport [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAVPPSKQDDLLTEQAVQWCVRIHDACCSEQDRAALQAWLEADPRHAREYEAVRDIWTLAQDLPAHEAPAKACAPRRRPY
PAARRALGACALGLACWAAGWWFAVLPSSYHRYASDARVATVTLGDGTEVDMNIDTAMVYRNYRDARRVRLSDGEAYFRV
FHDASHPFVVEAGAGTITVTGTAFNVWKSGDNVVVTLVEGRVDLRASATGKTVSLQPLTQARYAGRGEPVTRAVDGAQSA
AWRHGKLVLDNTTLRDAIMQINRYLPAEARYTAVDPAIAGLRLGGTYDVRNVGELARALPDILPVRTVRKADGSLALVPN
PPR
>SEQF1086_CAE41045.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41047.1 putative DNA methylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPPPSRKPAAPRRVRRPAAAPVPRLAPVAGPGRLIDEGLSFYEASLAGKAERYGRGETPHTIHVWWARRPHSAMRALVYA
ALRAPADKRAAARLSELGATPVPQPGLLAEAAAELAGQYGGAPRVLDMFGGGGTIAFEAALLGCDAHSIDVNELAVFLQQ
ANLTYGATLDHGLLKQLAHRHGQAVLQRLARRTETLYPLRGRLASQAEKPIVYLWTYRHACPQCGYAYTLSRRPWLSKKA
GKALAMVATPGPDGDGVDMVSLPDGEPPPSRWAGRGATACPRCSATATPGIADSADHCVAVVTSAGVGKQFALRDDALPA
AGLLREQEETLLQRTGLALPATTLPAWSGIVNPALYGMRGHADLFNPRQRLVTLMLLEELLAEHRTLQAAHGADVARFVS
ASLSGLIDQMVDWNCRLSMWIPQNEQVGRAFCGPGVAMLWDYAEVDPVGTGPGNLHAKLERICAGIDALALLRRPVQVQR
ASAAALPYPDDSFDAIVTDPPYYDNIFYSVLADFFYAWKKPLIDAIENRPTTPPHVPTANSGHDELVASRQRAGGSARAA
HDEYCARLGQALREAARVLKPDGLLAFVYSHASVLGWAALVTAFRAAPFTINSVQPLSIERKARPRALASEAVNTCTTFV
ARRAQAPRPVLARAALQAQFDAILRGGLHRSLLRAGWHEHDAGVALIAQGVALLANCAAVEDADTAALIVDLAGQVSALL
PGFSIKQRASL
>SEQF1086_CAE41048.1 putative transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKKFSDRLKHARRLRQLSQENLAHISGLSQSAVASYENGLRQSSRSIRKLAIALQVNLDWFETGVGPMELEAYPSGPAAW
RPGLMEPGGERAAAPWPFRAVAHARYQALSARDKLLLEQLVRTFIDACHADYGRAPPWPRER
>SEQF1086_CAE41050.1 putative transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTFSDRLKHARALRSLTQQDLARASGLSQSAVASYENGQRQSSRSVRKLAAALQVNLDWLETGKGSMESLADYSASPAG
GAYYLMEPGSGEAPPRALPPWPFTTIARAQYEALAARDKRLLEQMLRSFVEACHAEYADGRGRARKH
>SEQF1086_CAE41051.1 putative transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLAFSSVMIEARVQLEAGWRQAGWIVDWCEGQHALARLLAMHPPDAVALCGVAGTLSGLVRTTRTSVPAAVVVALLSEGG
LPERIAMMRAGVDLCWPIETQVEEVAAMVDAFARRGTASAAAASAWYLSNAGRVLAGPGGVRLPLTVAEREFMARLLAAP
GHRLARQQLACGFRQRGVQDGAPVSSEVLPSWTANSSHAASYDAAAGLSRNVDVMVSRLRAKAQRMGINLPLLSVRRWGY
LFIADSDAG
>SEQF1086_CAE41052.1 glutamate 5-kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGSSLVTNEGRGLDRAAVGHWAAQIAALHQQGKQVVLVSSGAIAEGMARLGWRKRPSAMHELQAAAAVGQMGLCQAYEAA
FAEFGLRTAQILLTHEDLADRHRYLNARSTLFALLRLGVVPIVNENDTVVTDEIRFGDNDTLGALVTNLIEADALIILTD
QRGLYEADPRRDPAARFVAHAQAGDAALEAMAGGAGSGVGTGGMLTKILAAKRAAHSGAHTVIASGRERNVLTRLAQGEC
IGTELRAVLPVWSARKQWLADHLRLRGRVVLDDGAVHALLHEGKSLLPIGVAEVQGEFERGDVVACVDMHGRECARGLIN
YSSADTRRILRQPSSQIARILGSMTDPELMHRDNLVVT
>SEQF1086_CAE41053.1 probable GTP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKFVDEATIEVIAGKGGNGVASFRREKFIPKGGPDGGDGGRGGSIYAVADRNINTLIDFRYARLHRAKNGENGRGSDQYG
AAAPDITLRVPVGTVVHDADTGEVLFDLDRHDQKVTLAAGGAGGMGNIHFKSSTNRAPRQWTPGKEGEQRRLRMELKVLA
DVGLLGLPNAGKSTLISRISNARPKIADYPFTTLHPNLGVVRTSPSRSFVVADIPGLIEGASEGAGLGHLFLRHLARTRV
LLHLVDISSPDPEADPIEQAVVDANAIVEELRRYDPELAAKPRWLVLNKLDMVPDAQDAQQRFCAEFGWTGPVFAISGLN
GEGTQDLIWALQDYLDAEKRKDQDAQDQADGTYVFEDPRFDASRGGAAPATPPGGDE
>SEQF1086_CAE41054.1 50S ribosomal protein L27 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAQKKGGGSTRNGRDSESKRLGVKVYGGQSILAGSIIVRQRGTRFHPGVNVGVGKDHTLFALANGKVHFSVKGALNKPTV
SVVAAE
>SEQF1086_CAE41055.1 50S ribosomal protein L21 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYAVIKTGGKQYRVATGEKLKVEQIPADIGQEITLDQVLSVGEGDQLKVGTPLVSGAVVKATVLAHGRHDKIKIFKMRRR
KHYQKHQGHRQNYTEIRIEAITA
>SEQF1086_CAE41056.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAVPHDDLPEDLERALLVGRVWQPAPVDGPCVVAVRGGRLYDLTAVTPTLADLLDRGDRVALARNAAGECLGPAADWLAG
RAAGAMLAPCDLQPVKAAGATFAASLVERIGAEQAGGDAGRAAAVRERIAGLIGTDLSQLRPGSPEAARLKAVLWARGMW
SPYLEVGLGPDAEVFSKAPPMASVGYGSWIGLLPESEWNNPEPEIVLAVDARGQAVGATLGNDVNLHDVEARSALLQNRA
KDNNGSCAMGPFVRLFDASYGLGDVRRADVRLRIEGQEDGFVLDATSHMREISRDPLELVRQTCGGHHQYPDGFMLFLGT
MFSPTQDRAAAGRGFTHRPGDLVRIASPRLGALVNRVGLATAIAPWTFGVRALYANLRRRGL
>SEQF1086_CAE41057.1 octaprenyl-diphosphate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNLPELIAPIADDMKAVDTVIRDRLNSDVVLIRTIGDYIIGAGGKRMRPAMVLMVARALGYQGTHHQLLAAVVEFIHTAT
LLHDDVVDESDLRRGRDTANAVFGNAASVLVGDYLYSRSFEMMVEADSMRIMQILSQATTVIAEGEVLQLLNVHDPDVSQ
ERYLQVVRYKTAKLFEAAAQVGAVLAGASPEQETAAAAYGRHVGTAFQLVDDVLDYSGDAHALGKNVGDDLREGKPTLPL
IRVMETGTPEQRELIREAIKTGQADFAAVAQAIQATDALAHARQAAENEAELARQALSAFPVSLYQKSLLEFCAFAVNRD
R
>SEQF1086_CAE41058.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLNFRQVETFRAVMLTRSMTQAAKDLHTTQPNVSRVIAQLEARIGLRLFERVAGKLVPTREGEVFFRDVEMTFAGLRSLE
SSAATLRRRGTGHLRISAVPSPALVTVPEAMQLFAERFPDVTVSMHVADSITVCQWTAAGYSDIGVASDIFSSPGIGHHV
ASEALGVCIVPAGHRLAGMPRALAPADLAGERFLSLSPNDAMRKEIDKVFAAAICHMVGLGLGVSIANPDVADGFRSLDI
AIKPFAPDIRFSTYLVYPSSSPLSLLAQTFCECYEISAGRKRARRQAG
>SEQF1086_CAE41059.1 putative hydantoin utilization protein A [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLRIGVDIGGSFADFAVLDESTRTIQTLKVFSRPDAPGSEVLAGIEQLKARHGLDPAQVSYFTHGTTVGVNAVVQRRGL
KLALITTRNFEDVLDIGRLKIPDMYHLMSKRPAPLISRDRVFGVDERLGADGSVVAPVDEASVLAAAEALREAGCEGVVV
SLLHAYRNPAHERQVKAILQRALPGMFVSCSHEVWPIIREYERTLTATIGGYVQPRVSHYLESLQGALRESGVPVDLKVT
KSNGGVMSAEHGKANCVQMILSGTASGVIGAAYIADLCHIPNCMSLDIGGTTADIALIVDGKPQFATGEYIGDFQIHIPS
VSVSSVGDGGGSIAWVDELGVLKVGHQSAGSTPGPVCYGKGGTQPTITDAFAVMGVIGSQQLGYNAVQVDVEAARRSIEP
LAEKLGTDVLRTAEAIVNVSVSSMYAGVSRVISRFGIDPRVFSLMPFGGAGPMLACYLAKALKVQKLLVPTTPGVLSALG
GLIADVKNDFVRTTYCDLNAATVGSLAQAASELEAQARAWLVAEVGTDADAEIDISADMRYRGQSFEIDTPVERAWLEAG
AIDSLSQAFHKEHERLYGHGDASAGVQVVAMRLVITSRTPKPELNHIAQGAGVPPRESTLRIWLEGQYRDVPLYRCEKLL
AGQAFSGPAIVAQDDCTTCVLPGFDARVDTYGNLELTALALN
>SEQF1086_CAE41060.1 hydantoin utilization protein B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNFDKTVLQIFANYCVAAAESMAHTLMRTAHSAFVKETEDFSCTIMTPRGQTFASPKTLGATWYPGLDFSGAIDMIDGYE
PGDICMTNDAYSGYVATHTPDIMMWKPVYYQGEMVCFVGGHIHNTDMGGAVPASLSRTLTEVHQEGIRFPPTKIVRRGVL
NEELMRLMELNVRSPDQNRGDLQAQTAMLMTGERRIVEIIERFGLQAFKEGMAAMLDYSEQQARAIVRAMPDGEYFFAEY
ANEDSLNGKPLRVAITLRIRGDELEFDFTGSDPQLTSSLNMPTGGKERHVLALVGLNYVLYSLNPEILLNAGMLRVARCI
LPEGSVVNPLAPAAVGMRSLTCKVVQYATMGVFSQVVPDRLPASPAGGMSIVNVKTTDRDGKTIIAAIEPVGGGAGGDPY
SDGADASGAIVAFLRNTPVEINETEVPIRITRYGMVPDSGGPGRYRGGLGTCMEFQVYTPNSAVTARNRDRSRFASWGVL
GGKAGTVSRFLRNPGTAHEEDLGVHDFIHCQPGDVIRLEGCGGGGYGSPWERDPARVLHDVRCGYVSVENARGQYGVVIE
GGEVSRDATARLRAELAGRDPAVAHYDHGAGRDAFEAVWTLARYERMTHHLAGVAPIWRHFLKIKIFDALEQRLGGNVAD
TRPEIVDEIFAQLLKACPQLQAASA
>SEQF1086_CAE41061.1 putative amino acid deaminase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQQLKQALLRIDTPHTPPAEVDVAIIGAGAAGVATAHELTRLGVRVAVIEKGWVAAEQSSRNWGWCRTLGRDIRELELAR
LSVDLWRSVQADTGVDAGFRETGVVFVTDDPSELRTWERWQQAAAARGVPARMLSAREANATHAWGKTPWIGGIRTERDG
YAEPARAIPLLARHAMDNGAQVIQQCAVNELLVEGGRVAGVQTECGLVRASQVVVAGGVWSSLFCRKHKLPLPILQVHSS
ASRSRQFDTGGAAPARATHFSFRHREDGGLTLAKSGRGTMHVVPDLLRYGMKFRSLYRARKANVRLSIGRQFFAQCWDEF
RYFHLDRPPYARHRVLDPGPDMALVRSAYEDAGAVFPGMGSDLIDQAWGGVIDNTPDGIPVISDVARMPGLYLCTGFSGH
GFSSSLGAGRCLAQWIARGRSDLSLDAFSYARLVDGRRLQPSILY
>SEQF1086_CAE41064.1 succinate-semialdehyde dehydrogenase [NADP+] [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLSVGNAALLPGRNLIGSEWREAALGARFAVADPATGKVIAHVPDSGARDAGAAVTAAHQAFADWRRTPAKVRAQIIKR
WNALLHENAEDLARLISSEQGKPLAEARGEVSYAASYVEWFAEEATRADGDLIPSPAQGRRMFALREPVGVVAAITPWNF
PAAMIARKIAPALAAGCTVVCKPAEDTPLTSLALTALAQQAGVPPGVLNIVTASRGRAAEVADAWLDDPRVRKITFTGST
PVGKHLARRSADTLKRVSLELGGNAPFIVFDDADLDAAVEGLMVSKFRNGGQTCVCPNRIFVQAGVHDAFVRKLAARVEG
LVVGPASDPASQIGPMINARAVEKIEHHVADALERGARLAVGGKRIHSARCAGDHYYAPTVLTGVDETMACFREETFGPV
APITVFASEAEVVAAANATAFGLAAYFYSTDVRRIWRLADALETGIVGVNEGALAAEAAPFGGVKDSGYGREGSRHGLAE
YMQIKYVCQGQLD
>SEQF1086_CAE41065.1 cyclolysin-activating lysine-acyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLPSAQAPSLLNPTDDFAALGNIAWLWMNSPMHRDWPVHLLARNTLAPIQLGQYILLRCNDVPVAYCSWALMDADTELSY
VMAPSSLGGNAWNCGDRLWIIDWIAPFSRDDNRALRRALAERHPDSVGRSLRVRRGGDTARVKEYRGRALDAAAARAQLD
RYHAELIAGLRASNGGYAPRGRGTA
>SEQF1086_CAE41066.1 bifunctional hemolysin-adenylate cyclase precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQQSHQAGYANAADRESGIPAAVLDGIKAVAKEKNATLMFRLVNPHSTSLIAEGVATKGLGVHAKSSDWGLQAGYIPVNP
NLSKLFGRAPEVIARADNDVNSSLAHGHTAVDLTLSKERLDYLRQAGLVTGMADGVVASNHAGYEQFEFRVKETSDGRYA
VQYRRKGGDDFEAVKVIGNAAGIPLTADIDMFAIMPHLSNFRDSARSSVTSGDSVTDYLARTRRAASEATGGLDRERIDL
LWKIARAGARSAVGTEARRQFRYDGDMNIGVITDFELEVRNALNRRAHAVGAQDVVQHGTEQNNPFPEADEKIFVVSATG
ESQMLTRGQLKEYIGQQRGEGYVFYENRAYGVAGKSLFDDGLGAAPGVPSGRSKFSPDVLETVPASPGLRRPSLGAVERQ
DSGYDSLDGVGSRSFSLGEVSDMAAVEAAELEMTRQVLHAGARQDDAEPGVSGASAHWGQRALQGAQAVAAAQRLVHAIA
LMTQFGRAGSTNTPQEAASLSAAVFGLGEASSAVAETVSGFFRGSSRWAGGFGVAGGAMALGGGIAAAVGAGMSLTDDAP
AGQKAAAGAEIALQLTGGTVELASSIALALAAARGVTSGLQVAGASAGAAAGALAAALSPMEIYGLVQQSHYADQLDKLA
QESSAYGYEGDALLAQLYRDKTAAEGAVAGVSAVLSTVGAAVSIAAAASVVGAPVAVVTSLLTGALNGILRGVQQPIIEK
LANDYARKIDELGGPQAYFEKNLQARHEQLANSDGLRKMLADLQAGWNASSVIGVQTTEISKSALELAAITGNADNLKSV
DVFVDRFVQGERVAGQPVVLDVAAGGIDIASRKGERPALTFITPLAAPGEEQRRRTKTGKSEFTTFVEIVGKQDRWRIRD
GAADTTIDLAKVVSQLVDANGVLKHSIKLDVIGGDGDDVVLANASRIHYDGGAGTNTVSYAALGRQDSITVSADGERFNV
RKQLNNANVYREGVATQTTAYGKRTENVQYRHVELARVGQLVEVDTLEHVQHIIGGAGNDSITGNAHDNFLAGGSGDDRL
DGGAGNDTLVGGEGQNTVIGGAGDDVFLQDLGVWSNQLDGGAGVDTVKYNVHQPSEERLERMGDTGIHADLQKGTVEKWP
ALNLFSVDHVKNIENLHGSRLNDRIAGDDQDNELWGHDGNDTIRGRGGDDILRGGLGLDTLYGEDGNDIFLQDDETVSDD
IDGGAGLDTVDYSAMIHPGRIVAPHEYGFGIEADLSREWVRKASALGVDYYDNVRNVENVIGTSMKDVLIGDAQANTLMG
QGGDDTVRGGDGDDLLFGGDGNDMLYGDAGNDTLYGGLGDDTLEGGAGNDWFGQTQAREHDVLRGGDGVDTVDYSQTGAH
AGIAAGRIGLGILADLGAGRVDKLGEAGSSAYDTVSGIENVVGTELADRITGDAQANVLRGAGGADVLAGGEGDDVLLGG
DGDDQLSGDAGRDRLYGEAGDDWFFQDAANAGNLLDGGDGRDTVDFSGPGRGLDAGAKGVFLSLGKGFASLMDEPETSNV
LRNIENAVGSARDDVLIGDAGANVLNGLAGNDVLSGGAGDDVLLGDEGSDLLSGDAGNDDLFGGQGDDTYLFGVGYGHDT
IYESGGGHDTIRINAGADQLWFARQGNDLEIRILGTDDALTVHDWYRDADHRVEIIHAANQAVDQAGIEKLVEAMAQYPD
PGAAAAAPPAARVPDTLMQSLAVNWR
>SEQF1086_CAE41067.1 cyclolysin secretion ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTSPVAQCASVPDSGLLCLVMLARYHGLAADPEQLRHEFAEQAFCSETIQLAARRVGLKVRRHRPAPARLPRAPLPAIAL
DRQGGYFVLARFEPGADQAVLIQRPGQAPARLGQAEFEALWAGELLLCACAASPTQALARFDFSWFIPALVKHRHLIGEV
LLISLVLQFIALLTPLFFQVVMDKVLVNNAMETLNVIAVGFLAAILFEALLTGIRTYLFAHTSSKLDVELGARLYAHLLR
LPLAYFQARRVGDSVARVRELEHIRAFLTGNAVTVLLDVVFSVVFIAVMFFYSVKLTLVVLAALPCYFLLSLVLTPVLRR
RLDVKFNRGAENQAFLVETVSGIDTVKSLAVEPQWQRNWDRQLAGYVAAGLSVANVAMLANTGVTLISRLVALGVLWVGA
TEVVAQRMTVGELVAFNMLSGHVTQPVIRLAQLWNDFQQTGVSMQRLGDILNCRTEVAGDKAQLPALRGSIELDRVSFRY
RPDAADALRNVSLRIAPGEVVGVVGRSGSGKSTLTRLIQRMFVADRGRVLIDGHDIGIVDSASLRRQLGVVLQESTLFNR
SVRDNIALTRPGASMHEVVAAARLAGAHEFICQLPEGYDTMLGENGVGLSGGQRQRIGIARALIHRPRVLILDEATSALD
YESEHIIQRNMRDICDGRTVIIIAHRLSAVRCADRIVVMEGGEVAECGSHETLLAAGGLYARLQALQAGEAG
>SEQF1086_CAE41068.1 cyclolysin secretion protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRALRELAARHGRVLAASWRQRHRRPAGWFDPVETEFLPSALSLQERPISPTARWLARILMALAAGALVWSVVGKTEIV
VHAAGKVVPVGQSKIIAASETGRVARVLVADNSRVAAGDVLLRLDAGVTEAEERKWRVQAAQARQDEARSRAMIRALDTG
RAPVLAELPADPGMMAAQSYLDSQYADYQAQLRSIEAAIATYRRELGLVTQIAHAHRGLRRDGDVSQQAYLEKEQARMTL
EGRLRQSEAQRAALQTQTRRQAFETLVLARKLAAQAEQEIARTSAQRSRLVLTAPVDGVVQQLVALTEGTAVAATQPLMM
VVPSGAGIQVQAQLDSKDIGFVRAGAPATVKVGAYDYTKYGTLEGKVLYVSPDTVVDDRQQHSYRVTIALAHPALEVDGK
PRLLKEGMAVQADIRTGSRRLIEYLLSPVARHAGESLGER
>SEQF1086_CAE41069.1 cyclolysin secretion protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAVQVRRRGRALALALWAGFALSVGGGVRARDGLATPPAFEGQAAPAVSWPCPPPADRLDDLALLEAIDLALCHSPALR
QGWARIKARSAEVGLARAPYYPSVALSAGRSAQRRSTGLGEDGVRNNVMAVTLAWRLFDSGARSAALRAAQAQLDEAAQA
YGAVLQDKLAEVVGAYYEAATARQALHTAVEDTEIARRSASIAARRARAGLDSHGDVLHAQAALERARLAQAQAEGAQAR
ALAGLAQVLGVDPATPIVLAPGPLAPQRIEDRELAQWLRDARQRHPAIKAAQAGLAAATAQVDVARATDMPTVDLSLGHY
RNSSENVSVFAGSSRSVSASLNLRIPLFDGFARRHRIQGARAEVQRQEALLDQARLATGAAVARAYADLRAARASHEASL
RWLKAARAAYESDLRRYEAGVGGVAELLRAQSDWLSARQRHVLYAAQLRTRALALLAAAGELGRSTIDGDPPKE
>SEQF1086_CAE41070.1 probable LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMVMDLRWFQDFLTLAECGQFTTAAELRHVSQSAFSRRIQSLETWVGTPLIDRGCFPTRLTAAGEQFRSAAAEIVRKVID
ARGEAGATGHDSMVLRVAMPHCLATSRFPAWCARWQQVGGAASLRLHVGNVHDSVEWLAAGVVDLLVCFRHAVEDIQLDA
QSYMRAGVEADVLRLYRPAGMALDEAELACEAPQARYPYVSYAQGAYFRRLIELSCGPLLQRAVLQRVCETDFVDGARDL
VRAGVGLAWLPDSSARAAVEHGEIVAVADRRCAIPMEICMYARRHGPAQEAVERVFDQFGRG
>SEQF1086_CAE41071.1 probable extracellular solute-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRLLNALTAALAIGAAAAGQAHAADLDGTLKKISDTGVITIGHRETSIPFSYYDANQKPVGYSIDICTRIVDAVKTRIK
RDDIQVKYLPVTSATRIPLMGNGTIDLECASTSNTLDCQKQVAFSVTTFVTGNRFISLKSANLKTIDDLKGKTVASTSGT
ANIRQANEINEARSLGMKVVPVKEHAEGFLMVETGRAAAFIMDDILLYGLAANAKEPDRYQVSGDSLSIEPYAIMLRRDD
PQFKALVDDTIKSLYASGDFEALYKRWYQSPLPPKGINLNVAMSEVLKRVVATPTDSGDPVAYK
>SEQF1086_CAE41073.1 glutamate/aspartate transport system permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSFDYQAIIDALPYLFLTGLRFSLLLTLSSAAGGVVLGALLAIARLYGRRWVAWPAAIYVNLFRSLPLVLVIFLIYFIL
PYLLQWITQAERPIVLGATGSAFVTFILFEAAYFSEIIRAGIGSVGPGQYAAGSALGLTHGQVLRKVILPQAVRNMLPVL
LTQVIVIFQETALVYVLSLPDFLGAATKIAQRDNRLVEMYVLVAVVFFVLSFTASRGVRALRARLGA
>SEQF1086_CAE41074.1 glutamate/aspartate transport ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MELLSMIEIERLGKCYGDLPVLKDCSLAVARGEVVVVCGPSGSGKSTLIKCVNRLEPFESGRIVVDGTDVGAPGTDLPAL
RARVGMVFQHFELFPHLSVLENVCLGQMSVLGRSRAQARAKADALLERVGVAAHRDKHPGQLSGGQQQRVAIARALAMDP
VVMLFDEPTSALDPEMIGEVLDVMTGLARDGMTMMVVTHEMGFARRVADRIVFMEAGEIIDDVASAEFFGSAASPRSREF
LSRIISH
>SEQF1086_CAE41075.1 probable aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSLFYINGSFVPAEQARVPAMDRGFLFGDGVYEVMAVIDGMLLEFERHAARLARSLGEIGIANPLPRERLLAVCRELVS
RAGLREGSVYVQVTRGADARRDFAFPSGVEPTVMLFTSEKDLRVNPLAQSGVQVATVPDLRWQRRDIKSVSLLAQVLAKQ
AAQARGAFEAVMVDAQGVVTEGSSSSVLLVNAAGEIVVRPLSQDILPGCTRAAVLELARERDMAMVERPFTLDECRQARE
VILTSALQFVLPVIAVDGEPVADGRPGPVCAALRELYLRHTLATAL
>SEQF1086_CAE41076.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLIVAARFDTFPDVENAAQRLFSEGFTKQDVHVFYVNSAGEHSRYAYGGDRRSDPDSGRADMGAILGAALFGLAFAIAG
GFIVAGLNESTIAMLAAAGVGAYIGSLFGALWVTGHLARKRGEAAPVDHPEVRPAGLLLALHTDPTRETLACQVLRAANG
HDVEHAEGVWRDNRWQDFDPLKPPQREP
>SEQF1086_CAE41077.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKSINKYLAATLASLGLAAGAAATDFPKNEVRLVVNYGAGGNTDVASRALAKGMEKPLGKPVIVENKPGALGTIGPGYVA
RQAPDGYTVGVVTYSTQAIMPHLMKLPYTMDDFDFVAGVGRYRYGITVRADSPYKTLQDLVEAAKKPNGMFFGAPSSPNN
LALLELGRLTGGKFEQVSYKSGSETVTALLGGQVDVIVQNPSDVLPHIRDGKLRMIASASPMRWPELPEVPTIQESGWPV
QIDSWIGLATPRGAPADVLAKLQQAALAAVADPVTRDSFEKLGVDPASLKGSEYAELLKQGHEEMGRMIRDANLPRIN
>SEQF1086_CAE41078.1 putative acetoacetyl-CoA reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSEPRIAVVTGAGRGIGLASARALLAAGNHVVTIDRGAIDTQALFGAQHDRVTAASADVQDLPALQALKARVEAELGPVS
ILVNNAGVSPKRPDGRSSGILEVSEEEWAQVLGINLTCVMRLCQLFLPAMRDQGYGRIVNVASLAGRARSIVAGPSYMAS
KAGVIGLTRAIASEMGPYGITANCVAPGRILTEMAQQAGPEVNQRYAEQIPVRRLGTPEEVGTSIAFLCGPDAGFVNGAI
IDINGGFYMP
>SEQF1086_CAE41079.1 putative acetolactate synthase large subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTLPKPLSAPGFTLDGTVAHAIVRALARHGVDTLFGQSLPSLLHLAAEQAGMRQVAYRTENAGGYMADAYARVSGKPAI
VTAQNGPAATLLVAPLAEAMKVSVPVIALVQDVNRDQTDRNAFQELDHIALFQPVTKWVRRVTEASRIEDYVDQAFAAAC
SGRPGPVALLLPADLLAAAAPAPALPRNNSLGHFPLDRSVAAPQAIARAASLLAQAQRPVVVAGGGVHISDASAAMAALQ
ETAHLPVATTVMGKGAVDERHPLSIGVVGSNMGPNGPTRFQRRLIAEADVVLLVGNRTNQNGTDSWQLYPKNAQYIHIDV
DGLEVGRNYEALRLVGDARLTLEALTAALAGQDLAARRQARAGVEQAIALGHEKHLEDSAAVRLSDASPIRPERIMHELQ
QQLDEQSIVVADASYSSIWITHFLTALRPGMRFLTPRGLAGLGWGFPMAMGAKLANPAAEVYALVGDGGFGHVWSELETA
ARMGVKVTLIVINNGILGFQKHAENVKFGAHTSAVAFAPVNHTAIARACGCTGIRVEDPAQLADALAQARAASGSALIEV
ICDENAFPPITFFTPDAGVQA
>SEQF1086_CAE41080.1 probable GntR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATLANRPLFAPIPPSMNMPLAPMARENIAAVIYRQLKQLLMMGELKPGEILTLRMLTERLGVSQTPVREALLQLVSERA
LAMSRGKSVSVPAPTREKLQELRDIRLTLEVLATERATPRISDAEIKTLERLHREMVRYKNSEQREGVLKTNYEFHFTLY
NASGMPDLVAIIEGLWAQTGPSLTYLYQKPFAHLYDAHPHLPLIEALRRHDVEAAVAAIRRDVAGYGAALMERLPAEAGQ
PAGG
>SEQF1086_CAE41081.1 hypothetical protein BP0775 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLHPVVCLDRSRRGPGDFPLLSMSAVAMRRGVSALLGVAGTLALAAPAWAQARQEAASAAHPTWMAAAGNWQVLEGGPG
VARVKQRTTGVYAGSEHALGAGLRLGGVLGLTRSTARFDDLYAKGHVNSYSLALYGARTVAAGAGDFNAVAGAAYTWHDM
DTRRHFHWAGTSQTLTADTHGSTFQAFGELGYRWRASARVQIEPFAALAWRDVRTRAFVESGGWAAISAGPSRLTQTTTT
LGVRGEAGYMLGPAPGKLRLTLGWRRAFGDVDPQATLVLDGGNALAATGAPIARDAALAGLGAELALSRSAAIGLAYIGQ
YSGGNREHTGSLSLRWLFGA
>SEQF1086_CAE41082.1 probable GntR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYKTTTEPAEKGRRAFSQVLEKLREMVISYEIKPGERLNEVALAERLGVSRTPVREALHFLARDGFLAEAGRGYVRRPLN
LKEMIDLYETREVLEVACLQLAAGRATPQRLDALEAFLAESRAKSPDLPVTELVSLDETFHHMLAEMSGNHELQRILHNV
NERIRFIRWINMERIGRDKTQAEHAAILAALRAGDIATAQQNLRSHISKRTEQIKECIAQGLAHIYLDDDETSPGA
>SEQF1086_CAE41083.1 probable Zinc-binding dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKAVVIHGHGGPEVLQYDTAFPDPKAGEGDVILRVKATSINYHDVFTRRGMPGIKLDFPVIMGLDVAGEIVEVGPGVQGW
KAGDRVLVDPINRAEGGLMGETVHGGLAELCKAREHQLIRIPDGVSYEQAAALPVAFGTAYRMMHTIGQVQAGEKVLVLG
ASGGVGVGCVMLAKIAGAQVIACASSEAKMQRLRELGADHVINYADTDFAKAIYELYGKPHRRKFDGGVDVAVNFTGGDT
WVKSMRCLRRGGRLLTCGATAGYDPQTDLRFIWTFELNIRGSNGWMREDLDALLGLVQSGKMQVPIDRVLSLQDAGEALR
LIEDREVMGKVVVTP
>SEQF1086_CAE41084.1 putative acetyl-CoA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRAAPANLGALFSPARDPAAIALIDLGGESGPREYTYAELDAQADGVARGLPAGARAAILSANRMEFLAAYLGIMRAGLI
AVPVNYRLPPDSIDFILRDSGAALVFCDGPRRDAYTVALPSVEFGAGGAGGYARFLDPGPCEAARPADDQPALFLYTSGS
TGRPKGVKISHAGYLWTVRQRTASTDYGGHCFLVAAPLYHMNALNTIKLALAGQGRLVLMPQFSPAGYLDAIERYRCTWL
TAIPTMIALLARETGALAGADLASVAMVRLGSEPLTQRIADSARAMFPRAAFGNGYGATETGALVFGPHPQGLAQPVLSV
GYPHPAVQLRLADGADLDAATGVLQVRSPALMLGYHGLPEQTAAAMTHDGFYITGDVMRRDEHGFHYFIGRADDMFVCGG
ENIYPGEVEKMLERHPAIAQACIVPLADPLKGMKPVALVVSRPDATLSEQEVKDYALAHGPAYQHPRAVRFVDEMPISST
GKVNRKAALLAAELIAAASPLTQGGHALRR
>SEQF1086_CAE41085.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRSKENAMEFHQCYALDYHRARDKFRAAAAAAGASLTQYLHEGRTGPDGRPLHTDVARFGRADAPRRLLAISGTHGLEGF
FGSAAQIGWMLGDGPASLDPDVAVIMVHAINPWGFAHLSRTTENNVDLNRNFIDHGQPHPANPDYAILHPQLLREDWSSA
AVAAAQQAMEDFTARHGEDRLYDTLARGQYSHPDGLNYGGTAREWSNLTLERIVRDHLAGARKVALIDWHTGIGGYGEPF
FLCFNEEGGPLHELAARWWGRDRIVGQRPHGKARPNYQGLLFHGVQALLGDVPMCGAVIEFGTRGWHMRRLLRLDLWLKF
KADPASERYAMLRADLLDSFCPYDQVWREGTLRHAQEITRQAVAGLAAWTET
>SEQF1086_CAE41086.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKSVKSFLYPLITGVVLVILWFASIRIFSVPNYLLPTPEAVLNTLRIGYVEGQYWPHFLFTLQSTVYGYLIGCGMALVV
GTVLAESETFEQFIYPYIIALQSTPKVAIAPLLLVWFGFGMASKVVMVALMSFFPMFINTVVGIRQANPAMLDLMKAFKA
SRSHVFFHVKLPAASGHIFAGLQISVVLSLIGAVVSEFISSSQGLGYLIQSASVNMDVATMFACLFSLVVIGLTGTNLIR
FLHRKLVFWEQSTTATVQPE
>SEQF1086_CAE41087.1 probable ABC transporter, ATP-binding component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTSLNLSMIEGGRPASRAAAATLDAVAGAGDGAALLTANNLSVVYRTSKGPITAVDNLSLQLGAGEFVSVLGPSGCGKST
LIKVFSGLLKPSGGKALLNGTPIDEPRGDVGIVFQQPTLLPWKTVLDNVLVPIRALGMNVAEGRAKAMELLRLVGLEKFA
SNYPSELSGGMQQRVGIARGLIHDPALLLMDEPFSALDTMTRDRMSIELQRIWMATRKSALFITHSIAEAVFLSDRIVVM
SARPGRIIREVTVNLPRPRTLATLTDPEFTRLCGELRELFDQLVQFD
>SEQF1086_CAE41088.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIGIEHLKRHARRGILAGAAAMALTAAGGAANAAEKVTFAYGINISLSNAPTLMAIGMGYFKEAGLDVQATFFQGAAVML
PQVTQKHITFGWITPDPLVISRQPGRDALPVKMFYNGIYLSPFEVVVTKSSPARSLADLKGKKIGVGAMSWGNLAVTKAM
MKKLGLELQRDYEFVPVGVGATAFRALADDKVQALNLFDTFHVQMEQMGADLRRLPMDQSYRELFSSGWIAHQDTLRERP
ELVVAFARAAAKGVVACNANPQACVQNFWKLYPATKPADGTEEKKLADAVQILKVRLATMLPEQGPQQMGYYTEQSWHDY
VDVLHEGGQLSTKDVDVKPLYTNQFVKDINDFDAAAVVSAAKQLK
>SEQF1086_CAE41089.1 putative dioxygenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRTEPDQPMGAAPAGLDHVGLYAHDMDAAAAMYQRLGFTLTPLSQHSGTHAVTREVVKAGIANRCAMLGHGYIELVAVV
DPALDLRGIPEGLARYAGMHIVAFDTPDPGQRIAALREAGFAAEPGVLQRYIDTADGPRLARFSQVRTPRQAMPEGLILT
LRHETPELLWQARYMDHPNGARALAAAIVAVEDVDAAAARYARYLGVPAERRGGEAWFTLRSGRLALVDQAALAARLPGS
AAPTLPFPAALAVEVDNLSRTAAVLDDNQVAYRRAGGQLTVAARDAGGAAVIFCANAEAAFAGAPEEP
>SEQF1086_CAE41090.1 putative acetolactate synthase large subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQLNGAEAMVRMLQLNGVKHIFGLCGDTSLPFCDALQRLDHGMEHILTRDERSAAYMADAYARVTGKVGVCEGPSGGGA
TYLLPGLVEANESSVAVLGITSDVSVGSRGKYPLTELDQEALYRPLTKWNTTIDRADQIPGAVRAAFRAMTTGRPGTAHL
CLPYDVQKHEVDPADVWAQPGHDRFPAMRFAPDPAAIEQAAARLVGARAPVILCGGGVVISGACAALEELAVTLNAPVCT
TVSGQGSLADTHPLNAGVVGSNGGILATRAVLADADVVLLIGCRAGSTSTEHWRFPSREVPILHIDSDPMVIAANYRTDV
AMVGDALLALQALNREVHARIDARPTDAVDGKAVAAKAKGAKLAALQPLAASLDAPIRPERVVDALNRLLPAESVVVADP
GTPCPYFSAYFEASKPGRHFITNRAHGALGFSMAAGMGAAIGRPSAKVVSVMGDGSFGFTVGEMETIVRRKVPLLMIVLS
NSVYGWIKASQKAGYQERYFSVDFNRTDHARVAEAYGVKAWRVEDPRELDGVLKAAIEYGGPALVDIIVQPLQEAAAPVS
QWMG
>SEQF1086_CAE41091.1 putative mechanosensitive channel protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIPGSRIAWLLWPTVLCSLSVVVYVFHAYLFQRYLPGSNPESFRRFSAAAAFYAFAWLLARMAAAALTRKAKKKRKTPRL
LRELVSATLFAIATVATIGVFLGQSAGGILASSGLIIAILGFAIRNVLADVLSGIAIGVEAPYRIGDWVGFDATIRGRVT
EIGWRTTRILTPNDTYMILPNSQISRQMLTNYSAPRKQYQGELEIVLSHDISISDGKQLLFDAALSTSPAESLAPGQKPR
VRATAYTAEGVTYKIKYWVPQFSDSTDCRDAILVAIDDAIRSQGLALPVATPPRPQAIALRQPDTPDNPGA
>SEQF1086_CAE41092.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41094.1 acetolactate synthase large subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MELNGADIVVRCLAEEGVEHVFGYPGGAVLYIYDAIFKQDKFQHILVRHEQAAVHAADAYSRASQKVGVCLVTSGPGVTN
AVTGIATAYMDSIPMVIISGQVPTAAIGEDAFQECDTVGITRPCVKHNFLVRDVKDLAETMRRAFFIARTGRPGPVLVDI
PKDITVAQCKYAPPKGEISMRSYAPVNKGHQGQIKKAVQMLLHAERPMIYTGGGVILSDAAEALRHLVDQTGAPCTNTLM
GLGAMPATDHRFLGMPGMHGTYEANMAMQHCDVLLAIGARFDDRVIGNPRHFAQNARKIIHIDIDPSSISKRVRVDVPIV
GNVKDVLADLSAQYDLARADAKPAPIEKWWQQIEAWRGKECLKYAGSDEVIKPQFVVEKLWEVTGGDAFVTSDVGQHQMW
AAQYYKFNKPRRWINSGGLGTMGVGLPYAMGVQMANPGADIAVITGEASIQMNIQELSTCHQYHLTPKIICLNNRFLGMV
RQWQQIDYGSRYSESYMDSLPDFVKVAEAYGHVGLRIERPADVEPALREAFKKHKDRLVFLDFITDRTENVWPMVKAGRG
LTEMLLGSEDL
>SEQF1086_CAE41095.1 acetolactate synthase small subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKHVISVLMENEPGALSRVVGLFSARGYNIETLTVAPTEDATLSRLTVVTVGSDEVIEQITKHLNRLVDVVKVVDLTEGA
HIERELMLIKVRAVGKEREEMKRMADIFRGRIIDVTDKSYTIELTGVQEKIQAFIEALDRSAILETVRTGVSGIGRGERI
LKI
>SEQF1086_CAE41096.1 ketol-acid reductoisomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKVFYDKDCDLSLVKGKTVAIIGYGSQGHAHALNLHDSGVKVVVGLRKGGASWNKAANAGLEVAEVAEAVKRADIVMMLL
PDENIAAVYRDEVHANIKAGAALAFAHGFNVHYGQVVPREDIDVIMAAPKAPGHTVRSTYSQGGGVPHLIAVYQDKSGSA
RDVALSYASANGGGRAGIIETNFREETETDLFGEQAVLCGGTVELIKAGFDTLVEAGYAPEMAYFECLHELKLIVDLIYE
GGIANMNYSISNNAEFGEYETGPKVVTDATRQAMRECLTAIQTGEYAKKFILENAAGAPTLTSRRRINAESQIEQVGGKL
RAMMPWIAANKLVDKAKN
>SEQF1086_CAE41097.1 putative CDP-diacylglycerol--serine O-phosphatidyltransferase protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPNFSMRDPENRHRSIYLLPNAFTTAALFAGFYAVVQAMNDRFETAAIAIFVAMVLDGMDGRVARLTNTQSAFGEQYDSL
SDMTSFGVAPALVIYEWILQDLGRWGWLAAFVYVAGAALRLARFNTNIAVVDKRFFQGLPSPAAAALVAGFVWLAIDNKL
PIHDSIMAWVAFVLTMYAGVAMVSNASFFSGKNFALGRSVPFWGILLVVAVFVFVSSDPPVVLFGLFVLYGLSGWVVMAW
RWNRARRLQQERRSGHHSP
>SEQF1086_CAE41098.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPPIRRPIGRALRLAGAGMLLAALAACANLNQVPPGTPLADVQAQFGAPNFACDLPNGGQRVIWTQQPYGQFAWGANVGP
DGRVDRVVEVLTDEHFKVLGTGTWTADQVRCEFGPPAEIKQVGLPSVRQVVWSYRYRESRVWNSLMYVYMGREGDRVTRF
HPGPDPMYDEDWRWH
>SEQF1086_CAE41099.1 30S ribosomal protein S15 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSVADIKKSEIVAQFQRAQGDTGSPEVQVALLTARINELTGHFKEHMKDHHSRRGLLRMVSRRRKLLDYLKGRNPDSYRA
LIEKLGLRK
>SEQF1086_CAE41100.1 polyribonucleotide nucleotidyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFNKVTKTFQYGQHSVVLETGEMARQASGAVLVSVEDTVVLATVVAAKKAKAGQDFFPLTVDYIEKTYAAGRIPGGFFKR
EGKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVVIHTLSVNPDIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQ
YVLNPTATQLKSSKMDLVVAGTENAVLMVESEAKQLSEEIMLGGVVFGHEQMQAAINAIHDLVRDAGKPDWDWQPAPKNE
ALIAAVSAAAQEGLNAAYQIREKQARTTKLREVYAAVQAAMAEQAAQAGQPAPDSVGVDNILFDLEARIVRSQILNGEPR
IDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGV
PKRREIGHGRLAKRALLPLLPAPEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPTNDHVAGVAMGLILDSGKF
AVLTDILGDEDHLGDMDFKVAGTETGITALQMDIKIQGITKEIMQVALAQAREGRLHILGKMRDALEGSRTELSAFAPRM
LTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTIVIASVDETQAKEAQRRIVELTADVEVGQIYDGSVLRLLDF
GAIVQVLPGRDGLLHISEIANYRIANINDVLKVGQPVRVKVIEADDKGRLRLSIKAIGGIEQQQSGTAEPAAQSEPQAE
>SEQF1086_CAE41101.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTSRRLAALSGWAASVLLAGCIAPGGSGGPRGESMSADQFMQTDFNRTVTLEIRDNLASLDTLLDKLYRRNPREWRKSGV
ADQAAAVARVKRLIEERRPPAGLAGLRDIQVLAVSLDPAYGGDRVAAFVYGLADTLIAAHNDKTRIYLSDVLDGQRIYNA
ARNVEAAAWLLASRRTAQGEPLLLANEMSAAATNLSFEREFGAIIGRLDLIANLLGENSRRIGINYAQGLLFFNFLPVR
>SEQF1086_CAE41102.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE41103.1 threonine dehydratase catabolic [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIDLAAIQTARDILRGQVLNTPFTHSRTLSDILGAEIWLKFENLQFTASFKERGALNRMLNLTEAERAAGVIAVSAGNHA
QGVAYHAQRMGVPAVIVMPRFTPTVKVANTRRFGAEVVLAGDTFDDAKARGYELARERGLVMIHPYDDPAVIAGQGTVAL
EMLQARPDLDAIVVGIGGGGLIAGIATAAKAIKPDIEIIGVQTERFPSMYAAVKGVAMESGHYTIAEGIAVKSPGTLTQE
IVTRLVDHIELVNESDIEHAIVVLLEIEKTVVEGAGAAGLAALLRLQERRDERFRGKRLGLVLTGGNIDPLMLGELIERG
MVRAGRLARIRVDLRDLPGALAQATKLIADAHANITEVHHQRAFTTLPVRNVEVDFVLQTRGHDHIQEVIAVLNAAGFAA
SNHDH
>SEQF1086_CAE41104.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPYLNLIPNPAPPFVVLDACVLMSGIARQLLLRVARTGVFQPVWTERIGEEWRRNAARLWDIPAAALAAQWEATNASFPR
ALEVDTQPYETGLRYSDPKDFHVIAAGLARRARCGLPQAPATLVMTWNLKDFNRSELRRQGLDAFSPDHLLARWWQADPA
ALRDALATVADDYVALGREPLPLAAILQRERLYRLRRLADADQ
>SEQF1086_CAE41105.1 probable zinc-binding dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRAVEITRPGGPEVLVPTERSVPEPASGEVLIKVSAAGVNRPDVLQRKGNYAPPPGASDLPGLEVAGEIVGGDAAAGGFA
IGDKVCALVAGGGYAEYVVAPAPQCLPIPRGLTEIEAAGLPETYFTVWSNVFDRGRLAAGEALLVHGGASGIGTTAIQLA
RAMGNKVYATVGSDERARAVEALGAALGINYKTQDYVKEVLDATGGAGVDVVLDMVAGEYIGRNLKCLADDGRIVIIALL
GGAHANVDCNQVLRRRLTITGSTLRPRPVEFKGEIARALRERVWPLLENGTLKPVVHATLPLEQAAAAHAMMEAGENIGK
IILTV
>SEQF1086_CAE41106.1 triosephosphate isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTAENRARLVLGNWKMHGNLAENAALLAELRAADAAAHCEMGVCVPFPYLAQTAAALQGSAIGWGAQDVSAHAKGAYTG
EVAAPMLAEFGCRWVLVGHSERRTLHAESDQLVADKARAALEAGLTPVVCVGESLQEREGGNTLGVIERQLEPVLALGRD
ALVRMVLAYEPVWAIGTGRTASPEQAQEVHSAIRVALDGLQASQVRVLYGGSVKGANAASLFAMPDIDGGLVGGASLVAE
EFLRIAAA
>SEQF1086_CAE41107.1 protein-export membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLMLTVLLVVQVVSALAIIVLVLLQQGKGADMGSAFGSGSAGSLFGATGAANFLSRTTKWAAVVFFVSTAGLAYVTHKG
PSGPAIDSGVMQNFPQDRSVPQAPGSAPAGSGSSVPQAPGSGVPAAPAQPDASVPQAPWRFCPWAFTC
>SEQF1086_CAE41108.1 high-affinity choline transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSITPPDDEGAEPGPSSQAPHAQAAALRRPIERSRFGGSQRRPERQDGDDAPVSRSDLSKGPEEVLERRTASINWRVLLV
SSAVIVAFSVWAILVPGDARMRMKTAVDWIAANLGWYYVLTMTLVIGFVLWVAFSKEGDVRLGPDHSRPQYRLSTWVAML
FAAGVGIDMLFFSVTGPVVQYLHSPSGEGGTAAAMQDAVVWTMFHYGVAGWSMYALLGMAMGYFAYRWGMPLSIRAALYP
LLGKRVRGPLGDGISIIALVGTVFGVATSMGIGVVLLNVGFSLIFGLEQGLSLQIALVVGAVILTIGATTSGVDRGIRWI
SELNLWSAVAMMVYILLTGQTAFLLNALSENIGRFLVTFPARTLQTFAYEPGGPEWMGGWTLFFWAFWLAWGPFVGVFLA
RISRGWTLREFVIAAITAPVLCDFIIVSLFGNSALYHVLQGDTAFAALAVESSERGWYALLAMFPGAMFLIGLATLSGLL
FYLTSANSGAMVMSNFSASIPDPSHDGPKWLRIFWAVLTAVLTVAMLLAGGVTTMEYATLIFALPVTIIAYTVMASFYKV
LRMERAEREGQVLRRPSMAPMGGHLPERSWKQRLEQLHAFASLRQATQFLDHTVRPALGDVAAEFRNQGYEVASESLASE
RGIEEPLLRVSMDGFRAFQYHVAVVEAPVPMFSGRMSRETDVYYRLEVFTQTGSGGYDLMGLTRQQVIDDVLERFEAHLA
FLTFSTNTDTASVLTPPAPARNP
>SEQF1086_CAE41109.1 probable transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MENERGTVERIVRLIAFLASQDDDVGVKDIADELQLPHSTAHRLLQQLVALNLMQRVQGARRYAFGPEMYRLGAMISNKV
NVVQLASAPLHRIVAYTNESCALALYRDQDATLVFAKQVESANQLRYQLDLYRPVSVLWGASGHAVLAHLPPERVRTLLK
KEPLSPTGLAALPARELNRDLKQIREQGYSVSTRGEKIEGAAGISTPIFGTGGHVIGCFSLFIPRIRYPEHRETELAQLL
VREAGALSDVLAGRQAAPAGAPGAAR
>SEQF1086_CAE41110.1 methylaspartate ammonia-lyase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRVQRLLATDGIGGYYWRDQEAIGQGAPRDGFLYRGAPVTPGFTSIIQVSSTVLLTGVADDGSELYGDCATVNHAFRSGR
QQAPDAASLIAQAEGPLSRWLAQCDLSSFRDAAAQLDTMRLDGQPLHMALRYGLSQLLLQAVAAHHRVTMAEILAREYGL
TLADTPCDLLGSCGGNWYENVDKAIVRELPYFPQTAMVRTDQLDELPAYAEWISQRIRAVGRPDFFPTLHYDLHGLLSQR
VGDDLDAALVYLRKVEAASAPYPVLFEDPLDAGERGAQIALMGRLREALRRAGSGIRLIADEWCNTREDVREFVAQGCCD
LIQIKMPDLGGVDNTVQACLICRDGGVGVYLGGSCNETDISARVAAHVALAVRPVEFLGKPGLGLDEGVMIVTNEMQRAI
RSYRTRLSAA
>SEQF1086_CAE41111.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRWQQWIIAALGCGAACLGIATSALAAPAGYPKGPVTLVVPTGPGGGTDLAARAFSERLSAILGQPVVVDNRAGAGGII
GTQDVAKSRPDGHTLLISSNQFGILPAVQDNLPFDPVKDFIPVTSIGLIPTLVLVNPSLPVRSVAELIDYARKQPGGVQY
ASAGIGSPNHLFAAMFGSMADVPMMHVPFRGTSPALVAVAGGQTAVAFASQPASQSFVAAGKLRAIAVTSARRLPSLPDL
PPVSDTVPGYDADIWLGVWAVAGTPDTVVDAIHAAFEEALKDPRVIDSLGKMGIVVATRSRQDFTAMVEREIGKWARVVA
EAGDGFQKQ
>SEQF1086_CAE41112.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQLASPSPAVGVTRPLADAIVATASSRLGAATLQTAQACLLDSLAVTLAGAQEPLVAVLDRTLAGFGGAGQATLIGRGRR
APLPDAALVNGAAGHAFDFDDMHIESAMHPSVPVVAAALAVAEHEGADGAALLRALALGIEAQLRIGEAVRPHHYQRGWH
ATGTLGHFGAAVAAGCLLGLDAQQTTMALGIAGTQASGPKETFGTMSKPLHAGQAARNGVMAALLARQGYTSTEDILDGH
YGFGRVCGDGAHWDGLLDGWGERWSMHDILYKPHASSFCTQALIECALALRATPGFAWTAVARIHGEVSAMSMANARIVE
PRDGMQAKFSLSHAIAQGLVHGQATIADFSDARAREPALRALRARTTIAQGAGLAWPEAIVTVTLADGSQLRRHADLRAS
TATSQDKWRVTLGKFMSVAGAVPGFASCDAVRDAVLRLPEAPGAVAALMALLRPQAATPSGA
>SEQF1086_CAE41114.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADLFSVLRIAYTLALGAALAAPAAVAAPFPDRPVRLVVPYPPGGGADIFARTLSEPLAAQLGQPVIVENRPGANGIIGT
DAVARAAPDGYTILLGNSGPNAINQAIYPDLPYDAVDSFEEVSLIGYTTHVLVVHPGVQARSVTELIALARRSPGQLNFA
STGQGGTPHLAGELFKLMTGTDMVHVPYKGASPSNADVIAGQVQLTFNTLPPLMTSIRAGKVRALAVTGKQRSQLLPEVP
TIDEAGVAGYDVQTWYGIHAPAGTPAAVVDRLNQALVAVLSNAQVRAALVGQGYEVATSTPGEFSRMVRDDVAKWRKVVK
EAKVKVD
>SEQF1086_CAE41115.1 transposase for IS1663 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF1086_CAE41116.1 probable short-chain dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDLGIAGRWALVCGASKGLGYGCASALLQNGVNVVINARNDGVLQDAASALRKDAENQARQSGGQAGKVIAVACDITTEP
GRQAALEAPGGPGPDFDIVVTNAGGPPPGQYQDWDRDDWIKAIDANMLTPIALIKATVDGMQARGFGRIVNITSTAVKAP
ISTLGLSNGARSGLTGFIAGLARSEIAARGVTINNILPGRFDTDRLKSTMRVAAQACGQSIEALREEQQLGIPAGRFGRP
DEFGALCAFLCSVHAGYITGQNMLIDGGAYPGTY
>SEQF1086_CAE41117.1 probable LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRHLDMQQLRTLVTIAQTGSFSATAEKLFKTQPAITHQMHQLEATLGTALFEKQGRSRVLTEDGQKMLKYASQVLALNDE
VFRVFQERLQGTLRIGSPHDAVETLLPSILRQASQALPQLNIDVCIDSAPRLFELLQRGEIDMAISARFHQEFEGLILKR
SPVVWLCAADYVHRPDKALPLILADGSSIYREMALAALEQHHIRWTVTRIVPDLVGIKAAIRAGLGVTPRSIDLLAPDMR
MLDEADGLPPLPEMTYHLWIRPHADDSPARQAYEMLRQAWELVDAVPAARAGPAAG
>SEQF1086_CAE41118.1 cystathionine beta-lyase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKFDTLLTHGGRDPKAHKGMVNTPVYRTSTVVFESMAEYKATRGAKFDHVRYGRLGTHTVKELENLVAAIEGGHRAVLTP
SGVSAIATTLNTLARPGSHILVPDNVYYPCREFCEKVLAPRGVRVEYYAGSEVERLVRPDTSVVYCESPGSLTMEMQDFA
RIAAAAHAVGAKVVADNTWATPVFLQPFEHGIDVSIHAATKYLVGHSDVMMGTVTAHDPELWLAIRTEAAAQGLSISPDD
AYLATRGIRTLGVRMAAHYRNALDVAQWLAGHPRVAQVLYPALPQHPDHALWRRQMRGASGLLTLELEPCSLEQRDAFID
RLTLFAIGASWGGYESLVLPADTAGKRSLAGRDYAGPLVRLHIGLEDVEDLKRDLDQALRRED
>SEQF1086_CAE41119.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKIQDLLSGMQPGTVAHDYLPVGTMSSGMAIAIPVTVIKGAAPGPCLWVNGQVHGNELNGVIAAVELGRRVDPAALSGS
LVITPTANPLGLDNRTKTAPQDLQDLDQTFPGNPQGMVTNHMAHALFQEVRAVASCLVNMHTMGSIHDSKPYCVYKVFPG
SAVTEAQLLRMTSFFEPSVSCRMDVGGAGELPGNIAGGLDYQCLAIDVPAFMVELGQGSWYTPENVEQALTGLLRLASHL
GLIDESGVSAGAPAPASVRRVTRRRWVMARHGGLFLAAGRAGQIVPAGAPLGRIVDLHGAEVEAVSLDTDCIVIGMRRDP
VVHTGDRVAFVATQWDQADIGAG
>SEQF1086_CAE41120.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQHTLAKYLAAAVAVLPWTAGAQDKAAKPWQPDGPVTLILGYGAGGGHYALAQVLQARMAEELGQPLIVMPKPGAGGLIA
TDFVANARPDGRTITWSGPGVLTIWPQLRQISYDPKKLTPVNLLVQMGYMLVTKPGESRWNSVQDVIDGSKSGDVTYSSV
GVGTSNSMTGHLLNAMTGSRLREIGYKGGGPALMSTMAGETDIGFGDTATHKLIAAGRLRAIATTTRQREPRFPDVPTVA
ETVPGYEVTNWLGVIAPPGTPQPIVDRYQQIFAKLMAEPEIAKRVKELGMTPDVGTPQAFSELIDSETQLWKRLIRDQNI
KVE
>SEQF1086_CAE41121.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTMQQRYDAVKDAMAQIGRLAAQLDGEALREAIGPVLVALGERDELFPRDEFPIRAGKPGGLYQLWRGESGDLALYASA
GKTGKKQPPHDHTTWAVIAGVYGEEHNVFFERTDDGSRAGFGTLRQIDALTVVQGNAARLSGEVFHTIEVVSEEDSLHLH
LYGRALDTLSGRINFATEEGGAYTRFMAVPETYAPWIAPRDLYEMLTDGGELAILDVRENGVYTQGHLFHAASMPLSVFE
LRVDDGLPSPHVRIVVIDDADGLAEQAVRLLHQRGYHNVAVLQGGQPGWNAAGLPVYTGVFVPSKAFGEVAEHVYGTPSI
SAVELDALRRSEEVLVLDSRTEQEFNLMSVPGAYSCPGAELVARALDHAGPIVVNCAGRTRSIIGAQSLRNAGKTDVRAL
ENGTMGQHLAGLPLERGKSASYLDRPVAAGAAQAAQAWALGMSIATLDAGELHDMLSNPYRTTYLFDARDPSCSSRATLP
RAVAAPGGQLVQQTDYYAPVRNARIVVFDTDGVQAPMTAGWLHQMGWEVYLHRPEATALVAPPRVEYDDERGVPVEAVAA
DAVIIDVGDSRTYRAGHLAGAAWAPRSRLPALLAQRKPAGPLLFTCADGRVSRLAAADAAAQGYQAAYLKGGTAALGADR
LRGDAPQFLTEAIDVWYRPYDRETGIEEAMHQYLSWETGLLDKVRSDPTVAFRI
>SEQF1086_CAE41122.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNNQRRNALRVLTGLCGAAALPRLALAQAGAYPAGPVTVVVPYGSGGSTDVIARLLVNDVSERLGGKFIVENKPGAAGNI
GTRQVGISRPDGTTLLYSTATPFCINPYVYRTLPFDPDKDFAAVSRTAKLPLVLVVNAGLGIKTPQAFIDYLRKNQQQCS
YSSYGIGTSSHIASAIFTKKIGAPGVLHVPYKDMTAMSDLAAGRNTFHIDAWSVVDPLVRAGKLTALAVSSAEPLPWAPK
LPTIASVIGSDYEVVTWHAVFAPRKTPAEIVQKLNHEFRQTIAKPSVQKTYVDQGFLTYPPATPAEIDAFVQQDKQRWKS
FVEAAGITPS
>SEQF1086_CAE41123.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAASRDIFAPDFRRRPYWWEGYEPPECGEDTLPASADVAIVGGGYTGVCCALALREAGIEAVVLEAGRPGEGASTRSGGQ
VSGGVNVQKKALAAVGESAGQRAERLAARLRDAAASMAYVESLIERYAIECGWRRTGRLTTMWVPAHYQSWQARLDQLNA
CTGSQARMIPREELAAEIGSSVYHGAALIEHAGHLQPAQLYGGMLRAARDAGARVLGRTPVERIERRAGGYDVHTARGTV
RAGQVVIATIGYTGANLGGLKRRIVPVCTHMIATEALPPDLAASLLPTNRAVSESRRVVNHYRLSPDGRRLLFGGRARFV
PTDEATTARLLYRAMLKRFPQLAGTRITHSWGGNVAMTLDSMPHIGGADGLHYALGCNGSGVAMMSYLGHCVGRKIATQS
GEPINAFDMGEIPGHPFYFGNPWFLFAIGSWYQARDAYDHWRAR
>SEQF1086_CAE41124.1 hydantoin utilization protein B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTVDNFRLQVLANHCTAAAEAMGYTLMRTAYSTFVKETEDFSAQLMTPAGKTFASPKTFGATWYTGLDYGRVIAMFDDYR
EGDIYLTNDPYSGFVATHTPDMHVWKPVFRDGRLVCFVGSHIHNTDMGGAVPASLSRTLTEVHQEGLRIPPMLLARDGVI
DEKVLRIMEVNVRMPEQNRGDLNAQIAALNVGERKVHEIIDRFGVDEFMQGAEAILDYAEQQTRALIREIPDGEYRFAEY
ADEDTVGGYPCRIQITLRVRGDELELDFTGSDPQVASSLNVPTGGDGHHSVITVGLIYVMHTLAPRNVLNAGSVRPCRAV
LPEGTVVNPQAPAAVGMRSLMAAVIQACTFGVFSRAMPDRLPACPAGGSTLLNVKTATREGRQVLSSIGPCGGGAGGGPE
HDGVEGCGANNAFLKNTPVEINEAEVPIEIIRYGLVPDTGGAGRQRGGNAATMEFRLLAPNGVVTARNRNRSELAAWGVM
GGKAGANSRFIRNPDSDAPEELRNSDLVNCAPGDVIRLQGPAGGGYGHPYERPIEQVVEDVRCGFVSRQRAREAYGVAVR
ADLSVDEAATRELRRADRGGQAHFDHGPGRSRFEAVWTPARYDAMTRIMAALPISWRHFVKHQMFAALAGSAPPQDGGAQ
DIERLYAQLSQRYADLPSPQAIAAASGAAA
>SEQF1086_CAE41125.1 hydantoin utilization protein A [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRDIDGGTMGYRVGVDIGGSFTDFAVFDEDNGEIKSLKVFSRPDQPGEEVIAGVRMLGERYGIQPEQITYFTHGTTVGIN
TVIQRKGLKLALFTTENFSDVLELARLKTPDMYHLLSRRPAPLVKRSMVFGIAERMGPDGTVRAPLDEASVERAVRQALD
AGAEGIVVSLLHAYRNPAHELRVREIAEALAPGLPVSCSSETWPIIREYERTITAVIGGYVQPRVAHYLTSLQQALKNAG
VQPEPRLTKSNGGVMTAEQGKRDCVQMILSGTAAGVIGASHVAATAGLPRCLSLDIGGTSADIAVIVDGKPQYGVGELIG
DFQIYIPSVSVSSVGEGGGSIAWVDPLGVLKVGPESAGSHPGPACYRRGGTRATITDAFVCCGLVGHSELGYQAVTVDAD
ASRQAVGELADRLGRGIEETAEAIIQIAVSGMYSEVSGLVSRYGIDPREYAVLAFGGAGPMLGCFLARELKVREIVVPPS
PGTLSALGGLIADLKSDFLKTVYTDLSADRLAFVCDEFATLAGRARQWLAQEQGHAEEAELVYSAEMRYRGQSYEIDTVL
DPIHIEAGDVQAVGQAFHDMHRRLYGHADEQAPVQIVSLRVVIAGNNDKPAFPRHALRPGAPRAERKVRVWLDGAWHEVP
LYARTALAAGQQFTGPAIVTQDDCTTVIPPDYACRVDEYANLRITEGAAS
>SEQF1086_CAE41126.1 putative transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNDNRSVQRCLALLRSFRSGPGQSLTALSKAVDLPHSTVLRFLTTLESEGYVRKEGTLWSLTPQLLEIGFAALANTGVND
VIQSALQELADQCAGTANIGERSKNDVIIIARASSEAERRKILVVNLRVGNALPPASALCSALDLPEDQWAIARYPERKV
TTVGVALFSSQARGLSLGLSVNDDDYDMPRIEAEVLPRLRAQRDHIRRLMSLGEM
>SEQF1086_CAE41127.1 azurin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFKQVLGGMALMAAFSAPVLAAECSVDIAGTDQMQFDKKAIEVSKSCKQFTVNLKHTGKLPRNVMGHNWVLTKTADMQAV
EKDGIAAGLDNQYLKAGDTRVLAHTKVLGGGESDSVTFDVAKLAAGDDYTFFCSFPGHGALMKGTLKLVD
>SEQF1086_CAE41128.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDQSASVSTHWVPHQPAERILMTLKTRGPQGIAAIAEVLDVTAEAVRQQMARLQVEGLVDAETRSAGRGRPTQIWRLTQ
AGHARFPDMHAEMTVQMLGAVRQVFGESGIDKLIGAREASMRASYAEAMQGADGLRERLERLVAVRSREGYMAELVATDD
GYLLVENHCPICAAAQACMAFCRSELDLFREIIGPQARVERAEHILAGARRCAYTVRPLRQAA
>SEQF1086_CAE41129.1 outer membrane component of multidrug efflux system [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTHPVPTTFARTAGALLAALALAGCAVGPQYQAPTPAPVKLASPEQALFSADRLQREWWRQLQDARLDALIGLALARNLD
IGLALARNLDIRQAQARLREARAALDEKELDRWPTVTAAGGYTRSLSQINPGPDQRNLAQSYRAGFDATWEIDLFGRLQR
RAEAAAARDQAAAADLAQTRLVVVAELARNYFEMRGAEQRLAVARANLATQQETLRVTAALVETGRGYAGDLASARAELA
GTRALLAPLETQRRLAQYHIAVLAAMRPAELGELRQEQPLAPLAAQLPIGDVAMLLQRRPDVRAAERLLAATNADVGAIT
AELYPRIDLGGFLGFIALRGGDLGQASSKAFALAPTISWPALHLGSVQAQLRAGQARHDAARARYEQVALQAIEEVEGAL
TRYGQNQQRLRDLLDSATQSQRAADLAQTRYREGAAPYLTVLDAQRTLLRAQDAVAQSESESYTSLVALYKALGGGWNTD
AAAPARSARTAALPASP
>SEQF1086_CAE41130.1 integral membrane component of multidrug efflux system [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTFTDLFVRRPVLALVVSTLILLLGLRATGELPVRQYPLTENTTITITTQYPGASPELMQGFVTQPIAQAVATVENIDYL
SSSSTQGRSLITVRMKLNADSNKALTEIMAKVNQVKYRLPQEIYDPVLAKSSGEATSVAYVGFSSKTMPIPALTDYLQRV
VLPQLSSIDGVASVDLYGGQTLAMRVWLDPARMAARGISAGEIAQALRDNNVQAAPGQTKGLYVVSNIQVNTDLNSLTDF
RDMVVRQVDGAIVRLGDVGTVELGAASYDSSARMDGEKAVYFGLNATPVGNPLTIVERINALLPGIKQNLPPGVEVQVPF
ELARFINASIDEVRNTQLEAVLIVVAVIFLCLGSLRAVLVPVVTIPLSMLGAAAIMLSLGFSINLLTLLAMVLAIGLVVD
DAIVVVENVHRHIEEGKSPVHAALVGAREVAGPVIAMTLTLAAVYAPIGLMGGLTGSLFKEFAFTLAAAVGVSGVIALTL
SPVMSSFLLNSRVSEGWMARKAEHFFQRLGDAYGRVLDVSLRHRWVTGLIAVVVLANLPVLYGSAQRELAPAEDQAMILT
AVKSPQHANIDYVEKFGQKWDTVMQEIPEQNGRWLINGSDGVANSIGGVNLVTWQARKRSADEIQGDLQNRVNAIEGSNT
FAFQLPSLPGSTGGLPVQMVLMSAADYRVVYDAMETLKHAARASGLFMVVDSDLDYNNPVVRVDIDRAKANSLGVTMKAI
GDTLAVLVGENYVNRFGMDGRSYDVIPQSPRGMRLTPQSLGQFYVKSASGAQVPLATLVKISMGVEPNRLTQFDQLNSAT
FQAIPMPGVTMGDAMQFLTEQARLLPPGFSHDWQSDARQYSQEGSALVVTFLFAIIVIYLVLAAQYESLRDPLIILVSVP
MSICGALIPLALGMATINIYTQIGLVTLIGLISKHGILMVEFANEMQAHAGLDRRAAMERAARIRLRPILMTTAAMVVGL
VPLLFASGAGAHSRFSLGLVIVVGMLVGTLFTLFVLPTMYTLLARDHRAAGQSARARELARLDAQAGAASPAHETAS
>SEQF1086_CAE41131.1 probable HlyD-family secretion protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKSKKGTLAAGIVAAVAIAGGAWLYLRDAGSAPAWTMAPVKVAAAPAALGPLPVTLAGIGTLQASRQVVIPAEVDGRIAR
IAFESGQAVRAGQVLAQLNDAPEQGDLARLQAQLRNARSVLERTRRLVPQQAATAEQLDQARAAYDQAAGEVRRVQALVE
QKQVKAPFDGVLGVRRVDLGQFVRAGEPVVSLTDARTMYADITLPEQALRDIRTGQAVSVGVDAYPGRAFDGVVSTIEPQ
VSAQARTLLVCATLPNPDGVLAPGMYVNARVALPERPGVITVPETAVSYSAYGDSVYVVDDTVRPATVRQVFLKTAERVD
SRIVVTEGLQAGQRVVTSGQLRLHNGAAVEVFGQDTLAAGGGTALASH
>SEQF1086_CAE41132.1 putative transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAGKRSYEDGCAGAHALDLVGERWALLVVRELLLGPKRFTDLRKGLPGISPNVLTQRLTELEAVAVLRRRKLDPPAGAWV
YELTDWGRELEPVILQLGKWGARSPALPREAGLSVDSLVLSFRAMFDPRAAARLTATYELVLNGQHFWARVENGQIALLR
GRPPARPDATIEASPNALAALVYDDGDLDAAVAAEQLRYSGPRAGIARFLGLFTLPEPAAQD
>SEQF1086_CAE41133.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE41134.1 high-affinity choline transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQNELKPTINKPVFLTSALFILLLVVFTIAAPATAQDFFNVIQAWILGNASWFYILTVAIILLAVIFVAVSRYGNIKLGP
DHSEPDYRDITWFAMLFSTGMGIGLMFFGVAEPVMHFIDPPVGEGGTALAAREAMKITFFHWGLHAWAIYASVALVLAFF
CFRHGLPLTLRSALYPLIGERIYGPIGHAVDIFAIIGTVFGVATSLGLGVAQINSGLNHLFGVPVGIPTQIILIVISCGL
ATISVASGLDRGIRILSETNLLLAVVLLLFVLVLGPTVFLLQTFVQNTGAYLSDIVNKTFNLYAYEPTDWIGGWTLFYWG
WWIAWSPFVGLFIARISRGRTIRQFVGGVLLVPAGFTLFWMTVFGDAAIHAILVEGMGSLAETVKADSSLALFAFLEHLP
WGSVTSVVAIVMVVVFFVTSADSGALVVDQLASGGAESTPVWQRIFWSTLMGVVAIALLLADGLQALQTATIASALPFSI
ILLLALWGLFKALRLDATKRSLLHRTITRTQPVRGQNWEHRLRNIVMMPRRAHVLRFISDVVRPAMDDVAEALRKEAYEA
QVVDGEEGEVRLEVSHGVYLDFSYAVYPRSEVRPSLTPQEANDEEERRYFRAEVHLREGGQDYDIMGWTRDEVIGDILDQ
YERHRHYLHVVH
>SEQF1086_CAE41135.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLKQLEAFYWAATCASFAVAADRLHLSLSSLSKRIAELESALGLDLFDRSGHRAVLTAAGERLLPQARDLLASADRIRA
SLRAEPELGVRCRFGVGELSALTWLPRLIGRVRGRYPGLALEPYVDVGQVLKRKVAEGELDFAVVAGASSHSAIASAPVG
QAHFAWVAAPSVAGAAQSLTPQLLAGTALVSLPDGAGTTRLLDPWLAGGAPAGPRLAGCPERALRGTPRLRYL
>SEQF1086_CAE41137.1 probable DNA repair exonuclease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMRVLHISDTHFGTEREPVVHALHALADTLRPDLVVLGGDITQRARRGQFAAARRFIQALQRPVLAVPGNHDIPLFNLAA
RLFDPYGNYRRALGAVLEPVYEDDRLLAIGVNSTRAARRKNGEVSRTQAQRVAQRLRDARPGQLRVVALHHPVHAMVESD
QRNLLIGREFAVPAWVDAGVDLILGGHIHLPYVAPLHGKAGEAGRRAWTVQAGTAVSRRVRGRVPNSVNLIDYAAQADSP
ACTVQRWDFQTDSGAFVLFGQQVLALNRARG
>SEQF1086_CAE41138.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPLFVNLLADVSSIDPMESYAVWIAAHPIIIFVAAPVLAAAGALLLWQLVAGLPAGRRRTMVFAVLALVAVGVFGALAAS
VEHQGGMVAFDQALARALGLSMPAALLWVLSWFTHLGDRTLLTLVAVGMTLTLLWRRRWVLAGACVAATGGAGALNWLLK
RAFQRVRPDHLHGYTLADGWSFPSGHASASMAVYGIACYLMLRTLPARWRSSALAGVAALIVAIGVSRVLLQVHFLSDVV
AGFAITAAWLALCVAVTEWALRVNARA
>SEQF1086_CAE41139.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTREITIIGLGATGSQAAHALLHAAPDVSLTLYDRQPLRCEPFRGQATLAASAAEALRESAVIVLALTDEREIDRTLERF
SDGKVGVDLQGKRVLDLCPSPPDWVRALGAAVSEAGADYRHADPREVAGERAGPQALLRLMLAR
>SEQF1086_CAE41140.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNIPAAEPRARMTLAEFHRLLADQHPFAQVLGIDVVDIGHGTARAVLPARDTHQRLGGIVAGPMLMGLADLTMYAAVVGA
TGQAGAVTANLTIHFLRKTSGAAVIADARVLKTGRLAMAEAILRCDGADEPVAHVVSAWAVPAP
>SEQF1086_CAE41142.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41143.1 outer membrane porin protein precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKKTLLAAALLAGFAGAAQAETSVTLYGIIDTGIGYNDVDFKVKGANADDSDFKYNHSRFGMINGVQNGSRWGLRGTEDL
GDGLQAVFQLESGFNSGNGNSAQDGRLFGRQATIGLQSESWGRLDFGRQTNIASKYFGSIDPFGAGFGQANIGMGMSAMN
TVRYDNMVMYQTPSYSGFQFGIGYSFSANDKDADAVNRVGFATADNVRAITTGLRYVNGPLNVALSYDQLNASNNQAQGE
VDATPRSYGLGGSYDFEVVKLALAYARTTDGWFGGQGYPVAVTLPSGDKFGGFGVNTFADGFKANSYMVGLSAPIGGASN
VFGSWQMVDPKLTGGDEKMNVFSLGYTYDLSKRTNLYAYGSYAKNFAFLEDAKSTAVGVGIRHRF
>SEQF1086_CAE41144.1 probable NADH-ubiquinone oxidoreductase chain 3 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNLHPYFPVLLFILVATLIGFALLTAGSLLGPRRPYAEKLSPYECGFEAFEDARMKFDVRYYLVAILFILFDLEIAFLFP
WAIAQGTVGLVGFWTVMVFLAVLTVGFIYEWKKGALDWE
>SEQF1086_CAE41145.1 NADH-ubiquinone oxidoreductase, 20 kDa subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAIDGILKQGFITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQSDLMIVAGTLCNKMG
PALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLLQMQNKIRLTNTIAR
>SEQF1086_CAE41146.1 respiratory-chain NADH dehydrogenase, 30 kDa subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMMTRLETLKNNLQAAFGQDLALTESLGELTLEVAAEQWFSACTKLRTDPALRFESCIDLCGVDYLTWGNGTQPEEKTGP
VTRGRYAVVVHLLSIEHNWRLRVRTWAPDDEFPMVSSLLECWPGVNWFEREAFDLYGIVFEGHPDLRRILTDYGFIGHPF
RKDFPLSGTVEMRYDPEQKRVIYQPVTIDPREITPRVVREDSYGMGR
>SEQF1086_CAE41147.1 respiratory-chain NADH dehydrogenase, 49 kDa subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTFIQALPYMDRLDYVSMMCNEHAYVM
AIEKLLGIEAPLRAQYIRVMFDEITRVLNHLMSLGSHALDVGAMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVY
RDLPDTMPQYGDSSKYRGEKEVRAMNDARSGSLLDFIEDFTNRFPSCVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALG
FTGPMLRGSGVAWDLRKTQPYEVYDLMDFDVPVGVNGDCYDRYLVRVAEMRESNRIIRQCVEWLRNNPGPVMIENHKIAP
PSRTAMKSNMEELIHHFKLFSEGFHVPPGEAYAAVEHPKGEFGIYLVADGANKPYRLKIRAPGFAHLQSLDEMARGHMIA
DAVTIIGTQDIVFGEIDR
>SEQF1086_CAE41148.1 respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLLSEQAYKKIDRELAKFPADQRQSAIMASLAIAQEEKGWLPAEILEDVANYIGVPPIAVQEVATFYNMFDVKPVGTHKI
AVCTNLPCALRDGEKAADYLKRKLGVDFRETTADGRFTLIEGECMGACGDSPVLIVNNKHMCVRMTEEKLDALVDGLKSQ
GESA
>SEQF1086_CAE41149.1 respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAPDLYKRLAQGLDPNPLNDLSISMCLHGRHIAPQIMADVDGENWRLQEYVKRGGYEALRKILTTGMTPEDVIAEVKAS
GLRGRGGAGFPTGLKWSFMPRAFPGQKYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGYNYIHGEIFE
VYERFEEALEEARAAGFLGDKLLGSDFSFQLHAFHGYGAYICGEETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINN
TETFAAVPWIIRNGGQAYLEVGKPNNGGTKLFSISGDVERPGNYEIPMGTPFSKLLELAGGMRGGRKLKAVIPGGSSAPV
LPADIMMDCTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIENGQGRP
EDLDMLDSVAGNIMGRTICALGDAAAMPVRSFIKHFRDEFAHHIEHKSCVVPQYL
>SEQF1086_CAE41150.1 NADH-ubiquinone oxidoreductase, 75 kDa subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVELTVDGNQVEVPEGSMVMHAAQKLGLYVPHFCYHKKLSIAANCRMCLVEVEKAPKALPACATPVTNGMVVHTCSEKAK
AAQKSVMEFLLINHPLDCPICDQGGECQLQDLAVGYGGSSSRYKEEKRVVFHKDLGPLVSAEEMARCIHCTRCVRFGQEI
AGVMELGMLNRGEHAEITSFVGRSIESELSGNMIDLCPVGALTSKPFRYSARTWELARRRSVSPHDSMGANLVVQVKGDC
ALRVVPFENEALNECWISDRDRFSYEGLNSDDRLAAPMIKGADGKWQEASWADALQAVAQGLSRVRESFGAGQIGALASE
YATTEEFSLLGRLVRALGSENIDFRLRQTDAGFDAALSGAPWLGMPVAELDNLDRVLVIGSFLRKDHPLMAQRLRQAAKR
GTQVLLLDAAADDPLMPVAGRLTVAPSGLASALAEVAVALAQAKGQAVPAEFAAVAAGEGAKQIAASLASGSNAAVLLGN
MAVNAPQAATLAANAQAVAQLAGAKLGFLTAGGNTVGGYLAGAVPGKGGKNAAAMLADPLKAYIVLHAEPSLDADNAPQA
LAALRGAQFAVALTPYRSAAQGWADVMLPVAPFTETSGTFVNAQGQPQSFKGTVAPFGQTRPAWKVLRVLGNVLHLAGFD
EETSETVRDAALAGGVEARLSNAISAPLGLGQPLDALERVADVPIYRTDAIVRRSEPLQAAPASRAPKARMNGRTLASLG
VSAGDKVRVSGAAGAIELEAALDEAVADRAVRVAAAFEQTAALGGAFGQISVERV
>SEQF1086_CAE41151.1 NADH-ubiquinone oxidoreductase, chain H [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEWLNVLESHGQALLGPVAWMVVWSLVKIVVIAVPIILCVAYLTYWERKMIGAMHVRLGPTRVGFKGLLQPFADVFKLLT
KEVVVPSAANKVLFVVAPVVTLMPALAAWAVVPFGPEVVLANVNAGLLYIMAITSIGVYGVIVAGWASNSKYAFLGALRA
SAQMVSYELAIGFVLVSVLLVSGSLNMSEIVLGQGRGWFAERGLTFLSWNWLPLLPLFIIYVISAVAETNRHPFDVVEGE
SEIVAGHMVEYSGMAFALFFLGEYANMILLSCMAAIMFLGGWMSPIDIAPLNWIPGWIWLGIKTFCVVSMFVWFRASFPR
YRYDQIMRLGWKIFIPLTGVWLVVLAIWMQTPWNIWR
>SEQF1086_CAE41152.1 NADH-ubiquinone oxidoreductase, chain I [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEAIKDFFGSLLLTELFKGLRLTGKYFFKRKVTLRYPMEKTPTSARFRGLHALRRYPNGEERCIACKLCEAVCPALAITI
ESEQRDDGTRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHIHEYHGEKRGDLYFTKDMLLAVGDRYEAEIARRRAEDAP
YR
>SEQF1086_CAE41153.1 NADH-ubiquinone oxidoreductase, chain J [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTFTTVLFYILAFVLVIAAFRVITARSPVTAVLHLILAFANAAMIWMLLGAEFLALLLVLVYVGAVMVLFLFVVMMLDIR
IDSLRDGLKTYLPLGLVIGVVLVLEMAFVLGSTWYGAGPQAPVAGDYNNARALGEVMYTQYVYAIEVGAALLLVGMVAAI
ALTLRRRRDAKYNDPVAAVRVRAKDRFRMVKMTAQSDRAQARVASPSADAQGEQQ
>SEQF1086_CAE41154.1 NADH-ubiquinone oxidoreductase, chain K [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLTLAHYLILGAILFAIGIFGIFLNRRNLIILLMSIELVLLAVNMNFVAFSSWFGDIAGQVFVFFILTVAAAEAAIGLA
ILVLLFRNLNTINVDELDRLKG
>SEQF1086_CAE41155.1 NADH-ubiquinone oxidoreductase, chain L [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSSPNLYLLIALAPLVGAILAGQFGTGFLGRPIGRRGSHVITILGVLISTIGSFVVLGDVLDGHTYDGTVYTWSLIGQT
KLEIGFLIDPLSAMMMVVVTSVSLMVHIYTIGYMADDPGYQRFFAYISLFTFSMLMLVMSNNMVQLFFGWEAVGLVSYLL
IGFWYTRPTAIFANMKAFLINRVGDFGFVLGIGLLFAYAGTMHYADVFAQADKLAGETLPGTDWMLLTVACICLFIGAMG
KSAQVPLHAWLPDSMEGPTPISALIHAATMVTAGIFMVARFSPLFELSDTALSFVIVIGAIGALFLGILGIIQNDIKRVV
AYSTLSQLGYMTVALGASAYSVAIFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMGGLRKYMPITWITFLLGTLALVG
TPFFSGFYSKEHIIEAAGAANVWGASFAYYSTLIGVFVTSLYSFRVYFLVFHGKERFDAHGHGHHGDAHHDDHGHHGGTP
HESPWVVTLPLVLLAIPSVLIGAWVVEPMLFGKFFDGVIKVLPQHPAMAELGHEWHGWVAFGLHSVQTVPFWLVVAGAVI
AWYCYLINPRVPAAIQSTFSGVYKLLENKYYVDWINEQIIARGARCLGYGLWQTGDRGIIDGVLVNGSARVVGWVAAISR
HLQSGFIYHYAFAMIIGIMALVTFFVLIPQ
>SEQF1086_CAE41156.1 NADH-ubiquinone oxidoreductase, chain M [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MASDMASNNFPWLTLAIFVPIVFGLLVLALGRDDRPGLTRGLSLIGALAGFLVTIPLYTGFEAGTAQMQFVEKASWIEAF
NVNYHLGIDGISLWFVLLTAFITIIVVGAGWQVITSRVAQYMAAFLILSGLMVGVFAALDGMLFYVFFEATLIPMYIIIG
VWGGPNRVYAAFKFFLYTLLGSLLTLVAFVYLWNVSGGSFDIQTWHQTKLGYTPQVLIFVALLAAFAVKVPMWPVHTWLP
DAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHGLAGLMIALSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGF
VTLGFFIFNTAGLEGAIVQMISHGFVSGAMFLCIGVLYDRMHSRRIADYGGVVNVMPRFVTFFVLFSMANSGLPATSGFV
GEFLVIMGAVEYNFWIGLLTATALILGASYSLWMLKRVAFGDIGNDRVREMTDLSGREFLILGVMAIAVLFMGIYPKPFT
DVMHVSVEALLQHVAVSKL
>SEQF1086_CAE41157.1 NADH-ubiquinone oxidoreductase, chain N [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMQSHLDFALATPEILLLVLGLAILLIDAVSSHPERKTTFVLTLATLAALTVVSLLQWRDGVEGQTFNGLYVTDSLAHLL
KVASYIAVAATLVYGRIYAQQRDMMQRGGELYVLTLFALLGQMVMISAGNLISIYLGLELMSLALYALIALRREDKVATE
AAMKYFVLGALASGFLLYGMSMVYGATGHLDLAKIAEVIASGQAKQLPLVFGVVFLVSGLAFKLGAVPFHMWLPDVYQGS
PTAVTLILGAAPKLAAFAITLRLLVDGLHGLAADWQPMLMILAVLSLAIGNLTAIVQTNFKRMLAYSTISHTGFVLLGLM
AGVVDGKPDAAASAYGAALFYMLTYVLTTLGTFGIILLLARQGFECEQIDDLKGLNRRNPWHAAIVLLLMFSLAGIPPLV
GFYAKLAVLQALVEAGHVALAVVAVMFSLIGAFYYLRVVKVVYFDDPVDQPAALAVTAGQRSILSLNGALILVLGILPGG
LMALCVQVIQASLG
>SEQF1086_CAE41158.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNQTAAVWLLIALALVSANLPFLSERVFALLPYKRAGVHAPKPFWLRLCEVLVWYAVVGLLGFAFEAQLGNRFAQAWEFY
AITFSLFLVLGYPGFVYRYLYKKRRPARA
>SEQF1086_CAE41159.1 probable TonB-dependent receptor for iron transport [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKFYSSHPMPESLAAAIAVPLLGLLPAAQAASTAVQLPSVTVEGEYSSYQPESAQSPKFTAPLADTPRTVQVIPERLIQD
QGASDLEAVLRNAPGISMTAGEGGRPASDLPFIRGQNSASSLFVDGLRDPSTQSRDTFNLEQVDVVKGPDSVFSGRGGAG
GSINLVTKTPRNQDFTEVQAGIGTAETYRGTIDGNWVLGENTALRLNLLGTRDTVPGRDKAVEFSRVGIAPSLRLGLSGP
TRVTLGLYHYRHRRVPDYSIPYDPRTGTPITETIGVSRRNFYGLVRRDSGDTEDYAATVKWEHDLANGFKVENLARYSRA
TVEQITTMPELKTADLAKGLVYRNLRASYQVNDSFANRTDLRGTFDTGQWRHTFDLGGEFATSRRSRDRYKQEIPDAASP
CSPVTDGNNPALCASLRDPDPHVDFPGTVRRNHNPARYHTDILSLYGFDTIAFDEQWQLNLGLRWDHYKTSGRNLPVRGA
KPPVYERAARTDNLFNYQLGLVYKPRPDGSVYASYGTASTPSAVSDYAPADSISGTSQQLKPERSEAIEIGTKWQVLDRR
LLVTGAMFRETRKNTSIEVAEGLRAPAGKSRVTGMELGVAGSLTPRWDVYGGYALLDSKLVRASHKSGAQGQPLPSAPRH
AFSIWSTYKLLPELTVGAGAFYRSKVYGNADAGYNKDGTPKARWVPAYWRFDAMAAYQLNKHLTAQLNVYNLLDKTYYAK
TYRSHYAALGPGRSAMLTFKLSY
>SEQF1086_CAE41160.1 probable TonB-dependent receptor for iron transport [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKSLDSYSASTLANSLAAAIAVPALCLMPGAQAQTSAGVTQLAPVQVEGEASPYQATTVQSSKMTAPLLDTPRTVQVVPQ
QVIQDQAATNLQDVLRNSPGITMGAGEGGRAGGDLPIIRGQNAAGSIFVDGVRDPSTQIRDTFNLEQVEIIKGPDSVYSG
RGGAGGSINLVSKTPKARDFAEGSVQIGTDSNYRATADGNWLLGDNAAFRLNLMGNKGDVPGRDHAVDFSRWGVAPTLQL
GVGTPTRITLGYYHYQDDSMPDYAIPYDPKSGQPVTETQGVSRKNFYGLTGRDFMKSRDDVATLAIDHDFSSKLRLRNVT
RYGRSVTDYAATNPDDSKGNVPNGLVYRALKAGYYTNKTFTNQTDLSGEFETGSLQHSFDVGFEYSNIKQDKDSYTQTIA
KGAMPCKVGANDASNPALCTSLWDPDPHDYYPGHLSRNDNPARYSTDTIALYGFDTIKFNEQWQASVGLRWDNYRVSGSN
IARGRNDPASTPAFYSTSREDNLFNYQLGLAYKPVPNGTIYASYGTSSTPSAVAGSNVSDAVTVSNESLAPEKSRTVEVG
TKWQLFDDRLTLSGALFQDIRKNTSVAVSATETEQIGKAKVRGIELGFSGSITPKWNVYGGYTFMDSELVEGAYNSGAVG
QDLPNTPRNAFSLWTTYKLVPQLTVGGGAYYVDKVYGNADNGRNADGTPKARWVPSYWRFDAMAAYEFNDHLTAQLNVMN
IFDKTYYTKAYAAHYAALGTGRAAVLSFNIKY
>SEQF1086_CAE41161.1 probable GnaT-family acetyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTNMRQVLKTDRLVLEPQSMARFDQWFAMERQRDEAGHRDLTEDQAWLRLCARQGMWDAYACGFYYLLDPVSGEMRGEAG
FQFRRRGFGPGFDNHPEAAWAVASAHQGRGLAAEAMQALLAHHDRSSGRQRVVALIARSNLPSLRLAERLGFRGYSDVAF
DGAAHLLLERAG
>SEQF1086_CAE41162.1 short-chain dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTPREQPRFRGKRALVTGAGAGIGRAIALALAKDGAHVCVLDADHAAADETAAMVRQLGAEAATIVHDMGCASVVASIAS
MQDGFGAFDLLVNNAGISPKQPDGRKRMIWETPPEEWQRVIQVNLCGYFFALRAVLPGMVERRAGAVVNIASLAGLRYSS
IAGASYATAKNAVVGLTRQAAGEVAEFGIRINCVAPGRIETAMASVAGGEFNETIRASTPLRRLGQPADIADAVLFLLSE
QAGFITGETLPVTGGRGL
>SEQF1086_CAE41163.1 putative acetolactate synthase large subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLKAAGVAQIFGQSCPTALFLAADAIGIRQIGYRTENAGAAMADGAARVGRQLTVITAQNGPAAALLVAGFSEATKASVP
ILAIVQEVPRANADKNAFQELDHVQLFASCAKWVRRIDVAERAAEYTERAIRIATSGRPGPVVLLVSQDVLTTACPQARP
VAQDSDEPLGRFPLDRTVPVAGRLAQLAQRLLDAKRPLVVAGGGVHLSGACDALARLQSLAGLPVATTNMGKGAIDETHP
LSLGVIGNAMGTRSPAKHFMDYVRSADFVLFVGTRTNENGTASWSLFPEQAQYAQIDIDSEEVGRNYGAMRFAGDAAATL
QALGDALQGRGQAVAARRMAELAPAFEACRQAHRAELAPYAQSDASPMRPERIMAELRASHGDIIWVADASYSSIWLAQF
IPCTEAGTRFVTPRGIAGLGWGVPMAIGAKIARPGARVICLTGDGGFAHCWAELETARRHEVPLTIVVLNNGVLGFQINA
EESRFGTHTDVCHFGAIDHVAIAKACGCDGASVSDAASLRQAMAAAERSPVPFVIDVKTEPSAFPPISAFESQLRPLGGE
TP
>SEQF1086_CAE41164.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLLHRVLISLATGVLTLGVLGAAHADAYPTKPIRLVVPYPPGGITDIAARGLARAMSEELKQSVIVENRAGAGGIIGSDY
VARAPADDYTLLIGTSATHGTNPSTYANLPYSATGSFEPIAAVASSPLLVVVNPSSPVRDVQGLIAHLKANPGKESYAST
GTGGSLHLTLELFKLMTGTDIQHVPYKVSAPALTDLIGGHVQLMFDNMPSSLPQVKAGSLRALAVTGPQRSALVPELPTV
AEAVPGFASASWVALYAPKNTPAAIVQTLNAAANKGLKSQDVLAQFSAAGLEPTGGTSAALDSFMRAEIAKWAEVVKKIN
LPPSKL
>SEQF1086_CAE41165.1 probable LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNVTFRQLTAFIEVASSRSFSQAAQALHVTQPALTAMIQKLETQLGVVLFTRTRRGAELTTTGRELLPELQRILANLEVV
IEDVRGAASPRGGTVTLACIPSLSNTWIPSLIARVEQAYPRIKVILKDAMTENRSIHEMLRTGDIDYGVGSPSVEQDGLE
FDLLAHDELVAVVPQDHPLARRTLVRWSELAESPLIGMSYQSHVRMLVDEAFAANGISKRPKREVSLITTAIGMVRAGLG
VSVLPTTAIEVCNVAGLKVLRLHAPRVRRPLGFLHLPTRSLSPAARLLLRFVKDAGPIPLGKQPE
>SEQF1086_CAE41166.1 phosphoserine phosphatase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTIHHLVIQSPALAAEHAEQLAALAQAQGVTRISTTAARLLDVQQDGDTRAQVRHWAETHGVDAAFVPAGLALADCRILA
MDMDSTLINIECIDEIATVAGVGAQVAQITEAAMRGEIKDFSESLRRRVALLAGAPAAALERVYAEKLRLNPGAERLLAS
VRAAGIQTLLVSGGFTFFTERLRERLGLDHAHANTLEVDADGKLTGRVLGDILDGDAKAAHLAALAQCLSARPEQIIAIG
DGANDLKMLARAGFAVAYHAKPIVREQTPYALNVCGLDGVLNWFEK
>SEQF1086_CAE41167.1 transcription-repair coupling factor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPIPATATTLSALKPGARFTQPRPPGSGDGWLLADLARQAGKPLVVLTADPLEAQRLADEIPQFAPELRVRQLPDWETLP
YDAFSPHQDLISQRLRTLHALMNQGVDILTVPVTTALYRLAPPAFLAAYTFSFKQKDRLDEAALRAQLTLANYSHVTQVT
APGEFCLRGGLIDLFPMGSVVPYRLDLFDDEIESIRSFDVDTQRSLYPVGEVQLLPGREFPMDEEARNRFRARFREVFEG
DPSRALPYKDIGNGIAFAGIEYYLPLFFEQTATLFDYLAADTITVTVGDIDDAMQRFAHDTRSRYDFLKVDRERPVLPPD
TLFLDHEALFARLKDFPRLALMAERPHPDFAAAPDVAVARRADDPVARLRALLAQTGDRVLLCADSAGRRETLAQMLGEH
GLAPEAQADSIQAFLDDGARFGLAVAPLSAGFCVPGGALLFLTENDLYPGHAGVTRRGKRTQERTSNVEAMVRDLAELRA
GDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLEYASGSTLYVPVSQLHVIARYSGADPDAAPLHQLGSGQWDKARRKAAR
QVRDTAAELLALYAQRAAREGYAFKLPMSDYEAFAEGFGFEETPDQAAAIQAVIMDMTSGRPMDRLVCGDVGFGKTEVAL
RAAFLAVANGKQVALLCPTTLLAEQHAQTFSDRFADWPVRVVELSRFRSAKEVAAAVEGINDGRVDIVIGTHKILSKDVR
FKRLGLVIIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAIKTFVRREDGSTIR
EALLRELKRGGQVYFLHNEVETIHNRRARLEELVPEARIAVAHGQMPERELEQVMKGFYQQRHNVLLCTTIIETGIDIPT
ANTIVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITNNAKKRLEAIQAMEELGSGFYLAMHDLEIRGTGEIL
GDSQSGNIQEVGFSMYNEMLNEAVRALKAGEEPDLDAPFNLACEVNLHAPALLPSDYCPDVHGRLAIYKRLSHADGEDDL
IRIQEELIDRFGKLPEAAQTLLATHRLRLAAQPLGIVKIDASETQALLQFGAKTTVDPLRIIELVQRQRHIKLSGQDKLR
VEIKAPQIAARADAVRAVLRALK
>SEQF1086_CAE41168.1 4-diphosphocytidyl-2c-methyl-D-erythritol synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSESLIAIVPAAGIGARASLPGEAAVPKQYRPLAGQPMLRHAVRALLADPRIVQVRVAVSAGDGWVEQALAGLPRTVWRP
CGGPNRADTVAAALADSGAAADDWILVHDAARPGLPAAALARLIDACLDDAVGGLLALPVADTVKAGRQRVSRTVDRDGL
WLAQTPQMFRAGLLRDALARARAAGLAVTDEASAVEAAGHAPRLVAGALRNFKVTWPDDFELMEKWL
>SEQF1086_CAE41169.1 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNIPFRVGQGFDVHALVEGRPLIIGGVTIAHTHGLLGHSDADVLLHAVTDALLGGAGLGDIGRHFPDTDPAYRGADSRVL
LRAAFDKVRAAGWAPVNVDATIHAQAPKIGPHAAAMVANIAADLALDAGAVNIKAKTNEGLGYLGRKEGIAANVVVLLAR
AG
>SEQF1086_CAE41170.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVSEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41171.1 fructose-1,6-bisphosphatase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRKTLTQYLVEQQRSAQALGPEVRLLIEVVARACKAISHAVSKGALGGVLGSLESENVQGEVQKKLDVLSNEILLEANE
WGGHLAAMASEEMETIHLIPNRYPKGEYLLLFDPLDGSSNIDVNVSIGTIFSVLRAPHRVAGADVCEQDFLQPGSQQVAA
GYAVYGPQTMLVLTIGNGVVGFTLDREMGSWVLTHESMRIPEDTKEFAINMSNMRHWAPPVKRYIDECLAGKTGPLGKDY
NMRWIASMVADVHRILTRGGIFMYPWDAREPGKAGKLRLMYEANPMGLIVEQAGGAAIDGTGRILDIQPDKLHQRVSVIL
GSKNEVERVGRYHAEAHAS
>SEQF1086_CAE41172.1 aminopeptidase N [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRTDTPVTVYRKDYQPYPYTIADVALEFDLDPASTTVRCLMQVARKADARDDAPLVLDGEALELVSIRVDGRDWARDGYV
LDDATLTLRGLPPSAAVEIVSRCRPAANSTLMGLYVSGGNFFTQCEAEGFRRIAWFADRPDVMSRYRVTLRAAPDYPVLL
SNGNLLATATLPDGRLQAEWEDPFPKPSYLFALVAGRLTHREERVRTQSGRDVLLQVYSDPGSENRTEWALESLRHALRW
DESRFGLELDLDRFMVVAVRDFNMGAMENKGLNIFNAAYVLADPATATDANYEGIESVIGHEYFHNWTGNRVTCRDWFQL
SLKEGLTVFRDQEFSADMMARGLDEQAAASARAVKRIDDVVTLRAAQFPEDAGPMAHPIRPDSYQEIGNFYTATVYEKGA
EVIRMQHTLLGEPGFRAGMDEYFRRHDGQAVTCDDFVAAMESVYAARNPGRDLSVFRRWYSQAGTPRVSVKLDHDAQSGR
CTVTLTQRCAPVGVEKRAGRDFAKQAFHIPFAIGLLDAQGRALPLHLNGQPARDTVLLELTEARASWTFEQVPDMPVPSL
LRGFSAPVIVEYDWSDADLALLSAHDTDPFARWEAGQELATREILALTASHQAGQPLAVRPAFIAAWRALLTDPTLDAAY
RARALALPSEKTLAERMEQIDPPALAVARDFLRAEVGRQLAAPWRAAFDANQTPGAYSPAAGPAGRRALKNQALSHLMAA
ESADAQALAQAQYDQADNMTDSMAALSALVNFGAPDSAAAALAAFYERWRDDPLVVDKWFTLQATARSTDIDAVRALMAH
PAFTLRNPNRARALVFQFCLNNARGMHRADGRGYDFWAEQVLALDALNPEIAARLARGLDNWARFAEPLRGAMQAALAHV
RAHAGLSRNVQEIVSKALDLAA
>SEQF1086_CAE41173.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFSIHAYSRLARLAGLAGLAGLAALLAGAALVAGCAAPSVSARVTSFQQWPDGVAGQTYQFAPESGQLNNLEYQSYQDMV
RAGIGATGLVEAREGRKARFTVSFRYGSAQTQVMVRRAYDPYFYGGYGGYYGPRWWGGGVGYWGPEWVDVPTVAYRNSLS
LEIRDTARGGAEVYRSTAYITSGRDDLLGAMPYLVQAIFDNFPGNNGSEREIEYPLAR
>SEQF1086_CAE41174.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41175.1 ABC transporter, ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARNKLDLRGSAFKAVLGFTFRHWARQPWRIGLIAMLALLSALADILTPLYVGRLIDAVAGGAPADTVARNAALGAFWLL
IALGVGATLLRQAIFMNIIALTLKMMHDIVGLAFHQVQRLSSDWHANTFAGSTVRKITRGMWALDLLNDTLLIALLPSLA
MLAGATALLGWHWPLMGLVVGLGSLLYVAVTMALSLDYVAPAARLGNAWDTRMGGALADAVSCNAVVKAFGAEWREEARL
ARVTDKWRHRTRRGWVRGTINGGVQGAMLVAMQAAILGVALLLWQRGQASVGDVTFAFTTFFMLQGYLRDVGMNIRNLQR
SINDMEELVSLQRQPLDVEDLPGAGPIDIGAGEIRFENVTFRYGPHEQPLYRDFSVRIAPGERVGLVGHSGSGKTTFIKL
IQRLYDVDGGRITIDGQDIAAVRQASLRSQIAIVQQDPVLFHRSLAENIAYGRPGATQAEIERAARLASAHDFIMALPKG
YDTLVGERGVKLSGGERQRVAIARAFLADAPILILDEATSSLDSESEVLIQRAMERLMEGRTTLVVAHRLSTVRALDRLL
VMDRGRVIEEGSHEALIRLHGGVYRRLFERQALELTRGLSQWELGGAAAS
>SEQF1086_CAE41176.1 thiopurine S-methyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDADFWLDRWREGRTHFHQTRVTPLLQKYWPTLDVPAGGQVLVPLAGKSLDMVWLAGQGLRVLGVELSQLAVEQFFDEND
LRPEIHQSAQGRHYVAGNLELICGDVFALEDATLAACAGVYDRAALVALPEPMRKRYAREVYGRLGRGCRGILITLDYPQ
DQMEGPPFSVDDAEVQALYAGHTEARLIDRRDILDKEPKFNQRGVARLDTLVYRLERLG
>SEQF1086_CAE41177.1 vir-repressed protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGMKSILGLLLAAALLGGCAVYTPHGAAVVDPPDRGGGFCPPGQAKKGNC
>SEQF1086_CAE41178.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKFCMATLMLAASLALAGCAGGQGSQPGPPHPGAVNPYSSGGFHDAGPDYPDTGR
>SEQF1086_CAE41179.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKSSLYRIAALSAAALLLAGCANQRAPKESGFLGDYSQLREEQVPGGARLIYRDAALKPRQYTAMWLSPVEYYPSPQPSA
QVSMETLTELQNYLDQSLRRKIGREIRLVNGPGPGVAKARIAITAVGSESEALAAYQYIPVALAVTGARAVLEGGRPQQA
TIAIESKVTDSQTGQLLWASVRGGTGERVRAIAQGQASVPASALKPLIDEWTDNVAREIRNYVRSK
>SEQF1086_CAE41180.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPDAHDPYLVSGRFEIANLLQTLQARQCLLLMRIPGRPFNSVTSVLHVDAQAGQVVLDAAQDDTLNQRLADVGDVAFDTS
LDNISISFAAARVARCEFEARPALLVDLPETLTRVQRRDTFRIAVPVAQPATWVREAGGAEPLALCDISPGGLALADPLQ
TLDPAPGKIYRGVLALPELGAFAAAIRVVHHLDEVLAKGKTSRRIGCAFVELDKGTGIRIQAYVNALQRDQIARQRGL
>SEQF1086_CAE41181.1 putative phospholipase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQVPDPRSPFIRPALAGALALALAGMSLPALAGISYRLDRPAAAPGETVRLEAVFFNDGSASAAWNAPQQLVLQWRGADD
QTIRSLAQRPAGEAALNIPVNNFARMSWDAVVPVHARGLQAVSIEGESTMLALDATGREQDTLASTPADVPVTDARTGQP
LPPAAVTAAGVSPDSGPAPAQVAVSQTFQPASAFDVFRSAISEYQPMYFDIGTREQTTARFQISAKYRLFSPKGDRPATF
GENFYLGYTQTSLWDLEGDSKPFIDTTFNPSAFWLSDNIWSSASQNWRVGLNTGVEHQSNGKSGNDSRSLNDAYVQPALN
YRFDSGSTLTFAPKVKTYFGVARENLDYADYAGYVDWNLRWAQDGGAVVSAMYRQGASSRRTTQLDFAWPLKRTWLDMNG
YLHLQYFNGYGETLLGYNQRHDSQFRIGLSLVP
>SEQF1086_CAE41184.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNITQEIAKRVVQTSIRDLPADAVGYSETLAMSALGAMAAGHRSAGGREIVDYVKSAGGAAQATVLGHGLKTSMEMAGLA
NGTFAHATEYEDDSFPEAVSSYTLFPAIFAVAEHAQASGARVVEAFAAGYEAQARIGLACRQARRNGFMVLSLAGSIGCA
ASAAKLLGLDERQTTMALSLAASQGAGIGYQTGSMAHIVEMGFAARNGIAAALMAAQGMTGQPDVLEAPRGLMNMITGDQ
VEAPAAIIEHWGRPYRLMEIGIKSYPCCYHLQRIIETTVDLRHAEGLAAADIEEISVEVNAFFPTVVQHMEPHDEIEAQF
SLPHVLAIAMLEDQVVPAGFSQARIDDAAFQAFRRKVRQVVREDWGWTPTGWTPRITYRLADGRVIVREPEQARGQPPAL
LTFDQCVPKYLGCVQGIYPEQQVERSIALLRGLAGLDSVAELMRCLATPA
>SEQF1086_CAE41185.1 biotin carboxyl carrier protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLVVKTKFSDLTHEDIDRILEIVNRVDDIDLQIQVDGLGLRVRKGNVGAPVAPPAVSAPAAAEAPAPAPSPAPAAQPAAA
PAAAPAAPAAARQDLLSITAPMIGRFYAKPSPNDPAFVALGSQVGPDDSVCILEVMKLFNTVKAGVAGEIVEILVQEGDM
VEEGDVLFRVKPQ
>SEQF1086_CAE41186.1 probable carboxylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRRIGIIDTTLRDAQQCLWATRMTAGMMDPIAQALDEAGFDMIDFMAPVQFDVCVRYLREDPFEKARHFRKRFRNTPMR
SYCRSKSLVGFSMVPDDMVELWIDCLAANGFSAVGTLDSLLDVDNMKVSVRRAKKIGIKSIGALVFCESPLHTDALYAGT
AAELVRCGVDGIMLKDSGALLTIERIRTLIPALRAAVGDIPIEVHSHSNTGLVQRVYLDAADLGIDQLHTSIAPLAGGVA
QPSIQNMTRNLAQRGYRTDVDMARVEEISAYLHRLAARYDFPLGKPMEYDEFHYRHQMPGGMTENWRFQLRQAGLENRFE
EILEEIGRVREDLAWPIMVTPFSQIIGVQAMLNVVNGERYRAVPDEVKMYALGHFGRLLGPVEPNALDRIVANGSPDVGL
TPQPKDPALPGLRKANPGMTDEELLLRYMFPADDVEATLGCKPLKLTVPAGGPIVRLIEEILPRAGIRHFELRSQSEHIS
FTRP
>SEQF1086_CAE41187.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPRRIRMTQPAASSHAVIVMYDAPAELDAWMHGDHYREVLATPGVTGVRRYEVLDGPQACRKYLAVIETDDLDATLAWRD
SEAGARSQ
>SEQF1086_CAE41188.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFRTAMHYPRHNLTFKGARSAWLEDVGLLFEEMDSAGIRYGVAMGRASSGAGNLGGVANQDIVDLLATYPDRFLGFLGVD
LDNIAGSLAEIRELAGAPGVKEISIEPGSARVPRWSDDKTLDPVYELALELKLPVSISLSGLLSALAGHDITWSSPVSIQ
RVAQRYRDLKIVVSHAAWPYADEMVVVALACPNIYVSPDLYASTRGMICADSYVKGANMFLEDRTLFGTAYPVKDIQDSL
RDFLQLGWREDIIHKVLWTNAARLLGVDK
>SEQF1086_CAE41189.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRTALIAGPYGIVGNALVQHLARDAAWDVVTISRRQEAALPGVRHIAADLLDAAQAEAALAAFPGITHVFYCAYAPRPT
LGEEAAPNLAMLANLVSAVDRHARGLERVVLVHGTKWYGNHLGPFRTPAREDDARHCPPNFYYDQQDWIAARQRESGRWS
WTAFRPHGIFGYALGSPMNHLMALSLYASVMKAVATPLKFPGTPAAFAALNQCTDARLLARAMAWSVDVAACENEAFNFH
NGEPERWANLWPAVAEAFGMQAGGVQQIRLAAMMPANEAAWQAICQRQGLRHFPLEAYVNWSFADWVYSNGFDQVCSLYK
LRRAGWTEILLFDDMLKSMLSDLRQRKLLPA
>SEQF1086_CAE41190.1 GntR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAQMKDNNVSNRATLVLYENRSIPLYRMIKEELIRFVQKKGIKSGMALPGDNELASQFGVSVGTVRRAIAELVSERIVIR
QQGRGTFLAPYDTSRMLNSFWHIERRDGVVDVPLVSTHGFSQASATEEVAQKLALQPGDPVFVIKNSMTMQGTPVLLDTI
YVPVRTFEGLTREKLSARDATIYDFYREQYGINIVKTIDRVSATVADKDTAKRLGCKLGASMLRILRVAYSFGDTPIEYR
CSLLDSENHEYVDVTGGDTSRYG
>SEQF1086_CAE41191.1 biotin carboxylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLKKVLIANRGEIALRIIRACREMDIRTVQVYSSADEDSLPVRLADEAAPIGGPEPSASYLNIAALIAAAREHGCDAIH
PGYGFLSENEDFAQACIDAGIVFIGPDPGAIRMMGDKAQARKIAKEAGVPIVPGSPEPVSDVEEAIRVAREVGYPLLVKA
AAGGGGRGMRVIQGEAQLREGLERASMEAKSAFGDGSVYIERYISPVRHVEIQVFGDGEDVIHLGERECSIQRRHQKLLE
ESPSPVLSDETRQRMGEAACALARAVKYRGAGTLEFVMDGKSGEFFFIEMNTRIQVEHPVTETVTGVDLVRLQLAVAAGG
RLGLRQQDIVMKGHAIECRINAEDPQKAFMPSPGTVNDIRLPSGPGVRMDSHVYRGYKLPPYYDSLLGKLIVWDESREKA
IARMLRALGELEIVGVKTTKEFHERLMRDEDFIAGNVSTQFVKEKLYADHPMCHLL
>SEQF1086_CAE41193.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKRRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41194.1 hypothetical protein BP0892 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGDVMQRGELAYWLNVVVENGEPGAPQIPVPEQFVTALTTLRCIERNAQGQLVVTEKGRLALHMEEPGALHRQ
>SEQF1086_CAE41195.1 hypothetical protein BP0893 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQHRDQEVLIDVSTAAMDTGGYGVLLTVTAEGGTEVDAAFSYLGTCASLDEARDRAEAFAQDWLRENIYR
>SEQF1086_CAE41196.1 putative mannose-6-phosphate isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHARRTPMSAASFHTDLPALVAQLRQHFNTVIVPLWLERGFDAGLGLPCEALDAHGAPLPAQRYRAMACARQLYVFSRTD
GAAAAAHAERLFSSLLRYFQNAAHGGWRHSVDAQGQPLDDTQDLYTHAFVVFACAAYFARTRDARARKTLLATVDVIEQR
FRTRQGLYVAALSADWAQVVRGPAQNPVMHLTEAYLAAAGVVEPAWFAQTLGRLTQDVASTFLYAPRLCIAEEPLDQPPR
FEPGHQFEWYSLLHGAPDLFGDLELGSALQRGCAWVRQHGVDAHSHGVAAVLDESGAVRDATQRIWAQTEYARYLALSGQ
WPELATQLRAFQARFLHQDGWHECLDAQGNVSRADMPSTTPYHLATCYAALEDALAGQG
>SEQF1086_CAE41197.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSVMCPACQAINAGSSGVEPHPRLGHQGFTNPSQKGREANREDHFRCIECGAKWLRETDRWGVDLGFRLAP
>SEQF1086_CAE41198.1 hypothetical protein BP0896 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVQKVLNGFAVVAFATQPEHGMPPRAFIQTAPMDGAGQAEPQVFEIFLARRFRSAVEAMSAARNALDRVVSVDQDGVPAP
LPD
>SEQF1086_CAE41199.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWTYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41200.1 putative ferredoxin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDSTPAVRVCAAADLVDGGLGVKVPVTDGAGQASAFFVRYRGQVYGYLNRCAHVGVELDWENSFFTRAGDLIMCARHGA
TYEPDTGLCIGGPCRNGRLTALQVDERPDAGGMAVYWLPSGKIQPRG
>SEQF1086_CAE41201.1 ABC transporter, ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMPSPSPTPAGRNSLDTLRTLAPFLWPADRPGLKARVVIAILCLLAAKAAVVYVPILYKSAVDQLGGGAPGAVTVPLGLI
LAYGAARVLSLLFSELRDAVFARVGQHAIRAVGLQIFLHLHALALRFHLARQTGGLTRAIERGTKGIQTLLTFLLFNVLP
TLFEIGLVCAVLWKMFDGWLALATGATVTLYLAYTLVVTEWRTRFRRQMNETDSEANTKAVESLLNYETVKYFGNEEHEA
QRYDASLRRYERAAVRSQVSLSILNIGQAVIISAGLTLVMWMAARGIAQGRYTLGDFVLVNTYLLQLYDPLSFFGFIYRE
IKQALIDMERMFELLGEGREIADPPGALALRLEGGAVEFREVYFGYDPRRPILKGVSFRIPAGKTVAVVGTSGAGKSTLA
RLLFRFYDADRGAILVDGQDVRGVTQASLRAAIGVVPQDTVLFNDTIHYNIAYGRPGASDGEVQAAARLAHIHDLIMAMP
DGYRTMVGERGLKLSGGEKQRVAIARTLLKNPSIFLFDEATSALDTHTEREIQANLREVSQGRSTLIIAHRLSTIADADE
IIVLGDGRVVERGRHQALLAQGGIYAGMWARQQEAARPAAVALDD
>SEQF1086_CAE41202.1 probable oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAQVPVLKLNDGNAMPQLGLGVWQVPNDQAAASVKAALAAGYRSIDTAAIYGNEAGVGEGLRAAGVARKDLFVTTKLWND
RHGYDEAQRAMDESLRKLGLAYVDLFLIHWPVAGSDKFVDAWRAMVAMKEDGRARSIGVSNFTIANLRRLVDETGVVPAV
NQVELHPGFAQRELRAFHAEQGIATESWSPLGQGAVMHDATLAGIAARHGKSAAQVTLRWHLQNGLIVIPKSVTPARIQA
NIDVFDFELSADEMADIDALPEGPRLGPDPATFTG
>SEQF1086_CAE41203.1 putative oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEYVRLGSTGLKVSRLCLGCMTYGEPARGNHAWTLDETQSRPFFRQALDAGINFFDTANSYSDGTSEEFLGRALREYVPR
DEVVVATKVFFPLRKEPNSGGLSRKAIMREIDASLRRLGTDYVDLYQIHRWDYDTPIEETLQALHDVVKAGKARYIGASS
MHAWQFAKALYLADRHGWTRFSTMQNHYNLLYREEEREMLKLCCAEGVGVLPWSPLARGRLTRDWAEGSARADTDDVLKR
LYSATEQADRGVIDAVGEVAAQRGVSRAQVAMAWLLRQPAVTAPIVGASKPRHLEDAVAALALRLTDEEAARLEAAYAPH
PVAGFA
>SEQF1086_CAE41204.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTPRQHFYFVWGMPIVLGALSVFGLLAALLGTGVWHWASWLALAWLLVVIARFWIVPRERRPAPGPRRGG
>SEQF1086_CAE41205.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTASTIKTWYLVHKWTSLVCTLFLLIICITGLPLVFHHEIEHLLDEGKPVAQVAEGTPDASLDTIVARAHALYPDEYID
YVFLDDEEPQVYVGFTPKLGQAVEAGHAVRVDARTGDILHDGPKYSADRFSFMGIMLALHVDLYAGLAGELFLGLMGLLF
VIAIVSGVVLYGPFMKKLDFGTVRASRSNRLKWLDLHNLLGIVTLVWAFVVGLTGVINELSTPLFRLWQQTELQAMTAPY
QGKPVPRPAELSAPQRAADTALAAVPDRALTGISYPGNAFGSPQHYIVWLKGNTPLTSKLNTPVLVDGKTGELAAVARMP
WYLTVLELSRPLHFGDYGGMPLKIIWALLDLITIVVLGSGLYLWLARRKATDARVAELVRRHQQAAEPQRTPA
>SEQF1086_CAE41206.1 serine/threonine protein phosphatase 1 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAPNLQYPAFLRLPRNPAGRDFAVGDIHGHFSRLEQALDECGFDPRRDRLFSVGDLIDRGPDSEAAVQWLAHPWFYAVQG
NHEDYAIRHVRTGLVDQDNWRSYGGGWFLDAAPERQRAWAGAFAALPVVIEVATQAGPVGLLHADCPVRDWSRLEYFLQA
RPKRARSVCQWSRERLASGDARGVDGIRAVVAGHTPVSEPVVLGNVYHIDTQGWRPHGYFTLFDLCTLSAWPRPAQAGAP
AARG
>SEQF1086_CAE41207.1 penicillin-binding protein 1A [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTSSQSTKPPPPGGPRLFRKSLLIKAGVAVAGLGAAGALALGLALALAWPSLPELHAMTDYRPRVPLRVYTADGVLIGE
FGEEHRNVLRADEIPQVMKQAVLAAEDDRFYQHGGVDWMGVARAVLTNMVKLSKSQGGSTITMQVARNFYLSSEKTYSRK
FYELLLTYKIEAELTKDQILELYMNQIYLGHRSYGFAAASRTYFGKPLSEVTPAEAAMLAGIPKAPSRANPLASLPRATA
RQQYVLGRMQTLGYLTPEQVQEARAQTIVLRGSEGGPAHGFAIHGEYPAELVRQLMYSIYQDGAYTHGIDVYTTIDSKAQ
QAAYRAVRAGVLDYTRRAPYPGPQAQIDLPDGIEQDAQAFDEILDSVQDQAPDSDDLLAGVVLSTSPTSVTVARTATDIV
TVDDKKALAIVARALAPNAKDALRIRRGSVVYLHKNGDTWEIINMPALQAALVSMSPADGAISAMIGGFDFHRGSFNRVT
QAWRQPGSTIKPFVYAAALERGMTPATQVNDQPFMLTAEQTGSRAWEPKNDGNRYEPMLTLREGLYRSKNMVSIRILQAI
GPEYARDYLTRFGFEQARWPAMLPLALGAGGATPLQVANAYSVFANGGYRVTPYLIDRVTDRSGKVLMQTTPVKAGDETA
RAIDPRTAWVIDDIMHDTTTKGTAARVYRTLKRNDIAGKTGTTNDAVDVWFSGYTAQQTTTVWMGFDQPRSLGTNEFGSG
LALSTWLDYEQPTLKGTPQAPRAPRPQGLIVDNGEYYFSEFPPGQAVAALDLSSGDELTDFLNNMRPSDGAPARVQQPGQ
PPAGSSSGGQPPIPPIPVPRADLPDGQATPASLPLGAPPAAASAPPAAPAHGGASAQPVTLPGRVGATPL
>SEQF1086_CAE41208.1 putative peptidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLTLIKRTVLAAGLIGTTLGAAAQPPRAYPLKDFFRNPERGYFRLADDGKTLGFMQPVSIDGQPPRMNIYVQALADGVPA
GEPRKLTSETARDISNFFWKGDDTVLYQKDFGGDENFHVLAVNARTGQVADLTPYEGVRASIEDDLPDDPDHVLISHNRR
DPQVFDVYRVNVRTGAAELVAQNPGNVVGWQTDHAGKVRAAITSDGLNTTLLYRDDEAAPFRPLITTDYRVSVSPAFFTF
DDRKLYALSNRGRDKLALVVIDPATPDVEQPVFEPDEVDLDAAGYSRKRKVLTVASYQTDKPRHRFFDAETEALYARLAR
ALPGYDFALQGWNRDEDTFIVAAYNDRTPGSRYLYDARRDSLHKLADINPAIPEADMAPVRPVSYQSRDGLTIHGYLTLP
AGRAPRNLACIVNPHGGPWARDGWGYNPEVQFLANRGFCVLQMNFRGSTGYGRKFWEAGFGQWGLKMQDDITDGVQWLID
QGIADPRRIGIYGGSYGGYATLAGVAFTPDLYAAAVDYVGVSNLFTFMNTIPPYWKPLLAKMQDMVGDPVRDKARLEATS
PALHVDRIKTPLFIAQGAKDPRVNKAESDQVVQALRQRGVEVEYMVKDNEGHGFHNDENKFEFYAAMEKFFTEHLKP
>SEQF1086_CAE41210.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTPHTDFFGLTIPFMQLLGVVPEHSGNGTARTRLPARADLVNSRGDIHGGTLMSVLDFTLGAAIRGDTPEVGVATIDMN
TSFMSPGRGDLVIETRCLRRGASIAFCKGEIRDSAGELVAKATATFKIIQRRPGGD
>SEQF1086_CAE41211.1 DNA-damage-inducible protein p [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQLQRKIVHIDMDAFYASVEQRDNPALRGLPVVVAWTGPRSVVCAASYEARRYGVHSAMAAARAQRLCPDAVYVPPDFN
RYREVSRQVRAIFARHTDLIEPLSLDEAYLDVTCNKLGLASATEVAQIIRRQIREETGLTASAGVAPNKFLAKIASDWNK
PDGLFVIKPSRVLDFLQPLPVRKVPGVGKVMQARLEQLGIQTVGDLSRHSVAELEQRFGRYGVRLYELARGIDERAVQAD
QPAQQVSAETTFDTDLALEALGEALERLAAKVWEQGAKKGRIGRTTVLKLKTDRFRILTRSLTLMQPPGSAAELAAIARQ
LCTRVDLPAHTRYRLVGVGMSNFPDAQAEAPRQAELFGDAF
>SEQF1086_CAE41212.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE41214.1 putative decarboxylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGAIAAHETGDTAATATWDETVWRILKKEDIRLVTYVPDKVLKPLIDRVEADDHFQVVCPAREEEALGIVCGAQMAGMRS
ILLTQTSGFATLANVLASLPVPYEIPVVMVISERGALGDRQLVQVRVWQTMRPILDSLGIPHHTLTRADAVEFVAEEAIR
QAFATRSPAALILSPKLTKKSSD
>SEQF1086_CAE41216.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKSRICRRLAGALLGVVAACASQAQDTIRLGLQAVPTDELYQARDWAQPYGLKTEISTYSSAGDSLKAFLAGRVDVVSGG
AARLVTMAAKQPEVFYIVAANQYGGDRYGIIVGPEAPYKSIADLKGKKIGVVSGSGAHGTLMLYLEKNQLSPKDFRFVNM
KVEDIAAAVNRGVVDAGLAWEPHVALAEVNGAVKRIQSMKGVNESPNFILVNREYAGKHPEAVAKYIASMIDMSQLTAND
PKKAGEMIAAQLGKSGVSIPPKAMELAVSRIVVDPRIEDRLLEELPAIAEPMIAAGRINAMPEFGKLVQKSYYERAAALA
KARQ
>SEQF1086_CAE41217.1 probable inner membrane component of binding-protein-dependent transport system [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPLAATTAHTVMIRPAARRTPGACAAYAEFGRFMLPIVTLLVFWEFAVRAGWIASNIFPSPSMIFARASEQLFSTGPEQ
GMLFKHIGASLYRAISAFLLSVLIGIPLGFCLGLMPSVHKWTSPILSVMLPLPAVAWTPILLVAFGQGDRTIITVCFLGA
FFPVLYSTIQGVKAVSKQSIWVVRSMGGKRRHVLLNVLLPSCLPALISGLKLGMAHSWRTLVAAEMLAAISTGLGYMIFA
ARSYMDVSTMFVGIALLALIGMAIEYGIFGMLEQRTIRKWHGASRIGGSK
>SEQF1086_CAE41218.1 probable inner membrane component of binding-protein-dependent transport system [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSAMASSMPGGDGARVFDRLLVPLVSLGVPLLIWEFLARSGLVSDFLFPPPSSIFSTLWSDSGADVHGGQLYRHVYYSM
MRLLAGLALAAAVGTLIGILIGLTRWGRFVFKPLLSLFMPVPTLAWTPILLLLIGVDNKTTILIVFIAASFEVILNVVAG
IENMNVKVFWVARSMGASRLQIFFKVIVPGILPYLITGVRLGSGYAWRALIAAEMLAASSYGLGFMIYEASEFMDMTTIY
GGLIMIALLGYLIENVLMGAFEERTVGKWGVQVER
>SEQF1086_CAE41220.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MREMSMNEETAAKLQGLTRRFAKLVHDLKFEDLPEEVLHKAKLIIRDGLGNQIAASAISEPARRVVEIVREWGGKPEATV
IGYGFKVPAPLAAMCNAMLGHGVELDDAHGSGLIKGGSVMIPSIMALAEANGKSGRDVITAIVAGYEVAVRIAKAINLGH
RQRGFHTTGTVSLFGAAAGGAKLLGCDEEGIAAAIGLAAMQSAGIQSYLDDPCMAKPFSPGKSAFNGTMAAVMASRGFAG
PRKALECKEGFFNAYCEDIRVDDLLDGLGERFVIMEVGFKPHAACRYAHGPIDLAQQFFEEGVRLEDVEKIDVRMCELSI
RQASKPKAPNLNAAMGSTEFGVALALAGGRNGLREYWDGFNDQRVHEAAADRTRLIMEPAYGVTGRQAAMAVTLKDGRVL
QRDQAEPKGEPSNPLTDQELTDKFTGLVDMVETSSQVSGEFSQRLMRLEDEKAIADLIGPLKAAGQTPALRAA
>SEQF1086_CAE41221.1 putative succinate-semialdehyde dehydrogenase [NADP+] [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNVTDGIAQRSMAEYTGILINGVWQAGEGSFPVLDKYTLVPAAEVFRASRRQVAQAVAQCKAAADRGAPAARERAAVLRR
AAGLLDTYRQDFEAVMMVEGGFTVHDISAEFTRAKVTLELSADEALRLTGSMVPFQASPGAEHKLGFTVRVPVGVVAAIT
PFNAPLNTVLHKVAPAFAAGNAVVLKPSAFTPLTSALLARVLLEAGMPPEFLAVVQGEGDDVGTWLLEEQDVAFYTFTGS
TRVGRIIQRAAGLRRTQMELGSIASTIVCADADLEAAVPRIANAAFRKAGQVCTSIQRLYVEDALKNELIERLSRYLDDM
PAGDPRAVATRVGPMISEAAATRAQAWIAEAVEAGARLVRGGERQGAVVQPAVLADVPESCSAWSTEVFSPMVSVGGFAR
FDDVLASANDTPYGLAAGIFTNDHARIMSAVRSLRFGTVHINETSSARCDVMPFGGVKDSGFGKEGPGYAAREMTEERLI
VFNQ
>SEQF1086_CAE41222.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIDVLVIGGGNAALCAALSAREAGASVLLLEAAPREWRGGNSQHTRNLRCMHDAPQDVLVESYPEEEYWQDLLKVTGGIT
NEHLARLVIRRSSNCRPWMRSHGVRFQNSLSGTLHLARTNAFFMGGGKALVNAYYRSAAALGIQVRYDTPVAAIERDGER
FVAAVLEDGARIEAGSCVLAAGGFESNLDWLDQAWGTNENGERPALQFLIRGTRYNRGVLLRHMLDSGADAIGDPTQAHM
VAIDARSPLYDGGICTRIDCVPLGIVVNRAGQRFYDEGEDFWPKRYAIWGRLVAQQPGQIAWSIIDRKSIGRFMPPVFPG
TQADSIEALARKLGLPVEQTSRTIAEYNATCISGTFDHTVLDDCRTQGLTPAKTHWASPIVEPPFQGFPLKPGITFTYLG
LKTDDTAAVRFNDRPSPNLFVAGEMMAGNILGKGYTGDIGMAIGTAFGRIAGAGAAQHALAGRRQAA
>SEQF1086_CAE41223.1 citrate utilization protein B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTPYTESQVMARATIPIAVEDTGIEHDEAQARRILTICNACRYCEGFCAVFPAMTRRLDFVKEDVHYLANLCHNCGACL
HACQYAAPHEFDVNIPRTLAKVRLKTYSEYAWPRALGQLYDRNGLTLSLATAVGLSLFLALLFWLNGALWHAPLQGNFYA
IFPHNLLVAMFGLVFLYAALALGIGATRFWRGTRQDAAPPSSASGAAAEASFDVLTLRYLGGGHGEGCNEESARFTLWRR
RFHHLTFYGFMLCFAATGVATVYHYALGWQAPYPVLSLPVLLGTAGGIGLLIGPAGLYLLNRKRHADHGDPAQHAMDRGF
MALLFFVSLTGLLLLALRDTSWMAVLLAVHLGFVMAFFLTMPYGKFAHGIYRSAALLKNAVEKRTPGTLNVGAD
>SEQF1086_CAE41224.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTADPEQLSLPCLYMRGGSSKGGFFLAADLPADPLERDATLLAAYGSPDARQIDGIGGADPLTSKAAIVARSGRPDADVE
YTFCQVDLTRAQVSTGGNCGNMLAAVGPYAVLRGLIPAREGQNRVRIYTTNTKQVVEASFAVRAGVPCVEGPTVVPGVPG
SGATVAIDFGDCAGSVSGTLLPTGRAADAIEIDGRPVRVSLVDAATPFVYVVAEDIGGDATATPQDIQNDSALMDRLEQA
RGWAAVTLGLVDDARKARETSPNVPRVMMISAPRDYVAGDTPIKAADINLCVRQLAMQKPHKALAVTGAVCTAIACRIPG
SVVQEQLRGDTGSEIRLGHPSGALSVDSQVDQTPAGPRVRKAALNRTARLIMAGQLFIAREKIRQLMQRMR
>SEQF1086_CAE41225.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDKPRTAPVASLSPLSFDHDHRSKKPRAVGLTSVIDFGPDGFGWAGPASLRDYLRCVADYIDYAKIYALNALILPEEIVR
ETVRIYRDADIKPYAGGILFEYAYLKNELDGYIRHLKKLGMPRIEVSENYLDFGDDERMRHIETMQKHGFEVIYEFGRKN
PTEPFSLAQLERVIRSNVAMGVHHTIIEQSEIDCVSASNPAILKDIAARDWFRNIFIEADPYAFPKGHATLLEKFGDGVN
LANITADQVLRLQGFRYGVGRAVNYSILSRI
>SEQF1086_CAE41226.1 putative transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNNTRSAYEKIIKDLQGVGFSDYEAKTYIALLLTPNATAYEISKEAGIPKANCYSVLEALRKNGAVQAVSENPVKYVAVD
PNRYFNQMVELTQLRCEDLKESLKNIGHLPQEDLVWSLNDAAAVGLHIEKMIGSARDTIRIKAADTTLEPHLPSLKKAAR
RGVKVLIILFGEDVRPFELGKNCKVYLHEGNGIRVGISHKLITVTRDYKEALVAEVGRDAYGSYTENKPIVTLADSLLRH
EIYFAEIFSCFGDEIQEKFGPALVKLRESYLPADQADALKVFLETADPARLAGKATAA
>SEQF1086_CAE41227.1 putative fumarylacetoacetate-family hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQFVNLDHAGRAMAAVAHPHGYVLLPGPENGDSPELGERIRREEDLPALGAQALAAGTPLVAGSAAVLAPLLTRPGKIIC
LGLNYYDHAREGGRDKPTYPWFFLRAPSSLVAHGQAAWLPRVSGHFYYEAELAVVIGKRARHVMPEQALDMVLGYACFND
MSVRDYQKKTPQWTVGKNFDRTGGFGPALVLAGDLPPGGRGLGITCRVNGRTVQEANTDDMIFDVAEAIGIVTECMTLEP
GDVLVMGTPAGVGMARTPPLWLKPQDTVEVEIERVGRLCNPVLAEP
>SEQF1086_CAE41228.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNEACTPTEASLDSYRNAQAWYGPQLDKHPEYWVHHLTGPELEQLDRAVRRADAGGKDITELSQDDFELGELGQRLQHVK
HEVLHGRGLYLIRGVPVEQYTMRQSAIAFWALGTNLGLPVSQNGKGHVLGHVANLGLDYADAAVRGYQTSNRLPYHTDSS
DIVGLLCVRPAKAGGLSSVVSSTTVWNELAARHPEHARTLLDSFHRTRWGEIPEGQKPYSSSPVFAPYQGRMYANYVRSA
IRKAQALPSVPRLSAQQNEALDCLDALTCDPALYLDMDFKPGDVQLLSNFTIFHSRTAYEDWPETERRRHLLRLWLACEG
GPPIPEPLLRRNGLASNGRPNGIEVPGVKPNAPLVPQ
>SEQF1086_CAE41229.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLQRLFAVLLAASTHAAACAQTPTPAYPERTVRFLVPYTPGGNADMLVRLLSLKLTEYWDKPVVVENKPGASGTIAVNTV
AKAEPDGHTLVLGAAGNLVVANKLIKGLPYDPVEDLKAVSVVATPPFVLITAEQSRYQDVASLVADAGQRPEQITFGSAG
IGSANHLSGELLALMKRVKFTHVAYKGMGPALNDVVAGRIDFAFAPIPLVLPQIQAGKLRALAVSGTTRTQVLPDVPTVS
EAGVTGFESGAWFTVMVPKNTPDRIVDKINHDLKSAMQDADFIRKLAEEGAVPIGNTPAEASASLQSEMAKWGDLIDRLN
LQPI
>SEQF1086_CAE41230.1 LysR-type transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQKSAARGLGHIRIKHLRLLELVVQYGSLRKAAEGLHLSEPAASQMLREVESTFGVTLFERGRRGMRPNPFADVLVGRVW
VILRELHEMQADVAELEHRQGVSSDLGALPRCLHTLVPTTLVRLFGAGFRSRVRIAEGTSRQLLDALDQGAIDIAVTRLL
ESHAGLAGARNFDSAVLYEEAIAIVCSTDHPLSAVDTVTLDMLTQYDWVLPPSTSITGKLIEEEFVSAGLRPPVPKVEWL
TSASRLTLVQKSNFLGICPASVAAELQQGGRLHVLPVNPRVPLPPISVVWRRTKGDIAEIMDMKNALIECAAAMPGAMET
GAAVRAGEF
>SEQF1086_CAE41231.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLKPAPNSIFAILLRSSWWISAAIALVLIASALASTRPTFTAVLFFAALPFLVIAAMAAWKQRNVPSAARVERATNAAR
AMSWETFSKVLQEGLRQDGCEVTVLQGGPADYVLRRKNRLAVVGAKRWKASRVGVQALQELNAVRETHGAHDAIYVTIGE
ISAPALAYAKANQIQFMAEAELTRLLPQLST
>SEQF1086_CAE41232.1 putative CoA ligase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQAANIWPAIDAEAEIGDIRQWTTGAVLARRAERCPDRVFLRFAPDGRSYTFADLHRRTNGIAQAMIGYGIAQGEHVAML
SPNCPECLLGNLALGKVGAVSVPINTNAKASLLEYYLTHADCVTAIVADACMEAFAAVAPRLAQLRRVLVIGDAANARRM
LAGLPLAVEPFPADAASDEAVDNDVRFTDLAYLMFTSGTTGPSKAIMIPHGAAWHWGKHSVHYRYFLPEDVDYVCMPLFH
ANALLLSCTTAIVAGTSVVLDERFSASRFWERVRAFGVTRFNAIGAIGNFLWSQPASPVDLEHKVRICSLAPPPPFVHDF
ERRFGLRVIAGYALSDYGFGASLSPDAPPEKSLSLGRTCEGVAIRVVDEDDLTLPAGQVGEIVMRIEQPGAAPLGYYKMP
EATLAAWRNLWFHTGDRGYFDADGYLYLTDRKKDMIRRRGENISSYEVESVIALHPAVLQVAVYPLQSEHSEDEVAVTIM
LKDGQALDPDELVAFCQQQMAAHMVPRFVEFVDAMPLTPTNKIEKYKIKERAQADRSRLWDRERTPGARPGP
>SEQF1086_CAE41233.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHSGNRITRRSFMLAAGALGLALAGAAQAAAFPQRPVAMIVPFPAGTAVDVVARFLATRFTQQWNQSVYVENRVGADGLI
GTVAAKMAPADGHTILYTGPPFLFVPDLNPQADYDPLKDFRPVARVTAPVYMLAATKSAPYSTFREMVETAKRTGSQLDV
GTVGAHGTATAAGMARAAGVDINIINYKTTAQLISDSIAGHVPMVLSALGSLNTLTHNGSLKALAVSGPQRSIIAPEVPT
AMEAGAKDFSVVSWNSAFVRTGTPDAAVDAIAQAIHKATLSPDFIEFCRAQGLEPAFEDGQAWLKTLPAERSYLNGLLRQ
SGLLAAK
>SEQF1086_CAE41234.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQNSEQACGWQADPYALAYPESAPFWQAAETGTLLLPQCVRCECFHWHPRAFCPFCKAPDPRWTASSGQGEIFSFSVART
ATPYVVAYVRLAEGPLMLTNIVDCDPDSVRIGQRVSARFRPTQQGRLLPVFAPTHDHEKD
>SEQF1086_CAE41236.1 hypothetical protein BP0934 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQEYRLVVFTNPTQGMEDQFDEWYVNQHLPDVLAVPGFKAGQRFELEQEQLKAGPHPWRFMTVFDIETDDLRHTFDTLIS
RVNTPLMPMSPSIAEHRIAYAYKAVTPKVQATPHGQQPK
>SEQF1086_CAE41237.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRRHALKVLGAAALPALGWPMSAMAGEFPQKPIRFISPSPPGGVTDFLPRLLGQEMSKILGQPVVIENRTGGNQTIATN
YVAKAAPDGYTILLATSGALAVNPHLIADIPYQPLTDFEPISMLGGVASVVMATHASDARTLAQLLEAGRGKGRKPAFGH
TGIGTSPHLVLEALKQEAGIDIVDVPYKGTQQLFTDAKGGQFEFLCNNIGPSLPLIRNGDLRALAVTSRKRSPALPDVPA
IAETLPGFEVLGWMAAYVPAGTPADVIDRLAAALHASLATDEVRKALANFAIDAMPTSPQEAKDFLAAEYRRWGEVVRRS
GIRI
>SEQF1086_CAE41238.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNLKSLRHFCVVATELNLRRAAEQLHIAQPALSVSIAQLESRLGARLFVRGRRGVTLTEAGALLLPEAMQILRHAERLPF
LARDAASGDVGTLRLAFVGSAPYRLLPQALPQLQRAHPGVHVELYEATTDRIVEGLHNRTFDLGIVRYPLDAFPGLELEL
VDEDGFCVALPHDHALVAAGEISLRDLADEPLLLPPREHSPPLRALMLEGFQAQGIMPRIANHMATQTATVLALVEMGAG
IALVPQSIVGRVGYRVAFRPLAPGSRFRTGLALLSSPDHHTTLADHFRRAIRQSIG
>SEQF1086_CAE41239.1 phage-related protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKYPIAIEPGSDTRAWGVVVPDLPGCFSAADEGIDQAIENAKEAIELWIETAIDSGAPIPPATSIANHQANPEFANWIWA
IADVDPAVLDETVERVNITIPRRILKRLDDRARAAGESRSSYIAHLAMTA
>SEQF1086_CAE41240.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE41241.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDSKELIKQLERSGWTLRGVKGSHHVFTHPDRPGHISVPHPKKDLGIGLLNSILKAAGLK
>SEQF1086_CAE41242.1 putative sugar efflux transpoter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLLPIILLSAAGFTILTTEFLIVGLLPPLARDLQVTVSQAGLLVSLFAFTVAAAGPVLTALLANLERKRLFVWVLVLFGL
ANALAAVSPNIWVMAFARFVPALALPVFWSLASATAVELVGPAYAGRAISIIGFGIVAATVLGIPIGVLVSDAFGWRAAF
AVLTAVAWAKALLLAYFPKPRTGRQNQRLSTQLRILRDPRLLGHVMLSLLVFTGMFTAYTYLADMLEHLAGFDGKVVGWT
MMAFGGAGILGNWLGGRLVDRSPLGATILFSLIMTAGLLFVAQVMQAPYWLALALALWGVAQAALLTVCHVRVIKAAPQA
PAFAASLNISGANIGIGLGAAVGGHFIDSRGLASLGTVAAVIVLAAVGLAIALVLSRRPSTPRPAAPAPGIEP
>SEQF1086_CAE41243.1 putative phosphoglycolate phosphatase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSALILFDFDGTLADTAPDLAAAANRQRTRKGLEPMPYEALQPMASQGARGLLRAALGLLPDHPDYEPTRLQFLEDYAAE
STVHSRLFPGIADLLEDIAQRGLSWGIVTNKVTYLTLPIVEHLGLTRDSAVLVCGDTTAHAKPHPLPLLHAAEQAGFEAG
RCVYVGDDLRDIQAAHAAGMPAVAAAYGYVGMEEDVTTWQAEACAASPRELWSAIEPLLPTRATA
>SEQF1086_CAE41244.1 3-demethylubiquinone-9 3-methyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTATQSSAPGVNVDQAEVEKFSALAARWWDPESEFKPLHAINPLRLGWIQETAGSLSGKRVLDMGCGGGILSESMAVAG
AQVTGIDLAEKSLKIARLHGLESGVKVDYRAVPVEELAAEQPGQYDVVTCMEMLEHVPDPASVVRACAALAKPGGWVFFS
TLNRNPKSFLFAIVGAEYVLRLLPRGTHSYDSFIKPSELATSARQAGLEPTGMRGMEYNPITQVYSLSANTSVNYLMSTR
K
>SEQF1086_CAE41245.1 outer membrane protein A precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNKPSKFALALAFAAVTASGAASAQTVDNWRNPFGDVWKNGTNELCWRDAFWTPATGIPGCDGVPVAQKEKSAPMAAKVV
FNADTFFDFDKSTLKPEGRQLLDQVAQQAGTIDLETIIAVGHTDSIGTEAYNQKLSERRAAAVKTYLVSKGIDPNRIYTE
GKGELQPIASNKTREGRAQNRRVEIEIVGSRKN
>SEQF1086_CAE41246.1 DNA gyrase subunit A [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPH
GDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLP
SRLPNLLVNGSSGIAVGMATNIPPHNLQEVVDGCLYCLRNPECSIDELIELIPAPDFPTGGVIYGITGVREGYRTGRGRV
IMRAKTHFEDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKRGEVPEVVLNNL
YKNTQLQDTFGMNLVALVDGQPRLLNLKQLIEYFLQHRREVVTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAA
PTPPVARQELMARSWDSSLVREMLARVDGDAAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDK
IIGEYKDVMATIADLLDILARPDRITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITPMDMVVTLSHGGYI
KSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGE
KVTVVLPVKEFSEDHYVFMATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDEN
DVRPMGRNARGVRGMMLEEGQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGRVVGAVL
VMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLISVDDGSSLSGVRRVVESDADADDEDGGEEGGEEGGDQGGDDTG
AQGKDSEPTEPTE
>SEQF1086_CAE41247.1 phosphoserine aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMARPWNFSAGPSALPEAVLQQAAAEMLDWHGSGMSVMEMSHRGKHFVQICDEAEADLRELLGLPADYAVMFMQGGGLGE
NAIVPMNLMGRRSTPAADFVVTGHWSTRSHKEAGRYGDAQIAASAAEATEIDGQAQSSWTWLPPVDTWRVRKDSAYLHLC
SNETIGGVEFTEWPDPASLGAPDVPLVVDVSSHFLSRPLDIARAGLVFAGAQKNAGPAGVTVVIARRDLLGHALPICPSA
FDYANVAADHSRYNTPPTFAIYVMGLVFKWIKAHGGVRGMEEANRAKAELLYGYLDGSAFYRNPVQASVRSRMNVPFVLR
DESLNDAFLQGAEAAGLMQLKGHKSVGGMRASIYNAMPLAGVQALIDYLKEFERRHG
>SEQF1086_CAE41248.1 p-protein [includes: chorismate mutase and prephenate dehydratase] [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDDSLQDKLRPLRDRIDAIDAQILDLLSQRARTAQEVGSVKHAAHADGPVLRPEREAEVIRRLQYSNPGPFPKAAVAAVW
TEIMSACRGLERGMTVAYLGPQGSFSEQAALEHFGHSVQQLPCPSFDEVFRAVEAGQADVGMVPVENSTEGAVNRSLDLL
LNTPLTILGERSLVIRHCLMSQSGTMDGIKTISAHPQALAQCQGWLTRHYPDLNRVAAASNSEAARVAAEDPTVAAIAGE
VAAPAWNLRVVAAGIQDDPQNRTRFLAVGHIEPLSSGKDKTSLILAVPNRAGAVYDMLAPMAANGVSMTRFESRPARTGQ
WEYYFYVDVLGHRDDANVARALAALQAQVAFFKVLGSYPAQ
>SEQF1086_CAE41249.1 prephenate dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSANNSANGQGPLVPVLAVAGVGLIGGSFAAALRHAGQVGTILGVGRNPASLARARELGLIDEAVSPEEAAARADLVLLS
TPVGGLGAMLARMRDHLRPGCLLTDAGSTKSQVVMAARQALGEQVSCFVPGHPIAGGERTGPEAADAGLYVRRAVVLTPL
PENAAASVARVRACWHACGAHVVEMDDAAHDRLLASVSHMPHFLAAVYMAQVAGSDDAQARMDLAGSGFRDFTRIAAGSP
EMWRDIFLSNQAAMQSELAALRRVLDEAEQALGAGDGARLQALLERAAHARRNWRKDSK
>SEQF1086_CAE41250.1 3-phosphoshikimate 1-carboxyvinyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGLAYLDLPAARLARGEVALPGSKSISNRVLLLAALAEGSTEITGLLDSDDTRVMLAALRQLGVSVGEVADGCVTIEGV
ARFPTEQAELFLGNAGTAFRPLTAALALMGGDYRLSGVPRMHERPIGDLVDALRQFGAGIEYLGQAGYPPLRIGGGSIRV
DGPVRVEGSVSSQFLTALLMAAPVLARRSGQDITIEVVGELISKPYIEITLNLMARFGVSVRRDGWRAFTIARDAVYRGP
GRMAIEGDASTASYFLALGAIGGGPVRVTGVGEDSIQGDVAFAATLAAMGADVRYGPGWIETRGVRVAEGGRLKAFDADF
NLIPDAAMTAATLALYADGPCRLRNIGSWRVKETDRIHAMHTELEKLGAGVQSGADWLEVAPPEPGGWRDAHIGTWDDHR
MAMCFSLAAFGPAAVRILDPGCVSKTFPDYFDVYAGLLAARD
>SEQF1086_CAE41251.1 cytidylate kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAIFASAGAAPVITIDGPTASGKGTIAHRVAKQLGWDVLDSGALYRLTALAALRRGLPATDEPAVAAVAQALDVRFDGPH
VYLEGRDAGHEIRQEEVGNYASRIAAYPGVRQALLERQRAFRQPPGLVADGRDMGAVVFPDASLKIFLVADVEARAQRRC
KQLIEKGISANLDDLLRDMRERDARDTQRAVAPLAPAADAHVLDSSGLTIEQTVQAVLDFWCA
>SEQF1086_CAE41252.1 30S ribosomal protein S1 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDSNLMSSVSTSAILGGENFADLFAESLKSQDMKSGEVISAEVVRVDHNFVVVNAGLKSEALIPLEEFLNDQGELEVQPG
DFVSVAIDSLENGYGDTILSRDRAKRLSAWLQLEQALENGELVTGTITGKVKGGLTVMTNGIRAFLPGSLVDLRPVKDTT
PYEGKTLEFKVIKLDRKRNNVVLSRRQVLEASMGEERQKLLETLHEGAVVKGVVKNITDYGAFVDLGGIDGLLHITDMAW
RRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSLGVKQLGEDPWVGLARRYPQGTRLFGKVTNLTDYGAFVEVEAGIEGLVH
VSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKRGDKVRGAIKSITDFGVFVGLPG
GIDGLVHLSDLSWTESGEEAVRNFKKGDELEAVVLGIDTEKERISLGIKQLEGDPFNNFVATHDKGAVVPGTIKSVEPKG
AVITLSVDVEGYLRASEISSGRVEDATTVLKAGENIEAMIVNIDRKARSIQLSIKARDNAETAETIQRMSEASASSGTTN
LGALLKAKLDQQRNDG
>SEQF1086_CAE41253.1 integration host factor beta-subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRIGRNPKSGEQVLVPGKQVPHF
KAGKELREWVDLVGNDQGDDSSNGSSDPLQSVMDMHAMH
>SEQF1086_CAE41254.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRYLVWALRLLVFVAVLMFALKNTNPVAVTFYADYVVHDVPLIVVMLVVFVVGALFGLLLTVPAAMRRRREALRLRREVE
RLQAAASGTPPAVTPEAVAPMSPL
>SEQF1086_CAE41255.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDFEPWWLIFVPVLFALGWLAARFDFRQMLRETRTLPDSYFRGLNFLLNEQPDRAIDAFVEVAKLDPETTELHFALGSLF
RRRGEMERAIRVHQSLLSRSDLPVAEREHAQHELAQDFLKAGMLDRAEGAFEQLKDTRYALPALRSLIRIYESEHDWPRA
IEAVKTLHGLVDEPVPQIVHYYCEQAQAALTAKPVDFDAAHAALDAADHAAGMVERGNAPAKASLVRTAMLRARLAALEN
DPKRERLYLESILTQAPEFAGLVAEALLTNYRQADQAAAGLAMLQQQYQRHASLDLFNVVFRELRVQQGSAPAWAFAREA
LRHHPSLLGLDRLLEAELASPGAPADAGPVTGADLTLLRSLIHKHTQRLDRYACRSCGFQARRFYWQCPGCNSWETYAPR
RLEELE
>SEQF1086_CAE41256.1 ADP-heptose synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNQYPAERIARARVLVVGDVMLDRYWFGEVDRISPEAPVPVVRVARREDRLGGAANVARNVAALGAQVTLIGVVGADEVG
LRIERMAAEEGVRTDLVSDTEHPTTLKMRVLGRQQQLLRVDFEQHPEPAALDGISAAVARQLAQHDIVVLSDYAKGVLDR
VESIIAAAVGHSLPVLVDPKGDHYERYRGATLVTPNRAEMREAVGRWKTEDELAERAQRLRLDLDLEALLVTRSEQGMTL
FTDAGRDHADAAAHEVYDVSGAGDTVLATLAVMRAVGLSWGDAMRWANRAGGIVVGKLGTSVVTAAELAGEST
>SEQF1086_CAE41257.1 ADP-L-glycero-D-manno-heptose-6-epimerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIVVTGAAGFIGSNLVRGLNRRGIQDIIAVDDLTDGDKFRNLVDCSIADYLDKDEFRERVRGGNLPALRAVLHQGACSDT
TERNGRYMLDNNYRVTLELFEYCQAERVPFLYASSAAVYGGSSVYVEDPANEHPLNVYGYSKLLFDQVLRTRMDSLTAQV
VGLRYFNVYGPHEQHKGRMASVAFHNMNQFLAEGHVRLFAGWDGYEDGGQSRDFISVEDVVAVNLHFLDNPDQSGVFNCG
TGRAQPFNDVAAAVVNTLRAERGEAALPLAELVKKGLLRYIPFPDDLKGRYQSYTQADVSRLRATGFSAPMRDVQTGVSE
YVRYWRALK
>SEQF1086_CAE41258.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNPFLHDPVARCANAPAWPLVGRGRPWRPRPPGAAARAPAGKAPVGRKPASEPLARWLVMAGCALAAAPAHALDVNTATV
DQLETVRGVGPRTARVIIEERQRGGRFLSLEDLSERVSGIGHKKMQSLQAAGLTAGPAAPAAGARPEARPAGGPRAKAAA
GR
>SEQF1086_CAE41259.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41260.1 cysteine synthase B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTPTYPTIEQTVGNTPLVRLQRIPGAAGQARGNVILAKLEGNNPAGSVKDRPALSMILRAEERGEIHPGDTLIEATSGN
TGIALAMTAAMRGYRMVLIMPDNLSLERRAAMTAYGAELILTPAAKGGMEYARDLATAMQAEGKGKVLDQFGNPDNPRAH
IEGTGPEIWNQTDGRVTHFVSAMGTTGTIMGVSTYLKSRNAAVQVVGAQPAEGSQIPGIRKWPEAYMPKIFDRALVDAYE
SIAQAEGETMARRLAAEEGIFAGISSAGALVAALRVAERVENATIVFIVCDRGDRYLSTGVFN
>SEQF1086_CAE41261.1 membrane-bound lytic murein transglycosylase B precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFNCRRFLQIGTLSALLAGCATSSQTPQAQHLPAQAATGQADRVRIGPDKPVSSDEGPATLTPTGELRPDVRAFAEQLAA
QRELPLPQVLASLESTRYNATVARLIAPSGASGKKIWRSWLTYRGRFVEPKRIAWGVEFWNANQDLLNRAAQRYGVPASI
IASIIGVETLYGRNVGNFRVVDALATLAFDYLDPAKPERADMFRGQLGDFITLALQDKLDPETRGSYAGAIGMPQFMPGS
IMRYAVDGDDDGHIDLTNSVADAVMSVGNFLVEHGWQRGLPVFAPVALPADPAPLVAGGLTPTLDWNGLQAAGARPAAGA
GRGAWQEHPMGIVDLVEEARGTVQYRTATPNFFALTQYNRSYFYATAVADLAAELQARTGY
>SEQF1086_CAE41262.1 histone deacetylase family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
METMYLTHPSCRLHEMGDWHPESPQRLDAISDQLLASGLLPYLQERQAPEASRADILRVHTPAYLDSLRAHQPEHGYYAI
DADTSMNRHTYEAALRAAGAGVAAVDAVLGGEAITAFCSVRPPGHHAERDHAMGFCFLNNVAIAARHALDFHGLQRVALV
DFDVHHGNGTEHAFAGDPRVLMCSFFQHPFFPNSGADDPAPNMLNVPVAAYTGGASIRTIVREQWLPRLHAHRPELILIS
AGFDAHREDDMAQMGLVEADYAWITDRLVEVADQHCQGRIVSTLEGGYNLSALGRSVVAHIRSLSKL
>SEQF1086_CAE41263.1 electron transfer flavoprotein beta-subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKVLVPVKRVVDYNVKVRVKSDQTGVDIANVKMSMNPFDEIAVEEATRLKEKGAVTEVVAVSCGAAQCQETLRTAMAIGA
DRAVLVQTDAELQPLAVAKLLKALVDKEQPQLVILGKQAIDDDANQTGQMLAALLDWPQATFASKVELGDGQVTVTREVD
GGLETLSLNLPAIVTTDLRLNEPRYVTLPNIMKAKKKPLETVSPQDLGVDPAPRLKTLKVSEPPARQAGIKVPDVATLVD
KLKNEAKVV
>SEQF1086_CAE41264.1 electron transfer flavoprotein alpha-subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTLVIAEHDNAQLKGATLNTIAAASRLGGEVHVLVAGSGAQAVAEQAAQAARVSKVLLADAPQLAEGLAENLAAQVLAV
AGGYSHILFAATASGKNVAPRVAAKLDVAQISDIIGVESADTFQRPIYAGNAIATVQSGDAVKVITVRTTGFDAVAAQGG
SAAVEALDAVADSGLSRFVGREVAKSDRPELAGARVVVSGGRGLGSAENFKILDPLADKLGAALGASRAAVDAGYAPNDW
QVGQTGKIVAPQLYVAVGISGAIQHLAGMKDSKVIVAINKDPEAPIFGVADYGLVGDLFQVVPELTGAL
>SEQF1086_CAE41265.1 probable acyl-CoA dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTYATPLQDFRFALNELAGLEEILKLPGFEEVTPDLVDAILEENARFVQQAIAPLNVAGDTKPPVWNDGQVTTTPGFSQG
FADYTAGGWQGLQHPQKWGGQGLPKVVAAPAGENIQAASLAFSLCPMLTDGVIEALLTVGSEAQRQTYVPKLIGGQWTGT
MNLTEPQAGSDLAQVATRAVRQDDGSYRLSGQKIFITYGEHDLAENIIHLVLARTPDAPAGVKGISLFIVPKYLVNEDGS
RGKRNDVWCASLEHKLGIHGSPTAVLLYGAGKGEVGEGAVGYLVGEANRGLEYMFIMMNAARYSVGQQGIGVSERAYQHA
QAYARERVQGRAIEGSAAPVTIAHHPDVQRMLLTMRALTEAARAVSYVAAAAHDKGTHHPDAEVRARNRAFYEYLVPIVK
GFSTESAVEVASLGIQVHGGMGFIEETGAAQHYRDARILPIYEGTTAIQANDLVGRKTLRDGGATAHASIAAMRDTLKAV
AAEAQRADTADHTALRVLRDNFDQAIQSYEGAVEFILAHAASNVRAVYSSSVPYLMLAGVVHGGWQMARAALACRRHLAA
GSGDAFHRHKLGTALFYGAHILPRALALAAAVRAGDVADSCGSMADIA
>SEQF1086_CAE41266.1 antioxidant protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGQLRLGDTAPDFEQKSSIGPLRLYDYLGDSWGVLFSHPADFTPVCTTELGYTAKLAGEFAKRNVKVLALSVDPVDSHTK
WIDDINDTQSTTVNFPILADDDRKVSELYDMIHPNANATLTVRSVFVIDPAKKVRLTITYPASTGRNFDEILRVIDSLQL
TDSHSVATPVNWKDGEDVIIVPSLKDEAVIKEKFPKGYKALRPYLRITPQPNK
>SEQF1086_CAE41267.1 sulfate-binding protein precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPRNTAGIRGAIVALATVFSLGLPWAVQAQDKQTLLNVSYDPTRELYRAVDEAFIKEYQARAGVDLTVRQSHGGSGRQAR
SVIDGLDADVVTLALAYDIDAIADRGLLPQDWQKRLPRNSSPYTSTIVFLVRKGNPRQIHDWDDLVKDGVQVITPNPKTS
GGARWNYLAAWAYALARNEGSEAKAREFVGQLLSHVPVLDTGARGSTTTFVERGVGDVLLAWENEAFLAREELGPDKFDI
VVPSLSILAEPPVAVVDKVVDRKGTRAAAQAYLEYLYTPAAQEIIARNFYRPTDAGVAAKYASRFPKLKLVTIDDPIFGG
WRKAQKDHFSDGGTFDQVYQPQRK
>SEQF1086_CAE41270.1 sulfate transport ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSIEVRGLSKRFGAFRALDEVSLHIETGELVALLGPSGCGKTTLLRIIAGLESADAGSVLFAGEDATEVDVRQRQVGFVF
QHYALFKHMTVFENVAFGLRVRHRSQRPSEARIRAKVLDLLGLVQLDWLADRYPAQLSGGQRQRIALARALAVEPRVLLL
DEPFGALDAKVRKELRRWLRRLHDELHVASVFVTHDQEEALEVTDRVVLMNAGRIEQVGSPREVWERPATPFVYGFLGDV
NQLHGHATRGVWRLGEVALPAPDLPEADNQRAIAYVRPHDIDLARAGTAAPGIPVRLNHVYLAGPSAYLELARQDDQAII
EAQVPEPLFRSLGLKEGEALLAQPRRARVFAVQP
>SEQF1086_CAE41272.1 sulfate adenylyltransferase subunit 2 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAVMTRSHLDWLESEAIFILREVAAECARPALLFSGGKDSVVLLRLAEKAFRPGRFPFPLLHIDTGHNYDEVISFRDAR
AAELGETLLVRSVEDSIARGSVALRRETDSRNAAQAVTLLEAIEELGLDACIGGARRDEEKARAKERIFSFRDEFGQWDP
KAQRPELWNLFNTRVHRGENMWVFPISNWTELDVWQYIQRERLALPSIYYSHTREVVRRKGLLVPVTRLTPPAEGETVEQ
LAVRFRTVGDISCTCPVASDAADPAAIIAETAVTDITERGATRMDDQTSEASMERRKREGYF
>SEQF1086_CAE41274.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRGRGAVTNVPHRFQQADRVRVDDGWANPDYTAGSDAAALPSVAEALGQGGRRAIPIAVEGADASPNTCAQAPAPRTIVQ
AEEARKMLSRNDSPDIPFDVAANPYRGCEHGCVYCYARPTHAYLGYSPGLDFETRLVAKANAVAALRAELARPGYRASPI
NIGSATDAYQPIERTWRLTRGMLELLLQTRHPLTVVTKNALVERDLDLLQDLARQKLVTVFVSITTLDAAMARTLEPRAS
APYRRLQTVRTLAQAGVPVGVLVAPVIPFINDESLEHILQEASAAGACYASYTVLRLPWEVKEVFETWLQAHFPDRAQRV
LHRIEDLRNGRRNDTAFGSRMRGTGIWADLLRQRFALATRKLDLNRHRPELDTHRFVPPLEPGLPPARGRREARAQPGQL
ALF
>SEQF1086_CAE41275.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPGRTLGALRRLARAWAGAAVPQRKWPFPPTPPGQAQPCTPCTDSQPRSVQAVQPAQARALHAQAELSGAATQAATQVLS
TKAKIIDVLLVAVWGAMIPALMWLGAAGGF
>SEQF1086_CAE41276.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSYTSLILVVLAAMAHAAWNLLAKRAAMVGPMFVFAYGLAATILYAPWVIWVLAHDGMVWSWPVVLCILASSMLHLGYSL
CLQRGYQVADLSVVYPIARGTGPLLSTMGAFTLLSEPTTTTGIAGMLCVVGGVLLIATQGRLGMFRQAQAWIGVRWGVVI
GLFIAAYTVVDAYGVKILLIMPVLFDWFTCATRTLMMTPHVLRRRAQYWPAMRGYWHLAIAVGVLSPLGYILVLYALRNG
APLSLVAPAREMSMMLGTLAGMFLLREKVGIGRLAGCLAILAGVVLLGSS
>SEQF1086_CAE41277.1 50S ribosomal protein L19 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNLIAILEQEEIARLTGGNAVTEFAPGDTVVVSVNVVEGTRKRVQAFEGVVIAKRNRGLNSSFIVRKISSGEAVERTFQL
YSPQIAGIEVKRRGDVRRAKLYYLRSRSGKSARIKEKLVLKKAKSA
>SEQF1086_CAE41278.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAQPWETANQGLARVDERLLTPPELRSSLRPADHWRLDPLCAAEPRAPGREGSLVAAAVLIPLVMRADGVRVMLTQRAAH
LHDHAGQVSFPGGRIEVSDATPVAAALREAQEETGLPVQQVEVLGSMPQYFTATGFAITPVVSLVQPDFELAPDAFEVAE
VFEVPLSFLMDPANHRLYRAALPDGYVRQYYAMPWQRYFIWGATAGMLRNLYQTVREALPG
>SEQF1086_CAE41279.1 probable oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKYRKLGHTDLDVSLIGLGTMTWGEQNTEAQAHEQLDYALAHGINLVDAAEMYPVPPKPETQGRTESCIGSWLARTGRRH
EVVLASKAAGPVRDAKRPSHIRDGKTFLDRKNLTQALDASLKRLQTDYLDLYQLHWPDRTTNTFGKLAYPWVDDAHTVPI
EETLEVLQDFVRAGKVRHVGLSNETPWGVARFLQAAEKHGLPKVATIQNPYNLLNRIFEIGLAEFSHREGVGLLAYSPLA
MGILSGKYLDGARPEGSRLALFTRFTRYSNPQAEAAARDYVMLARDHGLAPAQMALAWVNQRPFVSSNLMGATTLAQLKE
NIESVEVTLSDEVLQGIEAIHARQPNPAP
>SEQF1086_CAE41280.1 transposase for IS1663, partial [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
DPVCTRQVGAVADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAI
LEPTGLYHEQAATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREA
LSKDLLRELNRKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAV
MHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALG
AAMRKLVHLCFGVLKNRIPYQPNYAMNG
>SEQF1086_CAE41282.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTPIPLARGWLPAAPSTLDPLRKYWLFRPGALTAGLRQLGHVRLRVLAEYPTGAPRDEADGMRIAAQSPVWVREVLMSI
DGVDSVVARSLTPLRASHGVWQGMRRLLTRPLADMLYHDPGIHRSVFVCRRLAAGVPFHATAIARAPAGGPEPALWARRS
AFWRAGQPLLVAECFLPAFWSLARAPVAPR
>SEQF1086_CAE41283.1 putative RNA pseudouridylate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEKVRISKLMSERGLCSRREADSYIERGWVRVDGVVVSELGARALPDQVITLERAAAARQTARVTILLHKPVGYVSGQAE
KGYTPAVALIDARSRYAGDRAPQRFERGQLQGLAVAGRLDIDSQGLLVLTQDGRIAKKLIGEDSEVDKEYLVRVQGRLSE
AGLALLNHGLSLDGKPLRPAQVRWQNADQLRFVLREGKKRQIRRMCELVGLRVVGLKRVRIGRVSLGDLPAGQWRYLRAD
ERF
>SEQF1086_CAE41284.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRLQGMELFVEVARTLSFGRAAENLAIPKSTLSRQVAELERSVGLRLLSRTTRRVELTEAGQLYFERCQRIVAEARIAH
EELQNLVETPSGPLRVNMPADFGTDFLSEAFTEFSRRYPEVTFYLDLASPEHAERVFQTCDVSIEIGDLPDSTHIARLLG
VLPAHLYASPDYLARHGEPQHPDDLPRHECIQFRAGTGRVTRWPLNSGERHVEITPGNRFSVNSVSMVRNLATLGAGIAI
LAPMGNVREDIESGRLKRILPDWLAGPFPVYAVTDTRMLPAKTRIFVEFLMERLSNKTLAGQNNPAFLNLR
>SEQF1086_CAE41286.1 acriflavine resistance protein B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAKFFIDRPVFAWVIAIVLMMAGALSILSLPVAQYPNIAPPAISINVTYPGASAQTVQDTVVQVIEQQMNGIDNLQYISS
ESNSDGSMSITLTFSQGTNPDTAQVQVQNKLAVAQPLLPLEVQQQGIRVTKATKNFLIVAGFVSTDGTMDKSDLADYVAS
YIQDPISRTPGVGNFQLFGAPYAMRIWISPEKLVNFGLTASDVTTAIREQNVQVSSGQLGGQPAVRGQQLNATVIGPSRL
QTPEAFGRILLKVNRDGSQVRLKDVASIELGAQTYAIDSYYNGKPASGLAIKLASGANALDTAQAVRETINGLKPYFPPG
MDVVYPYDTTPFVSLSIEGVVKTLFEAVLLVFLVMYLFLQNVRATLIPTLAVPVVLLGTFGVLAAFGYSINTLTMFGMVL
AIGLLVDDAIVVVENVERVMAEEGLSPRQATRKSMGQITGALIGIAMVLAAVFVPMAFFGGSTGVIYRQFSITIVSSMVL
SVVVAIVFTPALCATMLKPIPKGHHGSKKGFFGWFNRTFERSSQAYANNVARSMGRTKRLLLIYVVILLGMAWMFMRIPT
AFLPDEDQGILFAQVQAPAGATSERTQATIDAAVKYLLEDEKESVASVFAVNGFSFGGRGQNAAILFIKLRDWNERKGAE
HRAAAVAARANAKFRAELRDAQAAVFAPPAVMELGNATGFDFQLQDRAGVGHEKLLAARNQLLQEAGASPMLVAVRPNGI
EDAPQYQLDIDREKARALGVSITEINNTLATAWGSSYVNDFIDRGRVKKVFVQGEASSRMLPQDLDKWYVRNNAGDMVPF
SAFSSAQWTFGPQKLNRYNGVPSYNIQGQAAPGYSSGDAMAEMERLADKLPLGIGYDWTGLSFEERLSGAQAPALYAISL
IVVFLCLAALYESWSIPTAVMLVVPLGVVGALLATMTRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKEHYEEGASLTE
AAVHAARQRLRPILMTSLAFILGVVPLAISTGAGSGSQNAIGTGVIGGMLTGTFLAIFFVPLFFVLTLRLFKVKRASENR
EDDDPHGGAQPATHGGQPQ
>SEQF1086_CAE41287.1 probable outer membrane lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPVVMRTLLSLAVATALAGCSLAPTYERPQAPVDAAYPSGPAYGAPGQAAAGAPAAADVGWRDFFGDPLLQELLALSLA
NNRDLRVAALNVEAARLNPSGQAGISRSYQVGASLSTWELDLFGRIRSLSEQALQLYLAQDETRLATQLTLVAETANAYP
TLRADQELLALTRQTLAAQQESYKLTRQSYDLGVATELDLSQAEISLRTAERNLSQYTRMAAQDRNALVLLVGQPLPAGI
GAQLDQAVALPDGVVLADLPAGLPSDLLARRPDIRAAEHQLQAANASIGAARAAFFPRISLTGSAGTASASLGGLFDAGS
GAWSFAPQISVPIFAGGALRASLDLAKIQKDIGIARYEQAIQSGFREVSDALAGRGTLQEQIRSQELLVQANQRAYDLSQ
QRYQQGIDNYLSVLDSQRSLYTAQQTLVETRLARLSNLIQLYKALGGGWSERTVAAAQAG
>SEQF1086_CAE41288.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNIIIMIIVGFVVGLITRAIMPGDQNMGYIMTTILGIIGSVVAGFLGQQLGWYAPGEPAGWIGSVVGAIIVLFVVGLVAK
KRA
>SEQF1086_CAE41289.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYSPLSGRAWRGLLLAMLMLLAACSERSADWSLYNVKGHLPDLKFSLPGAHGKTVSSDDLKGKTVLLFFGYASCPDVCPT
TMAQLTAVLQQLGEQARDVRILFVSVDPHRDTPDILQAYVNEFNSNAIGVTGNEKQIADLARRYRVAYQIEKPKPGDDAD
IYDVTHSRGVYIFDNQGKARLLASDTDTIDTMVKDLRQLIAQTQ
>SEQF1086_CAE41290.1 oligopeptidase A [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQNPLLAPVADLVDYAAVKPEHIVPAVQALVDIARAAVEHAADPALPATWDAVVAPLDSASERLWRAWSVAGHLNAVVN
TPVLREAYNAALPLVTEFSTWVGLHEGLYRQYQRLQAAEDFAAWPPVRRRVVELALRDFRLSGVELQGAARERYAEISDR
EAQASQKFSENVLDAIDAWSLLVDDQARLDGIPADVLAAARKAAEDDGATGWKLTLKMPCYLPVMQYARDRALRETLYRA
YGTVASEHGDAAYDNSPLIEELLQLRADEAGLLQYPTFAALRLQTRMARDATEVVDFLRDLARRAKPYAERDLAELQAFA
AGELGLAELQPWDVPFAAERLRESRYAYSEDEIKQYFTEPRVLAGLFEVIETLFDVRLREVPVSSWHADVRGVRVESPDG
ATLGHLYLDLYARAGKQSGAWVDSERSRRRVQGDLQTPVAYLTCNFSRPNGDKAALLTHDDVITLFHETGHALHALLSEV
DEPGAAAFASVEWDAIELPSQFMENFCWEWSVVQKLSAHVETGQPLPRDLYDRLVAARNFQSGMQTVRQIEFALFDMMLH
DRPQGAPIADVLALLQQVRQEVAVLFPPAWHRLPHSFSHLFAGGYGAGYYSYKWAEVLSADAYEAFEEAARQGEPAATTL
DGATGARFRKEILAVGGARPAADSFRAFRGREPRIDALLRHSGMQA
>SEQF1086_CAE41291.1 FolD bifunctional protein [includes: methylenetetrahydrofolate dehydrogenase and methylenetetrahydrofolate cyclohydrolase] [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTARIIDGAALSQRIREEVAQRVQALTAKGVRPGLAVVLVGDDPASQVYVRNKVAACEKAGLHSVKEQYPADLTEAQLLE
RIDALNRDPSIHGILVQLPLPRHMDAHKVIEAIAAEKDVDGFHISNAGLLMTGQPLFRPCTPYGVMKMLESEGVALRGAE
AVIVGASNIVGKPMAMLLLQAGATITICNSKTRDLGAQTRRADVLVVATGKPGMIDGSMIKPGAVVIDVGINRGADGKLC
GDVDMASAREVAGAISPVPGGVGPMTIAMLLVNTVEAAERAAA
>SEQF1086_CAE41292.1 two-component response regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTPHLSSTVFIVDDDEAVRDSLRWLLEANGYRVRAYASGENFLDEYDASQIGVLIADVRMPGMSGLELQEQLIARNAPL
PIVFITGHGDVPMAVSTMKKGAVDFLEKPFNESDLREIVARMLEQAVQRISKFQAQKDHEAMLARLTAREQQVLERIVAG
RLNKQIADDLGISIKTVEAHRANIMEKLEVTTVADLMKVALAKPEAHT
>SEQF1086_CAE41293.1 tw-component sensor kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSPPKSNIPMSFRDHARARRRGVYWLTPALVLVLYICVMGVFFWLQRIHDDSVMFVTIDQELRQQRLIWVVLALSCVIV
ISLLMLWRYTRFRSEAEAALIAETGFRRAMENSMSTGMRVLDMEGRIAYVNPAFCRMIGWNEADLIGRSPPFPYWVPGRH
DQHQHTLEVLTSGKTPSSGLEVEAQRRDGSRFTARMYVSPLLDPNGDQIGWMTSMTDITEPKRIREALTAAHERFMTVLE
GLDDAISVTADTHDGLELLFANRTYRRVFGAQTGGHDELLAGRRGRFTDESVEVFAPSVQRWFEVHHRMLAWTDGRRVRM
QVARDITERRVHEEASRVQQEKIQLTSRLTTMGEMASSLAHELNQPLTAIANYSMGAVALVKAGHTSPNMLLPALEKAAS
QAERAGKIISRIREFVKRSEPRRQRVAISRIVDNAIGFAEIDARKRRIRIERFVPSNAPDVLADPILIEQVLLNLLKNGL
EAMEKSESDELKVAVIPHEQHIEVAVVDRGHGLPEPERLFEPFFSTKSQGLGMGLNICRTIIESHHGRLWADPNPAGGTI
FRFTLPCATPQSQAQNDQSEELHA
>SEQF1086_CAE41294.1 pyruvate dehydrogenase E1 component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSFAQAGALAAANDEDTLETQEWLEALAAVLDREGPQRAHYLLERLIDEARRSGAHIPFSPNTAYVNTIPPGLEPAHPG
NLELEARIRSYVRWNAMAMVVRANKHNPPDGGDLGGHIASFASLATMIGCGQNHFWHGETEEHGGDLVYFQGHTSPGMYG
RAYLEGRLTEDQLNHFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPLMAIYQARFLKYLHARGIADTSNRKVWVFCG
DGEMDEPESLGAIALAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGDFRGSGWNVIKLIWGGYWDPLLAHDKEGI
LRRIMEEAVDGEYQAYKANDGKYVREHFFGKHPKLLEMVARMSDEDIWRLNRGGHDPHKVYAAFDAASKHAGQPTVILAK
TIKGYGMGHVGQAKNPTHQQKKLELDSIREFRDRFGIPIPDDKLEELPYYKPAEDSPEMQYLHERRKALGGYLPKRRAKA
DEQLKAPALDAFKAVLEPTAEGREISTTQAFVRVLNQVLRDKDLGPRVVPILADESRTFGMEGLFRQIGIYAPEGQKYTP
VDKDQVMYYKESADGQLLQEGINEAGAMSSWMAAATSYSTNNRIMVPFYIYYSMFGFQRVGDLAWAAGDMQARGFLLGGT
AGRTTLNGEGLQHEDGHSHLLASTIPNCVSYDPTFAHELAVIIQHGLKRMVEDQENVYYYLTVMNENYPQPGLTAGDEEG
IIRGMYKLKSHGKGKQRVQLMGSGTILCEVMAAQELLEADWGVASDIWSVTSFTELRRDGLDAERHNLLHPEGKQQVPYV
TTQLAKSDGPIIASTDYMKLFADQIRPFVPKDRTYKVLGTDGFGRSDFRYKLREHFEVDRHFVVLASLRALADEGKIPAA
KVAEAIKKYGINPNKANPHHA
>SEQF1086_CAE41295.1 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNIVEIKVPDIGDFKEVEVIEVLVSAGDTIKAEQSLITVESDKASMEIPASAAGVVKSVKVKVGDKIAEGTVILEVEAA
GEAAAAPKAEAPKAEAPKAEQAAETPKADAAKAEAPQAQAAQAEAPAAAGPIEVKVPDIGDFKEVEVIEVLVAEGDTIKA
EQSLITVESDKASMEIPASAGGVVQSLKVKVGDKVAMGTVIAVVQGQGAAAAPAAAEPAAPASPVAPASAPAQRPAPAAA
LQDEDLKPGQLPHASPSVRKFARELGVNLSRVTGSAAKGRITADDVRAYVKQALSAGAPAGASGGGDGAALGLLPWPKID
FTKFGPIEAKPLSRIKKISGANLHRNWVMIPHVTNNDEADITDLEALRVALNKENEKSGVKVTMLAFLIKAVVAALKKFP
EFNASLDGDNLVLKQYYHIGFAADTPNGLVVPVVRDADKKGILELARETSELARKAREGKASPAEMQGGCFSISSLGGIG
GTHFTPIINAPEVAILGVSRSAHKPVWDGKQFVPRLTLPLSLSYDHRVIDGASAARFNAYLGQLLVDFRRIAL
>SEQF1086_CAE41296.1 dihydrolipoamide dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNIVEIKVPDIGDFKEVEVIEVLVAAGDTIKAEQSLITVESDKASMEIPASSAGVVKSVKVKVGDKVAEGTVILDVEAA
GEAAAAPKAEAPKAEAPKAEAPKADAPKAPAAKASAPAAAAYSGSADLECDMLVLGAGPGGYSAAFRAADLGMDTVMVER
YATLGGVCLNVGCIPSKALLHNAAVIDEARALAAHGISFGEPKVDLDKLRGYKDSVVAKLTGGLAGMARARKVRVVTGTG
EFADPHHLTVTDGEGKKQTIRFKQAIIAAGSQSVKLPFLPDDERIVDSTGALQLRAIPKKMLIVGGGIIGLEMGTVYSTL
GARLDVVEMLDGLMQGADRDLVKVWQKMNAPRFDNIMLKTKTVGAEARKDGIYVSFEGEGAPKEPQRYDLVLQAVGRSPN
GKKIGAERAGVAVTERGFIEVDRQMRTNVPHIYAIGDVVGQPMLAHKAVHEGHVAAEAAHGEKSYFDARVIPSVAYTDPE
VAWVGLTEDEAKKQGVKVEKGLFPWAASGRAIANGRDEGFTKLLFDAETHRIVGGGIVGTHAGDLISEIALAIEMGADMV
DIGKTIHPHPTLGESVGMAAEVAEGVCTDLPPMRKK
>SEQF1086_CAE41297.1 flagellin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAVINTNYLSLVAQNNLNKSQSALGSAIERLSSGLRINSAKDDAAGQAIANRFTANVKGLTQAARNANDGISIAQTTEG
ALNEINNNLQRIRELTVQASNGTNSASDIDSIQQEVNQRLEEINRIAEQTDFNGIKVLKSNATDMTLSIQVGAKDNETID
IKIDRNSNWNLYDAVGTVPGGTVNGEARTVNALGFDVLSAVTTTIASDTVTFDAAVAAAEQAAGAAAGDGSVVSYGDAAN
PQYAVVVDNAGTLTSYALTFDKDGKAALGDQLGAVASQAAEAAVGVNDVASGDNVTVSGGNANALSKLDDAMKAVDEQRS
SLGAIQNRFESTVANLNNTITNLSAARSRIEDSDYATEVSNMTKNQILQQAGTSVLAQANQVPQNVLSLLR
>SEQF1086_CAE41298.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE41299.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLPRFYCDARLAPGECVALPEALAHHAVRVLRLRAGAALVLFDGAGGEYPATLEIEGKAAWAQLGAHVPREAELPGRIT
LVQGLPAGDKMDWVVEKAVELGAWRVSPIAAQRSVLQLNGARAEKRLAHWQRIAQAAAEQCGRNRLMAVDAPQALAAWLA
QAPGAALRLLCHPEAELDLAGALARHAAHDDICLLVGPEGGWSDEELEQARAAGVQAVRFGPRVLRTETAGIALIAAVSA
IRGWNG
>SEQF1086_CAE41300.1 transketolase 1 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNPTAPKLALADAIRVLAMDAVQKANSGHPGAPMGMAEIAQALWLGNLRHNPADPAWANRDRFVLSNGHGSMLIYALLH
LTGYDLPLEELKNFRQLHSRTPGHPEVGITPGVETTTGPLGQGLANAVGMALAEALLAAEFNRAGHTVVDHHTYVFLGDG
CLMEGISHEACSLAGTLKLSKLVALYDDNGISIDGHVEHWFADDTATRFEGYGWNVIRGVDGHDVAAVDAAIKQARAQSE
KPTLIVCRTVIGKGSPNMAGTHNVHGAPLGNDEIAATRAALGWSAGPFEVPQDIYAAWDSRPAGALAQAAWEDKFQAYAA
QYPAEAAEFTRRMKGELPEGFAARFEAFLQATVAKGETVATRKASQFAIAELAGLLPEMLGGSADLTGSNFTDWKGVAPL
RAGHHGVHFGRHINYGVREFGMAAIMNGIALHGGYLPFGGTFLTFSDYSRNAIRMAALMKQRVVHVFTHDSIGLGEDGPT
HQSIEHAASLRLIPNLSVWRPCDTVETAAAWGAAVTRPASIGMDLHDGGPTALLLSRQNLPFVARDEATQKAIVRGGYVL
RDAHDARAAIIATGSEVAIALAAQELLAADGIAVRVVSMPSTDVFDRQDAEWKREVLPAGMPRVAVEAGVTAFWHKYVGL
EGAVVGIDRYGESAPAGALFKFFGLTAEKVAEAVKQVL
>SEQF1086_CAE41301.1 glyceraldehyde-3-phosphate dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTIRVVINGYGRIGRNILRAHYENGKKHDIEIVAINDLGDPKTNAHLTRFDTAHGKFPGTVTVDGDYMVVNGDKIRVLAN
RNPAELPWGELGVDVVLECTGFFTSKEKAGAHLKGGAKKVIISAPGGKDVDATIVFGVNQNVLKAEHTVISNASCTTNCL
APLVKPLHDKLGVETGLMTTVHAYTNDQVLTDVYHEDLRRARSATMSMIPTKTGAAAAVGLVLPELNGKLDGFAIRVPTI
NVSLVDLSFVAKRDTTVEEVNSILQAAAEGELKDILTYNTEPLVSIDFNHNPASSNFDATLTKVSGKLVKVSSWYDNEWG
FSNRMLDTTVALMSAK
>SEQF1086_CAE41302.1 phosphoglycerate kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNVNTLSALAKSGALSGKRVFIRADLNVPFDDAGRISEDTRIRASVPGIRLALDAGAAVMVTSHLGRPKEGALTEADSL
APVAQRLSELLGMQVRLVPDWVDGVSVEPGEVVLLENCRGNVGEKKDDEGLSRKMAALCDVYVNDAFGTAHRAEATTHGI
ARFAPVACAGPLLEAELDALGRALHDPKRPLVAIVGGSKVSTKLSILQSLADKVDQLVVGGGIANTFMLAAGLPIGKSLA
EPEQVEQARAVIEIMKRRGAEVPIPTDVVCAKSFGADAAATVKAAADVAEDDMILDIGPQTAQRLADILKTAGTIVWNGP
VGVFEFDQFAHGTEVVARAIADSAGFSIAGGGDTLAAIAKYGIADQTGYISTGGGAFLEFLEGKALPAVAVLQARAA
>SEQF1086_CAE41303.1 enoyl-[acyl-carrier-protein] reductase [NADH] [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAAAPLQGRRGLVTGIANQDSIAWGCARAFRALGAELAVTYLNDKARVHVEPLARSIDAALLLPLDLRVDGQLESVFEQ
IGARWGSLDFVMHSIAYAPRDDLRGRVVDCSRAGFLQAMDISCWSFIRMAHLAEPLMPKGGTLFCMTYYGSQMVVEHYNM
MGPVKAALESATRYLAAELGPQGIRVHAISPGPLKTRAASGITGFDALLDRAQAKAPARSLVGIDDVDEATAWLATDAAR
RITGQTLYIDGGYHIID
>SEQF1086_CAE41304.1 acetate kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDNLLVINAGSSSLKFYLYEIAEGDELRPTLGGQLDGIGGSRPHLRIRAQDGHTLLERDVAPTHAADVPGAQEVLGTWL
SGHLGGAPCAIGHRVVHGGTQYDAPVLVDDDVLAQLDDLTPLAPLHQPNNLAPIRVIRERRPNIPQVACFDTAFHRTHSP
LADRYALPEHLYQEGVRRYGFHGLSYEYIAQRLRRALPEIAGGKIVAAHLGNGVSACTMVDGRSVDSTMGFTALEGLPMG
TRPGRLDPGVVLWMMERGMSHDDIEHLLYHDCGLKGLSGIGNDVRELLASDAPAARLALDYFAWRVAEGIAGLGCAMNGI
DAIVFTAGIGENAAPVRAAIARHWEWLGVRLDEARNARHGPRISSDDSAIGVYVVRTNEELIIAQHTLALVRQRQA
>SEQF1086_CAE41305.1 phosphate acetyl/butaryl transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSATRHNHYERLIAHARTLPALPCAVAHPCDETSLGAALQAMQLGLLTPILVGPQQKIRDVAERCGLDLGGAAIVDAPHS
HAAAAAAVQLVRGGQASLLMKGSLHTDELMHEVVARDTGLRTERRISHVFIMDVPTYPEPLFITDAAINIFPDLETKADI
VRNAIALHLGLGLGEPRVAILSAVEQVMPSIPSTLEAAALCKMADRGQIQGGILDGPLALDNAISPEAAQVKGIVSPVAG
RAQVLVVPDLEAGNMLAKNLSFLANAQAAGIVLGARVPIVLTSRADSAQTRLASCAVATLYAHHLARATPLA
>SEQF1086_CAE41306.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAASAADRTAPDRSPAPAAHPAANLWTSAYQYTLDAWQRGILYTDVMRQRGNQYLTHMAKRAPNVLSMKSELVLDGRKFE
RPVNYALLRIVPPADAPVDPQKHPFLVVDPRAGHGPGIGGFKPESEIGVAVRAGHPCYFATFLPHPTDTQTVEDVMRAEA
RFLEEIIALHPQAEGRPVVVGNCQAGWQIMMTAAMRPELFGPIIVAGAPLSYWAGWRDMNPMRYSGGLLGGSWLTQMTSD
LGNGKFDGAWLVQNFENLNPANTLWSKQYNLYAKVDTEAPRYLEFEKWWGGHVFLNGPEIQYIVDNLFVGNRLATAGLVT
SDGIRIDLRNIRSPIIVFCSKGDNITPPPQALGWITDLYQDDREVVAHNQTIVYAVHESIGHLGIFVSGAVARKEHQEFT
ANIDVIDVLPPGIYQAEIADKTPDTPNADLAYGDYVLSFERRRLDDVREIVERNEEDDQRFAAVARISDINLGLYRSFVQ
PWVRAAVTPQSAEWMQRMHPLRLPYELISDRNPWVAPVAQLAEQVREQRQPAAPDNPFWALQKMASDAIVAGLDIWRDLR
DSACERIFMATYGSPLVQDWAGLGAKDGPPRRHPGVSPEHRDFMAARAAELRAQIDQGGLREAGLRMLLYVSGAEGGVDE
RSFAMIRKMRADTDAKLSLQAFKDATRDQALMMQLDGPAAIRAIPKLLENASAADIRATLHGITHVLEAAGPLSDRARAS
LDEMKRLFQGAERRAVKRADAPAPARKAAARKTATGKAATGKTAARPAGRKAAATPRKGRTA
>SEQF1086_CAE41307.1 probable glutathione S-transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPAPLTLYVDARFRSPYAMSAHVALAEKQLEFEVRLVDLAAGEQRMQPYQSRALTARVPALAHAGFHLTESSAIQEYLED
AFAPPAHPALYPAGAQARARARQVQAWLRTDLAALRRARPIDSVFDAPATTPLDDAAHCDAAKLIRVAEALLPPGQAHLF
GAWSIVDTELALMLNRLAHSGDDLPAPLRDYAAAQWQRASVQAWLRHYEAARG
>SEQF1086_CAE41310.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPTPADLQLLADYNQWMNQRLYACAAQLPPDELARERGAYFGSLLGTLNHVAVSDRVWLQRFAAHPARPAALQPVLALPT
PARLDEVLYPALGPLAAHRAWLDRCIVDWAAQLRPDDLACELAYTSLACEAARRPFGGLVLHFFNHQTHHRGQATTLLSQ
AGIDMGATDLVLRVPASGDAPA
>SEQF1086_CAE41311.1 putative acetyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLEIIEADFNDAAHARAIIALLDEYARGPMGGGEPLSAHARANLVAELARRPHARALLAWQDGEPAGLAICIEGFSTFAC
RPLLNLHDLAVAERFRGQGVGTRLLEALEALAARLDCCKVTLEVLEGNTRAQALYRRLGYAGYELAADTGRAMFWQKKLS
A
>SEQF1086_CAE41312.1 curved DNA-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEFKDYYKILGVQSDAPEDEIRRAYRKLARKYHPDVSKESDAETRMRDVNEAYDVLGNQEKRQAYDNLAAGVAPDGGFQP
PPGWDQGFEFHYARDGEGDQQFSDFFSSLFGGQARRRAAQQDFRARGEDHHAAIEVDLEDALRGATRDISLRSMQPDEHG
QPQVRTRTLSVRIPAGVREGQYIRLAGQGMPGYGGAENGDLYLEVRFKPHPRYRAEGRDLYMNLPVAPWEAALGAQVEAP
TPGGAVEVAVPPGSRNGRKLRLRGRGIPGDPPGDLYLVLDLVLPPADSEAAREAYRKMAQDLAFDPRRNLGV
>SEQF1086_CAE41313.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKIVVTQATVIGKTRALSAEELAHACDAEVEWVARLVEVGIVPARGRQPAEWRFYSLDLRRAREARRLERDMGAGLDAA
ALILDLCQEVRQLKARLRALGEPPA
>SEQF1086_CAE41315.1 probable phosphate transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLHLFSGLDLWVGLSLVLALTFVLAFEFINGFHDTANAVATVIYTKAMPPHLAVILSGIFNFLGVLLGGVGVAYAIVHLL
PVELLINVDTGRGLAMVFAMLSAAIAWNLGTWYFGIPASSSHTLIGSILGVGMANALLTDISLAEGVNWGKAIDIGLSLV
VSPVAGFMVAGGILLLLKRWLPLSKMHKTPEQRRAIDAKKHPPFWNRLVLVLSAMGVSFVHGSNDGQKGIGLIMLVLIGI
VPAKFVLDVNSTTYQIDRTRDAASHLSAFYHRNEATLGEFLALSRGGNGADLPKTFRCDPKLTMPTIAALQDDLRGVTNY
ADLSADKRIDVRRYLLCLDDTAKKVARLEGLPARERADLQRLRGDLTTTTEYAPLWVIVAVALALGIGTMVGWRRVVLTV
GEKIGKQGMTYAQGMAAQVTAVGAIGLANVFSLPVSTTHVLSSGVAGTMVANNSGLQGGTVRTILMAWVLTLPASMLLSA
GLFWVGTLLAA
>SEQF1086_CAE41316.1 molybdopterin biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTSTSPSAPLVRSHPDELLIGLVSISDRASTGVYQDQGLPSLRDWLGTALTSPWQAVERLIPDEPAAISAAMVDLVDGC
GCDLVLTTGGTGPARRDCTPEATLAVATKEMPGFGEQMRQISLRFVPTAILSRQVAVIRETAGHAALIINLPGQPKAIRE
TLEGLKDADGAVLAAGVFAAVPYCIDLIGGPYAETDPAVIKAFRPKSALRQPAARQ
>SEQF1086_CAE41317.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKARFALLALGLALAGCANVKDIRDREPAFYGSPQRSAQEYAACVSAAWKGLGVPVEQREIRNGYELVSRGSLGVDAVLT
TTTWQGKTDASLSTRLPQSGQQLVDAANLCL
>SEQF1086_CAE41318.1 putative peptidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAAARLWRGAWLALALLAAQGAQAQGYISRKLSAPVPGGVAVVDLGQAAQAPEVTYRGRPVMVLREADGPWIAVVGIPL
AARPGSEAISVRGSGGAVRSIAFDIGAKKYTAQHIKLKNQRQVTPNPDDLKRIERELAEQTDAYRIFRAGVTPSNVLLDR
PVPGRLSSPFGLRRFFNGQERNPHSGLDFAAAAGTPIKAPAAGRVVLVGDYFFNGRTVFVDHGQGFISMFCHMSEIDVKV
GDEVPRGGVVGKVGATGRATGPHLHWNISLNDARVDPAIFIGAFKP
>SEQF1086_CAE41319.1 hypothetical protein BP1018 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDKHETLRDAADRLNSARRAFGLGEDGLRLLRRSREAFINSLRNTGLTYAQAQVKYDNCLDEQQQLHQQAIHELQYAER
LHRQLLAELEQTA
>SEQF1086_CAE41320.1 translation initiation factor IF-1 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAKEELIELNGIVDEVLPDSRYRVKLDNGIEVGAYASGRMRKHRIRILAGDRVTLEMSPYDLTKGRINFRHKDERSGPPS
RPPQHRR
>SEQF1086_CAE41321.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41322.1 RNA polymerase sigma factor for flagellar operon [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPNPEDSLVQYAPLVRKLALQLLARLPSSVQLDDLVQAGMIGLLDAVRRYQESPDAQFETYATARIRGAMLDELRSQDWL
PRSVRSKSRRIETAIQRKEQELMRAPSEGEIAEELGVPLAEYQGMLADAQGVQILHYEDFNTDGDSDSPWAESSAEHADP
LDALLAGDLRRALIDAIDGLPEREKLLLSLCYEQGLNLKEIGAVLNVTEARVCQLRAQATARIRARLKEQAWARLPTAHH
LAQVV
>SEQF1086_CAE41323.1 flagellar transcriptional activator FlbB [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTADSSLLADIREVNLSYLLLAQRMLRDDYAASMFRLGFSNEVADILMRLSPAQLVKLANSSSLLCRFRFDDYSLLSAL
TQDVLGGALQQAHATILLARQPVEELA
>SEQF1086_CAE41324.1 flagellar transcriptional activator FlhC [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATKSVSQEADEILLASSMITLGARLQVLQAETGLSHDRLARLYREIRGCSPPKGMLPFSVDWFMTWLPNIHSSLFYNVY
TFLNQRTSSQGIRAVIDAYRLYLEHAPADAAEPVLSFTRAWMLVRFFDGGMLQLSGCRQCGGHFIAHAHDPQTDFVCAIC
RPPPRAGKTRAAARARAGQLAAPARP
>SEQF1086_CAE41325.1 chemotaxis protein MotA [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLIVIGYAVVILAVVGSFIGLGGHLGALYQPFELTLIAGAAVGAFMAGNSRKSLGLVAKAIPEAFRSSPYSKDVYMELMA
LLYVLLNKARREGLMAIESHIEDPLSSPIFNEYPRIMKDAKLMEFITDYLRIMISGNMSSFEIETLMDEEIETYRHEREV
PTHALQQVADALPAFGIVAAVLGVIKALAAVDQPPAILGDLISKAMVGTFLGVLLAYGFVAPMAARIERRTSESVKVLEC
IKVTLLASMNGYPPQLAVEFGRKVLFSAVRPSFGELEEHVRQAKSAATGRA
>SEQF1086_CAE41326.1 chemotaxis protein MotB [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTVNNHRVVIRRRKVRRGGHHGGSWKIAYADFITAMMAFFLVMWLISIVPREELKGIAEYFRMPLRVALTGGPSSSAET
SAIPGGGQDPLRSQGDVRRAEGNRVEAQPMGDAERRDRHRLERLKVRLENLIEESPVLKNFRPQLLIDMTTEGLRIQIVD
NQNRPMFATGSADVQPYMRDILRELGPVLNDLPNKISIAGHTDASQYARGERAYSNWELSADRANASRQELVAGGMHEGK
VLRIQGLASSMSLVKDDPFAAVNRRISLVVLNASTQRRIENENAAAADVNARDAQGVGAALAGQLAASGSDGGAR
>SEQF1086_CAE41328.1 chemotaxis protein CheA [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSGLDLSQFYETFFDEADELLAQMEQLLLELDVGAPDIEQLNAIFRAAHSIKGGAATFGCFQKLAGTTHLLENLLDAIR
RGEMGLRADMVDIFLETKDVLKSQLDAYRASEEPEDAVFERICAVLRQLALEGGQAPAAAAPAPVAAPEPDPEPEPAPQP
AAASTAAGLPLRVRFSKVSDKDAQSLLEEMGNLGDVRASERAGQTLTVWVDTTCSPDDIEAVCCFIIDADQLEIAREAEP
AHAPAQAAVAAAPDAAATPTPAPAPAAAQAAEPARAARPSIAPAHADKESTSIRVGVEKVDQVINLVGELVITQAMLAQT
ASTLDPVLHDRLLNGMEQLERNARDLQEAVMSIRMMPMDYVFSCFPRLVRDIAGKMGKQIELQTYGRATELDKSLIERII
DPLTHLVRNSLDHGIETPDKRVAAGKEPVGQLVLSAQHNGGNIAIEVSDDGGGLSRERILRKAVAQGLTVNENSPDDEIW
QLIFAPGFSTADQVTDISGRGVGMDVVRRNIQDMGGHVQLSSVPGQGTTTRIVLPLTLAILDGMSVRVGEETFILPLNHV
TESLQPQVDQIYSVAGNERVMQVRGEYLPLVEMHRVFSVGQAQADPTQAIAVIMQAEERRFALLVDHLVGQHQVVVKNLE
SNYRKVPGISAATILGDGSVALIVDVLALARANREKWSQPEAILN
>SEQF1086_CAE41329.1 chemotaxis protein CheW [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAKPHTQATRAEDVGNEFLVFTLGEEEYGIDILKVQEIRGYDAATVTRIANVPSFIKGVTNLRGIIVPIVDLRIKFNLG
SVEYNEQTVVIILNLDRRVVGIVVDGVSDVLMLNAAQVRPAPEFGATLSTEYLTGLGTVDERMLILVDIEKLMTSDEMAL
VEKVAS
>SEQF1086_CAE41330.1 methyl-accepting chemotaxis protein I [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRKFLANLSIRGSLLGVLAFFSFMLVVGAALGVLSLRVSNDTLQGVKQTQDVADAMDRVVNSYKDALNGLGRAAASHYGA
IVSAIGQPVQVEQGLGSEAAGLLQRAKASLNRAETEYEYYKGLARPASAADSLKEVENAFEALVGQGLHPLAAALEKGDM
AGYQSHAQNVLDALEGRFSGAIAAFDFWRASELLDAHEVAETRYRFVLAAVAAGGVLAALLVFSTYLFLRRRVLQPLREV
GQHFDKIAAGDLTARVDVRNSNEIGQLFAGLKRMEESLTRTVAAVRRGVDEINVGSREISAGNTDLSSRTEEQAASLEET
AASMEQLASTVKQNADNARQANQLAGVASDVAERGGSAVSEVVTTMQDISASSRKISEIVSVIDGIAFQTNILALNAAVE
AARAGEQGKGFAVVAGEVRSLAQRSAQAAKEIKVLIEDSVDKVGTGSQQVERAGATMQEIVASVKRVTDIMGEISAASEE
QSSGIEQVNRAVSQMDEVTQQNAALVEEAAAAAGSLQEQAQRLAEAVAVFKINTGEVIEVPAHQLGSRQAPGAREAALAR
DDALALGH
>SEQF1086_CAE41332.1 protein-glutamate methylesterase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKKIKVLCVDDSALVRGLMTEIINSHPDMEVVATAPDPLVARELIKKHNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVV
MVSSLTERGGEITLRALELGAIDFVTKPKLGIRDGLIEYSEVIADKIRAASRARLRALAPASHAAPLRLRSPFASSEKLV
IVGASTGGTEAIREVLQPLPADSPAILITQHMLAGFTRSFAQRLDALCAVTVREASDGERVLPGHVYLAPGGETHMRLGR
SGANYVIGLQASEPVNRHRPSVDVLFHSAAEAAGGNAIGVILTGMGKDGAAGLLAMKRAGARTMAQDEASCVVFGMPREA
IALGAADEVVPLADISERILTRLGDRGHRV
>SEQF1086_CAE41333.1 chemotaxis protein CheY [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVDKGMKILVVDDFPTMRRIIRNLLKELGFENVDEAEDGAIGLEKLRNGAFQFVVSDWNMPNLDGLEMLKQIRADAALKS
LPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLEEKLNKIFEKLAG
>SEQF1086_CAE41334.1 chemotaxis protein CheZ [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNATDTGMQADPTDLIQRIASLTRMLRDSMRELGLDQAIKDAAEAIPDARDRLRYVAQMTEQAANRVLNATEAAGPIQDG
MARGAQALDERWQQWYDQPLELPQARALVQDTRAFLAAVPQHTQQTQAKLMEIVMAQDFQDLTGQVIMRMMDVVGAIERE
LLQVLLDNVPQERRDEANSLLNGPQVNPGGKADVVTSQDQVDDLLASLGF
>SEQF1086_CAE41335.1 transposase for IS1663 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPVVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF1086_CAE41336.1 putative aldo/keto reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTSFPTQRLGATDMRITRVGFGAWAIGGPGWSVGWGAQDDGESIRAIRHAVNRGINWIDTAAVYGLGHSESLVGRALAG
MPPSERPYVFTKGGLVGSPADPMAKPRRIGAPDSLRREVEASLRRLGVEAIDLYQMHWPAGDGTPLEVYWQALLDLRQAG
KVRHVGLSNHNLAQVQAAEQLGHVETLQPPFSAIRRESAADLLPWCASHDTGVIVYSPMQSGLLSGAFSAERAAALPEGD
WRARNAEFMAPRLAANLEFADALKPIAQHHGASVGAIAVAWALAWPGVTGAIAGARSAEQVDGWLGAATLELDSDDMRQI
ADALARTGVGGGPLLPPPDEAALALTARP
>SEQF1086_CAE41338.1 magnesium and cobalt efflux protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDPYPATEAHAQRAAKSPPKSLLDRLLSLVRREPEDREGIKAILEAAHERELLDAESYAMIKGALAVSERTVADIMVPR
SRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEPALDIRSLVRPAVFIPEVKRLNVLLREF
RASRNHLAIVIDEHGGISGLVTMEDVLEQIVGDIEDEFDEDEEESIFPEGENQWRLTASTDISHFNATFATDLPDDEYDS
VGGWLGGQLGRIPRRGDSADHDGLHIEVVRADARRALWLRVRRNAGAQPPASAAE
>SEQF1086_CAE41339.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQYGVADARLPRWRLRRWVQYALAGAAGDGHAGLAGAELGLRLVGLAEGRRLNREFRGRDYATNVLTFEYGTGPDGVARG
DIVVCVPVLAREAREQRKTLLDHAAHLTVHGTLHALGYDHIKAGEARRMEALETAVLARMGIADPYLAA
>SEQF1086_CAE41340.1 PhoH-like protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTSRSRARRTMPAIVNLDGDNIHLANLCGPLDENLRQLADGMGVKLARRGSRVTIEGEQAELAGRALRRFHEQATHRAL
SVDDIQLGLVEIGVGRPVEVQADPRELDQTLPPVDDESGGVVLRTRRTDLRPRTPRQRDYMNNILKHDITFGVGPAGTGK
TWLAVACAIDAMERDTVQRLVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLMGFERVQRLFEKQTIEIAPLAY
MRGRTLNHAFVILDEAQNTTPEQMKMFLTRIGFGSKAVITGDPSQVDLPRGQQSGLAHAVQVLEEVQGIATTRFTNRDVV
RHPLVARIVDAYDQAAANGD
>SEQF1086_CAE41341.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYIRTFGCQMNEYDSDKMADVLRADQGLELTDNPEDADVILFNTCSVREKAQEKVFSDLGRVQHLKKQNPNLVIGVGGCV
ASQEGEAIVKRAPYVDVVFGPQTLHRLPDLIKRRRAQGVSQVDISFPEIEKFDALPPPRVDGATAFVSIMEGCSKYCSFC
VVPYTRGEEVSRPFDDVLLEVADLADQGVKEVTLLGQNVNAYRGAMGDSGEIADFAMLLEYVHEIPGIERIRYTTSHPKE
MTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAAMKRGYTALEFKSVVRRLRAARPSLTLSSDFIVGFPGETEEDFQKTMK
LIEDVGFDTSFSFVYSRRPGTPAADLHDDTPQDVKLRRLQQLQALINQQAAAIAQGMIGTRQRVLVEGPSRRDPNELMGR
TENNRIVNFPGVPRLIGHMVDVVVTHAHTNSLRGRVAGIERDTSGAE
>SEQF1086_CAE41343.1 transposase for IS1663 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPVVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF1086_CAE41344.1 protein-export membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEFFRIHRTIPFMRHALVLNIISLVTFLAAVFFIITRGFHLSIEFTGGTVMEVSYAQTAQLDQVRTAIGTLGYTDFQVQN
FGTSRDVMIRLPIAEGQTSATQSETVMGALKAADPAVELRRVEFVGPQIGQELLHNGLMALLVVVIGIMVYLGLRFEWKF
AVAGVIANLHDVVIILGFFAFFQWEFSLAVLAGVLAVLGYSVNESVVIMDRIRENFRKYRKASVQEVINSAITQTISRTI
ITHGSTQMMVLAMLFFGGPTLHYFSLALTIGIWFGIYSSVFVAAALAMWMGVKREDLVKPVKKDGDEVEIA
>SEQF1086_CAE41345.1 protein-export membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRYPLWKYITVLVAVVIGLLYTLPNFYGESPAVQVSSAKATIKVDQATLEQVQQIIENAQLPVDSVYYEQNGTLGTVRA
RFPSTDVQLQARDLIDRTLNTVAGDPHYTVALNLLPASPPWMRSLGWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYD
SLVADVRSALRDQKAEVGAIERSGQSVVATFATAEQRDRARDVLRSRLPDLQFTETSDGGKLQLTGMLNPAAVTRVQDTA
LKQNINTLHNRINELGVAEPVIQQQGADRIIVQLPGVQDVAKAKELLGRTATLEIRMVDDSPAAQSALAAGSVPFGLERY
TDRDGRPLLVRRQVVLTGENLQDAQPGRDGQTQQPAVHLTLDSKGARIFRDVTRDNIGKRMAILLFENGKGEVVTAPVIR
SEIGGGQVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKGFYSTLYGFIAIAIFIIVYYHLFGIF
STIGLTVNVLLLLALLSMLQATLTLPGIAAIALTLGMAIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLT
TLIVGLALLAFGSGPIRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRKKKLSSISIGTVWKPKAN
>SEQF1086_CAE41346.1 putative secreted protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAIDTAGLVLAQAAPAEGNALMGMLPIVLMFVILYFLMIRPQMKRQKEHRNMVAALSKGDEVVTSGGMLGRVSKVTDSY
ITVEVSELADKPVEVVMQKTAVSAVLPKGTIKAL
>SEQF1086_CAE41347.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE41348.1 queuine tRNA-ribosyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTGLQFELLATDGGARRGRLTLNHGVVETPIFMSVGTYGSVKAMLPHELEDIGAQIVLGNTFHLWLRPGTAIMEKHGGLH
GFMQWDKPILTDSGGFQVFSLQGMRKITEEGVKFASPIDGARLFLTPEESMRIQRSLNSDIVMVFDECTPYEIDGRPASI
DEDARSMRMSLRWARRSRDEFDRLGNPNALFGIVQGGMYEALRDESLAGLAEIGFHGYAIGGLSVGEPKEDMMRILAHVT
PRLPAQAPRYLMGVGTPEDLVEGVARGVDMFDCVMPTRNARNGWLFTRYGDVKIRNARYRDDTRPLDPSCACHTCGHFSR
AYLHHLQRANEITGARLNTLHNLHFYLAIMGEMREAIAAGRFEAWRAQFAADRARGVD
>SEQF1086_CAE41349.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPTPLTLADFDYHLPPELIAQSPAAERGGSRLLHLDAASRLHDRRFPDLAGLLRPHDLLVFNDTRVIKARLTGQKATGGK
VEVLVERITAPDRALAHVRASKSPGPGMRLRLAEAFEAEVLGREGELFDLRFPAPVLDLLDAHGATPLPPYITHAADATD
ERRYQTVYAREPGAVAAPTAGLHFDQPMLEQLAAQGVQRAFVTLHVGAGTFQPVRVQNLAEHIMHAEWYTVPEATVAAIA
RARAHGGRIVAVGTTSVRALESAAAQAQDGPLAAAQGDTRLFITPGYRYRAVDALLTNFHLPQSTLLMLVSALAGVEPIR
RAYAHAVAERYRFFSYGDAMFIETPAP
>SEQF1086_CAE41350.1 probable D-alanyl-D-alanine carboxypeptidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRAGKQGKWQQWLAGVMLALGAAGAAAQGLPSSLVAAWKATKLPDQSLSLVVQEINGPRLATLNAKEPRNPASVMKLVT
TWAALSELGPSYAWRTEFLTEPGNRPDAHGVLRGPLYLRAGGDPQLLLQDLWALLRELRLRGVKQIGDLVVDRSIFGQVA
IDPGAFDGASDRAYNASPDALMVGFGAQRLLFTPDAAARKWVPMIDPPLPGLRLEGAVEWSDVRCPGPPVVGTEPVVTQQ
GVSIRLSGKVAGSCGEFSLYRLALSQPEYASAVFRLLWRELGGTLKGQIRSGVVPPDAVVLASHDSPTLGEAIRTINKRS
NNVMARTLLLTLGAERGRRPATVESSGVVARTVLGAQGLEMPELVIDNGSGLSREGRVSADSLASMLTVAWNSPLMPEFI
SSLAIAGVDGTVRRRLKGNGAQGMAHLKTGSLRDVRAVAGYVLGASGKRYVVVSMVNHENAAAVRSFDDALVAWLAEQ
>SEQF1086_CAE41351.1 uracil phosphoribosyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPVHEIRHPLIRHKLGIMRRADLSTKSFRELSQEVAALLTYEATKDMPLAPASVEGWCGTVEVDKITGKKVTVVPILRAG
IGMLDGVLSLIPGAKVSVVGVARNEETLQAHTYLERLVGELDQRLALIVDPMLATGGSMVAAIDMLKRAGCREIRALTLV
SAPEGIDAVLKAHPDVQIYTASIDQGLNENGYIMPGLGDAGDRIFGTTQKHAE
>SEQF1086_CAE41352.1 transposase for IS1663 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKQVHLC
FGVLKNRIPYQPNYAMNG
>SEQF1086_CAE41353.1 pertactin precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNMSLSRIVKAAPLRRTTLAMALGALGAAPAAHADWNNQSIVKTGERQHGIHIQGSDPGGVRTASGTTIKVSGRQAQGIL
LENPAAELQFRNGSVTSSGQLSDDGIRRFLGTVTVKAGKLVADHATLANVGDTWDDDGIALYVAGEQAQASIADSTLQGA
GGVQIERGANVTVQRSAIVDGGLHIGALQSLQPEDLPPSRVVLRDTNVTAVPASGAPAAVSVLGASELTLDGGHITGGRA
AGVAAMQGAVVHLQRATIRRGDAPAGGAVPGGAVPGGAVPGGFGPGGFGPVLDGWYGVDVSGSSVELAQSIVEAPELGAA
IRVGRGARVTVSGGSLSAPHGNVIETGGARRFAPQAAPLSITLQAGAHAQGKALLYRVLPEPVKLTLTGGADAQGDIVAT
ELPSIPGTSIGPLDVALASQARWTGATRAVDSLSIDNATWVMTDNSNVGALRLASDGSVDFQQPAEAGRFKVLTVNTLAG
SGLFRMNVFADLGLSDKLVVMQDASGQHRLWVRNSGSEPASANTLLLVQTPLGSAATFTLANKDGKVDIGTYRYRLAANG
NGQWSLVGAKAPPAPKPAPQPGPQPPQPPQPQPEAPAPQPPAGRELSAAANAAVNTGGVGLASTLWYAESNALSKRLGEL
RLNPDAGGAWGRGFAQRQQLDNRAGRRFDQKVAGFELGADHAVAVAGGRWHLGGLAGYTRGDRGFTGDGGGHTDSVHVGG
YATYIADSGFYLDATLRASRLENDFKVAGSDGYAVKGKYRTHGVGASLEAGRRFTHADGWFLEPQAELAVFRAGGGAYRA
ANGLRVRDEGGSSVLGRLGLEVGKRIELAGGRQVQPYIKASVLQEFDGAGTVHTNGIAHRTELRGTRAELGLGMAAALGR
GHSLYASYEYSKGPKLAMPWTFHAGYRYSW
>SEQF1086_CAE41354.1 siroheme synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLFPIFADLTGRRVLVVGGGAVAVRKTQALLQAGAEVVVGAPRLDPALAALAEQGGIARLDGGFEPAWLAGAWLVVAAT
DDRAVNAAVSEAARARRVFCNVVDDAELSSFQVPSVVDRSPLIVAISSSGVAPVLARRLRERIESLFDHSLGQLAALAAR
YRPRIRAARPDLGQRRRFYDWLLDGPVAARLRQQQPGLAEQELEQALRAPQAAPRGSVVLVGAGPGDPGLLTLKALRALN
EADIILYDRLVSEGVLALARRDAERVPVGKLPGKGHDATQARIHALMLAQARAGRRVVRLKGGDAFIFGRGGEELEYLRA
HGVPYEVVPGITAALACAAYAGMPLTHRDHAQSVRMVTAHCRADQDTLDWAGLARDQQTLAFYMGVGQLDYVTARLLEHG
RAPATPFALIENGSRPEQRVVTGTLADLPEIARRRGVRPPALLVIGEVAALADTLQWFGQHQRGLPGPQALAA
>SEQF1086_CAE41355.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMVRFFVSIGVLAWAGAAQAGVCDAKFMHDGGQVQLTGSGNIGLGADLGFTEVSKTNGDNCRARVQGMATFSYAGLPPGK
SRLDYLMTVKNGQATFVKYAEAGEQPRSEGQFDLRMLGLFAYDKISGEGQRLPGASYRLRIGKEAPVGGQPTTVVRIGEK
TVGARQDLSTALGRHACWPITYPRSSEPTMATFKGLTLPIPGMDTTVTDWYCPSVNLVMRQDIDQAGIKSSVEITQLK
>SEQF1086_CAE41356.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAARRSDEATKEKLIDSVKTSLNDAETLLREAASTTGDKATELRERALASVRRTREALYDAQDAVLERGRRAARATDDYV
HDNPWQAISIAGVTGLLLGLLISRR
>SEQF1086_CAE41357.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGLRRSVFGVAASLVGLTRTRLELLALEAAGEKIRLIKLLGMAFGALLFLTLAVLVFTITIAVAFWPTESRYAALGWLAG
GYGVIGLVLFFLVRRDLVDGPVPFAATLEELGRDTDMLERVRDAQRASDGQRNAEDD
>SEQF1086_CAE41358.1 hypothetical protein BP1059 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARHSASVDRMVRLELLRARAALEREALAQGIVEAGRTLTPSNMVKSIWPSLGKANTSRLFWQAFALVRRYPFVSSTLSA
MVMGRGARRSRLLKLAGVALVGWQAYRIWQSAREERQAD
>SEQF1086_CAE41359.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPGSALKYRDLRDFLAQLERQGELKRITAPVSTRLEMTEIADRVLRAGGPALLFENARHNDAPADMPVLANLFGTPRRVA
WGMGADDVGALRETGELLASLREPEAPKGLRDALAKVSMLKAALWDMSPKTVRSAACQEIVWEGADVELSRLPIQTCWPG
DVAPLLAWGLVITRGPNARRQNLGIYRQQPLGPNKLIMRWLSHRGGALDFRDHAQAHPGKPFPITVALGADPATILGAVT
PVPDTLSEYQFAGLLRGSRTEVVKALGSDLSVPASAEIVLEGHLLPADDPRAVAAVVPEGANPPPATGYEMALEGPYGDH
TGYYNEQDWFPVFTVDRITMRRNPIYHSTYTGKPPDEPAVLGVALNEVFVPLLRRQLPEIVDFYLPPEGCSYRLAVVSIR
KQYAGHAKRVMFGLWSVLRQFMYTKFIVVVDEDIDPRDWTEVVWAMTTRMDPVRDTVLVENAPIDYLDFASPVSGLGGKM
GLDATNKWPGETSREWGTPIHMDEAVKRRVDAMWDTLGL
>SEQF1086_CAE41360.1 putative transglycosylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPDASVAGLFRQLAQGVHHHLAEWLRISSVYLGIAVIVTVSMGFALPGLRDQALQVHKALLTALAPTSMPSAELEPGAEA
GADASSAVVMAIPSAPASNATGFLGPLRSDTPPAPPNRPSAASSAQVEALRNYISRKYKVAYDATAVLVNTVYKVGREKQ
LDPLLLLAVIAIESRYNPFAESPVGAQGLMQVMTRVHQDKFDAIAHVGKGNPLDPVANIHVGSTILKDCINRRGSFNGGL
ACYVGATGPDDGGYGAKVLAERRRLALASGIALARD
>SEQF1086_CAE41361.1 probable aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPRLATRTNDFLTFQVVELFKEAQALQAAGRDIISLGIGEPDFTAPPQVVEALERATRAGLNGYSAPAGLSALREAIAAF
YESEFGARVDPARIIVTAGASGALALACAALVNPGAQVLMPDPSYPANSNFVLAAGGQPRLIPSTAAKRFQLSAQDVRDH
WNDATQGVLIASPSNPTGTSIAHDELAELLAAVRERQGFSIVDEIYLGLSYESQPRSALLLDDNIIVINSFSKYFHMTGW
RLGWMIVPESMAAKVEKMAASLAICAPTLAQHAALACFTPDALKIFEHRREAFKQRRDYLLPEFERLGIPVPVRPDGAFY
IYADIAALGTTSMAFSHRLLHEGGVAAVPGLDFGPAHGERTMRFSYATGLDRLQEAVARIEKLL
>SEQF1086_CAE41362.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQPSRRAFLLGRRPRQSSWAAFCERLSLAVAAPLRDLDPAGGAALLRARSDAEVRRARALCQEYGVSLGLPGARPAGRPV
LQIDPRGLRALAPEGGAWRAGPGCLAGELAAAGLGQFAEVAPTCTLADWLADSHGWPTGETGVSGVLEASVLLADGTAEV
LGPFGAADVRPLRSATVQRLVPALFQLAGGQDAAACLAQPAWPARYRLDALQPREPAGVNLAHLLLGHDSALAWVESVLL
APAAAPPPAASGSAPAEAARLDARVRALFDPDGVLAARAGSGAVGAKGRE
>SEQF1086_CAE41363.1 NADP-dependent malic enzyme [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDANFRKAALEYHEHGRPGKISVTPTKQLSNQRDLSLAYSPGVAAACEEIVDDPVNVFRYTGRGNLVGVITNGTAVLGLG
NIGALASKPVMEGKAVLFKKFAGLDVFDIEINETDPDKLVEIIAGLEATFGGINLEDIKAPECFTVERKLRERMKIPVFH
DDQHGTAITVCAAVVNGLAVAGKRIEDVKLVTSGAGAAALACLDLLVDLGLPLEHIWVTDIEGVVYEGRKKLMDADKERF
ARKTKARTLAEVIEGADVFLGLSAGNVLKPEMVATMAANPLILALANPNPEILPEAAHAVRDDIVMATGRSDYPNQVNNV
LCFPYIFRGALDVGATTITREMEKAAVLAIASLAREEQNEVVAAAYGTYDISFGRDYLIPKPFDPRLIVRIAPAVAKAAM
EGGVATRPIADLDAYAEQLQQFVYHSGAFMKPLFSQAKQIVRDGGRARIVFTEGEDERVLRAVQVIVDEKVAKPILVGRP
QVLLSRIEKFGLRLRLGQDVEVCNPEYDERFHQYWTTYWDMMCRNGITKEMARVEMRRRLTLIGAMMVHLGDADGMICGA
VSGFHDHLRFIDQVIGRKPGAQTYAAMNILLLNERTVALVDTHVNEDPSAEQIAEYTVAAAEEMQRLGLAPKVALLSRSN
FGSGSSASGAKMRHALELVNRQAPGLEIDGEMHGDCALDESLRLRLLPDSPLKGSANLLVCPNVDSGNIAYNLLKTTAGG
NVAVGPFLLGANAAVHILTSSSTVRRIVNMAAMAVVNADAVR
>SEQF1086_CAE41365.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRNGQTTLQRQLRRGGALDHDGLDKQAVVDATRELGMSLLVADCDRARSRSAVLRAIAKAVDFPEYFGGNLDALYDCLC
DTVLDHKTGIVLWLYRLHSGDPALHEDSNLIDGVCADTAEFARENGRVFAYVIEHAGRHPDPEPGVAAAPYGEA
>SEQF1086_CAE41366.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE41367.1 phosphate transport ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MENTATAAKAKLEVKNLNFYYGKFHAIRNVNMSIRENKVTAFIGPSGCGKSTLLRTFNRMFELYPGQRAEGEILLDGENL
LTSKTDISLIRAKVGMVFQKPTPFPMSIYDNIAFGVRLFERLSKGEMDERVEWALSKAALWNEVKDKLHQSGNSLSGGQQ
QRLCIARGVAIKPEVLLLDEPCSALDPISTAKIEELIAELKHEYTVVIVTHNMQQAARCSDYTAYMYLGELMEYGATDQI
FVKPARKETEDYITGRFG
>SEQF1086_CAE41368.1 phosphate transport system permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNNGVYRRRHLVNKVMLTISLGALLFGLFWLFWIIATLLVKGAPALSFTLFTEITPPPGQAGGLLNAVVGSVLMAGVGTL
IGTPVGILAGTYLAEYGQRGWLAPATRFLNDVLLSAPSIIIGLFIYAVYVAQVGHYSGWAGALALSILVIPVVVRTTDNM
LLLVPNSLREATAALGCPKWRMITLVCYRAAKTGIITGVLLAIARISGETAPLLFTALSNQFMSLNMNAPMANLPVVIYQ
YAASPFKDWNNLAWAGATLITLLVLGINILARNLFRKS
>SEQF1086_CAE41369.1 phosphate transport system permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAVMDNSVPLPSSTADSTTTGTPSPMKQNNNALMDALFKNLTRTFAFLVFILLAAIMISLIYGSRESLAKYGLSFLWLN
DWDPVQQNYGAVVPIIGTLLTSFIALLIAVPVSFGIAIFLIELAPTWLRRPLGTAVEMLAAIPSIIYGMWGLFVFVPVFQ
QYVQPALIATLGSVPIIGGLFAGPPFGIGIFTAGLILSIMIIPFIAAVMRDVFELVPPMLKESAYGLGSTTWEVMWRVVL
PFTKSGVIGGIMLGLGRALGETMAVTFVIGNAFRWSGSLFSPGNSIASALANEFNEAGGIQKSALLELGLILFLITTVVL
AFSKMLLVRLSRAEGRQA
>SEQF1086_CAE41370.1 phosphate-binding periplasmic protein precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFKRVFKQISIGAALSAAVFAAQAADVTGAGASFPYPIYAKWASDYKAATNNAVNYQSIGSGGGQQQIKAKTVDFGASDD
PLKAEDLEKNGLLQFPAVIGGTVPVINIDGIAPGQLKLSGAVLADIFLGKVKKWDDAAIKALNPDLKLPSADIVVVHRSD
GSGTTFGWTNYLSKVSSAWKEQVGEGKAVKWPTGQGGKGNEGVAAYVGQLKNSIGYVEYAYAKQNKLAWTQLQNKDGKFV
QPEQKAFAAAAANADWKSAPGMGVVLTNEPGADSWPVTAATFILVHKSQDKPVQGRAVLEFFDWAFKNGAKSAEALDYVP
LPEAVTTEIRAAWGEVKGADGKAVWQ
>SEQF1086_CAE41371.1 polyphosphate kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTSRPPSEPLLLNRELSLLKFNERVLAMAENPRVPLLERLRYVCIVSSNLDEFFEIRISTLKEQQRQTPTLVGPDGMTAD
EAFERVQVKVHALVASQYALLNDDILPRLQAEGIVLHHASEWNAQQQEWAREVFNRDVMPLLTPIGLDPAHPFPRVYNKS
LNFIVALSGADAFGRQASIAVVQAPRALPRLIKMPPEISGHPDGYILLTSLLRAFVGELFPGLEMLGCYQWRVTRNSDLF
VDEEEVTNLRHALQGELSQRNFGAAVRLEVDKLTPPDLEAYLQREFSLAPEDTYRVSGPVNLSRLMQLCNSNTRPDLLFP
AYLAPVPAPFDRVGEKPAELFAAVAEQDRLLHHPYQSFQPVIDFLTAAALDPDVMAIKQTIYRTGEDSELMQILLAAACA
GKEVTVVVELMARFDEQTNINWAARLEEVGAHVVYGVVAHKTHAKMALVLRREKGRLRRYAHLGTGNYHPRTARLYTDFG
LLTADPRLCEDMDKVFTQLTGLGARRSLKALLQSPFSLHDGMVSLIRAETRAARAGKRARIMAKMNSLLEVQVIEELYKA
SQAGVKIDLIVRGVCALRAGVPGLSENIRVRSIVGRFLEHSRVFYFYADGAETVYLSSADWMDRNFFRRVEIAFPVYDKT
LRKRVIDEAFTYALRDNQLAWQQQADGTYARVRNRREAYDVQEALIQRLGQDG
>SEQF1086_CAE41372.1 exopolyphosphatase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDHLLAAVDLGSNSFRLSIGRVVQQDGTAQIYQIDRLKETVRLAAGLDQDKNLGEDALARALAVLERFGERLRSFHPSRV
RAVATNTFRVARNTRDFLPRAERALGFPIEVIAGREEARLIFSGVAHSLPPSLNRRLVIDIGGGSTEVIIGKGVEPNLMS
SLYMGCVSFSRQFFGDGVVDSHQMKQAELAARREIEVISKQYRKTGWKEAYGSSGTAKALYAILTECGFSTRGITRAGLA
KLKDRIIRSGRVIPAELPGIKLERADVLPGGLAIMSALFDELNIDVMHTGDGALRLGVLYDLLGRDDEHDKRHESVQQFM
KRYHVDANQARRVRQAALALFDVLLPDGDGHERAELRLALGWAADLHEVGLSIAHNAYHKHTAYVLEHADMPGFSNDEQE
LLALLALGHHGKLSKLESLVANRSQWIAILCLRLAALLFRRREDITPLPLAVSIKGTSIVVRAQQAWLNRHPLSDFTLRA
EDGEWSKVGFSFELLET
>SEQF1086_CAE41373.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLELVRIDTGSTAATAWPGAAPRTLAVGLARTAEEVEQIQRLRYDVFTEDMGAVFPQAQDGVEQDRFDQWCEHLMVRELD
TGRVVGTYRILTPEKAREAGGYYSESEFDLSGLGALREQLVEVGRSCTHADYRNGAVIMLLWSGLAEYLRRGGYEYVLGC
ASVSLRDDGVTAAEVWRNVARHLDDPALPRVRPLHRYPIERLNSTLPARVPPLIKGYLKLGAKVCGEPAWDPDFNAADFP
VLLSMAGMDERYRRHFGLDREARR
>SEQF1086_CAE41374.1 phosphoglucomutase/phosphomannomutase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQRKYFGTDGVRGEVGGPVINAAFALRLGYAAGRVLAREHREHASGRGRNRPQVVIGKDTRISGYMLESALEAGLSAAG
IDVLLAGPVPTPAVAYLTRTLRLAAGIVISASHNPYQDNGIKFFSAHGMKLPDDIEAAIEQAVDEPLGCVGSEELGRARR
MADAQGRYIEFCKSTFPHDLDLNGLKLVVDAAHGAAYNVAPHVFRELGAEVHAIGVSPDGFNINKGVGALHPESLAEEVR
ARGADLGIALDGDADRLQMVDGTGRIYNGDELLYAIVRERMQRGPVAGVVGTLMTNYGLERQLQQIGVGFERANVGDRYV
LEQMQARGWLYGGESSGHLLCLDCHTTGDGTIAALQVLTALRRADATLAEWVADLRMYPQRMINVPLAPGLDWKTHDGLA
RARGAVEAELAGRGRVLIRASGTEPKLRLMVEAEDEALAQASAQKLADSLGA
>SEQF1086_CAE41375.1 dihydropteroate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MANNFQCGRFEFDLERPLVMGIVNVTPDSFSDGGEHADTDSAIAHARQLIDEGAHILDLGGESTRPGAQPVSAADELARI
LPLIEGLRDCGVPLSIDTFKPEVMRAVLDAGADMINDIYGFRQPGAIDAVARSRCGLCVMHMKGEPRTMQEAPEYADLMG
EIGVFLGARAQRLRAAWVDPRRIVLDPGFGFGKTMDQNYQLLRRLASLRVSSYPLLVGVSRKSMIGAATGKPVGDRLAGS
VAAALACVARGAAIVRVHDVAATVDALKVWQAAEQGAVPT
>SEQF1086_CAE41376.1 cell division protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNNSFSKVAVWMVIALVLFTVFKQFDGRAQTQDGVSYTQFMDDAKAGRIRKVDVQGDVLYVTPDAGRPYSLTSPGDLWMV
SDLLKYGVQVSGKAREEPSLLMSIFVSWFPMLLLIGVWIFFMRQMQGGGRGGAFSFGKSRARMLDENTNQVTFADVAGCD
EAKEDVQELVDFLRDPSKFQKLGGRIPRGVLMVGSPGTGKTLLAKAIAGEAKVPFFSISGSDFVEMFVGVGAARVRDMFE
NAKKHAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQMLVEMDGFESGQGVIVIAATNRPDVLDPALLRPGRFDRQVV
VPLPDIRGREQILKVHMRKVPLSPNVDATILARGTPGFSGADLANLVNEAALFAARRNGRTVDMSDFEKAKDKIIMGAER
RSIVMPEEERKNTAYHESGHAIVARMLPKTDPVHKVTIIPRGRALGVTMQLPETDRYSMDKERLLNTIAVLFGGRIAEEI
FMNQMTTGASNDFERATAIARDIVTRYGMTDELGPMVYAENEGEVFLGRSVTKTTHVSEATMQKVDSEIRRIIDEQYGVA
RKILEDNRARVEVMTSALLEWETIDADQIDDIVNDRPPRPPKTPQGPSDTFDTPPTGLAAGGNTAAAV
>SEQF1086_CAE41377.1 ribosomal RNA large subunit methyltransferase j [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAKNKFSKDWIHQHINDPYVKLAQQKGYRARAAFKLLEILDAEKLMRRGDVVVDLGSAPGSWSQVARERLAGPGGVVDGR
IIALDLLPMEPVAGVEFIQGDFREEEVLEQLARMVDGQPVDLVISDMAPNLSGVGVADSARIQHVCELALEFACAHLKPN
GALIVKAFHGSGFSQIVQSYKQRFKRVVERKPKASRDKSSETFLVARDLK
>SEQF1086_CAE41378.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPILELTSRERSDLRSAAHPLRPVVLIGDNGLTDAVLKEIDLALTAHELIKVRAGGDDREAREAMLATICDTLSCAAVHH
LGKTLILFRPDLRAAAAKAAADTPAKRRPSEPHTPKKMAAEGKRLTKTRPARKAAEAAAPAAGARPGRDDLNQAGRPARP
STRKASPGHAIPRRSGSALSLRAGARGGLAGRKPARANKR
>SEQF1086_CAE41379.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIVHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41381.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQAVSLPAISGWQWVRDGLRLFMKQPLAMFTWAMAISLLLLFATYTPLVGPLLFVALMPSITLMTLSACKHVEADRVMLP
SMWLQPLKKPGVFKKLFLMGMLYVGLCLAAGLLAFLPFSSSLAEGVRMASANNLAPIMTAMRAPLLVFTALYVIIAAVFW
HAPVLVGWHGLRLLQALFFSGIACWRNKWPFLVYGVVWILVFLFIDLCIGLLIGMGVPDTLAGTLQVPVTIIAGGVLYCS
FYPAYTSVFGVNDAHAGLDNSDSAHA
>SEQF1086_CAE41382.1 homoserine kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAVFTSVSDQDARTLLARFDLGDLVSLRGITAGIENTNFFLNTTRGEYVLTLFEVLTQEQLPFYIELMYHLAARGIPVPQ
PQTLRDGTRLTTLHGKPCAIVTRLPGGYEPAPGPDHCRLAGATLARAHLAGQDFPLRQPNLRGLPWWQATAPKVLPFLEP
GQARLLEAELADQQAHAATALWQSLPSGPAHCDLFRDNVLFAGTFDDPLMGGFIDFYFAGCDTWLFDVAVSVNDWCIVRD
TGEFVPELVHGWLQAYAEVRPFTDAERQAWPVMLRAAALRFWLSRLYDFYLPRPAQTLKPHDPRHFERVLQARHRHPAPD
LPKSEAAA
>SEQF1086_CAE41383.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSPDWRLCVAPMIDVTDRHCRYFHRLLAPRARLYTEMITTGALLHGDVARHLDFDAAEHPVALQLGGSEPDALAQAARL
GRQWGYDEINLNCGCPSERVQRGAFGACLMAEPALVADCMKAMQDAVDIPVTVKHRLGLDYDESYGFVRDFVGQIYDTGC
RVFVVHARNAVLKGLSPKDNREIPPLRYDVARQLKRDFPDCVIVLNGGLADAQAAQAVAGEFDGVMLGRAAWHTPRVLSE
VSLQWWPAIRLPSDAQVVDAMMQYAATQIARGVPLRVMTRPLLGLVNGQAGARRWRRLLSDPVRLAANDPSLLYEAWRSL
QGAPRERDACADPLPAV
>SEQF1086_CAE41384.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWQRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41385.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLKVSEILRVKGDTLYTASPDTHVSVAVQTMSEQDIGSLVIMESGMLAGMLTFREIIRHIDQHGGNVGDTTIRAIMDDAP
VSVSPNTSADEVQRLMLEKHARYIPVMDGPTLLGVISFYDMAQAIVAAQQFENNMLKAYIRDWPMESAPSKP
>SEQF1086_CAE41386.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEPHAESAAAGQAAPPEKRRASWFTRMGRVVRFAGQRADEQKLLQVASSLTFTTVLAIVPMLAVVLSLFTAFPVFQEFRV
ALEDFLANSLMPPSVSDNIMDYLNQFARQATRLTAIGGAFLIVTSLLLIMTIDKTFNDIWQVTRQRPLPQRALVYWAVIT
LGPVVAGASLWATSFVARESLGLVRDVPEAVSVAISFIPLVLTGLGFAALFVVVPNRRVYWKDALVGGFGTAIVLELMKA
GFAYYLTRFPAYTVIYGAFATLPIFLLWIYLSWLAVLFGATVAASAPLIRLGRWEINRHAGAPFIDALGVLRVLHAAQGS
RPAGRSANALAKRLRLHHDELNAVLEALEDMGLVARTAEQRWVLTCDPRTTTLEPVFDRFLLDRGQPRLRDEPEIAAVAA
GVLGQGPDPTLADLAGVAQNTDIGPAAAVLQLETGKK
>SEQF1086_CAE41387.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAELNPTLRRGAVACLLALIVLCVAWETVLAPIRPGGSWLFLKALPLAFPLRGVLRGNLYTFQWAAMLVLLYLMEGVVR
AMSDPAPLSAALGGVEIVLSGGFFLCAILYVRPAKRAARRSRA
>SEQF1086_CAE41388.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKWLRLQDLPTDNSFAALPAEFYTRLQPRPPAAPRLLHANAEAAALIGLDPAEFSTQAFLDVFSGHAPLPGGDTLAAVYS
GHQFGVWAGQLGEVRGPAGGWELQLKGAGMTPYSRMGDGRAVLRSSVREYLASEAMHGLGIPTTRSLALVVSDDPVMRET
VETAAVVTRMAPSFVRFGSFEHWSARRQPEQLRVLADYVIDRFYPECRVAGAGRLDGEHGEILGLLAAVTRRTALLMADW
QAVGFCHGVMNTDNMSILGLTLDYGPYGFMDTFQLGHICNHSDSEGRYAWNRQPSVGLWNLYRLASSLHTLAPDPEALRA
VLDGYEAVFTQAFHGRMAGKLGLPQFLPEDETLLDDLLQLMHQQGADFTLAFRRLGEAVRGQRQPFEDSFIDRAAAGAWY
DRLAARHASDGRAAQARAAAMDEVNPLYVLRNHLAEQAIRAAARGDAGEIDILLKLLRNPYKHQPGYDAYAGLAPDWAAG
LEVSCSS
>SEQF1086_CAE41389.1 probable two-component response regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLVADGLLRIGLLEDDEDFRDELALGLGGYGFNVVCACGDAPSLYRFLQSQSCDIVILDANVPGEDGFSVATRLRAQSTT
GIVMLTGRGALEDRVRGLEGGADVYLTKPVDLLELSSVIRSLARRMRLARGAQGQAPASAGDTQRGVGGWSLQEGGWVLV
GPDGVSLHLNAQERIFMTSLLQSGGDAVTRQMLAEAFQPGNPDDFEPRRVDVMVSRLRAKAQSAGFKLPVLSVRGQGYVF
AA
>SEQF1086_CAE41390.1 probable two-component histidine kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSISRRLFLSVVLLAGLLVIGTQAAGLAANYRASVERQKRHVETAAASLAWVLSQSHTTPAQWQTLATDLQRHGGYALVR
IQEHYTGRMIEAGQLSEAPARADGSLQQGRASQIVATRTFRSADGTYVGSVAVYNPVIPILEAPFLTESVAQLVLIVAGL
LIWYSYMSRLHDRLQRGPLKRLAHNLAHIGQAGVDPKLAEGLPRELQPLGTALVQSHQRVHDQLRQQRARIDALENETYH
DPVTRLPNRKFFNESLRRAVQRDGGVDGHLLIFRQRDMAEINRQMKREATDQWLRLACAQLSKTIKEQAGAGAVLVRING
SDFAALLPGLPSPRAAVLAERLRRELRVLRLPLRTHGWCRWAMVLTPYTVGEQVSDILARLDHALMRAEIAESDEVEPAF
SQTGNRIDGEYGWQDILTRALEQHRFFLTLYPRQDAEGQVLHTEAQLTLRDQDSPEPLHAQLFMPPAARLGLSADCDIQA
IRMSMDQLVARDGDMVVRVSLPSLEQAHFLKRLEDVLRDRPEQAGHLIIEIDAHGLVDYFHNVQALCEIAARTGVRVGVR
RLSEQFAALERLHQLPLAYLKIGGSFVQGITRSPGNQQLADTVIQVARTLDIPAYAEDAEEPVARELLQAIGFRLMQEAD
NADFLAPRHNWIADLPAAPAAAEDNGDTAAHAPTRTRATDGRPWPPHELGMQRKRQEQSDRRLAEVARALEAQRQVHALL
SHELRTPAATISAAAQSLEIILAGSGQEVDSRLARIRRAVTRMIELMNQVLSPERLRDQALTLRPEPIELGELARDTVEG
MRLDTAHPLVLNAEAAVPAWCDPLLTALVLRNLIHNAVKYSPADQPVHIDVGLSYGAHGATAWVAVTDHGPGISDDESQR
IFEEHYRRAAHRETPGSGLGLHLARQICQSQDGTLTVQTQLGQGARFVMTLPTPGQAYTDGGNAQAANT
>SEQF1086_CAE41391.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41392.1 high-affinity branched-chain amino acid transport ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAQSEQDPLLRVDGVTLAFGGVKALTGVGFAVSSGSITTVIGPNGAGKTSLFNTISGFYTPDAGSIHFLGQDITRLPAPR
RARLGLARSFQNIALFRGMTVLDNIKLGRHAHLRSNVLDALLYLGRARREEVALRADIETRIIDFLEIDHIRHAPVAALS
YGLQKRVELARALAMQPRILMLDEPVAGMNREETEDMARFILDARAEWGVTVLMVEHDMGMVMDLSDHVVVLNFGQVIAD
GTPAQVQADPEVIKAYLGAGEVGELRRRLAAQAA
>SEQF1086_CAE41393.1 high-affinity branched-chain amino acid transport system permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDALFFLEVTLAGLGGGALYALAALAFVIVYKATRVVNIAIGEFLMMGAYAFYAFAADMQWPVWAAIGGAILASALLGAL
VERVAIRPMLGESPISVFMITVGLASILVGVVELVWTADQRRLPEFMPRDPVMIGEAFVAPKVFYGFWVAVGLAALVLLV
FRYWRGGVALRATAADQGAAYAMGINVPRVFSLAWAAAGAMAAVARLIVGAIGGISSSMGAFGLSVLVVVIVGGLDSVAG
ALLGGLFIGLVEAWAGAYLGGEYKLLVTFVVLVATLMARPYGLFGTREIERL
>SEQF1086_CAE41395.1 putative amino acids binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLAAPVAQAAEDLVIGGSIPLSGVFAFAGQGIHAGIGDYVKMVNEEGGVAGRKLVYVPEDTAYKVDASVAAFKKIASQNK
VNFYYGDSTGFSKTINAELNRAGTMIMTGASFATELNDPAKYPNQFMLGPDYTEMFGILLRYIAKEQPGAKVAFVYSDTE
FGRDPITSSRAVAEKLGLKVVTEIMTPPGSVDVSTEVIKLRRAAPDYTIFHGYVLAPIPEFVGQGKRMGLKTRYMGTFWT
MDNSTVMQMGEDADGFMGVMPYRYYYDDAADAPMLKKIRAMRPDYQSTGYMQGFLAAMLFAETAKRTLAADKPLTAANMK
ATLDAIKDFDTGGLIGVPISIKGNSIPVGRIYRADAKQKKMLPVSDWIVLD
>SEQF1086_CAE41396.1 high-affinity branched-chain amino acid transport ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTSAAPVLAINNIEVVYNKAVQVLRGLSLEVPRGGIVALLGSNGAGKSTTLKAVSRLLELEDGALVSGAIRFQGSDTAG
RAPQALVRAGLAHVMEGRRVFEDLTVEENLVAAAYALSGRAGARPDFDLVYGYFPRLYERRRGLAGYLSGGEQQMLAIGR
ALIAQPSLMLLDEPSLGLSPMLVESIFSIIARINAEQGVSMLLVEQNASVALAVAHYGYIMETGKVVIGGSAERLAGDPD
VREFYLGVGGGGEARGFRQLKHYKRRKRWLS
>SEQF1086_CAE41397.1 putative long-chain fatty-acid--CoA ligase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRASMHPRAEGLPRGDWPALTLPQMLREQARRQPARIALRQKDYGIWQPIDWATYWRRACQVALGLRAAGLEPGGKVAI
IAENRLEWLLAQMGAGVLGAVPVGVYCTSPAAEVGYVLEHAEVDMVVCEDQEQTDKVLEVAARLPGLRRIVVMETKGLRN
HAEAERARMISFAELEARGAQCGAAEQARLEQALDAQTLDDVGLMIYTSGSTGKPKGVMISYRNMRGVAPGIADRLDMDA
GSVHLSYLPLCHVAEQMLSTFVPVYLGSQVNFGESIRTVQEDLREVAPTVFLGVPRIWEKLHAAISIKMQESGRLRRWLY
ARALRGCAPFLELSRARYGWRERLVYGWHYALILRALHNFVGLRRVKVAMTGAAPIPPEVLRYFRTLGIPLIEVYGLTES
TGMIFGQHPDRVRVGTVGEPTLGVQARVGEQGELLVRGEMVFHGYYRNPQASADTVCDGWLHTGDVVALEDGQYRIVDRL
KDIMITAGGKNLTPSEIENAVKGSPYVKECIAIGDQRRYVAALIQIEYDTVAKWAELNGIAYTHFRSLAEHPRVRQLVHG
EVERANAALAQVARVKRFHLLVKELDHDDGEVTATMKVRRASIAQAYRSEIEALYRQEEAA
>SEQF1086_CAE41398.1 probable TetR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHASSRGTEEAAGSPRRADVIATAGELFRLHGYERTTVRELARAVGLQSGSLFHHFRSKEEILVAVMSEGIEEVLEQGAL
ALAHYQDPGARLAALFRVHMWSMLKGAGGDAMNALVYEWRSLSPAARGGVKALSDRYEDMWQDAVDDALRAGLVDGDARV
IKRYLLGGLNLTVQWYRPQGRLAPGDFIEAMLRAALPGLPPGTGAWPLRD
>SEQF1086_CAE41399.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAALAYLLLSRRARPAAAPRPLRALPAGRRRMPLYLGVAAVLALAGALLSAFLLVTAMAGGSGGGYRGQADFLQQVAIVL
LAIGVVCAIAALVSFFRQRG
>SEQF1086_CAE41400.1 lysyl-tRNA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDQSPAPTAQDENRLIAERRAKLARLRETGVAFPNNFVPDAHAADLHARYDGLDQEALTAAAVTVKVAGRMMLKRVMGK
ASFATLQDGSGRIQIYLERGTLGEEAYAAFKQWDIGDIIAIEGPVFKTNKGELSVHANSARLLSKSLRPLPDKFHGVADQ
ELRYRQRYVDLIMTDATRRTFEARSKAVGGIRQAMLNAGFLEVETPMLHPIPGGAAAKPFVTHHNALDMQMFLRIAPELY
LKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYADYRWLMDFTEDLIRQAAIAATGSAVLSYQDRELDLSQP
FDRLTICEAILKYAEGYTQAQLDDPAFVRAELRKLGANVEGPPLARAGLGALQLALFEETAEAKLWRPTYIIDYPVEVSP
LARASDTRDGITERFELFITGREIANGFSELNDPEDQAERFRAQVEAKDAGDEEAMYFDADYIRALEYGMPPTGGCGIGI
DRLVMLLTDSPSIRDVILFPHLRRED
>SEQF1086_CAE41401.1 probable short chain dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDTVAILTGASRGLGAALARGLLAPGTRLITLARRADPDLEAAARTRGASLEQVQVDLSDPAAAGAAAKRLCAALPRDA
RRYLLINNAGTVSPVAQAAGLTDGAAIAGALNLNVTAVVLLTARFVAALQGLPADRRVLNISSGAGRNPNAGWGVYCAAK
AALDMYSRVLKQEQGQDGVRVVALAPGIVDTDMQGAIRASDPADFPALERFREFHATGKLSAPADVAARILAYLDRDDFG
TTEIDDIRNYQ
>SEQF1086_CAE41402.1 peptide chain release factor 2 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEAERQNQLVARLEDYAEREQALRRYLDYDAKSERLQVVNAELEDPAIWNDPKHAQDLGREKKSLEDVVETLTELGSGLA
DSCELVELALADSDDATLEAIEHDADRFQEKLETLEFRRMFANPADPLNCFVDIQAGAGGTEAQDWASMLLRQYLKYAER
KGFKAEILEESEGDVAGLKSATIKIEGEYAFGYLRTETGVHRLVRKSPFDSSGGRHTSFASVFVYPEVDESFEVEVNPAD
LRIDTYRASGAGGQHINKTDSAVRITHAPSGIVVQCQNDRSQHRNRAEAMQMLKSKLYELEMRNRMTEQQKLEDSKTDVG
WGHQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDPFIQASLKQGV
>SEQF1086_CAE41403.1 single-stranded-DNA-specific exonuclease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVSPRLIIRTADLQACQHLEAAGIHPLLSRLWAARGVIHPEQTRMAWPALLPPDRLTHSAHAAAVLADAIEQGKRLLIVA
DYDCDGATACAVGLRALSAMGADVDFLVPNRFETGYGLSPAVVELACRHRRGKPDIIITVDNGIASVDGVAAANAAGIGV
VITDHHLPGDTLPEALAIVNPNQPGCGFGSKHLAGVGVIFYMMLALRAELRRRGVYAPDGGPRLDALSDLVALGTVADVV
KLDANNRLLVTQGLQRMRAGRMQPGVRALFAVAGREPRTASGFDLGFALGPRINAAGRLADMSLGIACLTTDDEAQTLEM
ARELDNINRERRTIEAEMRDQALAAMEAPDAAAGATVCVFDPGWHQGVVGLVASRLKEKFWRPTLAFAPAGEDELRGSGR
SIPDVHLRDALDLVSKRHPGLIRKFGGHAMAAGLTLGSGDFAAFAPAFDAAVRELTGRDRFEPLLETDGSLESGYANAEV
AGLLQQQVWGAGFAAPLFLDEFTVRSQRLVGGKHLKLALERGHQRFDAIWFGHDQSLPERIQAAYRLEQNIWNGMVSVQL
VIEHAA
>SEQF1086_CAE41404.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALTGTRTTIAAMLIVIPGALPAAAVAPELARLLPQHAPTLHGWLQAASARVQAFDAARQGCTPFEGWQLEQAGYQPQPG
LPLGAGLGPLRAAGGTPGQPVWLADLAHLMLGADQAALLDPALLDLRADESAQLFEAAAPLFADSGFGATPIDAARWRLT
LPAGMAPQTASPAAVAGQRLRAWWTQDVAMRPWRRLLNEIQMVWYEHPVNEARAARGAAPINALWLYGGATPWPAGAPAP
ARVCDELAATQRAGDWAAWLDALAMLDAAQLAPLAGPHGRPVQPLQLLLLGDDRRAALTLKPRAGLARWLPAPKHNWNAW
WSRPV
>SEQF1086_CAE41405.1 lipoprotein releasing system transmembrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARIRQRRGCRDRFISFIAATSMAGIALGVAALIVVLSVMNGFQKEVRDRMLSVLPHIELYIPGAAPERVLQQWRQFAQA
ARANPEVKGEAPFVAAQGMLVRGQALRGVQVRGIDPATEGNVSDIPRQMVSGKLSDLVAGGFGAVLGSDLADGLGVKTGD
TVLMLAPQGSISPAGFAPRMRQFTVVGIFSSGHYEYDSTLVFIDDEDAAKVFRESGTAGVRLRVADMQRAPEVAAELTKV
LPPYVMAADWSRNNRTWFAAVQTEKRMMFLILALIVAVAAFNLLSSLVMAVKDKQSDIAILRTLGAGPGEVARIFLVQGA
LIGVVGTLLGVAGGIAIAYNVDVIVPFIERLLGVQFLPREVYFISALPSDPQADDIITIGLTSLVLSLLATLYPSWRASR
LQPAQVLRHD
>SEQF1086_CAE41406.1 lipoprotein releasing system ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTEPNDTGPALQAEHLGKVYDEGPARIEVLSDVSLSVARGEMVAIVGASGSGKSTLLHILGLLDVPSSGTVSVDGVPAAG
LSEKRKSALRNRSLGFVYQFHHLLPEFSALDNVAMPLIVRRENRDRARAQAREVLELVGLAAREEHFPGQLSGGERQRVA
LARALVTRPACVLADEPTGNLDRHTAHNMFELLTRVNRESGTAFVIVTHDPELAARADRQLHMENGRLQPD
>SEQF1086_CAE41407.1 putative deoxyribonuclease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLIDTHCHLDAAEFDADRMAVARAAREAGVQAIVIPAVERANFATVRQLAHAVDSGAYALGIHPLYVARARDEDLDSLRR
AIESALPDPRFVAIGEIGLDFFVAEIASGAPRERQERFYAAQLDLAAEYGLPVLLHVRRSQDILLKHLRRRPGVPGGIAH
AFNGSAQQAGAFVEQGFALGLGGAMTYPRALQIRRHAADIGLDHLVLETDAPDIPPAWLYEPERRNTPGQLPRIAAELAA
LRGQAVADVARATTTTALRVLPRLGALLQDRAATP
>SEQF1086_CAE41408.1 serine protease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAQASARGMGLRITSLAAALLGVYGAAGAAENRLECIGACPPGQPVAGAHYSGTNLSANREWVVYGEGSNAVFTLQGGSV
TASGGLMGAVNAADGARVYLNQVSVRTDAGNGWEAPGVRAEYGALVNVRGGSIATVGGGSYGVQSLDSGTMIELNGTDIR
TTDAYSDGLRAEFGGSIRAVGLTINTTGEHAVGAMGADDGTIALRDSRITTSGVDAYGLGTESQVLSPGGVLQVSNTAIQ
TSGKNAHGVYLQGGSSLNMSGGSIRTTGSGAAGLRVSNGSSVALNGVEVVASGPSLLSTLSATRQQSIVVGAGSNLTRND
GRLLLVRRVAGGELGQVTLTLKSGSYAAGNIENLAADGSRESSALTIVDVQSGAQWAGLVIDDTTAIVNGSQSGQHSGFS
TAGDMVLEGGSAPVTFTGVSNIGGSSSLGAGSQTTFGGATTIGQSLAVLPGGSVAFNGPLTIGESVTEGQGTALSFNAPA
IIGANVQGAGGAAFTFSGPAQVGGSVQGLDGASFRFSTSAPTAIAGGLSLAGGSSLGGGSPTTPIVVIGGADAVSGAILG
GNLDIGGALRMTGASLAPGNSIGTVTVGSVGALSGSTYLAEVNAKGQSDLLVVRSGNVDLAGVSLVVGQENGTGGYVLNH
DYTIIKTEAGKIVGEFAAASLDESLASTLVKLDPVKYGAQATQVSLSPDADKLAAARAGLIRNQSAVLDGALSVAGRNAS
ADAVMLMSDTGQRADALDQLSGEVHGSAVSALYSNTQLLNRTVARRMSANLGAGLLAGAPTAQAAGPAAASAMPGTAAYP
LWADVVDNWSSFDAKDNAAKAKSNTAGLFIGGDAAVGAGWRVGGALGFTDGRIKADAVDSRSDVTSYTAALYGGNSWAAG
KGKLNFLAGVGYTHHDIDSRRSVDVGGAQTLKADYKANTTQLFAELGYQVPVGASSSVEPYAGLAWFNNHSDSFDEDGGP
AALHGSGQTDQITTFTLGLRGNTALQLGATETRLSAGLGWRHANGDVDATRKLAFIQGGGTAFTVAGSPVAREAAVLDLA
AEVDVGRNAALGLAYGGQFGNGNKENTGSLYLKVRF
>SEQF1086_CAE41409.1 hypothetical protein BP1111 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGAFCLFEECVAGIASRHPQWADVALPGDIQAEVLPRAPLPVHGAPAARYPGLFDVPD
>SEQF1086_CAE41410.1 putative outer membrane ligand binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNKNIYRVVWSLVRGAWVVAGEWARAGRKSSSPRRQNRQRARRGVAAMVGGSILAQALLPLSALAQGAPTLRPARVAQEE
AGQDAAWTRKLAAQAESLARRQAERQPGARVDGDYLKREAQAQVNDVLRDGVNLARESGLPFLRNLQGGLSHDFESGRTS
LQLNTIDEVYRAGRNTGLLQLGAHNQNDRPTANAGAVYRREVNDALMVGANGFLDYEFGKQHLRGSVGLEVIAPEFSLYG
NVYAPLSDWKGAKRNNRREEKPASGMDVGVGYRPAFAPGLSLSATHFRWNGAEVDYFDNGRTQAGAKGFKVGVEYRPVSL
VSVGLEQTKVIGGGRETRMQLGLNINLSEPLSKQLRRDASGTPAFSPDARRHALVERENRIVLNTRRKEIILPLVVSKVS
TLQADGRVTVIGATQPFATVTVRMPDGMTGTATADASGRFAYTSAGDQPSGVLALRARNAEGDSSREVTYRYVDEVVLGD
LQVAVMALVPLPADRALEVRGKTEPKVDVKVSFSNGESVLAKADAKGLFTVRSTRKVTQGKVLVQATHPQTRKEARAVAD
YLPPATLAPTIDAVTAQADTGRVTVTGQAEPGAQVDVHFPDGTAKTVDAGADGAYAATSDGDMVSGDIHAQATDKAGNQS
PEATRHYGDTTDITPPAAPTIANVATDATSGRVTAAGMAEPGANVTVNFPDGTRKTVVAGGDGAYTATSDRDMVSGDIRV
QATDKAGNQSPEATRAYADAVDRTAPEVPTVTHVATDAKSGRITVTGMAEPGANVTVNFPDGTRKTAVAGGDGAYTATSD
GDMVSGDIRVQATDKAGNRSPEATRAYADTVDTTPPAVPTITDVTTDATNGRITVTGVAEPGANVTVDFPDGTRKTVVAG
GDGAYTATSDRDMASGDVRVQAIDKGGNRSPEATRAYADTVDKTAPAAPTITNVTTDAASGRITVTGMAEPGANVAVNFP
DGTRKTVVADGAGAYAADSDGDMVAGDIHVQATDKAGNRSPEGTRAYVDTVDKTPSAAPTIVRVTTDRSSGVVTVAGTAD
PDNDVTVQFPDGGRKTVKAGKDGSYSVTSDNDIFSGIIQVSARNPAGNASPEVRQDYRDEFVPANAITNIETNSRNGIVT
VSGKTSPDATVVVSFPGGDEARTRAKGDGTFSVSSPMDIPRGVVSLSTEVNGVQTVVATRTYEDKFTKGGLDFTAFLPYT
PKFNGVSTSDTSAVLLSIPRYFYSGGAPVAKIMPPEADGSEFAKRAAAAMRAQVTPGRDSSEYDVRVSWPAGTFTPADVG
QRADLAVKVFDKGTGKYMLLLAPVNFPY
>SEQF1086_CAE41413.1 probable hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQEPRLDFVTCASPTGFHRMAYWEWGDPLNDRVLVCVHGLTRTGRDFDHLARRLAGQWRVVCPDVAGRGKSDWLSNPALY
AVPQYVSDMATLIARVWPATLAWVGTSMGGLIGLGLAGAATMMRLARAMRPRPDGLPAQADDLRLHRLVLNDVGPRLNVE
VLQRIAGNVAAQDSYSTFEAAVAAMRQISTTFGPHTDAQWDELARHIYVRQGGGWVRHFDPALAVPLGAQVAQAFEAGER
ILWQAYDSLDCPVLIVRGQDSDLLSAATAGEMLARNPRARLHEVPGVGHAPTLMTPEQIEPIARFLQE
>SEQF1086_CAE41414.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNIAAPNVDLHCHSTVSDGSMPPAAVARRAHANGVDVWALTDHDEIGGVAEAAQAAAALGMRFVAGVEISVTWAGLTVHI
VGLRVDPANEALVQGLRDTRAGRAARAVQIGERLAGLGMPGAYEGALPFAGNPELISRTHFARFLVEAGYCPDVQTVFNK
YLGDDCPGHVPMQWASLAEAVGWIRGAGGCAVIAHPGRYKYSPMQFDALYDEFLQLGGTGIEVVTGSHTSEEARRYAEVA
RRHGFLASRGSDFHSPTESRVDLGRLPPLPPDLKPVWHDWF
>SEQF1086_CAE41415.1 transcription elongation factor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNKAFVKESDRDDEDDLPEAQALPAGTRNYMTPQGYARLRDELSHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRL
REIDRRMRFLTKRLDIAEVVDPAAQPNRDQVFFGATVLYMDRAGEERTVTIVGVDEAEPLAGKISWISPVARALTKAHEG
DTVTLRTPGGVEELEILEVRYPDA
>SEQF1086_CAE41416.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLAGLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41417.1 serotype 2 fimbrial subunit precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLPMQIPFQRALRLCLRAALAAIASAAHADDGTIVITGTITDTTCVIEDPSGPNHTKVVQLPKISKNALKANGDQAGRTP
FIIKLKDCPSSLGNGVKAYFEPGPTTDYSTGDLRAYKMVYATNPQTQLSNITAATEAQGVQVRISNLNDSKITMGANEAT
QQAAGFDPEVQTGGTSRTVTMRYLASYVKKNGDVEASAITTYVGFSVVYP
>SEQF1086_CAE41418.1 NADP-dependent malic enzyme [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDENLTKLALDYHAYPTPGKISVTPTKTLANQDDLSLAYSPGVAAACMAIFDQGNDAASKYTSRSNLVGVITNGTAVLGL
GNIGSLAAKPVMEGKGCLFKKFAGIDVFDIELAENDPDKLVDIIAALEPTLGGVNLEDIKAPECFYIEKKLRERMNIPVF
HDDQHGTAIISSAAILNGLKVVGKDIGQVKLACSGAGAAAIACLDLLVHLGIKREHIYVVDSRGVIWEGRDENMEPNKRR
YAQKTEARTLADVVNGADVFLGCSTAGVLTPEMVKTMAAQPLILALANPEPEIRPELAKAARPDCIVATGRSDYPNQVNN
VLCFPFIFRGALDAGATRITEEMKLACVKAIAELAQAEQNDEVARAYAGQELSFGPDYIIPKPFDPRLIVQIAPAVAQAA
ADSGVATRPIEDIEAYRQKLMGFVYHSGQLMRPLFQQAKQAPKRVVYADGEDERVLRAVQTVIDEKLAEPILVGRPSVIE
MRIKKFGLRMVPGQNVEIVDPEDDSRFNDTWNGYYQLRGREGVTPAIAKAMIRKHNTLIGAMLLRRGDADALLCGVASKY
DNQLKYVEEVIGRKPGQTYGALNVLMLPNQTLFVTDTHVNENPSADEIANITIQAAEEMLRFGVMPKIALLSHSNFGSRP
TDSSRKMAHARKLVAERAPHLEVDGEMHADAALSESIRLQAYPDSTLKGRANLLVMPNLDTGNITYNMLKMTGSNGIAMG
PILLGSARPVHILTTSATVRRIVNMTALAVVDAQQEAAEG
>SEQF1086_CAE41419.1 pyruvate dehydrogenase E1 component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MCNAQAGATPPQIPDPDPVETAEWCEALDSLTQAGGPERAAYVLQQLLARATALGVRAPGITRTAYLNTIAADQEPPFPG
NLSLEERIASINRWNALAMVVRANQAHGELGGHIASYASAADLFEVGFNHFFRAPAPGFGGDLVYMQPHSAPGIYARAYL
EGFLNDVDLAHFRQEITAGAQGLRGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLEHRSLAMPSDRKVWGIF
GDGEMDEPESIAALTLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELETLYAGAGWNVIKLVWGGDWDALLRRDPDG
VLAGTFSHTVDGQFQTFAANDGAYNRQHFFGQDPRLSALVADWSDEAIDRLRRGGHDMVKIHAAYHRATHHRGQPTVILA
QTKKGFGMGTAGQGKMTTHQQKKLDDEALLAFRDRFALPISDADCLALKFYKPAEDSAELRYLESRRAALGGYLPRRRTE
APRLAPPPVADWARFALQAAGKEMSSTMAIVRMLTALLKDPQLGPRIVPIVADEARTFGMANLFRQVGIYSAQGQLYEPE
DIGSVLAYREARDGQILEEGITEAGAISSWTAAGTSYSVNGLPMLPFYIYYSMFGFQRIGDLIWAAADQRTRGFLIGATS
GRTTLGGEGLQHQDGYSHLAAAAVPNCRAYDPAYAYEVAVLVEHGMQRMLDEQCDEFYYLTVTNENLAQPDMPEGEETRT
GILRGMHRVRAADATPQVRLLGAGPMLDEAMRAAQLLRDEHGLDAEVWSVTSFSELARGGRGAERAQALGLPCPDGNWLA
QCLGDQATPVVAVSDYVRAVPEQIRAWVPGPYRVLGTDGFGHSDTRARLRDFFEVGAPWIVLHALDLLAREDSAWQPALQ
ARREQLQAATRNVPSWQS
>SEQF1086_CAE41420.1 AsnC-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPPHALDAIDRRILDLLQTDASLTNVELARRVHLSPSPCLARVKALEAAGIIRGYVALADPAQLGLNLNVFIQVSLEKQV
ESELERFQGAMADCPEVMECYLMTGDADYLLRVVVADMPGLERFIVNRLSRIPGVKNIRSGFALKQVKYQTALPLRQGSG
PQ
>SEQF1086_CAE41421.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADATRIPDSVTLPELTLRGVLLGALITVIFTASNVFLGLKVGLTFSSAIPAAVISMSVLRMFRDANILENNMVQTQASA
AGTLSAIIFILPALVMMGHWQGFPFWQTLAICGAGGMLGVMFTIPLRHIMVVQSDLPYPEGVAAAEILRVGSAEAPDTAP
GRRGASGMGDILAGGGVAALVSLATGGLRVLGDSFSWWGQLGASVFRLPMGFSLALLGAGYLIGIVAGVAMLVGLLIAWL
VAVPVLTATTPMPDGQSISAFANSLWASQVRFIGAGVIGVGAIWTLATLFMPMVRGVRTSFAAFGRSGEAAYGSAPRTER
DLPSRWISLITLALVAVLVGVFAAFLQPAVLSPGARWGLVAYAVVFAFVFGFLVAAACGYMAGLIGSSTSPISGVGIVAI
VLVSLLMLAIQRGDGLLATPQGLQMGIALAIFTTSAVVAVASISNDNLQDLKTGWLVGATPWRQQVALLIGCVVGAAVIS
PVLELLYNAYGFGDALPRPGMDPSQALAAPQATLMLAIAQGIFTHQLNWTMILIGMGVGVALIVIDQVLRRTCRVARLPV
LAVGIGIYLPPSASAPIVVGAVLAWLLEGALRRRAAAAGQDYERYAEGPNRRGVLVASGLIVGESLVGVLLAAVIGATGD
EAPLAVVGAGFGPTAEWLGFVVFAAVAVWIYRRVVRTRPEQA
>SEQF1086_CAE41422.1 2-oxoglutarate dehydrogenase E1 component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTESESLSTSYLFGGNAPYVEELYESYLDNPGSVPDNWREYFDQLQHSPATDGQEATRDQAHAPIVESFAQRARANAFV
QRVAEPDLSVASKQVSVQSLIAAYRSLGSRWADLDPLKRQERPAIPELDPAFYGLTEADLDQVYSATNTYFTTASTMTLR
DILKALRDTYCRSVGAEFMHISDPAAKRWIQQRLESTFSAPVFSTEEKRHILQQLTESEGLERFLHTKYVGQKRFSLEGG
ESFIASMDEVVNHAGESGVQEIVVGMAHRGRLNLLVNIMGKMPGDLFAEFEGKHAEGLTDGDVKYHNGFSSDLSTRGGPV
HLSLAFNPSHLEIVNPVVEGSVRARQERRGDGEGKQVLPVLVHGDAAFAGQGVVMETLNLAQTRGYGTGGTLHIVINNQI
GFTTSDPRDSRSTLYCTDVVKMIEAPVFHVNGDDPEAVVFATRLALDYRMQFRHDVVLDIVCFRKLGHNEQDTPSLTQPL
MYKRIGHHPGTRKLYADKLTTQGVLAEGDADQLVKDYRQLMEDGQRTIEPVLTDYKSKYAIDWSPFLGAKWTDQADTAVP
LAELKRIGERITTVPEGFTVHPLVAKLLNDRRNMAKGEVNLDWGMGEHLAFATLVASGYAVRITGQDSGRGTFTHRHAVL
HDQNRERWNDGFYVPLQNVSEGQAPFTVIDSVLSEEAVLAFEYGYSSAEPNTLTIWEAQFGDFVNGAQVVIDQFITAGEA
KWGRQSGLTLMLPHGYEGQGPEHSSGRIERFLQLCADHNIQVVQPTSAAQIFHLLRRQMIRPFRKPLVIFTPKSLLRNKD
AGSPLTDLAGGSFRPVIGEVDESIKAASVKRVLACSGKVYYDLVNARRERGADHVAIVRVEQLYPFAHKAFETELRKYPK
ATEVIWVQDEPQNQGPWFYVQHHLYENMADGQKLGYAGRAASASPAVGYLAKHQEQQKALIEQAFAAKYKGFMLTK
>SEQF1086_CAE41423.1 dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAITDVLVPQLSESVSEATLLTWKKQAGAAVEADEILIEIETDKVVLEVPAPSSGVLSEIVMGDGSTVTSGEVIARIDTA
AKAAAAPAAAAEAPAAAAAPAAAAPAAASSAASGVASPAAAKILAEKGVDAASVAGTGRDGRVTKGDALAAGNAPAAKAA
APVAPPTLSLDGRPEQRVPMSRLRARIAERLLQSQAENAILTTFNEVNMQAVMDLRARYKDKFEKEHGVKLGFMSFFVKA
AVAALKKYPVLNASVDGKDIIYHGYFDIGIAVGTPRGLVVPILRNADQLTIAEIEKTIADFGKRAADGKLGIEEMTGGTF
SISNGGVFGSMLSTPIINPPQAAILGIHATKERPVVENGQIVIRPINYLAMSYDHRIIDGREAVLGLVAMKEALEDPQRL
LLDL
>SEQF1086_CAE41424.1 2-oxoglutarate dehydrogenase complex, E3 component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKQFDVVVIGAGPGGYIAAIRAAQLGMSVACIDAWQNGQGGPAPGGTCTNVGCIPSKALLQSSEHYEQANHHFAEHGIE
VKGVSLKLDTLIGRKNTVVKQNNDGILYLFKKNKVTYFHGKGAFAGQVDGGWSIKVTGTTDADLVAKHVIVATGSSAREL
PGLPFDEKNILSNDGALNIGAVPKKLGVIGAGVIGLEMGSVWRRLGAEVTILEAMPEFLAAADQQVAKEALKSFAKQGLD
IQTGVKIGEIKAAAKSITVPYVDAKGAEQKLVVDKLIVSIGRVPYTGGLNAEAVGLKLDERGFVAVDEDCKTNLPNVWAV
GDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFATVPWVIYTSPEIAWVGKTEQQLKAEGREYKAGSFPFMANGRARALG
DTTGFAKVIADAKTDEVLGVHIIGPMASELISEAVTIMEFRGAAEDIARICHAHPTLSEAVKEAALAVDKRTLNF
>SEQF1086_CAE41425.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MCNPPLCFGFSGCDMNVREYYEHALAERGYQPDEAQLQAVERLQRYYDEWVRFKALRSNALKKLLNRLDVPRGVYLWGGV
GRGKSFLMDAFYATVPVVRKTRLHFHEFMRGVHRELEEVKGTQDPLDEVARRLARRYRLICFDEFHVSDVADAMILYRLL
LKLFEHGTSFVMTSNYEPSTLYPDGLHRDRILPAIALIQGRMDVLNVDAGIDYRRRSLEQVQCYHTPLDAQARQALEHAF
AQLSDTAPQDPVLHIEHREIRAQALAGSVVWFDFATLCGGPRSQNDYLELANRFHAVILSDVPRMGPRQASEARRFTWLI
DVFYDHKVKLIMSAEVEPEQLYTEGALANEFHRTVSRILEMQSREYLEAERRLAVTL
>SEQF1086_CAE41426.1 3-oxoacyl-[acyl-carrier protein] reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAANRTALVTGAARGIDLAIATRLALDGHPVIMLDASPDVQASARALAGRGLRAHGMRLDIADEQAVRDLPRRCGQWWE
NLAIVVNNAGISPKHEGRKRKVADMPLDEWRRVLDVNLTGTFLVTQTCLPALIAAGWGRIIMITSQAARTRTPVPGAHYS
ATKSGMTGLARVLAGEVAEHGITVNCVAPGRIQSAMTAEVGGAVNASHSATVPLGRLGLPEEVAATVAFLASDGAGYTTG
ATIDVNGGSFML
>SEQF1086_CAE41427.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MELRHLRYFLMLAETLHFGRAASRLGIAQPPLSRQIRDLEEQVGATLFYRGTRGVSLTDAGVAFAQRAAQIVAAADEAVF
EAREAGQGRTGRIVIGFVHSLAYSLLPRVLPGFRQKHPGIAVSLREVTVADKESALLSGQIDTGIYRPTVRHPEIATLPI
FEEGFVLALPSGHPLARKRRVSVHSLRDQPLILFRALRGDVGLHGTIAAFLRAHDVPVKACEEVGTIHAGMGLVLAGVGV
CIIPETSRMVHIEGVVTRPFAEATTRVSSTVCWRHQDSSRSLDAWVRHVRELIRTGESAG
>SEQF1086_CAE41428.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41429.1 putattive exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTFITLRAQACLAALLALAGASGAMAAGYPAQPIRLIVPYAAGGTTDLIARLVGQHMGTKLGQPVIVENKAGAGGNIGTE
QVSRATPDGYTLLLGTAGNMTVNQAIYKDMAFDPNKDFQPISLIATLPNLMVVNKTVPAQTTKEFVAWAKENPKTVFFAS
SGVGSTTHLTGELFNMATGLHMEHVPYKGSGPALIDLVGGTGPVVMFDNMPSAIALVRDGSLRALAVTGPDRESSAKDIP
TVKESGYPDFDVVTWFGLFAPAGTPADVVQKLNKTVQEVVHSPQVSKRLSELGATPKTNSPQEYATIMKDDTAKWAKVVK
TANIVKP
>SEQF1086_CAE41430.1 probable short-chain dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRAQGYTLITGATRGIGRAIADLLAARGEPVMGIARSGDAGFPGPLLQADLLDAAQRREVLREAASHGVLRLVNNAGFN
QMQPLGEITDAATSAILELNIAVAIDAAQAVLPGMTEAGAGRIVNIASRSLLARPGGSVYSAAKAAMVGLTRSWALELAT
RGITVNCVAPGPVATEMFQRNNPPELARSRALVEAIPVARLGTPEEIAHAVDYFLAPHAAYTTGQTLFVCGGASISQIKL
>SEQF1086_CAE41432.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR
>SEQF1086_CAE41433.1 ECF-family sigma factor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPASLITSPSARPAADTAAVEGLYRQHRSWLAGWLRRRLGCPHRAEDLTQDVFVRVIQGRKAVRMEQARALLATIAKGLV
IDHQRRAALEHAYLEYLAAQPSGHAPSPQQQAELLQALVELDRLLEGLPPHARAVFLMSQLEGLGYAEIAQRLRISLSSV
QQYMLRAMSACYMAFHE
>SEQF1086_CAE41434.1 putative signal transduction protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRPAAPDAVAQQAIAWWVRLQSGCAAAAEHEACRAWLARDKAHQRAWDRVATLAAGIRRAPAAPALAILPDLASRGPSR
RQALRLLAGLGVGAAAGAGAYSWAPWQRLVADASTGVGERRQIVPGPGVRLVLASDSAVRLRIDATRRAIALLRGEMLVD
VHSGAAQPALQVDTGYGMALAEQARFGVCRAGGSARIGVYAGSVQVASAPHAPWHRGEAGESLRLDGAGVPRRGRVAADE
SAWEDGLLVVHGWRLDRLAAQLARYRLGVIRVDPAVAGLRLSGVFPLDDAERALAAVRQSLPIEIRRHTAYWLSVTPRAA
>SEQF1086_CAE41435.1 putative ferric siderophore receptor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFSRSQKHPSWRLSPCVLAAALCAVAVGSADTARAQAPAASAQHYEIAAGPLADALTRFARRAGVVLSFDPALVQGRSTA
GLQGVYGVRDGFAALLAGSGLQARAGGGNNWSLAALPRGGDAQTLAPVTVLGLEGALAPTVGYVASASLSGTKTDTPLIE
TPQSISVVTRDQITEQGAQTLNQVLRYTAGVATETRGATATRLDQFSVRGFSAATYLDGMRVFGGRDALPQVDAYRLERV
DVLKGPASVLYGQGGPGGVVNQVSKRPLDEPLREIEVQAGNFDFRRVNMDFSGPVDEDRRFLYRVTGAAYMSDGQVDHTR
ERRYFVSPSFTWRPSADTTLTVLTNFQRDPDMGSYGSISAMRTLLSAPDGRRLGPNHYDGDADFEKSDRRSYSLGYQLEH
RFNDTFKASQNLRFQHAEGVYRSIYGASNNNYGYLDKDYRYSQRGLAISDVDVDAFTIDNNLQARFDTGALAHTVLVGFD
YQRVQTDTLSGYGSAPPLDVFDPDYHMGIERPPFTSDQTQYNYQTGLYLQDQIRLDRLSLLLGGRYDWSRTHTGTDNLAN
GSHSSSALAAEAFTGRVGAIYNFDNGVAPYASYSESFEPQTGTGWNNTPFKPTEGKQYEVGVKYQPPGSATLLTLAAFDI
RRKNLPTTDPDPTHMCGVSRCSIQAGEVRTRGIELEAKTEPLRGLSLIAAYSYLDNEYEKAYPNTTGLDLKGKKPVAVPA
HQASAWARYQLQEGPLAGLGMGAGVRYIGSSYANETNTLKVPSVTLVDMMLDYDLGRASPALKGMQVALNVSNLFDKEYI
GSCLSDSWCWYGYQRSIKASLRYRW
>SEQF1086_CAE41436.1 putative iron uptake protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKAPAAGAHMLHYRFAVTSRALAAILGGYALSSAAAACLAVWLPMRRVDAVVAALMLSFVVYTCAVLWVFATRNAWRAWA
GVLLPALALLMLYWLGKAAGGA
>SEQF1086_CAE41438.1 putative iron uptake protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLNATAFCLAYAGFAALSLGMDRHYEDVFDRALPRRRRLALRSLEWLGLALSLWASAGAWGWNYGTVEWIGILSLAGLLL
IWLLTFWPRAALGAGGACALAAPVLALL
>SEQF1086_CAE41439.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE41440.1 tryptophanyl-tRNA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTRVLTGITTTGTPHLGNYAGAIRPAIQASTQPGVDAFFFLADYHALIKCDDPARVARSRLELAATWLAAGLDPERVTF
YRQSDIPEITELCWLLTCVTPKGLMNRAHAYKASVDQNAAKGVEPDDGVTMGLFSYPVLMAADILLFNANQVPVGRDQVQ
HLEMARDIAQRFNHLYGREFFVLPEVVIAEEVATLPGLDGRKMSKSYNNTIPLFEGGAAGLRNATQRIVTDSRLPGEPKD
AEASHLYMLYRAFSTQQESMAFRRQLEEGMGWGDAKQALYERLERDLAPMRERYVELISNPGLIEDILQVGAAKARKLAQ
PLVRTLRDAVGLGVLQPAAAKAAQPARKAAKDARFVSFRDEDGSFRFRLLAADGEELLCSVPFANPKEAGALMRRLQDEA
PEQALRGHDDVSYAAWLDGKEVAYGPQAADAGARDALLAKAREALAQLAAA
>SEQF1086_CAE41441.1 transcription accessory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPETSATTNAAPGVDHARIIAQLATEIGARASQVASAVELLDDGATVPFIARYRKEATGGLDDGALRTLEVRLGYLRELE
ERRGAILESITQQGKLTPELQQEIATAETKQRLEDLYAPYKPKRRTRAQIAREAGLEPLADAILADPACDPAALAAQYLN
PEASINDAKAALDGARDILAERHAENADLLADIREHLWSTGLLYSKMVEGKETDGANFRDWFDFNEPLRTLPSHRILALM
RGRQQGVLELRVGLEADLEAETPHPCVVRIASFLKLGNGLFALDATPRARWLGEVCRWTWRVKLLTAFESELFGRLRESA
EAEAIRVFAANLKDLLLAAPAGPKTVLGLDPGIRTGCKVAVIDRTGKVVDTATVYPFEPRRDREGTIKTLAALAARHKVE
LIAIGNGTASRESEKLVGDMMARFPDLALTRVVVSEAGASVYSASETAALEFPDLDVTLRGAVSIARRLQDPLAELVKID
PKAIGVGQYQHDVNQRELARSLDAVVEDCVNAVGVDVNTASAALLARVSGLNTLLAKNIVAWRDENGAFPTRDMLRKVPR
FGEKAFEQAAGFLRIPNGDNPLDASAVHPEAYPVVERIVARIKADVRHIIGQREALKGVSPSDFTDERFGLPTVRDIFAE
LEKPGRDPRPEFKTAQFKEGVETLNDLFPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTV
TVKVLEVDVARKRVALTMRLNDAAEPARRGNGAGAGAARGADRGARRPQADNGKGAPANSAMADAFAKLKR
>SEQF1086_CAE41442.1 probable ATP-dependent helicase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLDLDISEFFADDGPLARAMPGYRPRQSQVELAQAIDSAIAARATLVAEAGTGIGKTWAYLVPAFAQGGKVLISTGTRTL
QDQLFARDLPKVRQALAAPVTAALLKGRGNYVCHYHLDRLQGDDRALKSRAEIGQLRQIQVFAGISKTGDRAELAQVPED
ADIWQRVTSTRENCLGQECPRIRDCFVVKARRQAQEADVVVVNHALFMADLVLREEGVTDLLPEVDTVIFDEAHQLPDTA
TRFLGSSVSTHQLLDFARTLEAAGLAYAREAAKWSDVGRQVETAARELRLACAPLERLPGRKATFEAMPDPDEFDAALAS
LREVLDAAVRALSGVAEKHPDLAAAARAGAEISVRLSRWATPPRHAAQAAEHDEGWGRDDQGVAVAAPSEALLAEAAAAA
NWSGPAVRWVEHGQHHVRLHAAPLSVAQAFSRYRKPGQAWILTSATLSVYGDFGHFTRQLGLEDARTGRWESPFDYPAQG
LLFVPRDMPEPQSPRFVERFVENLLPLLEASPGGALVLCTTLRAVDKVAQLLTDAFADAGHDWPLLRQGEATRRDLLERF
CKLEHPVLVGSASFWEGIDLPGDVLTLVAIDKLPFAPPDDPVIEARLRACRLRGGNPFAEYQLPEAAISLKQGAGRLIRT
ETDWGVLMVGDARLVEKPYGKRLWRGLPPFARTRDMNEALAFYARMGEAEP
>SEQF1086_CAE41443.1 competence lipoprotein precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALRAAIALSTILIVAGCGSSSTKYDKTAGWSAEQLYADAKQEVAAGNWTDARERLTAIESRYPFGTYAQQALIELAYVN
WKDGENEQALAAIDRFQQLYPNHPGTDYVLYLKGLVNFTPASAFMSNLTGQDPAERDPKGLRASYDAFNELVQRFPNSKY
TPDAQKRMTWLVNAIAMNEVHVARYYYERGAYVAAANRAQTVITDFEGAPASEEALYIMVESYDKLGMTELKGDAERVLD
QNYPNSKFKTQGLSADKSWWNPFSWR
>SEQF1086_CAE41444.1 ribosomal large subunit pseudouridine synthase D [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDTAASVDLLSDDEPLLLTVPPDTPADRLDKVLAGLLPGHSRSRLQGWIEAGYVLVNGAQAKVRQAVGPGDVLSVWEQP
APESRAFAPEPVAFDVVAESPDWIVVDKPAGLVTHPGAGNWSGTLLNGLLHRYPELARVARAGIVHRLDKDTSGLMVVAR
NERAQTHLVRQLQARTMGRQYIALAHGWLGAAGTVDRPIGRDARVPVRMSVERPIAPKPAVTHFDPRRRGCAEGGARVSE
VLCRLETGRTHQIRVHLASLGHPLLADTLYGGKPLAGATRQMLHARALHFDDPGGAGEVSFEAGVPADMSDVQEALAWNA
>SEQF1086_CAE41445.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNYFCTTRAGGAGVAPHDTLNLGLRAGDRPETVAENRRRVRAAVPAEPLWLRQVHGHEVVDADAGPPHEPAADASVTAAP
GRVLAIMVADCLPVVIADQDGTVLGAAHAGWRGLAGGVLENTLRAMQAKVPDARGWRAWIGPGIGPAAFEVGADVLQAFA
ADGPEAAALFAPRPGLPGKWLADLPGLALLRLRRAGVQAQSCGLCTVQDSRFFSYRRDRETGRMALLAWLDAR
>SEQF1086_CAE41446.1 poly-beta-hydroxybutyrate polymerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAHLSAAWPVPVSVAPDALAEIQADFSREWLRLCDEAKRGVLGAPADKRFAGAAWLDDRQRLLMAHAYLLSARAMARLV
EAAQVSEPMRNRLRFSVMQWVDAMSPANFLAFNPDAQRAIVESAGRTLQEGMANLLNDIQRGRISQTDETQFEIGRNVAT
TPGHVVFENSLMQLIQYAPQTAKVCERPLVIVPPNINKYYILDLQPENSFVRYAVEQGHTVFIISWRNPLAADTDGVDTA
TWSEYLDDAVLKALAVASDISGQPQVNALGFCVGGTMLASALALAQVRGERPVASLTLLTSLLDFHDTGILKVFVDEAHA
LLRDHQYGQRGLMPARDLATTFSFLRPNELVWNYVVSNYLKGKTPPAFDLLFWNADSTNLPGPFFAWYFRNTYLENNLKV
PGRARVAGVPLDLTRLDMPTYLYGSREDHIVPWPSAYASTQLLRGPMRFVLGASGHIAGVINPPAKQRRSYWVNESAGAV
SHDLPGDPNAWLAGAVEHAGSWWPDWTSWLAGHGGKQVAAPAQAGNKRFRPIEPAPGRYVKVRAV
>SEQF1086_CAE41447.1 acetoacetyl-CoA reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGKLAYVTGGMGGIGTAICQRLAKDGFRVVAGCGPSRNYQQWLDEQAAQGYTFYASVGNVSDWESTVKAFERVTADLGQ
VDVLVNNAGITRDGLFRKMSVDDWRAVIDTNLNSLFNVTKQVLDGMVERQWGRIVNISSVNGQKGQFGQTNYSTAKAGIH
GFTMALAQEVASKGITVNTISPGYIGTDMVRAIRPDVLEKIVATIPVRRLGTPEEIASMTSWLASDESGFATGADFSLNG
GLHMG
>SEQF1086_CAE41448.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQAQTGAALRLIKKYPNRRLYDTQTSTYITLADVKQLVLANENFQVVDAKSGEDLTRSILLQIILEEESGGMPMFSSNM
LAQIIRFYGHAMQGIMGSYLEKNIQAFMEIQQRMAEQSKGLYGSQFGPEAWTQFMNVQTPMLQKMMNNYIDQSKNLFVQM
QDQMQDQTRAMFSNFPFTPPGGDGPQGGRGK
>SEQF1086_CAE41449.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMKKALLLALALSLPGAAFAAEYPIGKPAEKGGMEIGAVYLQPIEMDPPGMMRAAKDSDVHLEADIHATAGNATGFPEGE
WVPYLVVKYEVQKVGSDKVQKGTFMPMVANDGPHYGDNVKLDGPGKYKLKYTIMPPTADKMNHFGRHIDKETGVGPWFEP
FDLEYEFVFAGTGKKGGY
>SEQF1086_CAE41450.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRAPAAALLAMALGLGAPLAARAADLPTFTLTFQPDGTFEPARLEVPAGRFKIELINASNEPVEFESIPLRKEKVLGPGV
KSFVVITISRPGEYPFFDDFHQDVKGTLVVKPKD
>SEQF1086_CAE41451.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEQVLFIVWRESVEALLVVGILYAWLRATPAGRRGMPYLWGGVAAGLALALLLALVLLGVSSWLSDEGQEWFQAGMSLVA
CALVVQMVIWMKRHGRTLKRELEGGARASIERDNWWGLLVLVMIAVAREGSETVVFLYGTVAAAAGQAGDAALLVLAGAA
GFLIALLTFWLLQLGGKLITWRRFFRVTEILLLLLAGALLVGGLDHLISLDVLPTLIDPVWDSSWLLDDSSGMGKVLADF
AGYRAYPALISVLLWLAYWLVVWLLLRRADGAAAISARSAA
>SEQF1086_CAE41452.1 putative regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MASVLGRATARFADVLRDHAPLLRKLQWGIVAAYAFLLIVPVFLPLPDNAASVFDNLTVLAQFAFWGVWWPFVLVSMPLL
GRAWCGWFCPEGMLTEWASERGQGRAIPRWMRWGGWPFVAFALTTIYGQLVSVYQYPLAALAVLGGSTVAAMIVGWRYGR
SKRVWCKYLCPVNGVFNLLAKLAPWHFKVDEEKWRHPVIRVEAINCAPLVPLRHMKGAGDCHVCGRCSGYRGAIALAPRS
PETEIVEVADGDGWQTALICFGLMGVAVGAFLWSASPWYVTIKQWAAAWLVEHDIIWPLLDNAPWFVLTHYPDVNDSFSW
LDGAGILLFVAGATLAVGLPAFAALWLADRVAPLAARAGRLAGVHKLAQGLIPCAGIGVFLGLSATTLTLLRHEGVGTGW
ANPVRFTLLALAVLWSLRLVWRLLARRPAGLARRGLAWLAAAAGLAPFCLSWVLFFAIW
>SEQF1086_CAE41453.1 conserved hypotheticals protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTSYAFRLLNVFAESCFGGNPLCVFEDARGLRDEEMQALALQFNLSETTFILPGGEGADAQVRVFTPDAEMRFAGHPALG
TARVVSELLGLGASVRLGFKAGVVPVREHDGAWTFTAPSSGMPRTARAALAAGEIAGLLGLDPADLHDEPLWVDTGSDQL
LVPLKTPEAVMRAAPHAAWPARWPANSLGRKTAYVFAFGPQTGAGARRIVQSRYFHARAGGGVAEDPGTGSACANLGGWL
LARGAPLPAHILVEQGDLVRRPCRLRLDVDDAGAIQVGGGVIEIGRGEIRLPR
>SEQF1086_CAE41454.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHT
>SEQF1086_CAE41455.1 putative dioxygenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFSHVTVGVSDLARAGRFYDALLQPLGLRQRQTQPDGGPPSLCWVRAGTSLPRFFAYMPFNGRPPSPGNGAMVAFLAETS
EQVDQAHAAGLAAGGSDEGAPGPRARYGPGYYGAYLRDPDGNKLHVVHRSGPAAAG
>SEQF1086_CAE41456.1 putative 2-pyrone-4,6-dicarboxylic acid hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVERARLAEGGGWDCHFHVFDASRYTLAAGSAYQPEDASLAAFRGVCRARGIGRAVLVHPSVYGADHSSYEDALAANGDW
LRGVAVVYPDEATTPDARIEHWDLLGTAGTRINRLFPGAPQHPERIVERVKPFGWHVQVLTDIVEDIGLVRRIAARDVPV
VVDHFGHHPHAQLLRSAGWQDLIALVREGAAWVKLSAPYRVGAQGPAWPGAQALVDQLVQANPRQLVWGSDWPHPPDHRH
PFPAPDQAAIGATIAQWLPDAQLRRQVMELNPLRLYGGTRAAGR
>SEQF1086_CAE41457.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMKLRAACALAAALACGAVLAQDLGGKPLTLVVPFAPGGNADIVARSYAVPMARLIGATVVVDNRGGGGGAIGTAIVAKA
PADGSTLLSATPGQLGTLPHMFKTGYKSADFVPVGVVSKTSIALVVKHDDARFKTTEEFIAYARRNPGKLNVGHAGPGSP
NHLAMLQFENATGTRFTPIAYKGSGPALIDLLSGQIDVIFDQVSSSLPHLKAGKLSALLILGPTRDPSIGQVRTLKEAGL
PEFDASTYIGVLAPKGVPAETVAKLTSVIRQVADDPAFDSKLREIGSGAFYADPADFARILQADEDLAKAMIQQGRLIDG
>SEQF1086_CAE41458.1 putative racemase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAIIKSIEVCVARVPMDKVTYLSNRTVVDRHYGLVKVRSADGVEGIGFCYVGNQAGEIFRVAVEQLLGPVLIGRDSLAVE
GLWREMYQEALLQGRMGMVMRALSALDIALWDLNARAANLPLHKYLGAVELDSVAAYASGGYYVEGKTAGQLGEEMASYV
ELGFKAVKMKTGRWSPQGEESRVRAAREAIGEDVELMLDCNNGWVDTVQAMEYLRRMEPYNPYFIEEPFSPDDVESHARL
ARLTRIPVATAEIGYGRWYHKQLLDMGAAAILQTDAAVCGGITEWKRIAAMAAGYGIQMCPHWFHDVHAPLAAATPNARY
VEFFWDDQVLNFRRLVDRQLEHKDGRVILHQTPGLGFGFDENAVARYGRWTTVS
>SEQF1086_CAE41459.1 probable LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRFLHSFVTVAESGSIADAARRLGLAPTTVAQQIRALEADLGSRLLTRAGRTVRPTVAGARIVDRARELLRGERDLRSAA
SDTGLPAGPMRLGATPTALMGLVPPLLRRWMRAHPDIQIYIEPGTSSVLLERVMAGQLDAAILVHPNFELHKTCAWSLIR
EERLVLLAPSALRVGNALRVAAREPFIQYDRKVVAGKMADEYLRAHGVRPKVQFELDGIEHISALVAEGFGVSVLPDWPT
LGPADARVRRWPLPDPCPSRQVGMVWLRSSVRSPLAQAFHAYLGAAAGAP
>SEQF1086_CAE41460.1 probable short-chain dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNQVATQSSLAGRTALVTGASRGIGRAIALALGRRGATVAVHYNAAREQADEVVQAIGAAGGRAWALRADLAHPDGAGAL
ARDLRASLREQTGDEGLDILVNNAGVSLRARLPEVSPQDFDRIIQVNLKTPFFLIQHLLPLLRDAGRIVNVSSMGTRAAY
PEMSVYAPAKAGLEALTLLLASDLGARGITVNAVLPGATATDMNTRARDPAMADALARDIALGRVGQPEDIADIVAFLAS
DQARWITGQRLDATGGQRL
>SEQF1086_CAE41461.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPPSRHLPPITALLSFRLNQLAQAGAGLPHPTRAIAVAAILINVFMATLESAIANTALPAIAADLGVSEASSIWVISAYH
LAMVAALLPIASLGEIIGHRRISMAGLVLFTLASLACGLAPSLPWLIAGRLAQGVGAAGILGVALAMTRFVYPREQLGRG
LGLNALVVSLSLAAGPTAASLILSLGSWHWLFLINVPLGLLGLALGVCALPPTPRSARRYDAVAGLLCALFLALLVYTLN
AYAHDVGAGGNTAYALATLAMLALLLRRQSGRGAPMLATDLLRRPIFALSAAATLGAFAAQTLAFVALPFMLQSLLGYTQ
VQTGFLITPWPALSDRHPPGLLGGIGMAVLAAGLLSLVALPAAPDAFDLGWRMALCGAGFGFFQAPNMRAMLADAPPERS
GGASGMTSSSIMLGQSLGAALVAGLFTLRGAAAAPAALWLGAAFAVIAGIASLLRLRHAAAAGAGARLDLTRV
>SEQF1086_CAE41462.1 sodium/solute symporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQESEFFQLSGTTAVLLLVAFYGATFLMSLMIGQKKENVDGYMVSNSSVGFGLSAASMIATWIWAASFYASATSGFKYGL
SGPIQYGFWGALMILFIYPFGKRFRQLAPKAHTLAEVIHARHGASSQMIMAVSNIVGSCISLMVNFTAAGALVSVLSPLS
FIQGVLIAGLGVLSYTLWSGFRASVMTDFAQLVAMILAAVIIIPLIFFNAGGPDMLQANMWRLSSEQADFFSTTAILEQG
APYFVAVLAYAIGNQTIAQRLFAVREDLIKPTFLTATIGYGAVVIGLDMLGLLALFVGLEPVNGNMNNIIPQMASTYLPP
VGIALFFILVVGSLSSTADSDLAALSAIVITDIYAKNLAGGRPDPRRMLWWGRATMIVATMVGVIFASLRLDILVMLVFV
GALWGAIVFPVIASFYWDRVSNSAFFWSVISAVVLFTIVRFELVPIEGAVAVFYEICAAIGGGVVIGLMSFAFFGRVTAL
TLGTLATLILLPCFVGTLREYIVLLGSLTAYGVSTVVCVALSLRNQERFDFSLLAERVTSFHYEKARMMGAKPAAPAAQP
QPARG
>SEQF1086_CAE41463.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLLTLYFLAWPVVSAAVLLVLIVTLWRDIRDARATGKSMI
>SEQF1086_CAE41464.1 putative muramoyltetrapeptide carboxypeptidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPALRAGARITIVAPASAIAGAADEAAEWLLERGYEPQVMPAARARLAPPFDYLAGDDAARLADLHAAFADPAVGAVWCL
QGGFGSWRVLDQIDYGLLRRHAKPFIGYSDVTALHLAIQRYAGFVTFHGPMLAQDLLAGRQAPTEQALLDMVSGRLGAGS
WIAAPPQARLATLASGVATGRLIGGNLALLAALTGTRYAIDARDGILFFEDVNEALPRVDRMLAQLRRAGAFDGVRGVLV
GSFTRLLGVPGDGEAAQAALYPLVREHFQARGIPVLAGWPSGHGDPNLTLPLGARVTLDAGRGALRLEQPVAV
>SEQF1086_CAE41465.1 putative adolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPPSAPTDSARSLYQDTAVAALRDDLALALCAAAHHGLGEGVCNHFSVALPGQAGAFLLNPRGLMWSEVRAEDIVLVDAA
GNKLAGRHEVEPTAMFIHAAIHQVAGKACVLHTHMPYATALTLTEARMLDTTLSQNAMRFHGRVAADRRYNGLALDAAEG
ERIARAMDGADIAFLGNHGVVVCGERIDYAFDDLYYLERACCAQVLAESSGRPLVPLDAALAASVAGQARSERLQSTLFF
EALRRALG
>SEQF1086_CAE41466.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRFKLRQMEAFRAVMLTGSMNGVARLLFVSQPAVSRLIAHAEQSLGLRLFERDKGKLTPTAEAQRLFEEVGQLFDEALRI
DELARDLAERPEGELKLCSSPSLALNFLPPVIARYVNEHPRVRLKYHTTLLSDMAHELLGRKVELAVSVLPIDNPNLVVE
PFATGHMVCILPQGHALARQDSVGLAELARNRLVLYSRNIPFGQLVAAAFQRANVPWRATVDIVRAELACALVRSGVGVA
IVDEFSVAGGGWPGIEVRPLREPIPLALSLVRSRFERPGRQAQRFVKLLKEQAQRRAAAVQ
>SEQF1086_CAE41467.1 putative oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMQTLGFVGLGMMGLPMLENLAGDERWQILAYDRSPAPFERLAGHPAWGKRLRAAAGLQELAACDTVITMLPNSAITNAV
VLGGDGQPGLIDLLESGAAIVDMGSSNPADTRRLSEQLAARGLTLIDAPVSGAVAKASTGTLAIMAGAAEADLRRVRPIL
ERMGAAIIHTGAVGSAHAMKALNNYVYAAGLLAVSEAMVIARRMELDLEVFTDVLNASSGRNVASETKLRQFIIPGTYNG
GFALALMAKDLGTAQSLQALTGVQADQLALCAELWRQALAQLPGGADNTEIHRFLAQRTPATEPA
>SEQF1086_CAE41468.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFKPLFATAALALAIGQATAAYPERPIRMVVPFPPGSITDVVARSLGQGMAAELGQPVVVENKPGANGIIGTQDVVKAQP
DGYTLVVVGVSTAASGVSLFKNLPYDPARDLTPIGAVAETPYLLVGGQDVAGKTVADLYDYGRQHPGKLTYAYGSGSAQV
FGAKLAAMGDITVTPVPYRGGPQALTDVIGGTVDLTFTDLANGLQQARAGKVKVYGVSTPGRFALTPDIPTLNESGAPGF
DLTVWFGLMGPAGLPPAVTERLAGALDKALAAPELTQTYARQGLSVKTQGPAAFGAFVRSEIDKWAGIVKETGIAPQ
>SEQF1086_CAE41469.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLIEIRKRTLIVETTYHENGPAPAQPLKLAASCAVIRNPYAGRYEPDLMPFMAELRSLGTLLATELVDTLGKDNIEVYS
KAAIVGVDGEMEHGAVWHEAGGWAMRSVLGEPKAMVPAVKAVATAGYRMMVPVHYIHASYVRSHFNSIEIGIQDAPRPRE
ILFALVMGTGARVHARLGGLTKEAVSVHDGQR
>SEQF1086_CAE41471.1 hypothetical protein BP1174 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGRRARRPGSGRRFFGHGGYDPRHGDLIRLPLHFYKFPAAELPGARPGPTLYRLASEHAMEIAALTWSTPLARLAPVPPR
TPAAPPSHDWPHAAPSVRPHGAAGPAAAPVDLLRDLHAQARMARAVAAYQAEQAARQTAARSPCAAQDLGDIDCLMVLQA
YRVAMPNAPVQDLQGMPPAAQRGSPAVGPIARTGPADQQIRR
>SEQF1086_CAE41472.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKSIVLTLATQAGLAQAQYVGPSSNQQMSVKELLDTARDDAVVTLRGKLVKQLSDDTYLLDDGTGRVQVEIDRHLFPPN
QPVDANTLVEVSGEFDKEVIGTSEVEAKALRILGAAK
>SEQF1086_CAE41473.1 putative succinylglutamate desuccinylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTPTPVFTDYLRAHQFLGMQPGPRLLVLGAVHGNEVCGTRAIERILAELESGALAITRGQLTLLPVTNPLAYRKGERQG
DRNLNRNLRVCATPTDYEDRIGNALCPLLQAHDVLLDLHSFHTGGQPFAMLGPRDNQEALEPFAHAREEARLVAHLGPRR
VVEGWMQAYERGVRRRREQNPGAPAALLDAAYGVGSTEYFRAHGGYGVTLECGQHDDPAAPEVAYRAIRQTLALLGLADI
ALEPPRRDFETLCLVDVVDREADGDAFARPWASFDPVRQGELVGTRADGRQVLAPRDGYVVFPNPRALAGNEWFYFAVAS
DRLGEDAGN
>SEQF1086_CAE41474.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41475.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPFNQTVWAARGSTALFVLLWSSGAIFAKWGLDYASPFAFLVLRFALALAVLTALGLRAGRCLPAPGTRLRTAATGALLL
GGYSICYLLALQHGVTPGVLATVLGVQPLLTLLWLERDLPARRLAGLTLALAGLVLVVWRNIDVARLNHAGMAYALAALG
CMTAGALLQKGSRQAPGEVLPLQYATSLALCLALAPGQPWQVQWSPGFVAAWLWLALVISVAATLLLYRLIQGGNLVNVT
SLFYLVPPGTALLDYLLLGNRPAPASLAGMAAIVAGLGLVFGRRRAH
>SEQF1086_CAE41476.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYTLKQLEAFYWSAVLGSFSASSRKLHTTQSAVAKRVGELEGFAGTPLFERRAKSLVLTQPGRKLFEGAREMLELNSRMV
LDMADPSRFEGSVRLGVTELVALTSLAGVIERLNQRYPKIQLVPEIEAGITMYQQLERDELDLAIMPGPFWSYEYDCVQL
GSVTNVWMASPALALDAARALTPHDLAPFPVISQPQNSALSHLYDAWFAQQGLSVKRVLTCNSLAMMAQLTMLGLGISHL
PSAYFDPLVARGALCRLRVQPDLPTIHYYAVYKKSLINPVVSTVIDIARETCNFEVEGAFLPLPPGGLRSG
>SEQF1086_CAE41477.1 amino acids ABC transporter, ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIKLEGVNKWYGEHHVLKDVSLEVGRGEVLVVCDPSGSGKSTLIRTINRLEPIGKGVIRIDGQDIHAKGVNINTLRRGIG
FVFQQFNLFPHMSVLDNVTYAPLHILKTPRREAEALAHQLLERVGMAHKAQAYPGALSGGQQQRVAIARALALKPPIMLF
DEPTSALDPEMVGEVLQVIKSLARDGMTMVCVTHEMGFAREVSDRVIFMDAGEILEIATPQRFFSAPEHPRAQRFLADII
GHHPA
>SEQF1086_CAE41478.1 amino acids ABC transporter, permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLDILHDYWPMLLVGQYPNGPLGGLALTLILALLGLLLSMPLALLIAIARVSPFRGLRVASRLLVNTVRGMPLLMLIFWA
YFAVPKLTGGSISGFWTLVTALVIYESAYLSEVIRSGIEAIPKGQIEASRSLGVGYWTTMRKVVLPQALFNVLPSMTSQF
VSTIKETSLGYVISVNELTFAANQVNNLVLTQPLQVFGILAIIYFLVCFSLSRSVAWLDSWVRRSRSMA
>SEQF1086_CAE41479.1 amino acids ABC transporter, permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFFLDAHYLSQLADGMMTTVQLFLVAWVLAFTLAVLLVVIRTTNLAPCRWFVDAYVEYHRNVPLLVQVLFWYFGMPELLP
EGVRGWLYQHNAELSLAAIALGLGSAAYIAEDIRSGLRAIPGTQFEAARALGSSYLQCMRHVIVPQALRISIPPLVGRAL
LLFKNTSVAMAIGVVELTYQAREIENETYRTFATFGAATLMYLLGSFLLMFIGSRVYARYNIGSGGRRA
>SEQF1086_CAE41480.1 probable solute-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLCGTLGTSQPFSYQDAATRTVVGYDVDMCKLVADKLGVKVNYKLLSVAARVPELNESRVDILAANLGYSPERAEQIAFS
HTYYVSPQKLLVRKDSNLQTIESVNGRRVAATKGSSSEREIKRILDKSQVLGFTDSSASYLALQQKKVDAQFASELVLVR
LMLQSPPTAPVSIIDKAVFDEPWGLGMRKSETRFIAKVNEILDQAEASGEAQRLFEKWFGAQTPYKLQRSFKIGPIAG
>SEQF1086_CAE41481.1 aspartate aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSIVADKIKRIKLSPSVATRAIVAQLREEGRRVIDLTVGEPDFSTPAHICEAAIAAMQRGETKYPPAQGTMPLRKAVRAR
LREETGVDYPEGRIIVGTGAKQVLYNGLAATLNEGDEVIIPAPYWVSYPDMVLVNGGVPVAVTATPATQYKLTPQALEAA
ITPRTKWLMMNAPSNPTGAIYTADEWRGLAEVLRRHPHVWLMTDDIYARLNFTATPTVHPLQVAPELAERTLVVNGVSKA
YAMTGWRIGYGAGPEALIKAIAILQSQSTSGACSISQAAAREALAGPQDCVAEFARTFKARRDAAVAALQGAPGLSVVMP
EGAFYVFPDCAGVLGKTTPDGRVLETDTDFVHYLLREAGVAVIDGTPYGVPGTFRLSFAAALEDIQQGCAAIRAACERLA
>SEQF1086_CAE41482.1 putative aldolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSIGFRILPLPEPPAADEVLAGFAQIGTAQISDCMGRLYGVQGLRPLHAGAARIVGRAITVKTRPGDNLMIHKAISLAG
PGDVIVVDGAGETANALVGELMMMDAQSRGVAAFVIDGAVRDLDVFQQGAFGCFARAVSHKGPYKDGPGEINVPVSIGGQ
VVAAGDVIVGDADGVVAIPLAQAGAVLAAARRKEDAELAAKEKLRAGTYAKPWVDRIIAEKTGDAQ
>SEQF1086_CAE41483.1 hypothetical protein BP1188 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQLTKNFVKAKNPCTAGYRWFLRDHNGHGEYQPVLDALVEAGRIDDAMWLIDQFGPTDQVLNLDTLDAPALVFAGTVTVR
RGITVDGVLRAGRNIVCGAGIRAGTLVQAGEGIDARGSIVCDGDVQAGGDIQTTWGVQVGKRLTVGGQLRAGWDIRTGGD
LNVAGPIRAGDAVVSGGILKCEQGIRAGQDVQAEYDINVVSGIQAGGSILAGGHVETGWGMIAGHDIVADGAIRSGEGLE
AGGRIEAGEGHGVYAGLRVRVDAWPDSARVAAARCFGPLLSGHWIGAAALDAQA
>SEQF1086_CAE41484.1 hypothetical protein BP1188A [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAYPRVMQRLPDQAVAGDPRPQPPEPPEPSDCCQSGCIPCVYDLYDEARERYQEALRAWRARHPEAAGGGDA
>SEQF1086_CAE41485.1 lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTLLPVLALAALLSACNANAPSDTPEGAPPPDTHTSRNSLDWQGTYQGVLPCADCPGIRTVLTLRADNTYQLQTQYLER
QPRPDTVQGRFGWLTGDNAIELDSAGDHYRYQVGENRLTMMSQDGTLPSGPLAEHYVLKRSQ
>SEQF1086_CAE41486.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPRMNPYTVAPRTMQALMALQSYVNDCGLEHSLLELVKMRASQINGCAFCLNLHYTEARRQGESELRLQLLNAWRESPL
YTARERAALAWTEALTLLAQTRAPDADYAELATHFDELERVNLTMAINTINAWNRIAVGFRSLHPVNE
>SEQF1086_CAE41487.1 putative RNA polymerase sigma factor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKTAAITIDTPGADDFEPHRRHLYGLAYRMLGSWSEAEDIVQETWLRWREIDPATLDNARAFLSRIATRLCLDVLKSAR
VRRQVYVGPWLPEPLPDAQAYAGAAPGEIAHDVSVALMLALERLSASERAAFLLHDVFDVPFAEIAGTLGRTEAGCRQLA
ARARNRVRESRPRFAVEESEGIRLARAFIDAAQHGDVDILRQLLADDAVLHSDGGGKKLAFMRPIQGRANIVRAFAGLAR
KGQSDLSSVRIVQLNGMPAIYGIERDGLPRTISLGVCGGRIVRVYIMRNPDKLAHLARFTG
>SEQF1086_CAE41488.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTTHRILAAGLLAALCAAASAAQAQAVQQQYQYPSAPSKDGSQSPPSTLRITETPGAAAVPIRDTPESVREYQRCRDVS
DRAAVSNEQMRAGVAQCLKELEARRQAG
>SEQF1086_CAE41489.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNPQLLALLVEREMPYGKYKGRLMADLPGHYLAWFARNGFPAGEIGRLLALMHELDHNGLRDLLKPLRGGRA
>SEQF1086_CAE41490.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAARMPANAMSADPSDSSHLVETLVSSETLCDGGFLKARRDTVRLPSGRNATREYIVHPGAVVVVPLLDDGRVLLERQF
RYPIGQVMTEFPAGKLDPGEDPLACARRELLEETGYTAGQWASAGALHLAIAYSTEIIHIFFARQLRAGTRQLDEDEFLD
VHSATVPELLQACREGRVTDAKTLTCVLWLQNVLAGDWPLDWQPA
>SEQF1086_CAE41491.1 ferredoxin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNPAGHEVEVRPQGWRFDARPGESLLRAAARAGIRLPSSCRNGTCRTCLCRLVAGEVAYLVEWPGVSADEKAQGWILPCV
AQALAPVAIEAPQATPLPPKPPPSTLLTGARRA
>SEQF1086_CAE41492.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTGTPRAPMVSGLFRIGALLAAGLLCGGAWAQDAEADPYGDPIVAPRAAPPQWKPLKIDPPGHRYAFPLYSSKNLERDDL
RGIRRLVIVLHGVKRNAASIHGTVTALFAANPERAEDTLVIAPKFASAIDAGFAAMPAWRRASWEDGELSMQARGRPAPV
SSLQVLDDLLHELSDSSRLPALRTIVLAGHSGGAQLVQRYAVLNSLDETLRREGLTLQYVVANPSSYLYLSPERPRADGK
GHAPYERGICPTYNQYKYGLDHLPAYARGLDPASLPARYAQRHVTYLLGSADNNPEHQLLDKSCGAEAQGATRLARGLGY
WRYEAGVLAPRLPRSVAWHHDAQEVVDAGHDAAQMFSSSCGARALLGDRSAPLPDGPACLPARR
>SEQF1086_CAE41493.1 transcriptional regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQRRVPLSPDAAHCSSCMLGHVCVPVGMPANEVEKLDELVKERVRVERGKTLYELDDPLDAVYGVRFGSLKTQLEDSSGQ
LQITGFHLPGEIVGLDGMIESKHVSSAVALEDSEVCVIRLPEIDRVSTQLPSLQQQFRRLMSREITRSHQMLATVGAMRS
EQRLAAFLLNLSQRYAALGYSSTEFVLRMSREEIGNYLGLTLETVSRLFSRFGREGLIRINQREVRLIDLPGLKQLIGQE
SC
>SEQF1086_CAE41494.1 ATP-dependent protease, ATPase subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRFDKLTTKFQQALADAQSLAARNDHPYIEPVHVLAALLGDPDSGAASLLARAGVAVNRVQPAIDSALKGLPQVQGDDNV
QVGRELQSVLVRTDKEAARRGDTYIASELFLLALADDKGDAGRILREAGLQKKALEAAIDAVRGGENVSGAEGESNREAL
SKYTLDLTERARQGKLDPVIGRDDEIRRTIQILQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNDEVPETLRGKRVLSLD
LAALLAGAKFRGEFEERLKAVLKELAQDDGQNIVFIDELHTMAGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRK
YIEKDAALERRFQKVLVGEPDVESTIAILRGLQERYELHHGVEITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAGARI
RMEIDSKPEVMDRLDRRIIQLKIEREAVKKETDDASMRRLAVIEEELEKLQREYNDYEEIWKAEKAAVQGTQAIKEEIDR
VRAEMAELQRKGQFDKLAELQYGKLPELEARLKAADSAEREAGESDSGKPRLLRTQVGAEEIAEVVSRATGIPVAKMMQG
ERDKLLRMEDFLHKRVVGQDEAVRLVSDAIRRSRAGLADPSRPYGSFLFLGPTGVGKTELTRALADFLFDSEEHMIRIDM
SEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVI
VMTSNLGSQHIQSMAGKPYEVIKEVVWDELKHTFRPEFLNRIDEVVVFHGLEAQHIESIARIQLKRLGERLEKQEMRLDV
SDAALAEIARSGFDPVFGARPLKRAIQQQIENPVAKLILEGVFGPRDVVPVDWQDGKFVFTRTLQ
>SEQF1086_CAE41496.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41497.1 tracheal colonization factor precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHIYGNMNRATPCRGAVRALALALLGAGMWTLSPPSAWALKLPSLLTDDELKLVLPTGMSLEDFKRSLQESAPSALATPP
SSSPPVAKPGPGSVAEAPSGSGHKDNPSPPVVGVGPGMAESSGGHNPGVGGGTHENGLPGIGKVGGSAPGPDTSTGSGPD
AGMASGAGSTSPGASGGAGKDAMPPSEGERPDSGMSDSGRGGESSAGGLNPDGAGKPPREEGEPGSKSPADGGQDGPPPP
RDGGDADPQPPRDDGNGEQQPPKGGGDEGQRPPPAAGNGGNGGNGNAQLPERGDDAGPKPPEGEGGDEGPQPPQGGGEQD
APEVPPVAPAPPAGNGVYDPGTHTLTTPASAAVSLASSSHGVWQAEMNALSKRMGELRLTPVAGGVWGRAFGRRQDVDNR
VSREFRQTISGFELGADTALPVADGRWHVGAVAGYTNGRIKFDRGGTGDDDSVHVGAYATYIEDGGFYMDGIVRVSRIRH
AFKVDDAKGRRVRGQYRGNGVGASLELGKRFTWPGAWYVEPQLEVAAFHAQGADYTASNGLRIKDDGTNSMLGRLGLHVG
RQFDLGDGRVVQPYMKLSWVQEFDGKGTVRTNDIRHKVRLDGGRTELAVGVASQLGKHGSLFGSYEYAKGSRQTMPWTFH
VGYRYAW
>SEQF1086_CAE41498.1 TetR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPLIAPASPQAALSGEPPHGPRARMRRTLLDTAQRLMVQGITPSVAELAEAAAVSRATAYRYFPSQSALIAAVVDQSLGP
ILQWQPQSDDAAERIDELLRFAYPRLQQHEASLRAAIMVSLQQYAEASAGQNPDTPRLVRGHRVDTLKHVTAPLASQLEP
AAHQRVIRALSLLYGTEVFLILKDIWHLELDDIVDVVTWAAQAIVRQAQQEAGIAPTSGKTPAKRKRNAPG
>SEQF1086_CAE41499.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQEIEQRIYLAATYDTKGEEAEYLRQLLRRDGVMVVTVDVATSGQGSPAMVSAQEVAACHPQGAQAVFTGERGSAIVAMA
LAFERYLAGQRDVGAVLGIGGSGGTALVTPAMRALPVGVPKLMVSTMASGNVAPYVGPSDIAMMYSVTDVAGLNRISRRV
LANAAGAIAGAFRQARQPIADDGRPAVGITMFGVTTPCVQHVTAALHDRYDCLVFHATGTGGQSMEKLADSRLLAGVLDL
TTTEVCDFLFGGVLACTDDRFGAIARSGVPYVGSCGALDMVNFGALDTVPAACRERLLYPHNPQVTLMRTTAQENARQGA
WIAERLNRCEGQVRFLIPEGGVSALDAPGQAFHDEAADAALFQALYDHVRQTDKRRLVRVPCHINDPLFARAAVEQFHEI
SQ
>SEQF1086_CAE41500.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPRFERSALLDKFQDMVRRRQPIVGGGAGTGLSAKCEEAGGIDLIVIYNSGRYRMAGRGSLAGLLAYGNANDIVLDMARE
VLPVVRHTPVLAGVNGTDPFCNFDAFLDELARVGFSGVQNFPTVGLIDGTFRANLEETGMGYGLEVEMIRLAHAKGLLTT
PYVFDPDQARAMTAAGADIVVAHMGLTTGGNIGAETALSLDDCVARIDAIAAAALAERGDVIVLCHGGPIATPQDAAHVL
QRCRHCHGFYGASSMERLPVEQALTATTRAFKQLSF
>SEQF1086_CAE41501.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSHLVYVSRVVAAPIERVWPHLRDFNGLSAWHPGVADSRLEEGGRDDAPGTVRFLSLNPSGYVRERLLMLDDAGRSLRYA
IIETDLPMRDYVAGVDLCPVTEGGGTFAQWWADFDVVAGANRDEVARLVGEGVFAAGLQALDQYLRDRQG
>SEQF1086_CAE41502.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRLPKHVTLKHLTAFVAVAQESSFTHAARRLFQTQSSVTTLVRQLETALGTQLFARTSRKVLLSAAGQDFLPRVMRLLA
DFDGVIEDVVRYGALERGRVSVAAAPSAITQLIAPAAADFARRHPAIRLYLRDDNSGRIQRQVAAQEVDFGLTSRWADAP
GLAFDPLLEDRFGVLYRADDTSIQPGRDGHVRWERLSHRKLVGVVDETGIMALLRARADLPIEAAAPFYEASSTTSQAAL
VKAGLGVALLPALAVERVREPGLAFALLARPTVMRTLCIIGHQERALSPAAAALIDTLRAYVRQATLPAGCRPAGRNSRA
>SEQF1086_CAE41503.1 N-acyl-D-glutamate deacylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQNAEKLDFKITGGWIIDGTGAPRRRADLGVRDGRIAAIGELGAHPARHAWDASGKIVAPGFIDVHGHDDLMFVEKPDLR
WKTSQGITTVVVGNCGVSAAPAPLPGNTAAALALLGETPLFADVPAYFAALDAQRPMINVAALVGHANLRLAAMRDPQAA
PTAAEQQAMQDMLQAALEAGAVGFSTGLAYQPGAAAQAAELEGLARVAAERRRLHTSHIRDEADGVEAAVEEVLAIGRGT
GCATVVSHHKCMMPQNWGRSRATLANIDRAREQGVEVALDIYPYPGSSTILIPERAETIDDIRITWSTPHPECSSEYLAD
IAARWGCDKTTAARRLAPAGAIYFAMDEDEVKRIFQHPCCMVGSDGLPNDARPHPRLWGSFTRVLGRYVREARLMTLEQA
VARMTALPARVFGFAERGVLQPGAWADVVVFDPDTVADRATWDEPTLASVGIAGVLVNGAEVFPQPPADGRPGQVLRAGA
>SEQF1086_CAE41504.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRKTLAVLALMAALPAAHADFPERPITLIVPFPAGGPTDIVGRVAAAKAGEILGQQIVVENRTGAAGTIGITATARAKPD
GYTLGLATVSTHGTAPHLFPNLAYDPIKDFTPVSNLVTSPNILSVNPSYPAADLTAFVAHVRANPGRDGYANAGAGGVND
LGMIWFLQLIGGKMTSIAYRGSAPALTDAVSGVVPVIFDNFPSSLPYIKSGHLRPLAITGAARNPRLPEVPTFAEQGYRD
YDVTAWYGVVAPAGLPDAVRDKLAQAFAQAVRDPATAAKMEETSAFPLGNTPAEFAAQIQAEQARWKTVIEKADIKLQ
>SEQF1086_CAE41505.1 probable oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPLPPHPRLLAAAGLVLAWLLLYLWAWRQARMRAASQARALRALEARPGPQTVLVAYASQTGFAAELAEHTAAALASGGL
QARVAELGQIDAATLGHYARALFIVSTYGEGDPPDAAAPFADTAMQSGAGLGALRYAVLALGDSSYAHFCGFGHRLDDWL
RANGAAPLFDLVEVDAGDAAALRHWQHHLGVVTGCTDLPDWQAPAYQAWRLARRTLLNPGSQGAPCYFIELTPPHSTAPQ
WQAGDIAEIGPRDAPDSPLHAHREYSIASLPADGAVHLLVRQMRTADGALGLGSGWLTHTAQTGQAIDLRVRANRNFHPP
ADARPLILVGNGTGLAGLRALIKARRSAGHGRNWLVFGERSAAHDWFCRDELEQWRGEGWLEYVDAVFSRDAPQRRYVQD
LLRDRAERVRDWIREGAAVYVCGSLHGMAEGVHQALADILGPAQLQALQHAGRYRRDVY
>SEQF1086_CAE41506.1 thiamine biosynthesis lipoprotein precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSMARPPSYAPPLAARLPSAPPRLSGEPVALAGASMGTTWSARLALPPGVTRQQAQAAIAAALDEVVAQMSTWEAGSDIS
RFNRAATGWQALPEALFHVLSHALDLADASGGAYDPTIGALVDAWGFGAGPRVHEPPAAAAIAAALADCGHGRVRLDAQA
RRAWQPGGVRLDLSSIAKGYGVDRAALALRALGVTACLVEVGGELRAHGVRPDGLPWRVAVEVPDASGAHALAVPLRDQS
IATSGDYRRYIEQAGRRYAHTLAPRTGKPLDNDLASVTVIHPECMLADGLATALGVLGAAAGADYAARHDLAALFILRGA
AGHEVRATPAFAALLDRP
>SEQF1086_CAE41507.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKAVAKLAAALTLALPLAAQAHDVWVLPSSTVLSGVDSWITVDAAVGNDKFYFNHAPLRLDGLDIIAPDGSAAQAENVSR
GKIRSTFDLQLKQNGTYRVAVVNDGVFARWKEDGKPKRYFGKPEGMAAAVPANAQELEVSQSLGRVETFVTAGKPGAIKP
VGKGLELVAVSHPNDLYSDEPATFQMLLDGKPAAGLEMEIVPNGSRYRDKVEEIELKTNADGKFQVKWPQPGMYWVHTEA
EDDKVSVPTATKRRMSYALTLEVLRP
>SEQF1086_CAE41508.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRKLLLSVLLAGLVARTAYAADLGLSVEIPRLDVAEYHRPYVAIWIEQADQSVAGDLAVWYDVAKKNNEGTEWLKDMRQW
WRRSGRNQQFPVDGVSGATRPAGKHALSFAGTAKPLADLKPGKYAVVVEAAREVGGRELVRVPFDWPPQQAQQLTARGEH
ELGAIAVDLKP
>SEQF1086_CAE41509.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDGKTSSKRRAYWLKTLHQWHWISSALCLLGMLLFAVTGLTLNNASHIESRARVDTRHLELPAPLRAELAAAAPARPALP
PALLEWLDRELDVDARGAAAKPEWSPDELYVSLPRPGGDAWLSIDLQSGELEYERTDRGWIAYLNDLHKGRHTGLAWSWF
LDIFAVACLVFSLTGLVLLKMHAGNRAATWPMVGLGVVIPVVLALLFIH
>SEQF1086_CAE41510.1 ABC, transporter, ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSNPVSASCAPVLQVHGLTKRYGERVIVDGLSFALRRGECYGLLGPNGAGKTTTLRALLGLTPFDDGAVEVLGHAVPAQ
ARQARARLGVVPQLDNLDPDFTVAENLLVFGRYFGLSDAQVRARLPQLLAFAALAAKADARIGELSGGMKRRLTLARALI
NDPDLIIMDEPTTGLDPQARHLIWERLKALLARGKTILLTTHFMDEAERLCHRLGVIDHGRLITEGAPRALIERCLEPQV
VEVYGDDLHAWLAAHRAALPARVEVSGETAFCHTDDATPVVQALQGWPDLRYLHRPANLEDLFLRLTGRGMREDA
>SEQF1086_CAE41511.1 ABC transporter, permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAGAWGWPPLTRRCVAVLRRNFLVWRKTALTTVLGDVLDPVVALLALGFGLGALLPGIEGVPYVTFLSAGSMCVGALYG
ATFEATYNAFSRLHVQRTWDAMLSTPLDLDDVVWAEILWAAAKALKSGIAILLVVVALDIARAPTLLWVPPVLALAGLAF
ASMALVVSALARGYEFFMYYFTLGVTPMVFLSGVFFPASQLPAALAGPLQWLPVAPAVNLIRPLTLGQVPHAWWADVAQL
AVTAALGIWLVAVLMRRRLLR
>SEQF1086_CAE41512.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVTDAVLNHAGREWGWVALRGVVAVLFGLMAVLMPGITLSALVLVWGAFALADGIFALVAGWRIRDQDKPLWPLILVGLT
GIAAGIATFAWPGLTALVLLYIIAFWAVIGGVFQIAAAIRFRKDIENEWLHGLSGALSIVFGALLLFQPGAGALALVWVI
GVYAVLFGVLLLALAFRLKNHVATPA
>SEQF1086_CAE41513.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLTYAPLNFIAIGIGATLGAWLRWVLGLRLNGAGWPWGTLTANLVGGYLIGVMVALIASHPEWPAWIRLAAVTGFLGGLT
TFSTFSAETVDMLERGVYATAAAYAGASLAGSLAMTGLGLATVRLLLR
>SEQF1086_CAE41514.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKVAVIGAGWAGLAASVALREADAKVTVFEAGRTPGGRARRVVHPEFGDDLDNGQHILLGAYGETLALMRRLGRNPDALL
MRRPLRLASLDGGFRLSAPPLPAPLHAAAALLLARGLPWRSRVAAVRLMHYLRQMQWQAPRDWTVTQLLDHTRQPAGIRQ
SVWAPLCLAALNTPPAQASALLYAHILRDSLTGHRRNSDLLLPYADLSALWPDVAARQATMRYGNTVRRLTPQTHSVEVN
GERFDAAVLAVSPQVAARLLEHALAEQGSGGLLRALQAFDYEPIATLNLRLAGPWPLPEPMMMLREEPARGFHGQWLFDR
SRLTGRGERGELAVVVSAARAVAAADREQAIAALTRQVAEQARRHPARLAPMPAVEIAELFVEKRATFAAMPGLARPLNS
TPWRSLALAGDWTDTGYPGVLEGAVRSGLQAARVVLGGAATPD
>SEQF1086_CAE41515.1 putative phytoene synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTPDEYCQEKAAKSGSSFYYSFLFLPPARRRAITALYAFCREVDDVVDECSDPSLARVKLAWWRTQVDQMVDGKPDHPVT
RALQPHLADCNITRERLLAVIDGMEMDLDQTRYLDWPGLRKYCWHVAGVVGELSAGVFGYQDARTLDYAGKLGLAFQLTN
IIRDVGDDARRGRIYLPVNELQQFEVKAADILNGVHSERFSALMRFQAERTRGLYREAMQALPETDRRAQRPGLMMAAIY
HALLDEIERDDWQVLHQRISLTPVRKLWLAWKTWVSGGAPLVRRLAR
>SEQF1086_CAE41516.1 putative phytoene synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAIDHYENFPVASLLLPRRLRGAVTDIYRFARAADDIADEGAAEDAERLRQLAAFRAELHRIGAEPGTLAVPASADLAPI
FTPLAATIARHQLPITPFFDLLSAFEQDISVKRYESHDDLLDYCRRSANPVGRLMLHLYGAVDEANLRDADAICTGLQLV
NFWQDVRIDWRKQRVYLPEEDLRRHGVSRDDLAACRLTPQWRELMAFEVQRTRALLHSGAALPRRLPGRIGLELRLVVQG
GLRILQRIEDAGYDVFMNRPELGAKDWAVMLWRAFT
>SEQF1086_CAE41517.1 alanine racemase, catabolic [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPRPIFASISQSALRHNLATVRRHLDDVAAKADGTPPSIWAVIKANAYGHGIEQAVAGFSAAQGLAMLDLQEAVRCREAG
WGGPILLLEGFFQPSDLEIVDRYHLATTVHTREQFDMLAHARLSRRVDIMVKLNSGMNRLGFAPDAYGSAYARAQQLHEY
GVVGGIGKMTHFACADGPQGVTQQMNVFNGATAHLAGATSVCNSAATLRYADLAVGHDGQTHWVRPGICLYGASPFADAQ
AGAFGLIPAMTLRSELIAIQDIPAGAAVGYGAIFRADRPMRIGVVACGYADGYPRHAGTGTPLTVGGVRTRLVGRVSMDM
LMVDLDPVPAAGIGTPVVLWGEDGPSVDEVAEAAGTIGYELLCALAPRVPVRHEG
>SEQF1086_CAE41518.1 probable short-chain dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKDKCVLVTGATKGIGWALTQRLTDLGCHVVGIARNTADVDFPGYLYACDLADAGRTEEVLREIRDKFPVDAVVNNVGIV
APQALGEIDLATLYSVLDLNVRVAVQVTQTFVESMKVRRSGRIVNICSRAILGAYDRTSYSAAKSALVGCTRTWALELAE
YGVTVNAVAPGPVETELFRRGHPAGSDAEKRAQASIPMKRFGTPAEVAAAVAFLLSDDAGFITGQVLGVDGGGSLGGH
>SEQF1086_CAE41519.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNPHLPPDDDDRDLRALYRELPRHEPDIMLDASIREQAQRAAEADRRARRPRATWHPAWAVAACVVAVSALFVFTDLEQY
ALQPAAEVELQAEQEAAQATRDAVPEPPAPDPALAAPPPLGALAPEAARGAAAESSAQDAAPARRGYMPQRAAPAVRAEK
QQQENLAASARQRDDPAYAQRVERIRALVREGKPQEAAAEVLAWRRAAPGLALPPDLEQLAPADGGTPGQ
>SEQF1086_CAE41520.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE41521.1 putative Ecf-type RNA polymerase sigma factor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDTASAADEALMLAYGAEGDMDAFDALYARHRAGLYRYILRSARNAAQADDIFQETWSRVIDARARYRPQARFTTWLLQI
AHNLLVDAHRRQPAPVAPEQAEAALASVPAAEHEQPEARLSEFQQRRRLQLAIERLPDEQRLAMLLRLEHDLDVEEIAQV
TGVSRETVKSRLRYATRRIREELSSESAPRSP
>SEQF1086_CAE41523.1 DNA repair protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAKSRTIYVCAECGGTSLKWQGKCPHCSAWNTLEETVESAAPSAGGHRYAPLAAASPVRSLSEIEARETPRQPTGLDEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSATTKVLYVTGEESAEQVALRARRLGLQTGNVDLLAEIRLEAIQAA
VSEQKPTVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHQQQVAGSCVLATQEGTRPLLVEVQALVDTSHAPN
PRRLTVGLEGNRLAMLLAVMHRHAGVSTYDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDKPLPAGLVAFGEIGLAGE
IRPAPRGQERLREAAKLGFSVALIPKANAPRQPIEGLEIWAVDRLDAALDKLR
>SEQF1086_CAE41524.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLLVIAACLASGALIGFMGGALGIGGGLIAIPALGLLLGMPQQLAQGTALIMVLPTIMMAVRKYHQHARIDMRVAGAGA
AGAVVFTWVGAQLALGIASRTLRLSFAVFLFFIALFYVYQTVRKRAAAAPAAPARPAPVLSPPRASVLGVLCGTLGGFFG
VGGAVLAVPIITSVFRLPQTMAQALALTMVIPGSMIALVTYTWAGQADWWIGVPLAAGSLVFVPVGVRLAYRLPERKLRA
CFAAMLFATVALLIFEA
>SEQF1086_CAE41525.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTQSRIAAFLSTSALCLGLAAAPSAYAAQSDAQSGAKSSVKAPSGGKHAKSEKHAKSGAHHGAHHAKTGSTSTK
>SEQF1086_CAE41526.1 multidrug resistance protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTPAAAPSPGFGATMRDIARQAWPVLISQWAGISFGVLDTAMTGHASPQDLAAMSLSVSVYITVFVGLMGVVHALIPILA
QHFGAGQQREVGSTWGQGVWLALGLSVVGAILMLFPDAWLSLSGDVDPAVRDRVAAYLRALVLALPATLVFRTIYALGTA
VSRPKVVMSINLAAVFVKAFCNWVLIYGKFGLPALGAVGAGLATAISGWLSLAAGLWIITHDRYYRRFRLRVGRPDWRAL
KELLRLGLPMGGSYLVEVSAFTFMALLVAREGTYVSGGHQIMSNLAALCYMMPMALGVATAALTAQAIGAGRPDLAHRTG
MAGLALGLLGAALTAAVLLVGRPLIIAAYTDDLEVAAVAASLLAIIPLFHLCDSMQCINSYLLRAHKVAVMPLVLQTVAL
GGVGLLGGWWLGFGPGRGGLDPLRTALMPGSPAGAGTMWLMAMAGLGLSAVLLHYWYRRIARLALARG
>SEQF1086_CAE41527.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSPISRSTPARLTVQATAKLPRLVLLGLSLIYIVAGLFMRDPWKTDDVVGLATMVTALREGGMTWLLPQVGHLAHAEEGP
MITWVGGASMWLFGPWLGDITAGRLPNLLWFGIATVSVWYGTYLLGRRAEAQPLKLPFGGEPAARDYGRMLADAALLLLL
ATVGILQRLHETSVVPAIMAWQALAFYAMARTLDRPFLGATTLGVAVAGAFLTRGWIGAAPVMVAAVLAFYPRSLLWQRV
RWLPWAALIAAALMLAWWLPATLAEGSDYWIRNWKTWTLASYDWPDLRITGRTLRDLPWYLWPTWPLALLAIWRWRAWLY
APHIWVPLVLAATAALMLLFLDGPNDAEYAMLAVPCAILGAFSLPTLRRGVVNTLDWFAVMCFSLTAATAWLGWVALHFG
WPAQISRNIARQTTGYEASISWLASALALVISAAWVVLVVWRLRSRPLALWRGTVLSAGGLTATWILLVLLWQPAVDYAR
SYRTVSGQLAEALQANLQPGECMRGLSLGSGQRASFLVFDNMSFTYDSKCTLVLQQTTHSSLRDGTAAYSDGATELWRGG
RRADRHEVFRLLRVTPTR
>SEQF1086_CAE41528.1 50S ribosomal protein L31 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKEGIHPEYREVVFMDVQTGNKFVTRSTIHTRETVEIDGKTYPLFKCDVTSESHPFYTGAQTRIVETGRVEKFRARFART
AGTVKSAS
>SEQF1086_CAE41529.1 putative tryptophan oxygenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQPTPTQRPEAIVHDEKAQLDFARDMSYGDYLHLDELLGAQHPLSPEHNEMLFIVQHQTSELWMKLMLHELRAAIAAIQQ
DRLQPAFKMLARVSKILEQLVSAWDVLATMTPPEYSALRPYLAHSSGFQSYQYRQIEYLLGNKNAAMLQPHAHRADLLAQ
VRAAFEAPSLYDEALRFLARSGLAVPAGALQRDWTQPYRADDQVEQAWLTVYRQSERYWNQYQLGEKLTDLEDAFRLWRF
RHVTTVERIIGFKRGTGGTSGVTYLRKMLEVVLFPEIWKLRTDL
>SEQF1086_CAE41530.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRLWDISPPVSADSPVFPGDTPYRQQWKWSLTPDCPVNVSEITLSPHIGAHADAPLHYENGAAAIGAVALEPFLGPCRV
IHAIGCGPLILPEHLAHAQAGLPPRVLVRTARHAALQWWVDDFSAYAPQTIEWLAGRGVTLIGIDTPSIDPASSKTLDSH
HAIRRHDMRVLENLRLDDVDEGDYELIALPLALVQADASPVRAVLRELA
>SEQF1086_CAE41531.1 DNA repair protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLPEPLLRADWPRERLLRHGAATLSDPELLALALRTGVAGCNAVQLGHDLLRRFGGLRGLLGTSPAELQVVPGLGTAKA
CVLAAVLELARRTLEEDLVRQDALANPDLVRRYCQAALGHRKVEHCIALYLDARLKLIICAEVARGTLTQAQIYPREIVR
EALRHHAAALILTHNHPGGTAAASAADIAMTRQIRQALALIDVRLIDHVIVAGAATVSMAAQGHL
>SEQF1086_CAE41532.1 FkbP-type peptidyl-prolyl cis-trans isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNVLVRPDSYLTLHYRIVLASGPAEGSVFTDTFDGRPATLQMGSGQWAPGLEAALLDHAEGERFSVALAPAQAYGERNPD
LIQKVTRAMLAEHAGADATFEPGDLVEFAAPNGGRYSGVLKEINADWAMFDFNHPLAGTALRVDVAILGVL
>SEQF1086_CAE41533.1 putative drug tolerance protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAEVTAADAEVLLAQPRGFCAGVDRAIDIVERALELHGAPIYVRHEIVHNRYVVEDLRGKGAVFIDELDQAPAGAIVVF
SAHGVSQAVRGEAEARGLRVFDATCPLVTKVHIEVARMRAAGREIVMIGHKGHPEVEGTLGQAQGGMYLVETVEDVAALQ
VSDPGNLAYVTQTTLSVDDAAAVAGALKARFPGIVEPKKSDICYATQNRQDAVKLLAPECDLVLVVGSTNSSNSNRLREV
AERKGVAAYLIDGAHAIDPAWLQGRRSIGITAGASAPEVLVQQVVERVRELGAVSVRTMPGLEESVAFPLPKGLSRKIAQ
TESLE
>SEQF1086_CAE41534.1 putative glutathione-S-transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MELYSYFRSSAAYRVRIALNLKGLQYDYRAVHLLKDGGQQLAPQYCALNPNALVPALVDGDAVLTQSLAIVEYLEETHPQ
PPLLPSDALGRARVRAIAQTIACDIHPLNNLRVLKYLKHELKVSEEAKNAWYKHWVELGLAGVEAMLAGAPHTGRFCHGD
APTLADLCLVPQLANARRFGCDLSAMPTLARIEAACAELPAFQQAAPAAQPDAE
>SEQF1086_CAE41535.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAMHHARSGELIDLRPLGESLRETVSQALVRADHLEVMRLVLPRDQQLPSHAIDASAITIQCLEGAVMLTAQDTTQRMPA
GTLVYLAPGVAHAVKALEDSTLLVTLMLARP
>SEQF1086_CAE41536.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDAFKQDSRIGVTVLTGFLGSGKTTLLNRLVQEPEYAEAVVIVNEFGDIGVDHHLVRNVDDRIVLLEGGCICCTASGGLV
DTLRDLFMLVVRRRIKPFKRVLLETTGLAGPASVMFSLRHDPFLAERYAYHGAIAMVDAQHVREQLMVQPEAAQQIALAD
LVVFSKADLAGQVQLASAMRDVARANPGVPMCVVRRGEPLDERLHGDFLVRERRQAAPLGRWLGAFAAPPGGPHPNVAHF
SLNLSVPLTRGMFLARMSEIQAAYDRGILRIKGLVCFEAEALPWAVHGVHRQLYPLEALPQWPGDDRQSRLVFILRGLDR
DAVQADVARRLQQG
>SEQF1086_CAE41537.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAPLSLAAQEQIFQAARTFNRYTEQSISDATLHELYELMKWGPTAMNSQPGRFIFLRSAEARQRLAPALSPGNLEKTLA
APVTVIVAQDTQFYEHLPTQFSAYDARPVFENNADAARATAMRNSSLQGAYLIVAARMLGLDAGPMSGFDAAKVDAEFFP
DGRCRANFLVNLGYGDPAGNYPRGPPPGLRHRGANPLIARP
>SEQF1086_CAE41538.1 probable LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDRLKAMQVFVEVADRGSLSAAAMHLGMSRAMVSRYLAELEAWVGVRLLHRTTRRLSLTPAGSETLPRCRRMLEMVGDMR
EAVAAPDAEPRGLLRVTAAMSFGGAQLAEAVAEFVRRHPAASIDLLLVDRAVNLVEERVDLAVRITNDLDPNLIGRRLAD
CRSVVCVAPQYLQQHGAPARAEDLSLHNCLTHSYFGRSLWRFERAGEPVEVPVGGNITANETDVLMRAALAGAGIVMLPT
YLAAGQIAAGSLRLLLPDCAPPVLGIHGVYVSRKQMPLILRTMLDFLAERFSPAPWDAALKGR
>SEQF1086_CAE41539.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNDSEAIFVLETALLCASQPMQFAEMRKLFGDDQDIDNNALRAWLEALQAQWNERGLELVQLASGWRFQSRPQMQRYLER
LNPEKPPKYSRAVLETLAIVAWRQPVTRGDIEDIRGVTVSSQIVKVLEDRGWIEVIGHRDAPGRPALFATTRQFLDDLGL
RALDELPPLESAQAAAALAGLDLGGAEVLVEAVDAAEGDAARDEASGDEAAGQVAASLGDAQPEVAQAGVDGVESAVSPE
PVLPVSVDDDANEPAETAAASLPGAGVAEPAHESAGAAPDDGNGPVEVPPLQPDQISLPDEPAEARPHVPAPEVGPGEPQ
PEIVPAAPEPVTPPAPGRDEADGVVSNPEDDEPAASGRLPKV
>SEQF1086_CAE41540.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTNTTMQDDNSFPDNESPVAQPPVDESAASGEAGDGEGGARARGRKLRTPFRRRRGDAAAAGEAGADEAGSQPAAQSEG
DARASERDADQALAYLDNAARIEQRLGKYLNSEAVMPKLHKVLADAGIGSRREMEELIVAGRVSVNGEPAHIGQRVAPND
QVRVNGKPIARPNAKKPPRVILYHKPAGEIVSHDDPGGRASVFARLPKLRTGKWLSVGRLDLNTEGLLIFTTSGDMANRI
MHPRYGTEREYAVRVLGEMDDAQRKSLTEGIELEDGKAAFGSFEYLGGDGSNRWYRVTLQEGRNREVRRMFEAVGVTVSR
LIRTRFGDIVLPRNLRRGRWEELDGSLVTALMVQLGLLRDGDESEGRRKSRQPQSHDSALPPGFGTLERNGMNGARIGRR
GKLQGGRPGSAAACPSDPFGTGLMITGGYANGHPLGNDSAAGRGGKGKPAKGKAGGDKPQRGQGRKAAGAQAGGQGAAAK
PAGARGGKKAGGRAAAPGAKGAGGRAGGNKAASAGGKAAGVAKPASPTGNRGPAAPKPQRARRGGGGAGGGGGGGGGGGG
RGDDWQPKGAGAHESRLGFMGGRGGRGR
>SEQF1086_CAE41541.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADLFALTEEALAGMDIELVDVERAAMGLLRVTIDRVDGVRIEDCEQVSRQLSRVYEVENIDYKRLEVGSPGVDRPLRNE
AEFRRFAGERIEIKLREALDGRKVFSGTLRAPEADGASGQDDTAGAGKAVFGLEFEAKKNDIQVLSFTLDDIERAKLDPV
LDFKGKKR
>SEQF1086_CAE41542.1 N utilization substance protein A [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSREILLLVDALAREKNVTREVVFGALESALASAMKKRFKDDADIRVSIDRETGGHEGFRRWLVVPDEAGLQEPDKQELL
SEAREMAPDIEVGEYIEEALEPVEFGRIGAQAAKQAILQKIRDAEREQVLNDFLDRGETIISGSIKRMDKGDVIIETGKI
EARLPRSEMIPKENLRVGDRVRAFVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGLLEIKAAARDPGVRAKIAV
VAYDKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDEDKHAMDVVVDEENLPKAI
GAKGQNVRLASELTGWQINIMTPEESLNRQETERAALRATFMSKLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAF
DEDTINELRARARNALLTEAIAQEERLETAQDLLELEGITPELAAKLAERQVHTRDDLAELSTDELAEIAGLQEEEASDL
IMRARAHWFDEE
>SEQF1086_CAE41543.1 translation initiation factor IF-2 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSNTVAQFATELKMPANVLLEQLRAAGVDLKSVDDAVTDSDKAKLLESLRRAHGATEGKKITLTRRQTSEIRQADATGR
SRTIQVEVRKKRVFVKRDPAELAAEQAAARAEEAAAEAVPAEAAPAPAEPVRAEPAVETAAKPVEPPVAEAPAEPVAAPA
AEPQPEQPAQAEAQPEPTPAAQAEPEPQPEPQPEAAPAQAVAEPVEPAKNVSVTETEAEQARPEPVVHAQTELTSQTPTP
VAQPSAPAESPKSVKAEPAAAPKTTAKPGEIRRAAAPAAPDRAREEARRAAEAEAAALREMLSRPRKVLRAPEPEPQAGA
LSGTLHKPAGKPATTAAPKKDAKPGAPGAKKTIKTAEVSSTWSDDSARKKPADNKPAVATRDGWRAGGKGGRGGRNSRNQ
HQDRRHEQVQQEFIAREIHVPETISVADLAHKMSVKAAEVIKQLMKLGQMVTINQVLDQETAMIVVQEFGHTAIAAKLDD
PEAFLDETAAVTEAEAEPRAPVVTVMGHVDHGKTSLLDYIRRAKVASGEAGGITQHIGAYHVETGRGVVTFLDTPGHEAF
TAMRARGAKATDIVILVVAADDGVMPQTREAIHHAKAGGVPLVVAVNKIDKPEANPERVKQELVAEEVVPEEYGGDVPFV
PVSAKTGAGIDDLLENVLLQAEILELKAPIEAPAKGLVIEARLDKGRGPVATILVQSGTLKRGDVVLAGASFGRVRAMLD
ENGKQIQTAGPSIPVEIQGLTEVPAAGDELMVLSDERKAREIALFRQGKFRDVKLARQQAANLESMFDNLGEGTQTLALI
VKTDVQGSQEALVSSLTKLSTDEVRVQVVHAAVGGISESDVNLAIASNAVVIGFNVRAEQSAKKLAETNGIDLRYYNIIY
DAVDEVKAAMSGMLAPEKREEVIGLVEVREVYTISRIGTVAGCMVLDGVVRRDSQVRLLRNNVVQWTGHLDSLRRFKDDV
KEVKSGFDCGLTLRGNNDLQLGDQLEVFEIKEIARTL
>SEQF1086_CAE41544.1 ribosome-binding factor A [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRHKSKSIPGRNLRLADQIQKDLAGIIQREIDMTRAGLITLSGVELSADYAHAKVYFTVLGAEPDTAAALLNEKAGWLH
SQLYKLLHIHTVPTLRFVHDPQITRGIEMSVLIDRANRPGPHSGVPDEPEDQS
>SEQF1086_CAE41545.1 tRNA pseudouridine synthase B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAKRRGLALDGVLLLDKPVGLSSNHALQRAKRTVDAAKAGHTGTLDPFATGLLVCCMGRATKISGRMLEADKTYQATLQF
GEETDSGDLTGHIVARAPDGFAGVEEAALRDVLSRFVGTIEQIPPMYSALKRDGKPLYEYARAGIELDRPPRQVTIRHIE
LLSFSGMQAQIDVACSKGTYIRTLAQDIGRALGCHAHLAALRRTHVGPFSLDRAVTLEALQAMPDAKQALLAMNELPAGL
LPAT
>SEQF1086_CAE41546.1 GTP-binding elongation factor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRALRNVAIIAHVDHGKTTLVDQLLRQSGTFRENQSVAERVMDSNDIEKERGITILAKNCAVEYEGTHINIVDTPGHAD
FGGEVERVLSMVDGVLLLVDAVEGPMPQTIFVTRKALALGLKPIVVVNKIDRPGARPDFVINATFELFDKLGATEEQLDF
PVVYASGLSGYAGLTDDVRSGDMRPLFEAIMKYVPQRDDDANGPLQMQIISLDYNSYVGKIGVGRINRGRMRGNMDVAFR
FGPDGEVQRGRINQVMKFSGLERVVVDEAEAGDIVLVNGIEDLHIGSTITDPSTPEGLPVLRIDEPTLTMNFMVNTSPLA
GREGKFVTSRQIRDRLERELKSNVALRVRDTGDDTVFEVSGRGELHLTILLENMRREGYELAVSRPRVVFKEIDGVKCEP
FEALTVDVEDAHQGGVMEELGRRKGDLQDMQPDGRGRTRLEYIIPARGLIGFQNEFLTLTRGTGLMSHIFHEYAPLREGS
IGERRNGVLISQDNGDAVAYALWKLQDRGRMFVSPGEPLYEGMIIGIHSRDNDLVVNPIKGKQLTNVRASGTDEAVRLVP
PIQMSLEYAVEFIDDDELVEITPKSIRLRKRYLQEHERRRASRENA
>SEQF1086_CAE41547.1 putative toxin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRISPRAGWLAASLLCLLLPGARAWAASELILVRGYGNCPSGYAPLTYDQAHRPSLRARMRELSGNEPWPIHGLADGQY
LGGKYGGELKRARLADIRGLRDHFCLASGSDGAIGRGVHAWGHVPGWGAWQWRRTLPPATGLGHYSNVRVARLDDLPFGD
LCAVFTRDGNPVVQACISPQAGRLHRESYATLRRALETLRRQGLPLRVYVDHDRRPDFAAVPDVPAYSITGLATCNRGGC
M
>SEQF1086_CAE41548.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPPFKFTVPALAALLAAWPLAHAGAVHDYPSAVIEAYHIGQLHTGSTPFVCARFHPEGQASPQALRIACAVQRYGKARRH
FDEHVARIITCHAANRPTSLRVESDVWTDPQIYRLFSRAEILSIAPCGAGGLLP
>SEQF1086_CAE41549.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSEIKTAAEKLADIGPAVSMFGSARISRESPYYETCAAISAALAGAGFAIIAGGGPGIMEAANKGAFEAGGTSVGLNISL
PHEAHNNEYQTISLSFEYFYSRKATFFMHSMAYVAMPGGFGTLDELFEALTLIQTGKVPPAPIVLVGSEFWHGLVDWLGE
QLLANGMIAAHDLNLFIIEDDPAKVVRKVVEFHDKQGRTDSQYAPSLPA
>SEQF1086_CAE41550.1 DNA polymerase I [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVQDHKAEYAVCVFDARGKTFRDDLFPDYKSHRPPM
PEDLAAQIEPIHEAVRALGWPLLAIEGVEADDIIGTLARQASAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSGEVLDVAG
VNSKFGVPPERIVDYLMLVGDTVDNVPGVNKVGPKTAVKWLAEHGSIDALVAAADSVKGVAGNNLREAIPNFPLTRTLLT
VKCDCDLTGHVSDWEDLAWRERDAATLTALFDRYGFRTWLRELTGDQERLPTGDARAVPQAVAPAELDYRIITDWAAFDA
WMALVEDAPLVALDTETTSLDEMQARLVGLSMAVKPGVACYIPVAHRGPEAGDQLPRDEVIARLRGWLEDAGRAKLLHHA
KYDTHVFANEGVSLAGVAEDTMLQAYVLESHRGVGLNDLAQRFLGRSGVNYEDLCGKGAKQIGFDEVAVPLAGHYSCEDS
DFTLQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSHKLGQEMLALEQRAYELAGQPFNLNSP
KQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQVLLEYRGLSKLKSTYTDKLPRMISPATGRVHTHYSQAA
VITGRLASSDPNLQNIPVRTEAGRRVREAFIAEQGKLLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGV
PLAEVGAEQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVFGRRLQ
LPDIRAASGPRRQGAERAAINAPMQGTAADLIKMAMVAVQDWLDAERLRTRMIMQVHDELVLEVPDEELAAVAEALPRLM
CDVATLRVPLVAEVGMGTNWEQAH
>SEQF1086_CAE41551.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLLLWILLATIAGGLIAVSIASWLAYRVFAKYLHHMVSLSVGVLLSVALLHLLPEAFETAHADARALFALMLAGLIGFFV
LEKIALLRHSHHHEGDGHHHHKGHNRREAGRGGVLILVGSSLHNLADGVLVAAAFLTDPMLGVLTAASIIVHEVPHKLGD
FVVLLNAGLARGRAFSLILFTSLCTAAGGVVGYFVLQEAQAAVPYVLVVAASSFLYISVADLMPQMHERVSLADAVPQLL
LVGAGVLLIYGVTSFMHHEHDPAHEHGQHAIEAADHRH
>SEQF1086_CAE41552.1 putative carboxymethylenebutenolidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSFAAAAGSTAPTTIHTDTQGLSHGDFELAVPGGPVAAYYAAPAGREQLPIVLVVQEIFGLHEHIKDVCRRLAHDGYLAV
SVNLYQRQGDASRYDNIPGLVAELVSKVPDEQVHADLDASLAWAAAHGGDGARVGVTGFCWGGRTTWMYAARNPAVKAGV
AWYGRLSSGHGPLIKQVPLDVAGSLHAPVLGLYGGKDESIPLDDVRAMEARLQQGGAPAQASRIVVYPQAGHAFLADYRP
SYRAADAQDGWRRMLDWFALYL
>SEQF1086_CAE41553.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGLLPLLDFAGYVALLLWGVHMVQTGVQRAFGAALSIALGRALGTRLRAFASGLGITAALQSSTATGLMITGFAAGGVV
ALVPALAAMLGANVGTTLIVQLLSFDLTSLAPILILAGVWMFRRAAPGRTRDLGRVFIGLGLLLLSLHQLVQLFQPFETA
PLLGVLLDALASQPVAAVLLAAALTWAAHSSVAVVVLVMSLASHGMVNPALAFALVLGANLGTAINPMIEGVTGDDPAAR
RLPLGNLLTRVAGVLAGIILLPWLQPWLSGLAGDPAHAVANFHTLFNVVIALVFLPILTPYAALLTRWLPKRADPNDPAR
PQYLDEWAHDVPAVALGNAAREALRMADMLQTLLLYARAGFKRDNRHRMVQARQLDSALDKLETAITTYLATLDQENMTR
EDHQRLDTILAFCSNIGHAGDIAYHGLLNHIGRLRKQGLLLSADQRASLDATLGELIANQRQAAALFVTDDLRQARALAG
EKARFRALEAEAAETQLQQIKSGKVDAAEVGALYLDILRDLKGINSHVVGASAYPLLARHGELLPSRLRDAGN
>SEQF1086_CAE41554.1 L-serine dehydratase 1 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAVSVFDLFKIGIGPSSSHTVGPMRAALLFVQGLERDGLLARVASVRAELYGSLGATGKGHGTDKGVLLGFMGQAPDTVD
PAAIAGMLQAVRANRRVLLLGRHDVPFVEKEHMLFYRREALAEHPNGMKFHAFDADGQPLRESRYLSVGGGFVVTAGAAN
AQVIGAHDQLPYPFRTGRELLDMCRASGHSVAGLMMRNELTWRGAAEIEQGLDRIWEVMQECVARGCGIGHPEADGDLPG
PLKVRRRAPELYRALTQRAERTLSDPLSVMDWVNLYAMAVNEENAAGGRVVTAPTNGAAGIIPAVLHYYDRFVPAANRAG
VHDFLLTAAAIGLLYKYNASLSGAEVGCQGEVGVACSMAAGALAAVQGGSVEQVENAAEIGMEHNLGLTCDPVGGLVQIP
CIERNAMASVKAVNAARMALRGDGHHYVSLDSVIKTMRETGADMKTKYKETARGGLAVNIVEC
>SEQF1086_CAE41555.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQLVRPTLELPAGRRKVLLHSCCAPCSGEVMEAMTASGIDYAIYFYNPNIHPVKEYEIRKNENIRFAEEHGIEFIDADY
DMDNWFERVKGMENEPERGIRCTACFDMRFERTALYAHEHGFDTITSSLGISRWKDMNQINGCGERAAARYDDLVYWTYN
WRKGGGSQRMIEISKRENFYQQEYCGCVYSLRDTNRHRRAQGRERIHLGVKFYGVEEKL
>SEQF1086_CAE41556.1 glutamate-ammonia-ligase adenylyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQYRPLIHESRLSVCLSPAMSSAPPFAAALAWSGHLRRRLDAHPDLAAWLANACAHPVSANVLAAWQAELSGPDAPEVLP
VEQCRGMLRKLRERVFLTLIVRDLGGQADLEEVVGAMTVLADIAVGTAYRSVAAELAAVHGLPREQSTGDPQEMLIVGMG
KLGGRELNVSSDIDLVMLYGDEGETDGPRRISNHEFYGRLTRRMMPVLSEVDADGQVFRTDLRLRPDGDAGPLAWSLDAL
EHYLIGQGREWERYAWLKARLMPAQAFADSNPDAQARQLESLRVPFVYRKYFDFDALAALRALRERIRQDWQRRALARNG
VDSANNIKLGDGGIREIEFIVQLSQLIRGGRMPALQRRGLLEALHAERAAGLVPEGDAQKLEAAYRFLRRTEHALQYRED
EQTHLLPADPAQRAALAAALGYEPAAFERTLAEHRAFVSQTFRNAFRLAGMGEEDDSPAPARTHANGHAMRPHAGALHDI
EERLAGQIQRDFPEHAEDLLRRTETLLGSHRVRSLPDSSRHRLEALLPAALTAATQTSAPMDAALRLFDLIETIAQRSAY
LALLAEYPDTLARVARMVAASPWAAQYLTQHPLLLDSLIDWRTLFEPLDFAQVAHQLAADLDACRLPDGEPDIERQMNLM
RDVQRQASFQLLAQDLEGELTVEKLADQLSALADLLLAETIRRVWPLVNRRPGAEPHLAVIAYGKLGGKELGYASDLDLV
FLFDDDREDAAELYAKLGRRMTSWLSTMTSSGRLYEVDLRLRPDGNAGLLAVSLEAFEQYQRSHAWPWEHQALTRARYAA
GDTEAGARFERIRADILVMPRDVQALRGEVLGMRDKISAGHPNRSELFDVKHDRGGMVGVEFVTQYLVLCHAATHRVLVN
NLGNIALLRLAGEAGLIPAPLALAAGDAYRTLRRAQHQLRLKGVDKARVPPGQLAAERATVCELWQTVLQDGTIAQAEVK
>SEQF1086_CAE41558.1 transcription termination factor Rho [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHLNELKALHVSQLLEMAAGLEIENANRLRKQELMFAIMKRRAKQGEQIFGDGVLEVLPDGFGFLRSPDTSYLASTDDIY
ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGSPPEAIKHRIMFENLTPLHPNQVMRLERDIKSEENLTGR
ILDIFAPIGKGQRGLIVAPPKSGKTVMMQHVAHAITTNYPDAVLIVLLVDERPEEVTEMQRTVRGEVVASTFDEPATRHV
QVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRFFGAARNLEEGGSLTILGTAL
IETGSRMDEVIYEEFKGTGNSEVHLERRLAEKRVYPSINLNKSGTRREELLIKPELLQKVWVLRKFIHDMDEIQSMEFIL
DKMRATKTNAEFFDMMKK
>SEQF1086_CAE41559.1 thioredoxin 1 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTVVCFNPSYTSNKNSGRMLHARVAQRNPRITIMSEQIKNVSDASFEADVLKSGQPVLVDYWAAWCGPCKMIAPILEEVA
AEYAGRLTVAKLNVDENQDTAAKYGVRGIPTLMLFKDGQAAATKVGALSKSQLTAFLDGAL
>SEQF1086_CAE41560.1 topoisomerase IV subunit B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATPRYTEASIRVLKGLEPVRQRPGMYTRTENPLHIVQEVIDNAADEALAGYGKQIQVTLHGDGSISVEDDGRGIPVGLH
PEENAPVVELVFTRLHAGGKFDKQGGGAYAFSGGLHGVGVSVTNALATRLEVVVWRDGAVHRLVFAGGDVIEALAPYPEG
GRKKSGTRVRVWPDAKYFDSPAIPMAELTHLLRSKAVLLPGVKVSLVNEKTGDTRTWQYQEGLRGYLAEALAGAELMIPF
FEGQQYAGADHDSFAEGEGAQWVVAWAEDGNVVRESYVNLIPTPAGGTHESGLREGLFGAVKGFAELHSLLPKGVKLLPE
DVFTRASFVLSAKVLDPQFQGQIKERLNSRDAVRLVGCFAKSALDLWLHSNVEYGKKLAELAIRQAQARQRSAQKVEKRK
SSGVAVLPGKLTDCESSDASRTEVFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRLFANNEIHDISVAIGV
DPHGPGDEPDLSGLRYGRICILSDADVDGSHIQVLLLTLFYRHFPKLIEAGNVFVARPPLFRVDVPAQGKRPARKIYCLD
AGELEAAQDKLRKEGVRESAWSVSRFKGLGEMNPEQLWETTMNPDTRRLLPVGYGDLTPGDTTRMFDMLMGKGESSQRRA
WIEEKGNLAELDI
>SEQF1086_CAE41561.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAQAPDSSVPVRMVVDLTVDDYAAFTAYAYQRPALRRRHASHLRFAVLLAAGLLAVILLRVWDGRQLDWGAALPAYAQAL
AVGLAVFALLAAGYEYALPRLARGNVRRALGRQPDNPFLGRHTLDFGPRGVDDAAAGASGTMPWEAVGQVEETASHLYLF
ISPLQGVIIPKRGQSADVLQAVRAQLRAHVPGAVLADAADKQ
>SEQF1086_CAE41562.1 topoisomerase IV subunit A [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDSNQPGLFDGGATDPHEAITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQAMGLAAGAKPVKSARVV
GDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFGSRDGDNAAAMRYTEARLTPFSKLLLDELEEGTVDFVPNYD
GSQQEPAMLPARLPVMLLNGASGIAVGMATEIPSHNLREVAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADI
AQIYATGRGSLKARARWQFEEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKKSLSAEQQQAKAVMLSLLDAV
RDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNVPVNVVCIGTDGRPRQKSLRDVLEEWVAFRTDTVVRRTRHR
LDKVLDRIHVLEGRMVVYLNVDEVIQTIREAEEPRAALMARFGLTERQAEDILEMRLRQLARLEGIKIEQELAGKREEQL
RLQDLLDNPGSLKRLLIKEIEGDAKQYGDDRRTLIETAERAVLETKVVDEPVTVIVSQKGWLRARQGHGHDAGQFSFKQG
DDLYGAFECRTTDTLIAVGDNGRVYSVAVSGLPSARGDGQPVTTMIDLEAGTRIVHTIAAAPDSRWLLATRRGFGFAARL
SDMSSRQRAGKQFITLEKGDELLRPVPLFEGATQLALLSAKGKFLVFDLDEVKSLSGGGRGTILMGLDTADKLDQTVPIG
AAGLRAAGIYRNKQTEDILAGAALAPYVGKRARKGRQLNVRPRQPVLSPVF
>SEQF1086_CAE41563.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNDGTAAQRLAHLDALRGFALFGILVVNIGVFASVYYGTGLPDPAFSRPLDQWVNVLVAVLFESKFYLLFSFLFGYSFTL
QIDAAQRAGAAFAPRFLRRLAGLAVLGLAHAVLLYHGDILLTYAVLGALLLALRRTAPERALRWACWLALLAGLGWLALG
VLSLMTPQDPATLALTQEDALAALQAYRGTIGTTIARHIHDLTHGVWMVVLLVQGPFVLAMFLAGLALGRRHALADPLAH
PRLLRAVLAVGLPLGAAGAAVYAWSGLPGQPLGIDLIGLGAGMLTAPLLSASYAAALLLAMRRPAGARLARWLAPAGRMA
LTNYLLQSLVCAVLFTAWGLRWVGTLAPLSVLGLAVLVFALQLPWSAWWLRRHAYGPVEWLLRALTLARWPAWRIEPPPP
AARR
>SEQF1086_CAE41564.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE41566.1 putative glutathione S-transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTYELIGSRGCGSAIVEMALALANVPYTLTDLPYLKPGPGRDRLLSLNVTGQVPTLVLPDGEVMTESAAIVMHLHDVAP
AAGLAPPPGSAERARFWNTLVRLVAVVYATFTYGDDPAKWTLPGDAAELLRTRVHDRRAQLWQEIERGAGAPHVLGRRFS
ALDLYVVVMTRWRPGPPWFQSVCPRLAAAARRAAEESNVAQVLRRHFDPPLE
>SEQF1086_CAE41569.1 high-affinity branched-chain amino acid transport, ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLKLENIHTYYGAIQALNGVSVEVKQGEIVTLIGANGAGKTTLLMTVCGNPRAREGVITFEGKDITHAETHHIMRSGIAI
SPEGRRVFKDLTVAENLMMGGFFSRREEVDAGLEHVYTLFPRLKERAGQRAGTMSGGEQQMLAIGRALMTQPRLLLLDEP
TLGLAPLIIAQIFDIIRTIREQGVTVFLVEQNANKALQVADRGYVLENGRVVLHDTGANLLVNGQVRKAYLGG
>SEQF1086_CAE41570.1 high-affinity branched-chain amino acid transport, ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSETLLKVSGLTMRFGGLLAVDSVAFEVRRDEVFAIIGPNGAGKTTVFNCVGGFYKPTAGEIVMDGKPITGMPSHKVARH
GLVRTFQNVRLFKQLTVLENLLVAQHTQVEARLLPGLLKLKSYRQAEAEALTRAAQWLDFMGLREFANREAGNLAYGHQR
RLEIARCMITKPRLLMLDEPAAGLNPQEKRDLQSLIDQLRREFGVAVLLIEHDMSLIMGISDRILVMEHGKPITTGIPDE
VRNDPRVIKAYLGEE
>SEQF1086_CAE41571.1 high-affinity branched-chain amino acid transport system, permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQQSPLKNATIAAVMTAVIVTPIFGLQLVRQGARTLMEPRWDLVALACALVFAFQLLRPWISKPFKALKTGLPTLPSAL
ARGHKWLVVLLIAVSVIWPFFSGRSSVDIATLVLIYVMLGLGLNIVVGFAGLLDLGFVGFYAVGAYTYALLYHWGGWSFW
EALPFSGAVAALFGFVLGFPVLRLRGDYLAIVTLGFGEIIRLLLINLNMLTGGPDGISGLPKPSVLGMEMARRASTEGGQ
TFHEIMGWTFQNQHMVIYLYLMALALALATLFVSTRLIRMPVGRAWEALREDEIACRSLGLNPTRIKLSAFTLGAMFAGF
GGAFFAARQGMVNPESFTFIESALILAIVVLGGMGSQIGVILAAILLTVLPELAREFAEYRMLMFGLVMVLMMMWRPQGL
LPMKRPHVELRK
>SEQF1086_CAE41572.1 high-affinity branched-chain amino acid transport system, permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDLIPQLTQQFFNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIGAYVGLVTLTAIGTNSGLPLPFIIAAMLVVA
IFVTGVYGYSVERVAYRPVRGSPRLVALISAIGMSIFLQNWVALGQGARDMAVPALVSGAVQFHMGSSFDVTVPYSRIMI
IVVTVVLMVALTLFIKYSRMGRASRACSQDMHMANLLGIDTNRVISFTFVLGAMLAAVGGVLIAITIGKLNPFIGFLAGI
KAFTAAVLGGIGSIPGAMLGGVLLGLAETFAAAYISSQYKDIVAFALLVLILLFRPTGLLGKPEVEKV
>SEQF1086_CAE41573.1 leu/ile/val-binding protein precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKFSQRFTPLAVALGALAFAGAVHAADTIKIGIPQPMTGPNTQYGDQIQAGALTAIETINAKGGVKGKKLEPILIDDGCE
PKQAVPAANRVVNSGAKFAVAHACSGVTVAAVNVYEQEGIVAITPGATSSLVTDTIKPHFFFRTIGRDDQQGPFAARYIA
NTIKPKKVAVLHDKQTYGSGVATQVKDTLERNKVNVALFEGINVGDSDYSAIITKLKSAGVDFVYFGGYHPELGLLLRQA
REQGLNVQFMGPEGTANQDLVAIAGPAIDGLLVTLPSDFTKLPGNEGVVKAFQDAKRDPDGAFQMPAYAAVQLLAESINA
VGEDPAKVADHLHKNTFNTAIGKVEYDAKGDLKDFEFAVFKWDKNGKKTQL
>SEQF1086_CAE41574.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI
>SEQF1086_CAE41575.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSASRRYEPLRSGPFLLAVFCMGLVVVGSNILVQVPLNDWLTWGGLSYPVAFLVTDVLNRRYGPDAARRVAWFGFAAAL
AVSVWVASPRIALASGLAYLCAQLIDIRVFDRLRDQRWWRAPLISGVIGAVADTAVFFSVAFAGSDTPWVTWMLGDLAIK
LAVNISMLALFRALMWNLARPAEARPAQASTGR
>SEQF1086_CAE41576.1 pyrroline-5-carboxylate reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKNDLSIAFIGGGNMAAALASGLAGKVCPAANIHVVDINADSHAGWRARGMSAAAAPDATLAGCRVWVYAVKPQHMREAV
AGTRPWLRPDTLIVSVAAGIRADTLAGWLGEPGQPWQRLVRCMPNTPALVGAGMTGLAALPGVTPQDRELAGQLLTSVGE
VVWVDGDAGLDAVTALSGSGPAYVFLFIEALIAGGRAVGLTDEQARQLALGTLAGATRLAAQSDEPPAVLRERVTSKGGT
TAAALDVYAQGDFAGLVERAMQAAARRSRELAEEFGR
>SEQF1086_CAE41577.1 glycerol-3-phosphate-binding periplasmic protein precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRSQRLALTFAAVMAAFAGASAHAATEIQFWHSMEGALGDRVNGLVEEFNKQNADYQIKAVYKGNYGESMNAGIAAFRAG
NAPDILQVFEVGTATMMYAKGAIKPVQQMSEEVGDPIDPKQFIGAVAGYYSSPEGKLVSMPFNSSTVVFYYNKDAFKKAG
LDADKPPKTWEELAAVGQKLKAAGQECGYTTSWPSWVQLETFSAWHNVPYATKDNGFAGLDARLAVDTPLHVRHLDNLAK
LAKEGIFMYGGRGDEPNSLFISGKCAMITGSSGLRANIAKNAKFEFGTSTLPYYSDVQGAPQNTIIGGASLWVFANKKPE
TYKGVTKFFKFLASPEIAARWHQQTGYVPVTKAAYELTQKQGFYDKNPGTDVGVKQLNVETTAQSRGLRLGYLPQIREIE
DAEIERIVAGKVPAKDGLQSIVKRGNELLEKFEKSVK
>SEQF1086_CAE41578.1 sn-glycerol-3-phosphate transport system, permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEKRVVFGHKTLPYLLLAPQIIITIVFFFLPAGQAMWQSLRLEDAFGLSSEFVGLANFADLFSQQSYLDSFRVTAVFSAL
VAFVGLAVSLLLAVMADRVLRGAGLYKTLLIWPYAVAPAVVGVLWLFLFSPSVGILAVALNGMGVNWNPRLDGDQALILV
LIAAVWKQISYNFLFFLAGLQSIPRSLIEAAAIDGASPARRFWTIVFPLLSPTTFFLLVVNIIYAFFDTFAVIDTTTQGG
PGTATSILVYKVYSDGFRGLDLGSSAAQSVVLMAIVVALTVLQFRYIDRKVQY
>SEQF1086_CAE41579.1 sn-glycerol-3-phosphate transport system permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVERRPWLDILAHFILLCGVALVAFPIYVTFVASTQTAQEVASAPMSLIPGKHFVDNYMQALFAGSGGGSYGAPVGRMMY
VSLIMALAISLGKIAISLLSAFAVVYFRFPGRMFFFWMIFVTLMLPVEVRIAPTYKVVADLGLLNSYAGLTLPLIASATA
TFLFRQFFLTVPDELVEAARIDGAGPMRFFRDVLLPLSRTSIAALFVIQFIYGWNQYLWPLLITTQEDMYPVVIGIKRMI
SGGDSVTEWNITMATAILAMIPPALVVILMQKWFVKGLVDTEK
>SEQF1086_CAE41580.1 sn-glycerol-3-phosphate transport ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATLSFRNVKKTYAGNVPVIHGIDMDVADGEFIVIVGPSGCGKSTLMRMVAGLETVTEGEILIDDKVVNTLEPAERDIAM
VFQNYALYPHMSVFDNMAYGLKIRRLPKDEIRKRVEAAAQILELGKLLDRRPRALSGGQRQRVAMGRAIVREPKVFLFDE
PLSNLDAKLRVAMRLEILKLHRRLNTTSLYVTHDQVEAMTLAHRMVVMYQGVPEQIGTPMEVFEKPASTFVAGFIGSPPM
NLLEVAVGGDGIVHTSDGIALDISPLAVPQQVRGRKVVMGLRPEHMLLNAQGLAAEIEMVETLGSEQLVHGRCGKHMVVV
RCSTRQFSETPARVGDTLTIGPDGRHPLHWFEADTGRRVEGL
>SEQF1086_CAE41581.1 leu/ile/val-binding protein precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNKAFRFTPVIAALGMAAGIAMSAGAHAQTIKIAVVGPTTGQVTQYGDMVREGVDTAIERINATGGVNGKKLEAVVIDDG
CEPKQGPVAANRVVNDKIGFVVGHVCSGATIAATEIYNNEGVVMVTPSATSPAVTDGKNYEFIFRTIGRDDQQGPAAAKF
ILEKIKPKTVAVIHDKQSYGQGIATAVKDTLEKNGTKVVIFEGINAGDSDYSAVITKLKAAKVDFVYYGGYHPEMGLLLR
QGAEQGLDAKFMGPEGVGNPDINAIAGPAVEGMLLTLPADFTLNPVNAEIVKAFKDKKRDASGAFQLTAYAATQVIADGI
KGAGSEDPTKVAQYLHANSFQTPIGKTSWNKQGDLNAFEFEVFTWHKDGSKTSYK
>SEQF1086_CAE41582.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRLQPIIVPGWQGSGPGHWQTHWSRTLPHAVRLQQRDWHQPQRAEWVAALAAAVDAAPTPVLLVAHSLGCLVSAALPIAL
RAKVAGALLVAPADVERPGAPAAIAAFGPVPRQSLPYQSVVIASDDDPYCRLERARQFAQDWGSRLVVLQGAGHINADSQ
LGAWPQGLKQLAALRRRACWRISPPAEKIPPVPAGIMAPPRYG
>SEQF1086_CAE41583.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE41585.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDRQLIVLAALNIMVAVGAGAFGAHGLRRVVDPTLLAIWHTGVLYHLIHALGLFVVALLGARFGSPLLSMAGLVMFIGI
LLFCGSLYVLVLTGTRWLGAVTPLGGVAFLAAWAMVAWAAWRAPA
>SEQF1086_CAE41586.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSIAIAEKSPARGAPKRRAPAARKRALEEEARVDSFADLVDSPLIAMAHGVQRGLSPRLLDDAADYLQVPKSEIMAITEV
KAASLSRWMRDGQALPLGESDRLARVARVTKVARQVLGGDAEAVQWLNTPVPALGNVKPLSLLTSDASSRIVEDTLARAA
AGVYA
>SEQF1086_CAE41587.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSHVSLWRIATTAGKYRADDLSGAGAGAAAVGGRYNSPGTAVVYASSCVALAVLETVVHFAAPATAQANRYLIEIVVPRA
VYEARQVLEVDALHKRHPFWDAVPFAEVSQRIGDAWVRGNGSALLQLPSAIVPCRGVPDCNLLINPQHPDAASVRVARRE
KFIYDPRLAPGGPRQ
>SEQF1086_CAE41588.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRIRSGWMQWLGALALWCAAAGAGAAQQAPLRIGVIASVANEATEIAIAQARAQGLEVKLIEFNDWVMPNIAAAEGSIDA
NFFQHEPFLQLFNRSRGTHLTPIAYGYSTTIGLFSKKLKKGDAIPQGATIAVPNDPVNTGRALQLLASIGLIGLKPGAGH
QATLQDVTDNPRRIKLVQLEGSQSARTFDDVTASVTYTTFAKHAGIDEKDGLAFDNTDPETVRRYAIRWVATPERAQDPR
LLAFIRIYQSSPEVKATLRRLYGELIDFPWE
>SEQF1086_CAE41589.1 putative L-lactate dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRPGHRRRFWSSHVVFRTAPVRRLRRPRRRLPRPIFGYVAGAAEDNQAHDDNRRAFAEYGFLPRVLVDVSARHTRTELFG
QEWAAPFGVAPMGISALSAYRGDIVLARAARAAGIPAIMSGSSLIPLEEVARQAPGTWFQAYLPGDPGRIDALVERVARA
GYWTLVLTVDIPVSANRENNVRTGFSTPLKPGLRLAWDGLSRPRWLAGTFLRTLLAHGMPHFENSFATRGAPILSANVLR
DFSARDHLDWSHVQRIRRSWRGELVIKGIMHPRDAALARAHGADGIIVSNHGGRQLDGACAPLRVLPDIAEAAGAMAVMM
DSGIRRGGDVLKALALGARFVFLGRPFNYAAAVGGEAGVAHAIGLLREEIDRNMAMLGVTRCTAMAPGLLRRL
>SEQF1086_CAE41590.1 phosphatidylserine decarboxylase proenzyme [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPFKDQLFLASQYLAPHHLVSRLMGRVADCRAPEIKNRMIARFVRRYNVDMSEALVEDPLAYASFNDFFTRALKPDARPL
DDEPGAALCPADGAISQIGAIDNGRIFQAKGHSFGLTDLLGGDAERAAPFAGGQFATIYLSPRDYHRVHMPLAGTLREMV
HVPGRLFSVNPLTARSVPELFARNERVACLFDTEHGPMALVLVGAMIVASIETVWAGLVTPHKRQVRSVRYDAAARAPIH
LDKGAEMGRFKLGSTVIVLFGPKRLRWLDLPSVRGPVRMGETLALPASTAISFPESE
>SEQF1086_CAE41591.1 hypothetical protein BP1295 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTESARPTPATILLYTEEQRGNQWVESIVVGMLSDISGADKLVVIKDPHSGIKFVYRVEHDCNNLDAAAITELDETHFDG
KRTTAINGMNYRMGNPDSAMKLLRAKPRWIQDKGAVLSVLLRNAAARSTSFVSRRIDRERLTRVPADAPVERLPQP
>SEQF1086_CAE41592.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKYRATALPPPRLKLLCAAGALALLAACGSAPPADITLAGAAPAAAGAEPATIGDVRTERIQWASAKPGCTGECPRVEID
SVSFPGIPALSELVDRQLAAMTGVDQNLRGRYQTLSEYTQYFWKTAQARDATYFKASVKDVVGDIVAVELGTTQFLTGAA
HGIPATHYLNWQRSQGRPLTLDEVLIPSRKAEYVVAMREAHQRWLAANEDAQHDRAAYDRMWPFQETTNFALTRQGLVVK
YDAYTIAPYSHGQPEILIPYERLRGVLRPEFIPAG
>SEQF1086_CAE41593.1 putative lipoate-protein ligase A [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRTAWTDYDWQLIHPGPLPPALHMALDAAITDEVGAGQRPPTLRIWEWSQPAVIIGRFQSLRNEVDPDGARRHGVTVVR
RVSGGGAMFVEPGNTITYSLSVPQALVAGMSFQESYAFLDAWVIRALHELGIKAWYQPLNDIASDAGKIGGAAQARRAGA
VLHHVTMSYDIDADKMVEVLRIGREKLSDKGTTSARKRVDPLRSQTGLARDTIIERMLQTFAGMCRLTPAEIGAATLQAA
QRQAEEKFSSPEWTALVP
>SEQF1086_CAE41594.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKGIPAMHGEYKVPGGKLVVIDLEVAQGRLRQVRLSGDFFLEPPEALEAINRGLDGLPADAGAEGIAQAVRAALPAEAEL
FGFSPEAVAVVVQRALS
>SEQF1086_CAE41595.1 putative acetyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTATLSFRRAAATDLPAIIALLADDAFGQQREDPTMPPQPAYLAAFGAIDRDPNQLLAVVERAGQIIGCLQLSFIPGLSR
RGLWRGQIESVRVAASERGAGTGRALFEWAIAQCRDKGCGLVQLTTDKQRADARRFYESLGFKATHEGMKLDLA
>SEQF1086_CAE41596.1 putative glutathione transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIDLYYWTTPNGHKITLFLEETGLPYRIHPVNISKGEQFQPEFLAIAPNNRIPAIVDQAPADGGTPIPLFESGAILLYLA
EKTGQFIPADLRGRADVLQWLFWQMGGLGPMAGQNHHFSAYAPERIPYAIERYVKETNRLYGVLDRQLAQREFVAGDYSI
ADMAAYPWIVPHERQGQDLNEFPNLKRWFEAIGARPATQRAYALADRINTKPSVDTEESRRVLFGQTAANVRR
>SEQF1086_CAE41597.1 glutathione peroxidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTMYDFSAPTITGAERALADFRGQVALVVNVASRCGFTPQYSGLEELYRSYRNEGFVVLGFPCNQFGRQEPGDEAAIAQ
FCETQYAISFPLFAKIDVNGAHAHPLYRWLKARKPGLLGTRAIKWNFTKFLVGRDGLPLRRYAPAHTPESLRHDIARACA
APGPTP
>SEQF1086_CAE41598.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHRRQLLKLAAAAPLTLYGTRLLAAGPPDTRLLVVFMRGAYDAASLLVPTTSEFYYESRPHIAIARDAAAALSDGWALHP
AVKDSLLPFYQRGELAFVPFAGTDDASRSHFETQNRIELGRAGGSGAAPASGFLNRLAAQLDGKAGRPAAFTEDVPQIFR
GQARVPNIDLGGAKRKSRLTADSSSAIAQMYQGTGLDASVNEGLAAMGQARAALEAEMREANGGAGNTEKLEQEARRIGT
FMAERYNLGFVDVGGWDTHVGQGAANGVLATKLGQLGRALAAYAQAMGPAWRHTTVVVISEFGRTLRENGNKGTDHGHGS
VYWVLGGGVRGGRIAGEQVAVKRDTLFQDRDYPVLTDYRALFAGLFGRLYGLDAQRLQAVFPGARPLDLKLV
>SEQF1086_CAE41600.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQAMTERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL
AAAQSRGDQQVVKELQVFLRRLAREDAQHGG
>SEQF1086_CAE41601.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGNLKDLHPPVARGQAHTAKGARVALQNLWGAAGLPDEALDHVELHGAEPVLPSSFAVGTAAQASIAAAALAAAEIWHLR
GGQRQRVAVDMRHAAQECRSYFKINGVTPNIWDKITGVYPCGDGGWVRIHANFPHHRDGALALLGCPPGEAATREMVERA
LARWRAGDFEQVAADAGMVVAAMRSFDQWDRHPQGLATASQPVVRIERIDNADPRPLPKYGHEATPLQDIRVLDLTRIIA
GPVCGRALAAYGADVMLINLPHLPNIDNIIDTSRGKLSVHADLETADGRIALGNLLRSAHVFVQGYRPGGLQALGFGPED
AARIRPGIVYVSLSAYGDSGPWAGRRGFDSLVQTATGFNHAEAQAAGQEAPKAMPVQILDHASGYLMAFGALAALARQRI
EGGSWHVRVSLASTARWLRELGRVPDGLACPMPPIEELLYAEESGFGELTAVRHAAQFSLTPARWTRPAMPPGSHPTVWP
FR
>SEQF1086_CAE41602.1 putative arsenate reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFHRGVCMSATIYHNPRCSTSRNVLQMLRDAGIEPTIIEYLKTPPSRQTLAGLIQQSGLSVREAVRAKEPIYQELGLDGV
DDEGLLDAMVDNPILINRPFVITERGARLCRPAESVREILP
>SEQF1086_CAE41603.1 putative bacterioferritin comigratory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRPALLLAALLSIAAPAAHAALPVGAPAPDFSAQASQGGNTFTFELAQALRQGPVVLYFYPAAFTQGCTIEARNFAEAI
DQYRALGATVIGVSGDDIETLRKFSVSECRGKFPVAADADGAIMKAYDAVHDRRPEYAQRISYVISPQGRIVYEFTDMSP
DRHVANTLQALRDWQARKK
>SEQF1086_CAE41604.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41606.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIKSDDAGKLILRLALGILVIMHGLAKLSSGVGGIAGMLSSHGLPGFLAYFAYVGEIVGPLLIILGIYCRLGALLVVLNM
VVAILLAHMGQLFSISNTGGWALKLQGMFLFGALALAFMGAGRFSLAGSGGRWN
>SEQF1086_CAE41608.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIALPSLEQAAEVRVSRQGGVAFVLALVRTRRFELGACSATLRAQIDAALHSAAGQARDACGQGDQRYFRVEVHFGAGSR
AEPLRFDVPEELAPHDLVWLWRSAPAR
>SEQF1086_CAE41609.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRARFLRLAGAAALGLAAPRVPAAPSLLTRPVPADGSPLPVIGCGTYIGFDVARPSAEYDALGEVVRTLFAAGGTVLDS
SPMYGRAEAVTGRLLAEAGLRQRAFVATKVWTSGRAAGLAQMQASLRQLGGERIDLMQIHNLLDWRTHLPVLREWQAAGR
IRYVGISHYTASAYDEVEAVLRAERLDFLQINYALDDRQAAQRLLPLAADRGVAVLVNRPFGGGGLLRRLAGRPLPSWAA
DIGATSWAQVLLKFVLSHPAVTCAIPGTGRAAHMRDNLAAGMAAPPPLSFWNDKA
>SEQF1086_CAE41610.1 universal stress family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLKILVPVDGSECAVRAVREAIKVANDSKGAQLHLLNVQLPLISGHAKMFLRHNELQSYYQAEGEAALATVLPVVAESGI
PFESEMRTGQYGETIANYAKEKQCDRIVMGTRGLGAVGGLLLGSVARKVIHLADVPITLVK
>SEQF1086_CAE41612.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGRLFSERPQMSRTSLSSLAPRPHRLLSLAWAATVLSLRVGMGISGLFCAWRYLVDLRPVRPLFDGVAAGATPLALYAAF
EAGCAVLLMAGASTRIAAAGMTAAHIAGVALALPAHGLWIPLPSALWLACLALLWCHGPGPCSVDACLHPAAIAPLSPPP
DDPAQRPI
>SEQF1086_CAE41613.1 GntR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSITGASAAEIFDSVRQLAQARRLLPGQALPPVRELAQTLGVNRNTVAAAYKRLVGAGLALSQGRRGTIIRAPSEPGEQD
GAHPGSPLIDLASGNPDPARLPDPLAIMAGRASPPRLYGEATVDPRLQAYASQWYAGDCPAAFEVDLTHGAIDAIERLLG
ANLAAGDTVAVEAPGFLGSINALRALGLRAEGVALDAAGMLPDALERALADGAQAVLLTPRAQNPTGASLTRARARALRQ
VLQRYPHVMVIADDHFAHLSASPYHSPIPAAALRWALVRSVSKALGPDLRLAFVASDPDTSRRLRLRLASGTTWVSHLLQ
DVVAGCLASAPVQARMAQARRAYAQRRAWLADALRAEGIAAQWPADGLNLWVPLAQDSPALLLELAHRGWRLRNGRSFGV
REDVHGLRITIATLEHATARRLARDLRLCLDARDGLKKYPMLL
>SEQF1086_CAE41614.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHADTAQDAPDAAARYPRADSVADFEHNLAAVRARMAAACQRAGRDPAGVRLLPVSKTVDEARIRMSYAAGCRELGENKV
QEAYRKWEAMADLADLRWSVIGHLQTNKAKLVARFAAEFQALDSVRLAEALERRLQAEGRALDVYVQVNTSGEASKYGLH
PDEAAAFIRQLPSYGALRVRGLMTLAVLSADAARVRQCFVLLRTLRDRLRQEAPAGVSLDELSMGMSGDYEIAIEEGATV
VRVGQAIYGARALPNDYYWPDSGAADRAEDE
>SEQF1086_CAE41615.1 pyridoxine kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMKLAAPNPQALAPLPIDVVSIQSQVVYGQVGNSVAVPVFNGFGLRVAAVPTVVLSNTPHYPSMHGGAVPLDWFEGYLAD
LGARGALAGVRVVQLGYLGGPAQAEALGRWIAGLVAERPDLRVHIDPVIGDHDSGVYVAPGMVAAYRDHLLSLAQGLTPN
GFELECLTGLPTGTMEQTIAAARTLLGGRARWVIVTSAAPATWPPGRVRVAVVTHDDAQVLEHAHVDTAPKGTGDMFGAA
LTGHRLAGQPVAEAARRAALQVIEALERTREAGCGELLLAGPLR
>SEQF1086_CAE41617.1 probable alpha amylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIRATVRLQLHAGFTLDAAGAQLDYYDALGISHLYLSPVARARCGSTHGYDVIDHAQVNPELGGLAALRRLAGAARARGM
GLILDIVPNHMAAHPDNRWWREVLRDGPASAYADWFDIDWRPPGRTLRGRVLLPVLTCGARAALASGEIGLRAGSDGTPA
LHANGLDLPLAPASLPMAALLLHHGGTPAQWHALLRAQAYRLAWWRSAAQAINWRRFFEIGDLVGVRVERPEVFDAVHAL
PLALYRAGLIDGLRIDHVDGLAEPGAYCRRLRAELAQAGQARAARGLSAEPYVVVEKILGDKETLRTDWPVQGTTGYDFM
NEASAWLHDARGAAPLAAFWRDNAGTWPHWREQLRRIRLRLLRRHFGAERRALARSLADLPELRASAAAIDPVLTQWLAC
FPVYRTYAEGGAGQAADQAWRQTAQTRANAHLDPAQQALLAALCLALDGRMADAPHRLALRRLQQLTPPLAAKALEDTWF
YRDGTLLSRNEVGPAPAQFALGGGALRRSVAARARRHPQALLATASHDHKRGEDVRARLAVLSEMPQQWCDWARQWLADA
GGSAAPPAWADRYMLLQTLVGAWPADLAPDDQAGMAALLRRVAAWQAKALREARQRSSWTCPDLAYETLCARYLRALADD
GAALPAVAALARRLAPAGLVNSLAQTALRLGLPGVPDLYQGCETWDLSLVDPDNRRAVDYAARRGALASLGNGALALPEL
WRDGRAKQALVARALQWRREQPALFEHGACRWLRVSGARARHVLACLRTRGPQQALIVVPRASALALAGQTGPDRDAAAH
WRDTCVHLPADAPPWRDILTHAGHQGRALALSELLARWPVALCRVQS
>SEQF1086_CAE41619.1 probable alpha amylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNEPAPLGATVCAPGKIRFRLWAPSAPPALALEIEGRAPIALRPGPDGYAQAIVDGAPGLRYRYRLAADCVVPDPASRLQ
DGDVHGHSVVVGPDRYPWRHTGWRGRPWQDSVIYEAHAGLCGGYAGLRRRLPEVARLGVTLLELMPIADFPGPRNWGYDG
VLPYAPDTAYGTPDELKALIDAAHGLEMGVMLDVVYNHFGPDGNYLHRYAADFFDARADTPWGAAIDYRQQAVQRYFIDN
ALYWLRKYRFDGLRLDAVHAMGRTDWLAGLAREARAACPDRRVHLVVENDANQASLLEQGFDAQWNDDAHHVLHHLLTGE
RQGYYADYAQAPAALLARALGEGYVYQGQAAPTRGGRARGEPSAHLPPWAFVLFLHNHDQVGNRADGLRLTSLLAPGSPA
LRAAIALQLLAPHIPLLFMGEEYGSTAPFFYFTSHGPELAAAVRAGRAREFAASMHDCDPPPDPNDPDTYRRSCPWPPPG
AERQAWFEYYRELLRLRARLLGERLTGARADGAAALGPAAVRAAWRLGDGARLTLYANLLPGSVIVPAPPAGQLAYATLA
GAGQDLVAGVLRGGCALALWEPAP
>SEQF1086_CAE41620.1 probable glycosyl hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYPSLPDRLLPGLPAPLGATSDGLGVNFAVFSANAARIELCLFDARGRKELARLPMPECTDEVWHGYLPDAQPGLVYGYR
AHGPYNPRAGHRFNPHKLLLDPYATALTGALRWSDALFGYRMQHPRADLSMDRRDSAAGVPKAVVTEPAFHWGATRRPAA
AWAHTVIYEAHVRGVSMLRSDLREPIRGTCAALSDPRFIDHLHRLGVTALELMPVHAFLQDRTLVERGLRNYWGYNTLAY
FAPEPAYLADGQPHDLRRAIRRLHAAGIEVILDVVYNHTCEGNELGPTLSWRGLDNASYYRLVPGDERRYIDDTGTGNTL
NLSHPRVLQMVMDSLRHWAVHYRVDGFRFDLGVTLGREGTGFDAGSGFFDALLQDPVLARVKLISEPWDVGPDGYQLGRH
PPGMAEWNDQFRDTARRFWRGDAGMAGALATRLTASRDVFDHRHRRPWSSINFAAAHDGFTLQDVVSFAERHNEANGEDG
ADGHGENYSSNWGVEGAASSAAIRETRARVQRALLATVMLADGTPMLLAGDEFGNSQGGNNNAYCQDGPMGWLDWAVAQS
TPGRALTAYAARLAGLRRAHPSLRATRYGDPAHQWQEGLGAIDWFNGRGAPMTSADWDAPEGRLLVLRRALPDPAQPGRV
DVTLLLCNAAAEPRPCVLPAPTLAWTLALDSASPEAPAAPCDGGEAIVGARAVLLLTASVDGAHAP
>SEQF1086_CAE41621.1 1,4-alpha-glucan branching enzyme [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMRDSPSIQGTLDAATQHALLAGRHADPFSVLGPHQAGAHTVVRVLAPGARTVMAVLPGGQRTPLLPMQPGLFENTVPGL
QPGAPAAYRLCIEWEGGIQHTADPYAFGPVLDAAQLDHCAAGGWRYLAGLLGAHAASVDGCAGTRFALWAPNARRVAVVG
DFNGWDGRRHAMRLRYPAGVWELFLPDVGPGARYKFQVLGADGHTVLKADPLARQAEAPPATASIVPDERPFAWTDKAWM
EQRAARQRCDAPISIYEVHAGSWFDDAGAPRWQNLAARLPEYARSLGFTHIELLPVMAHPFGGSWGYQPLGLFAPAAAHG
APADFAHFVDRCHEAGLGVILDWVPAHFPDDAHGLARLDGTPLYEHADPREGRHPDWNTLIYNYGRREVRTFLIASAIHW
LRHYHVDGLRVDAVASMLYRDYSRPAGQWIPNRHGRRENLEAIDFLRELNAAVGVQCPGAITVAEESTAWPGVTAPVANG
GLGFDYKWNMGWMHDTLRYMRRDPIHRRHHHHDLSFGMVYAYAERFVLPLSHDEVVHGKGSLLGKMPGERAAQLAQLRLY
YAFMWAHPGKKLLFMGGEFGQQGEWNHDAMLQWSLLDDPAHRGLQRLVADLNHVYATLPELHCRDADPSGFAWIVGDDAD
NSVLAFARVDASHCLVAVCNFTPVPRPGYRFGVPHAGDWRVRVDTGATRYGGAGGGPPICLRSEPIPAHGHPQSLVLDLP
GFTALYLRHSE
>SEQF1086_CAE41622.1 alpha-glucosidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPATHPAPDPLWYKDAVIYQLHVKSFFDANDDGVGDFAGLLAKLDYIVELGVNTIWLLPFYPSPRRDDGYDIADYRGVHP
DYGSLADARLLVRAAHARGLRVITELVINHTSDQHPWFQRARAARPGSAHRAYYVWSDDDKAYAGTRIIFCDTEKSNWTW
DPVAGAYFWHRFYSHQPDLNYDNPQVLREVLGAMRYWLDMGVDGLRLDAVPYLVEREGTNNENLPETHAILRRIRRVIDS
EYPGRMLLAEANQWPEDAQEYFGAGDECHMAFHFPLMPRMYMAIAQEDRLPVTDIIRQTPSIAPQCQWAIFLRNHDELTL
EMVTSRERDYLWNVYAAEPRARINLGIRRRLAPLLERDRRRIELMNSLLLSMPGTPVLYYGDELGMGDNIHLGDRDGVRT
PMQWSPDRNGGFSRADPERLPLPLLMGPLYGYEAVNVEAQQRDPHSLLNWTRRMLAKRRQSHVFGRGELSFLYPGNRKIL
AYLRTWEDTVVLCVANLSQAAQPVELHLSEYAGRVPVEMLGGTAFPQIGELPYLLTLPPFGFYWLDLSAGAAPPAWHSEL
PPQMPESITLVSRGAGAALRLTEASRRQLEADVLPAYLQRQRWYAARRKPGVMRLAYSVPLNDDVESYYEAEIEVSDDGP
PRRFHTPVALAWQDDTAAQYPLARVRRGAQLGTLTDASLQPGYARVLLAALTAGRDIQAGGEPAVRLRFLPEPGLADLAL
RDDSEVRALSADQSNSSLLVGERVVFKLLRELHAGPHPEAEMTRYLTQAGYAHTPALLGEVVRVQGDQAPHTLALAHAYV
VNEGDAWNWTVAYLKRTLDAAILTGASADDYQQELAGYEVLAGTIGQRLAQMHSVLARAGELPGFAPRPASERDAALAGE
RAVAQLDRALQALRACESGLAPASHACAQWLFEHRDRLAAHIMTLAQAETGALRIRVHGDFHLGQILVAQTDAYLIDFEG
EPARPMAERRQLSSPFKDVAGILRSFDYAVAELSRDDPLGGAPRDFNTGVAEPADPASAPRETREALLARFRQRAGAALL
ASYGNAIDPVLALPPERAQALTCLYLLEKAAYEICYESAYRPERLPVPIHGLAETARAALLAAAVDHDEGPAP
>SEQF1086_CAE41624.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR
>SEQF1086_CAE41626.1 hypothetical protein BP1333 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPTPTSQDRKQDDDTQREAQRSHGSQQARTKKDGHVSQIGSNQDQSSQRNRGQGARRS
>SEQF1086_CAE41627.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFDTQVAGTLLTPRAKLPGVLFVHGWGGNQRFDLSRARDIAGLGCICLTFDLRGHAATEAQRRQVTREDSLRDIMAAYDA
LIAHPAVDTSAIAVVGSSYGGYLAAILTTLRAVRWLALHVPALYRDDEWAQPKLQLDRAAISAYRHATVAPEGNRALSAC
SSFRGDVLIVEAEHDDYIPHSTIMSYRGAFLHSHSLTHRIVDGADHALSDKRCQQAYSSILLNWATEMVVGARVGAGRPA
>SEQF1086_CAE41628.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNPAAAVPRRPVDLVVAHPGRRDAPRHERASLRALGLDIAELLGCEYADALPAAARDPRLRVYYVPARTLLDGRALALGI
QGPDDLFGGVAPHGFVATKAITHALPHDGCAAPAAWSRELGARLSDCVLPGCTVFALDEARQGGARMLRTSALRVKPVRA
TAGRGQRKVADAAALDQALAEQDAGEVRRYGLVLEEHLEDISTYSVGVAQVGVHLASYIGTQSLTLDHAGLEVYGGSDLW
FVSGPLPALLQLELDAPRRTALEHAMRYDEQAFACYPRLYASRRNYDVARGRDAQGRWRTGVLEQSWRAGGASLAEIAAL
RAFAQGGGLRRAHAATSEHYGPDPAHPPGTRIVFHAHDAEVGFISKAGGMTQDNGTDDDDT
>SEQF1086_CAE41630.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR
>SEQF1086_CAE41631.1 probable phospholipase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTPWRDGNRFAILENGASYFPRVYTAIGKAREEILIETFILFDDAVGRELREALMAAARRGVRIDVTVDGYGSDSLPPD
FIAGLVELGVGFHVFDPRPRLLGMRTNLFRRLHRKIVAIDGTLAYVGGLNFSADHLDDYGPQSKQDYAIEIAGPLAADIR
DFARAALAAVPRRRWRRARPAAPPQAAGPARARLVVRDNDQHTNDIEQSYRVAIRAARRDIVIANAYFFPGYRLLRDLRA
AAARGVRVRLILQGEPDMPIAQLGARLLYDALAEAGVEILEYCERPLHGKVASIDDEWATVGSSNLDPFSLALNLEANVE
VRDSAFASGLRERLERLAIDHCRPAPQSDGAGRQLRRLFAGALVYHFLRRFPAWAGSLPAHKPRIQTLRPDGQGQPDEAT
>SEQF1086_CAE41632.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPPEPIRLRILTVNAHKGFTSFNRRFILHELREALREARPDLVFLQEVLGEHQRHAARHARWPAVSQYEFLADTLWSAYA
YGRNAVYPDGHHGNAVLSKYPIVSHRNEDLSVGAAHEPRGMLHCVLDVRDAPAPLHALCVHLGLREAHRQEQLRRLCQYL
RQHVPAQAAALLAGDFNDWRQRADATLARCGLADVHRLALGHAARTFPAACPLLRLDRIYVRNVAGSEPRRLSRRPWSRL
SDHVPLAAEVTL
>SEQF1086_CAE41634.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHPFHVFAMSAHGGRGGGHAGGRHGGGHGAGGDGPDWRRGRKFSADDLQLMILALLDEGPSHGYELIKALGARSRGFYTP
SPGMVYPTLTWLEEAGHATVSQDGARKHYHLAEPGRAHLQANRERVTLLMAQLAHVGRKMEWMRRAWAGQPIETGSEGED
LATGWLPEYVQARMALKQALARHADATPARQRQLAAILARAAAELDDLSS
>SEQF1086_CAE41636.1 autotransporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRSARRRTPARLAPLPAMLAAAGLLQSLGATPAAAACAPTLAPASGQSVQCDGAVVNQSVEAAAGSQNVTITVAPGALFS
TNATRALSVDDRSRIVNEGTIQMAGGAGASRGAMVGFGDNNQLINRGSITTSGSGVRGISVPNVGSTGTLVDNSGSIRTQ
GASAHGIAINGPGNRVQNSGAITVNGTDAKGVYLQGGSPAANVLVNGGTIHARGASSNGIFGPDGVHVNTTNANGFHARV
ENLPGGRILSDHSYALRGQNGNDTFINAGYLQGHGGAGRDTAVYMGPQGTGTLILRTGSAIAGLADGGGAASHAYLEGSG
TVDNRFANFRTLTMRGADWRWTSDAAFTESVDLRTGTFFLAGTLASPANRLAAGAVLAGTGTLAGALRNAGEIRPGPNDG
SGYGALTVRGDYTGAGGALRVNTVLAGDGAASDRLVIDGGHAGGSTPVTVVNRGGQGALTAADGILVVQAINGASSDAGA
FSLAAPLNAGAYEYRLYRGGATGAAPDSWYLRSRAYLVEDQLAGSLAEAEAIADDIGRRTGERPSIEDTPLYRPEVALYS
SIPMLARRMGLAQLGTFHERQGNQALLARDGERVAAWARAYGGNSKQALDGDAQPGIDARLAGVQLGQDLYSSVRPDGGQ
HRFGLFGGYGQARGDTHGSAGGERDAATGRLTIDGYSVGGYWTYVGPRGWYVDAVLANTWMDIDTDSKAGRDADTRGQAF
TASLESGYPLALSERWTLEPQAQLIYQHTRVDGFSDAVSEVRIRDDNALTARLGARLQGEYAAAAQVWRPYAALNFWRTF
SGENTVVLGEDSIDTRRGATSLELAAGASVTLARSLALYGRLAYATSIDSQYLRGASAQLGMRYTW
>SEQF1086_CAE41637.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQQLGATRRYAASDLVGFLACEHLTQLDLRALDAGQAPAAADDEQMALVQAKGQAHEQAWLERLRARHPDLADVTRAGPD
LAARLAATRAAMAAGAPVIYQAALCHGPYVGHADFLLRTECPSALGDYGYEALDTKLARSPRASFVLQLSFYAWLLEHAQ
GVAPRSMHVVLGSGRELALRVADYAHYLRQVLRRFEAAIAAEPAPPTYPEPCEHCPQCRWRVACEARRVADDHLSLVAGM
SRQQARRLNAQGVATLAQLGALPEHAQVAGIEAGTLQRLRAQAALQWRARVDGARHYELLAAQDEGPRGLARLPRPDPGD
MFFDMEGDPLEDGGLEYLFGLYVIDDGAERFVPFWAHDRRQEKQAFEAFMDFVAERLRRHPDAHIYHYAPYEATALKKLM
SLHGTREAEVDHLLRAGKLVDLYRVVREGLRISEPSYSIKYVERFYLPRRAGEVTNAGASIVYYERWKATDEPRLLQDIA
DYNRDDVISTWRLRDWLCGIRPAALPWHNEAGQQDLDAARAVIGEMTEAERRLLPYRAALADDLPADEAAWSPRDAFRAL
AWHLLDFHRREQKPAWWAWFARAEATDGELIEDAECLGGLARDDAAPPVRQAQSLRYTYRYPAQETKLRTGARCTDVRTG
ASLANLVVDPHARLASFTCSARKPAPPPRMALGPAAPVNNKELVNAVFRYGDAVCRAPDGMSMPMRAVDALLRREPPRIR
GLARGAPLVAPHAELLPQVLDVVARMDETTLFLQGPPGAGKTYTGSRVLLQLLRAGRRVAVSSNSHHAINNLLRGLERLA
EREGFALRGAKKSTSAGDDSCLGGAQIEDVFDNKDVDPARHQLVAGTAWLFARPEFEQAFDYLFVDEAGQVSLANLVAMG
QCARNIVLLGDQMQLGQPSQGTHPGRSGESALDYLLDGQATIAASQGVFLDTSYRMHPEICGFISEAIYDGRLRAAPATA
AHRLLLDEAAGRELPAHGIRYVPVPHDGNTQSSREEAARVAELCALLLRQRHVDEAGAPAPLTLDDILFVAPYNVQVNTL
RAALPDGARVGTVDKFQGQEAQVVIVSMATSSGDYLPRDLEFLFSRNRLNVAISRARTLAILVASPALTAVRCRSAEQMA
LVNTLCWVAETGSASPYQV
>SEQF1086_CAE41638.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQDLNDLYYFVQTVDHRGFAPAGRALGMPKSKLSRRIAVLEERLGVRLIQRSTRHFSVTDIGQTYYEHCKAMLVEAEAAQ
EAIDAAQVEPRGVVRLSCPVALLHTHVGAMLGEFMLRYPRVTLHLDASNRRVDVLGEGVDVAIRVRPPPLENSDLVMRPF
ADRGQCLVASPALLARHGAPALPADLAAWPRLALGLPNQPHSWLLTGPQGAQATVPLAPRMVTTDMLALRSAAVAGVGVV
QLPSMMVRGQLADGTLVRLLPEWAPCRELIHAVFPSRRGLLSSVRTLVDFLAERFAALQEG
>SEQF1086_CAE41639.1 putative reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARLHIIICSTRPGRVGPAVADWFHAQALAHGGFEVALVDLAQVGLPLYDEPRHPMLQQYEHAHTRAWSRSVASADAFVF
VTPEYNYGPPPALVNALNYVYKEWNYKPAAFVSYGGVSGGMRAVQAEKQTLTTLRMVPIFEYVAIPMVAERLDAAGRFQP
QPIHDSMAQGLLTELRRFSDALQVLREPASTP
>SEQF1086_CAE41640.1 putative citrate lyase beta chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIPDPATAPSMNPTQTTNPMRPFRSVLYTPGANARALARARELDADALILDLEDAVAVSAKEEARVQVTHALREGGFGRR
SVIVRVNGLDTPWGEDDVRALAPLGPHAMLLPKVEHPAQLARAAALAAEAGAPGLAWWAMIETPLAILNIGAIAAAGAPL
RALVAGTSDLVKALHARHTPARAEVQAALSMTVLAARAHGLLALDGVHLDLADAEGLRHACRQGRDLGFDGKTLIHPRQI
DSANAAFGPSEAEVVRAHAIMAAWQDAQAHGAGVTVVDGMLVEALHVEDAQRVLALAQAIAAD
>SEQF1086_CAE41641.1 putative GntR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTGTSKPNATSGSTLEYVVDTLRQGILSGRLVPGQRLVEADLTRQLGVSRGPVRESFRRLSAEGLVESIPNQTTMVRRYS
KAEMLELFEIRAELEALAARRAAECMDDPAAKARFLQAIGPIWDEHSLAAGPSYFDENRRFHQAIADLSANTQLAELIRK
LQLPLIMFQLGGAITPQAIQASIDEHRRIAQAIVDGNRRKAAAEVKAHLKRACEMVERMPPDIFRP
>SEQF1086_CAE41642.1 putative acetyl-CoA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAVQRIGKLLNPSSIAIVGASPAPNKLAGQLIPALREGGYEGAIYPVNPRYQEVAGLRCFASVGDIPDEVDHCVIVVGK
ERVPQVLRDCCAKQVPGASIYISGYAEASGDGREAQRALEEAASALTFIGPNCMGFSNLTARVMAAPSAVLKRAEGVGDV
ALVSQSGGLAYATMAYYAQRDGLGFSHIVNTGNSAGVSYSDLIEYMFQDPATRVVLAVAEAERAACEVIDAVHRLGLRKP
VVLLKLGRGQTGTRMALSHTGSLAGDYRLVRDVAEQHGIACADDVDQVLGLCELLRHGFGAEHAEGIASLCISGGNITLF
ADQADAHGLGFAELDAATEARLTAVLPDYISVHNPIDITALGYENPALHADVLDVLLTDAAVRTVVPILTTVDDYTEVCR
LLADVRARTRCAMIALWNGGSYETRSREILREAAIPVFHSAALLAACLQRLRRAAGRRAPMQAASAAPVADGALRALRES
EAMQWLAGHGVAVPPLRACARAGLAEAAREVGYPLVIKADSADTHISDQDSVILNIRNDGELAQALERVAGWPDERVLAM
RYLPGQELVAGVLAHPQLGQVLMVGSGGQWVELLKDVRFAALPASRDELADALAGTLVGRALHARFRGAAGFDEAVGLLA
ALAEAAVRAGPQVAQIELNPVTVGRHGAVAVDAAVYLRA
>SEQF1086_CAE41644.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNALTSDMGWSDARTIVVRGHDLNHEIIGHLNLGDFAFLEITGRKPDPQESTLFNALLAMLVEHGMTPTAMVARLTYLGA
PESMQAAIAAGLCGMGTKFVGTAEGAARLLQEALPLGSEQALDIDATAQRIVAEQRAARQMLPGIGHPVHKPVDPRTTAL
FALAERTGFHGRYVALMQALSAQAEKALGKPGVLPVNATGALAALASELGIAWQLCRGIAVIGRAVGLVGHIAEELRNPI
AERLWVRTDAEVSAHLKPAPQEPRP
>SEQF1086_CAE41645.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLLSHIRVLDLGRFITAPLAGQLLGELGADVVKVESRDAIDPFRAFEGGLYGPHFQSHNRNKRSLALEFATPEGQAALR
RLIAGADVVLLNMRPGAEHKLGLDYESLRALNPGLVYCSITGFGASGPYAHRPAFDNVGQALSGWLSMFHQGSDPRVPGP
PVSDSLTGLYAAMGVLAALLERARSGQGRKVEVSMLESLIAFSNEPLGQLSAKGARPAHYGRASLSQSYILTCADGLRIG
LHLSSPEKFWRSLVEAIERPDLLARFPDRASRVDGYEALARELAAVFAQRERADWMRVLEAHDVPAAPERLLDELADDAQ
VRHLEVFQQLRHPRHGPVTAANRAIRFDGDNHSAFAPPPAFGEHTLEVLVQAGFGAEDIERLHACGAIAATGHGAHA
>SEQF1086_CAE41646.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPNILQWALGAAFACVAAASTAQDYPARPVHLIVPYPPGGGTDVVARAVAQRLQAELGQPVVVESKPGASEIIGTGSVA
RAAPDGYTIGLVTSTYSINWVLDASLPYKPAQFAAVAPLVGVPMLALVPAGSPVQDMAGLVAASRQAPGRMNYASLGPNS
LQAMSTEWLKHLSGADLTAVAYKGAAPALVALSTGEVDFTFAGLGASRPMLDAGKVRALAISTAQAFPPMPTLPPVAQAA
PGYDVQIWYGLIAPAGVPPAILDRLNAALARVMDDAALRRQFSDLGYVPTVMDRKAFEQFLQRDTLQWREMIGAAGIRAQ
>SEQF1086_CAE41647.1 probable LacI-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAGIAARTNVTIKDIATRLKLSHATVSRALADHPKISAATKASVREAAQAMGYVPNGTAQNMRTAHSPVIGLIVPDIQND
FYAAVAKIVADAAVARGFQLALSITEDNPEREFNDLRAFVVSRAAGVIITPTIKPKPETIALLKGVRAIQLIRQHAAVAA
EAVVIDERAATRAAAEHLIHYGHRRIAYVGTTTDLSLGEDRLSGFSSAMSKAGLDASLTAVGPPRVEFAHRAVHGLMSGP
KPPTALIIGSSRLTVGALKALRGLGLSCPADVSVVGYGDPDWFELVGDGLTTVSPPVYPLGAYAINLLLARIQGEAVPAA
ADPAHATASRFPATLAIRGSTRPLAR
>SEQF1086_CAE41648.1 3-isopropylmalate dehydratase small subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQAFIRAHGIILPMNQDHVDTDAIIPQRWLVTVERDGLADGFMGAWRYDEHGQPRPECVLNQPAYQGAAIVLARENYGCG
SSREHAVWAHQGYGIRAIVAASYGPIFHENCLKNGLLPVTLPAADVATLMAQALADPGCACEVDLVSQRVIGPDGRAYPF
EIDAGRRQLLLEGVDDIDLALARAADIAAFQRRQQQDQPWLA
>SEQF1086_CAE41650.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNSIKRVRGKTAALFAALGLWAAAVPAAGAATPYPERPIRLIVPFGAGGTTDILGRVLGQQLGEALKQTVIVENRPGANG
NIGSDAVAKAAPDGYTLLFAADATLVINPTLYSQLPFKPESDFAPISRIAVVPLVLVANPAVKADTLPELVKLGGKPDAR
LDFGSAGAGSMGHLVGERLNRATGMSMTHIPYKSGAQAISDVVSGQIPLLITGLAVAEPFLRDGKLKAIAVTSGQRFPGA
PKVPTIAEGGVKDFDSPSWYGLLAPAGTPAPVLEKIHAALASALQTEDMKKCMVELGAWPVVDTQAAFAELIKADTQRWS
QIIQAAGITVQ
>SEQF1086_CAE41651.1 putative mandelate racemase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRITAIREIAVPLQGNISNSLVSFAEHTVSLVALVSDVVRDGRPLIGYAFDSIGRYAQPGLMRERFIPRLLQAAPHELLD
DGGQAFDPARASAIMLRNEKPGGHGDRAAAVGALELAFWDLNAKLRDEPAYCTIARHVGRPAQAGATQVYAAGGYYYDSG
DPLQRLRDEFRGYLDQGFVKFKMKIGGASLADDLARIEAALGVAGEGANLAVDANGRFDLDTALAYARALEPYGLRWYEE
IGDPLDYHLNSLVAQAYAGTIATGENLFSLPDVRNLLHFAGVRPGRDILQMDPGLSYGLTEYLRMMAAVEAAGFGRSCLH
PHGGHLINLHIAAGLGLGGCEAYPGVFQPFGGYPAACALGAGQVRPTDAPGFGLEQKQELAPYISVLAHGKA
>SEQF1086_CAE41652.1 putative ketopantoate reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKIAIMGCGAMGSVYAGLLAANGHEVIAVDRWAEHVQAMSEQGLRVEGASGDRVARLRAYREAPAEPVDLIIIAVKAAQA
GSAAAQARAMLGPDTLVLTIQNGLGSADSVAEAIGAERLAVGIAAAFGASLSGPGHVHHNGMSAVRMGAYAGLGAEKLDG
IAEVWRGAGFNAQAVDNLPAMQWEKLICNVAYSAPCTLTGLTIGEVLDAPHASAVSQAAATEAWNVARALGVPVAVEDPV
AHVRAFGERIRGAKPSVMLDHEQRRVSEIDYINGAIPRQAARAGIQAPVNQTLTALVKQREEAWK
>SEQF1086_CAE41653.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR
>SEQF1086_CAE41654.1 putative amino-acid ABC transporter, ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIGLQGIDKSFGGNRVLHGVDVVIPEGSVTALIGPSGSGKSTLLRCVNLLEIPEAGVLRLGPETLAFDGRRPARDAVQRI
RRQTGMVFQNFQLFPHQSVIDNVMEGLVTVQRWDKPRARARAMELLEKVGMTAKADAWPVTLSGGQQQRVAIARALAPSP
RVLLCDEPTSALDPSLAIEVVDVLRRLAGEGMTMLMATHDLRLAASIAQQVVFLEGGAVVEAGTPREVFAQSRDARTAAF
VSTLTQGLPEEWSAPA
>SEQF1086_CAE41655.1 putative amino-acid ABC transporter, permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPAWLQLMLDSFWPLLHAGLMFTVPLTLLSFAAGLALAFVVALLRLFGPWPIVALMRFYVWLIRGTPLLVQLFVIFYGLP
SVGIVLDPLPAALIGFTLNVGAYNSEVIRGAIESIPRGQWEAAYSLSMTRGQAMRRTVLPQAARVAVPPLANSFIALVKD
TSLAAVLTVPEIFQAAQRIAAVTYEPLILYTEAALIYLVFSSALSSLQVRLEKRFGQHAVFAEQHR
>SEQF1086_CAE41656.1 putative amino-acid ABC transporter, periplasmic amino acid-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNFSLRKLLLAGLVPLAMIGTAVQADDLAAIKAAGVIKIGTEGTYAPFSYHDASNKLTGFDVEIGRAIAQKLGVKAEFVE
GKWDGLIAGLDVKRYDAVINQVGITDARKAKYDFSDPYISSQAALIVREDNQAIKSFADLKGRKSANTLTSNFGKLAQSY
GAEVVPVQGFNEAIDLLMSGRVEATVNDNLSFLDFKKQKPNAKVKVAAYDKSKEFSESGVLIRKNNPELQAAINKALAEL
KADGTYRKISEQYFGADLSAAQ
>SEQF1086_CAE41657.1 transposase for IS1663 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKAVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF1086_CAE41658.1 flagellar biosynthetic protein FlhB [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAEESDLEKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVAGVWLSGSMLYQGLTGVLRRGLGFEPRVAQDPGVMVE
QAVHGAGRALLTVLPMFGMLAVVAVLSAVLLGGFVFSTKPLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVA
VWVIWHYHDDMLGLMHVAPSAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRMTKEDVRQEHKEGEGDPHV
KGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYADGAAGAPRVVAKGTGLIAARIRELAAEHRIPTLEAPPLAR
ALHQHVELGQEIPTALYTAVAEVLAWVFQLRSWRPGLGREPQAPTALVVPAELDPHSPTAAQGA
>SEQF1086_CAE41661.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNSAALKSCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLSGAGLASGPAGTDAA
AAAHPELGPLWQALQANAAQAREHNQRNGTLIAVNLRHTQESLDALRQAAGTGAAATYDAQGRGKRGYSSAASGRAIVAT
>SEQF1086_CAE41662.1 negative regulator of flagellin synthesis [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKIQSSTSHPVGPNAVGARAEHAVAQAYGSGAQAGSGSAQVALSPASRQLLAQEGGSDIDVERVAAIRAAIASGQLRIDP
TRIADSLIASARDLLK
>SEQF1086_CAE41663.1 flagella basal body P-ring formation protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKSPRSRSIARLAALAILAGAMPRAAAEPPAQDPAELAAAAESYLRQQLAALPGEPSITLDPLRSDRLDACEALTPFMPS
GMRVRARMTVGLRCVAPRTWTVYAQATVSVPGQYYVAARQIAPGKTIEAADLTTRDGDLVALPPGVITDAAAILGMRPAH
RIAAGQPIKGAGLRSAESVSRGQSVRITARGNGFVVSSEGQALDNAPPGATVQVRTASGQVVSGIVQAAGLVEIQL
>SEQF1086_CAE41664.1 flagellar basal-body rod protein FlgB [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLDRLNEDFRFFQQSIALRAQRQEVLSSNIANADTPNYKARDFDFKAAMQGALEQRMRLPDTNLALISARHIPGQATTPS
PAELMYRLPYQPSLDGNTVDMDSERVRFADNTLHYQSSLQVLSGRIRSLMSAIQE
>SEQF1086_CAE41665.1 flagellar basal-body rod protein FlgC [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLLSIFEIAGSALSAQSQRMNVSASNMANADSVAGPDGQPYRARQVVFQVNPPAGQAFGQEIGGVRVAGVVEDQSPFKK
IYDPKHPMADAQGYVNMPNVDPVAETVNMIAASRSYQANVEVLNTAKQLMLKTLTIGQS
>SEQF1086_CAE41666.1 basal-body rod modification protein FlgD [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTVNETTSQAGLALAQAGSNSAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAISGQI
DVSQSMDAVSMIGKGVLMPGDKVSLGADPNDPAQRGATPFGIDLQGDATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQW
DGNNDGGQPLADGKYSITVSASDADANPVKTEALTYGQVKSVAYSTNGLRLDLGLAGQISMLDVRKVIGASGSA
>SEQF1086_CAE41667.1 flagellar hook protein FlgE [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRVGLGVKVSAINQRFTVGNISTTGGEYDMAIDGG
KGFFRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGFRLTGYPAGGVGAQPVDLQLPQGNIAPQATSTAGLQTNLNANAKVI
DPNDTPPEDGLVELDGTTYRFTNAGGTFAWVAPAPLDGTYNGGDIVIAGGAVTGDLTSQPGYQPYKPLVAGIPFDPTNPL
SYTDQVPTTVYDSLGNSHQMIQYFAKRPAVGTESVYEVYYVLDGQAMQVNGGASQTLNFDTAGNLLNQPPTAQVTFANPG
GNAAPADPLEITVSYNGVTQYGSDFAPKVVQNGYSSGEFMGLSVGKDGSLVAKYTNGETQTIGTLVLANFNNVQGLQPVG
NNAWVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQRTYQANAQTIKTQDEVMQVLMNMR
>SEQF1086_CAE41668.1 flagellar basal-body rod protein FlgF [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDRIIYTAMNGAARIAEHQTVLGNNMANVNTPGFREQIALYRSVPMADGTSLPTRVSTVASTPGNNFEMGNMMTTGRELD
VALAGPGWFALQTPQGEAYTRAGALQVGVNGLLQTATGQPVLSDQNAVIEVPDQASLTIASDGTVTAIGAGDPPNNILNL
GRLKMVNPPPQQLVHGDDGVFRMPPQPGGQPAAPLPADPSQRLLSGVLEGSNASPMGAMVGMIQNARRFEMQMQVIREAD
KNAERANGILAAAS
>SEQF1086_CAE41669.1 flagellar basal-body rod protein FlgG [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMRSLWVAKTGLEGQQTSMDVISNNLANVQTNGFKWGRAVFQDLMYQTLRQPGAQVGDANQLPSGLQLGMGVQVAATQRV
FSQGNMNNTGGEMDIAIQGRGFLQVELPDGTQAYTRDGSLQVDQNGQLTTAGGYVIQPPINVPDNALSLTIGKDGTVSVT
QPGAAGTNVQIGQLQVATFINPTGLQSVGENLYLETDSSGPANLLQPGIDGAGQILQQYVETSNVNVAEELVNMITTQRA
YEMNSKAVKTSDEMLARLTQL
>SEQF1086_CAE41670.1 flagellar L-ring protein precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLKTVLRLPVCAALLALAAGCAMIPPEPVVICPLTAPPPSPPQPSARPNGSIYQPSAYGNYPLFEDRRPRNVGDIVTIVL
EEKTNAAKGVATNTSRDGSATLGVAAAPRFMDGIINDKLDTDISGGNTANGTGKSSANNTFTGTITTTVIGVLPNGNLQI
AGEKQIAINRGSEYVRFSGVVDPRSITGSNTVSSTRVADARIEYRSKGVMDEVQTMGWLQRFFLIASPF
>SEQF1086_CAE41671.1 flagellar P-ring protein precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTFPTSLSVLLIPLARAVLALELLGAGAAHAERLKDLASIQGVRGNQLIGYGLVVGLDGSGDQVRQTLFTQQSLTNMLSQ
LGITVPQGSNMQLKNVAAVMVTATLPSFARPGQTVDVVVSSMGNAKSLRGGTLLMTPLKGADNQVYVIAQGNLLVGGAGA
SAGGSSVQINQLNGGRISNGAIVERAVPTMYAQDGMVYLEMNNTDFGTTQNAATAINRQFGAGTAMALDGRVIQVRGPLD
PSMMPAFMSQVENLQVARAPATAKVIINARTGSVVMNRTVMIEEAAVAHGNLSVIINRQNQVFQPDTPFTEGQTVVVPNT
QIEVRQDGGALQRVTTSANLADVVKALNALGATPQDLLAILQAMKTAGALRADLEII
>SEQF1086_CAE41672.1 peptidoglycan hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSFVSYTSRPGVQESVFDLGRLADLKRDAVKAPDGQRQQTEVARQFEALFLQMMLKRMREATPKEGLFDSQQTEMLQGMA
DEQLALQLASPDIGLAQALLGQMQQGQPPVPAAAAAGGDAAAARALAGTAAPAPLVRDLRGNYVQPDPAPRREVNALLDV
LRSNRARDRAMAAAEGAPSHVVDFVSRMSRAANVAAQQSGVPARLILGQAALESGWGRRELRHEDGSTSYNLFGIKAGAS
WKGKVVNVMTTEYVDGVAQKLVQSFRAYSSYEESFSDYARLIGNSPRYEAAVTQAGNEIEAARRIQEAGYATDPRYAEKL
ISIMGQLRTSVARADFSGGL
>SEQF1086_CAE41673.1 flagellar hook-associated protein 1 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNLYNLALTGLNASQAGLETTSHNINNATTVGYSRQRVITSTAGAGETGQGFFGRGVQVDTVTRQYDSFLYRQLVGAQGS
SAQLSTHLAQVSQVNNLFGDRTVGITPALAGLFTSTNAAATKPADPAVRADMIGKANSLVTQINTAYQELENQRNGLNTQ
ISTTVEQANSYLERINDLNKKIVIARGKDGHAPNDLLDQRDQAVSELNQLTGIRFYEQGDAFNITLQSGQTLLSGTTVYP
LQAVPSASDPKRLTVAYTLPSGPGTTIQVEMNDSEVTGGQLGGLLSFRSQSLDAVQDQLGQLAIGLAMAFNAQHRQGYDL
DGQPGGDMFGLQAPAAIRNSGNTSTGEWQSAYTDADAIRASAYRIQYDGANYTVTRLSDGSSFDVTPSGTPPTLSFDGLT
LTGSGTPAAGDAWTLQPARDAARDLKQLISDPSKLALADSALGTTNGNNGLKLAELQTAKVLGNGSMSLNEMFSQLVNNV
GVQTQQVSTANTAQANLVKQQATAHLSVSGVNLNEEYVNLTIFQEQYQASAKILDVASTVFDTLLGLR
>SEQF1086_CAE41674.1 flagellar hook-associated protein 3 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRLSTALIYQNGLNGVLNQEAAMARLQEQLSSGRRVLTPADDPLAAALAINVSQTSSMNSNYDANRKQAEQALGAQTNTL
QSVVKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELVGLANATDGNGQYLFSGYKGFTQPYSFDAATGKVTYNGD
LGQRGIQVDQSRLMSGGDVGSDIFNSVTSGTLAYIADAGAGNTGTGQYSAVSFDGPRAGNYVGRDFRIEFTRDAVTDELQ
YSVLSDPPVVPPEQPLPANMPYSEGSVIDMNGVSIKLSGQPEAGDVFTVETPKSWKMGVQGDAANTGSATLTPVSLPDGL
TGKNLSVAFLDDGAGGLLYSVTSTPPDPSLPANVPVKPGDVIDIGGLKVKVDGQPAAGDTYAVTTPKSANVDVFDTLNDL
IGALDTPISGDPQAAAALANTLATANKKLNLSLDNVLTVQASVGARLNELEALGNTGAQKVLSYVKQLSDLEDVNIYQAT
SDLLLRQVALQAASLALQRIQGNSLFSMGR
>SEQF1086_CAE41675.1 methyl-accepting chemotaxis protein I [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MWSNLKVRTCITLVLGLFLVAMLVSNGMAWLGMSSSNDKLERVNNAYSNQAVPAYDAYVMLLRARLNIVSSMMDLQEGRL
KESADTLAHAQRQAGEARERFEAFLAVAKASSGADRVGAVETAFHAYLEVAARQMEAMQNQRLGEFVQLNPSAQRLNTAF
DTAASAYLDRIDTDTDALVDDARAEHLRANTVTLVLIVLALALCAGCGVFIGRAVLRPLKEAGQHFDRIAAGDLTARVDV
RNSNEIGQLFAGLKRMEESLTRTVAAVRRGVDEINVGSREISAGNTDLSSHTEEQAASLEETAASMEQLASTVKQNADNA
RQANQLAGVASDVAERGGSAVSEVVTTMQDISASSRKISEIVSVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEV
RSLAQRSAQAAKEIKVLIEDSVGKVGTGSQQVERVGATMQEIVASVKRVTDIMGEISAASEEQSSGIEQVNRAVSQMDEA
TQQNAALVEEAAAAAGSLQEQAQRLAEAVSVFRINAGEVIDVSARQLAQQRQAPRVAAAPASAAAPEAPPEPAPRLARPA
ARADVAAEAASVRRPARRPAATEPAARTTAAPSRRRPPADNDWESF
>SEQF1086_CAE41676.1 methyl-accepting chemotaxis protein II [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFANLKVRTGLLLALVALALAALVSIALGWESVREGSRSLHALDSVSVQQGSLLKDAYAQMLRATIRADIAAVQRRGDAA
GTLENERTVKQLMGEAKARIEAFRKVPKLSELGRSMETGLTSSFGSFAASLDEMMAALERNDDAAYLQLKNVKAGQASAA
FAARLGEFSTNLDKLSSETLAAHETRETIMLYVYAALLLLIVGVIAGSYLYMTRAVVRPLQRASQQFERMAAGDLSARIE
GNSRNEIGALLTALRHMQESLTRTVAAVRRGVDEINVGSREISAGNTDLSSRTEEQAASLEETAASMEQLASTVKQNADN
ARQANQLAASASDVAESGGSAVSEVVSTMDGISASSRKISEIVSVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGE
VRSLAQRSAQAAKEIKVLIEDSVDKVGTGSQQVERAGATMQEIVASVKRVTDIMGEISAASEEQSSGIEQVNRAVSQMDE
VTQQNAALVEEAAAAAGSLQEQAQRLAEAVSVFKINTGEVIEVPAHQLSGYAAPLVAQS
>SEQF1086_CAE41678.1 transposase for IS1663 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF1086_CAE41679.1 flagellar biosynthetic protein FliR [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIAFTMEQLNGWLAQFLWPFVRILALVGAAPLFSESTIPTRVKIGLAFMLTIAVAPAIGPMPAVPPSSYAGLFLLSQQVL
IGIALGLSMRVVFAAVQTAGEFVGLQMGLSFASFFDPATGANTAVLSRLFNIVAMLVFLALDGHLLVLGALVRSFDTLPV
AVGVLDRNGWGILAEWGTTIFVSGLLLALPLICALLTINLAMGILNRAAPQLSVFAIGFPVSLIVGLVLLAIVLPHSGPF
LERLFEQGLNTMNNVANGLAGK
>SEQF1086_CAE41680.1 flagellar biosynthetic protein FliQ [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAETVMSMTYQALKVALALAGPLLLVTLIVGLVISIFQAATQINEMTLSFIPKLLAMCGTLVLLGPWLLGLLTDYIRQL
IGQIPMLVS
>SEQF1086_CAE41681.1 flagellar biosynthetic protein FliP [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAVAVAAAALWPSGALAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVLGLLRSAMGTA
MSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYQPLAAGSIPFETAVERAGAPLHNFMLHQTRENDLTLFANLANLPAMED
PSQVPMRILIPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWHLLLGSLAQ
SFYQ
>SEQF1086_CAE41682.1 flagellar protein FliO [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTESAVLRVVIGLALVIAAILVSAWLARRSGLIQRHGGALLRQVGGMSLGPRQRVVVLEIEGTWLVLGVTPNQLTTLHTL
PAGQLPDPSPAAAGTFAAKLGQALQRGHRVDRP
>SEQF1086_CAE41683.1 flagellar motor switch protein FliN [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDTNERPDQTGAGAPAPAADDWADALAEQNRAAAPTQADGLKPQDDWADALAEQNAAPAAAAQSVFKPLATKETGQGTD
IDLIMDVPVQMTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVVDDKYGIRLTDIITPSERIN
RLNSRR
>SEQF1086_CAE41684.1 flagellar motor switch protein FliM [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAYEAFLSQDEVDALLAGVTGESDEKQPAGDEAGAPRAYDLSSPERVVRRRMQTLELINERFARHMRNVLLNFMRRNADI
TVGAIKILKYADFERNLPVPSNLNMIQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLN
LTLESYGKSWDPVYPIEFEYVRSEMHTKFASITGNNEVVVVSPFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQDTAL
EEVDQRWAQQLQRQVRSADIDLVAEFGHIPSSIGELMRMKTGDVLPIAVPETVTAHVDGVPLMECGYGVFNGRYALRVQN
LINYDDTDSNEAPDHD
>SEQF1086_CAE41685.1 flagellar protein FliL [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPPRTTLPLRPGGAGRLLRPLLMLLVLALVVAASVAGTWYFMKRMQPPVAVPVQLGVGQPQATPMQFVAPPATPPVVPAP
IFIPLEAFTVTLQNADSERILHVGITLRVSDEQTRQRIEKYMPEVRSRILMVLSSQSPQAVQTLQGKTEMAHAITEAVKR
PFSPLPDGQYVTDALFTAFVVQ
>SEQF1086_CAE41687.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41688.1 flagellar protein FliJ [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPSQLPLDMLIGLAKDSTDEAARELGRLSAERNNAEQQLNMLQDYRQDYLQRMQTAMQSGMSAADCHNYQRFIATLDDAI
GQQRHVLHRAEAHLNDGRLNWQQQKRKLNSFDTLAQRESRTQALLEARREQRVNDEYSARLVRRQAGF
>SEQF1086_CAE41689.1 flagellum-specific ATP synthase FliI [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPVADRWQTQLQIGSIRAASTEPWLVSGRITRAAGLVLHTTGLRLPVGAACRIELARGHDHWADAEVVGFDGHTLYLMPQ
SDISGLPPGARVVPAEPAVQRPVPLPRKAELNGNAKPQVGRHLPVGNAMLGRVVDGAGRPLDGLGPLAGAEQAPLTALPI
NPLSRAPIDSVLDVGVRAINGLLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADIIVVGLIGERGREVKEFIEHNLGPE
GLARSVVVAAPADVSPLLRLQGASYATRLAEHFRDQGLDVLLIMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPA
LVERTGMGAPGPNGKAGSITAFYTVLAEGDDQQDPIADSARAILDGHVVLSRHLAEAGHYPAIDIEASISRAMTSLITTE
QFQQVRRFKQILSRYQRNRDLISVGAYVAGADPQLDDAIARYPRLEAYLQQNIGDSVDYGTAIDQLQRSLETREAYA
>SEQF1086_CAE41690.1 flagellar assembly protein FliH [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSEALAREPVALPRSAAWRRWQMLSFDEPAEAETPEPAALEPEPEPAPDPEELLREWRATAERAGHAAGHQAGQEQGQRE
GYAAGHAQGLAAGRAEGHAEGLAQGREDARQQAERLHALAQACAASVARLEDNMGQSLLTLALDIAGQVLRTTLAEHPEA
MVAAVREVLQINPATGAAMRLWVHPDDLELVRTHLADELNEANWRLQADESITRGGCRTETAYGDVDATLQTRWRRVAAS
LGRSAAWEETA
>SEQF1086_CAE41691.1 flagellar motor switch protein FliG [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKNDGKPLDGMTRSAVLMMSLGEDAAAEVFKYLSAREVQQVGAAMASLKQVTRGDVAVVLEEFRQEADQFMAVTLGSDDY
IRTVLTKALGSDRAAGLIEDILEAGEGGSGIDALNWLDPHTVAELIGDEHPQIIATILVHLERDRAASVLAMLSERMRND
VMLRIATFGGVQPAALSELTDVLNSVLAGQGAKRSKMGGVRTAAEILNMMNSSQEEAVVESLRERDSDLAQKIIDEMFVF
DNLLDVEDRAIQLILKEIDNDTLMVALKGAGDELRNKFLRNMSSRAAEMLREDLEAQGPIRMSKVEGEQKKILQIARRLA
ESGQIVLGTQGDDAYV
>SEQF1086_CAE41692.1 flagellar M-ring protein FliF [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNQQATLSASLMARFPVLEKLRALPKPVLLGAAAALIAVVAAVAMWSREPDYKVLFSNLDDRDGGAIVSALDQMNVPYRF
SDNGSALLVPAERVYDTRMQLASQGLPRGGSVGFELLDNTRFGASQFAEQINYQRGLEGELARSIEAMHTVQHARVHLAM
PRQSLFVRDRQAPTASVLLNLYPGRSLSDAQVSAVAWLVASSVPELTAENVSIVDQNGRLLSAPLGEGRGMDADQLRFVR
EMEQRTVERILTILNPLVGPGNVHAQASAEIDFARREETSEVYRPNQEPGQAAVRSQQTSDSRQTGPNAAQGVPGALSNQ
PPANAQAPIVNPPAVAGTPQQQQQQRAQQQAAGATTTQTQQGAAAPSNDRHDATINYEVDRTISHVKQPVGMLKRLSVAV
VVNYLPNKEGESEALPPEELNKLTNLVREAMGYSEARGDSLNLVNSQFNDTPVAVPLWRDPELIAMIKTALGWLFGLILA
FWLYRKIRPVVTDYFYPQVDPEVAAAQRQEAEREAQAAARTREVNRYEDNLQLARDMAGKDPRAVAMVLRSWMSKDEK
>SEQF1086_CAE41693.1 flagellar hook-basal body complex protein FliE [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAVSGLSGIESMLSQMRAVVRAAQSGGATEAELAPGPSGFAAELQRSIRSVSQAQNAASDQAKAFELGAPGISLNDVMID
LQKASLGFQTSVQVRNRLVAAYKEISSMAV
>SEQF1086_CAE41694.1 hypothetical protein BP1405 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAQDQIVVLTQSDQIRSTLQERRHPDCQIVISGIDQRPWPVRILGPDAKDGYFFWRPLDQACPDPVMLARMADEDEPPL
AFHAQTADGARIHFCVDSPVTLRFGDGSIAVLSLFPSAVRHTCARPPQAPA
>SEQF1086_CAE41695.1 putative flagellar protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTPAPPTPATADADPNRPVAVALSYDGGEAAPRVVAKGYGQLADTIVRTAREHGLHVHESRELVGLLMQVDLDAHIPPQ
LYTAVAELLAWLYRLEARELPEALAPRA
>SEQF1086_CAE41697.1 flagellar protein FliT [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTALTQHAPVLEIYQDIANLTSRMLAAANASNWDLVLNHGQEYVCLVERLRELEPGEPLDEAARGMKFDLLVRILENDAA
VRDLALPQLARLSDLLGRMKRQQSLLATYSGKANGT
>SEQF1086_CAE41698.1 flagellar protein FliS [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTYAARRPTGSYSVKSYSDIGLETQVMSATPERLITLLYAGARAAIAQARLHLEAGRIVERGQAIGKAIRIVDEGLKLGL
NQNAGGEVAANLARLYDYITRTLLTANLKADKEQLDIADRLLADLSEAWQASVDHPAPAVPA
>SEQF1086_CAE41699.1 flagellar hook-associated protein 2 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATISSLGSSGLELEGILEKLQAAEEKKLTLITARQASYETRISAYSKIQAAVEAVQKAAATLGSIDTLSAVKAVVSGDG
LSVKTAAGAVPGQYTVNIDKLATAQNLQSGQLDSRTDKHGTGGSIEIVQKDGTTTTVTLGEDTSLNGIVKAINGTDGLDV
RATVISDGNGKHYLMLNNKTEGTETAVTRITVSGNQEVADILDFDAANAGASNLTVQLAAQKAELTINGIPVVSDTNTVE
TAIDGLTLTLTKQSAAPLTVTVSSDPSVAATAVNDFVKAYNGLQTTIADLTAFDVKAEKQSALTGDGTTRNIQSAIAAAL
RVATGEGTLRTLSQLGITTDPKTGSLKTDTEKLEAALRDNPADVARIFSGPFGLGEKVKLATEQILGDEGSIKIRQEGLE
ETLESLQNQYDRQKLSIAATIEAYRKQFVQLDVFVTQMNNTSNYLSQQFAALSGTKK
>SEQF1086_CAE41700.1 putative flagellar protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAVSPINAAAPALVSVAPAPVPAQPAAAVAPAAAAANGGGAQSATQDQYGAPKLPMDRALEEINAQLKAWSTQLQFEIDP
DVHQVVVSIVDAETGDVLRTIPSEAVIRIAKMIVKMQGNAVETTA
>SEQF1086_CAE41701.1 FolC bifunctional protein [includes: folylpolyglutamate synthase and dihydrofolate synthase] [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTSRPDASADLPAWLQYLESIHAKAIDLGLDRVRQVAGRLDLSLDGVNFVVGGTNGKGSTCAMLESILLAAGYRVGLYT
SPHLIDFNERARINGEIASDAALVQQFEAVEAARGDVSLTYFEFTTLAILRLFAQSRLDAVGLEVGLGGRLDAVNIVDAD
CSIITSIDLDHTDWLGDTREKIGFEKAHIYRAGRPAICADPVPPQSLLDHVQAIGADLWLLGRDYNYSGDRQQWAYGGRA
QRRNALAYPALRGANQLLNAAAALAALEAVRDRLPVPQQAVRLGLLQASLPGRFQILPGQPTVILDVAHNPHAAAVLAQN
LDNMGFHPYTHAVFGMLADKNVDGVIARLGSRVDHWYCAGLPGPRGLDGQALAGHVRQVLPEAEGAAETPTVQACADPAA
AYAAAREKAGEGDRIIVFGSFLTVASVLQALGRKI
>SEQF1086_CAE41702.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVLAAVIVLPMILDSEPVPVDSDIPIRVPDRNSAFQPTVNDPQAAAPQPEQPAPQAPAGTPEAGAPQPPALASAPPQTPP
PGQTPAQPQTPPAAQPPATPPQQAATPPAAPKPEAKPEPKPAKPAAPARSDDGARAMALLEGRSPPPAQSKPAANGNFVL
QVASYTTQADAQARRGKLHQAGVTNAFVEQASINGKQQYRLRVGPFPSREAAQAAQARLRTLGYDNGFIAAQ
>SEQF1086_CAE41703.1 colicin V production protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTGFDFVVLTILAVSAVLGLVRGLLKEILSLLAYLLAFVAAIWWGPTVYVWLEPYIETALLRMGIAYAVVFIIVLLAVGL
VNMTLAALIRTTGLTPADHGLGAMFGLARGLVLVLVLVALAGFTPLPQEDWWRDAMFSHSATEAVRQVKSWLPPSLATWL
PY
>SEQF1086_CAE41704.1 amidophosphoribosyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MCGIVGVIGRGPVNQLLYDSLLLLQHRGQDAAGIATLQGNHFNMYKAHGLVRDVFRTRNMRALPGTSGVGQVRYPTAGSS
ASEEEAQPFYVNAPFGIMFAHNGNLTNWRELRESLYRVDRRHINTNSDSEVLLNVLAHELQSAASGVSLDDDTIFRAVSA
VHQRVKGAYAVVAQISGYGMLAFRDPHGIRPLCIGRQETEEGVEWMAASESVALEGSGFAFVRDVEPGEAIFVDLDGRMT
SRQCADNAQLVPCIFEYVYFARPDSLIDGVSVYDARLRMGEYLADKVARSMRLGDIDVVMPIPDSSRPAAMQLAHRLGLD
YREGLIKNRYVGRTFIMPGQAVRRKSVRQKLNAIGMEFKGKNVLLVDDSIVRGTTSREIVDMARAAGANKVYFASAAPPV
RFPNVYGIDMPTQKELIATGRTDDEIARTIGADALIYQDLQDMQQAVRDINPRLSRFEASCFDGEYVTGDITAEYLARLG
QSRDSSAGDEEAGGLQFNMGYAANDA
>SEQF1086_CAE41705.1 disulfide bond formation protein B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRYRERLLFLIAILCFGAVGLALLSQHVFDMPPCAWCVLQRLIYLCIGVVALAGALAGAIAARLAAMLAALLAICGIVA
AWYQYSVAAKMLSCDQTFADRFMSATGLDGALPWLFGIYATCMDATVAVLGIEYAIWSLALFVIVLALALPAALRRNA
>SEQF1086_CAE41707.1 [protein-PII] uridylyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPHVDLNPLKQRMQAARAAAVAQFRQHPRPDMLLTELRRIVDQALRELVKLCPLPAGATLAAVGSYGRGELYPHSDVDLL
ILLPQPPSAADARAVEALVAALWDLGLEPGHSVRTLEDCEREARGDITVETALLESRWLAGSRTLMKRLDSAMQARLDAA
VFFQAKRVEMQQRHAHYQDTPYALEPNCKESPGGLRDLQVILWMARAAGFGHSWREVAQAGLLTSSEARDLRRAEQAFKR
LRIELHLLTGRREDRVLFDLQPGLAAVYGIASTATRRASELLMQRYYWAARLVTQLNVILVQNIEERLFPRPDSDARLID
DDFRNLRERLDIVREDGFERNPTLLLRAFLVMQQHPELIGMSARTLRAIWHSRHRIDAQFRRNPVNRKLFLQILQQPRGI
VHELRRMTMLNILPRYLPVFRRIVGQMQHDLFHVYTVDQHTLAVVRNLRRFTMPEHAQEYPLASQLIAGLDRHWLLYVAA
LFHDIAKGRGGDHSELGAREVRRFAQDHGLDPTDAELVEFLVRHHLLMSAVAQKRDLSDPQVVRDFAAQVGDERRLAALY
LLTVADIRGTSPRVWNAWKGKLLEDLFRLTLAALGGAHADAHTVLTERKDEAARLTRLAGLRDDAREAFWNQLDIAYFLR
HDASEIAWHTRHLYYQVAPDEPVVRVRPTEHGEGLQVMVYTRDAPDLFVTTCGYFDAKSLSVQDARVHTTRHGWALDSFI
VLAPEGFADLRAQATLVEHELAERLRDPHAARHAHAPRRLPHSHARRSRVFPVMPQAELSPDERSQSWRLSVTATDRPGL
LYALARVFAEHGVDLIMAKIMTLGERVEDVFIVSGSALERPRSQMQFERAILDALAGDEPRQQAA
>SEQF1086_CAE41708.1 methionine aminopeptidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGIVTDPADLAKMRAACQDAAKILDFITPYVKPGVTTGELDKLCLAYLTDELKVKSATIGYAPPGYPPFTGAICTSVNHQ
VCHGIPGDKVLKNGDSLNIDVTIIKDGWFGDTSRMYHVGEPSILSRRLTDITYDCMWKGIEQVRNGATLGDIGHAIQKYA
EAQGFSVVREFCGHGIGQRFHEDPQVLHYGKPGTGVKLVTGMLFTVEPMINAGRREIRQLADGWTVVTRDHSLSAQWEHT
VLVTDTGYEVLTVSPGMPAPPAFVTRPVEIPAL
>SEQF1086_CAE41709.1 30S ribosomal protein S2 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLMREMLEAGVHFGHQTRYWNPKMAPYIFGHRNKIHIINLEQTVAKYQEASKFVKQLVARGGNILFVGTKRAARELVAT
EAARCGMPYVDARWLGGMLTNFKTVKSSIKRLKDMEAMVADGGFERMTKKEGLLFQRELDKLNKSIGGIKDMNGLPDALF
VIDVGYHKIAVAEAKVLGIPVVAVVDTNHSPDGIDHVIPGNDDSARAIALYAKGMADAVLEGREQNINGLVEEIGEGQEE
FVEVQDNQA
>SEQF1086_CAE41710.1 elongation factor Ts [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAEITAALVKELREKTDAPMMECKKALTEAEGDLARAEEILRVKLGNKASKAAARVTAEGLIGLYIAADGKQGAVIEVNC
ETDFVAKNTDFIDFINKLAELVATQNPADVAALSALPFGEGTVETTRTALVGKIGENISVRRFERIQTPNSLASYVHGGK
IGVLVEFSGAEEVGKDLAMHIAATKPKALNADGVNAEDIAAERSVAEQKAAESGKPAEIVAKMVEGSVQKFLKEVTLLSQ
PFVKNDKQTIEQMLKEKGASITKFVLFVVGEGIEKKTADFASEVAAAAAGRA
>SEQF1086_CAE41711.1 uridylate kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSRSYKRVLLKLSGEALMGEDAFGINRSTIVRMTDEIAEVAALGVELAIVIGGGNIFRGVAPGAQGMDRATADYMGMMA
TIMNALALQDALKHKGVDTRVQSALNIDQVVEPYIRPKALRYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEIGAEIVLK
ATKVDGIYSADPNKDPTATRYARISFDEVIVRRLEVMDATAFALCRDQKLPIKVFSINKSGALKRAVSGEDEGTLVHV
>SEQF1086_CAE41712.1 ribosome recycling factor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSVADIRKSAETRMAKSLETLKASLAKIRTGRAHTGILDHVQVEYYGSPVPISQVANVNLVDARTISVQPYEKSMAGPIE
KAIRESDLGLNPVSMGETIRVPMPALTEERRRDLTKVVKSEGEDAKVAVRNLRREANEALKKLVKDKEISEDDERRAQDD
VQKLTDRAVGDIDKMIVQKEAEIMTV
>SEQF1086_CAE41713.1 undecaprenyl pyrophosphate synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALSSTQAIPETGDIPRHVAIIMDGNGRWATRRHLPRTAGHAKGVHAVRRVVEACGRRGVRYLTLFAFSSENWRRPADEV
SLLMRLFVQALEREVDKLQDQGVRLHVVGDLSAFEPKLQELIAQAQERTEHNDRLHLTVAANYGGRWDILQATRAMLRAD
PGLAQDPDRIDEARLAEHLSMAWAPEPDLFIRTGGEQRISNFLVWQLAYAEFYFTEQFWPDFGADELDAAFEWYRTRERR
FGRTSAQLRGGAKR
>SEQF1086_CAE41714.1 phosphatidate cytidylyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLGQRIITAAVLLAVLALTLALANPWWFVALLALGAACAAWEWLRLTVRQPLSGALCVGLAAALLAAMLAMAQAWIQGGV
SGLRLEVWVGYWLTPAVVAVWLLGAGTAVARGRADAPAASLGWTLFAIPAVLAAWSVLALMYLSRGGAYVVSLLALVWVA
DIAAYFAGRAFGKRKLAPRVSPGKTVAGAVAGVLGAVAWIALSSQWDGTYGQALVERWSWWLALPAAALLGVVSIVGDLF
ESLLKRRAGRKDSSALLPGHGGVYDRIDAILPVAPLALLMSGVLF
>SEQF1086_CAE41715.1 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRFQRVAVLGSTGSIGDSTLDVIARHPDRLGVYALSAYSRMDKLAAQAAACGAAVVVVPDDAAAARFRAAWRGKAAMPE
VRVGPRALAETAAAPECTTVMAAIVGAAGLPAALAAAQAGKRVLLANKEALVAAGSLFMAAVRENGAELLPIDSEHNAIF
QCMPQGARAAAPTAPAPGVRRLLLTASGGPFRRQDPADLHEVTPAQACAHPNWSMGRKISVDSATMLNKGLEVIEAHWLF
AMPSERIDVLIHPQSVVHSMVEYDDGSVLAQLGQPDMRTPIAYGLGFPERLASGVGLLDLTRWGRLDFEQPDLQRFPCLA
LSFAALRAGQPACVALNAANEVAVAAFLEGRLRYTWIARVIEAVLEWQAKQASVTLTSLDDVLDLDARARSFAGNLGLA
>SEQF1086_CAE41716.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLFTLLAFVVALGTLITFHELGHYWIARLCGVRVLRFSVGFGRVLARRTDRHGTEWAISAIPLGGYVKMQDDPPAGASAA
EAARSFNAQPVGRRIAIVAAGPLFNLFLAVVLYAGLNLAGTEVPAPVVGQPAAGTPAAQAGLMAGDRIEAVQGRAVDSWN
DARWRLLDVLSSQGEAQLEVRGPGGAARGLVLQVPGGNRLDPADGDPLAETGLRLAQPKPVVREVIAGGAGEQAGLRGGD
LIVAAGQAADLDAGALVALIQRHAGQPLALTVQRGADRLTLTVVPRAESVQGQEVGRIGVQLGGDIPMVTVRYGVIDSVW
RGVQRTWDTAWLSLRMMGRMVLGEVSWRNISGPVTIADYAGQTARIGLKAYIAYLALISISLGVLNLLPIPMLDGGHLLY
YLVEIVKGSPVSDRWIDIGQRAGIGLLAGLMGLALFNDFARLFT
>SEQF1086_CAE41717.1 probable surface antigen [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLRRMFHHKKGVIPGLLAAALLAPALAHAFEPFVVRDIRVEGIQRTDAGTVFGYLPVKVGEKFTDEEATEAVRRLYGTG
FFSDVQIQTDNNVVVVVVQERPTIASISFNGMREFDSKAITKSLAQVGFGEGRIFDQSMLERAEYELKEQYLAKGKYGVE
VTATVTPLPRNRVGVSFDVFEGEVAKIREIRVVGSKAFSEGELLDQFDLTTPGWLTWYTNTDKYSREKLEGDIERLRSFY
LDQGYLEFTVEPPQVTISPDRKDIYITITVHEGEPYKVREVKLAGNLMGLDSEINNLVEIKPGEVFSAAKANNSAKAITN
YLGDLGYAFANVNPNPQLDRAKHEADVTFYVDPSRRVYVRRIQIGGNTRTRDEVVRREMRQQEAAWYDAGDIKVSRDRVD
RLGYFNEVNVKTDPVPGSPDQVDVNVDVKEKPTGIINLGVGYGSSEKAILSAGISEDNVFGSGTNLTLQLNTSKTNRAVV
LSHTDPYFTKDGISRTTSAYYRVTEPWDNNDGDYRVKAMGLGMNFGVPISEYDRIFLGGTFERNQIDLYNNSPQAYRDFV
DQYGNSTNALIFNTGWSKDTRDSALAPTKGAYTRLKGDFSTMDLKYYLLTAQQQYYLPLGRSYTLALNGMIDYGRSYGGL
DYPVIKNVYAGGIGTVRGYEGASLGPRDRLTGDYIGGSRRMVANAQLYLPFPGASKDRTLRWFVFTDAGQVAAGSGMSCT
AGKPDSEVEDPCGWRFSAGIGLSWQSPLGPLQLSYARPLNSKSGDDTQAFQFQIGTGF
>SEQF1086_CAE41718.1 putative outer membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMSDFALNTSGSKRAKRGAGKLGVSLALAGALLFGSSAAVTAQAQGTKIGFVNTERILRESGPAKAAQSKIESEFKRRDD
ELQRLSSSLRSQAEKFDKDAPVLSESDRVKRQRELSNLDMDLQRKRREFQEDFNRRRNEEFSSIVTKANDAIKRIAEQEN
YDLIIQDAVTVNPRIDITDKVIQSLGR
>SEQF1086_CAE41719.1 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPVLLDPENALALDVLLAGIDAQGLDWHLSAPDAADLPRIRGIGTLSSAGNEEISFLSNPRYQNQLATTRAAAVIVTPDV
AQARQEQGASGHVLVVCKHPYLLYARLAQWFERASRPAGPAGVHPSAVVDPSAEIDADVRVGAQCVIEAGARIGRGARLG
PGCVIGAGSTVGADSLLHPRVTLYAGVHVGERAIIHSGAVLGADGFGFAPDPTLGRGAWGKIPQLGEVRVGNDVEIGANT
TIDRGALDDTIVGDGVKLDNQIMVAHNVRIGAHTAIAACVGIAGSTTIGERCTIGGASMLSGHLAIADDVNISGGTAVTS
NIAKAGRYTGVYPYAEHSEWQRNAAVIQQLALLRRRLRALERE
>SEQF1086_CAE41720.1 (3R)-hydroxymyristol-[acyl carrier protein] dehydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MELDIKGIMDRLPHRYPMLLIDRVLEMVPGKSIVAIKNVSINEPFFTGHFPHHPVMPGVLIVEAMAQASALFSFTDENGG
LKCDGAKTAYYLVGIDGARFRKPVVPGDQLRLEVEAERLSRTICKYQGRALVDGQLVAEAKLMCAIRSLEE
>SEQF1086_CAE41721.1 acyl-[acyl-carrier-protein]--UDP-N-acetylglucos amine O-acyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGNIHPTAVVDPAAQIDSSVVIGPYSVVGPGVSIAAGTEVGAHCVLDGVTSIGRDNRFYRFCSIGGMPQDKKYSGEPTR
LVIGDRNTVREFTTFNTGTVQDGGVTSIGDDNWIMAYVHIAHDCHIGNNTILANSVQLGGHVQVGDWAIVGGLTGVHQFA
KIGAHSMTGGNSSLMQDAPPFVLAAGNPCRPVGVNVEGLKRRGFSAAAISALRDAYKSIYRRGLSLDEGRAELRARQQAE
PDVAEHLQTMLDFLDASTRGIIRP
>SEQF1086_CAE41722.1 lipid-A-disaccharide synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLRIGMVAGEPSGDLLAGRIIAGLQARAPGVHCAGIGGPQMAARGFEAWHPMHALTVFGYIDAFKRIPSLLSTYGDVKR
RLLAEPPSVFVGIDAPDFNLRLEHQLRQAGTPTVHFVGPSIWAWRYERINKIRAAVSHMLVLFPFEEALYRKEGIPVTYV
GHPLAGVIPMQPDRAAARARLGIDADARVLAILPGSRSSEIRLLAPRFLQAAAELVRRDPRLQCVVPMVNPQRRAEFEAI
ATQHPVPGLRCVTAAEGQGETPVAWSVMEASNAVLVASGTATLETALYKRPMVISYVLSPWMRRIMAWKSGQQRPYLPWV
GLPNVLLRDFAVPELLQDEATPAALAEATWQALTDEAGAARIEARFTALHQDLLRDTPALAAQAILEVADGAA
>SEQF1086_CAE41723.1 ribonuclease HII [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEQPDLFGTLAPLPAIIAGVDEAGRGPLAGAVYAAAVILDPDRPVDGLADSKVLKAEQREALAVQIRAQALAWFVASASV
QEIDSLNILRATMLAMQRAVAGLAMAPELAMVDGNQAPKLRCAVQTVIKGDALVPAISAASILAKTARDADLLRLHALYP
QYGFDQHKGYGTPQHLSLLREHGPCPEHRRSFAPIKAYGAP
>SEQF1086_CAE41724.1 putative RNA methyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKHLSSRDNPAVKALHKLAAGGGRRDGRILLDGVHLCQAWLAHQGTPLQALFDVARLDHPEIRALAGQVPPQHCLALDSR
LLQGLASVESGQGVVFVARAPEPALPERIDENCVLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQG
AHFALHIHEHLDLEAVLPRLDVPLVATTLARSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHESAAVESLN
VGAAAAICLFEQRRQRR
>SEQF1086_CAE41725.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTSTPIERAVYIVSDSTGITAETFSHSVLSQFDEVNFKPVRLPFIDTLDKAREVVARINRNALEAGVPPIVFSTLVNPEI
LALVRQSNGVFLDLFGTFVSHIEQALGLKSSHSIGRSHMAANSEKYRNRIDAINFSLAHDDGQFVNQLDQADVILLGVSR
CGKTPTSLYLAMQYAVKAANFPLTPDDFERGALPKTIAPYRGKLFGLSIQPERLAEVRNERRPNSHYARLEQCRYEVAEA
ERMMRREGISWLSTTTKSIEEIATTVLQEVGLERV
>SEQF1086_CAE41726.1 phosphoenolpyruvate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSYVVSFEQLRMTDVDSVGGKNASLGEMISQLAGAGVRVPGGFATTAQAFRDFLQASGLDKRIADRLATLNPEDVRELAS
AGAEIRQWVIDAPFSPEFEQAIRTAFAELDADGKGSFAVRSSATAEDLPDASFAGQQETFLNVVGVDDVLDKIRHVFASL
YNDRAISYRVHKGYAHAEVALSAGIQRMVRSDKGSAGVMFTIDTESGFQDVVFITSSYGLGETVVQGAVNPDEFYVFKPS
LERGNYPIVSRRIGSKLIKMEFDPERPEGRAVRTVDVPVSERNRYSLTDDEVIELARYAVIIEKHYQRPMDIEWGRDGVD
GKIYILQARPETVKSQQGVNDVQQRYRLKATGQVLVTGRAIGQKIGAGKVRVVADISEMDKVQAGDVLVTDMTDPNWEPV
MKRASAIITNRGGRTCHAAIIARELGIPAVVGCGDATDLLKDGQAVTASCAEGDEGRIYDGLIETEVEEVRRGEMPPIDV
KIMMNVGNPQLAFDFAQIPNAGVGLARLEFIINNNIGIHPKAVLDYPNVDGELKKAVESAARGHASPRAFFVEKLAEGVA
TIGAAFWPKPVIVRMSDFKSNEYRKLVGGSRYEPEEENPMLGLRGASRYIAADFEECFRMECEALKKVRDEMGLTNVEIM
VPFVRTLGQARKVVELLAAHGLARGENGLKLIMMCEVPSNAILAEQFLEYFDGFSIGSNDMTQLTLGLDRDSGMELLAAD
FDERDDAVKFMLRRAIKACLAANKYVGICGQGPSDHPDFAQWLKDEGILSMSLNPDTVVETWQQLAK
>SEQF1086_CAE41727.1 probable class-I glutamine amidotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAALPVLILHTGNPAAALRAAHGSYAEMLRQAAGLDAAGTHVVASYKDEAPRAPGAYRAALITGSPAMVTDRAPWSEAA
ADWLRQAAGAGLPMFGICYGHQLLAHALGGVVGDNPAGRELGTLPVELLPAAATDPLLAGLPAAFDAQMMHEQAVLAAPP
GATVLARSAQDAHQILRLAPRIYTAQFHPEFTPGFVAAHLRHHAALYAAHGLDVEGLARAAGPTPLAASLVRRFLACCA
>SEQF1086_CAE41728.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MWIWFGLAAVALIGEVGSGTFYLLLVALGLAAGGIAAWLGADLAWQLVACGLVALLGLLALRRTGVLKKREVNAARNADV
NLDIGQSVMVDAWSDAGTTQVYYRGAQWQAELAHGQPRQAGRHIIAEIRGTRLVLAPAPAA
>SEQF1086_CAE41729.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41730.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIDVSTVVLIVIVILALMIVVKAIAIVPQQHAWVVERLGKFDRVLSPGAGFVIPFIERVSYKHSLKEIPLDVPSQVCITR
DNTQLQVDGVLYFQVTDPMRASYGSSNYISAITQLAQTTLRSVIGKLELDRTFEEREFINSTIVASLDEAALNWGVKVLR
YEIKDLTPPNEILRAMQAQITAEREKRALIAASEGRRQEQINIATGEREAAIARSEGEKQAQINQAQGEAAAVLAIAEAT
AKAIEQVGEAVRQPGGMEAVNLKVAERYVDAFSNVAKEGNTLILPSNLSDVGGLIASAMTIVKSTKSA
>SEQF1086_CAE41731.1 probable membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLAPVTLLVISTLSSLVTQGVLGSLLRSGIAGIRELMWANVLVLCSLLLFTLQANPAMPPWLAIQAPNVLISSGVVLFCA
GVFRFMQQRPPWRLLLLGLALSIGANIWFHYVDPSVNARVVTASGLHALLWGGSAWTIYRNMPLRRSRYSYWFAGVTATV
AALGHALRTAVYGLQIEQTQGLLQSSVWNVAFLAIGVLVMPSMTLGMIMMIHDRMLAEREREANQDFLTGLLSRKAWWRE
GERLCARALRTGRPLTLLALDIDRFKQVNDQHGHAAGDVVLRHFGSLATALLRSGDVIGRLGGEEFVALLPDTDGDTGVS
VAERLLASVRATPCSHGGKALTYTFSGGVAQYRAGDTLPVLVERADAALYAAKQAGRDRIRNRAG
>SEQF1086_CAE41732.1 SsrA-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSIIDNRKATHDYFIEDRYEAGMVLEGWEVKAIRDGRVQLKESYVIVRDGEIYLLGMHVSPLPTASTHIRPDATRTRKLL
LKAEEIRKLIGKVEQRGYTLVPLNLHYKNGRIKLDFALGRGKKLYDKRDTAREKDWQREKERVLKHDTRVNQRDS
>SEQF1086_CAE41733.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHKVQRSVLVPYSAAQMFDLVADVEKYPEFMPWCGGAEVHSRSEHGMQASILISFAGLKQRFSTRNTHDYPQRIDLELVD
GPFSMLVGHWVFQPLAEDACKVLFTLEYAFSNRALEMVVGPVFNRIAASFIDSFTKRAQAKYGE
>SEQF1086_CAE41734.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTVCHACPDGAWQRAVTLPAGATVADAVAASGFAAAHRGQDPWAHGVGVFGKAQAADAPLADGDRVEIYRGLSFDPKESR
RRRAEHRRALAARGGKARPAGLL
>SEQF1086_CAE41735.1 probable acyl-CoA dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDFELTDEQRAFAQAARDYAQGELAPHAARWDAEGIFPREAFARAGELGFCAIYASEEIGGLGLPRLDATLVFEEMAAVD
PSTTAFLTIHNMATWMVGQWARPAVREQWGPLLASGEKLASYCLTEPNAGSDAGSLATRAERQGDDYVLNGAKAFISGGG
DTDLLVVMARTGGDGPGGVSAFAVPADAAGIAYGRKEEKMGWNSQSTRPITFEQVRVPASHMLGEPGEGFKIAMKGLDGG
RINIGTCSVGAAQGAMDAARRYMDERRQFNRKLAQFQALQFKLADMATHLVAARQMVRLAACKLDAGSADASTYCAMAKR
FATDMGFQICLDAQQIHGGYGYLRDYPLERLVRDTRVHQILEGTNEIMRVIVARQLLEKGADIR
>SEQF1086_CAE41736.1 enoly-CoA hydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAPVLFEERIADNGVRLGVATLNAPQTLNGLSLEMVELLDARLRAWAADAAVAMVILQGAGEKAFCAGGDLHGLYRSMR
ENTGGDPWANTHARRFFEHEYRLDYLIHTYPKPVLCWGHGIVMGGGVGLMMGASHRVVSETTRMAMPEITIGLFPDVGGS
WLLNRMPGRTGLFLALTGAHVNASDAFFAGLADFRLDSAQWPDFCASLLSLPWAGQPGGPGTGNAAPRSINDGLLRQALL
AHEPATQLEPGPLRQHSFLVNSLCSGKRLDDIYAEIAELKDHADPWLARAAATMLAGSPGSARLAYALQQHTRLRSLADV
FRIEYVAALACAAHGDFAEGIRALLVDKDRQPRWNPATLSEASDDWVRKFFDEPWPAGQPHPLADLGHGA
>SEQF1086_CAE41737.1 3-hydroxyisobutyrate dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSIAFIGLGNMGAPMALNLVKAGHDLTVFDLVPAAVKTLTDAGARAAGSAAEAVQGAELVISMLPASKHVEGLYLGQDL
LASIGASALVIECSTIAPDSARKVAAAAQARGIAMIDAPVSGGTGGAAAGTLTFIVGGEAPALERARPVLASMGKNIFHA
GGAGAGQVAKICNNMLLGILMAGTSEALALGVANGLDPKVLSDIISKSSGRNWATELYNPWPGVMEHAPASKGYAGGFGV
DLMLKDLGLAAEAALGTRSSIPLGELARNLYSLHSQGGSGGLDFSSIVNLYSPGERN
>SEQF1086_CAE41738.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPDTEAFEAARQRVHDNFARQSVMALIGARLGAVEPGEVEIALPYRADLCQQNGFLHAGISTTIADSAGGYAAYTLFGPG
EDVLTSEFKMNFLAPADGEHFVASGKVLKPGRRLSICQVELRACRGERSTLCLVGLMTAVRVTPR
>SEQF1086_CAE41739.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPARSHHRIFRSGWLRAAVLGANDGIVSTASLIAGVAAAQASYAAILTSGLAGLVAGALSMAAGEYVSVKSQADIEAADL
RLEQSSLKRNSREELEELTGIYVERGLSPDLAGQVARQLTRHNALDAHARDELGISVHNRAQPVQAALASAASFAVGAAL
PLAIAMAAPLAQLMPVVIAGSVAGLGILGAVAARAGGAPVGPAAVRVVLLGAAAMALTAGVGALFGVAV
>SEQF1086_CAE41740.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
>SEQF1086_CAE41741.1 transaldolase B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPSQLEALRRHTVVVADTGDFEAMRALRPTDATTNPSLILKAVQQEAYRPLLVQTARAHQGASPAEITDRLLVAFGRQIL
DIVPGRVSTEVDARLSFDTRATVERARGLIALYQAAGVPRERVLIKIASTWEGIQAARVLQAEGIRCNLTLLFCLPQAAA
CADAGVQLISPFVGRIYDWHKKNAGAEWVEDARRGANDPGVQSVSRIYRYYKRFGIETEIMGASFRNVDQILALAGCDLL
TISPELLTRLAQTEGEVPAALSPQAGHDDADAVRLDGGEVAFRTQLNEDAMASEKLSEGIRLFVADARKLDALIESHGAA
>SEQF1086_CAE41742.1 carbamoyl-phosphate synthase small chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADGTIFRGVSIGVPGHTVAEVVFNTSMTGYQEILTDPSYAGQTVMLTYPHIGNTGVNPEDVEANRVYAAGLVVRDCPAR
VSNFRATQSLPEYLNAQGIVAIAGIDTRKLTRILRESGAQGSCILVGEDAERAVELARGFPGMSGQDLAKVVSIKERADW
TQGTWELGSGYTQPAQDRFHVVAYDYGVKSNILRLLADRGCRVTLVPAQTTAEEAFKLQPDGVFLSNGPGDPEPCDYAVD
ATRAFLERKLPVFGICLGHQLMGLALGGKTVKMKTGHHGANHPVQDVQSGRVFITSQNHGFAVDAATLPANTRVTHISLF
DGTLQGFELTDRPAFCFQGHPEASPGPHDIIVLFDKFISLMAGQK
>SEQF1086_CAE41743.1 carbamoyl-phosphate synthase large chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPKRTDLKSILIIGAGPIIIGQACEFDYSGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIER
EKPDALLPTMGGQTALNCALDLAHHGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGVAHSMDEAWEVQR
RIAADIGTAGFPVVIRPSFTLGGSGGGIAYNAEEFEVICRRGLEASPTKELLIEESLLGWKEFEMEVVRDKADNCIIVCS
IENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNASIAVLREIGVDTGGSNVQFAVNPQNGRMIVIEMNPRVSRSSALASK
ATGFPIAKVAARLAVGYTLDELRNEITGGATPASFEPTIDYVVTKVPRFAFEKFPQADARLTTQMKSVGEVMAMGRTFQE
SFQKALRGLEVGVDGLNQKTTDREKLQIELGEPGPERIWYVGDAFAQGFTLDEVHGLTRIDPWFLAQIKEIVDIELALEQ
KTLADLDYATLWELKRRGFSDRRLAFLLDSSESEVRKLRHQLNVRPVYKRVDTCAAEFATNTAYMYSTYEEECESQPTDR
KKIIVLGGGPNRIGQGIEFDYCCVHAALALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHKENPVGMI
VQYGGQTPLKLARALEANGVSIIGTSPESIDVAEDRERFQKLLNKLGLRQPPNRTARTEAEALAHASEIGYPLVVRPSYV
LGGRAMEIVHEQQDLERYMREAVKVSNDSPVLLDRFLNDATEVDVDCLADGQTVFIGGVMEHIEQAGVHSGDSACSLPPY
SLSAEVIAEIKRQTTMMAKALNVSGLMNVQFAIQGGDVYVLEVNPRASRTVPYVSKATGLQLAKIAARAMAGRTLADQGI
TREVVPPYFSVKEAVFPFVKFPGVDTILGPEMKSTGEVMGVGNSFGEAFVKSQLAAGVRLPDSGTVFISVRNQDKPRAVE
VARGLHNLGFKLVATRGTAAEIEAAGIPVQVVNKVTEGRPHIVDMVKNGEVSLVINTVEERRNAIADSRTIRTQALANRI
TFFTTIAGARAAVEGMQFMRQGLGLQVYPLQELHAGLTAQ
>SEQF1086_CAE41745.1 probable phosphoglycerate mutase 2 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTEIWFIRHGETDWNRQRRLQGWQDIPLNESGREQARLLAERLRDTASEHPFAALYSSDLKRAHDTAASLSAALQLRVRT
EPGIRERGFGVLEGLEMENLEQQAPQAAQAWRSRDPLRALEGGETLGQFQARIIATVDDLAARHAGERILAVTHGGALDI
IWRHASGVPLDAPRYAALLNVSINRVAIAQRKWEVLGWGDVEHIGAETGNDVTP
>SEQF1086_CAE41746.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEIYQIRAFVTVARLGNLTKAAEALSLTQPAVTAQLKALEQSLGVALFDRAAGRLSLAKAGEALLPTAEALLVLGAQLKS
EARQLQGQLQGVIDLGVPSEQPDFLRLGELAAALRQHLPLVELKTHVLPSTALLEQVGTARLAGALTIVAHPPRGVTWHA
LRSVRYRIALPASLADTLKRAGWRDIAQLPWLDGPSGSHLHLLLRDMFERHGLAPRVVMQNDDQSNLDALVRAGAGCALL
REETALAGAAAGDFIVWGQARADATLGFIAPPEQAGEPMLVALISIIQKIWKPGAAVAT
>SEQF1086_CAE41747.1 probable ATP-binding component of ABC transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKKVSVECRNIRLSYGRNEVLKDISIHIEPGEFFALLGPSGSGKSTLLRLIAGFNRQSHGQLLVDGRDIGATPPWDRNIG
MVFQNYALWPHMTVWDNVAFGLVERRLPRAEIRDKVAAALELVGLADFGRRRPNQLSGGQQQRVALARTIVIEPQVLLLD
EPLSNLDKKLRVQMRQDLLSLQRRLGITTIFVTHDQEEAMTTADRMAVLDHGVVQQIGAPSTLFDYPVNRFVANFVGTMN
VLEGEVRERSRGGVVLAVDGVGELHLPVNGDAPQAGRLAASFRPHTVLIEMADGTGDARYVWLPGVVESSEFLGEFTRYQ
VQVGEQRLTADQHHLAGLSPFPVGAPVAVGLEPTQIRLLAA
>SEQF1086_CAE41748.1 probable permease component of ABC transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTSTGTFRLPAGPALAALLALFLVFPVGTVFYTAFVNADGSFTLGHFGAFFNQPLMKEAFFNSLYVAGWSSLLASLIAVP
LAYFTVRFEFRGALLIQTLGVLPLIMPPFVGAVAMQLIFGRSGSVNLLLDDWLGITLPFMDGLNGVIFVESLHYFPFILM
NLVVALRNIDGSMEEAAFNLGSRGFRLFCRIIFPLALPGYLAGTSLVFVKVFDDLGTPLVLGTTNMLAPQAYLRITQVGL
EDPLGYVISVIMIGFSILALWLSARVLKGKDYSTLQKGGNAIHKRRLRPVESMLAYAWIGAVLLLVLSPHLGVLLLSLAS
VWSYAPLPDGYTLAHYTAVFTESQGMIANTLLYCGLAAGVDVVLGTAIAYLMLRTRLPARQWLDFIASAALAIPGIVLAI
GYLRTFRGVEIPGTGVLLTSSWVLIMIAYSVRRLPYALRSCVAALQQINVSLEEAAESLGASRLRTIRRIVVPLMAGGML
AGFVTSFITAAVELSATIMLVTRDSQAPMSYGIYLYMQSAAGRGPGAALGVLAVVAVGIGTYVSHLLVERASARQRPARS
GESS
>SEQF1086_CAE41749.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE41751.1 chorismate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGNTLGTLFCVTNFGESHGPAIGCVVDGCPPGLPLEAADIQAELDRRRPGTSRHVTQRQEADQVEILSGVYEGVTTGTP
IGLLIRNTDARSKDYSNIADTFRPGHADFAYWRKYGVRDPRGGGRSSARLTAPTVAAGAIAKKWLASQFGVRVRGYMSQL
GPIAIPFSSWDDVPGNAFYAPNAAVVPELEAYMDQLRRDGDSVGARIEVVAEGLPAGWGEPIYDRLDADIAHAMMGLNAV
KGVSLGAGFESIAQRGSEHGDEITPEGFASNHAGGVLGGISTGQPITVSLAIKPTSSIRVERRSVNRAGEPVMVQTLGRH
DPCVGIRATPIAEALLALVLIDHALRQRAQCGG
>SEQF1086_CAE41752.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPVIQTFLRAAAVAGLALLAGCAGVSTTQSGAIGVDRTQYMSSLVPEQALVQEAGQQYAEIVQEARAKGLLDRDPAQLS
RVRAISQRLIAQTGVFRADAANWPWEVHVLSVDEVNAWCMPGGKIAVYTGLLAHIKPTDDELAAVLGHEIAHALREHARE
RVSQQMATSIGLSVLSMATGSPGASDLGGKLTEVMFTLPNSRTHETEADRMGVELAARAGFDPRAAVTLWQKMGAADGNA
PPEFLSTHPSASTRIGELQQALQKVLPLYEQARGQAAK
>SEQF1086_CAE41753.1 molybdopterin-guanine dinucleotide biosynthesis protein B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRIIGFAGWSGAGKTQLLSRLIPCLKARGHSVSTLKHAHHTFDIDTPGKDSFRHREAGATEVLIASSARWALMHELRDE
PEPELGELLARMCPVDFILVEGFKRNAHIKIEVHRHANGKPWLFPDDPSIGAIACDAAPPHGTLPRVALDDYDAVADLVE
RLAWPLDTTIARLAAPVSPA
>SEQF1086_CAE41754.1 molybdopterin biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNHAPTPSLEEIASCVNGYDPDALPISQAREFIDRLVPRLNAVEWLPLRSALGRVLAHDIVSTLNVPAHDNSAMDGYAFA
GAELAGGADTPLRVVGSGLAGDNYQGTVGPGQCVRIMTGAVMPDGLDTVIPQEFVRQDGDRIVVPAGAVRPGDNRRLAGE
DLALGENALTAGRVLRPADIGLLASLAQAEVPVVRRLRVAFFSTGDELRSIGEPLDPGCVYDSNRYTIWSMLQRLGVEVL
DLGVVRDDPHALETAFSAAADNADVVITSGGVSVGEADYTKKVMAKLGDVLFWKIAMRPGRPLAIGRIHSNGRDAILFGL
PGNPVAVMVTFYALVRDALLTMSGATAQPMPWLRCVAAQPIRKKPGRTEYQRAIVTPAPGGGWQAAITGSQGSGILRSMS
QANGLLVLHHDQGNIAAGEPVDVLPFDGVI
>SEQF1086_CAE41755.1 molybdopterin-guanine dinucleotide biosynthesis protein A [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIDKNDITGLILAGGRASRMGSVDKGLQNFHGMPLAMHTLLRLGPQVGDIMINANRNLAAYEAMGAPVWPDALPDFPGPL
AGFAAGLERCETPYMVTAPCDTPNFPADMVSRLADALIAEGAQIAMAATTADGALRTQPVFCLMRIDLLDSLLEFLHSGQ
RKTEIWANQHRCAIVRFDDAQAFAGANTLAELRQLQS
>SEQF1086_CAE41756.1 putative iron sulfur binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVASESILQALQTVIDPNTGKDLVTTRAIRNLEVNGADVTFDAQLGYPAKSQIPALRRALIAAARGVAGVDNVSVNMQSV
IETHAVPRGIALLPNVKNVIAVASGKGGVGKSTTAVNLALALAAEGARVGLLDADIYGPSQAQMMGIEGRPQSEDGKTME
PLENYGVQVMSIGFLVDADEAMIWRGPMAVQALEQLLRQTNWKNLDYLVIDMPPGTGDIHLTLSQKVPVTGAVIVTTPQD
IALLDARKGVKMFEKVGVPIVGVVENMAVHVCSQCGHAEHIFGQGGGQRMAQDYGLAYLGALPLDINIRQQADGGRPSVV
ADPDGEVAGLYKDVARQVAVAVAAMGKDYSSKFSSISISRAPAGG
>SEQF1086_CAE41757.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDTLPLSMEVAVVMRKERIVGEMSRWQDSRWVLEDVVPDEPGFGRAPRMLYHDENQQRWLHPGLTVRLFKDDAEGYLLN
VSAPAPCWFVLWRMEEEPGVASEPLARPEIVTLSYHDAGRWLDAQETVEQIPAPAYIVQWLHAFVQAHYVPEPKRRRRPV
SFQPLQDRFGNPASVSTTKKRGGGEP
>SEQF1086_CAE41758.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQDPAGFIGRWSRRKSEARQQAETAADPAAGVAQASLADTPFAGAPAVADRPEETPERADAAPVQAPGPAADAETDLPL
PTLDDVRALTLDSDFSRFVAGGVSPDVKNAALKKLFTDPHYNVMDGLDVYIDDYTQLEGLPQETVRRMASAKVFKLFEED
EPASAQGEPADGACGPGQQAPGAMAEPDAAPAVPASAPDAIQSALPRDDAAGPADGPLPDAEPRRD
>SEQF1086_CAE41759.1 putative iron-sulfur binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTLICDCNRTMPLQPEALGQALGETLTLHSTLCRREAGAFQAAIRDGQDVVVACTQEKRLFGELGGATQGAVSPVRFVN
IRETGGWSRDAAQAMPKLAALLAAAHLPEPDPVATVTYKSGGRLLIIGSLDQAEQAAALLDDVLDVTLFGQGPGRAGGAQ
ERRYPVLSGRIDSLQGWLGAFELRWTRGNPIDLDLCTRCNACISACPDGAIGLDYQVDTARCTSHRACEQACTVAGAIDF
SRSPENFTDQYDLVLDLGGTPLFTQHAPPQGYFAWGGQAPATLLRLRELVGEFEKPKFFDYRQQLCAHSRNETVGCRACI
DICSARAISSDSHHQRIVVNPSLCVGCGACTTVCPSGALTYTYPRATDQGSKLRTLLATYAKAGGQDAMLLLHSQQEGAR
LVEQLGRQAALKQADGVPANVIPMALWHTASVGLDLWLSAVAFGARHIAVLTTAEEAPQYLEGLQAQFAQAQAILNGLGY
AGIHLSLVPADTPQALDAALRQLAPAQGPAVAARHAVVQEKRSTLDLALDHLVAHAPAPAPESIALPAGAPGAGAPFGTV
AVDSDACTLCMSCVSACPSNALLDNPQSPQLRMVEKNCVQCGLCATTCPENAITLVPRLLLAPRRREAVVLNESAPFHCV
RCNKAFGTQKGVEAMLGRLGGHAMFQGAALERLKMCGDCRVIDLYSAENETRITDL
>SEQF1086_CAE41760.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNVSVTFASIAAPGFDEEVARAEIYGLLAQLYYAPPPSDLLAQLRAAPRQAPDQGGFLEASWQALVACAAEMGDDAVRAE
YDALFGGVGKPDIYLFASHYLTGFLNEKPLVGLRDDLAALGLRRDAAMSETEDHIAYLCEVMRYLIAGDDVAVANLTQQR
QFHARHLRPWIADLCDAIAAHPAARFYGALAEFTRAFFSVEAQAFDMMA
>SEQF1086_CAE41761.1 formate dehydrogenase large subunit precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAQALPTMDRRTFLRRSGLGVGAGLAATQLSLVKRAEAAEGDGKVAIGNTKIEVRRTVCTHCSVGCAVDAVVENGVWVRQ
EPVFDSPINLGAHCAKGASVREHGHGEHRLRYPMKLVNGKYQRISWDTAYEEITAKLMQLRKESGPDSVYWIGSSKHNNE
QSYLLRKFVSFWGSNNCDHQARICHSTTVAGVANTWGYGAMTNSYNDMQNSKVALYIGSNAAEAHPVSMLHMLHAKETGC
KMIVVDPRFTRTAAKADQYVRIRSGTDIPFLFGLLYHIFKNGWEDQAYIDARVYGMDEVKADILAKWSPDKVEEACGVDE
ATMYSVAKTMHENRPGTLVWCMGQTQHSIGNAMVRASCIVQLALGNVGKSGGGANIFRGHDNVQGATDVGPNPDSLPGYY
GLAEGSWKHFANTWGVDYEWIKDRYASPAMMTKPGITVSRWIDGVLENPDLIDQDTNLRAVFYWGHAPNSQTRGLEMKRA
MDKLDLLVVVDPYPSATAAMAAMPGKAEDLNPNRAVYLLPAATQFETNGSCTASNRSLQWREKVIDPLWESRTDHMIMHQ
LAEKLGFGKELSKNYKMQKVKGMDEPVVEDILREINASVWAIGYTGQSPERLKAHMRNMHVFDVKTLRAKGGKDAETGYD
LTGDYFGLPWPCWGNPSLKHPGTANLYDTSLHVMDGSGNFRANFGVERNGVNLLAADGSHSKGADLTTGYPEFDHVLLKK
LGWWEDLTPEEQKAAEGKNWKTDPSGGIIRVTMKVHGCHPFGNARARAVVWNFPDAIPQHREPIYGTRPDLVAKYPTHND
LKTFWRLPTLYTSLQQKNVAEKLYEKFPIILTSGRLVEYEGGGEETRSNPWLAELQQESFVELNPKAAADRGIRNGDRVW
VLTPTGARLNVQALVTERVGPDTAFMPFHFSGHWQGVDMLASYPEGAAPIVRGEAVNTGTTYGYDSVTMMQETKTTICNI
EKA
>SEQF1086_CAE41763.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTNPRLLLIAAAAVFGLAACTEKPQELHSGVVGKPAYDGTGSNFVAPGWKQGDKNSWQQELKVRAQRGQNEYTRVN
>SEQF1086_CAE41764.1 formate dehydrogenase subunit C precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIRSLFAALLASALLATAGAQTAAPSADAPAMGGIQSANIFEVKPDASEQPGYAEQTNAERAKVQPGNNAPMWRQVNSGQ
PGYSSLPASEAPEAGVLIQRFVQYPGSQYTTAGEAWRQVRNNWLIPYGGGLLLIVLVAIALFFLAKGPMKLREAETGRRI
ERFTYFERAAHWVNATAFVILALTGIVIAFGKFFLLPIMGSAAFGWMTWLLKTVHNFVGPVFAVSLLVVILTFIKDNLPR
RDDLIWLRKGGGLITGAHVPSHRFNAGEKIMFWVGMLFLGALAVASGLFLDQVFPGLSYVRGNMQIAHMVHAASVVLMMC
MIMGHIYLGTIGMRGAFKAMKTGYVDETWAREHHELWYDDIKAGKIPAQRTPDKSAKRLTRPAGA
>SEQF1086_CAE41765.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKKIAALIIALAAAPALAKLPPPTPEAAAKAKETAAKAAWSGKMDAFRLCRVQDEVAATYFERAKAAGKTTRAPMATPEC
KDPGPFVYNVEDKPREAAGAHSPADTAAKPPSSPAPAAEQKPGQ
>SEQF1086_CAE41766.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRHIEISYSLGPSDPRPALLRNALMDLLSAVREHGSISAAAKALDLSYRHVWGELKKWEQTLGRTLIVWDKGQPARLNEF
GEKLLWAERQAQARLAPQINALRADLERAFAVAFDDAAHVVPLYASHDNALQALREHAVASAKLHLDIRFTGSVDAISAL
NEGRCVMAGFHTREAPEPGSLAERTYKPMLQPGLHKIIGFAQRSQGLIVARGNPHGITSLADLAASGVRYVNRALGTGTR
VLFDELLERAGLKPAAIAGYERTEPSHAAVAHAIVSGSADAGLGIEPAAHRERLDFIPLVRENYFLVCLKSTLDQPSTQA
LLSILRSPAWQATLAAIPGYAPAQTGQVLSMRRVLPWWDFARKKVRRTRPA
>SEQF1086_CAE41768.1 probable ATP-binding component of ABC transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTVLFDLRGADVYYGPVHALRAAELRICAGEQVALVGANGSGKSTLLRLLHGLVTPRAGQARCAARARQAMVFQQPYMLR
TSAQNNVALALWLRGMRWRDARARALHALERVELIELAGRNAKSMSGGQQQRLALARAWALEPEVLLLDEPTASLDPHAK
RDVELLMEQFARPRDGLAPAMIFSSHNLGQVKRLARRVIYLERGRILADLPVDQFFNGPLPEAAALFVKGERIP
>SEQF1086_CAE41769.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKILNAIRRGLALAGLATVLAAPLAARAETIVMASTTSTEQSGLFGHLLPAFKKASGIDIKVVAQGTGQALDMARRGDAD
VLFVHDQVAEEKFVADGYAVKRYPVMYNDFILVGPAKDPAGVKGNDIVAALGKLAKDNADFISRGDKSGTHAAELRFWKQ
TGSDSKGSGYKECGCGMGPALNMGSSMNAYVLSDRGTWLSFKNPGELKILVEGDKRLFNQYGVMVVNPAKFPHVKAKAAQ
QFVDWVTSKAGQDAIASYQVNGQQLFFPNADK
>SEQF1086_CAE41770.1 3-isopropylmalate dehydratase large subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAQTLYDKLWDAHVVHQESDGTCMLYIDRHLLHEVTSPQAFEGLALAGRQPWRVGANLAVADHNVPTLNRAQGIEDPISR
LQVDTLDDNCAKYGITEFRMNDLRQGIVHVIGPEQGATLPGMTVVCGDSHTSTHGALGALAFGIGTSEVEHVLATQTLLM
KKAKSMQINVEGELPFGCTAKDVVLHIIGIIGTAGGTGHAIEFSGSTIRGLSVEGRMTVCNMAIEAGARSGMVAVDDKTI
DYFRGRPFAPVGVLWDQAVGYWRTLHSDAGARFDRVINVDARDIKPQVTWGTSPEMVLPVDGRVPDPDREKDDVRRSGME
RALEYMGLKPNTPLVDIRVDRVFIGSCTNSRIEDLRAAAVVARGKRVAANVRQAMVVPGSGLVKQQAEREGLDKIFIEAG
FEWREPGCSMCLAMNADRLEPGERCASTSNRNFEGRQGQGGRTHLVSPAMAAAAAVAGHFVDVRSFR
>SEQF1086_CAE41771.1 3-isopropylmalate dehydratase small subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQAFTQHEGLVALLDRENVDTDLIIPKQFLKSIKRAGFGPNLFDELRYLDHGEPGMDNSKRPLNSDFVLNQPRYQGASVL
LARKNFGCGSSREHAPWALTQYGFRAIIAPSYADIFFNNSFKNGLLPIVLGELEVARLFDEVKAFPGFKLNIDLERQVVI
APDGRELGFDIEPFRKYCLLNGLDDIGLTLRQADKIRAFEAERLARHPWLESRPVA
>SEQF1086_CAE41772.1 3-isopropylmalate dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTHQIAVLPGDGIGPEIVEQAERVLKALDLPLELRQAPVGGAAFDQFEHPLPPATLELAQGSHAVLFGAVGDWKYDTLPR
EFRPEQAILGLRKALGLFANLRPAILYPELASASSLKPEIVSGLDILIIRELTGDIYFGTPRGVRTAADGAFAGEREGYD
TMRYAESEVRRIARIGFESARKRNKKLCSVDKANVLETSQFWRDLVIEVSRDYLDVELSHMYVDNAAMQLVRNPRQFDVI
VTGNLFGDILSDEAAMLTGSIGMLPSASLNAAGQGLYEPSHGSAPDIAGQGIANPLATILSAAMLLRYSLNLAPQADRVE
AAVRKVLADGLRTADIHEAGTTKVSTSQMGDAVLKALG
>SEQF1086_CAE41773.1 aspartate-semialdehyde dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQAVGLVGWRGMVGSVLMQRMRDENDFALIEPVFFSTSNAGGAAPAWAEGAGSLQNAYDIDALKKLPIIVTAQGGDYTS
EVYPKLRGAGWQGIWIDAASTLRMADDAIIVLDPVNRPVIDAALKRGVRNFVGGNCTVSCMLMGLAGLFNNDLVEWMSSM
TYQAASGGGAQHMRELLTQFGLLNQAVKPLLDDPAAAILDIDRGVLARQQDPSLPQEHFGVPLGGNLIPWIDKDLGDGMS
REEWKAEAETNKILGRGAAFGTPATPIDGLCVRIGAMRCHSQALTIKLKRDVPLDEIEDLIAAGTQWAKVVPNTKEDTVK
ALTPVAVTGTLDIPVGRLRKLSMGLQYLGAFTVGDQLLWGAAEPLRRMLRIALAEA
>SEQF1086_CAE41774.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRSTLRPLQPARRSQALSWALVLALGAGATGAEAARLGHARVVSPPGAALQVVVPLLELSADDLATLQVSLADEAAWRQA
GLTPPVPLSSATVRIEPGADASRRNVRISSSQPPAGNAVDVLLDLRSGAGQRQVQVTVLVPPRGSAARVAPASVGTPAPA
GQASAGSIDVRRGDTLFGIAQRNAVAGASVYQMLVALWRANPEAFIQNNMNLVRAGETLDIPDAATVRAIDPAEARRIFA
QHAEAFARYRGRAGALAAGGAAVSGTGEAGAGRLGSAAQAEAAGAATAQDRLRLSSAQGGANAQADAAGDARASSGRALD
DAQQRVEKLQSNVDALSQAAGAGKTASGEGSAPANASAGAGGQPGADGKAGADGKPGSDGKPGADGKPGADGKPGGAAAG
AGAATQAGAASAGSTGGNGAAGSAGAGTAGSGPAAAAAKGESSQGGMPGWLADNLLAIVTAVLALIVFIVAWALRRAGAR
RDDDDEASAAYPEPTLDTAALTRKLDSISLDLDEPPTDEPRPGGKRT
>SEQF1086_CAE41775.1 tRNA pseudouridine synthase A [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRIALGLAYDGSAWQGWQTQPHGVTVQDQVEAALASFAGGGGPVATVCAGRTDTGVHAAMQVIHLDTDLQRRDESWVRG
VNAFLPPSIVVQWARPVSEAFHARFSARSRTYVYLLWRGRVRPALWAGRAGWAFQPLDVPAMRAAARALLGEHDFSSFRS
SQCQARHPVRTLHRLDIDERGAFLVFTLRANAFLHHMVRNLIGALLQVGQGREPVAWMDALLCARDRRLGAPTFMPDGLY
LSAIEYPAEFGFDELDGGITLLSPFTGALG
>SEQF1086_CAE41776.1 putative periplasmic solute-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQRRSFLKQATLGAAAGGAALAAPPLAQDSPTIHWRLASSFPRSADAIFTGGENLAKYVSEATDGKFSIRAFPAGEIVPA
LQVLDAVQNGTIECGHTASYYYFGKDPALCFDGAVPFGLNTRQMNAWMRHGDGLKLTRELFQKYNVVNFPCGYTGTQMGG
WFRNEIKSVDDLKGLRFRASAFAGAVLSRLGVVPQQIAGGDIYPALEKGTIDAAEWIGPYDDEKLGFHKVAKNYYFPGWW
EGTLQVSLYVNQDVYNQLPKHYQAALAQAAAAATNDMIAKYDAENPAALRRLVAEGAQLKAFPKSVMEACYTQAQAVYKE
FSEKDPMFKRVYDSMVAFRDNEIPWFRVAEGSYDGFMATVARGK
>SEQF1086_CAE41777.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKALLALSRGIDALNLRVGRAVTWVTLLVVLVSAGNAVVRKVFHSSSNAWLELQWYMFGAMFLLTAGYTLLKNEHVRVDI
LSSRLPRHKQIWIEIFGVVFFLLPACTLIMVLSWPVFMDSYLSGEQSSNSGGLIRWPVKLLIPVGFALLVLAGLSHLIKC
IGFLRGQCPDPTAREGSKSAEELLAEEIAREALEREASVQEQRNNHEGR
>SEQF1086_CAE41778.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEFLIANLAPIMFATLVLFLLLGFPVAFALAANGILYGLVGIELDLLSPALFQALPQRVFGIISNDTLLAVPFFTLMGLV
LERSGMAEDLLETIGQVFGPLRGGLAIAVVFVGAMLAATTGVVSASVISMGLISLPIMLRYGYDRRLASGVIAASGTLSQ
IIPPSLVLIILADQLGRSIGDMYRAAMVPGFVLAGAYIAYVVIVSLVKPSAAPALPEEARRFREPNGSRGGRSLLVLMLI
SSLSAYVLGQWLENDTAPVDEQVVVSLLLWGLTAFVIAIANKVFRLKMLSALAERVTFVMIPPLFLIFLVLGTIFIGVAT
PTEGGAMGAVGAIIMALIRRRLTLDLLKQAMDTTTKLSCFVVFILVGSTVFGLTFRGVNGDLWVEHLLIGLPGGEWGFLI
VVSVLTFVLAFFLDFFELAFIIVPLLGPVADKMGIDLIWFGIILAVNMQTSFMHPPFGFALFYLRSVAPKDAYKDKITGK
IIQPVTTGQIYWGSVPFIVIQLFMVAAVMLFPGMVMHYKGGQSTVDPASVKIEIESNYGTNIYGDESSDPGAAFK
>SEQF1086_CAE41779.1 N-(5'-phosphoribosyl)anthranilate isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRTRVKICGLTREQDIASAVQAGADAIGFVFYPASKRHVDPARAAQLRREVPAFVDVVALFVNPRPDEVQAVLDHVAPDL
LQFHGDETPQDCGRYGRRYLRAFRAGAPGLDSAAGLAAACRQYADAAGWLFDSYSAGYGGSGQGFDHGLLAGVQADPASC
AIVLAGGLHPGNVADAVRAVRPWAVDVSSGVEDAPGIKSAGKIRQLMAAIKSVDQVAR
>SEQF1086_CAE41780.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41781.1 hypothetical protein BP1492 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MCLGMAGEHMAPNSKHLSLHMPVDFIDALAQAESIDEILKVVATWFMEMFVADRASITFPVNDSHLRVVALEGNRVIDVD
APVPIHGTMVGRVFSRGQAEICDDLAASTDLDCLILASRGLGSCLDAPLRSGRDCYGTINVGRRDRNGFTLADMRKIEAL
AMWIATLIRVHRQVERLTHLSRTDPLTQIMNRRAFTESFQTRRLEGERRRAEVGTGLGFAVVDIDHFKQINDTYGHDVGD
VVLAFVGKMMNEFFRESDCVARFGGEEFCVLMQDVDEGGMQRLLERFRVALGDCVVTHSAGTVSITASIGAVLVKTSVAG
IDRAFRSADLALYKAKADGRNRVRIAPSAEQSHAGNPANRLCYPG
>SEQF1086_CAE41782.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE41784.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAKHHQASGTLCVQWLCPGPAQQRALLELALRCLRDDRLEIRRALRQRDNATVRERLHRAKGAICTLWPDPETLARLEAV
HRQLPRRGSQLWSQAAALESRLLQLEQAMLASLDALGGDPMAQEQQPAPP
>SEQF1086_CAE41785.1 probable two-component response regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLLSRPSRRLRVAILDDHPAVAVGLSAYLGEHGDFEVALTETNAVALAHQLKRHPCDAAVIDFFMPAQSWDGVDFIRRLR
RLCPDMAVITISAGKAHETEYAAFRAGANGFLPKGAPLSLLAELIRTTVVSRRAFFSARTGQLRATIPDPPDSRLTNAER
EILRQIAKGFSVTQISGRLLRSKKTVSTHKRRAMKKLGLADDLALALYLSEKFEQNVYG
>SEQF1086_CAE41786.1 threonyl-tRNA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVQITLPDGSQRQYPGPVTVAEVAQSIGAGLAKAALAGRVAFDGAEPRLVDTSFRIDNDAQLAIVTAKDADGLDLIRHST
AHLLAYAVKSLFPDAQVTIGPVIDNGFYYDFSYKRPFTPEDLQAIEKKMAELARKDEVVTREEWSRDEAVAYFKGIGEVY
KAEIIASIPSNETLSLYREGDFIDLCRGPHVPSTGKLKVFKLMKVAGAYWRGDSKNEMLQRIYGTAWASKDDQDAYLHML
EEAERRDHRKIGRELDLFHFQDEAPGLIFWHPKGWALWQQVEQYMRKVYQDNGYQEVKAPQILDLTLWKKTGHWDNYREN
MFTTESENRVYGLKPMNCPGHVQIFNAGLHSYRELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIFCTEDQLQDE
CAAFTALLQKVYKDFGFTEVLYKVATRPEKRIGSDEIWDKAETALMESLRRTGCEFEISPGEGAFYGPKVEYTLKDAIGR
HWQCGTIQVDFSMPVRLGAEYVDQNDQRRPPVMLHRAILGSLERFIGMLIENHAGAMPPWLAPLQAVVCCISEHSAEYAA
QITQSLKKQGFRVQADLRGEKITRKIREHSLQKIPYLLVVGDKEMQNGTVAVRGLGGLDLGVIALDDFIARLAEDISTRR
NVTQLASAA
>SEQF1086_CAE41787.1 translation initiation factor IF-3 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRLIGLDGEQLGIVKIADAFRLSEQSDVDLVEIAPNADPPVCRLMDYGKFKYQEQKRQAEARSKQKVIQVKEVKFRPATD
EGDYQVKLRNLRRFLEEGDKAKVTLRFRGREMAHQELGMRVLERVRDDLIELAQVEAMPKLEGRQMVMVLAPRKKAVGKP
DAAG
>SEQF1086_CAE41788.1 glutathione synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHVLFIIDPLPLLKAYKDSSVAMMQALQARGHTLSVALQGDLYIDAGEVRTRFAPIALRDGADLHGHDWWRETGAADEAP
LARFDAVVMRKDPPFDMEYVYSTHLLEYAQQQGARVFNSGAAIRNHPEKLAITEFPDLTTPTLVTRDMARIRAFHAAQGD
VIVKPLDDMGGTGIFRLQRSEPNLNAILETLTDNGTRTIMAQRYIPEIVKGDKRILLIGGEPMPYSLARIPLAGETRGNL
AAGGRGVAQPLSERDLHLARTVADRLAGRGLLLVGLDVIGDYITEVNVTSPTCFVEITEQTGFNVPEMFAVALESAAG
>SEQF1086_CAE41789.1 putative IIa component of sugar transport PTS system [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTGIVIVVHAPLGSAMRESVAHVLGDATEALAVHDIHPEDLPDDAAPRVLADILRVDQGQGVLVLTDLIGATPANIAKRA
VADAQAQGIQCCVLAGLNTPMLLRALTYRNLSLAETREKALAGGVQGCLRVD
>SEQF1086_CAE41790.1 phosphocarrier protein HPr [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPSSDIVISNKLGLHARAAAKLTQLASRFSSEIFISRGAQRVNAKSIMGVMMLAAGLGVTVKLEASGSDADQALSEIQTL
FDNKFGEQE
>SEQF1086_CAE41791.1 phosphoenolpyruvate-protein phosphotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARGYAIGRAVVMGAAALEVAHYRIAPEDAAAESQRLTEALAKAQADLLQMADTLPEDAPRELGAMLNVHRLLLGDPLLA
EQALALIAERHYNAEWALTAQGQILGQQFEAMEDEYLRERGGDVRQVIERALHVLAGTSAMLPDGAQLDGNDPLVVVAHD
ISPADMLRLRGGRFAAFVTDLGGPTSHTAIVARSMGVPAVVALGNVRELVRDGDMLIVDGADGVVVLNPSARILAEYQAR
QRVYADERAELALLRDEPAVTLDGIDIVLHANIELPEEASLSLACGAHGIGLFRSEFLFMGRPDLPGEEEQYEAYASVVK
VMAGRPVTIRTLDIGADKTLDDEATVATNPALGQRAIRYCLARPEMFATQLRAILRASAHGPVRVLIPMIAHMHEVHATY
AALESARRELDARGQPYAARVEVGAMVEIPAIAIAIEPFVQALDFLSIGTNDLIQYTLAIDRGDHDVAGLYDPLHPAVLR
LVANTINAGERAGKPVAVCGEMAGDARLTRLLLGLGLTEFSMHPQQLLDVKREVRRAHSNALRVKVAAALNRALPIDPDT
LDAL
>SEQF1086_CAE41792.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTSPRGARRPGASARGWRKPALLAPMRRNHRMLAPALVHGMQDFADCVEKPGGAGLDPPPPAAPHGYQGGAPG
>SEQF1086_CAE41794.1 putative ornithine cyclodeaminase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLQIDAEHTRRALRFTAVIDALRDAFRGGAHVPPRHVHAIESGGAQGTTLIMPAWNDAGYFGVKVINIFPANTHQGLPGL
HATYTLYSARTGVPLAQVDGDVVTAYRTAGAVALGASYLARADARVLLILGSGRIAGLVAQAMRAVRPIERVLVWNVRPA
GAQRLAAELREQGFDAQAATDLQAAVGQADIVSCATLSTEPLVRGEWLRPGVHLDLIGSFTPEMKETDPQCFAGTSVYVD
TDEAPTKAGDLLEAFAAGTLARTQIRGTLADLAAGRAAGRRDAAEITVFKAVGSALEDLTLAAQVYEARQGDVQAQ
>SEQF1086_CAE41795.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTLLARLAVLATALVPAFAAQAEVVIGVDVSTTGPAAAIGIQTNNAIRLWPATLGGEPARYVVLDDGTDVSRAVKNMRK
LTSEDKVDAIVGPNTTAAALAGLDVLAEIKTPMIALAASAVIVEPMSDPKRAWAFKMPQNDSLMASVLVQDMKKKGVKTV
AFIGFADSYGDSWWKEFSQAAGDDLKIVAQERFQRTDASVVGQVLKVIAAKPEAVLIAGAGTPSALPQKTLLERGYAGKV
YQTHGIGTLEFLQVGGRDVEGTLFPTGPGVVARELPDSNPVKKVAVEFADKYEAQYGANTLTQFAGDAYGAWILLDSAVA
RALKTGAKPGTPEFRAALRDALENTRDLTVPNGVLNISAENHQGFDERARVMGVVRNGRFSYAGQP
>SEQF1086_CAE41796.1 putative extracellular solute-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLMRRFNFVKWGLLMVGAGLLAACSDSDSSDPGAAQQPAAQSASTLDAAKAAGKIRIGYANEAPYAYMDSKEARVTGESV
EIARVVLKRMGIDEVEGVLTEFGSLIPGLQAKRFDIIAAGMYVTPERCQQVAFSDPTYGVGQAFLVQKGNPKNLHSYADV
AKNGEAKLGVVVGAIEAEYATKQEIPAGQVVVFPDAVSALSGIEAGRADAYAATTLTVNDLMHKTSAGDKLEKADPFTDP
TVDGKSVRGYGAFAFRKDDQAFADAFNAELKKFVGSDKHRKLVEPFGFTAGELPGDVTAAKLCAAQ
>SEQF1086_CAE41797.1 putative inner membrane component of binding-protein-dependent transport system [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDNTWSLLPPLLDGLAVTLRIAAGAAALAIPLALAAGLARLSASPWLRAPAAVYVEVFRGTSALVQLFWFYFVLPMFGMK
LPALLVGIVVLGANAGAYGAEVVRGAILAVPAGQREAAVALNLTRARTIWRIILPQAVPAMLPPTGNLLIELLKNTALVS
LITITDLTFRGQLLRSETLRTTEIFTLVLLLYFAVALVITGGIRMLERRFKVR
>SEQF1086_CAE41798.1 putative inner membrane component of binding-protein-dependent transport system [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSPIFDWGFALEILPMLGSALAITVQATLLGMLVAVTLGLALALLRRSPFWPVSALTALVIEFVRSTPLLVQMYFLFYVL
PVTGWQMSPLTTGILALGLHYAAYCAEVYRAGIEAVPRGQHEAATALNLSRWRTAVGVVLPQAIPPVVPALGNYLVAMFK
DTPLLSAITVVELLQQSKIIGSTTFRYTEPLTLVGVLFLLLSLVAAWGVRRLEARLKLYGGKR
>SEQF1086_CAE41799.1 putative ATP-binding component of ABC transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSASIRLAKLCKRYGDLDVLRGIDLEIPAGQTVSVIGPSGSGKSTLLRLLMTLDRPTSGAIEIDGESMWHDAQGREMGPN
SAHVRRVRGKIGMVFQHFNLFPHKTALGNVIEAPLYVLGLSRDEAVARGREYLDMVGLGDKLDAYPAQLSGGQKQRVGIA
RALAMCPEVMLFDEVTSALDPELVGGILQILRDLAARRTMTMIIVTHQMKFAERSSDRTLFFDEGNIVEDAESAQLFAAP
REPRTQQFLQSVIEAA
>SEQF1086_CAE41800.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41801.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLNGSCLCGRVAYTVDGPLADVVNCHCAMCRKAHGAAFRTRATVRAEHFAFVRGESDITWYSSSPGNYRGFCSACGTPLL
SRFDQTPDVYALPLGALDDDPGVKAACHVYVAHKAPWHDITDDLPRHPEGRPGH
>SEQF1086_CAE41802.1 formate dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAKILCVLYDDPVGGMPATYARDSLPAIARYPGGATLPTPLALDFTPGHLLGCVSGELGLRPFLQARGHTLVVTADKDGP
GSVFERELPDADVVISQPFWPAYLTAARIAKAPRLKLAITAGIGSDHVDLQAAAQHGLTVAEVTYSNSISVSEHVVMMVL
ALVRNYLPSYQCVLDGGWNIADCVARSYDLEGMQVGAGRIGSAVLRRLKPFDVGLHYTDQHRLPAATEQELGARYHPDAA
ALAGACDVISLHCPLHPGTEHLFDAAMLARMKRGAYLINTARGKICDRDAVVQALASGQLAGYAGDVWFPQPAPRDHPWR
SMPHHGMTPHISGSSLPAQARYAAGTREILECWLDGRAIRTEYLIVDQGRLAGAGAHAYTPGDTTAGSENAARFHP
>SEQF1086_CAE41803.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPLYDYACPQCGPFRAWRALREAGAPLACPQCGEHAPKAVTAPFLADMNPAVRQAHARNEKSAHEPTVASRPAPGHDHGH
GHGHAPVPAGLDPGPWVVSPHRSMVGHH
>SEQF1086_CAE41804.1 putative transporter protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLLGLTLLYVGAVLFLNGLWLLEKIGDKEIWIINIFSGALTLLVSLRLAFGEDATPLSVRAAALTLLFTFTYIWVALNRY
NGADGRGLGWYSLFVALTAVPVALQTLAGATTLWGYWLGLNWVAWAVLWFMFFLLLVKKRPIARATGILTVLEGIVTGWI
PGFLLLNGMLA
>SEQF1086_CAE41805.1 formamidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAQTAFHVEFNKAPEDQATKTHNRWHPDIPMVEWFNPGDEFRVECYDWTGGQISNDDSANDVRDVDLTRVHYLSGPFGVK
GAEPGDLLVVDLLDVGALPESAWGFTGIFARENGGGFLCEHFPDARKACWDFHGIYTTSRHVPNVRWPGIIHPGLIGCLP
DRALLERANKREAALLATDPNRVPPLLAPSYADTALMGQMSGEAARKAGAEAWRTVPPREHGGNCDIKNLSRGSRVYFPV
YVKGGGLSMGDIHWSQGDGEITFCGAIEMAGFLDIRVDLIKDGINKYGIVNPIFKPSPIEPHFAEYLVFEGISVDEHTGE
QYYLDAHVAYRRACLNAIEYLKKFGYTSEQAYIILGTAPVEGRISGIVDIPNACCTLAIPTEIFDFDIRPNAAGPSAKVG
KAKVAVTS
>SEQF1086_CAE41806.1 putative LuxR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDAKPAAAAAAQTEDRLLHVLYGTLNDDTQWQQVLAALCRRFATRAAALAHYDFDAGAGRILYQAPADGPLQAIYDQGRP
LNPWFLSKAPYLPGRILDSPELIAPEDFLQTDFYREILRPHGLFHRLCGVLARQRNHVWYLVLHRRKEQMPFDSADRARL
RTLMPHLMTVFEVRTRCAAQVRLAGLLARIVQAYLPPVLVLDRDGAVLHGEIAADALPAQLRLVDGRLATRDAALQKPLR
DRIRRMAEAAQAGKPGRASLALDEADGAAPIQLTLCALGPDTNAQGGQAGALVGLLISDPGQDARQAMRRFADHFALSPA
EEKVSALILQGMTPARVARSLHISEHTVRSHLKQIFRKTNTHRQAELMSLRERADY
>SEQF1086_CAE41807.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MCSSPGHTFSKPVREAITLVAGLGVAGDAHQGATVRHRSRVRADPGQPNLRQVHLIHGELHDALQQAGFNVAEGTLGENI
TTRGIDLLDLPRDSLLYLGGQAIVRITGLRNPCAQLDRYQRGLMAAVLERDAAGGLVRKAGIMAVVEAGGDVRAGDPIEV
VLPPPPHHRLDCVYGPRNRDRRAVPR
>SEQF1086_CAE41808.1 fructose-bisphosphate aldolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALVSMRQLLDHAAEHGYGIPAFNVNNLEQVQAIMEAAAETDSPVIMQASAGARKYAGEGFLKYLIQAAVESYPHIPVVM
HQDHGQSPAVCQGAIDLGFSSVMMDGSLKEDGKTIADYDYNVDVTKKVVDMAHKLGVTVEGELGCLGSLETMQGDKEDGH
GADGKLTMEQLLTDPEQAADFVRRTQLDALAIAIGTSHGAYKFTRKPTGDILSIARIKEIHARLPNTHLVMHGSSSVPQD
LLAEIREFGGDMKETYGVPVEEIQEAIKFGVRKINIDTDIRLAMTGAIRRFFAENPSKFDPREYLKPARAAAKAICVQRY
TQFGTAGNASKIKPLPLADMAQQYAAGKLAQVVQ
>SEQF1086_CAE41809.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSPAPAAGTPADIHTYTGGCLCQAVRFRATGPLLAAATCHCRECQYLSGGAPAHALLLPAGALRLERGAPREYHYRSAAG
RRVMRSFCADCGTPLFGHTEDAGYTVVRAGALDEPERFANQLTVWTASAPPWHAIDTAHPHFAGNAPS
>SEQF1086_CAE41810.1 phosphoribosylaminoimidazole-succinocarboxamide synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTSALHESSIKSLPLLGRGKVRDMYAVGDDKLLIVASDRISAFDVILDDPIPGKGQVLTELTDFWLRKLAHILPNHSTGI
QPEDVVAPDEVDQVRGRAVVVKRLKPILVEAVARGYLIGSGWKDYQASGSVCGIALPAGLQQASQLPEPIFTPAAKAEFG
MHDENVDFAHVVKEVGQEMAERIRDVTLRLYGEAARFAATKGIIIADTKFEFGLDDNGTLHLMDEVLTPDSSRFWPADGY
RVGISPPSFDKQFVRDWLETQPWDKTPPAPRLPRDVLEKTAAKYREALDRLLA
>SEQF1086_CAE41811.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVEIVLALTPRDFHKSMTTHADHRIWQDVYCPVTAMGAVYLKLTVLDGVPIVSFKEL
>SEQF1086_CAE41812.1 putative DNA-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKCPVCGAAALARDTRDVPYSYKGETITIAAVTGDWCPACGENVLDGAESARVSEAMLAFNRLVNARRVDPGFIVRVRRK
LGLDQREAAALFGGGTNAFSRYENGKTRPPLALVKLLRLLDRHPELLEEVRAD
>SEQF1086_CAE41813.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNYFVLLRYTRPSSHKGKRKGSDEMLMMLPFLSGALAVWFGILGKRRPCFALWLVTLAVFAVGAHRYMTGPVPLPLAL
>SEQF1086_CAE41814.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIFLRNPGRGSRIVNTLVLLAVSLLLLSALAWQWLDAEAPCPLCLLQRAALVLIGVGLLLNVRMGPSPLHYAMVLAPALG
GLTAAGWQLLSPDAGAAAPPWQGWAFLLFGAMLVYCTLMLAADRKWGDNALKKPVALPGALVMGLFLVAVLANAAGTAL
>SEQF1086_CAE41815.1 phosphoribosylaminoimidazole carboxylase catalytic subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGVIMGSSSDWEVMKHAVAMLQDFGVAHEARVISAHRMPQDMAEYGAAARARGLRAIIAGAGGAAHLPGMMAALTEVPVF
GVPVPSRYLRGEDSLLSIVQMPKGVPVATFAIGEAGAANAALHAIATLATTDDALHARLVAFRARQTDAARAMKVPPEA
>SEQF1086_CAE41816.1 phosphoribosylaminoimidazole carboxylase ATPase subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQSSTFDPIASGDWLGLLGGGQLGRMFCHAAQSLGYKVAVLDPADECPAGMVADLHIQAAYDDADGLARLAGRCRAVTT
EFENVPADSLRALAARCRVSPAADAVAVVQDRIAEKTFIAGQGIEVAPHAAICARDDLLAAPQALFPGILKVARLGYDGK
GQARIASREEALAAFDEFGGVPCVLEALLPLDYEISVVIARGFDGASMVFPIARNVHRDGILAVSSVTPGAADASHAARQ
VQATQAAQAIAQGLGYHGVLCVEFFVLGDGRLVVNEIAPRPHNSGHYTIDACVTSQFEQQARVMAGLPLGSADLLAPAVM
LNILGDVWFEPGAHAPREPDWSAALAVPSAKLHLYGKREARRGRKMGHVTIVAATPEQARDDAARVACALGMAAPL
>SEQF1086_CAE41817.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIPAAMNAADPAVAHAAACLLAGELAAFPTETVYGLGADAENPQAVARIYAAKGRPSNHPVIVHIAPEGDVDYWASDVPA
AARQLIQAFWPGPLTLILKRAPHIGAAVSGGQDSIGIRCPSHPVAQALLRAFAAGKPNGQGGVAAPSANTFGHVSPTRAE
HVRAEFPREVAAGMPVLDGGDAEVGIESTIIDLSRLDQGVGPVLLRPGHISAAQVAAVLGMPVARPDAAAPRASGTLKAH
YAPRTPLELLDAAQLPRALAAAPAGVRQAVVALAPAPAGLSADVHWRMAPAGPARYAQALYALLRELDRQGYARILVEQP
PRSGDWDAVNDRIGRAAAAFSLDTTDLPGT
>SEQF1086_CAE41818.1 putative extracellular solute-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRHIAMAAGALALALGAQAAHAGPTLDAVKKKGFVQCGLTDGVAGFSATNSKGEWEGMDVDICRAVAAAVFGDAGKFKG
TALSTQQRFTALQSGEVDVLLRTVTLTQTRDTSLGLAAVAASFYDGQGVLVRKALGVKSAKELDEATICVQPGTTTELNL
ADWFRANGIKFTPVVIDKVTEVVRAFESGRCDAFTDDASQLAAVRATQVAKPDDFEILPERFSKEPLGPMVRQGDENWLG
IVRWTLFALMEAEEYGITQQNVDEMLKSKNPNVLRILGVTPGAGKNMGLDEKWAYNAIKAVGNYSQIFERNVGKDSRLGL
QRGVNALWSQGGAMYPWPIR
>SEQF1086_CAE41819.1 putative transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTVAPEDSPLFVAALARGLTLLAAFSEGRPAMTLPELAEATGLTKSAAQRFAHTLWTLGYLRKNPDSKKFSLSPQSLQL
GMQYAQTSPLVLGGNPFLHSLNRTSQETCSLAEPDGLDMVYVARFATHKQMFVHMPVGMRIPMYCAAAGRAVLARLEPDR
ARRLLQQSPRAARTATTLTDLDALMAELAFTREHGYARSNGEYYPGDITISAAVLDNAGTPAGSVNISVPSSRWSFEEAQ
AVFGPQVLETAHAISASRTLGVLPPFYRMAPPSALNSD
>SEQF1086_CAE41820.1 putative arginase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGVPARRPAGEAALACVLGIPFDCGTHPFRVGARQGPDAIREQSRLLRPYDLARRAGVDNPVEFLRLLDLGNVACVPGDP
QASYPAIEQAVAQVLQAGAIPITMGGDGAVTLPQLRAVARRWPGVAVLHFDSHTDTYPIAGYNTATTFTRAAEEGLIDLS
HSFHVGTRGNSFMGGVIEYGREVGYTVIPYDDFDRDQAGTLARLRGQLGDRPVYLCFDMDIFDPSCAPGVCTPEWGGLSP
KEGLNLLRALSGLNFVAFDVNTVSPPQDVGGATAFLAASVMQEFCALAAAAVQAYPQGRPD
>SEQF1086_CAE41821.1 putative amino acid-binding periplasmic protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKIKAALGILATVGMLAHAGSAAARTLDEVRAAKSANVVTTASAPPHGFKNPASNQLEGIMVDVGAAVAKHLGVAMNLKD
VPFSGLIPTLTSGRADVMSAPLFVTPERAKVIDFSAPVYEWGEGLVLREQNPDDIKRFEDLQGRRIGVLVDSVQFNMIKD
MPDTKVSTYQDYSTLLADVRAGRIELGIIDPPSIIYQIRTKKIPGVKLATQYQPQKKWHVGLAVQKDNKALLDAVNVALA
EMKRNGELAEIGRKWGVADLISK
>SEQF1086_CAE41822.1 putative inner membrane component of binding-protein-dependent transport system [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNLETLRMYLTPLAEGTMWMLALFFCSAVLAVALGLLVCLCRLSKSRVLSRGARLYIDIIRGTPLLLQLFYIYYGMPELG
VVINAFVAGVLGLTLNFGAYLAELFRSGIQSVDSGQYEAARALGLNKVDRLRRVVLPQAVRTVFPALGNYALVLIKETSL
VAVISVYELMRAGEMLAGATFQALTVYTMVGAIYFAMCSVLAHLFRRSEKRLTVPGYWSGAGENHDISKA
>SEQF1086_CAE41823.1 putative ATP-binding component of ABC transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDACNQPAPVITLRGVSKWYGDFQVLRDLDLDVYQGERVILCGPSESGKSTTIRLLNRLEEHEKGEIVVNGITLDGELRN
IERIRADVGMVFQHFNLFPHLTVLENCTLAPMRVKGLDEGEAARRAMQFLERVRIAQLADKYPGQLSGGQKQRVAIARAL
CMQPRIMLFDEPTSALDPEMVKEVLDTMVELARDGMTMICVTHEMGFAREVGDRVVFMDGGSIVESDTPERFFSAPRSSR
AQAFLGQILG
>SEQF1086_CAE41824.1 putative thiamine-pyrophosphate-requiring enzyme [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNGADSLCDTLLANDIDVCFANPGTSEMHFVAALDRKPRMRCVLGLFEGVVTGAADGYARMADKPAATLLHLGPGLGNGL
ANLHNAKRARTPMVNVVGDHATYHVQYDAPLTSDVEAVAQPMSHWVGRIRDAASVAAQTSEAIQVARQEPGNVSTLILPA
DAAWTDLPDDTPAPQPVRQAPQAQVDAQAIRAAAQAIRSGQATTLLLGGAALRGRALAAAGRIAHATGVRLAAETSSRRI
ERGANRPPVVRLPYPVDLAVAFLKDVRHLVLVGSRSPVAFFAYPGKPSLLAPQECDQIVLAEPEQDLHHALEWLADELGI
PADAPQTRPAALTEAVPAEGRLTSAAVNRVAAALLPDNAIVCDESITQGREFGIYSVHSAPHDWLQLTGGAIGIGLPLAT
GAAVACPDRKVVLLQADGSGMYTVQALWTQARERLDCLTIIYANRTYATLHGEMKNVGVIQPGENAKRMLDLVDPHIDWV
QVSQGLGVEAVRVDTVEGFTQAMRAALARKGPFLIEAVI
>SEQF1086_CAE41825.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKFADLRAGMVITGGPLQVTEAEILEFARKFDPQWFHTDVQRAAEGRWGGLIASGWHTCALAMRMAVDAILHDSESFGSP
GLGEVSWRVPVRPGDTLTLHARVQGARVSASRNDLGIVNWAWVVDNQHGETVLELDATSLFDLSGDS
>SEQF1086_CAE41826.1 glutaryl-CoA dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSTPSFHWQDPLLLDQQLTEEERMVRDAAVAYSQDKLAPRVLEAFRHEKTDPAIFAEMGELGLLGATIPTEYGGAGLNY
VCYGLIAREVERVDSGYRSMMSVQSSLVMVPINEFGSEAQKRKYLPKLAAGEWIGCFGLTEPNHGSDPGGMETRATKTPD
GYKLTGNKMWITNSPIADVFVVWAKCVGGDFDGKIRGFILEKGMKGLSAPAIHGKVGLRASITGEIVMDEVEVSEEQMMP
GVSGLKGPFTCLNSARYGIAWGALGAAEACWHTARQYTMDRKQFGRPLAANQLIQKKLADMQTEITLGLQGCLRLGRMKD
EGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDVHALILGRAQTGLQAFY
>SEQF1086_CAE41827.1 putative acetolactate synthase large subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTANHSTPASRLGGHILVDQLAAHGVKHVFCVPGESYLAVLDGLHDASIDVTVCRQEGGAAMMADAHGKLTGEPGICMV
TRGPGASNALAGVHIAKQDSTPMILFVGQIERGMREREAFQEMDYRAVFGTQAKWVTEIDQVERIPELISRAFHVATSGR
PGPVVIALPEDVLVETASVPDAPRYEVIDAAPAAGQMDQLAQMLAQAKAPVAILGGSRWNAQAVQQFADFAQRHALPTAV
SFRRQMLFPADHPCFIGDVGLGINPALLKRIEQADLVLMVGGRMSENPSQAYTLLDIPVPRQKLVHVHPDSAELGRVYRA
NLAINTSPAAFCAALAQANGPSQPAWADDTQAMRASYLQWSDPAAIRTPGALQLGEVMAFLEKTLPADAIMANGAGNYAT
WLHRFHRYTRYGTQLAPTSGSMGYGLPAAVGAKRIWPQKTVVCFAGDGCFLMHGQEFATAVQYDLPIVVVLIDNGMYGTI
RMHQEKHYPGRISATSLKNPDFAEYARAFGGHGERVETTEQFAPAFERALASGKPAILHCLIDPETITPSTTLEKIRAAA
LKAQ
>SEQF1086_CAE41828.1 probable LysR-familyt ranscriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRNGIPNLSALQAFEATARLGSFSRAAEELSLTHSAVYRQVASLEDRLGVQLFTRVRRRIVLTDHGAEYAGRIRHHLDQI
EKDTFGLVSRTGMGRSIHIAVVPTLATTWLIPRLADFQRVQPDITVSLSVRTLPFQFKDQPFDGALYHGDGIWPGTQGVL
LFPERELVPVCAPELAERAPGRDDGALGGMMHLYLYSRPDAWCQWYAANQYAYGPQAAGGPRYDLFTMMLAAVQAGLGVG
LMPRFLVQDALDAGTLVMPVPQALSVSQGYYFGYPQRSERSGALKAFEVWLKSAV
>SEQF1086_CAE41829.1 integrase/recombinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSSAPLASQADLDAFIDAVWLEDGLAANTLAAYRRDLSAFAQWLENLACHPGLATGASLREAGKGDIEAWFAARHAESR
ATTANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPPRLPKTLSEAQVDALLQAPDLDTARGLRDRAMLETLYATGLR
VSELVSVKALDVSLNEGVVRVVMGKGGKDRLVPLGAEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQLV
KKYALAADIHAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHPRA
>SEQF1086_CAE41830.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKNRHVSETPATQLLRQRKVAFTEHTYDYVDHGGAGEAARQLGLDPHAVVKTLIMEDEGGHPLVVLMHGDREVSTKNLE
RQAGLKKVAPCQPEVAQRHSGYQVGGTSPFGTRKRMPVWVEASVLDFPQIYVNGGRRGYLVGIAPQALVDLLGARAVQVA
LP
>SEQF1086_CAE41831.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKKLLMLVGDYAEDYETMVPFQTLLAVGHTVHAVCPDKKAGDTVATAIHDFEGAQTYSEKRGHNFTLNHDFAKVEPQHY
DGLVIPGGRAPEYLRLDERVLDIVRHFDQAGKPIAAVCHGAQLLAAAGILQGRTCSAYPACAPEVRLAGGTYAEIGIDQA
HTDGNLVTAPAWPAHPAWLAQFLAVLGTRISH
>SEQF1086_CAE41832.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MCEIFIRANQRSYSVQARSLRLHGVATSVRLEQLFWDVLEEIAARDGMRVTQLIERLYDELVQYRGEAANFTSFLRVCCL
RYQVLQAEGRIPADATVPIRSLDAQAVLRGLPANLYDSRPLG
>SEQF1086_CAE41833.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41834.1 probable D-alanyl-D-alanine carboxypeptidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPPAAASPAAEAAALRSSTAYVQDLETSTVLFAKNENVVRPIASISKLMTALVVVDANLPMDEMIEITDDDVDTLKHTTS
RLRVGTVLSRGDMLHLALMSSENRAAHALGRNYPGGMPAFVAAMNAKARSLGMLNTRFVEPTGLSSENVSSPRDLARMLR
AASQRPLIHRYSTDTEYEVEINNRTQTFRNTNLLVRKPDWDIKVSKTGFINEAGECLVMLARINGRDMAIVLLDSQGKLS
RIGDAVRIRRIVQNDVAML
>SEQF1086_CAE41835.1 hypothetical protein BP1545A [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAVAAALARAVRVRARMVDLRVLPFLALAVFLLLADFFLAVLADFLLEAVLAGAFLAEAFLACWDLQAADLALVLHGSA
LAACAA
>SEQF1086_CAE41836.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTSEKPSLRILFIGTGVVLLAMGVRATFGLFMQPMDLAHGWGREVFSMAFALQNLVWGAACIGMGILADRYGSGRTIVL
GAVLYALGMIGTRFATDEATLYLTAGVLVGLGQAGTTFPVILPVVARSVPAAYRSTAMGIASAGGSLGQFLVVPAGQQLI
TGLDWPGALWVLSLLVAVGAPLAYFLRGKPGVHGGVQQSLGAAVRQAMAHPSFHFLSWSYFVCGFHTAFITLHLPAYVVD
AGMKASHGATAIALIGLCNVIGSFYAGKLGGVYSKRLLLAAIYGLRAFGMLLLLAVPLTPLVLYVFAGWMGLFWLGTVPL
TQGLIGQIYGLRYAATLSGIAFLGHQVGSFIGVWMGGAVYARTGNYDLVWWTGVALAVVAALLCLPVREQPLAQPAAARA
>SEQF1086_CAE41837.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDDFRTDFPSCTLRDLGELPAIDTLVLTVNNRLSRRLTLDLAAQLSSERQVSELPRIMPLSAWLADCVAELAFDERYEV
PAYRLSSFATQLVWREAIRLEEADRALLDADQAARLALDADLLVDEWQAHVPAGAETDEYRGFSRWRARYRAMLGELDAE
DANQGYERVLEALRQGALRAPRHVALAGFVDISPRFARLLRALADGGADVVAWRDAVREPAWPQRFEAADRGAEWRAAAR
WAADRLRADPRGRYAIVSPQLEAEAPFARRVLGQALAGQDAPLPFNVAVGRALDEWPAVRAALAWLALLAEVAACGAGEP
ALFGAALLAGHCAGDLQEGPRHAALDARWRRQALAHVGPADWQRGLEECPRLAEGWSQAMAIWQAGQRSDTCDAWAPRFK
AALTALGFPGERALDSVAYQVMGALGDLLAEFTALAPAAGRLDGRAAVRLLASAARAGSFQPQRDPSARLDVLGLLEAEG
GAWDGIWVLGLTDDVLPASPKPNPLLPLAVLRQVGAPRATPEREREWAEGMFMALRRCAPEMIASHAAMDGERELRPSPL
IVRAAPADWQPGTDAQVAALEQEILDDSQGPPLQAERQSRGGLDVLDTQARNPLWAFVRHRLGGRAMAPYADAATVSVRG
QFLHRALELVWRMLPDQEALHAAMAEGRLAALVEQAIGEAARTELAGYPAALRELECARAAAVLANWFDSEAQRQPFEVA
QIEQEHSWQRGALALKVRLDRMDRLADGRALIVDYKTGAAPGRPESDWARARPVNLQLPFYASVLADGADTEVAGLMLAQ
IHARQVSAQGLAADDLGIEGVTPVEQSKAFEGQPWPRILQRWRAAVEMLADEYANGYAANVALRQDDLKFCDAMPFLRLH
LDDEDA
>SEQF1086_CAE41838.1 putative nuclease/helicase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTEPERLPHDHAARRQALDPSRSFLVQAPAGSGKTELLTDRILALLATVTRPEEIVAITFTRKAASEMHARVLHKLSLGA
GEPPRSAHERRSWELARAALARDQEQGWHLLDHPARLAIRTIDSFCAGLVRGMPWLSELGGMPDIADDARAHYEAAARAT
LELADEHDAVRALLAHLDVDVQAAKDAIAAMLGQRDQWMPLLQFGLDRDGLEASLAEALEHELDSLCGQLPRGWSQALCG
PARLAAAALAGSGDARLAALQDWDAPLPPMAEALDQWRALAHLLLTGTGALRSPKGVNKNLGFPAGCDHKEPFTAWLAAC
DGGAPWVRALAAVRDMPDAHFSDAQWDVLSAQLTTLALSVAQLRVQFARAGEVDFIEIAQRAAYALGSGDDPGELLLKLD
ASIRHLLIDEFQDTSQGQIDLLATLTAGWQDGDGRTLFLVGDPMQSIYRFRKAEVGLFLQVAERGVGQIRPGFLQLTDNF
RSQGGVVDWVNRVFAQLLPRANDADSGAIAYSPSTAFHETAPGEAVLFHPAWECGDAASAERQAEDIAVGLVRAALAEHE
GSRHPVAILVRARSHLGSLTRRLAQEGIPCRAVELVPLGLRPVVADLVQLARALAHPGDRLAWLSVLRAPWCGLTLTSLQ
RLFGADQLTPVPTLLERALRGAARSEGGQGSLFDAPAPGCLAEQALAPDEYRRLRAVAAILLDRANDAGLLPLAAWLEQL
WRRLGGPGLYAGSSAASDAESLFQLIERLAPHGGLDAGLLDTAVARLFAAPQATGEQGTVEIMTMHKSKGLQFDTVILYG
LHRAPRGDQAPLVRFEQSRGRVLLGPIKPRAETEADPVSRYLGAREARRAAYETDRLFYVAATRARQRLHLVAHVAVDAA
SGQARTPASASLLGRLWPHLSVPQPPDVAQDQAAATGEQPALVGEPLRRLAGAGLASLAARTLPREAAAGVYGGGQGAEH
PSWQLEAGYDAAVGTLAHAWLARIGGDGPQHWSADALAVRLPAMRRQLTRAGIPAGQADAAAQAVLDTLQSTLDDERGRW
LLGQARARREWPLIDAAGRVSVIDLALSTEDGWLIVDYKTGRPHEHETPEQFAIRMRQRHGEQLMRYCAQVTALDGRPAR
AALYFPRARAWIDL
>SEQF1086_CAE41839.1 DNA polymerase III subunit Tau [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTYLVLARKWRPRSFDTLIGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTLSRILAKSLNCENGITSKPCGQCRACT
EIDAGRFVDYLELDAASNRGVEEMTQLLEQAVYAPGAGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQ
KIPVTVLSRCLQFNLKQMPPDAIVGHLQAVLGEEQIGFEVPALRLIGQAAGGSMRDALSLTDQAIAYSAGNLSEEAVRGM
LGTIDQRHLVRLLDALASGDAAGVLAVADELAVRGLSYAGALADLAVLLSRVAIEQRVRGALPQDDPLTEDITRLAAALH
PDAVQLFYSVAVHSRGELTLSPDEYAGFVMACLRMLALNGEAGPATAVQAPRADTTPRAAAPAAAAPAETRPEPTPAPAL
APQAAAAPRAVARSESKPQPAPEPEPEPEPAPRPAATPVAATPPAVAEPEPVAAPAAQARAAEPAPAPVPPWEDLPEAVA
APAPAQPAAAPAPVAADDDGPPAWVDEAIPDEAGGGFVPEHSFTADPDDEFETLAPAAAAMPAPRAPTPRRESGGRGRAA
RSRLADMSPTGWPELAARLPVTGLAAELARQSEWAGVQGDAVLLRVAVRTLAESESRVRLQTVLCEHFGQGLRLEIEVGV
TGDGTAHAVAQIERAARQQAAEDAVAVDPFVQALVADFGGRVVPGSIRHVDNPPAA
>SEQF1086_CAE41840.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMKGQLAGLMRQAQQMQENMKKAQDALAEIQVEGAAGGGLVKVTMTCRHDVKRVAIDASLLGEDKDMLEDLVAAAFNDAL
RKAEATSQEKMASVTAGMPLPPGMKLPF
>SEQF1086_CAE41841.1 recombination protein RecR [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDPQLPEPEPLIALIEALRRLPGVGVRSARRMAYHLLQHDLQGADMLGRALSAAVQHLRHCARCNSFTEDEVCATCANPK
RDPGLLCIVETPADQNMIESSHGYRGLYYVLMGRIAPLEGVGPRELDFQRVIERACDGVVQEVILATNFTAEGETTAHFL
DDALSERGLKVTRLARGVPAGSELEYVDAGTIAWALMERRST
>SEQF1086_CAE41842.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE41843.1 hypothetical protein BP1553 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNFLEASGWSVQPAGEHAIRAISPMTLGLDGQHAAFFIVHPDAHTFYLTDACKTALHAATFGIELVAKRLEVLNQTPGV
SLARFDKAGAIVAQGPNEQLQDALWDAVKLAMALSFQCAKWMPKFSRLRFRAQVGRTLAEAVGANRMVKGAKAQGSSGHT
ADFAFAVRSATSTSMTYIEPIALKAGRKVDWTQVYQTHGKMSDVKMADARNARLVILEDGATAEEFKKAVAILEQSAAVR
TLAKTRDWQEVFAT
>SEQF1086_CAE41844.1 hypothetical protein BP1554 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPLLARAMHGRRRIFEFNRVPMANNVEPLIAPDEVQEILAEPKETTKPISWAHKPAASNSQWQEFSCACRLKGDVREDIL
FRITYRGARTAVFGQATIFLPEAFGASLFVGPHRVFGVDTDDSFHTSMVGENLPQFRKALADRSHQHIWVEAGEGYAEPV
VPALESIGALVDYFLPRANLTLTGGFAHPLKGRQIELIL
>SEQF1086_CAE41845.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRMDDSRESQNIEDRRAAGPRLGGKGRIGIGTIVLALVAMYFGIDPSVVLQMAEGPATYEQAPAGAPPANDPQARFVAKV
LGETEDTWGAIFTQSLNRNYVPPKLVLFRGATPTACGTGQAAMGPFYCPGDSKVYIDLGFFDEMERRLNAPGDFAQAYVI
AHEVGHHVQHLLGVAEQVDRLRQRNPAQANALSVRMELQADCFAGLWARRADQARNILESGDIEEGLNAASAIGDDTLQK
KSQGYVVPDAFTHGSSAQRVRWFKRGLESGDLRQCDTFGAAQL
>SEQF1086_CAE41846.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALLLTLHPANPQPRLIKQAAQWLSDGGLVAVPTDSSYAVVAPLDDKAAADALRRLRGLDERHHLTLLCRDLAEIGQVAR
VDNKQYRLLKAATPGPWTFILEATREVPRRVSHPSRKTIGIRVPAHAVALALLEQVGAPLLSTTLIPRDEEDALNDPEAI
QERYQHELAAVIDAGACPQTPTTVVDLTGAEPAVLRRGGGDPAALGLD
>SEQF1086_CAE41847.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41848.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPSMEIDRRAFLALALALAGGAAPRALWAAAQADPLYLAARRRGERYEAVVLGPDGRDRLAVPMPARGHSFALDAPRRRA
VVFGRQPGFFAVAFSVDGARPPQALAAAPQRHFFGHGLFLPDGQRMLATENDYEAGRGVLGVYDASAGGGYRRLGEFDTA
GIGPHEALLLPDGKTVCVANGGILTHPDYGKLELNLDSMRASLAYLDASDGRLLEKVELDPALHRLSIRHLAVAADGAVW
FGCQHMGPRSERPALVGRHRRGRAIELYAGPAETLRGFRNYIGSVAAGDGGRVIATSSPVGGQVAYWDSATGRCLGVTAL
ADGCGVAPLETGGFLISSGLGAMVHGGPDGGAQAMLEAGGQVSWDNHLRRYAA
>SEQF1086_CAE41850.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQAITAPTADFSAAESFETMQAGAATVKKLLNADIFSHPSANMTFEGRQRFQVGNGLFRKLWVSAPASTQASDGLGPLFN
ARSCQACHVKDGRGTVPGFDPDPLERSDAVALLLRLAVEPSSEAERRLLAEGKVPCLPDPTYGSQLQNFAVAGLPAEGRL
EIEYEPVSVALNGGETATLMKPAYRIEDPGYGPLRPDLHLSPRLAPPMIGLGLLEAIHEADILANAAADHGDGVSGKPNW
VRDVRTGQKVLGRFNWKAGQPTVEQQSAAAFSNDMGLSTPLFPSHFGDCTPAQAECFKMPHGAQPHLGEHEVPGHLMDFV
TTYSTNLAVPQRRDADDERVLAGKKLFYQANCVACHVPKYVTRRDAAQPEHRFQLIWPYTDMLLHDMGDGLADGVSEEQA
NGREWRTPPLWGIGLTRLVNPSATWLHDGRARTLLEAVLWHGGEAQAARDRVVAMSPGERADLIRFLESL
>SEQF1086_CAE41851.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MWMRKLLRKTVLALALGVATPLAVAAAQPKAVVQTYSDIALAGYQDALASAQALRTAIDALIAAPSAQTLQAARQAWLAA
RVPYQQTEAFRFGNPVVDDWEGRVNAWPLDEGLIDYVDAAYGTESDANAFYTVNVIANARISVGGKTIDASKITPQLLSE
VLHEADGNEANVATGYHAIEFLLWGQDLNGTGPAPKDRTGTPQERHAGDRPHTDFDPRQCTGGNCERRVQYLKAVTDLLV
DDLQEMVDNWKAGGAARKVVEEDPKAGLIAMMTGLGSLSYGELAGERMKLGLMLHDPEEEHDCFSDNTHNSHYYNQIGIR
NVYLGNYARIDGKTVSGASLSDLVKARDAKLDAEVRAKLDATVQAMEAMKQRAETVETYDQMIAQGNKEGNAVVQVAIDR
LVDQTRSLERVIAALELGDIELEGSDSLDKPDAVFK
>SEQF1086_CAE41852.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMSAVPVSLPVTMLVTRHISPDRYGDFLAWMRQGEILAAGFPGFLGSGVLQPPEGGDQYQIVLRFDSEASLARWEQSLPR
RMWLERGAALVRASHARRVTGMDSWFGASAGAPPRWKQAVSIWLVYFPMLLLFSTALDAQLSALPLFWRVLATTLCMTPV
LSFLCIPLVTRVLRGWLHPRAVGAAD
>SEQF1086_CAE41853.1 putative chromate reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTYKIAVFVDSLRAASFNLRLARALEKLAPANFEFEHVSLGDVPLYNQDHENDMAAPAAKLKQQIADAHGILFVTPEHN
RSIPAALKNAIDWGSRPWGHNSWIGKTAGIVGTSPSAAGTAMAQQHLRNILAAEGVNVLTTPEVFLQFKEGLIDEQFNIT
NEDTRKFLQGWLDRYVAWVTRLAG
>SEQF1086_CAE41854.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSHVYKQIELVGSSAVSSDDAIAQAIARASDTLRHLDWFEVTETRGHIKDGKVAHWQVSLKIGMRLEADD
>SEQF1086_CAE41855.1 mismatch repair protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSTPKQTTGDALAGHTPMMQQYLRLKAEAGPLLLFYRMGDFYEMFYEDAERAARLLNLTLTKRGNSNGTPIPMAGIPVH
AMEQYLARLVALGESVAICEQIGDPAAAKGPVERRIVRIVTPGTLTDEALLPAKADRALAAVCVTGKREPRAGLAWLNLA
SGAFHVTECAPAQLESELHRIAPAELIQAESAELHMAFEGARTRVPDWHFEADGARAQLLAHFKTDSLGGFDVEDMPAAV
CAAGALLRYAARTQSQALAHVQTIAAERSGQYVLLDPVTRRNLELTQTLSGEESPTLFSLLDGCRTPMGSRLLRRWLHHP
LRENEPVLARQHAIATMLTARQEGEQTFAAAGLLETLRDALNAFPDIERIAARVALRSVRPRELASLRDALAALPALHAS
LTPLSGSPRARELAAQLAMPPDIGELLARAVASEPAVAIRDGGVIAAGFDSELDELRALATDGGDFLVQLEARERERTGI
GNLRVEFNRVHGFYIEVTKGQTDKVPEDYRRRQTLKNAERYITPELKTWEDRVLSAQDRSLAREKWLYEQLLDALAQYVR
PLSQCASALAELDTLAALAEHARRHDWVAPELIDGAEIDIEAGRHPVVERAIERFTPNGCRLDQTRRMLLITGPNMGGKS
TYMRQVALIALLARTGSFVPATRARVGRLDRIFTRIGAADDLAGGRSTFMMEMTEAAAILAASTPASLVLMDEIGRGTST
YDGLALAWAIAYRLLTHNRALTLFATHYFELTRLPAEQPTAANVHLAAAESAGGIVFLHEVREGPASRSYGIQVAQRAGV
PAAVIRQASRELERLEAQGAPTPQLGLFAAALDADVQSQAMTEQAEDAAALAQLRDQLVAIDPDSLTPREALDALYRLKQ
HLT
>SEQF1086_CAE41856.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNPATALALLGGLAPADFMRRYWQRKPLLIRQAIPGFKPPASIAALRQLARRDDVEARLIWREQGQWNMENGPFARLPKA
GEPDWTLLVQSVDLHHDAVSALLQQFRFIPDARLDDIMISVAGDGGGVGPHFDSYDVFLLQASGRRRWRYGRQKDLSLQP
DLPLKILSRFEPEEEHVLEPGDMLYLPPQAAHDGVAEGGDCMTISIGFRAPSQAMLARGLLEAAADQVMARVGLLGGPYG
EPPLPGARLDGLYRDPGQPAVAHPAAVPDGLVEATLATLDRLRFDEALAARFLGCWLTEPSQLSVFDAGGDQVDLEDSWP
ASGALVLDRRSRMLYRGRQLFINGEAASVAAEPALRHLADARALACDDPRCARLSDEARSCLADWLDAGWLRYQP
>SEQF1086_CAE41857.1 serotype 3 fimbrial subunit precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKFSYPALRAALILAASPVLPALANDGTIVITGSISDQTCVIEEPSTLNHIKVVQLPKISKNALRNDGDTAGATPFDIK
LKECPQALGALKLYFEPGITTNYDTGDLIAYKQTYNASGNGNLSTVSSATKAKGVEFRLANLNGQHIRMGTDKTTQAAQT
FTGKVTNGSKSYTLRYLASYVKKPKEDVDAAQITSYVGFSVVYP
>SEQF1086_CAE41858.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRMNKRHAGASALMALALLAGCSDVNQLLGNEESVDYKSTRRGDPLSIPPDLTQANNDPRYKAPASGTATYSQFQQQGLQ
QQASAGQNTNVLPERADMRVERDGDLRWLVIERPPEQLFSKVVDFWTDTGFTVSVNNPQAGIIETDWAENRAKIPESWLR
QVLGSVLETAWDSGEREKFRTRVERVNGHTEIYITHNQMLEKRVGSDGGQVQWTHGKEDPGLNAAMLARLMVYLGTDVDA
ARKLVAQAEAAPQAPKVQSVRAEGAMLVVDESFDRAWRRVGVALDSGGFAVDDRDRSAGEYFVRYVDTDTGAQNEQPGFF
SRLFSSDKKAQAPQYRIRLTGSGTQTQVTVLDANGQRDSSATAQRMLSVLKDKMV
>SEQF1086_CAE41859.1 dihydrodipicolinate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQFQGSLVALVTPMQPDGSLDYDAYRSLIDWHVAEGTDGLVVVGTTGESPSVSMEEHAELIRVAVEHAAGRIPVIAGVGA
NSTDEAIHLARHAKAVGAQAGLSVVPYYNKPNQEGIYRHFRAVAEAVDLPTVLYNVPGRTVADMSNDTVLRLAEVPGIIG
IKEATGDIARGALLLREAPAGFQVFSGDDPTAAALILLGARGNISVTANVAPRLMHELCTAARGGDVPRTRELNARLARL
NKALFIEANPIPVKWALAQMGHTALGYRLPMVELSEQYHSLVRTALQEVGLL
>SEQF1086_CAE41861.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41862.1 glutamine-binding periplasmic protein precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIKAKVAAVLIGASAALLGAVSTASAQGRELVVATDTAFVPFEFKQGNTYTGFDIDLWAAIAKELNLKYKLQPMDFNGII
PGLQTKNIDAALAGITIRDDRKKVIDFSDPYYESGLAILVSEKNDSIKAAKDLSGKSVAVKTGTATVDFMKSQVPDAKLK
LFPNIDNAYLELATGRVDAAVHDTPNVQYYANTAGKGRVKVVGTVKSGDFYGIAFPKGSELVPQVNKALATLKANGQYDA
IYTKWFGKQP
>SEQF1086_CAE41863.1 glutamine transport system permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDFDWSVIGTALPNLLDGTLMTVKITFWGLVGGFVVGALIGVARAYGPLWLAGLAQVYVAVIRGTPIVVQVMFIYFALPL
MIEGMRVDAVAAAIATLIINSGAYIAEIVRGSLLSVHKGLKEAGQAMGLPFYKILLYIIGPVAFRRMIPPLGNQCIISLK
DSSLFIVIGVAELTRQGQEIMASNFRAVEIWSAVAIVYLILTGTMALGLRMLEKRMRIL
>SEQF1086_CAE41864.1 glutamine transport ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSMVEFHNVTKKFGDSTVLDGITLDIDAGEVVVVVGPSGSGKSTFLRCINVLETINDGDLLVGGQSVKGDAAQVREIRRE
AGMVFQQFNLFPQMTALENVMFGPVHTRGAARAEARRQAEELLGKVGLAERMNHYPSELSGGQQQRVAIARALAIKPKLM
LFDEPTSALDPELRHEVLKVMRDLAEEGMTMIVVTHEMEFARKVGSRLIFIDCGKIAHDGPPAELLSNPPSQRLKDFLQH
VS
>SEQF1086_CAE41865.1 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAFPGLKYASSGLLAALRLGRRTGKKGRTPPSPSPGAQEAVDAAASPVASLAPLTEIISTYLDPKEVERVREAYRFADQA
HLGQFRASGAPYISHPIAVTEICAGWKLDANALSAALLHDVMEDQGVGKHELAEKFSPEVAELVDGLSKLDRLDFATKAE
QQAESFRKMLLAMARDVRVILIKLADRLHNMRTLDAVNPEKRRRIARETLEIYAPIAHRLGLNLLFRELQDLCFAAMYPN
RYQVLYRAVLAARGNRREVISKIEDAVRAALPAAGIEAEVTGREKTLYGVYRKMTEQKKSFSEVLDIYGFRVIVHTLPEC
YLALGTLHQLYRPVPGKFKDYIAIPKVNGYQSLHTTLVGPYGTPVEFQFRTRDMHHIAEEGVASHWLYKDADLTLNELQK
RTHQWLQSLLDIQSQTGDSGEFLEHVKVDLFPDAIYVFTPRGKIISLPRGATPVDFAYAIHTDIGNQAVAAKVNGEFVPL
RTELSSGDTVEIITSPASRPNAQWLNYVRTGRARSEIRHYLRTVKYEESVAFGERLLEQAMIELHLPVPSTDDPQWDKLA
RSSGTSSRDEILADIGLGKRLAAVVARRFAPEHDLIATTAAAVDQITSARAAPILIQGSEGQAVQLAPCCGPLPGDPIIA
GMRLGHGLVVHTSDCPVALRARAREPERWINVAWDAQTAKHLPTRLDIVTRNERGVLGRLAAEVTAADANIVHVTMHDDA
VSTVSLHLTVQVDSRKHLAQVIRAIRHVPQVQKIVRVKG
>SEQF1086_CAE41866.1 DNA-directed RNA polymerase omega chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARITVEDCLNQIPNRFKLTLAATYRARELVQGHAPRLDSKDKPTVTALREIASGLTGLEMLRKVPT
>SEQF1086_CAE41867.1 guanylate kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAPSGNVFMVVAPSGAGKSSLVRALLDRDPSLVLSISCTTRAPRPGEQDGREYRFVDQAEFARLRDAQQLLEWAEVHGN
FYGTPRDRIDEATRAGHDVLLEIDWQGARQVKQRYPEAIGIFVLPPSIDELESRLKARGQDAPQVIARRLLAAGGEIAHA
PECEYVIINQEFSVALTELVQIISAARLRFSSQAVRNAQLFSQLGIPAAH
>SEQF1086_CAE41868.1 putative cytochrome C [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKHALIHRLALASLLAAALPAAPALAADAPPAFTPPAADAIPDNEFGKVVREGEQIFLHTPQRAAKFVGNDLTCASCHLD
AGRRADSAPMWAAYVLYPAYRAKNGHVNTLAERLQGCFRYSMNGESPPADDPTLVALQSYMYWLASKAPTGVKLAGRGYR
KLPAPPQKPDYLRGKTAYAQYCAVCHGAEGQGQKNGRHWVFPALWGEHSFNWGAGMHQIGNAAGFIKANMPLGQAGLLSD
QEAWDVAYFMNAHERPQDPRYQGSVAQTRAKYHDSDDSLYGMEVNGHLLGSAAPPSGGKLRAAGK
>SEQF1086_CAE41869.1 probable cytochrome C [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHPHRLVRCRWPVLSALAVAALCSPAAHAQAPAPADAARIASQGADGVAACVTCHGAKGEGNPAAGFPHLAGLGSGYLYE
QLTALANGSRANPVMAPVAKGLSDAQRQALAEYYAGLSAPFDADRLAATHLGEPAKADTGAWLAVRGAWDRNVPACNQCH
GPGGIGVGTAFPALAGQSAAYIAGQLRAWRQGQRPPGPLALMPAVATRLSDAEIDAVSAYYANLPKQAAAPRPEAAK
>SEQF1086_CAE41870.1 putative oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQANANSGVKVALVTGAGTGIGRAVALEFLAQGYRVVLAGRRREPLEQTRIAAGEDGVRALVVPTDVAREESVRELFDET
QRAYGRLDVLFNNAGRGAPAVPIEELPVETWRDVVDTNLTGMFLCAQAAIRLMKAQQPQGGRIINNGSISAHAPRPFSIA
YTATKHAVTGLTKSISLDCRPYGIACGQIDIGNAATEMTERMAAGILQADGSTRQEPRMDVAHVAHAVAEMARLPLDTNV
QFMTIMATNMPFVGRG
>SEQF1086_CAE41871.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTPPTRKARLLSLSLPAFLTAPLLALGLSLSPDTAQAALSPKARPSLQGLRLAGEPTVPTLRDRVVQAGLDAIGTPYSWG
GDDPADGFDCSGLVLFVYRHTAGLELPRTARAQRGAGRTVARKNLRPGDLVFFATRGRGVTSHVGIYIGQDQFVHAPTRG
SKVRVDSMDNRYWNKRFVGARRYLDTPAAGGTLLAASEN
>SEQF1086_CAE41872.1 putative nucleosidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPSDYSIAQLHCPDPVPFEAFDSAVAATDRLIELYRRNTGFVRELFHEVVGGRELSGRVRAYYPAIRIGVQTYDPIDSRL
SYGHVAEPGEYQTTITQPHLFRDYLIEQIGLLLQNHRVPVEVGESDMPIPLHFAFPDGTYVEGEHIENLRRPLRDLFDVP
DLAVTDDAIVNGSWRGQPGEPRPLAPFTATRVDYSLHRLQHYTATAPTHFQNFVLFTNYQFYVDEFCVWARGLMASGGGD
YDALIEPGNRITRRGDQAPVEAAAVRLPQMPAYHLVRPNHSGITLVNIGVGPSNAKTITDHIAVLRPHAWLMLGHCAGLR
DSQRLGDYVLAHGYVREDHVLDADLPTWVPVPPLAEVQVALEQAVEEVAGLSGWELKRIMRTGTVATIDNRNWELRDQGE
LVQRFAQSRAIALDMESATIAANGFRFRVPYGTLLCVSDKPLHGELKLPGMASAFYRRQVNQHLEIGIRALERLREMPPE
RLQSRKLRTFMETAFQ
>SEQF1086_CAE41873.1 putative DNA-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTAFNNIRQGLSEAIAHAKGNVHGMRVHRPRQVDVKAVRAKVGMTQEQFAAQFGFSPATLRHWERGDRTPRGAALVLLN
VIDRNPQAVIEALA
>SEQF1086_CAE41874.1 hypothetical protein BP1585 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPLYLLALFAKGDKANLTKAERNELAGLVDVLVNIWKGRAKS
>SEQF1086_CAE41875.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHGIAELPTYIRLAGKLLGPQERQDLIGYLAVHPEAGDIMEGTGGVRVIYY
>SEQF1086_CAE41876.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIRSMTAFGNARADLEQGSLALELRSVNSRYLDLYFRLPDELRHVETPLRELLTAKLARGKVEVRVSYTRAASTELSTLD
PQWLRSLAAQLDNARAVLPEVAAPRLVELFNWPGQRGNDALDPQAWGAACMQAAQQALAQMQEGRAREGERLAAMMRECA
DGVGRIVDGVETHLPQLLADHREKLALKLREAVESAFPGGFAHITGPELSERLTQEATLFALRIDVAEELSRLRSHLEEL
RHLLGDGPAKSDAKRGGSAGKRLDFLFQEMNREANTLGSKAGSLEVTRAAMDLKLLIEQMREQAQNLE
>SEQF1086_CAE41877.1 ribonuclease PH [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTSAADTLSRPSGRAVDALRPFSLERGFTRYAEGSVLVRAGNTHVLCTASVLEKVPPFLKGRGEGWVTAEYGMLPRATH
TRGDREAARGKQSGRTQEIQRLIGRSLRAVFDLRLLGERTLHLDCDVLQADGGTRCASITGAWVAAADAVALLMQRGDLA
HNPIRDAVAAVSVGLVDGRAVLDLDYQEDSACAADVNVVMTGSGAFVEVQGTGEGATFTRGELDTMLGLAEGGIAQLVRA
QREALQ
>SEQF1086_CAE41878.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTMIPSPSDHPSARLAEFTAGLRYEDIPPAVLRRAEDLFLDSLASILAGAGAPPVQAIARYAAAMGPADGPSQNLVTRTG
TTPLFAAMVNAAACHVVEQDDVHNGAVFHPAAVVFPPALAVAQALGRSGRDLLTAAVAGYEAGIRIGEFLGRSHYRIFHT
TATVGPLAAAVTVGHLLRLDAAQMLHALGSAGTQSAGLWEFLRDAADSKQLHTAHAAAAGITAAYLAQDGFTGAQRILEG
AQGLAAGMSSDADPSRLLDGLGQRWTLAETSFKYHASCRHTHPAADALQHVMREHGLRAADLAAVETLVHQSAIDVLGPV
TAPATVHQSKFSMGTVLALIALRGHAGLTEFDAAPGDAEVAALRDKVRMTLDDEVDRAYPRRWIGKVNVTTTDGRRLHGR
VDEPKGDLGNTLSRPEIEDKVARLARYGGHATESEVRALIDRVWRIAEQERVGKLLSE
>SEQF1086_CAE41879.1 probable transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAHFDLTDLQLLVHIGDWHSLTRGAEKSHLSLPAASTRVKNLEEHFGTQLLYRTSQGVTLTPSGEAMLRHARTVMQQVE
QMRGDMQEFARGVKGHVRVLANTTAMTEFMPAVLARYLAAHPDVNVELRERLSYLVVRAVADGSADIGVVAGCAPDQKLQ
FIPYRKDRLVVVTPAGHRLAAEESVAFADTLADDYVGLSEWSAIHPFLVQAAASLGRTFKFRVEVGNFEAVCRMIESGVG
IGVIPESAALRYARNLDIALVGLTDEWAVRELQICVKNLDSLPVFARELVETLVADGDAAG
>SEQF1086_CAE41880.1 methyl-accepting chemotaxis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRKKLKLAAALSATLAFFVLLFAAAAGAGVAVLRDNQAAIEALGRGNIERASDLGDTTSWLFQARAVLADAKTYMEGGLE
EQRDAALAQAATLLEQVRASQERLRANPEMAAQGASLYDEVLAGYDALAVQALAPLHAALKGWNGIEANRLAERALPQAA
ERYIEAVDAFQGYAREQGRAAVADAARVLERMVLGAAALLALVAVLAVVIRLGFRRAMLRPLTEAGRHFDRIADGDLTAA
IAARGDNEIGALYSAMRRMQGGLTRAVESVRHGVEEIHTGSGEIAAGGVEMSGRTARQAGALQEAAASMAELAGTVRATA
EHADQASRQAAGATELARQGGTAVAQVVASMRDIASGAQRIAEIVGLVDSLAFQTNVLALNAAVEAARAGPQGRGFAVVA
GEVRSLAQRSAQAAREIKGLIDDSSARVASGVQQVNLAGATMGEIVQSIDRVTQLVAGISEASATQAAGIASVNLAVADA
ERATQENAAMAEQTAAAAASLEAQAQALRQAVAVFRLAGAAPRSGGAGGQLVALDQQRQVAVLDLLLDAGGGRGEVLRAN
VAA
>SEQF1086_CAE41881.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MISSSAADLHADAGLAAILQGGLLNPCYQPVADLAQDRIFGHESLIRGPHQSVLHMPDALFAAARRDGLHAELELASLQA
GARRFIELDSPGNLFLNLSGAVLVACWRHYGSGLPVMLLADSGLAADRVVIEITEYDPVGGDLPALNQALACLRASGMRV
ALDDYGVGNASLQLWAELAPDLVKIDRYFFNGISRDERRLQLVRSMVSTARQLNSTLVAEGIENADDLRTVYELGTRYAQ
GWFLGRPENEPRTDLPTAARASLQPACATQPTRIPGHTALALRVEAPPVMLARHTNDDVQRLFQEHRHLHAVAVLDTDSR
PVGIINRRDFSEHYAQRYTRDLFGRNPCSTFMNPDPVLVDVHTSIDQLSHVLLSDDQRYLADGFVITRGGRYDSLGTGEA
LVRSVTEMRLEAARYANPLTSLPGNIPISQHIAHLLDHALDFVVCYADLDNFKPFNDVYGYWRGDDMIRLCADSIKRHCD
ARRDFVGHVGGDDFVVMLRSTDWRLRIERIIAEFNLRALDLYDDQGRHDGGIRAEDRYGVLRFFPCVTLGIGALEVSPVE
LGSHVRPENLASAAARVKQQVKHGNLALLVQRYQLPARAA
>SEQF1086_CAE41882.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAEILNPNLRRVVLASNNAGKLREFSALFAPLGIELVPQSELGVSEAEEPHATFVENALAKARHASRHTGLPALADDSG
LCVVALGGAPGVHSARYAQQPGGARSDAANNALLVRELAAAGDRRAWYVALLALVRTENDPCPLIGEGLWHGEIVDAPAG
EHGFGYDPHFYLPQQGCTAAQLAPEHKNRISHRAQALAQLLDKLRATGPVDRP
>SEQF1086_CAE41883.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE41884.1 putative porphyrin oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAITIPIRNLGGPAAGARVLAPAGATLTSLPPLSVYVHVPWCVRKCPYCDFNSHAAPGEIPERAYLDALRADLEQAVPEV
WGRQVISVFIGGGTPSLLSAAGLDELLAMLRACLNLLPDAEITMEANPGTAEAGRFRDYAASGVTRLSLGIQSFDDAQLS
RLGRIHDAAQARAAIAMAQQTVERVNLDLMFALPGQELEQCRADLRQALAFGTEHLSLYHLTLEPNTVFAKYPPELPDDD
ASAAMQDMVEETLAQAGLARYEVSAYARRGARCRHNLNYWEFGDYLGLGPGAHGKLSFHDRIERQARLRNPDSWMQRAMA
RDGSHVAESRVVGAGELPFEFMLNALRLKEGVAAPSFGERTGLSLAAIAHQLEAATRRGLLDADPTRLRATALGWRFLND
LQEMFL
>SEQF1086_CAE41885.1 glutamine synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MASPKDVLKQIADNEVKFVDFRFTDTLGREHHVSVPTSAVDEDKLESGQAFDGSSIPGWKGIEASDMLLIPDLDTANLDP
FREEPTLILSCDVVEPSDLKGYDRDPRSLAKRAEAYLKSSGLGDTAYFGPEPEFFVFDGVTWNTDMSGTFVKIKSEEAPW
SSGLEFEGGNMGHRPGPKGGYFPVPPVDSFQDMRSEMCLLLEQMGVPVEVHHHEVAAPGQLEIGTKFSTLVQRADWNQVM
KYVIHNVAHVYGKTATFMPKPIVGDNGSGMHVHQSIWKDGQNLFAGNGYAGLSEFALYYIGGIIKHARALNAITNPGTNS
YKRLVPHFEAPVKLAYSARNRSASIRIPYVGNPKARRIETRFPDPLANPYLAFSALMMAGLDGVQNKIHPGDPADKNLYD
LPPEEDAKIPTVCASLEEALAALDKDREFLTRGGVFSNDMLDAYIELKMGEVTRLRMTTHPVEFDMYYSL
>SEQF1086_CAE41886.1 nitrogen regulation protein NR(II) [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPPMTNVDAFDLLATSVFLLNERGHIEYANAAAEDLFGRSRKQLRGLSAATLFDNPEDLQSAIDSAAAGKFADVRQLASL
RRVVESVEVTVTTVSLSGQAWPVLIETREIEQRVLADRNQRLVDEIESHRELLRNLAHEVKNPLGGLRGAAQLLEAELPS
AALAEYTQVIITEADRLQALVDRLSGPQRVPLAARPVNIHEICERVCALIQAEFRDAVELVRDYDASVPELRGDAARLMQ
AVLNVARNAAQELVQQKPGADVPAPRVVLRTRVARQVMLAHRQHRLALVVSVLDNGPGVPEHIRERIFHPLVTARAGGTG
LGLSLAQDFVQQHGGIIEFESRARHTEFRLVLPMEPPL
>SEQF1086_CAE41887.1 nitrogen regulation protein NR(I) [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPVWIVDDDQAIRWVLEKALARAGIATRSFSRAADVLQALAADVPSVLVSDIRMPGGDGLELLRQIKERNPGLPVIVMT
AFADLDSTVSAFQGGAFDYLAKPFDVNEAVALIQRAMQEGEPAADAGAAGEPAQNGERWVMTQSSSTAMQEVFRAIGRLA
QSKVTVLITGESGTGKELVARALHGHGARAGGPFVALNAAAIPRDLLEAELFGHERGAFTGANTLRRGRFEEAHGGTLFL
DEIGDMPIELQTRLLRVLAEGSFYRVGGAQPVRVDVRIVAATHQPLEQRVEQGLFREDLFHRLNVIRLRLPPLRERVEDI
PALAQHFLATSARALGVPVKRLTPDALAVLARFDFPGNVRQLENFCHWLTVMAPGQTIDRNDLPPEIRAVEHQQAAARQA
EPAAAAAAAGTAPAPAEAPDAAPRNWHAALLRDAQFRLERGEPAVMATLTRQFEKILLQSALDASRGRRVEAASRLGIGR
NTITRKLRELGIDDE
>SEQF1086_CAE41888.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPRPRAAPPPGQPITPDLLVMVDAIARHGSFAKAARELGKVPSAVTYAIRKLEDGLDMLLFDRSGHRAALTPAGQALLAE
GRHVLQSLDALASRVKRVATGWEGELRIAVSAVLPWTPLYDLIEDFRALAGATTLRFSAEVLSGNWDALASGRADLLIGA
DAAGAPSGAYRTQAMGQTQFAFCVAPHHPLAALGRPLSARDIAAYCAIVVADTSRDLPPRTRGLLREQPVIVMPTMQAKI
DAQVRGIGVGHLPLTLAAPYLAQGLLATCPTDDVVPLTEQVVYAWRDPNPGRALQWWLERLRSPRLCESLLGVS
>SEQF1086_CAE41889.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLTLRRSAERGHANHGWLDTHHTFSFANYYDPAHMGFGPLRVINDDRIAAGRGFGTHGHRDMEIITYVLDGAIAHKDSMG
SGSTIRPGDVQRMSAGRGVMHSEFNPQPDAATHMLQIWIEPDVAGIAPEYEEKRFPEADKRGRLRQLVSPDGADGSLRIH
QDARLYAGLFDGTESAELPLAAGRRSWVHVARGSLVVNGQRLGAGDGLALQDEAAVRLGDGEGAEVLVFDLP
>SEQF1086_CAE41890.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSILNNAPQSAVQTIVVPRTSDLGGFEVRRALPSAQQRSVGPFVFLDEMGPVQFPAGVGMDVRPHPHIGLATVTYLYEGS
LVHRDGAGNVQTILPGEVNWMTAGRGIVHSERTAPESRLAPLRMYGLQMWVGLPKEHEETDPGFVHYGTQAQPVVEGEGV
RAQVIAGSLFGQTSGVRTLSPLFYGDVQLQAGATVVVPPEHEERAAYLVEGTVDIEGQAYEPGLLIVFAPGVAVTIRAQT
AARMALVGGEPLDGPRFIWWNFVSSSKDRIEQAKEDWTRNRFGQVVPGDETEFIPLPPPRS
>SEQF1086_CAE41891.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41893.1 putative inner membrane component of binding-protein-dependent transport system [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHTTFLPRSARTRFSERGSGWLAGASLIALAVLAPVAALAWWALHADLSHWTHLTRYVLPQAMANTMILLAGVGVLVTML
GTGAAWLVTAYEFPTRRTLTWALLLPLAVPTYIIAFAYLDLLHPIGPVQGAIRAVLGYDSPRQFRLPDLRSIYGAIFVLG
FVLYPYVYLSTRVMFMTQAASLLEAARTLGAGRVGVFLRVALPMARPAIAVGVSLALLETLNDIGASEFLGVQTLTVSVY
TTWITRSDLASAAQIALTMLVFVIALILLERHGRKRQRYANTQRMRAMQPRRLHGPAAALAAVLGWIPVVLGFVAPALYL
IVETYKRLHLVGGVSDQLWAGLRNTLMVAALATIVTLLCGLVVAWAGRSLRESASFNPGRTCGRIASLGYAVPGTVLAIG
LLAPFAWLDHTMSTLFGWNGLLLIGTTGALVCAYTIRFLAISTGGIEAGLARIPASLEQASRLLGETSAGTLRRVHLPLL
RPALAASALLVFVDTMKELPATLLLRPLNFETLATWLYAEAARGTYEEGAVAALAIVAAGLIPVILLARTNLKMGH
>SEQF1086_CAE41894.1 putative iron binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPSTKRSSLIPLLRALALAGVATFSAQALASDEVSLYTTREPKLIQPLLDAFAKDSGIKVNTVFVKDGLLERVRAEGDKS
PADVLMTVDIGNLIDLVNGGVTQKIQSQTLDSVVPANLRGAEGSWYALSLRDRVLYVEKDLKLDSFRYGDLADPKWKGKV
CIRSGQHPYNTALVAAMIAHDGAEATEKWLRGVKANLARKAAGGDRDVARDILGGICDIGLANAYYVGHMKNAEPGTDAR
KWGDAIKVVRPTFATAKDGGTHVNISGAAVAAHAPNKANAVKLLEYLVSEPAQTLYAQANYEYPVRAGVKLDAVVASFGP
LKVDTLPVAEIAKYRKQASELVDKVGFDN
>SEQF1086_CAE41895.1 ferredoxin--NADP reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAFNTERVLSVRHWNDTLFSFTTTRDAALRFHNGHFVMIGLEIEGKPLMRAYSIASANYEENLEFLSIKVQNGPLTSRL
QHLKEGDTILVSRKPVGTLVVDDLKPGKHLYLFGTGTGLAPFMSIIKDPEVYERFEKVVLVHGVRWASELAYADFIEKEL
PGNEFFGDIVRDKLVYYPTVTREPFRNQGRITQLVDSGKLCADIGLPQLDPAVDRAMICGSPHMLADIRAMLDKRGFEVS
PGVGEPGDYVFERAFVDK
>SEQF1086_CAE41896.1 probable LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTTLDELQAFVAVVDTGSITAAAEQLGLTVSAASRTLGRLEEKLQTTLVRRTTRRLELTEEGAAFLQHARAILASVGEA
EEQMAARRMRPAGRLRVDAATPFMLHVLVPLIAGFHARYPEVELELNSNEGIVDLIEKRTDVAFRIGVLKDSTLHARAVG
TSRLRVLASPAYLERRGAPTRTAQLAQHALLGFTQPETLNDWPLRDADGAVLRIRPTIASSSGETLRHMALAGLGIVCLS
DFMTGEDRRAGALVQLFARQTLDVRQPVNAVYYRNTALAARITCFVDHVIETLGARPFDA
>SEQF1086_CAE41898.1 probable aldehyde reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTIPSFGVGTFRLTGQTVIDSVRNAIDLGYRAVDTAQIYGNETEVGQTIAESGVARSELFVTTKIWTDNYARAKLLPSLR
ASLEKLRTDYVDLTLIHWPAPGNGVALPEHMEALAEAKALGLTRRIGISNFNIALTRQAIAAVGQGEIATNQIELSPYLQ
SARLTAFLREQGIAVTSYMTLAYGKVLKDPVLARIADKHRSTVAQVALAWALQQGYAVIPSSTKRENLASNLLARGLALD
ADDMARIAALERNGREVDPEGLAPAWD
>SEQF1086_CAE41900.1 putative translational inhibitor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKQIIHTDAAPAAVGPYSQAVAATGAKTVYLSGQIGLEPGTGDLVSENFDAQVRQAFANMQAVIKEAGGTLDDIVKLTL
FLTDLNKFAAANAIMAELIPQPFPARSTVGVASLPKGAQFEMEAVLVL
>SEQF1086_CAE41901.1 ATP-dependent DNA helicase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLHLPLRYEDETRVTPVSSLRPGFAAQVEGEILRSEVLYRPRRQLTAVLADDTGELQLRWLNFYPSQQKQLTVGRRLRAR
GEVRGGLFGREMVHPRMSSADQPLPASLTPVYPSTDGLPQPTLRKAIGQALARADLSDTLPEEARRRYGLAEFAPAVRLL
HAPPPDAAEHELMERIHPAWRRIKFDELLAQQLSLAAARAARRVKRAEPLPASQDEDGLVARLYEALPFALTGAQQRVVA
EIAADLAQPYPMHRLLQGDVGSGKTVVAAIAAAQAIACEAQVALMAPTEILAEQHFRKLVGWLEPLGVAVAWLSGSLSAK
ARREAAAAVADGSVQLVVGTQALIQDHVMFQRLGLSIVDEQHRFGVGQRLALSRKGETGRGVIVPHQLNMSATPIPRTLA
MTFFADLDVSVIDELPPGRTPVVTKLVADARREEVIGHIAHAARQGRQAYWVCPLVEESEALELQTAVDTHEAMRAALPD
LRIGLVHGRLPQAEKAEVMRAFREGEIDLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESICVLL
YQAPLSQVARQRLRAMFETSDGFEIARRDLEQRGPGEFLGTRQSGLALLRFADLEADVAIAEQAREAAVWLRAKHPEAVA
AHLARWMRGREDFLRT
>SEQF1086_CAE41902.1 probable LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIRKLEDELGVTLFERGGTEVGVTPIGQRIVAQAQKVLEESASIKE
IARQGHDPLAGPLRVGVIHTIGPYLLPRLVPEQIARTPQMPLLLQENFTVRLVELLRQGEIDCAIMALPLPEAGLVMQPL
YDEPFVVAVPHDHEWAQRKAIDAQDLKQQTMLLLGSGHCFRDQVLEVCPELSRFSASSDGIQRTFEGSSLETIRHMVAAG
IGVTVLPFTAVPNPPQPKSLLRYLPFDGETPERRVVLAWRRSFPRLAAIEALAQAVYACGLPGVRMLDEEAASAQVD
>SEQF1086_CAE41903.1 probable LysR family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLAVLADTRSFTAAAQRLGVSKSLISLRMKALEQELGVSLLLRTTRSVRPTEAGALLVERARPALDTLEDSLGEVRNLAR
APRGRLRLTAPVALGRQHLGIWLARLGQHFPDIALEVYLSDRFVNLRQEGYDFALRHADQVSDAYVSKRLCATRAHLVAS
PAYLARHGRPAHPSELARHRCLLYRGDERSPQWSFAPRQGRGAAVHVKPVDCLSVNNSELLRESVAHGLGIAMVPDFSLG
DCADLEPVLPQWDCYAGFGRSLYLLKPFSATPTEAHRVVEQALAEHFRPGFATPA
>SEQF1086_CAE41904.1 probable probable aldehyde dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MANQTAQVAHWIGGQAAYGAEHGLQDINDPATGEVAAQVGLGGGDTVAQAVAAARAAQPAWAAKSPLHRARVLNRFLALL
EDNKETLARMISREHGKVISDARGEVMRGIEVVEFACGAPELMKGAMSINVGGGIDNWVQREPLGVVAGITPFNFPVMVP
LWMMPMALATGNAFVLKPSPLDASPSLALAEMLGQAGLPAGVASVVQGGVQAVNALIDHPDVKAVSFVGSTAVAHQIYER
SAREGKRVQALGGAKNHLVVMPDADPEGAADALVGAAFGSAGERCMAISVAVFVGGAAEAVMPHILRKARALKVRRGMQE
DAEMGAIVSAAARDRIAAYIASGVDEGASLLLDGREIAAADCGEGCGEGCGNGYWLGPTVFDRVQPSMRIYREEIFGPVL
ACVHVETLEQAIDLINGHDFANGVSLYTDSGTAARAFVQGIEVGMVGVNVPIPVPAAWQGFGGWKQSLFGDLHVYGEEGV
RFYTRQKSVMQRWAAKAAGMSFAMPRSG
>SEQF1086_CAE41905.1 putative DNA-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAKPTKNSSAAPRINIGISDKDRAAITGELSKLLADSYTLYLMTHNFHWNVTGPLFNTLHNMFMAQYTEEWNALDSIAER
IRALGHYAPGTYREYAKLSSIAEPDSVPDALEMVRMLVKGNEAVAKTARAAFDKADAANDQPTADLLTQRLDVHEKNAWM
LRSLLQ
>SEQF1086_CAE41906.1 C-terminal region of a putative polysaccharide biosynthesis protein (partial) [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLGASIREIDPGYAGLTSLQRSLSEAHKREFRSQRAQEATPADLMASAQRIIEASPLDRDANIELAVQNLRTGNLSESRR
PARRRAGVPR
>SEQF1086_CAE41907.1 putative N-terminal region of capsular polysaccharide biosynthesis protein (partial) [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIISTIGSCRVAGPVTKLQAQRSFVLDNRLLYGFTHNTKETIQAIRFMRGELRLPESLWPFISDQPFRNGNSTPPPQDAH
YVVEISSVKVLELDGLYLQLVRFKEALSVCPDLRKIFFDHPGADQRGQRLQLLQATPSFARLATHIQHALTHTVVRSQTA
AEIEEDLHAIAQLLGPKLVLVTHCNAKNATGELIAERAKMVARVAQAAARLGLVSVDPGALLAGFGQERGMPDEGLDTAH
YTPAFAKLVGKEISDKLLGPAITDDAADSLHNLDFRACMERSKQSAQAHEWDLALLFANRAIELKPGSGSAYVLRARAVT
ALDQTEDMLEAWSLALATDSNRTPYVLRQAAEAAFYMRDHERAREWAEASLQKEDDDKTALLLGRIYTRLGMNTQAEQVF
RRCAASDPARSLRFAARAHTPLADAASMVNALTTTPAADPGSVDGVRQTVLKRATREVRHAGRAGALLPSLGAFYAVRTL
PSEHGAAHDADLINQAYRRLLRAYEDTPEYQNSDEAIALLADLAALPEVDPRYIQRAAKMLHAHGRKQAATKCWEHLAGA
ELPAGRDTVALAASKLSQLEAHRTAASVYRRLANSGAMDTATAQEYIDKCLRALARSVRACITEERLRDAEQAGGFRSNC
RCAGSALQARCWRRGPAGWPR
>SEQF1086_CAE41908.1 hypothetical protein BP1619 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEHDNNTVRHMPAPAARRAAAPDRLRQLTQENELAYSRLEQERAARVQAEKDLAGVKALLRETNQQLAKQRRTLTWQFGE
AVTRARTLKDYVLLPYRLIKLSEDHRRQSRHAPVVRKHASAALPAETASAIKEALEYVKRVRSPEVILWIGRQPWPAEVR
AKVFCEVAKWARTSYPQIAEQIVQQLLGLDPAAPHVRQLAFSLYDAGIVDASAQLLRAARTAGATFSTAERLRAERIEHA
QGILAQSIEPAARGDYTFDFDAQGPIVILSPVSILQGRNAASNALHRFALSMQARYGDTMVISLAAQHAESADAAPGQQA
DAALHARTGLVVDGVAYRHAPAISRQTPSFQDVCAAMAETVLAATVRQQPRAVLAWDDAYCALGASAAAQTLRVPYGLVL
QSLDFFQKTAANHLLSERARVDLNLLTLAARQADLLALGSPALQGALENLLDGSRPVALVPPLPLPPMNHRKEAPPDLAA
TLRRLEGKRVFAVTEDEPAVATARALIDLYAEISFVQPDAVLLVMSNGKAAAAMRHHAVAIGLQEGQVVFAPPASDAISR
EQLLRRVEIALFPYVDNRAEVSLVPSAAALLECMALGVCPAVGPAPAYAAHVEAGRNGVPIDLNAPAAETAAHLQQVLGE
AGELGKRARESVQRDLPWHDYDEAIGALLLQAATPQPHILGRRAEPQLLHLKVS
>SEQF1086_CAE41909.1 putative glycosyl transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLPGDTPLRPADFIGLAPISPRPVAAGAPLISVIICARDAAPYINNALQSIQAQTYPNIEIIAIDDGSTDNTFQHLSAAA
AQNSRINIARTKNHGVYAARNMALQRAKGEFITFLDADDIMLATRLQDQAALLQASGACAAVSRLLRLTADGQLAAPRVF
PFVRHNPCSLMIRRDALAVIGQFEEMRFGADEEYEHRMQVLLGFHSIARSRAVQTVALHRPQSLTQHGATGLGSDQGRQR
RIAYRETWMRRHASLAPLRTP
>SEQF1086_CAE41910.1 putative polysialic acid transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSALTVQARVIGSLIFRETRVRFGGTRLGYLWALIEPILHVAVLSTIYVVWGRQAPVGNLQMFFITGIMPFFLFSHTSS
RLARSISSNASLLRLPPITNMDIVFAKALLQALTWVAVFAILLFLVMLGGKLILPQRLEECAAAALFTFLLGFGMGLINA
VLNMLFKSWEHLYSALTRPLYLLSGVFYLVDALPEQARRVLVWNPLVHAIEWFRAGYFTHFSSLTLDRGYLIKWAVGSVV
LGLCLERAMRRRLHTR
>SEQF1086_CAE41911.1 polysialic acid transport ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
METAMDQDTIISLRNVCKGYRSKKGIRRILDDVSFDFRGGENLAILGGNGSGKSVLLRMICGMELPDSGTVQRAVSISYP
LGFAGGISSNMTGRDNVRFIARIYGCDVPDVERFVYDFSELGRSFDLPVVTYANSMRARLSYGISMALRCDVYVVDEMAA
VGDVNFKRKCLEVFAERSRGATIIMAANAPTTVRRFCSHGVIMQHGAMAHYGPLDETIARYTQSAPAPAPAPAAEAEPAV
DTVDAEQS
>SEQF1086_CAE41912.1 capsule polysaccharide export inner-membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTSTEKTYTGPRLPGMTPGKPANYLRWSAIALIGISGVLLALYLFFIASDQYVSEARFGLRAGSQMQQASANRDGHSSMG
SGAMATELFVDSFAVVDYVKSRQIVQELDKELNLREMWSKPMIDFWYGMNQDETEEGLWRQWNRMVDIEFDMSTGAIILR
VRAFSPEESLQLAQAILQASEKLVNQMSAKSREDSVDFARVEVGIAEKRLAQARVQVQDLRARTGVLDPVKEAEANLQLA
AKVRGDVATAAAELDAMGRGGLRSGPAYERVKARHEALMRQLKDLNDHQISGGRSENGNTLSKLLREYESAETERQFAEA
YYTGALKTLEDARGLAARQVLYTVIASQPQLADESLYPRRFTDTALGLLGLFILWIVAVLVVYAVKDHA
>SEQF1086_CAE41913.1 capsular polysaccharide biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFSFLSRIRKPRRADTAAGPTGGPASGPTILDLLEAALAEPGESEEAGRELLQQARQVLERHAAVHKPAAALPELLDYVR
RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE
AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLAALR
RLGVEGDGRDVPVSILVLEKMLQEIGRRRNAEYDAGPESFVGPVLMINGSLGAGGAERQFVNTAVAMQSAIQQGQSIAGY
GVLGPVQVVCRSLRSREGADFFAATLRDAGIPVSVYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSV
PSVVHIWQDGSIFACALAALLAGVPRIVLSVRTMPPVDRPDRYRVEYDIIYSELLKMRGVALSSNSQFAAHRYADWLGVD
ERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPHVRFIMVGGGPLL
ESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQEGVTGLTLP
ADTVTAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMIASTVRCYQMP
>SEQF1086_CAE41914.1 capsular polysaccharide biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTMPPKLFVLGSCRVHRPARLLHDGGLVQPLTAGISGYIHSTREAVQRVQWLADRTRPDSQLLPFMFPAGRTPVVTPARA
DELAQADAVLVEAASERSVSVNGVFLQKNLVVKHLVRELGDEGRNWWRSLVRAGEVAPEAYEAVAGLYRDQAEETVLAGG
LRVLREARCAEDSEAVVRADLMYLALRLGKPVLVVTHVDAERADGRRIAARVRHVARIKAAARGLHQVHVIDPLDAAPDW
PSARLLASDGADMNHYSPEFEPVLAGYMHTRIRAALAASSGALAPSQFLPEYQDGP
>SEQF1086_CAE41915.1 putative capsular polysaccharide export protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNHRLIRCLSIALLALLSGCSILSGSGPTRSAIMDGGSTDATGAKLGSYDLVDLRADTIAPYVLVKAVSKDGATSDGYVG
NMRVMPGDVLRILVADSMETGLFAPLAAGGTVFEAVRVAADGSISLPYAGRLKVQGKSLAQIEQLVKGSLRNTAAVQPQA
MVDLADDRSNSVLVAGAVPRPGRFGGNKGPLTALDAITQAGGSTLPAYQADVVIRTGSKVQRIPYQQLLNGRNVAVEPRS
ELVVEPNLKRFVAMGALTKPGLHELPSNQTNLLDALGVAGGLNDRAADATGVFVFRLDGRNADGRPRPTVFRLNMRNPES
MFLAKQFELLPEDVVYVSNAPMYEWEKIITPIVQVLIVGQRVGTY
>SEQF1086_CAE41916.1 capsular polysaccharide biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPKKFSNPADVHLAVVGLGYVGLPLAVEFGKKRPVIGFDINERRIAALKAGHDHTLEVEDDELARAAQLSYTAEREELGK
ANVFIVTVPTPIDEYKQPDLTPLVKASETIGAVLKRGDIVIYESTVYPGATEEDCVPVLERVSGLKFNQDFYAGYSPERI
NPGDKAHRVNTIKKVTSGSTPEVAELVDQLYNEIITAGTHKASSIRVAEAAKVIENTQRDVNIALINELALIFNKMGIDT
EAVLQAAGTKWNFLPFRPGLVGGHCIGVDPYYLTHKAQAIGYHPEIILAGRRLNDSMGGYVVSQLVKAMAKRRIHVEGAR
VLLMGLTFKENCPDLRNTRVVDIVRELGEYHVDVDVYDPWVDPAEAEHEYGITPVAKPAAGAYDAIILAVSHHQFVEMGA
EAIRKFGKAEHILYDLKYVLAPEQADLRL
>SEQF1086_CAE41917.1 capsular polysaccharide biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTNRFETTCAQLRAQPQKWLVTGCAGFIGSNLLETLLGLDQAVVGLDNFATGHQHNLDEVRAAVTPEQWARFTFIEGDIR
DLAACQRAVQGVDRVLHQAALGSVPRSLKDPITTNEVNIGGFLNMLVAARDAQVQAFVYAASSSTYGDHPDLPKVEERIG
NPLSPYAVTKYVNELYADVFARSYGFSSVGLRYFNVFGKRQDPDGAYAAVIPKWTAAMIKGEDVVINGDGQTSRDFCFVE
NAVQANLLAAMAAPEGANQVYNVAYNARTTLTELFEHLRRTLAGQGVSYEKAPVYAEFRAGDVRHSQADIGKAGKLLGYE
PAYDILRGLEAAMPWYTQFLR
>SEQF1086_CAE41918.1 capsular polysaccharide export protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIELHSSGIARIPYLTELLGAPVTRYRRFWPPGGAAPRAVAGWGARPSAAPARRRARSLGVPYIALEDGFLRSFGTGRHF
PPLSLVVDRLGIYYDATRESELECLLASSRTLLDGIEDAVPEAMELVRERRLSKYNQGCFLATGVPADGRRRVLVVDQTE
GDMSVTLGCAEAATFEAMLAAARAESPGALICVKTHPEVAAGDKSGYLSRVTDDADTVALRHDMNPLALLEQMDRVYVVS
SQMGFEALMLDKPVTCFGMPWYAGWGVTDDRQRCERRGRARSVEELFAGAYFHYTRYLDPVLHRRGTIFDVIDWLTRQRD
MAQRLPSRVIGVGMRRWKAAALAPMLALKPGQAVFAADAARARDLGQAAGDALVHWGARAPAGVAELAEQSGCAVLAVED
GFLRSVGLGSDLIRPLSLALDGRGIYFDPRQPSDLEHELNRGGFSPGELASAARIRALVVAHGITKYNVAQPQPADWPAR
GREIVLVPGQVEDDASVRLGCDEVRTNLDLLAAARAAHPDAYIVYKPHPDVVSRNRRGRVALREARRHADHVESALSVVS
CIQACDVVHTMTSLTGFDALLRGKRVVTYGKPFYAGWGLTEDRAADWPRDRRTRRLSLDELVAGTLLRYPLYWDWELRGY
TTCEAVLTHIFETRERLQREGRLQGLRAGYARRQVRKLQTLWLAR
>SEQF1086_CAE41920.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41922.1 putative arylsulfatase protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAGAHAQAQGEAAKPQASGKPPNILVIFGDDIGQANISAYTRGVVGYTTPNIDRIAKEGIIFMDYYAENSCTAGRSSFI
TGQSPRRTGLSKVGVPGVDVGLQDRDVTIAQALKAHGYVTAQFGKNHLGDRDEYLPTKHGFDEFFGNLYHLNAEEEPERP
YWPQDPKDPVVKAYKPRGVIKASADGKIEDTGALTSKRMETIDDETVGAALDYIDKHGKGDKPFFVWMNTTRMHIYTHIR
PEHQGKSGMPGNDYADGMWEHDQDVGKLLKKLDDLGIADNTIVVYTTDNGPNQFSWPDAATTPFRNEKDSNWEGAFRVPA
MVRWPGHIPAGVTKNGMVSGLDWFPTLLAAAGEGDIKEKLLKGWSAGGGKDYKVRLDGYNQLEYLTGKSDKSARNDFYYF
NDDGLLVAMRMENWKIVFCEQRAPGGFDVWKDPFVCLRVPKVFNLRMDPYERADIVSDQYYGWLSKNAYLAFIGSAKASE
FLETFVEWPPSQRPASFSVDQVQEEVDRKIMQYFEEQKKKQGK
>SEQF1086_CAE41923.1 putative nonspecific acid phosphatase precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDRHTTEGWRRWAARLGAAAMALLLAACAAPRQQAASVDELPSWNDGPSRTAIVEFVRAVTRSGGPDFVAADERIAVFDN
DGTLWSEQPMYFQMLFALDRVKSMAPRHPDWARRQPFKAALQDDHAALAKGGDVALMKIVGATHTDMSTDTFTRSVRYWA
STARHPRFDRLYTELTFAPMRELLDYLRAHGFKTYIVSGGETEFMRSWTQQAYGIPPEQVIGSSFVTTYGVRDGEPTLWR
HGKLEFNDDGPGKPVAIQRYIGRRPILAFGNSDGDLQMLQWTAAGDGKRFAGLVHHTDAQREWAYDRDSRIGRLDRALDE
ARRQDWTVVDMKTEWKRVYAFEQP
>SEQF1086_CAE41924.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRWLPLACAALLALGLAGAPRAQDAPPLRVTARLPAGAQAQAGATLRLELDVMTTTWFTQPPRLPALTLPGVMVTPPSG
EGELVRAEHNGVAYSGLRYTYLLSPTAAGQVQVPALAVSAEVGPGKTPASASSAPLSFTVGGAAGAQPAPHGALTVSQDF
ALAPDPLVAGGRVTRSITQRAEGVQAMLLPPAPLADAPGFKRYAREPEVTTLTDGRGGFVGGQRIDRADYVAEQAGELSL
PAVTLAWRDGAGGQPRQQARPGRTFAVAAAPAVAPPFSLTDDLARLRHGLRWVLPAAWLAWAAGGALALLVLWLGWPWWR
QGLCRLRAAALRRRARRRAGEPWHWRAWRREARRDSGTLSAFYRWLALAAGAPDLRGATATLDEAAQGAAAAALRDAYGR
APARAGWRVRLGMASRQWRGNWRARRAAAPAHGLPEVLNPARAARPRS
>SEQF1086_CAE41925.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDIDLSAFHFLRPWWLLAVPLAALLWWARRGERGAPGRDLRIAPALLPYLVLRTPGSRGPRPIDALALFLALGGVAAAGP
AWQRDEPAYLDNVAPLIVALDLSASMDGADVPPTRLEAARRVLRDLAARRAAARTGLIAYAGSSHLVLPPTDDAALLDLF
AQALATGLIERPGRDADGAIALAAQALAAERAGGTLLILTDGADRARMDAVRRQAQAARDMQVLVMAVGVNGIDTQALQE
LARAAGAALGSLTGGPDDQDWIALHAQAHFRAVQDAQSGPVHWKDAGYWLCWPLALLALLAVRRGWSVAWSAGVLVVAMA
GMPQPARADALADAFLTADQQGRRAFEHGRYDAAARHFHDPNWKGRAAYQAGDYRAALAAFSTLPSAEGYFYVGNTQTRL
HRYDAALAAYDRALALRPGWQPAVVNRGIVARLLAAMAQTQQDQPAEPPDRTIADRSAQAGKMSQAPVAQAGSEEAWLRN
LTLSPARFLRSKFAVEDAAAGTRP
>SEQF1086_CAE41926.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MWRLEYPWLLAAAPLALAAYRWLPAYVQGRQALRLPFFDAMATLTGKSPTRPGVQRGRAQLWLNVAVWLLLALALARPQW
VEPPLTHVEPMRDILLVVDISQSMDSEDFRDAQGRPASRWQAVQAVVGDFIDKRPDDRLGLIVFGAGAYPQAPLTRDHAA
LRLLLQRTAVGMAGPNTALGDAIGLGIRMLDHAGERDKILILLTDGNDTASAVPPARAAELAAQHRVVVHTIGIGDPAAS
GEDRVDFDALRDIARIAGGRFFRARDQASLQEVYATLDRITPHEVRTLRHQPKREDFWMPLGAALALLALWHGGAALAAW
RSARPDRRARREDAWT
>SEQF1086_CAE41928.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPRAAHPVHPPLPELMALEEAVGGLSFVAGQPLGSVLAGLHGSRLRGRGLDFAELRRYVPGDDLRQLDPRASLRYGKPYV
RAYTEERDRPAMIVADQRMSMYFGSVHAFKCAVAARLAALAAWTAYRGGDRVGGLVFDDDGVRAFKPLRSRDRVQALLAE
VARANAGLSAGRPERPAGAGLNAALRGALAHAPHDCLVCIVSDFAGADAETLRTLRLLARHNDVVAMLVFDPMAQDLPRR
GRLVVTQGELQLEIAVGRQRERQPLADFFSGRLREVADLLRRSRVPLLSIDTAEDEVVQLRRALGRLQTGARR
>SEQF1086_CAE41929.1 putative regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MANRDGIVALEQAVSAAVLGQAAVIRHVLVALLADGHVLLESLPGLAKTRTVKALAAHLDATMRRIQFTPDLLPSDITGA
DVLQQDADGRQRIEFQQGPLFGNLVLADEINRAPAKVQSALLEAMEERQITVGGVTRPMAPLFMVLATQNPIEQEGTYPL
PEAQMDRFLMKIRLDYPAADDEIAMLALLRAAPQPDAAGATRLAQEELFACRDAAAALYVAPAVDRYIVDLVNATRRPAD
YDAELGRWIQIGASPRGAIALDRAARAHGWLAGADFSSPDDVRAVAHPVLRHRLHLSYDAVADGVTAEQVIDRLLDTVAV
PA
>SEQF1086_CAE41931.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRSRFAWRFCNAGLALALAALPGAARATEGALGRLVTGTTVQPNAGVVSPQPITVLSLGQLYLDGRIGGSREVPVAGKTS
LGLDAEMALTLATLMKTWDTGPGRWNFASSLTVPYLWLKTTATLAGERGRAARESDIASNLFDLNFTPLIAGYHFSETQH
LALSLSIWAPTGKYDADALANPSLNNWTFIPQVAYTGMFLEHGLQLDAVANVQFYTRNTATDYRNAPIFGLELMGRKLFG
NGMGAGLIVGTQQQLGPDKGPTADRLNGFEGRDWALGPILTYDRKLADQRSLSFSLRWTPTVSSTRRLDSDSTVLGTVAL
IF
>SEQF1086_CAE41932.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRLIRRFAHALAVVGSAGFLAAPAAASTGTYPDKPIHLLVAFSTGGVLDTLARTMASELSTRYGQSIVVENRTGASGNIG
TDLLARAKPDGYTIGMGTIATHGINPALYGERLPYDPIKGFTPLALLAEQTNIMLVNNDLPVTSIPTLIEYLRANPGKVA
YGSAGNGSSQHLSGQLFKLAAGVELLHVPYRGSVPALTDLVSGQVQLMFVDVPAALPFIKSGKVRPIAVTAAHRSSAFPD
LPTVAEQGLEGFNVRAWFGVLAPAGTPAPIAEKLSADMIAAVQQPAIRERLEALGMDIKTLDGPAFGQFIQDEIARWDEI
VKRSGTRLE
>SEQF1086_CAE41933.1 probable short-chain dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGRLSGRNALITGAAVGIGAAMARRFCAEGASVLLGDIDAERGQALAAELAATGARARFARLDVTDEDSVRQAMELAEAE
HGPLHILVNNAGGSSLNDRSVVEFALEEFWRAINIDLLGTVLCCRHAIPRIAAAGGGAVVNMGSIAALRGLKGRDAYTAA
KGGVHALTRSMAVEFAEQRVRCNAIAPGAVLSERMARFIDEDPRVAAAVSRHLLGLPEPDEIAAMAVFLASEESRHVTGS
IFQIDGGRAAAA
>SEQF1086_CAE41934.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVEAIETFHWGAIFQIVLIDILLGGDNAVVIALACRNLPHRQRIKGILWGTAGAVLLRVLLIAFALVLLDIPFLKALGCL
LLVWIGVKLLAPHEDAHGNITGGTSVLAAIRTIILADFAMSLDNVIAIAGAAQNAQADHQLYYVIFGLCVSVPIIVWGST
LVLKLIDRFPLVVTLGAGLLGWIAGGMLITDIYVVERWGEPAPMLKLAVEAAGALVVVAAGKWLAARRRHARPTHDESAS
TTPGG
>SEQF1086_CAE41935.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE41937.1 high-affinity branched-chain amino acid transport, ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLLEIHGLGITFGGLRAVHDVAFSVEPGEIVSVIGPNGAGKTTLFNMISGIYRPGAGRVVLDRDDVTGMAPFRLARRGM
SRTFQNLQIFQNMTVLENAIAGFHLQEQGALLSDLFNLRASRARARRAEEGARALLQRVGLERAAEREAASLSYGSLKRL
EIARALALQPKVLLLDEPAAGCNAVETEEIDHLIAEVAATGVAILLVEHDMKMVMRISNHIVVLDHGEKIAEGPPDAISR
DPAVIAAYLGTDSQPGDRPC
>SEQF1086_CAE41938.1 high-affinity branched-chain amino acid transport, ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLTVQGLRSCYGRIEVLHGIDLQVDSGEIVTVVGANGAGKTTLLRCLSGVQPVSAGAITFRGEALAAVPAHRRLARGLAH
SPEGRQIFTNLSVEENLRLGAYLYADDRVERDMDDAFQMFPILREKRHLAAGGLSGGQQQMLAMARALMGRPSCLLLDEP
SMGLAPIIVQQIFDVIRGLKALGVTVLLIEQNAYGALQIADRGYVMETGNITMQGAASALIADPRIRAAYLGI
>SEQF1086_CAE41939.1 putative TetR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARTRSADYENIRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLRDMLTTHVDSLLERCRQVLYG
SNEPKTRFLQIVKLFLEIYATSRDRHVVMLTCLDALPEDQRKALIAKQRELIAYVRDALLQLRPDMAANRTLAHVDTMLF
FGMINWTYTWYKADGSVSPDALAERTVQLFLDGYLNLPSA
>SEQF1086_CAE41940.1 putative oxidoreductase (Partial) [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTGAAPRPLPAAFAGRSNVFELRNLADVQRLQPAFLAGRRLLVLGGGYIGLETAAVAAQAGLSVQVVERASRVLERVAC
PATAAAIRALHQRHGVLIHEGRTVAGTEGDEALTGVELDNGLRIACDLVVAGVGVAPQTALAEAAGIDCDDGILVDAYGR
TSAPDVWAAGDCARFVLGGEPARLESVQNAIDQAEAVADDMLGQGRPYQPVPWFWSDQYDMKLQIVGLNRGYDAVVSHAS
AKGESHWYFRADRLISVDALNDGRAYMVGKKLLEAGRAVGRGEVERPGFEPMQLLRDQAEGRLR
>SEQF1086_CAE41941.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE41942.1 putative capsular polysaccharide biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAETFWLALAPAWAGGLVLSWALEALLRPPVQPPWRRPAWMLLLHAGVWTLLFALELALFRRPYFGAINVLAIEAVLVLV
SAAKARVLREPFVYSDFEYFTDALRHPRLYLPFLGWPAALLLACGYGLALWAGLALESSATGARTAAWAAHAAPAPFWGA
TLALAAAGAALAVLAGHRDAGLTYEADQDLRRLGLVATLWLYGRAERQPWTPAMRSGPFGAAPAAAGAGPLPHLVSVQSE
SFFDARRVFGTLKPEVLAGLDALRAEALEHGQLEVAAWGANTVRTEFAFLTGLAASALGVHRYNPYRRLRQPQPSLASHL
RQRGYRTVCVHPFHASFYGRDRVMPWLGFDEFVHLDAFADAPRAGPYVADAALARYVAERLAGQGSQPLYVHVITMENYG
PLHWESVDAADAAAVLDGPLAPGCADLVAYARHLRNADAMFTGLAAAMRGLSRPAGLCVYGDHVPIMAEVYRRLGEPDGR
TDYLIWQAGGQGSAAPGLRRVDELAQVFLRHMGLAPPG
>SEQF1086_CAE41943.1 putative oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRSNWPACVLLTGASGEIGRALALEYAAPGVRLILQGRRLGRLDELVGLCRERGATLSVAAFDIRATERLLAWLEEVNAT
HPPDLAIINADVNIDIGPDRAGERWEDVCMVMDTNLRAAQATVHGLLPAMRARGQGQIALMSSLAAWRGLPDTPSYSASK
AAVKAYGEALRDWLAPQGVRVNVIMPGYVASPMCAAMPGPKPFLWPPGKAARAIRRGLAANRARISFPFPLNLGCWFLGL
AHPAVSSRLLRWLGYGG
>SEQF1086_CAE41944.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE41945.1 putative exported protein (Pseudogene) [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRPGPWLMALAACAVASSAWGQQGLRLSKDDLQKRANGVLALMSFSIVPDITTSALNIAGGGGSTSGSTEFYMTQLGGGD
TISKSVPLYLEGVLAASRYDPTFVATQGADSRRIPAKWNSVSATGGIGWDFPLTDELKLRPIFNVALGNVTSDLRAASWY
VGRQTGQDVDFLDRGSLNAYGLGGSLMLDYEHYRPGYEVDVELRYSDIRLRSFDSSAAVRGQATAQSANLWARYRAPTGA
TLLQRPLRYVLELTHSEFLGDQRGVLGFDRLTSVGAGLELDSSAYDVFVTRTRLVGRYVFGNNVSGFSVGLAVSF
>SEQF1086_CAE41946.1 probable two-component sensor histidine kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRAWAVLAWLWLALPAAVLAEPRHVTTAQFLLQDEAAAAAPDLVPARGPPGDWQSVALPHAGLQRRVVPDPQAGDAALA
WYRLDLDAGGVDDPVLYLPRWQTVGRLAVYGDGKLLYRSGGSAQWSGFNRPVWLPLAAGGAPPATLLLLRISSLDGAGAG
LSTVWVGAAGELRWRYELRRWLQQDLPYLASAVFLALGLFALGVWAVRRKESIYGLFFAASVVFYLRCLHYHAGPFQLLL
DDEWFSWLTITSVGWLAIASYFFAFRLHGRAYPRSERAMLAGMGALTAAMLPVWQIHPHLVLLAPLAYLGITVVALFACL
LAVWGAWRARSRDGLVLACWNLAAIPVAVHDMLLQNYRLSMEHVYLLPYTGIGMFVIFLYVAYRRYVNALAQAAGAQATL
QRRLAERERELERSHRRLREIERTRILAGERERLMQDMHDGLGSSLVSALRMVQHGNSSEGAVAQVLQECLDDLRLTIDS
LEPAQTDLALLLATLRFRLGPRLQAAGLALDWRVGPLPPVSWLTPPAALHVLRILQEVFTNILKHARARRLTVSTRLEPA
HAVIAVIDDGAGFRGGRPAPAAASPGRGLSGMQARIL
>SEQF1086_CAE41947.1 response regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQTCTPARPAGSLRIAIVEDDPAFRHAVVAAIAHEPGMSVLAQAQTCADALAMLQGPPADVLLVDLGLPDGSDIDVIWQA
RRLWRDCGIMVNTMFGDDVHVLRSIEAGACGYLLKDSEPAGIVRDICALRDGGSPISPLIARQLLDRLREGLPPAEPPAA
TALSPRERQVLERITLGYTYDEIASELEVSRHTVQTFVRRIYRKLQVHSKVDAINAAPGLRPHE
>SEQF1086_CAE41948.1 autotransporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPARAARAGLLLAGALACSAAAHAELLGVDGGGPSGGAGASGPGLAGQPGNGPAPGLGGDRTMPRPGGNGGAGGGAGAAS
GGSELIHYGGGGGGSDSGGGGGIAIIDPMGAAGGNGGGVAQALSAGADLQSSRGGAGDDGGAMSSGSEPGGGGGGGGSGA
AVLAGGGYRALAVSIVGGRGGAGGAGFESGGGGGGGHGIRIDAADVRIELLATQAAGGQGGDGGAGSGSSGGGGDGGHGL
AGAANDLRLHVAADSTLRGGDGGASRPVTHRAGAGGPDGTGLSLSASRWQVKTAGLIQGGNGGRGEASREFDGGKGGAGG
AGLALAGNMGTLHNRGRIQGGQGATGGTSVLAAPGAAGAGGVGVRIAGNGNRLVNAGRIAGGASADGQQADAVRIDGAGN
TFELHAGSVLQGNAVATGSANVLALGGAQPGVFDVSALAAGAPAAWSGVPRYAGFAAYEKTGAGTWRLTGGNAAALSWTV
RAGRLAVDAEMAGSAMTVAAGGTLGGTGTVGDTTVRAGGALAPGNSIGTLRVAGDLVFEPGSRFEVEADPDGTASDRVVV
SGTADIRGGAVLHVGPEGGFEARQRYVILTAGQRRGQFDAVGSGYAYLAPALSYDATSVALILQRRGAPGSGDLAFADLA
DTANQRATARAVETLPAAHPVYRAIETLPEGAPPAAFDALSGEVHASTRSALLTGARQAQRVNLGRLRDHLGLAWQAGAP
MAASGGAPGAAALPGAPSPAWAEVVGAWQRLDGDGNAAQVRQHVGGLFVGADTALANGWRVGGSLGFTDGRIEVDARASQ
TDVASYTAALYGGRAWDAGAGRLNLLAGAAYTWHDIASERRVDVGDLRQELTADYGASTTQLFTELSYAMPLGMTAELEP
FAGLAWNQLRVRGFTETGGSAALSGASSRDDMAITTLGARVAAPLGAGATLRAMAGWRHAFGDRTPQSTLAFGQGSAFEV
AGAPIARDAALLGVGAGIEVARNAFLDAAYAGEFGGGNRQHTASVVLRWRF
>SEQF1086_CAE41949.1 putative DNA-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKKDNTVFNDLQASLKQAVAIRQGKMPPSRVFKVETVDVKATREKTHMSQTEFAKAIHVSVRTLQNWEQGHRNPTDPAMA
LLKIVASAPDIAVRALRTA
>SEQF1086_CAE41950.1 conserved hypothetical protein (partial), partial [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
RGGGGIRKMHYGRQGTGKRGGIRVIYYWISQDCQIYMLAAYAKSKKINLTPDEIAALRELVKEL
>SEQF1086_CAE41951.1 glutathione S-transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRWTFYTAPGTCALATHIALHEAGADFDLVKLDFGATQQQSPDYLRVNPKGRVPALATEHGVLTENPALLAFIAQSFPQ
AQLAPLGDPFAFARMQELANYLASTAHVAHAHKRRGARWADDPAAHEAMRAKIPENMTAIAGYLESQIIGPWALGERFSV
VDGYLYTVGSWMEGDSVDMTRFPKLADYLARVGARPAVQRALAEMNG
>SEQF1086_CAE41952.1 alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTITITPIQGEIAASIGGIDVRRGVTDDQVQAIERALDQYIVVVLRGQPLDDDLQQDFIQRFGPAIVTNTIKELTSRRSH
RPHLLDITTVDEHGEPLKDRSFMKLYMLANQLWHSDGSHIQPPTRLTALSTRMLPSDPPDTEFADMRAAWDALPADQQEQ
LLDLQAEHSIAHSRTLLGMEVDQFSDDSLNRRPPVQHSLVRTNPRTGRRSLYLSGHASHIIGWPVEQGRALLQQLTEHAT
QRQFVYAHAWQMDDLVMWNNAASMHRALPYTGTEPRLLRWSGVTELEPV
>SEQF1086_CAE41953.1 probable LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLPTPVQIETICTVDRLRTFTAAAAYLHTTQSAISARVREVEEMLGVILFKRNGRNVETTLDGRRFVEATAPLQQRLAD
FMGTFLEPHAISGRIRLAVGNSSMGRVSSMLSAIEKVLPNICFDLEVMYAAEILRDLEAGRTDIGVFHTPSRLDSKLFIH
TSIGTEPTQWLMSGALRADFERRSPGFGLQTLLDHCQIWCVPKPAFYFDQAIESIASHGGKIRRLSTSGNMPATVDILLA
HGGIGLITDHLSQAHCQNGSLVAAFDGISPPGFDYVLACARSRQSHLLGTVMEIATAAVHAGAAAPALRPVPAR
>SEQF1086_CAE41954.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLPRNILLACSGIVGMLAVPAHSDQAYPSQPIRIIVPIAAGGSTDVLARSVAQELGKTLGATVVVENKPGAAGAIGAQAV
ARAAPDGYTLLLTSPDPITVLPNYKSNLHYDAAADFAPIQLIAEINYVFATRTDFPAQDLAAFLKMAQQSPGKYTFSSAG
TGSNTQLVTEMLRQRLGVDMVHVPYQGSGPALIAVASGEVDVQATSMPSMKALYDAGRLKALAVTSEQRFKALPAVPTMQ
ESGVNDFVLSAWFGVFAPAGTPAPIQEKLDNALGKVMSSPEIRTRLDSLSMTARPMSLAAFGAYLDTERQRWKTVIDIVG
LKD
>SEQF1086_CAE41955.1 probable short-chain dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNDRLPVAVVSGAAHGIGWAISRRLAEEGHEIVLLDRDEAALEARWQALRATGHAARVCQVDLSDRAQVLALARRLSEPL
QRVRVLVNNAGISPKRNGARIGFAAVALELDWRPAVETNLTAALILSELVIPAMKSHGRGRIINIGSRVGRSPTGTSALA
SMPYLVTKTAMQGMTRAVARQLAPHGITVNGIAPGRIQTAMGSNVQPALHAAILADIPVGRWGAPADVAHVAAFLASEHA
GFITGATVDVNGGALML
>SEQF1086_CAE41956.1 lactate dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTHDALQRRALCIDDLRAWARKALPKGLFEFVDRGTEDEFLLSRNRRSLDELRLLPRVMRDVSRRNCSTHYFGQASSMP
MIIAPTGAAGLLAYEGEYLMAKAAARAGIPFVLSTASIVSMERVAQAGGDLWFQLYMLPDLGASYRLMDRARNAGYRALM
VTLDTPVSPNREYNVRNHFTLPMQISSRNALDVMRRPAWIWNVFFRYLLRNGVPMLENYPDEYRQRLDASGKGRMSLPKT
DSITWESLRALRRHWRGPLIAKGILHPEDARMARDCGVDAIVVSNHGGRNFDAAATPIEALPRIVDEIADKAEVFVDSGF
RRGVDVAKALALGARGVLLGRAPLWGVASAGEPGALHALELMREELLRSMAFLGCESLAALDRGLLAPATLPRNGGWP
>SEQF1086_CAE41957.1 putative hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLGRFSYRHRAAAHVNLAAIVRRDGQECALDLAAVRAARPELALPASMEAVIRLGRAGVDRCNEALAWASREGAASWFT
PAADLAWRLPLEVGCCVAAGRNFASHVNEGKAFWDGQASAAGLNQDMPAGFIKIASVMTPHDSAVARPCGVLAFDYEVEV
AAVLGGPVPLGTPPERALEHVFGYTLFNDLSAREWARAEMKNQMIAMGKNFPGAGPLGPWIVTADEVPDPAQLELSLSVN
GEPRQHGSCKEMIFTFAQLIAHWSRIGLGAGELIASGTPEGGAISRKPDPAPFFLKPGDIVEAHCPQIGTLRTRIV
>SEQF1086_CAE41958.1 probable short chain dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGRVACIAGSGTERGRAIAARLADEGWKVVQLDGPDGQDARAASPALGIDLGAAADIATIAARLGVDYDEVGAYIHCACA
PPAGVATEPSVALALQAWDAALAIHLEAPLLISQLLVRPMLAKGWGRVLFVGEHADNIPHGAQETAFACSMSGLIGLARS
IASETGPHGVTANVILPGPLQPEPDPFGLGPRCTYETDGFAATVAFLLSDGARLVNGATIHANGGQAMR
>SEQF1086_CAE41959.1 3-oxoacyl-[acyl-carrier protein] reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQSVGTALVTGAAAGIGRAIAERLAQDGHDLVLLDVDAPGLEATKAVVAGHGRRADVHCIDLGDLQAVRRFAAAHEAAHI
SILVNNAAISPKRAGRRVTLSETDLEQDWLRVLQVNLTTPLVLAQMAAAGMQRARWGRIVNISSLAARCPSGLASLGYTT
TKTGLLGLTRALAQELAADGITVNSIAPGRFATAMGENLEPEARQRIVAAIPVGRWGEPPEIAGLVSYLCGPQTGFITGA
VLDINGGAVML
>SEQF1086_CAE41960.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRRIPRRLIAALASFSFLIPGAGSHAADLPESYPNRPIKLLYGFSTGGPADYVTRLVGRRLAQELGQPVIVESKPGASS
TIATNLVAQAPGDGYTIMMGAMNQAVNPSLLPDLPFDQQKDLRAIAIAAFTPNVLVVSADSSIASVDEIVARARRAPGSI
SYGSSGVGTSVHLAGALFGTATGTELIHVPYKGIAPAKLDVVAGRVTMLFDSVVSAKKLIDAGRLKAFAVSSANRSALLP
DVPTMAELGWQDFDVSPWYAFFAPASTPDAIVERLNAIIVATMSDPQEQANLLAQGVEPRTSTAREADAYVAAEIGKWGE
LVKRLELKPE
>SEQF1086_CAE41961.1 probable LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVQRSLAALSHLKFRHIALIQYLLQEGTLRKAARRLSISQPAATAMLSDIENLLGVQLFTRSRQGVAPTAQTLALAPRLR
ILMNDFDELGAMLDRLDTGEHEVLRVGVVPQAFTVLLPRAIEGFRQAGGCHLHTVEGSAQDLLARLLAGELDCVLGRLPP
DVAKLGRDIASLTFVNLYEDDVCVVCGPDHPAARLKKPGYARLAQCDWVLQRISSSVRQALTEAFLRQGLLLPHPVVETP
TYTQALDIVAATRLLTAAPRHTAMAHARSGRVKVLDIALGVAPMQVCLILRKSAEAHPQIVRFRSVIEAMPMRFPGA
>SEQF1086_CAE41962.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTVLRILLLGAGLLGAAAASAEWPADQPIKIIVPQAAGGTNDTVARLMGVELGKALGQTVVVENRPGASGAIGMQLASR
SPADGYTLAIASDTASILSATRKMDWRLDHDMAGVAMVGDQPIGVAVSMRAPYASLDELLAAARKEPGTIAFGTSGLGTS
QHIVGEWLTHLAGVQMIHVPYKGGGQAVTDLVSGTTPAAVLGFAPLLGQARSGGIRIVAVTTAERNPAMPEVPTLTELGY
PQITRSQWVGVVAPRDTPPAIVKRLSDAMAAIGAQPAIQDKLREIGLTPKSMDAAQFDAFIHKDVADWGRLVTELNIKLD
>SEQF1086_CAE41965.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE41967.1 putative NADPH-dependent FMN reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSEVLADLPNIDPSRFKQPSAAELFPPGRATHAPRFLLLYGSLRERSYSRLVAEEAARLRRALGGETRLFNPSGLPLVDD
ASEDHPKVRELHELVRWAEGMIWSSPERHGAMSGLMKTQIDWIPLSMGAMRPTQGKTLAVMQVSGGSQSFNAVNQMRVLG
RWMRMLTIPNQSSVAKAYQEFDEAGRMQPSPYYDRVVDVAEELMKFTLLTRDASPYLVDRYSERKEAAETLSRRTAQARI
>SEQF1086_CAE41969.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPGAPVRVVGILGTAQTLAWASSYYLPAMLADPMARDLGVSTPTVYAAFSAALVASALIGPWTGLAIDRHGGRMVLAGTS
LLFALGLGMLGAAQGLWTMVAAWLVMGVAMGAGLYEAAFSSLVRLYGHHARGAITGITLIAGFASTVGWPLSAWMETLFG
WRGACLGWAALHLMIGLPLNAWLPKAVAAETPSPDAPAAQEGTLPAARPGPQGLATALLAFVFAATWFISTAMATHLPRM
LQATGATLAAAVAVGALIGPAQVAGRLLEFGLLRHVHPLLSARLAALTHPAGVAVLLAAGPALAPLFAILHGAGNGILTI
AKGTLPLALFGPRGYGARQGWLMMPARVAQALAPFLFGLALDAWRANALWLSGGIGLAACAALLVLRARPDPIKP
>SEQF1086_CAE41970.1 putative transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAEQAVSSLGALAHAQRLSVFRALVVAGPAGLTPSVMADGLGIARNALSFHLKELAHAGLVSVEQQGRNLIYRADFFRM
NALLGYLTKHCCQGATCEVSDSRKNTAGCDAGARRA
>SEQF1086_CAE41972.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMKGICAAFAFAALAASWQGPAQAAFPDQPIKLVVPFAPGATIGPLAQLVSEQLSSDLGTPVYTEFKTGAGGNIGADIVA
KSPGDGYTLLLGTISILTINPSLYPDLPFDPVKDFKPVSMLVTTQNILVVNPESKIQSVADLADYARQHPGQATFGSSGT
GSTMHLAGELFSTTAQVKMTHVPYRGGGPARSDLLGGRLTLMFSDLSAVPMVQAGKLRALAVTGSQRDGRIPDIPTMQES
GMKGFDVEPWYGLVAPAGTPDAVIARLNASVRKVFDKQKVRDALQNIGLRPASDLSVAYMAGKIDSDLGKWAPIVKSVDM
KTN
>SEQF1086_CAE41973.1 probable short-chain dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTQATAGDGAAVVAIAGGMGALGRALAQRFKQRGDQVVVLDQATDAAGLPQAGADLALLDVDLNDVASTRHAFDTIARR
FGRLDALVSVAGGFHHETLAEGKVKAWDHMYALNLRTAVVACQAALPLMLARGAGHVVCIGSDAIGRAHAGLGAYAASKA
GVAELVRTLAAETRDQGIAANAVLPGTLDTPGNRRAMPDADFSRWVSLDAAAALILFLASPLAAQINGACIPIVNRC
>SEQF1086_CAE41974.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGPTDMRVSTRQLQAFLLVAEVRSFTRAAEALHVTQAGLSSMINELETQVGIRLFERSNRATALTQAGTQFLPYARQAVE
SLNKGMLELSALNRRQQGGICVGVSPLIASTVLPAVMREFQQCTGRSCEVVDAELEVLHDMVETGRLDATYGTYMRRASR
LKSEYIFGMALRLAGPGRLIPPGLEIAGVEDWARQHDIVLWALPDSNAVQQVVDRYLLEVGAHALRRQEVCHVATVASLI
SAGMGMGFVPTFLADFYDRDTVGQIALPQGAPAVDFYCTSDASNPASSSIHVFSRLLAAHCSAAA
>SEQF1086_CAE41975.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLYYRISFVLSVLALAAWAIAVTLYKAPRHGDGYGPDPLGVLLFLALWPVGLLLAHSGLLACLVRGQRPASILQGRYGV
AIHLALGAGFLAYALYRV
>SEQF1086_CAE41976.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR
>SEQF1086_CAE41978.1 putative pH adaptation potassium efflux protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLLLVLALPFLGSLCAALLPANARNAEAWLAGLIALACTLLVASLYPQIAAGGVIRADLPWAPALGLQFTLRMDGYAWL
FALIVSGMGALVVLYARYYMSPEDPVPRFFSFFQAFMAAMLGVVMSGNLIQLVMFWEMTSLASFMLIAYWHHRLDARRGA
RMALTVTGAGGLSLLAGVLMLGHIVGSYDMDQVLAAGDIVRADPWYPAVLVLIALGALTKSAQFPFQFWLPNAMAAPTPV
SAYLHSATMVKAGVFLLARFWPMLAGTDEWFWIIGGAGLCSLVLGAYAAIFQQDMKGVLAYSTISHLGLITLMLGLNSSL
GLVAAIFHMVNHATFKASLFMAAGIVDHETGTRDVGRLSGLYGAMPITATLAMVAAASMAGVPLLNGFISKEMFFAETTF
VSGDVLVRWGLPLMATLAGAFSVTYSLRFILQVFFGPPAEDLPRAPHEPPRWMLLPSALLVMVCLVVGVLPGVTLGPILH
LAASSILGEHMPQYSLSVWHGFNLPLAMSFVALTAGVLLYLALRARQRAHPGLVPFIYRFDGRRTFEYLLDASSVAAAWL
LRYLASSRMQVQMLVIVLGTLWVAWLPLRAGGWLAGQARLTPADPAFAILWVVGAACALGAAYQAKYHRLASLTLSGGAG
LITCLTFVWFSAPDLALTQLAVEVVTVVLLLLGLRWLPRRIQTGGDEDRPDLRARVRRLRDLGLAGVAGACMAALAYAVL
TRPVGDTISSFFTERALPDGGGTNVVNVILVDFRGFDTLGEITVLGIVALTVYALLRRFRPAPESVELPHQQREQDGMPT
VDETGERPAPDTKSPLPAGPMMIPAVLVRLLLPVAVLVSVYLLLRGHNLPGGGFVGGLVMATAIILQYMVGGVYWVESRS
RLNPQHWVGLGLLAAGGAAVSAWLALRPFLSALAWDVALPVVGHVHLSSVLLFDLGVYMLVVGATVLVLVALAHQSLRAQ
RQAAVEAQAVAQTGSPA
>SEQF1086_CAE41979.1 putative pH adaptation potassium efflux protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEVVYALAIGVLAGSGVWLLLRPRTFQVIMGLSLLSYAVNLFIFGMGRLTVGRPPVVSASAPVDAAAYADPLPQALVLTA
IVIGFATTALFLVVLLASRGLTGTDHVDGREPES
>SEQF1086_CAE41980.1 putative pH adaptation potassium efflux protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIDWLQHLPIYPITVPLIAGALMLLLPDTQRKTRAGIGLLSSLLQLASAIALLSLAAGAGGIWPDGIGVYLPGDWPAPFG
IVLVVDRLAAVMLALTAVLGLAALIYSLARWDRAGVHFHSLYQFLLMGLNGAFLTGDLFNLFVFFEVLLAASYGLMLHGS
GIARVTAGLQYIAVNLVASFLLLISIALIYGVTGTLNLADLALRAGTLTGGERSLFEAGAAILGVAFLVKAGAWPLNFWL
VKGYGSAAAPVAALFSIMTKVGIYALLRIGSLLLPTGAPAAFSLDWMFAAGLATLVFGGLGLLANQQLEKLTGYCVIVSA
GTLLTALGMPGVTLTGPALFYLISSVLATGALFMLVELIERTRSFGANVLAVTMDLFDLDDPSTPNRSDDVVGVAIPAAM
AFLGLAFVSCALLVTGLPPLSGFVAKFSLLSAAVTAANTPSVALDAWVLVALVLLSGLAGLIALGRVGIRIFWSSDDRVT
PRLRLMEAGPVAVLLLLCVVLAAGAGPVSAYLDAAAQSLDRPASYVNAVLAKQPARALSEGL
>SEQF1086_CAE41981.1 putative pH adaptation potassium efflux protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMRRYYLALLPLAMLALWLMLNQSASIGQLALGAALALWLGWASSRLRPLRGKPRSLWLLPGLAARVFADIVRSNVAVAR
LVWQRRPDFSPGFIAIPLDLHDPHGLAILACIVTYTPGTVWVDIIDGKLVLHVLDLQNEEAWIALVKQRYERTLIEVFE
>SEQF1086_CAE41982.1 pH adaptation potassium efflux system protein F [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMNIVLYWSASFALLCFALAMACAAIRLLRGPTAQDRVLALDSLYVSGMLTMLVFGIRAGTPVYFDIALLIALFGFVGST
AMAKFLLRGEVIEP
>SEQF1086_CAE41983.1 putative pH adaptation potassium efflux protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDVDIPLWAGIPAAILLVLGGLLTLAGALGMLRFGHFYARIHAPTLGNTMGACSVLTASILVFSSLSMRPVVHEFVIGM
LLVLTSPVTGMLLMRAAVYRARRADDSA
>SEQF1086_CAE41984.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE41985.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKIRIQRWCGALALGAGSLMAFGAHAAGTGSGQSQYQMDVQRCNSGDTSQDRATCLREAGAARQESQRNRLDDKQEGRY
QDNAMMRCKNLPASQQQDCITQMTSGNTTTRGSVGGGGVLRETVIQVPAGTPGRPMPGSQMPSGQMPGAAPGGLQPPPAG
TVAPPPVMR
>SEQF1086_CAE41986.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDVIALVFDFDDTLASDSTTGFLESIGVDTASFWKDQVDPLLSQQDWDPVPAYLYQMIQLSRQGSHGLITRERLREWGV
RLALHDGVQTLFGRLRAAVRAEHPKVQLEFYLISSGIGDVVRATPIAHEFTEIWASEFVYGEDGGISFPRRIVSFTDKTR
YLFHIQKGLIGREYRNKPFEVNRKVPEDRLRVPFDQMVFVGDGYTDIPCFSLIRSAGGFAFGVWDPKHRDKRSRAWGFIE
EGRVSNLNQARYDEQAELYQWLEEAVTSLAGRIALKSRVYRG
>SEQF1086_CAE41987.1 putative zinc-binding hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALALEQAQEAARLGEVPVGAVVVDAQGEVLGTGYNRTIIDRDPTAHAEIVALRAAARRLDNYRLPGVSLYVTLEPCVMC
IGAMLHARLARVVYGARDPKTGACGSVLDVGAVGQLNHHTTITGGVLAEPCGELLRGFFRARRAKESPV
>SEQF1086_CAE41988.1 muramoyltetrapeptide carboxypeptidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTKKKNPPASHGHDHHEHHGHEPGHVCDAGCAHAPAQASGIYLVSPSSAVRDAAELELACQRLAAEGFQTKVDRAALAVH
QRFAGTDKQRAAGLQRAIKQKHPIVMATRGGYGLIRLLPMIDWRAMADSGKRFVGMSDFTAFNLALLAQTGAVSYSGATA
VRDFGLAKTDELTVALFGEIMRGELEILSFETRDADAFDGRGVLWGGNLATLVSLLGTPYMPKVRGGILFLEDVAEHPYR
VERMLAQLWQAGVLERQKAIVLGSFSDYRLAAHDNGYDMHAVVGWLRKTVKVPVVTGLPYGHTDTKATLPIGKKVGLATE
RGMAHLVIDEHTH
>SEQF1086_CAE41989.1 probable enoyl-CoA hydratase/isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLQTLEVAYGPQTAVVWLNRPDVRNALDPRMIAELTETFMALGADNEVRAIVLAGRGKAFCAGADLNWMRRSAQAGDAEN
RADAQTLATMLHTIYTCPKPTIARIHGPCMAGGMGLAAACDIAVASHEARFALTETRLGLIASMISPYVLRAMGARTASR
WFLSAEVFEATEAWRIGLVHELCEADRLDGQINELLGSFMLTSPHAVAQAKRLIRDVAGAPIDAALLEETAARIAEQRAS
ADGREGLASFLEKRQPAWVPRQDT
>SEQF1086_CAE41990.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKIHKALWFGLSCIGLVLLMIAFLTPWDHLATGHIGLLMLALIVVAIMLGFPTAFTLMGMGVLFTFLAYFMQHEDGARAV
RQTLDLMVQRTYATMTNDSLISVPLFVFMGYLVERANLIERLFRSMHLALARLPGALGVATLITCAIFATATGIVGAVVT
LMGLLAMPAMLKAGYSVRLTAGSITAGGCLGILIPPSVMLIVYGATTGVSVVQLYAGAFFPGIMLAGLYVLYVMVVAKLR
PDMAPPLSKEERHIPLQPGAEVLRQQGHRHAVPGLLAGLFKRRDPQVTGSFLARNLMLVVAPLAAFVLITGATYDTLTEP
PVVYEIPDELRLGSGDSFDSGLAEPPSEDGGLAEPPGAAAAPETAAAQVEAAEAAEDAAAERLPAPYGFWIFFAVCVALL
AVFYALLNWSRLEVFRLLMSSFFPLALMIVAVLGSIVFGLATPSEAAAMGALGGALLALAYRRLTMPVLRESVYLTAKTS
AMVCWLFVGSSIFSAAFALLGGQGIVEQWVLSLGLTPIQFMLLAQIIIFLLGWPLEWTEIIVIFMPIFVPLLKAFGIDPL
FFGLLVALNLQTAFLSPPVAMSAFYLKGVAPPHVTLNQIFLGMMPFMGIQLLAIFLLYMFPGIGLWLPTVLYR
>SEQF1086_CAE41991.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLRLIRLVDRLSTFVGQAFAWLIVVLTLHICWEVSARYILNTPSAWAFDLQLMYYGILFMMAGAYTLAKNGHVRGDILYG
FLPPRVQAGLDLLLYILFFIPGVVAMVWAGWYYAGESIAIREHSSLMANGPPIYPFKAFIPIAGAFLLLQGLAEIARCLL
CLRKGQWPSRAEDVEEVDVDKLKEMVHVKDEDIAELDQYVEKGEQTR
>SEQF1086_CAE41992.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQHVTQSRRKFISGAGAVAGTAVLGFPAVTRAQGSPVSMRFQSTWPANDIFHEFAQDYARKVNDMAEGQLKIEVLPAGAV
VKAFDLLDAVSAGTLDGGHGVVAYWYGKNTAVALWGSGPSFGMDANMLLAWHEYGGGKELLTEIQKAMGVNVTSLMYGPM
PTQPFGWFKKPITKADDVKGAKFRTVGLAIDMYSAMGAAVNALPGGEIVPALDRGLLDGAEFNNASSDLALGFQDVSKIC
MLQSFHQSAEQFEILFNKNKYDALPKHLKHILAYAAQAASADMSWKAADRYSKDYIKLQKDHNVKFYKTPDAILQQQLKI
WDEMIAKRSAENPLFKKVLDSQRQFAERAGRWSNDTNVNFRMAFNHYFARKQPA
>SEQF1086_CAE41993.1 probable ATP-binding ABC transporter protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MISTANLTIQFGPKPLFENVSVKFGEGNRYGLIGANGSGKSTFMKIIGGDLEPSAGNVSLEPGVRLGKLRQDQFAFEEVR
VLDVVMMGHTEMWAAMSERDAIYANPEATEDDYMRAADLEAKFAEYDGYTAEARAGELLLGLEIAVDQHNLLMREIAPGW
KLRVLLAQALFSNPDVLLLDEPTNNLDINTIRWLENVLNGYQSTMIIISHDRHFLNQVCTHMADVDYGEIRVYPGNYDDY
MLASTQARERLTANNAKAKERIVELQDFVRRFAANKSKSRQATSRLKQIDRIKADQVEVKPSSRQNPYIRFEQNKVMHRL
AVTIEKLSKSYDQPVIRDFSAMVDAGEKVAIIGANGVGKTTLLRMLATDLAPDSGTVKWSENADIGYMAQDVSDQFQQGD
INLFDWMAEHRQPGDDDQSIRSALGRLLFSGDDLPKAPKVLSGGEKNRMTFGRLMLGRHNVMLLDEPTNHLDMESIESLQ
FALEKYEGALIFVSHDREFVSGLATRIIEILPDGELVDYRGGYEDYLASRGIEA
>SEQF1086_CAE41994.1 putative ABC-transport protein, ATP-binding component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNLTFDHVHKSFGSLNVVEGFSSEFKTGELVALVGPSGCGKSTLLHLAAGLEQASQGRVLADGKPVQGPHPSRTLVFQEH
ALYPWLTLRDNVALALEFQNAPKAQARQQAVHWLERVGLGGFDAYYPHQVSGGMRQRAALARAFIAQPQTLLMDEPFGAL
DALTRLSLQDVLRQLIEQEKPSVVLVTHDVDEALFLADRIVVFSQRPARVLREFNLAHRAKSHDLSDLASEKREILRLLG
IEVDSHGHGHGPKVALAA
>SEQF1086_CAE41995.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLKQWLSLPLAAALLAAAPAMAAEKFRVGYLRVMDDAQAIVAQEGGYYKKAGLDSELIEFKSGTDLIKAIVGGQLDIGV
LGFTNAVAWASKGADLKVVGGAQQGYHSLLVRDDSDIKDIAGLKGKTLASQAEGSTADVVLKGVVLKEGKLGADDVNVMG
GSPAVAVQSLVGKRVDAAFLFEPYDRIAQLVAPVKQIYEVGQAWPFPCMVVITSGDVLAKRKDDVWKALDAQKEAIDLLQ
NKPADASRLIASYFIAEPTLKTLTRGELPRETVISEAISTQVFTPKLTDKDTNRLQEIADILQAQGSLKTRDGKPYDVSS
IVDLSWQEARKL
>SEQF1086_CAE41996.1 putative permease of ABC transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSSTRVTGARKHLAGVLGVLFILALWQAAAWVLPDFLMPGVPTVAQRLVEDLGQASFHQSLLGTLGRLGAGYGLALAAG
IGFGLVAAVLFFFREVLRSAIVILQSIPSIAWVPLFLIVMGFGNTPIIVVVALSAFFPAALSVMNATESVQRVHVSAARV
MGATRWGLIKRVYLPAVMPELITGAQLAFGNAWRALISAEMLIGFGKGLGRSLAYSGEIADMTGVMTNILVIAVLAALID
QFVLENLKHRLLRYQYV
>SEQF1086_CAE41998.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEATRAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE41999.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMHTLAAACRHQEEIKKSRFAAYAAPVGTIAEAMAHFAAHSDPAATHNCWAYRIGNEYRFNDDGEPGGTAGRPILQAIDG
QGLDRVAVLVVRWFGGIKLGAGGLVRAYGGCAANCLRAGERLPVIALATVRCRCGFAELPLLQARLAQAGASVRSETFDA
DGAQLEFDVSRAALEELARTFANITRGRGDWDVQA
>SEQF1086_CAE42000.1 thioredoxin 2 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSIVELTKDTFQDAITPDGTLIIDFWAPWCGPCRGFAPVFEQAAEQHPDVTFAKVNTDVEQELAGALGIRSIPTLMVFRE
KVLLFSQPGALSAGQLGELLTKVKEVDMAEVHRDIAQARENGEGEQA
>SEQF1086_CAE42002.1 permease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLEKLFQLRDHATTVRTEIVAGLTTFLTMSYIIFLNPDILSSTGMDRNAVFVATCLAAALGSLIMALVANWPIGMAPGMG
LNAFFAFTVVKTMGYTWEQALGAVFISGVIFLFLTISGIRAWLIRGIPHSLRSAIAAGIGLFLAIIALSNANIVVAHPAT
KVTLGDLREPGPLFAILGFFIIAALDALRVRGAILIGILSVTVLSMLLGYNQFNGIFSSPPSLAPTFMQLDILGALHTGF
VHVILVFVLVEVFDATGTLMGIAKRAGLVPEDRPNRLGRALFADSTAIVAGSMLGTSSTTAYVESASGVQAGGRTGLTAL
VVALLFLAALFIAPLAGSVPAYATAPALLYVAGLMMRELIDIDWNDVSEATPAALTALVMPFTYSIANGLAFGFISYVVL
KTCTGRIREVHPATWLVAILFIVRYAFFPE
>SEQF1086_CAE42003.1 probable glycoprotease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIILGFESSCDETGVAAVCTERGLLAHALHTQIAMHQEYGGVVPELASRDHIRRVVPLTRQVLAEAGLTLADVGAVAYTA
GPGLAGALLVGASVAQALAWSRALPAIGIHHLEGHLLSPLLAEPRPEFPFVALLVSGGHTQLMLVDGVGRYELLGETLDD
AAGEAFDKSAKLMGLGYPGGPALARLAEQGDASRYDLPRPMLHSGDLDFSFSGLKTAVLTRVKAATRDGGELGEQDRADL
AAATQAAIVEVLAAKAIRALKQTGLRRLVVAGGVGANALLRAHLARALKPLRAEAYFPPLSLCTDNGAMIAFAAAERVKA
GLADLREGDHAFTVRPRWDLADIQAG
>SEQF1086_CAE42004.1 transposase for IS1663 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF1086_CAE42005.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPATMVLTAPSLLSSSALIVLAYLIGSIPFAVVVSKLMGLQDPRSYGSGNPGATNVLRTGNKTAAALTLLGDAAKGWFAL
WLARALVPELSWGAYALVALAVFLGHLYPLFLRFKGGKGVATALGVLMAIEPWLAVATIATWLIVAVFSRYSSLAALVAA
FFAPVYYVFGSGAAWHARLEVGLAIAVISALLFYRHRANIARLLKGTESRIGKKK
>SEQF1086_CAE42006.1 stationary-phase survival protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRILVSNDDGYNAPGLEALVEALSGLGELTVVAPETNHSGASNSLTLNRPLTVRTAANGFIYVNGTPSDCVHVALTGLMD
ARPDLVVSGINNGANMGDDTLYSGTVAAASEGYLFGIPSIAFSLIEKGWQHIESAARAARQVVERQIAQPLAAPVLLNVN
IPNRRYEDMKGYAVTRLGKRHPSEPVVRTTTPYGDTVYWVGPVGLAADATPGTDFHATAQGQVSVTPLRLDLTQHSQLDD
VRNWAEPLCVNA
>SEQF1086_CAE42007.1 protein-L-isoaspartate O-methyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNSDRLRQAMVQRLRAQGIADERVLNAMAAVPRHLFVDEALASRAYEDAALPIGHSQTISQPWVVARMIAAVCEDRAPAR
VLEVGAGCGYQAAVLAQIVREVHAIERIRGLYELARGHLRALRLATRVRLIHGDGMLGVPGVAPFDAIVVAAAGLAIPQA
LLDQLAPGGRLIAPEGSTHQRLVLIERTGATAWSRKELEAVRFVPLRAGIQS
>SEQF1086_CAE42008.1 putative peptidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLNGQLQLTESQSVAGASAAAASRPVLWAGVLAIALLAGCASKGPRAPVVDLTGQPGASGPTDGSYVVKPGDTLYKIARA
NNVDIENLKRWNNLTDPNQISVGQVLRLSSSGAGGAQTTPVTSSKPQPKPLDQGSAETPAGGMEAGAGGETGGATTPPAA
TVPDPKPARAADAAVINWGWPANGAILQTFNSNTKGIDLAGSLGDPVIAAADGKVMYSGNGVRGLGNLIIINHQNGFITA
YAHNRALLVKTGQNVKRGAKIAEIGETDTTSPRLHFEIRRQGTPVDPMQYLPPR
>SEQF1086_CAE42009.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTPTLVFDLETIPDVAGLRRLNDWGGEVSDLEVVERAFAARREAVGHDFLPLHLHQVAVVGCVFRDDQGFRVKTLGQPDD
PEAALLSGFFKTIERYTPRLVSWNGSGFDLPVLHYRSLIHGVPAPRYWDTGDEDRDFKFNNYISRYHNRHIDLMDLLAKY
NGRANAPLDELAKLCGFPGKLGMDGSKVWEAWNQGKADEVRAYCETDVVNTWLVYCRFRFLRGELDRVAYDAEVALVRDT
LAASDAPHWKEYLAAWDAA
>SEQF1086_CAE42010.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRHAIRSTLAGLTLALSAGVVAAPALAATQEGPAAGHMKEQGRHHHKKMMRDGVWLPGVGPLSKAQIESLKLDAKQQGL
VDQARQAQRDVHKSRRDAGATGRDALKAQLDSGKLDPRALLAESDKRHEQFRAQATQVRDKWLAVWDSLNEAQRGQVTEI
AKANQARMSERHARMQERMQKRHAEGGQSAAPAGAATAN
>SEQF1086_CAE42011.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKKPLFALPLVLAVCAAAGARAEPTDLGAGFSLSGNAAMVSDYLFRGYSQTDFRPAIQLGFDLTHTSGLYLGNWNSNVSD
FVFTDGNLEMDFYGGWKGEAGGGVGLDVGVLHYYYPGSSSPKGGNYNNTDLYLGVSYANYSLKYSYTPGDFFSTPDTKGT
WYLDGTATFDLGDGWGLVGHLGYQKLKKAQDMDGDALGHYVDYKLGVTKDLSGWVLGLAAVGATRDNWLPTKNGHPSGRL
GAVLSVARTF
>SEQF1086_CAE42012.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVDVLNIESLDLEARGIAHRDGKVLFVEGALPGERVTVQTVRRKPSYEIAKVEEVLRPSSQRVAPRCPHFGVCGGCAMQH
LAPAAQVAIKQRALEDTFWHVGKLKPARILPPLYGPTWGYRYRARLSVRVVPKKGGVLVGFHERKSSYVADMRECHVLPP
AVSRLLLPLRAMIAAMSAPDRMPQIEVALGDETIVLVLRHLLPLTDGDIAVLRAFAAEHGVQWWLQSKGPDTVHPLEREH
ADALAYTLPEFGLRMPYRPTDFTQVNHAINRAMVSRALKLLDVQPQDRVADLFCGLGNFTLPLATQGREAVGVEGSKALT
DRAHEAAARHGLGERTRFATLNLFEVDVQWLRGLGYFDRMLIDPPREGAQAVAQALSLLAPGERPRRIVYVSCSPGTLAR
DAAIMVHEGGYALRSAGVINMFPHTGHVESIAVFESLDEATVLQAQAQARQKAREEAERLAEAAAA
>SEQF1086_CAE42013.1 MerR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNIGDAAQASGISAKMIRYYESIGLIGPAARTESGYRVYGDAELHTLRFVRRARDLGFSVEQMNELLALWRDRSRASADV
KRIALEHVATLERKADELRQMADTLKHLAHHCHGDTRPDCPIIEELSNTGRR
>SEQF1086_CAE42014.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTIAFHVPDMTCGHCVKSITQAVQQAVPQALVQIDLAARRVTVEGAAAAEPVAQAIRAAGYAVQAA
>SEQF1086_CAE42015.1 putative glutaredoxin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLQNREGQRVPSVTFPVRENNAWKQVTTDDVFKNKTVVVFSLPGAFTPTCSSTHLPRYNELAPTFFAAGVDSIVCVSVND
TFVMNERAKDQESANVTLLPDGNGEFTDGMGMLVDKKDLGFGKRSWRYAMLVKDGVVEKMFIEPEKEGDPFEVSDADTML
AYVAPQARKPDQVVVFSKPGCPFCVDAKALLKGKGFDPIEIPLDNKVRGRVIGAVSGGDTAPQVFINGKLIGGFDALKAY
LA
>SEQF1086_CAE42016.1 putative pyridine nucleotide-disulfide oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTLHTDVAIIGAGTAGLAAHRAARAAGKRALLIEGGQYGTTCARVGCMPSKLLIAAAEAAHAAAHGGPFGVHIDGAVRI
DGAQVMARVKSERDRFVGFVLEGVENIPAEDKLRGMARFVEDTVLRVDGHTEVRAGSVVIASGSRPAVPPPFLALGDRLV
VNDDVFAWDTLPARVAVFGPGVIGLELGQALARLGVQVRVFGVSGSLGGITDPRVRQSARKAFQQEFYLDPDARVLETKR
VGDEVEVRYVALDNTERTERFDYALVATGRRPNVDGLDLHNTSLALDARGVPHFDRHTMQAGQAPVFIAGDANADAPLLH
EAADEGRIAGENAARYPDVAPGLRRAALGVVFSDPQIALVGTPFARLESGTFVAGEVDFGDQGRSRVMLRNRGMLRVYAD
IESGRFVGAEMVGPSAEHIGHLLAWAAQQSLTVAQMLEMPFYHPVVEEGLRTALRDAAARLAQARPQRLAA
>SEQF1086_CAE42017.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFSYRHAFHAGNHADVLKHAILVHVLDYMNRKEAPYWVVDTHAGAGLYALGSDWASKNAEHADGVARLWELSGLPPLLAD
YVARIRDYNTDGVLRHYPGSPWLTLDVLRERDRLRLFEMHPSESDVLVRNLERRNERTALRQTTVFAADGFEGVKALLPP
PTRRGLVLIDPSYEDKQDYRRTLTAVREGVKRFATGTFVVWYPLVQRREASEMARQLERLPVKSWLHATLTVRKPAADGF
GLHGSGMFLVNPPWTLHDALKPAMPLLARELAQDDRAGFTLQYRENP
>SEQF1086_CAE42018.1 glycerophosphoryl diester phosphodiesterase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAPLPAWPYSPYIAHRGGGRLAPENTLAAMRVGAAHGFTMFEFDVKLSRDNVEVLLHDDDVDRTSNGHGPAASKTYAEL
AQLDAGSWYAPQYAGEPVPTFSAVARYALANGIACNVEIKPCPGREAETGAAVARAAAALWQDALPAPLLSSFAEPALHA
ARGAAPQLPRALLVDRVPADWLERLRKYDCIALNINQRDASRELVDAVHQAGYRIAAWTVNDPARARLLLDWGMDAIFTD
ELATIRPAV
>SEQF1086_CAE42019.1 peptidyl-prolyl cis-trans isomerase D [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFEIIRTHRRWMQLILLLLIVPSFMLVGVQGYDSFINREPELATVAGQPVTRSEFDQAHRNQLEQLRQRLGSQFDPAMID
TPAMREQLLNQLIDQRLLAVVAADNGFSVSDGTLRNTIAAIPQVQDNGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVA
RVLDPISQSASVPAEVARSVEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQEQLRVPEQVQAQYLVLDEAAA
TEGVQVKDEDIASYYEQNKSRFGQPERRRVSHIMISIPPGASEEARKAAAAKAQEIAAQAAADPAGFAELARKNSQDTGS
AGQGGDLGWAPLPAPLQQAAQALAKDQVSGVVDTPTAFHILKVTDFQPGSVKPLAEVKDEVVGEIRKQLASARFADMATD
MTRLVYDQRDSLQPTADKLGLKLRTAGGITRTGLLPAEQAGAGSAAGGDDAQLLDNPRVRQVLFSPDVLREKLNSGVIEL
TPDTMLAVRVAAVEPSHIPPLEQVRASIEDRLFGERAAQAARQAGEAALKSVQADASATPEGFAPAIVVSRQDAQNLPRR
VLDAVMRQAPSPLPAYTGVELGADYVVARIEKVEAGQSTEQDLDLLKTQLSGAWGQAEDAAVLRQLRDQYKVQILPEAAE
AIKGDAQSAAG
>SEQF1086_CAE42020.1 acyl-CoA thioesterase I precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPAQAQTASAPTGSAPHAVLVVGDSLSAEYGLRRGSGWVPMLAQRVSQQSPNYRVVNASISGDTTSGGLARLPALLRQHA
PAVVVLELGSNDALRGLALDMTERNLRAMAQASRQAGASVLVVGMQIPPNYGRDYTQRFAQVFPAVAEQEKARLVPFLME
GIATNRAMFQADGIHPNENAQPALLDNVWPLLEPMLAQPAAD
>SEQF1086_CAE42022.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE42023.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQVRKLFVATLIGATAAIGSLAHAAGEDKPKQSVGEYASDATVTTKVKAAFVADKSLSALDIAVETNNGVVTLTGTVGTA
TEADQAATVARDVEGVKQVMNNIKVDPAKAAK
>SEQF1086_CAE42024.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLHYAVVFFVIAIIAAVLGFGGIAAGAAGIAKILFFVFLVLALLSILGGVFRK
>SEQF1086_CAE42025.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNNDIVAGKWKQLTGKAKAAWGELTDDELTRTEGNAERLAGLIQERYGKTKEQAQREVREFFDRNP
>SEQF1086_CAE42026.1 cyanphycin synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEVSRIRALRGPNLWSRNTAIEAIAACSDAECAINGMPDFEARLRARFPQLGVLQPEGQRDAISMAHVLQATALGLQAHA
GCPVTFGRTSPTIEPGVFQVVVEYSEEDVGRLAFELAEALIRSAQDDTPFDLPQALQRLRDLDEDTRLGPSTGSIVNAAV
ARSIPYHRLTQGSMVQFGWGSKQRRIQAAETDMTSAISESIAQDKDLTKMLLDAAGVPVPMGSSVDSAAAAWQAAQALGG
SVVVKPRDGSQGRGVAVNIETRDRIESAFEAAAEISSEAIVERYIPGHDFRLLVVGDTLVAAARRDPPQVTGDGTHTIAE
LVAQVNADPLRGDGHATSLTKIRFDDIAIATLRKQGYEADSVAAAGALVVLRNNANLSTGGAATDVTDEVHPELAARAVT
AARMIGLDICGVDVVAETVHLPLEDQHGGVVEVNAAPGLRMHLNPSFGKGRAVGEAIISHMFAERDDGRIPVVAVAGTNG
KTTTVRLTAHILDCAGHRVGMTNSDGVYVGKQRIDTGDCSGPRSARRLLLHPDVDAAVLETARGGVLREGLAFDRCNVAI
VTNIGMGDHFGLGYISTVEDLAVVKRVIVQYVQPDGMAVLNAADPMVAEMASACPGSITYFAEDRNHPVMATHRAQGHRV
VYRDGDSLVAAQGGAEVAFALADIPLTRGGAIAFQVENTMAALAAAWALGIDWDTIRHALAIFVNDAQTAPGRFNVFDFR
GATLIADYGHNPDAIQALVRAIDTMPARRRSVVISGAGDRRDEDLRQQTEILGGAFDDVILYQDQCQRGRADGEVVALLR
QGLQQAPRTRHIDEIQGEFVAIDAALERLAPGDLCLILVDQVEEALAHIASRVTGQP
>SEQF1086_CAE42027.1 cyanophycin synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRNHSSITMKKKDIEFLDVVTLRGPNIWTYRPVLEAWVDIGELEDFPSNTIPGFYERLSGWLPTLIEHRCSPGVRGGFLQ
RLREGTWPGHILEHVTLELQNLAGLPGGFGKARETSRRGVYKVVVRAWHEQVTRAALQEGRDLVMAAIEDRPFNVPAAVA
RLRALVDSLCLGPSTACIVDAADDRDIPYIRLFEGNLVQFGYGSRQRRIWTAETDRTSAIAEGISRDKDLTKELLSTCGV
PVPEGRLVQSAADAWEAAQDIGLPVVVKPYDGNHGRGVFTNLLTRDEIESAYAVAVDEGSGVIVERFITGNEHRLLVVGD
RMVAAAAGEPAWVTGDGVSTIEDLIGSQINTDPRRGRTENHPLNPVRLDSAARLEIARQGMTATSVPAAGRNVLIQRSGS
VAFDVTDRVHPSVAATVALAARVVGLDVAGVDLVTDDISRPLDQTRGAIVEVNAGPGLLMHLKPADCPPRPVGRSIVDHL
FPADDDGRIPIVGVTGTNGKTVVARLVARLVQKGDCANWAAGRRVLMNRSVDAAVIENDSGVILGQGLAYDRCLVGVVTN
IDDGDHLGDFDINETDRLVDVFRTQIDVVLPGGAAVLNARDPRVVRMAELCDGEVLYFGLDPALPTLAAHLAEGKRAVYL
RAGRIVLARGRDEEALADIAAVPLTHGGRVAFQIENVLAAVAAAWALDIPVELIRAGIETFDIDQADAPWQFTLFERNGA
CVVVDDVHNPSALRALLAAIEQFPARRRAAVYSAGADRNDDALVEQGRLLGTTFDQVVLYDDATVASKRPAGQARSLLRQ
GLEQSARATAIADEADHARAIARVLDDLREGDFALLQSDEAFSGPTIDLVRRWIQQG
>SEQF1086_CAE42029.1 hypothetical protein BP1743 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRAQPAMNDSAFQLHRNQAGRLVFTGADGRAHEGVVPVRAFPISAPASGLSLVSADGHELAWLDDVAQLPPAQRPLVEAE
LASREFMPEIRRIVSVSTFATPSSWQVETDRGNATFVLRGEEDIRRLAGHTLLITDMHGIFFLIRDALALDRHSRKLLDR
FL
>SEQF1086_CAE42030.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPSSVELSVQAGLEHFDAAQWDALAGPQPFVRHAFLRALHDTGCASPGTGWTPCFLALRRAGLLAGAVPLYAKSHSRGEY
VFDYAWADAYARNGLPYYPKLLSAVPFTPVGGARLLAHTHADRLLLARGLIQLARQFEVSSLHVLFPSDDDLLALREAGY
LIRAGVQFHWRNAGYAGFDDFLAAFSHDKRKKIRQDRKKVAAERVSFRWLRGADIDAAALDFFYQCYRHTYLAHGNPPYL
NLEFFRQLHAEMPDALVLILAEQDGQPVAAALNLQADGVLYGRYWGARRYIPGLHFETCYLQSIEYCIAHGQASFEGGAQ
GEHKMARGLLPTPTWSAHWIADTRFAAAIDDFLGHETHAIDEYRDELATHSPFRKT
>SEQF1086_CAE42031.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEAASIAVPGAGAGASLRAQALDALMTPAWADKLAAVAAIDAGAPVGAQQDLAEPAGLPGRPPAPQLVPPSQVRQRSVQS
PEGRAALLHALAHIEFNAINLALDAVWRYGGLPDAYYLDWLKVAREEAYHFDLLNRHLSGLGHAYGDFPAHNGLWEMAEK
TRADLLARLALVPRTLEARGLDASPLIRDKLAAAGDADGAAILEIILRDEIGHVAIGNHWYKALCAQRGLDPVAQYAQLA
SRYGAPRLRGPFNLEARRAAGFDEDELRALLQA
>SEQF1086_CAE42032.1 putative peptidoglycan-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVHMNKAYLRLLCATAFAAAAIPALAAPAAATPADLDAYRACLKQLRGDAIKSGVQAATYDAQTASLAPDMDVLGFLDVQ
PEFKTPIWDYMAGLVDEERIEDGRQALARHADVLARAQAEYGVDPATVVAVWGVESNFGKNLGGRPLLTSLSTLSCFGRR
QSYFRGEFFATLKIIQDEHMQPERLAGSWAGAFGQTQFMPSTYLRLAVDFDGDGRRDLVDSVPDALGSTANFLRRAGWQT
GQPWGFEVKLPAGMDLAGTGRRNKQPMSAWQARGIKRVDGGALPAGDTPAALLAPAGAQGPVFLVLRNFDALYSYNAAES
YALAIAHLSDRLRGDLPFARAWPTDDPGLSRAERRELQELLLARGFDIGKPDGVIGVRTRQALQTVQGQLGLPADGRAGQ
KTLKALRTP
>SEQF1086_CAE42033.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGLLDSLTSIAGGALGGGDERSANGGMAALLPVLVAQLNNYPGGLTALIQRFQEGGLGEVIASWVSAGPNQPVTPAQLDS
VLEPGMVDQMAQQSGQDRGDVLANLSRLLPGLVDTATPGGQAESGQSFDAGSLLASLSGLLDGKRG
>SEQF1086_CAE42034.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE42035.1 putative AsnC-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQLDAIDHRIIGILQRDADISNAVLAERVGLSASACLRRVARLKENGVIRRIVAVLDPARVERPLSAIVTLEFARHGSEY
RRTFMEQVALEPAVTQCYMVTGEVSCVLIVHMRDMDEYLAFADRLFDQDDNVQAFYTHIVMQTVKDEPVVAVPAAPR
>SEQF1086_CAE42036.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPYLSGLMRRSGRLFLTLVKVMLPVMIAVQAAQAWGWIDILGQAFAPAMGLLNLPAEAGMVWMTGAFVGIYGAIAALISL
APALELTGGQFSALCSMLLFAHALPVEQAIVRRAGASFWATAALRVGAALGYGAAVSWFCHATGWLDEPVSLQWLQSTAL
AGEQAGGIWAWVRGTAVSLSFTYLIILALLVALDVMERTGITRAITVALTPVLRVSGLDPRVTPVTILGVLLGLSYGGAL
IIEEAEKQQLEARPRFLALAWLSLSHSLIEDTVLLMALGANGWIVLVGRLLVTLVVVAILARMLGGGGAARRPLGAPAG
>SEQF1086_CAE42037.1 DNA/pantothenate metabolism flavoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLDLARKRIVLGLTGGIACYKIAELVRRMTEQGAVVDVVMTEAATHFITPVTMQALSGRPVFVDAWDARVDNNMAHIDLT
RGADAVLIAPASADFMAKLAHGLADDLLSTLCLARACPLLVAPAMNREMWANPATQRNAAQLRADGITVLGPAAGEQACG
ETGTGRMLEAHELLADLIASFQPKVLADRHMLLTAGPTSEPVDPVRVLSNRSSGKTGYALARAAHEAGARVTLITGATAL
AIPRGVTALHVTTARQMHDAVMANANDADIFVAVAAVADWRVKNVSEQKLKKTTEGGGAPALEFEPNPDILAEVAKLASG
PWCVGFAAETEKLAEHAEAKRLRKGIPLLVGNLAHKVMDADTTELVLFDEHGVHPLPAAAKLDAARRLIAEIAARLPAPA
RP
>SEQF1086_CAE42038.1 lipoprotein signal peptidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQARAAAPRLAPWLAAAALIIVLDQATKLYFDGAFQYGERLNVLPFFDFTLLYNRGAVFSFLASEEGWQRWFFTALGVG
ASIVIVWLLRRTAGQPRFSLALTLIMGGALGNVIDRVAYGHVVDFLLFYWRDWHYPAFNLADVAITCGAVLLVVDELLRA
RKRPTAQD
>SEQF1086_CAE42039.1 isoleucyl-tRNA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDYKKSLNLPDTPFPMRGDLAKREPGWVAEWEETQVYQAIRAASRGRPRFVLHDGPPYANGDIHIGHAVNKILKDIIVKS
RNMAGYDAHYVPGWDCHGMPIEIQIEKKYGKHLPVTEVQSKARAYALEQIDRQRKDFKRLGVLGDWHNPYLTMNFSNEAD
EIRVLGRILEKGYVFRGLKPVNWCFDCGSALAEAEVEYADRVDPAIDVAFPFTDRGALARAFGLDEVDAGAIVIWTTTPW
TIPSNQALNVHPEIDYALVRVTPAPVHGPLLLLAQERVEPSLKAWGLEGEIIATAKGEALEGLRFRHPLAAAAQGYDRTS
PIYLGDYVTLDTGTGVVHSAPAYGIEDFVSCKAHGLADSDILGPVMGDGKFVDSLPLFGGLSIWDANPRIVEALKLADSL
MLVQKLSHSYMHCWRHKTPVIYRATSQWFAGMDVKPRDGGPSLRESALAGIDATAFYPAWGRARLHAMIANRPDWTLSRQ
RQWGVPMAFFVHKETGELHPRTVELLEQIAQRVEKGGIEAWQSLDPRELLGDEAELYEKNRDTLDVWFDSGSTHATVLGG
KDGVLGGSHGAELAWPADLYLEGSDQHRGWFHSSLLTGCMLYGHPPYKGLLTHGFVVDGQGRKMSKSVGNVIAPQKVSDS
LGAEILRLWVASTDYSGELSISDEILKRVVESYRRIRNTLRFLLANVADFDAVGQAVPYGELFEIDRYALAMTAQMQAEV
QGHYERYDFHPAVSRLQTFCSEDLGAFYLDILKDRLYTTAAGSAARRSAQTALLDITQTLLKLMAPILSFTAEEAWKILA
GSALAKQADAPRVTIFTEVYHALPPFADGEALTAKWTRLRAIRAEVQRKLEEVRSAGAIGSSLQAEVDLYANAADHDILA
SLGDDLRFVLIVSRATVHADADDLRIEIAASGHKKCERCWHWRPDVGQDADHPEICGRCVSNLFGAGEPRTRA
>SEQF1086_CAE42040.1 riboflavin biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPSLRIYRYPPPPSQRTPCALTIGNFDGVHLGHQAILARVRQEARARGLVPAVMTFEPHPREYFATLNRRPELAPTRIS
GLRDKLQALAAAGIEQVVVERFDARLAEMSANAFIEDLLVAGLQTRWLLVGEDFRYGHKRSGDIDLLREAGLTHGFEVCT
LADITDRQGHRISSSEVRTALAVGDLDRAAQLLGQPFHISGHVIHGQKLGRELGFPTMNLRVAPRCATRSGIYVVRVLGL
QDRPLPAVASLGVRPTVEDRGRVLLEAHLLDESLDAYGKLVRVEFLHKLRDEEKFADLPSLTAAIAQDAQNARAYFAVHG
L
>SEQF1086_CAE42042.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLGEVLQWTYPADAVLSHWLRAYPGMGGRDRAELAQAVYDVLRHLRRYRQFAESGVGPATRRLAILGLAATMNPDVLAEG
LGADQAAWLQRIRHIDVATLPRAVRASVPDWLDERLAQLDDSEALLDALNRPANLDIRVNPLKAERDPMLTVLRAGPAGR
FDPQPMPYSPWGIRLAGHPSVNRWPQFEDGSIEVQDEGSQLLALLMGPRRGEMIIDFCAGAGGKTLLLGALMRSTGRLYA
FDVSAARLARAKPRFARSGLSNVVPVAIDSENDTRVKRLAGKAQRVLVDAPCSGIGTLRRNPDLKWRQHPQSIAEMCELQ
HRILKSAARCVAPGGRLVYATCSLLAEENAEQAERFLAEHPDFERLDAAQLLANRCANLTLSGPYVQLRPDVHGTDGFFA
AVFERRKPSAAATQEPADVAAETGPGEPEDAAG
>SEQF1086_CAE42043.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE42044.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLRLLPALLALAVPAAWAAGPTVQVGDNVTLASYYQIRGADCASLRPPLVRIVQPPRLGTATVVQSQGNSGPGGRCAHTA
VPVTQIVYRGTQPGQDTVVWEVTHQPRQPASRRDSAAIVVVPRN
>SEQF1086_CAE42045.1 probable fatty acid desaturase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDSILSFISGGLTQATWWQIVLFTLVVTHITIVSVTVFLHRSQAHRGLDLHPAVMHFFRFWLWMTTGMVTKEWVAIHRKH
HAKCEKEGDPHSPMLFGIWKVLFRGAELYREESANKETMAKFGHGTPDDWLERNIYSKHSLAGVLTMLAIDLALFGAVGL
TVWAVQMAWIPFWAAGVVNGIGHYWGYRNYNSPDTSTNVFPWGIIIGGEELHNNHHAHGTSAKFSAKWYELDIGWGYISI
LKFFGLAKVKKVAPKLKLESGSKGIDLSTLQGVITHRYEVMARYGDLVKRAAREELSKLKSSRQQDAANCRWTTLRRVRR
WLHRNEEVLQPEQRAEVDQAIAQNQSLSTLVQMRRELGRLWESSSASSEQLLHDLQAWCQRAQQSGIAGLEQFALHLRRY
AA
>SEQF1086_CAE42046.1 DNA helicase II [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMLEKLNPEQRAAVTLEPQHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFALLAVTFTNKAAREMLTRMSTLLPIDTRG
LWIGTFHGLCNRMLRAHHRDAGLPQAFQILDTTDQLAAIKRLLKAGNIDDEKYPPRDVQRFINGAKEEGLRPGDVEAYDP
HRRKLIEIYQLYEAQCQREGVVDFAELLLRAYELLSRNAPVREHYQRRFRHILVDEFQDTNTLQYKWLRLLAGTGAAIFA
VGDDDQSIYAFRGANVGNMADFERDYAHGRVIRLEQNYRSYGHILDSANALIGHNTGRLGKNLWTEQGEGEPVRVIEQPS
DGMEAQWLVDEIRALINDGRMRSEIAVLYRSNAQSRVLEHALFSVGIPYKVYGGLRFFERQEIKHALAYLRLIANPNDDT
SWMRVVNFPTRGIGARTLEQLSDAARAHDTSLFGAVARVGGKGGSNLAQFAQLIGQMAHDTRELPLPELVDHVIEASGLK
AHYQTEREGAERLENLNELITAATVFAAEENFEGLPAGVVPDHDVSGALMPGVVDAPQPDTLGGLTPLAAFLSHAALEAG
DNQAQVGQDAVQLMTVHAAKGLEFDAVFITGLEEGLFPHENSIMEPAGLEEERRLMYVAITRARERLYLSLAQSRMLHGQ
TRYAMRSRFLEEIPEQHLKWLSPRAGLHQGGGFGGAAPAWSSRGDAFGRKPTGTAAPRQPRGMASGVTVGEQQFRVGQGV
RHARFGDGTIIGLSGSGQDAQAQIQFRDVGAKTLALGIAKLDIITA
>SEQF1086_CAE42047.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKPILKKRQRTTLAALLLCTAAATHAATQSPALAFDLPAQPLDAALRAYARQAGVALSFDAREAARKQAPALRATMTAQ
AALQHLLRGSGLTWRAAGANRYAVVRAADAAAAWPLEPVRVYGDATRERVYTEQEIAATPASNRDLSALIATHPAIRESG
TAEDGANRGTLNVEDISIHGASPYQNLFLIDGVGATSRVDPANKSRNFTDVPSNPQAYFLDTALLGEVRVFDNSIPVEYG
AFNGGVVDARLRRPSGENHVKLDYRWNGSNLTRQKIAPGNAEDWLQGTPDFTPSWRKRFHTASADIALGERAGLVLGLSR
RISRIERWRLGAVGHLDRPERDDSLDRVDNLLGKFSLRLDADTITDLSLKYADRREHLVSNFFRDTDWRNRHGAQGAVWN
IEHTLRGGKLSAQLGWDRFDSHRNSAHTEFVQHDFVDGRPGFASGGYGKDEKGQRNLTLATRLDLAPIQTGPVSHASYVG
LQVEHTGARFKRYNQSYSYRAVHREDGTEKHFSKVRHLPGSVTLDYTRLGLYASDELTWRRWTLNAGLRYDRDNFLHHRT
LAPRARLDWDVLGSDDTVLSAGWSRYYGGHVLKIAMQEEFSRLSEQVLDHHGDPVPNGRKITRVNYDGLRSPYDDEWAFS
LAQRAYGIRGVLTFVHRNGRDQVTRRGDSRVGYRYTNEGNSRTDGWNLTLANEEAWRLGETLWHAQASWGYQRNKRNLNL
AEGYESSPVERADYVYYNGKRIPAANLPPSNFNLPHKVSLDLTGHWPRHGLTWSNTVNWHGRRKEIAFVDTGPAPEYLDM
YESLSAPSYWSWDTRLIWQPPFARQVTLALDVLNVLNRIAALTTNPRDSLIDARRYRTGREIWLQVGYRY
>SEQF1086_CAE42048.1 probable ABC transporter ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIRASGLTLRRGTKVLLDGADFVVHPGERVGIVGKNGAGKSSLFALLTGALDPDAGNLDLPAGWRIASVQQEIAADAQAA
REFVIDGDTHLRALQAQRAALTDDQGTQIAETEAALIEAGAWSAASRAEQLLAGLGFKPSEWMQPVRSFSGGWRMRLVLA
RALMAPSELLLLDEPTNHLDLDAMLWLEKWLTAYPGTVLLISHDTEFLDAVARAILHFDQAKLQRYRGGYQDFLLQRAER
LRQANIAYERQTREAARLQGFIDRFKAKASKAKQAQSRVKALARMEALAPIHAESGIDIRIPSPDHMPDPLLAMEHMDAG
YGGAEPILRDVTLMVRAGSRIGVLGANGAGKSTLIKTLADELAPHAGTRRASRGLAIGYFHQHQLDMLDLDSTPLAHLAR
LAPEVREQELRNYLGGFGFSGDTVLSKVGPMSGGEKARLALSLIVWQKPNLLLLDEPSNHLDVETREALATALAEFSGSM
LLVSHDRHLLRTTVDSFWIVADGGVREFDGDLEDYRDWLAARNAGERAAAREAAAGEPGVAVDRKAQRRLEAEQRQRLAT
LRKPLAAKLAKVEADMERARARLQELDAVIADADLYSDARRTERQQVMTEHGESGKRLNDLEEQWLEIQQALEEIEQDNA
A
>SEQF1086_CAE42049.1 putative adenine-specific methylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQNNNRQELQTLRDLIRYAVSRLNAARVALGHGSDNAWDEAVYLVLHGLHLPPDTLDPFLDARVLPSERSRVLDLIDRRV
TERLPAAYLTGEAWLRGHRFHVDRRVIVPRSPIAELLDEGLAPWVRDPLQVERALDMCTGSGCLAILAALAFPVAQVDAV
DVSSDALEVAARNVAEYGLQDRLTLRQGNLFEALPAAAYDVIVCNPPYVNQASMGALPQEYRHEPALALAGGADGMDLVR
RILAAAPGYLSADGVLVLEIGHERDHFEAAFPDLQPVWLDTAESSDQILLLTREQLNT
>SEQF1086_CAE42050.1 succinyl-diaminopimelate desuccinylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTASAVLDLVKDLIARPSVTPDDVDCQMLLAQRLERIGFQCETIARGGVTNLWARRGAGAPLTVFAGHTDVVPPGPRDKW
DSDPFVPTERDGFLYGRGAADMKSSIAAFVVAAEEFVAVHPEHPGSIALLITSDEEGPAVDGTVIVCDELRQRGEQLDYC
IVGEPTSTEALGDVCKNGRRGSLSGRLLVKGVQGHVAYPHLARNPVHQLAPALTELVAIEWDQGNEYFPPTTFQVSNLHA
GTGATNVVPGEAVALFNFRFSTASTPGQLKARVHEVLDRHGLEYQLDWELGGEPFLTPRGSLTDALVSAIQAETGLQAEL
STTGGTSDGRFIARICPQVIEFGPCNATIHKVNERIELSSLAPLKNIYRRTLENLLLAD
>SEQF1086_CAE42051.1 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLDLQTTIEQAWENRANLSPVDASAEVRDAVEHTIDGLDLGRLRVAEKIDDQWIVHQWIKKAVLLSFRLHDNAVMGQGP
LQFYDKVPTKFAGYGEAAFKAGGYRVVPPAVARRGAFIARNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLS
GGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVVVEENSVLAMGVFLSQSTKIYDRATGKVSYGRVPSGSVVVPGSLP
SEDGSHSLACAVIVKRVDAQTRAKTSINDLLRA
>SEQF1086_CAE42053.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTLATALMLSLGPLSAGAQAAPNAEPNNLPYQGVYGQTDANAPTRAQVQAELAQAKANGQYTFGELEYPAAQTGSTAAP
SRDQVKAELAQAKASGQYTFGELDYPPRN
>SEQF1086_CAE42054.1 autotransporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPTSILARLPRYLGACALAALAALAVAPLAPAQAQTPLPAGLGAAEVRQYLSGLPSDALRQQASWLAPALLRPYLSGLT
DAQLRQYVQALTPGQITQGLAALTPAQRARLQREFERQARRQVQQAVRAEVAARSARAVAMGQSASMLLLDAEMGTLAQR
QGDLRRGHDEGAFWARGSANRFKVDTPDTPAFDLRVEYLTLGADHGWRLDTGRLYLGAYAGVSRARMDDNDIMHGRIESR
FLGTYLTYVDNGGFYVDAVSKLGRIDESVSFDLPLGLGDYDDDISHTTYTGSAEAGYHFKLPQRWFVEPQAQVIYSRSSQ
TSVQGRAGVRAGRDFTLAGGATLRPYVSASYLHEFSHDDSVDFGGKSYDAELPGSRWQLGAGAALDVGAHRAYADLRYGH
GANISQDLSLNIGYAYRF
>SEQF1086_CAE42055.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVYEDFFWFMAALVALALVGGALFGRLGRLAHSVIAMLGLAIAVGVAVLLGARGEDVGPYAPLLAIAAFMFCLMIGGAAT
LVTRRVRRRHLTH
>SEQF1086_CAE42056.1 hypothetical protein BP1769 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDISSHLLAELANGVCLETRVDGQTIGTYVVLGPADLDAIADIVPRQRVEEGADIHAAAVDSVDGAQMEIDQVIENMNPG
DVAVFFCADGDCYGAALDLLGLPVDE
>SEQF1086_CAE42057.1 cold shock-like protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
METGVVKWFNAEKGYGFITPEAGGKDLFAHFSEIQANGFKSLEENQRVSFVTAMGPKGPQATKIQIL
>SEQF1086_CAE42058.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDSMAGPAALPDAATVLAFWREAGPARWYAKDEQFDRTFTMRFEAAHMAAARGELMAWSASAEGMLALLILLDQFPRNA
YRGTGHMFATDGLARQICEQAIAAGLDRQGPEDLRQFYYMPLEHAEDLAAQEQCVSLMAPLHAETLRWAEIHRDIIARFG
RFPHRNTVLGRATTAEEQQFLDQGGFSG
>SEQF1086_CAE42059.1 cold shock-like protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATGIVKWFNAEKGYGFIMPDDGSKDLFAHYSEICSEGYKSLQENQRVSFEVGQGPKGPRGQAPRT
>SEQF1086_CAE42060.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHPIQEPRLGPLPALIFSSRWLQLPLYLGLIVAQGVYVLLFLKELWHLVTHTLSFGEQEIMLIVLGLIDVVMISNLLVMV
IVGGYETFVSRLRLEDHPDQPEWLSHVNASVLKVKLAMAIIGISSIHLLRTFIEASNLGSPNSRFTETGVMWQTIIHVVF
ILSAIGIAYVDRLTSQSVGHGAHPSH
>SEQF1086_CAE42061.1 trigger factor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQPVVETLSGLERRVDLAVSVAEVEKEVQAQLKRVGRTAKVAGFRPGKAPLAMLERSHGPGIRYDVINSLVGRAFEQAVD
GAKLRVAGSPTLTPKTEGVAEDTLAFTATFEVYPEVTVPDLSALAVTRYDTPVTDAEVNQTLDVLRKQRAKFEIREGRAS
QDGDRVVLDFAGTIDGVPFEGGKAEDFPFVLGQGRMLPEFEEAALGLKAGESKVFPLKFPDDYQGKEVAGKTAEFTITVK
EVAEGVLPEVDAEFAKSLGQAEGDVEKLKADIRTNIEREVKARLQGRTKGSVMDALVEAGKFDVPKALVDSDVEGRIAAA
REELKQRGVPNADSVPMPAEVFSTESERRVRLGLLVSELVKQAQLQAKPEQVRARIEEFAQNYEQPAQVVSYYLADRQRR
AEIEAIVLEDNVVAHVLENAKVADEKVPFDQLMGMA
>SEQF1086_CAE42062.1 ATP-dependent Clp protease proteolytic subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQRFTDFYAAMHGGSSVTPTGLGYIPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDNTANLVVAQLLFLESENPDKD
ISFYINSPGGSVYAGMAIYDTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQIQ
AREILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDAVSYGLVDKVLTSRAQT
>SEQF1086_CAE42063.1 ATP-dependent Clp protease ATP-binding subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPEKKGSADAKVLHCSFCNKSQHEVRKLIAGPSVFICDECIDLCNDIIREEAQATARAAIRSELPTPAEIKTFLDQYVIG
QTSPKRMLAVAVYNHYKRIRHGEIKGDEVELSKSNIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVE
NIIQKLLQNCNYDVEKAQRAIIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVD
TTNILFIVGGAFDGLEKVIRDRTEKSGIGFSAAVRAKSERGVGELFSEAEPEDLIKFGLIPELVGRLPVVATLDELDEAV
LVQILTEPKNALVKQFQKLFAMEGAELDVRPDALKAISRKALKRKTGARGLRSILEGALLDTMYDLPSQGNVSRVVLEAN
AVEGVGKPLLIYADESEAASGEKAGRGEVRDAAA
>SEQF1086_CAE42064.1 ATP-dependent protease La [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSASQTLSSDPIDLPLLPLRDVVVFPHMVIPLFVGRPRSIRALEVAMEAGKSIMLVAQKSAGKDDPTPEDVYEIGCVASI
LQMLKLPDGTVKVLVEGTQRARIDSIEDVDSHFTCQVTPIEPDTLQGSETEALRRAIVAQFEQYVKLNKKIPPEILTSLA
GIDDAGRLADTIAAHLPLKLEQKQKMLEVVVTAERLEGLLTQLETEIDILQVEKRIRGRVKKQMEKSQRDYYLNEQVKAI
QKELGEGEEGADIEELEKKIIAAHMPKEARKKADGELKKLKLMSPMSAEATVVRNYIDTLINLPWKRKSKINNSIGNAER
VLDDDHYGLEKVKERILEYLAVQQRVDKVKAPILCLVGPPGVGKTSLGQSIAKATNRKFVRMALGGVRDEAEIRGHRRTY
IGSMPGKILQNMSKVGVRNPLFLLDEIDKLGMDFCGDPSSALLEVLDPEQNHTFQDHYIEVDFDLSDVMFVATSNTLNIP
PALLDRMEVIRLSGYTEEEKIHIARDHLLPKLMKNNGVKDNELTVDDSALRDIVRYYTREAGVRALEREVGKICRKVVKQ
LLIKSDEAKAAGNKTAEAQTVLVNGDNLNDFLGVRRYTFGMAEKENQIGQVTGLAWTEVGGDLLTIEVADMPGKGNIQRT
GSLGDVMKESVEAARTVVRSRARRLGFADSVFEKHDMHVHVPEGATPKDGPSAGIAITTAMVSALSRIPVRADVAMTGEI
TLRGEVLPIGGLKEKLLAAHRGGIKTVLIPEENVKDLAEIPDNVKNFLEIVPVRWIDKVLELALERMPEPLSEEEAVKEA
IVAKPAEAGAADPVMKH
>SEQF1086_CAE42065.1 probable LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLDLRRVRQFVTLGETLNFRRAADRLHMTQPPLTVAIQKLEAELGTRLFERGGSGGVSLTPGGHAALAEARRLLFHNAQL
LAAARAASSGTGGALKVGFVGSTTNGVLQRIVRLFRVEYPGVELVLKEGTSVRIAERVDSGDLDVGLVRTPLLTPSRSHL
APLLAEDFVAALPLGNPLAQKADIRMEELATESFVFYSREDAAGLHATAMLACQRAGFLPRVTQEATQVQTVLSLVESGL
GVALVPAVMQYNPSPRVAYRAIADVSPAAEIGLALLLPEPSSAAAQRFREVALHCFGDD
>SEQF1086_CAE42066.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDTALGHIKVLDLTRILAGPWATQTLADMGAEVVKVERPRVGDDTRAWGPPFLKDSEGNETADSSYFLAANRGKKSITVD
LAHPDGQALIRDLAATADVVVENYKVGTLARYGLDYESLKAINPRLVYCSITGFGQDGPYASLPDYDFVFQGMGGLMSIT
GQPEGTPGDEPMKVGIAISDLLTGMYATTAILAALERRHVSGTGQHVDMSLLDCVVSISSYQAINHFLSGKIPRRMGNAH
SNMVPYQVFRCKEGDVIVAVGNDGQYRALCKLIERDDLATDERYATPGQRNRNRDTLIPEIAQAMLARTMQEWVALMEAA
NVPCGPIYNMQQMFEDPHVQHRGMRLSLPHSAGVQAPAVASPIRLSDTPIQYGRSAPLLGEHTDSVLAQRLGLAPARIAE
LRARGAI
>SEQF1086_CAE42067.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLRHTFIRAALAAALAVCAAGAHAQAKPSSIRLVVPYPAGGAADQIARLVANDAGAILGTPIVIENKGGAGGMIAAESVL
QAAPDGATFFVGSNAPIVINQAIYEKMSYDPAKDFVPVAGMGKAPLLLVTRKDLGTADVKALAELGKREAGKLTMGSASS
GNITHLAGEYAASQMGFKVTHVPFKGSAPAITSLMGGNIDIMFDALPSCMAQAESGRIVPLAILDDQRFPQLRDVPTAKE
LGYSGLEAAAWFGVMACAGTPDSSIGAMNKAINQALQKQELIDKLRRIGAQPMPGSQQDFARFIDAERKQWVPLAKSLGV
RAD
>SEQF1086_CAE42068.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGQPIVVDQSAIDTFGDVVHDRQWIHVDPVRAAAESPFGTTIAHGLLTLSLITGWYHQLFEFPGRKLALNYGFDKVRFPA
PVPSGSALVGSFRLARVDELGPDEARCLWEVDVRVAGAERPAMVAEWLMQLRY
>SEQF1086_CAE42069.1 probable enoyl-CoA hydratase/isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSVLEISRVGACAVLTLNRPAARNALDMDLRNALAKALPEIRDDATVRAVVLTGAGGHFCAGGDIRAIAAGQGNADVFEG
RNRILSMQRWFDGLVDLEKPVIAAVDGVAFGAGLSLALAADFVLASPRATFCAVFARLGYVPDLGGMYLLPRAVGLARAK
ALAFSARVVGAPEALEMGIAHQLVDDRPVLDAALELAGRFEQAPAGALGIVKSVMNHAFESDRRTVYMQEALAQALCRES
AFHQEAARRFLDKQAPLYQWPQEQQ
>SEQF1086_CAE42070.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTEHPQAASALLPQQEYFAHLADGRFMIQRSRSSGEYVFYPRVAAPRTGAQDLEWVAASGRGTVYATTVMRVRPPAAPYN
VCLVELEEGPRMMSRVEGIGPEDVQVGMAVRARIIRDDAGEPLVVFEPAGPSDAGIGQGRAAQ
>SEQF1086_CAE42071.1 putative thiolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIQERFPRGKTAIVACATYGIGESPGLSSLDLAVRASVQALDSVGLTPADVDGLFIGLPDDFVSGLSFTEYLGISPRLTD
NNRTGGSSFLTHAIHAALALEAGLCDVALIAYGSNQRSGAGKLVSSMRPSPYEGAYKLARPVGAYALAASRYAAQYGLQK
EQLGAVALAARQWAQKNPEAYMRAPLTMDECLASRLVCDPFSVRDCCLVTDGAAAVVMVRADRARDLAARPAYLLGGAAA
AWHKDITNMPDLTVTAASLSGPRAMAQAGVTPADIDVLELYDAFTLNTILFLEDLGFCAKGEGGAFVEDGRIAPGGALPV
NTNGGGLSCVHPGMYGLFTMVEAAQQLAGAAGERQVAQARLALAHGNGGELSSQATLILGTEETI
>SEQF1086_CAE42072.1 3-oxoacyl-[acyl-carrier protein] reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQDKLLTLENRQVIVTGAGQGIGRALASAIAGLGGRVVAVDLNADALAALREALGHERCVTVAGNVADPSLAQQAVDAGV
TAFGGVNGLVNNAGVTRTAMIDKMSISDWQQVIDVHLSGSFYFLQALGRHLLGRAKAGGDGAGAIVNISSDAGRRGTIGQ
INYGAAKAGVLGLTMCAAREWARYGIRTNTVGFGVVETPMTETIRGEKFRDTYLSQIPLGRWGEADEVVRPVCFLLSDAD
SYVTGQHLSVNGGYTIGL
>SEQF1086_CAE42075.1 3-oxoadipate CoA-transferase subunit A [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLNKTCESADEAVSVVESGATILISGFGDIGLPFELLHALARTSVKDLTIVSNNAGTGELGLSRLFRNRQVSRLIASFPS
QPDSHHYFAAYQEGLVDLELVPQGTLAERIRAAGAGLAGFFTPTGYGTELAQGKECRMFKGKGYVFEEALPGDFAFIKAH
VADAYGNFRYRRASRTFNPIMAMAARTTIAEAKQMVPVGSIDPDDVHTPGVFVDRIVEVRDE
>SEQF1086_CAE42076.1 3-oxoadipate CoA-transferase subunit B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKGWSNDEIAARIAVDLPEHAIVNLGIGLPILVANHIPEGKTIFFHSENGIIGLGPVPAPGQEDPDIVNAAKKHATLIA
GASIVHHADSFSLIRGGRLDYSVLGGLQVSSGGDIANWKVPGQKGGGGVGGAMDLAVGARNVLVMMRHQDKTGASKLVKS
CTFPLTAVSAVTRVYTELGIFECAGDAFIVRESAPGIGKDELLRKTEAALTFP
>SEQF1086_CAE42079.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE42080.1 LexA repressor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATKLTERQQEILDLIRQTVARTGFPPTRAEIAQALGFRSPNAAEDHLKALARKGAIELTAGASRGIRLKVPDSATPSAQ
LTHPLLAQLVLPLVGRVAAGSPILASEHVEREVGVDPGLFAQTPDYLLKVRGMSMRDAGILEGDLLAVKRAAEARNGQIV
VARLGDEVTVKRLQRQNGRIELLPENPDFAPIVVANTDEFALEGIAVGLIRTQPLH
>SEQF1086_CAE42081.1 aromatic-amino-acid aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTLFASVELAPRDPILGLNEQYNADTRPGKVNLGVGVYYDDEGRIPLLQAVRKAEVARIEAAAARGYLPIEGIAGYNKG
AQALLLGADSPLAAEGRVLTAQALGGTGALKIGADFLRQLLPQSKVLISDPSWENHRALFERAGFPVETYAYYDAATHGL
NFEAMLAALQAAPEQTIVVLHACCHNPTGVDPTPQQWEQIAAVVKARNLVPFLDIAYQGFGEGLEQDAAVVRMFAALDLT
MFISSSFSKSFSLYGERVGALTVVAGSKDEAARVLSQLKRVIRTNYSNPPTHGGTVVSTVLNTPELFALWENELAGMRDR
IRLMRKELVEKIKTQGVAQDFSFVLAQRGMFSYSGLTAAQVDRLREEHGIYAVSSGRICVAALNSRNIDAVAAGIAAVLK
>SEQF1086_CAE42082.1 excinuclease ABC subunit B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAPGFVEFPDSPFHLYQPYPPAGDQPGAIDALTEGVSDGLMFQTLLGVTGSGKTYTMANMIARLGRPALVLAPNKTLAA
QLYAEMREFFPRNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQMRLSATKSLLERRDTVIVGTVSCIYGIGNP
GDYHAMVLILRTGDRISRREVLARLVAMQYTRNDADFTRGVFRVRCETIDIFPAESPELALRLTLFDDEIESLELFDPLT
GRVRQKLPRFTVYPGSHYVTPRETVLRAIETIKEELRERLAQLIADGKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSR
HLSGAAPGEPPPTLIDYLPADALMFIDESHVTIGQLGGMYRGDRSRKETLVQYGFRLPSALDNRPLRLEEFEARMRQCVF
VSATPAAYEQEHADNVVEQVVRPTGLVDPIVEVRPAHTQVDDLLGEIHKRAALQERVLVTTLTKRMAEDLTDFLSEHGVR
VRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGRAIL
YADRITDSMRRAIDETERRRAKQIQHNTDHGITARGVSKAVRELIDGVVAPAGHDALESAVPAEVLTDEKAMAREIRRLE
KLMMDHARNLEFEQAAAARDALNALKSRLLLDGVGWSG
>SEQF1086_CAE42083.1 low molecular weight protein-tyrosine-phosphatase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMTKVLFVCMGNICRSPSAEGVFRYLVNDAGMGDVVRVDSAGTHAFHIGEAPDARAQAAARKRGYDLTHCAARQVTADDF
REFDLILAMDWDNLAALQQQCPKAYQHKLMLLMRFANEFEEATVPDPYYGGPEGFGKVLDYLEDACQGVLELVRKRATQY
QAA
>SEQF1086_CAE42084.1 putative DNA-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRGPGGGYSLARLARNVTVADII
FAVDEPLDATSCGGKRDCTSGNDGKPGKCMTHELWTTLNRKMVDYLDSVSLQDLVDQQRVRQLQEAANQAQGCSAVRVNR
STPVAANATA
>SEQF1086_CAE42085.1 cysteine desulfurase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNRPIYLDYSATTPVDPSVVEKMIPWLYESFGNPASRSHAFGWEAEDAVEKAREEVAKLVNADPREIVWTSGATESDNL
AIKGAANFYAERGKHIITVKTEHKAVLDTCRELERQGFEVTYLDVQDDGLLSLDAFKAALRPDTILVSVMMVNNEIGVIQ
DIAALGEICREKGIIFHVDAAQATGKVEIDLQKLKVDLMSFSAHKTYGPKGIGALYVRRKPRVRIEAQMHGGGHERGFRS
GTLATHQIVGMGEAFRLAREEMGTENERVRMLRDRLLAGLTQIEEVYVNGSMEHRVPHNLNISFNYVEGESLIMAIKELA
VSSGSACTSASLEPSYVLRALGRNDELAHSSIRFTLGRFTTEQEIDFTIELIKSRVGKLRDMSPLWEMAQEGIDLNSVQW
AAH
>SEQF1086_CAE42086.1 [Fe-S] cluster formation/repair protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAYSSKVLDHYENPRNVGSFDKGDDSVGTGMVGAPACGDVMKLQIKVNEAGVIEDARFKTYGCGSAIASSSLVTEWVKGK
TLDEAMNIRNTQIAEELALPPVKIHCSILAEDAIKAAVQDYKTKHGAETPEAVAAN
>SEQF1086_CAE42087.1 [Fe-S] cluster formation/repair protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAVTLTQSAANHVGRYLQKRGKGIGLRLGVRTTGCSGMAYKLEYVDEQAADDVVFDSFGVKVFIDPKSLAYLDGTELDYA
REGLNEGFRFSNPNEKATCGCGESFTV
>SEQF1086_CAE42088.1 chaperone protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAADDHFSLFGLPTRFALDPVQLEQAWRAVAARVHPDRYATASAAERRVAMQWAARANEAYRQLRDPMLRARYLCEQAGV
DLQTESNTAMDPAFLMQQMEWREMLDDARRDPAAFAALRAELEQARLRMQQTLSELIDERGDYQQAGTKVREWMFVEKLA
QELSAAQPMQ
>SEQF1086_CAE42089.1 chaperone protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALLQISEPGDSPAPHQRKLAVGIDLGTTNSLVAAVRSSVPEVLADAQGQVLLPSAVRYLDGGAVRIGREALLEQARDPL
NTIVSVKRFMGRSAADAAASGAPYEFVDAPGMVRLRTVQGDLSPVEVSAQILAVLRQRAEDVLGDDLVGAVITVPAYFDD
AQRQATRDAARLAGLNVLRLLNEPTAAAIAYGLDQAAEGIYAVYDLGGGTFDISILRLTQGVFEVIATGGDTALGGDDFD
SAIVAHACAGEDVAALPVADRRALLVAARAAREALTDQAQAPFEVTLRDGRAIQATLTRAQFEQLAEPLVGRTLDSARRA
LRDAGLAVGDVRGVVMVGGATRMPVVRQQVGALFGTEPLTNLDPDQVVALGAALQANLLAGNRALGEDWLLLDVIPLSLG
LETMGGLVERIIPRNSTIPVARAQEFTTFKDGQTAMSVHVVQGERDLVSDCRSLARFELRGIPPMVAGAARIRVTFQVDA
DGLLSVTAREQSTGVEAAVAVKPSYGLSDDEIARMLADSVTQADSDARARMLREQQVEARQLVESVGAALAADGDLLDPA
ERATVDQRLQAAAQAQSLDDVEAVRAAVQALSDATEEFAARRMDRSIRSALAGRKLDELA
>SEQF1086_CAE42090.1 ferredoxin, 2Fe-2S [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPKLTVLPHPDVCPEGAVIEDAPKGVSICRVMLDNHIEIEHACELSCACTTCHVVVRQGFNSLEDATDDEEDLLDKAWGL
TSTSRLSCQALIGEEDLTVEIPKYTINHAKEQH
>SEQF1086_CAE42091.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKWTDIYEIAAALADTHPDADPQTVRFTQLREWVLGLPGFADDPAHCGEKILEAIQMAWIEEMD
>SEQF1086_CAE42092.1 hypothetical protein BP1806 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTASLRFGLAANRLHHETPDAALFTWLRACSATIREMGIQLHTVGRTHDAIVREGMLQGYSGLVRYPYGREGGLMKLVA
RVTEGRDGDAPFDGAIYLIDPVDPSSIFPEALALKRQCITHGRPFISTLAGAIEWIEVERVLAGLAPDATAARLFDFTGQ
TLALISHDALKEDMVAFAAEHFDLLSQFARRVATGTTGGLLNDLAWSRGWPKDRPWVHRYLSGPLGGDAQIAELVLEHQC
QRVIFFEDPHVARQHEADIQLLERAVRVVTASATCATSPSVARRWAQAVQRRQAGRA
>SEQF1086_CAE42093.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE42094.1 probable enoyl-CoA hydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAADQPPRYGTLTLQTDGALAILTLDRPAALNAIDIAMARDLQAAARWLQDRAALRVVLLRGAGKAFCAGGDIALFQGP
PEEIRASLRALFTPLNDCVARIAAMDQLWLADVHGVAAGAGLSLALACDLAIAADDARLVTAYLKLGATPDAGMTHALAH
LLGRRRALALLLRAEPIDAAQALQWGLVDRVAPAAERADQALAYARELAAHAPHDVAAAKRLLRQAPATSLEQQLEDEAA
AFLAAAGRADFAEGVQAFLAKRPPRFTGA
>SEQF1086_CAE42095.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE42096.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVSEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
>SEQF1086_CAE42098.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGGPYIGIVADDLTGSGDTAVQFVRAGWATQLSVGGAEQALADPAVRQAEVLAVTTHSRPLAAADAAAVVRGEVERLRAA
GVQRLYKKVDSTLRGAFKAEIDAARLAWGEGAIAVVCPAFPVTGRTVRQGVLYVSDRPVTETSAATDPVTPVTESHIPTL
LGCAQLAAQAGETPAELARRIAAAAPVVVVDALDDADVQRLARAIGVLGQRAVPVGSGGLAAPLAWVWAGGQAAGPVLVV
VTSQHSAARQQAAALQQAGARTWAPTLAQLADDRNWAAWTAEVEAAEHGMPAVDALMLLAPEGRLAGLDADSVARRLGEL
AARLVLAHGAAGVVATGGDGASAVLAALQASGIALVDEVTGGVPLGTLTGGQAAGLPVVTKAGGFGEQDVLIRAAQAIRE
RRFTK
>SEQF1086_CAE42099.1 putative pyridoxal phosphate biosynthetic protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQDATPSRIPTLAVTLGDVAGIGPEITAKMLLGHDELRQRARLLVVGDAAVLAQAVQAVGGDPARVRVIATPAEATNQP
GSIEVIQAGPSLAHVPPGQLSAEAGDGSVRYVTTACALARDGLIDGIVTAPLNKAAMHMAGHKWPGHTELLAHEFGVKTF
SLVLSAGDLYIFHATTHVSLRQAIEDVNPQRMRAVLRLAGSFARALGRADHPVAVAGLNPHAGENGIFGTEDAEILAPAV
TQANNAEGILAAGPIPADALFPQAVRGKWKFVIACYHDQGYAPFKSVYGDDGVNITVACRWCACRSTTAPRSTSPARASR
EDSLVLAAERAAQLAPGWHQVWETARSTTGG
>SEQF1086_CAE42100.1 probable GntR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALSAIEPFALDRSGATPLHAQVADAIRNHIRDHRLTAGTVLPSEAALCHSFGVARSVVRQALGALVAEGLIRRDPGRAP
VVAPPREHRRMVQRSAGLYEQFAGLGVALRTRVLACRPAEPPPEVAAFFGTTETLLLERLRSVDAQPLAYVRTWLPRAAI
AGLAADHLQDASLHRVLAQRFGLRPGRGRNRIRAVAAEAALAQALDVAPGSPLLMLEGQGLDQDGHPLEWFTTWHRPENL
VFDVDVGQERESVQPALTCGTAAVAPPAVAAPPSGALDAVEQSLLQALQAVRRAREDQQE
>SEQF1086_CAE42101.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTRIRSLHIYPVKSCAGIDLAESIVDRAGLAHDRRWMVTTAAGQFMTQRQYPQMARIRTALEDGMLVLRAPGMEDLRIP
ADGSELAERTQPVGVWRDTVIARAEHPRSAEWLSRFLGLPCRLLKIDLRADRTANPEWVDTWLERHPEWAEDFAGDHFFG
FADGFPLLVANQSSLDELNERLAARGQAPVPMNRFRANIVVEGDWPAFEEDQTACIVAGGVRMAFVKPCTRCPMSNVDQV
TAEVYDELGLTLTTFRSLEIGVVFGQNAIVDRTAPAPLRVGDAVEIELDF
>SEQF1086_CAE42102.1 aspartate 1-decarboxylase precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQRIMLRAKLHRVTVTEADLHYEGSCGIDEDLLDAAGMREFERIELYNVTNGERFDTYIIKAARGSGAISLNGAAARRAQ
VGDLLIICTYGPMSEEQSAAHKPQVVLVDDANRVKEIRKFPA
>SEQF1086_CAE42103.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehy drase reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSFQVTIEPSKHQFQAEAGQTVLDAALAAGIVLPYSCRTGACSTCKGKVVAGEVDAGPYPAQILSPEDLAQGYTLFCQAK
PQSDLVVESTEVRLASDIQIRKLPSRVQTIERVAPDVAVLKLQLPASEQFRYYAGQYIEVILKDGKRRSYSMAGAPHTGS
PLELHIRHMPGGLFTDHVFGAGDTQMKEREILRLEGPFGSFFLREDSDKPIVLLASGTGFAPVKAIVEHMIHNQIQRPVV
LYWGGRRPRDLYHDALAQSWAGRLPGFRYVPVVSDALDEDGWSGRTGYVHEAVMQDLPDLSGYEVYACGTPLMVDAARRE
FSAQCGLPAEAFYADAFTSEADLAKATP
>SEQF1086_CAE42104.1 D-amino acid dehydrogenase small subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKVAVLGSGIIGVSSAWWLSQAGHDVVVVDRCTGAAQETSLANGAQISVSYAEPWANPQAPFKLLKWMFQDDAPLLFRPQ
LDWRQWQWGLAFLRECLPSRLAPNIRAMVRMAEYSRATLQGMRAELGIQYDHLERGILNFYRDQREFETSQRAAGLMRDF
GVERRVINADEVVAIEPALAPHLQTIVGGDYTPEDESGDVHLFTAALARRCEAAGVEFRFSTRVTRLLGEGGRVQGVELI
EPDGRYGRLDADAFVVAMGSFSAQLVRPLGVPCMVYPAKGYSATFPVRPGALAPVVSLTDSSHKVVFSRLGERLRMAGTA
ELSGYSRGLNTGRCEAMTRLARELFPDALDFERVSYWSGLRPSTPSNVPLIGRTSVSNLYLNTGHGTLGWTMGVGSGRAL
ADLLSGRRPEPEFPFLGL
>SEQF1086_CAE42105.1 glycerol-3-phosphate-binding periplasmic protein precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTGFARAMRASRRACVLGLAMAAMGVAQAADSVEIQVWHTLSGPNKAEFEKLAKQFNKEQGDVVVKLRDFGNQDDLKKEA
VSAVKSKKGPNLVQLADNHSPEVVAEHKSILPLHQLLAKYPVKDLNWFLPSTTSFTRDGKGRLLAFPWMAEVPVMFYNTA
YYKKAGLDPNKPARTWADLQAELLKLRDVANIDCPYATSDQVTVHLENLAPVNNQLYATLNNGLDVAKKGSPSMQFDTLY
MRHVSLMVSWKRSLLLTAYSDDNKSDQLFAKGECAVLTTSSSALGQFLNTRSLSFGVAPLPYYDQVTKTGGRPFVSGSAL
WAMEGHPQAEEKATAKFLAWLSKPVIAAEWHQRTGYLPLTEAAFRASDVSFYNKVPGAQQLVELMRNPPAATSRGFRIAN
YERIEPVLNTQLTAAFDGKTPPVAALNNAASQARSLAAQR
>SEQF1086_CAE42106.1 probable LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRPQADLSTRQLRAFVMLADLRHFTKAAQACHLSQPAFSALIQSLEATLAMQLFDRSTRRVVLTQEGELFEPLARRLLAD
LGHAMTHIASFVELRRGRVHVAALPSLAAGWLPKVLHEFHAEHPDIELMLSDVLSDECIELVRSGQADFALASRGIRASD
PAVLHARELCSDTFHLICRKDHPLAREPRLTLKHLAPWPFIHLTRNSSVRQTVEAALRPQVAKTILEVAQLATVAGMIEA
GLGISVVPTFTLYQFERPGLLIRPISLPGLTRQIYIVRRQEERLSIAAQALYDLVVAKLGTPAASPARPRRRRTEKRD
>SEQF1086_CAE42108.1 hypothetical protein BP1822 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLVPLFRVAHARTGDKGDRSNISVIARDRALYPLLVEQLTPEVVLAQFAHRRPAGAQRYLLPKLGAMNFVLDAVLDGGVN
GALNLDAHGKALSYLILKTEIAVPSDLVCRLAGSPG
>SEQF1086_CAE42109.1 probable extracellular solute-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRYLKSTYAAVLLAIGTAVPHATTLAQEVKVAAEAPLRLLDPVGTTAYITRNHAYMVYDTLFALDAQLKPQPQMVSTWSV
SPDKLVYRFTLRDGLKFHDGSPVTAADCVASIKRWAQRDLTGLRMMAAAKEITAKDDKTFEIVLEQPFGAVIEGLSKASS
LPAFIMPKRIADAPASQAITEVIGSGPFRFVASEYRPGLQVVYERNTDYVPRSEPPSGLAGGKVVNVDRVVWLSLPDIQT
EANALAKGEVDYVQTVYPDVVQTLEASKDVVIQKLASTTTPTLRLNWLQPPFNNQKVRQALLHAVSQRDYMDAQVGDPKA
YRVCWAMFGCDSPLASTAGVVSQDDEADLNAAKALLKESGYKNEKAVVLHATDYPPTSAISPFTAQILRSIGMKAEVQSM
DWATFLTRRGKQDPVEKGGWSVAYGSWNTLDLMSPIANLNLDGRGKEGYAGWTESAEMESLRTQYAQATEPASRQQIAAK
IQQLAYDQVFYIPLGTYSNYAARRSNVTPLLDAPVTVFWGISKN
>SEQF1086_CAE42110.1 probable inner membrane component of binding-protein-dependent transport system [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQILRLLFLRLASAIPVVLVVVTVVFLLVRLTGDPATILAGDMASPEVVASVRADLGLDRPLLGQYAQWLWDLLQGNLGT
SIVTKQPVATLIGERLESTLVLSLSALVVTVLLAVPLGVLAAWRHNTLVDRVVMIYAVIGFSLPSFVVGYLLILMFSVWL
GWLPVQGYVSITDDIWLAAQHLVLPTLALAIFYMSLISRVTRASVLEVLNEDFVRTAKAKGVPPLRILSQHVLRNAAIPI
VTVIGIGLAFLISGVVITESVFNLPGLGRLTIDAVLSRDYPVVQGVILFFACVYILVNLLIDMLYVVIDPRIRY
>SEQF1086_CAE42111.1 probable probable inner membrane component of binding-protein-dependent transport system [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTSILRHNRLALLGGGVLLLMVAISVAASWIASTDPAMMQPRMRLTPPGEAFLLGTDALGRDVYSRVVHGSRMSLAIGAL
VVLITIAIGTLIGLVAGASRIMDRVLMRIMDGVMAIPGILLAVALVSLFGASLASVVIAIAVPEIPRVVRLVRSVVLSVR
EEPYVEAAVGLGVPYPKVVWRHILPNCFVPLIVQASYVFAAAILLEAVLGFLGVGFPPEIPTFGNILAEARPVFQRAPWA
TVAPGLLLAVTVLAVNLLGDGLRDSLDPKLARRAND
>SEQF1086_CAE42112.1 probable ATP-binding component of ABC transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTENTPKQRVLEVSGLAIRAGARTLVQDVTLSLAQGEILCLVGESGSGKSLTASAVMGLLPGNLGVGAGSIRLDGEDLTA
ASPARMQALRGDRMAMVFQEPMTSLNPLMRVGRQIAEVLQVHRPDLGAGQVRARVLELMGDVHLPTPEALMDAFPHQLSG
GQRQRIMIAMALALEPALIIADEPTTALDVTTQVQVLKLFRQLLAKHSSAVLFITHDFDVVRDIADHVAVMQLGRIVEQG
PAGQVLDAPRHDYTRKLLAAVPSGVPKTQQNASSDELLSVSGLNLVYESRGLLGPARRTHAVADVGFTLKKGETLGVVGE
SGSGKSTLGRCITRAHAPTSGRIVFDGVDIAGLSGKALRAVRRRVQMVFQDPYRSLNPRRRILHALIEGPIESGVDRKTA
CARAAELMALVGLPADGLQRYPHQFSGGQRQRICIARALAMEPDLIVADEAVSALDVSVQAQVLELFEDLQKRLGFAMIF
ITHDLRVAAQVCDRIGVMQKGRLLELGPVRQVIHAPQHPYTRHLFDSLPGRVGQTAEPAMELQA
>SEQF1086_CAE42113.1 putative amidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTSTDQHIARAGVAELARGIARGAFTPTEVTDVFLRRIQDLNPAIGAFVAVYEDEARHAARQATQALAQGQRLSPLHGIP
FAVKDIVDVAGKFTTYGSRTGAGRQAGATAEYVRALLDAGMILLGKTHTVEFAFGGWGTNQRMGTPRNPLRADVPCATGG
SSSGSGAAVGAQMVPFAVGTDTGGSIRIPSAFCGLTGMRPSMGRHSGAGVMSLSHTLDTIGPLARTVEDVQMLDDLLTGK
TATDTAQPGSQAVARVRDARIGVLGAQWLGAIEPEVAHAYAQSLRAFEAMGAMLVELALPFDREAFAQLTSTLIACEGLQ
FAGKYAHDPLSGMDEDVRARFLVGDQYDAEAYAGLLGRRSAMIDTFTQAMAGVKALLMPTTPCVAQPLAGLEQSPYNPAV
YTRLPAWLGCCALAVPNGTGAHGLPTSLQIVGLPESDRLVMSLGRAYQEYA
>SEQF1086_CAE42115.1 lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKARRLAMAGLSLALGGCSLSQQMQAMRDAATSLRARLLEGQQAVGRAGERPAREAAQDVARPWLAGRAQPLAREVLLPP
ALRADVDTTLLFAGKATLPVLAERLHRATGIAVRVHPDALLPRAAFLPRLAGQAELAAEPPAQAELRAGPRPLADTLDAL
AAQLYVHWRYHRGAIEFYRTETRVFDVRTLALAASAQARLGRAGSGETGSFDHASSTVLSADAGKALQAVRDRVAAFLTR
AGVIAEIEAGGSTLAVTDTPEALARIEKYLQGENRALTRRVRLVFEELTVRTTAAAEGGIDWQAVYASARAAASYAMPGG
AGAAGALGARVLAGPWRDARALIAALSTMGAVLRHRSIPMLTLNRRAVTHAVRTTFSYVDQVQRLSPTAAAPGGRDAVPG
LAVQQKRETVGTFLTLLPEARDDGRILLSISYDNTIAQPLRTLTFGEGGQQVSLQQIAIDGSGIVQQVELLPGQPVILSG
FDHSEDQYERHRLFPDAPLAAGGHDRTARERVTTVVMVTAQIDEG
>SEQF1086_CAE42116.1 hypothetical protein BP1830 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRAATHPPLVLQQTQGGPMLAFGLTWFAVLGSHAALQGRARARALRATHYVVGGRHAVAAGCARLPRRYGAMAIHSAAQA
YASLHPDGAQAGVASLPDGQGWLIAVQDGAVLASADRLFADAAQAQACLRTLLAQRPDLREVPAQAALDTLLARPDPSAR
LAPLASRWSRAPVAARAVVLALAVAGGASLWRGLGQAPPPAAPDPRAVWRAAQAEFLRGWPVHTSSELARVLDTLQALPL
QVAGWALRQAQCVPGPAWHCDADYHRVDAAATSLAFAAAVPPGWRMRLHTLEHTRVAWTLAGDQHGLDRTAPASPADTLA
LAATLQRASAAFTHVSVGAAQALAGPAWDGPPELAPPAAPELHRREVVLDGPLRSLALVWPLPAPIGWTAVSLRVVPDAI
ATLRASVLSLHLQGSLYEQTTSRS
>SEQF1086_CAE42117.1 hypothetical protein BP1831 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRELLRRETLAAAQPPRPAAPAPWSDAPAARKAAPGPRADRIVLLAIYGVGAALRAEVSINRRHWRYLAGQRRPFGQAPE
ARYQLEAIAAPCVHLRSGAVRRTACLAPAASLDNGAASAAGAAP
>SEQF1086_CAE42119.1 putative general secretion pathway protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAEHAALASAWRAAGALGQRLDAWRFGAERGDYYEYLADMLEGLQGRQTLRDIFETDAARHGEASVRGRLARRWLHRYQD
CGGDLRATWARCLPEGDCTLLALAQAAGGGALGIVLRDLAHLTRLTQGMRREFCVTIAAGLVAMTVACALLAAVPAFSAP
RLRLVFQAVPPDYHGAWSAGLFALARYVEAAWSAAVAALTAAVALVCWSLPRYAGRARVFLDRWQPWRLYRDMQAIRFLA
LATVLLRQRGNIDTRLRTALLVQGADAPPWLAWHLERMLLRVDAGVVDASVFDTGLFEPAHAWFMADMVAAHGLADGLAR
ARTRVEAHMLPRLRRQAQGLRWALLLGAVGAVLALALWHYAAIDDLRHALVSFYASQ
>SEQF1086_CAE42120.1 putative fimbrial protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSHTILSGRQAGFSLVEVSIVTAIVLLVAIIGIPAIGSYVIESKVPRVGEELQRFVARTKANAQGDGAAPYTGIGTASLA
HALRDSSVVSVRGEGASATVAHGLGGQGAGAHGVISVAPAAPGGAPPGSAFTLTLTNVNGAACPALASVMQRVSDIIAVQ
GKAGPVVVKNALAVPALPYRAQAAQAQCVAGDRNTFVFTAR
>SEQF1086_CAE42121.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRSAHAQGGLALLELAVAAALAAMAAVWAANRLVQDAQDAAARGAGVWLGEIQRGLDQLLQRHFDTLADGLAPRDERGRA
LFRDAWRPTLPELQAAGLLARSLPRHSPLGTGVIMLVRRDPHCPRAGCRLDALAWLDRPLLDGHGQVDLMRMAPLVAATA
GRGGFAVAGGVRGAAFRFANPPWPGVARLPAGTPLAWAGLAAGKASPAFGGAYSVNSHVGCRSYSGHTSRNPLTGQCSCP
PGYASVIMAQAIDRVDGAPGFTSFVCVRPGKE
>SEQF1086_CAE42122.1 alanyl-tRNA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKSSEIRQKFLQFFQSKGHTIVPSSSLVPANDPTLLFTNSGMVQFKDVFTGKEARAYKRATSSQRSVRAGGKHNDLENVG
YTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTQVYKLPAEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGAR
YASDNFWQMADTGPCGPCSEIFYDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMERLPKPCVDTGMGLERI
AAVLQHVHSNYEIDLFQKLIAAAARETGVKDLADNSLKVIADHIRACAFLIVDGIIPSNEGRGYVLRRIVRRALRHGYKL
GQTKSFFHRLVPDLVAEMGEAYPELAQVAERVAQVLRQEEERFGETLEHGMKILDGALAKVAKGDPLDGTTLFTLYDTYG
FPVDLTADICREREVEVDMAGFEAAMQRQREQARAAGKFKMAEGLSYEGAETRFEGYENLELSGVKVTALYVEGTQVEQV
SAGQDAVVVLDATPFYAESGGQVGDTGLLEAGGVRFAVADTLKIQPGVFGHHGTLEAGALKVGDTLLARVDAVRRARTVR
NHSATHLMHKALREVLGAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQATEAKVMAYDDAVKGGAM
ALFGEKYGDTVRVLDIGFSRELCGGTHVRRTGDIGLFKVVSEGGVAAGVRRIEAITGDNALAWVQDQNALLQRAAGVLRA
PAHELPERIAQVQEQLKALEKELEQARTKLAASAGNDLVATATVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVV
LLAAGSADGKISLVGGVTADLTGRIKAGDLVGFVAGQVGGKGGGRPDMAMGGGTDLAALPAAVASVQKWVDERL
>SEQF1086_CAE42123.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSASDTGGLPSYQHEVDASGLTCPLPILRAKKALAQMESGQVLRVVTTDPNAIRDFQAFARQTGNTLLAQREAEGRGEHF
LQRR
>SEQF1086_CAE42124.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKHCSILAPLTRLAACGALAAVLAVPLPAAARVGDAALVSVTGQITAVDPATRTVTVRGPQGNEVPLQAGPDVRNFDRIK
VGDTMRVDYYESVSIATRAKGSGVPEVRSETVATRAKEGALPQGAVGRSTTITAEIWHIAKDGRTVILQGPQGGRETFHL
RSAAAQEKLRTLKEGDLVDFTVTRALAAAVRSR
>SEQF1086_CAE42125.1 30S ribosomal protein S16 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLVIRLARGGSKKRPFYNLVATDSRNRRDGRFVERVGFYNPVAAEGTENLRIALDRVQYWTGNGALLSPAVERLVKEYSA
KVSAAA
>SEQF1086_CAE42126.1 16S rRNA processing protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSEAAHSGAAPADLVELGRIASAYGVKGWVKVQPHSAQAEVLRTVSHWWLTRPAPQAARDVVASVPRAYQVLQARVHGGA
VVAQLAGIDDRDQAEALRGCFVQAARSAFPAPADDEYYWVDLIGCALYSDADGEPRLLGVVDEVFDNGAHAVLKVLRQQI
QPGQPGPVPLLDPKGRPLEELVPFVRAHIRHVDLAARRIDSDWPLDY
>SEQF1086_CAE42127.1 tRNA (guanine-N1)-methyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRFDVVTLFPDMFGLVRDQGVTGRAHAQGLWALHAWNPRDFTHDVHRTVDDRPYGGGPGMVMMAAPLEAAVAAAQAARAA
QGLQAAPVILLSPAGRRYDQAEATTLAAGTGAIFICGRYEGVDQRFIERCVTHELSLGDFVLSGGELAALAMMDAAVRLL
PGVLNDGDSALQDSFNAALDGLLDSPHYTRPEVYEGVPVPQPLLSGHHANIARWRREQSLRLTASRRPELIERARGEGRL
SKADERFLASLAGERES
>SEQF1086_CAE42128.1 probable class-V aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPATLTDELVAALRARTPGAQGAFIHFNHAGASLPSAGTLQAIKAHLRLEATQGPMEAGVQAREQAERARLLAARLLNAQ
PAEVALTTGNSAGWGAAFAALGPWRAGDRILVARHEWGGNLAAMRLAAQRAGATIGTIASDESGAVDPGALQAMLDERVR
LIALTWLPANGGLVNPAAAVGRIARRHGIAYFVDAAQAVGQLPIDVAEVGCDVLSGAGRKALRGPRGTGLLYVRQAFLER
LAPAWVDTWSAPLGEDGCPIVRGDAARFESAENSVALRCGLAHALHEALELDIASIRARIDAVATRLRTRLAALDGITLL
DQGRVRSGLIAFDVAGWQADAVQRELARQGIALGCNGVAYTPLDMQARGLRQIARASVSYLTTEAEIDALLDALAALARR
AP
>SEQF1086_CAE42129.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTASISVRVAELGLTLEPANAPAANYVPFVRDGNLLYISGQVPRVDGKPVHLGRLGDSVSDEEGVQAARQAALGVLAQLA
AATGDRLQGVARIVRLGVFVAAAPDFNRHSAIANGASDLMVNVFGEAGRHARSAVGVASLPNGVAVEVEAVVALAQA
>SEQF1086_CAE42130.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE42131.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHAFYDSIPARADGSAQCAPLASLRVIGAAGADALAFLHGQLTQDVTGQPADHARLAGYCTAKGRLLATLVMWLAAAADE
SAPVWQALVRADVAEAVLKRLSMFVLRAKARLAPVPAWAAGVQCAPAALAALQDAAGGALPAAPWQRAELPTGTWIGAPS
ADAQPRWWWIATEAQLERAGALAAHLGRASESAWQAADLAAGLPWIGAATQDVFIPQTVNLDLIGGVSFTKGCYPGQEVV
ARSHYRGTVKRRMAHGVIAEAPADLPDPLAGQDIYDSARPDEPCGRVVDAARSDGQLALLFETTLASLPDGDLRLLSAQG
PRIALAPLPYELAGNAAG
>SEQF1086_CAE42132.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRKRIRFYFLLLVLVALLGAALAAGGAWTWMHRPVALKSDRIDFVVDPGSAPRAIARTLNQAGVAVWEPGFVWMARLSEL
DKQIKAGGYQAIDGDSPWQLLQRLARGDMSQRQITFLEGWTFRQMRQALREHPDVKQTLGETSDEALMERLGSTVTHPEG
MFFPDTYVFTPGSTDFDILRRAYQEGQRILESTWAKRQDGLPVGTPYEALILASIVEKETGHGSERARVAGVFANRLRIG
MLLQTDPTVIYGMGEAYQGRIRKRDLQTDTPWNTYTRPGLPPTPIAAPGRAALLAAVQPERHKYLFFVSRGNGTSEFSVN
LNDHNRNVSRYILGQGQPQQGSQQ
>SEQF1086_CAE42133.1 thymidylate kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTPRGRFITLEGVDGAGKSTHTAWMVQALRDLGLTVLATREPGGTPVGEKLRELLLSEPMALETETLLMFAARCEHVREV
IAPALARGEWVVCDRFTDASYAYQGGGRQLGAARVAALEQWVHPDLQPDRTWLFDVPLDVARARLARSRQLDRFEREEDA
FFERTRAAYHERARSSDGRIRIIDSSRPLEVVRAQLDSEVRELVAQAA
>SEQF1086_CAE42134.1 DNA polymerase III, delta' subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLGRFLPWQTEIARSWLSGRDRFAHAWLIHGNGGIGKLDFTAAAAASLLCESPRQGLACGECAACAWVASGNHPDLRRI
RPEAVALEEGADQTEGAEEAEAGSGGAAAKRAPSKDIRIDQIRALEPWFNTATHRGGWRVALLYPAHALNVISANALLKV
LEEPPAHTVFLLVADAPDRLLPTLVSRCRRLPLPTPSAGQALQWLGEQGVEPAADWLAAAGGAPLAAQRLAARGDAPCPA
WLAQLVQPLAAGKAPDVGTLTENLEKVAAAEWIDALQRLFTDLTLAAHGAASRYYPLLAEPVRQAAARAQPAQLAETARW
LSRQRGLATHPLNAKLFVHAALQRVVLSCQ
>SEQF1086_CAE42135.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYVDSHCHLNFPELAQDLPAVLDRMAANQVTHALVVSVNMPDWPGLMQLVEPHGNLWASVGVHPDYEDTPDPEPAELERL
AAHPKVVAIGETGLDYYRLSEPLDWQRERFRRHIRAARSTGLPLIVHTRASAQDTVRLLREEGADEVGGVMHCFTESWEI
AQQAVALNFHISLSGIVTFKNAQLVHEVAANMPLDRLLIETDSPYLAPVPYRGKLNDPSKVIHVAEKIAELKGIPVAEVA
HASTENFFKLFNKIKR
>SEQF1086_CAE42136.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPLRTRFLRWRGAAAGGLLAGALLASPAWAAKQADWWVYVHNDKARDIGALLAAGADPNVRYDNGQPAIMRAVVDNAWE
VFDVLAANRRTDLNAENPAGETPLMYLAVAGQTERAQALIARGAQVNRLGWTPLHYAASKGRLETARMLLGKQALVNAPS
PDGTTPLMMAAYSGDRRMVQLLLDAGADITTRNLKGMSAADWAAFGKSEALARELKPMIARAEAERQARHGAVATSKLAP
AAETPPTAQPAAASAAASQPGEGRSLSGVSGVRLNSYD
>SEQF1086_CAE42137.1 probable transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQEQAIAGGAERVLYVLATLAREEAPLTVAALAERTGLAQSTLYRQVALLKRWGFVLEQAGAYTPGPLCVQLARGFDQSS
YLIQEALPDMTRLAADSGETVGLLVAMSDQAVCLEMVESRHPLRCSFVKGRGLPPLARGASAKSLMAFMAPARLQGRLHE
LAGQGVDAAALARDLEAIRAAGYAVSDSEVDAGVWGCSAPVFERPHQAAGSVTLMAPSTRVAERTANLINLTLAAAKRIS
SRLQHS
>SEQF1086_CAE42138.1 putative glutamine-binding periplasmic protein precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTRRQLLTAALTLNLAWGAGAAHAQETIRAVTDATFPPMEFVKDGKRTGFDIELVEALAQAMGKKIEWIDIDFKGLIPA
LQAGRADIAVSAIYITAERQKVVDFTDPYYAGGLVVLTKKDGPVKSLKDLEGRKVSVQVGTKSVNYLKEHFPKVQRVEVE
KNQEMFNLVQIGRADAAVTGKPAAKLFAQSTQNLAVLSEQITTEEYGIAVPKSKSGLTRELNEALKKLKADGTYERIVNK
WFEAQAK
>SEQF1086_CAE42140.1 glutamine transport ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTQEMIRIRGLRKAYGEHEVLRGIDFNVEASQVVVVIGPSGSGKSTLLRCCNGLEVAQGGTIDICGHNLLKDGRLLPEA
ELNRLRMQVGMVFQGFNLFPHLSVLDNVTVGPRTLRGMSRAQAEELGGDLLAKVGLREKMAAMPGSLSGGQKQRVAIARA
LAMQPRVMLFDEPTSALDPELVGEVLQVMKLLAREGMTMMVVTHEMGFAREVADVVAVMDGGSIVESGPPELIFSQPREA
RTRAFLQAVLSASQGAA
>SEQF1086_CAE42142.1 glutamate dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQAPAHSLPSYLDAEHLGPWGIYLQQVDRVTPYLGPLARWVETLKRPKRALIVDVPIEMDNGSIAHFEGYRVQHNTSRG
PGKGGVRFHQDVTLSEVMALAAWMSIKNAAVNLPYGGAKGGVRVDPRTLSHSELERMTRRYTSEIGVIIGPSKDIPAPDV
NTNAQTMAWMMDTYSMNEGATATGVVTGKPIALGGSLGRVEATGRGVFVVGCEAARDLNLDVSKARIVVQGFGNVGGTAA
RLFHEAGAKVIAVQDHTGTIHNDGGLDVHKLLAHVGNQGGVAGFTGAQQLADDDFWGLETDFLIPAALEGQINENNAARV
RAKVVVEGANGPTTPEADDILRENGVYVVPDVLANAGGVTVSYFEWVQDFSSFFWSEEEINQRLERLMREAYSAVSQVAK
EHKVTLRTAAFIVACTRILQARQVRGLYP
>SEQF1086_CAE42144.1 N-carbamoyl-L-amino acid amidohydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNNSPISIDGQRLWQSLMDLARIGATPKGGNCRLALTALDGQGRDLVTGWMRDAGLTVRVDQVGNIFARRAGRDPSRAP
VMTGSHIDTQPTGGKFDGCYGVLAGLEVMRTLDDHGVQTDAPLEVAIWTNEEGSRFLPVMMGSGVFAGKFPLETALTARD
AEGKSVADELRAIGYAGADPVGGRAVDAYFEAHIEQGPILEHEDRIVGVVTGSLGVRWYDVVVQGMEMHAGPTPMPIRKD
ALYAASHLLQAVVEIANAHQPHGRDTVGEIHAYPGSRNVIPGQVRFTVDLRHEDEATLATMDALWRQACADTAARHAVSV
QCEQVQYFAPTPFHPDLVGKVRDGAQRRGLPAMDIVTGAGHDAVYMAAVAPTAMIFVPCKDGISHNEIEDAQPAHLEAGC
NVLLDAMVARANAPR
>SEQF1086_CAE42145.1 acetolactate synthase large subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTPALPERNGGQILMQQLRVHGARRVFMIPGESYLPCIDALNEHRGAIDAIVCRQESGAAYMAEAYGKLTGEPGICFVT
RGPGATNASIGVHTAYQDSTPMILFIGQVGNDFMEREAFQEIDYRRMFGQMAKWVAQIDRTERIPEFIARAFAVATSGRP
GPVVLALPEDTLWGRARVADMPRYRRARCLPGAADLARMVELLDQAKRPFMLLGGTGWSAEAIGQAAAFAERFELPVGTA
WRRLECFDQRHPNAAGHVGWAMAPELRQRIAGADLVLAVGTRMGEATTEGYTVIESPLPRQRLVHVYPDPNELGRVFAPT
LGIVADPAGFAAALDALRPGHRASRAQAVRAAHDEYLATLAPLPSPGPLNLDSAAAYVNQHIPADACITVGAGNYALYPH
RYRQFSGPGTSLAPTVGAMGYGLPAAISAKLENPARTVVCYAGDGCFQMNMQELGVALQYRVGVVVLVFNNGIWGTIRAH
QEREFPGRAIALDFQNPDFTQFVRAYGGYGEAVERTEDFGPAFERARAFAEREQLPALLEIRYEADGIAPGQTLTEIRQA
AQAQAAGVQ
>SEQF1086_CAE42146.1 citrate lyase beta chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTPISNPGGQRRPASLRRSWMFVPGLLEQAQAAGLASGADALVADLEEFTAPADRPAARRRIVALLAQCRAAGVIGAVRI
NKLEEDGLDDLRGIMAGAPDAIFLPHAESAAQIAALDRAISACEAEAGLAPGSTEIVPTLESALGVTRACEILTASPRVS
ACLLAAEDLTASLGAERGPDGIELHALRARFLVDCVAAGCLPIDCPFNYRDPAAQQADLLWARRIGLKSKCAVFAEQVPA
IHAAFTPDADRVAAARDLAARFEAQRDGRDAGGARVDPPDYNTARRLLARHAEFEQWAARAARPRESQGEQS
>SEQF1086_CAE42147.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTGALFLMGVFTVTVLIDMPIAFGLVLACLAYLAVYDAAPMMVAAQQYVVGLDSFTLLAIPLFILAAQLMNGAGLTQRI
VRLCAAIVGDIKGGLAVVAVLACLMFGALSGSGVADVIAIGSLLLPAMARSGYDKGFSCALIGSAGATSTIIPPSIVLIV
YGTITDTSVGKLFLAGIIPGILLGASLIVVAIWQARKHNWAGGQPFSWGELRAAAIDALPALMVPVLIIGGIRFGIFTAT
EAASSAIVYALLVGFFWYRTLSLKSLWESLKSTGEGSASILLLIGASGLFAWVLVAEQVPQALSGLLVDWTDSKIAVLLV
LTVVLLLLGTFMEAIPVIIIVAPVVMPVLAHYNIDPVHFGILLSINMAIGANTPPVGVDLMAACKIGGINMMQTLRPLSW
MMLAMTAVMLLLTFVPELVLFLPRHVQ
>SEQF1086_CAE42148.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLGRISHALSGLSKAIAALAVALLAALITYVVFERFVMHTTPHWAEELPRLVLVWAAFIGGVTCSHERTHLMAGLLPFVV
RNPRALAISDRVNQALIIVGLAALGYAGWQLAELTMDQTLPALDVSAGTVYLALPAACAITIVVHLAQLFQPADPVAAKD
>SEQF1086_CAE42149.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQLTRTLTSLFAAAGLALAVAPAAHALDIKLGHVLAPSHSWNKAAEGFAAEVKEKTAGRVNLILFPSGQLGNEKTMLEGL
QIGSQGAAIIGSGSLQPIEPKFGIVELPYTWTTSQQAYKAYDGELGAALAKLAEKKNLVIVSWWENGFRHLTNNRGPVNT
PADLNGLKTRVTPDKMRLDTFTALGANPAPLAFGELYSALQQKVFDAQENPLSIIYTSSFFEVQKYLSLTGHVWGPASLI
VSKPIWNRISADDRKIVQAAADKWRDAQRQMITEGDLQFVAQLKEKGMQVNEVDKAPFAAAVAPIWKTYETAYGPELMGL
LQKYREAK
>SEQF1086_CAE42150.1 GntR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGSFQAVAPTRLYRMIADQIAGRIRAGDFPAGGRLPAERELAEQLQVSRASVREALIALEIEGYVEVRVGTGVFVAAPRA
DGDYGVAPAPQPGHTDIGPFDLLDTRLLLEPECASLAAQKASPAQIAAISSAHAAMSLSDSPGAHDQAFHGAIAAACGNA
ALAAAISHIWHLSATSPVFSRLEQHFVTTKVWEAAEREHERILAAIVDRDPIRARHAMHDHLVGILARLREDFGSGAIR
>SEQF1086_CAE42151.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE42154.1 transposase (partial), partial [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
PDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAY
AHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE42157.1 putative amidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLPTLKQQSLALQEGRDTSSGLTQAALARAADPAGEGARVFTRVYAEQARAEARAADALRAAGVTRSAIDGLPISIKDLF
DVAGETTMAGSVARQGEPAAVRDAVVVRRLRAAGAVIVGRTNMTEFAYSGLGLNPHYGTPRNPWDRATGRIPGGSSSGAA
VSVTDGMASGAIGSDTGGSVRIPAALCGLAGFKPSAQRVSMQGVLPLSANLDSIGPLAPSVRCCATLDAILAGGDDADMP
APAALRGLRLAVPTTLALDGLDAHVSATFAATLAKLAEAGACIDEIAVPEFAQLADINSKGGFTAAEAWAWHRDLIERAA
DRYDPRVVARIRRGADMSAADYIDLLAARQAWRAGVEARIAGYDALVLPTVPVVAPAIADLEASDALFGSTNLLILRNPT
LINFLDGSALSLPCHEAGTAPVGLMVAAANGSDRRVLAIGMAIEDLLGG
>SEQF1086_CAE42158.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTILSLAGAGHQARLDARGGMLTGPTANLAPGHVQANLAILPQAVAGDFLRFCQRNPKPCPLLAVSEPGDPSLPELGLDI
DIRTDVPRYRVWRDGKLVDEPLDVRGLWRDDLVAFLIGCSFSFEEAMLENGLPVRHIEQGCNVPMYRTNIATHPAGPFSG
PLVVSMRPLKAADAIRAIQVTSRFPSVHGAPVHLGDPALIGIADLGRPDYGDAVEIRAGEIPVFWACGVTPQSVVAAVRP
EFCITHAPGHMLVTDLLNSRLAAF
>SEQF1086_CAE42159.1 regulatory protein BvgR [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIHWTNSARSSFEASLSPSRRTLRARLAPVEGPTVAELRAALKRDEFIPAFQPVVDAGTGSLFGVATTIQWAHRHWGLVP
EHCYMAALVRDNLHIALAQQLLAQVFDLAAAMRRGNRHVGLFIQPEPICLMSRSYSDDVLRNLDHRGLPPFALTLAVSPS
LLQSPYGQQSLHSLRRLHRAGCNLVLTVSTFDAESPPHLDALEICGIALMPELMYALRQGGRAGEACRAIAQQASAQRIP
VMAAGVVDEAMAQAADLLPCRYLLGDHVAPPMTGQRFLYWYYRREMPPNYP
>SEQF1086_CAE42160.1 virulence sensor protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPAPHRLYPRSLICLAQALLAWALLAWAPAQASQELTLVGKAAVPDVEVALDGDDWRWLARKRVLTLGVYAPDIPPFDVT
YGERYEGLTADYMAIIAHNLGMQAKVLRYPTREQALSALESGQIDLIGTVNGTDGRQQSLRLSVPYAADHPVIVMPIGAR
HVPASNLAGQRLAVDINYLPKETLARAYPQATLHYFPSSEQALAAVAYGQADVFIGDALTTSHLVSQSYFNDVRVVAPAH
IATGGESFGVRADNTRLLRVVNAVLEAIPPSEHRSLIYRWGLGSSISLDFAHPAYSAREQQWMADHPVVKVAVLNLFAPF
TLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSGEADMAGALFVNSARESFLSFSRPYVRNGMVIVTR
QDPDAPVDADHLDGRTVALVRNSAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRI
ASALDLPPAEIALATTRGQTELMSILNKALYSISNDELASIISRWRGSDGDPRTWYAYRNEIYLLIGLGLLSALLFLSWI
VYLRRQIRQRKRAERALNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTADAVLGKTIPEANVVGDPALAR
EMHEFLLTRVAAEREPRFEDRDVTLHGRTRHVYQWTIPYGDSLGELKGIIGGWIDITERAELLRKLHDAKESADAANRAK
TTFLATMSHEIRTPMNAIIGMLELALLRPTDQEPDRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRVLP
EGAIRVFDGLARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLAVTARPDGDAAHVQFSVSDTG
CGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVMRSAPGVGTTVSVDLRLTMVEKSVQAAPPAA
ATAATPSKPQVSLRVLVVDDHKPNLMLLRQQLDYLGQRVIAADSGEAALALWREHAFDVVITDCNMPGISGYELARRIRA
AEAAPGYGRTRCILFGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNEAVARAALPTPPSPQAAAPATDDATPTA
FSAESILALTQNDEALIRQLLEEVIRTNRADVDQLQKLHQQADWPKVSDMAHRLAGGARVVDAKAMIDTVLALEKKAQGQ
AGPSPEIDGLVRTLAAQSAALETQLRAWLEQRPHQDQP
>SEQF1086_CAE42161.1 virulence factors transcription regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYNKVLIIDDHPVLRFAVRVLMEKEGFEVIGETDNGIDGLKIAREKIPNLVVLDIGIPKLDGLEVIARLQSLGLPLRVLV
LTGQPPSLFARRCLNSGAAGFVCKHENLHEVINAAKAVMAGYTYFPSTTLSEMRMGDNAKSDSTLISVLSNRELTVLQLL
AQGMSNKDIADSMFLSNKTVSTYKTRLLQKLNATSLVELIDLAKRNNLA
>SEQF1086_CAE42162.1 filamentous hemagglutinin/adhesin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTNLYRLVFSHVRGMLVPVSEHCTVGNTFCGRTRGQARSGARATSLSVAPNALAWALMLACTGLPLVTHAQGLVPQGQT
QVLQGGNKVPVVNIADPNSGGVSHNKFQQFNVANPGVVFNNGLTDGVSRIGGALTKNPNLTRQASAILAEVTDTSPSRLA
GTLEVYGKGADLIIANPNGISVNGLSTLNASNLTLTTGRPSVNGGRIGLDVQQGTVTIERGGVNATGLGYFDVVARLVKL
QGAVSSKQGKPLADIAVVAGANRYDHATRRATPIAAGARGAAAGAYAIDGTAAGAMYGKHITLVSSDSGLGVRQLGSLSS
PSAITVSSQGEIALGDATVQRGPLSLKGAGVVSAGKLASGGGAVNVAGGGAVKIASASSVGNLAVQGGGKVQATLLNAGG
TLLVSGRQAVQLGAASSRQALSVNAGGALKADKLSATRRVDVDGKQAVALGSASSNALSVRAGGALKAGKLSATGRLDVD
GKQAVTLGSVASDGALSVSAGGNLRAKQLVSSAQLEVRGQREVALDDASSARGMTVVAAGALAARNLQSKGAIGVQGGEA
VSVANANSDAELRVRGRGQVDLHDLSAARGADISGEGRVNIGRARSDSDVKVSAHGALSIDSMTALGAIGVQAGGSVSAK
DMRSRGAVTVSGGGAVNLGDVQSDGQVRATSAGAMTVRDVAAAADLALQAGDALQAGFLKSAGAMTVNGRDAVRLDGAHA
GGQLRVSSDGQAALGSLAAKGELTVSAARAATVAELKSLDNISVTGGERVSVQSVNSASRVAISAHGALDVGKVSAKSGI
GLEGWGAVGADSLGSDGAISVSGRDAVRVDQARSLADISLGAEGGATLGAVEAAGSIDVRGGSTVAANSLHANRDVRVSG
KDAVRVTAATSGGGLHVSSGRQLDLGAVQARGALALDGGAGVALQSAKASGTLHVQGGEHLDLGTLAAVGAVDVNGTGDV
RVAKLVSDAGADLQAGRSMTLGIVDTTGDLQARAQQKLELGSVKSDGGLQAAAGGALSLAAAEVAGALELSGQGVTVDRA
SASRARIDSTGSVGIGALKAGAVEAASPRRARRALRQDFFTPGSVVVRAQGNVTVGRGDPHQGVLAQGDIIMDAKGGTLL
LRNDALTENGTVTISADSAVLEHSTIESKISQSVLAAKGDKGKPAVSVKVAKKLFLNGTLRAVNDNNETMSGRQIDVVDG
RPQITDAVTGEARKDESVVSDAALVADGGPIVVEAGELVSHAGGIGNGRNKENGASVTVRTTGNLVNKGYISAGKQGVLE
VGGALTNEFLVGSDGTQRIEAQRIENRGTFQSQAPAGTAGALVVKAAEAIVHDGVMATKGEMQIAGKGGGSPTVTAGAKA
TTSANKLSVDVASWDNAGSLDIKKGGAQVTVAGRYAEHGEVSIQGDYTVSADAIALAAQVTQRGGAANLTSRHDTRFSNK
IRLMGPLQVNAGGAVSNTGNLKVREGVTVTAASFDNETGAEVMAKSATLTTSGAARNAGKMQVKEAATIVAASVSNPGTF
TAGKDITVTSRGGFDNEGKMESNKDIVIKTEQFSNGRVLDAKHDLTVTASGQADNRGSLKAGHDFTVQAQRIDNSGTMAA
GHDATLKAPHLRNTGQVVAGHDIHIINSAKLENTGRVDARNDIALDVADFTNTGSLYAEHDATLTLAQGTQRDLVVDQDH
ILPVAEGTLRVKAKSLTTEIETGNPGSLIAEVQENIDNKQAIVVGKDLTLSSAHGNVANEANALLWAAGELTVKAQNITN
KRAALIEAGGNARLTAAVALLNKLGRIRAGEDMHLDAPRIENTAKLSGEVQRKGVQDVGGGEHGRWSGIGYVNYWLRAGN
GKKAGTIAAPWYGGDLTAEQSLIEVGKDLYLNAGARKDEHRHLLNEGVIQAGGHGHIGGDVDNRSVVRTVSAMEYFKTPL
PVSLTALDNRAGLSPATWNFQSTYELLDYLLDQNRYEYIWGLYPTYTEWSVNTLKNLDLGYQAKPAPTAPPMPKAPELDL
RGHTLESAEGRKIFGEYKKLQGEYEKAKMAVQAVEAYGEATRRVHDQLGQRYGKALGGMDAETKEVDGIIQEFAADLRTV
YAKQADQATIDAETDKVAQRYKSQIDAVRLQAIQPGRVTLAKALSAALGADWRALGHSQLMQRWKDFKAGKRGAEIAFYP
KEQTVLAAGAGLTLSNGAIHNGENAAQNRGRPEGLKIGAHSATSVSGSFDALRDVGLEKRLDIDDALAAVLVNPHIFTRI
GAAQTSLADGAAGPALARQARQAPETDGMVDARGLGSADALASLASLDAAQGLEVSGRRNAQVADAGLAGPSAVAAPAVG
AADVGVEPVTGDQVDQPVVAVGLEQPVATVRVAPPAVALPRPLFETRIKFIDQSKFYGSRYFFEQIGYKPDRAARVAGDN
YFDTTLVREQVRRALGGYESRLPVRGVALVAKLMDSAGTVGKALGLKVGVAPTAQQLKQADRDFVWYVDTVIDGQKVLAP
RLYLTEATRQGITDQYAGGGALIASGGDVTVNTDGHDVSSVNGLIQGRSVKVDAGKGKVVVADSKGAGGGIEADDEVDVS
GRDIGIEGGKLRGKDVRLKADTVKVATSMRYDDKGRLAARGDGALDAQGGQLHIEAKRLETAGATLKGGKVKLDVDDVKL
GGVYEAGSSYENKSSTPLGSLFAILSSTTETNQSAHANHYGTRIEAGTLEGKMQNLEIEGGSVDAAHTDLSVARDARFKA
AADFAHAEHEKDVRQLSLGAKVGAGGYEAGFSLGSESGLEAHAGRGMTAGAEVKVGYRASHEQSSETEKSYRNANLNFGG
GSVEAGNVLDIGGADINRNRYGGAAKGNAGTEEALRMRAKKVESTKYVSEQTSQSSGWSVEVASTASARSSLLTAATRLG
DSVAQNVEDGREIRGELMAAQVAAEATQLVTADTAAVALSAGISADFDSSHSRSTSQNTQYLGGNLSIEATEGDATLVGA
KFGGGDQVSLKAAKSVNLMAAESTFESYSESHNFHASADANLGANAVQGAVGLGLTAGMGTSHQITNETGKTYAGTSVDA
ANVSIDAGKDLNLSGSRVRGKHVVLDVEGDINATSKQDERNYNSSGGGWDASAGVAIQNRTLVAPVGSAGFNFNTEHDNS
RLTNDGAAGVVASDGLTGHVKGDANLTGATIADLSGKGNLKVDGAVNAQNLKDYRDKDGGSGGLNVGISSTTLAPTVGVA
FGRVAGEDYQAEQRATIDVGQTKDPARLQVGGGVKGTLNQDAAQATVVQRNKHWAGGGSEFSVAGKSLKKKNQVRPVETP
TPDVVDGPPSRPTTPPASPQPIRATVEVSSPPPVSVATVEVVPRPKVETAQPLPPRPVAAQVVPVTPPKVEVAKVEVVPR
PKVETAQPLPPRPVVAEKVTTPAVQPQLAKVETVQPVKPETTKPLPKPLPVAKVTKAPPPVVETAQPLPPVKPQKATPGP
VAEVGKATVTTVQVQSAPPKPAPVAKQPAPAPKPKPKPKPKAERPKPGKTTPLSGRHVVQQQVQVLQRQASDINNTKSLP
GGKLPKPVTVKLTDENGKPQTYTINRREDLMKLNGKVLSTKTTLGLEQTFRLRVEDIGGKNYRVFYETNK
>SEQF1086_CAE42164.1 chaperone protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARWRRRLGVAALGAAMLASLAPAARASLVITGTRVIYNAGSPETTVKMSNEGQAPALMQAWIDDGNAEAKPDEVQVPFF
LTPPLARVDPGKGQTLRIFFNGYPDGKTLPSDRESVFWLNVLEVPPKATPEEGHGVLQLTIRSRLKLFYRPKGLSGNPLT
AAADLTFKRKPNGVLEVHNPTPYYVNLQKLEVGENGAHGSKTPWMLAPLSSDELRLKGTGAKSVQYWAIDDFGGVTPYQA
AIAD
>SEQF1086_CAE42165.1 outer membrane usher protein precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKQIPLILAMSLAFAAAAKGESAPDMQAAVNFDSAMLWGGANGADLSRFNYSNALRPGNYIVDIYANNYPLIRQQVRFVA
AQTSGQGLKTAPAVACFTYGQLEAMQVRLRALDPALVADLKSSGRCEVLGKLFPDSRESFDFGENRLEVSIPQAYTINRF
RRDISPDEWDSGITAFRLGYQYNYADYIGGLRAGRRLDLNLYSGFNFKGWYLRNSSTLGWGQGRFTRRSQRTSLQTDIPS
WRARLVFGDVFSSGEYFAPYSMRGMLVGSDTAMLPYSERLYRPTIRGVARTRANVKVYQAGVLVFQDAVPPGPFAIDDYS
PASYGGDLRVVVTEANGAVQTFTVPYASAVRLILPGQTQWSFSAGRYRNYRNDGQDRPWVTQLTGRHGVADGVNLYGGLL
IAQAYQAGLAGLSWNTPWGAMAADATLSRSQLSTTGNANGSSLRFSYSKTLSGTNTAIRLATLRYSSSGFWNFADAVNAG
PVETNGRNGRFGLYSLLGRERPRGDFSVTLSQPLGGYGSLYVSALRRTYWGSSRVDQQTQLGYSTQVGRVGVNLDVSRTE
NRRSTEHQVMLNLSIPLYGATSSGVVTGSLARTGSAPVQQSVNYSGMSGERDQYTYGLGVQRAGTSAQYALNGSWSGTYG
EVSGQLTHGRSYSQYQINGSGGLVAHAGGVTFGQYQAGTIGLIQAEAAAGAKVVNTRNAAVDRSGYGLVSLTPYSLNEVE
LSPQDLPLDVQLESTVEQVIPRAGAVVALRFPTRHDVAAMLVAEPGSEGALVFGTEVRDGAGKVVGVAGQGASALVRGVS
ASGTLEVTRADGSICRATYDLKSAGQAVHGLPRIALACAPQGGGERGARAAGQAVAQPSAISISGKDHEPDIR
>SEQF1086_CAE42166.1 fimbrial adhesin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPARVISFCGAALAVWAGLAVQPAMAVDPPVDCGRALGLHFWSSASLISDQTPDGTLIGKPVVGRSLLSKSCKVPDDIKE
DLSDNHDGEPVDIVLELGSNYKIRPQSYGHPGIVVDLPFGSTEETGIAIYIDFGSSPMQKVGERQWLYPQKGEVLFDVLT
INGDNAEVRYQAIKVGPLKRPRKLVLSQFPNLFTYKWVFMRGTSQERVLAQGTIDTDVATSTIDLKTCRYTSQTVSLPII
QRSALTGVGTTLGMTDFQMPFWCYGWPKVSVYMSATKTQTGVDGVALPATGQAAGMASGVGVQLINGKTQQPVKLGLQGK
IALPEAQQTESATFSLPMKAQYYQTSTSTSAGKLSVTYAVTLNYD
>SEQF1086_CAE42167.1 hemolysin activator-like protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDATNRFRPGLVGRALVRAGLLFAVAACAQAQLLPGARDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSEAAAPARK
PDATSGHTVTVHAVDLDFGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPGVVDGVLKLK
VEWGRIKGWLIDGKPLEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGGKTGNITIVPADEYGYSYLDLQLQRRAL
PRVSLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVPLGRTRLDLQTGYSTY
RNLLKTRYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTRLDVSSKHYSDVTVGMQYSTQRGANA
YFGDLSFTRGVGVNNGKYAAYDERGPQGNVSRFNGSLAWTRYMALAGQPIQWASQLGFQYSRQQLLNSYQITVGDEYTVR
GYNLRTSQSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVGADVGALKSNHPDARTIRMAGLAAGVRFDLPYARMSFTYSK
PVGAQPGGAPRAPVWLYINAGLSF
>SEQF1086_CAE42169.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRFLDRLYGAAGLLAGLCTIGVLVSVLAAIIARQVGLNIPGTDAYAGYFMAAAGFLALASTLKHGEHIRVTLLLNALPA
PGHRRLDIFALCVGAILAAAFAWFSVKLAHDSWLFNDISTANDATPLWLPQLTMAAGTILFFIALLDELVRRVRGQGFAK
SQQIHE
>SEQF1086_CAE42170.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYKKLSLLAGTIVLAFGAGAQAQTKWDLPTAYPASNLHVENLTQFVKDVDSLSGGKLKITLHNNASLYKAPEIKRAVQGN
QAQIGEILLTNFANEDPVYELDGLPFLATGYDASFKLYQAQKPFLEKKLASQGMMLLYSVAWPPQGIFANRDIKQVSDMK
GLKWRAYSPVTAKIAELVGAQPVTVQQAELAQAMATGVIDSYMSSGSTGFDTKTYEYIKKFYDTEAWLPKNAVLVNKKAF
DALDPATQQALKKAGAQAEERGWKLSQEKNSWYKEQLAKNGMAIIAPTAELKSGLTEVGKRMLDDWLKKAGADGQAMIDA
YRKQ
>SEQF1086_CAE42172.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPILDRIAVASGAVAALFLALIGAIVAAQIASRLIGMQIPAADDFAAWSMAASVFLALPYAMLRGDHIRVTLLLQFLPKT
AHRPYELAATALGLALSAWAAWQTAGFVHESFAYDEVAQGMLRVPLWIPQICMPIGLALLTLMLARRLAMVARGRQPEET
AHG
>SEQF1086_CAE42173.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTTFAVLAAALALSTGAQAATSWTMTAEQPDANYLTQNARQFADEVKAATAGALEIKVQSNSTLLKRPEVKRGVQQGVV
QIGEVLVSALGNEDPLFEIDSVPFLASSFNESEKLWKATRPLLAQRLDKQGIVLVYGSPWPPQGIYTKKPVAALADLKGT
RFRAYSASTSHMAALMGAVPTTVQTPEVPQAFSTGVIDAMLTSPATGVDSQAWDYVKYYYDAQAFIPQSFVIANKRAFQR
LPAEVRQAVLDAGAKAEIRGWQTARAKTRELTDTLARNGMSVEPLPPQLAKELQAIGATMVSDWSKKAGADGQQLLDAYR
K
>SEQF1086_CAE42174.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEKHVAAPIRHDRDAMGELFIWTDIDPAHEEDFNQWYDREHMAERAGIAGFRWARRYRSQHGRRRYLALYRTEDLHVFGS
AAYRQAFERQTPWSLANFARMRDTHRRVMVVSPLAGAGTGAALGLLRLGSVELAARAAALAASAQEIEGVLALRVLTPDP
QLSTPLPSEDPAARVLDPVLIIDATTEPAAAAARSLAEQLELPTDGIQTFHLLWDLRADDLRAAP
>SEQF1086_CAE42176.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSTPLIASSAHLASGRAPDLSEVEFGLMIASHAFNRWTVRCMAAVGLPDLTANDVMVMHHVYHRQRPKKLADICFTLNV
EDTHIVSYSLKKLERHDVVRGDRSGKEVFYSVTPKGAEIIKRYAEVREQCLLDGLEAGAAGGLEFTRQLAHTLRSLSGLY
DQAARAATSL
>SEQF1086_CAE42177.1 5-oxoprolinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKWQFWVDRGGTFTDIVARRPDGATVTAKMLSENPEQYRDAAVAGIRKLLGIAPGQPVPADQVECVKMGTTVATNALLER
KGERTLLVTTRGFRDALRIAYQSRPRLFDRNVQLPEMLYEAVVEADERLAADGTVVRALAEDGLRADLRRVFDDGIRAVA
IVFMHAWKEGVHEQRAAAIAREIGFTQVSTSHEASPLIKFVSRGDTTVVDAYLSPILMRYVEQVGSELPGVRLMFMQSSG
GLTDAHRFRGKDAILSGPAGGIVGMVRTSELAGFDRVIGFDMGGTSTDVSHYAGEFEREFETLVAGVRMRAPMMSIHTVA
AGGGSILHFDGARLRVGPDSAGANPGPACYRRGGPLAVTDCNVLLGKIQPDFFPSVFGPDADQPLDVAAVRARFAAMAEE
VRTATGREMSAEQLAEGFLEIAVGNMAEAIKRISVQRGHDVTEYALTTFGGAGGQHACLVADALGMTTVFAHPLGGVLSA
YGMGLADQTEMRQKTVEQVLDAALMAQLEAGLDELAGQASAELLRQHVPADKVAVQRRLHLKYRGTDTALEVAFGPLEQV
RAAFEAGYRQRYSFLMPGRELVVETISVEATGGGEAATEAPVTRTRAAPLAARRTIRMFSAGQWRETPLYVREDLAPGDM
MAGPAIISEPNQTTVIEPGWQAEVTPRDHLVLRRVQARVQRRAIGTQADPVMLEVFNNLFMSIAEQMGYRLQNTAYSVNI
KERLDFSCAIFDAEGNLIANAPHMPVHLGSMGESIKTVMRANASRMRPGDAYVVNDPYHGGTHLPDVTVITPVFDRAGQD
ILFFVGSRGHHADIGGTTPGSMPPDSRTVEDEGVLFTNFQLVGNGEFRDREAREILASGRWPARNPDQNIADLHAQIAAN
EKGVQELLRMCDHFGLDVVRAYMGHVQDNAEEAVRRVISVLKDGRYTYRLDNGAVIEVAVRVDRQARSAVVDFTGTSGQL
ENNFNAPGAIAVAAVLYVFRTLVDDEIPLNAGCLKPLEIIIPEGSMLRPNPPASVVAGNVETSMCIVNALYGALGVLAAS
QGTMNNFTFGNARYQYYETISGGTGAGPLRIDAAGPADAGFAGTSVVQAHMTNSRLTDPEVLELRFPVRLESYEIRHGSG
GAGRYRGGDGGVRRVRFLEPMTAAILSNNRRHAPFGLAGGEAGAMGRNYVERADGRVEPLGPQDSAELAAGDVFVVETPG
GGGYGPA
>SEQF1086_CAE42178.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAFKPVSITGTRRQTGQALGKLARPLMATYLEQSTVWAALRPWRGHAYLEALAHEASQALPEIWDELEGLAEGLRMPLVD
ILLWNCRGDLLHKTSDGCTSIAWRGDEDTRWIAHNEDGDPFLYGRCHMVDVRPDDAPGYISFYYPGSLPGHTFAANRAGL
VQTINNVRIRQRHAGVPRMLLARAVLDCATLDDALAVLRDHPRAGGFHHTLGAAGEPRLYSVEASPAACSIGEVARGNGH
ANHLVHPGSEAIGQIVTDSSRSRQRHIENLMDHWQPPVDGARLVATLLDREGELPILRCSADDPDEENTLATALFEMRDG
GLTLQVHDRRDQPALRVTVCPAA
>SEQF1086_CAE42180.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKETLNEISTLMPQLVDLGINLGVALLILILGWWASSLLGGWVRRAAQRSPRIDPTIVPMFQSTVIWTVRIFTLIAVLAR
FGVQTASLIAVLGAAGLAVGLALQGTLQNIAAGIMLLILRPIRAGEYVALSSGSDGTVEEVGLFLTRLVQVDGIHITLPN
STVWNATIINYSRNANRRLDIPVTVHYGDDLGEAIARLEALVRGHEMVLQDPAPIVKASEYRDNGTVVNVRVWTQAAQYW
DLRWDLFHQIRRALGEAGFRAPIPVREIQGGGKDAAA
>SEQF1086_CAE42181.1 putative transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQETDSGAGPRTLRRGLMVLAALRDQGPRGLSVTDIARQTGIQRPTIYRLLAALLDAGLVVPLQGTKKYRTQLAADADLA
APNPRVRQMLPVLRRLADRTGDAVFLVVRDGDDSVSLHREIGSYPVQILATYAGKRQPLGVGSGSMALLAALPDEVAHAI
VQRNSGRLDEYGGMTPQEMHRLIENTRARGYSVVGNHAVRGALGVGCALLDAQGAPVLAVSVTAIIDRMPAQRQREIAGW
IGAELARLAPKA
>SEQF1086_CAE42182.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTKSQLPRLGRFAVRLFAGILGAAAIGATAHTAYPDKPVRIVVGFSAGGTTDVIARIMAKELTEALGQSFVVENKPGGGS
NIATDYVARATPDGYTLLFVAVTSAINQTLYKNVNFDLTKDFAPVALGAKVPNILVLNPSVPVKSVQELVAYTKANPGKL
AFASSGSGTSIHMAGELFKQRAGIDVLHVPYKGSAPAVTDLIGGQVQFMFDNMPSSWPHVQAGKLRALAVTTTERSASAP
DLPTMKESGFENFDVSSWFGLIAPAGTPPEVVNTLNAAMVKALDKPEVLQSYEKLGAVAQKTTPAEFGAFIKSEVEGWAP
VVKASGATVD
>SEQF1086_CAE42183.1 probable methyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQAFSRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHDTLEEALAPVT
LAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQL
AAWELRYALLAGTGQSLLPASSAQQANPGAAPADGAAVQALLAHWEQALVAVGFLDPAHPKKLMPRMKHLLTRSALSRDE
VDMLRGVCTAMIAPNRPK
>SEQF1086_CAE42184.1 inositol-1-monophosphatase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHPMLNTAIKAARRAGTIINRASLDLERLTVARKGPRDYVTEVDRASEEVIVEVLRTAYPDHAVLGEEFGLQGPEQAEFQ
WIIDPLDGTTNYIHGLPNYAVSIALLHRRQVTQAVVYDPSRNELFTASRGSGTFLNDRRVRVSGRIRYHDALLGAHWPHS
TDPDQGSGRFRAMAEGSASVRRLGSTVLDLAYVACGRLDGFCGVGLKPWDVAAGSLLVLEAGGLLADFDGEQGWLDTGNV
LAGTPKVFTHMLTALQPRTA
>SEQF1086_CAE42185.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEWLQDPAAWVGLLTLVVLEIVLGIDNLIFIAILADKLPPAQRDRARIVGLSLALLMRLGLLSVMSWLVTLTTPWFSVGP
MSFSGRDLILMLGGLFLLFKGTMELHERIEGGQSLDTGGPRVYASFWVIVTQIVVLDAVFSLDSVITAVGMVDHLAIMMI
AVIIAIGIMLLASKPLTRFVNAHPTVVVLCLGFLLMIGFSLLAESFGFKVPKGYLYAAIGFSVAIEALNQVARRNLLKLD
ARRPMRERTATAVLRMLGKRPPASDESDLPSAMPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAATI
RQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEGRVRRNRLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFG
AIEGLVTPIDVFEAIAGEFPDEDELPDIVAESENVWKVDGAADLHHLEQVLEIEGLIDESEDYSTLAGYLLARFGHLPKP
GDTCEFEGSHHRRVRFEVLQMDGRRVALVRVERLPYDTVDESEAADAD
>SEQF1086_CAE42186.1 bacitracin resistance protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDSTLHLLKAFFLGIVEGLTEFIPVSSTGHLIVIGDWINFASSSGKVFEVVIQFGSILAVMWIFRARLWQLIRGTLTGV
RQEVNFTRNLLLAFLPAAVIGAIFIKSIKQVFYHPGVVAVTLVVGGFIMLWVERRAPHTPGDAPGAADDTASDERASAHT
LEQISAKQALGVGVAQCVAMIPGVSRSGATIIGGMIAGIQRKTATEFSFFLAMPTMLGAAVYDLYRNIGLLSQHDMSAIA
VGFVAAFLSALVVVRAVLRFVANHTYRVFAWYRIALGLVVAAWIYAK
>SEQF1086_CAE42187.1 UDP-2,3-diacylglucosamine hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MWLASDLHLGPATPATAEAFLGLLQAAADEASALLLPGDIFDAWIGDDVIRAAPPWLAAVLHGIRAAAGRIPVYLGRGNR
DFLIGQELADALGAHLLPEPVLLETDYGRILLTHGDEYCTDDSAYQQFRAMVRNPQWQAQFLAKSIPERLAMAEQARGES
QAANQAKSMEIMDVNPAAVEAALREADVDVLVHGHTHRPARHVLSVDGRKRERWVLPDWDCDHADPPRGGWLVIDRDGLQ
CFDLVEDED
>SEQF1086_CAE42188.1 peptidyl-prolyl cis-trans isomerase B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTNPRVKLHTNQGDIIITLNAEKAPKSVENFVAYTKDGFYDGTVFHRVIDGFMIQGGGFEPGMKQKPTKAPIENEANNG
LKNDKYTLAMARTSDPHSATAQFFINVSDNDFLNFTAPTPNGWGYAVFGVVTEGTEVVDKIKNVKTGNRGFHQNVPAEDV
IIEKAEVLE
>SEQF1086_CAE42189.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTKPRLCTALLTLAIAVSASAPVLAQSMAGGSAKNRYANQTKLDPYPPEGGWQGLANLLEAAKPGVDTRLDPTPSQITD
RIEELLNRGANEEALSLIERREAAIKGQRGADVQLMFQHARALAALGRADEAIAVYSDMTTQFPELPEPWNNLAALYASR
GELERAQDSLQMALRANPDYAAARANLGDIQLMMALRTYRQEEARGVPGMKARVEEIESLLKDKQPK
>SEQF1086_CAE42190.1 cysteinyl-tRNA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLHIYNTLSRTKEPFKPAHAGQVRMYVCGMTVYDYCHLGHARMLVAFDVVQRWLRASGLAVDYVRNITDIDDKIIRRAVE
TGRRIGEVTEYYIAAMHADERALGVQPPDREPRATQYVGEMLDIIGRLESKGLAYRAEDGDVNYAVRGFADYGKLSGKSL
DDLRAGERVAVGSAKRDPLDFVLWKSAKPQEPDDTKWESPYGLGRPGWHIECSAMSKTLLGLPLDIHGGGPDLKFPHHEN
EIAQTEGAFGGALANVWMHCGPLMVDADKMSKSLGNFRTIRQTIAQGPLSDTQAEYAVNPREAEMLRFFIVRNHYRSPQN
YAPDNLVDAQNALDRLYQALQNTAADGQGVDWSEEPQAQAFKAAMDDDFNSSGAVAALFELASEANRTGSARAVGQLKAL
GAVLGLLQQDPPAYFQSPTRYSAAARGQGAPAAALDAAAIEARIAERAAAKAARDFARADAIRAELRAAGIELDDKPGGL
TQWRRA
>SEQF1086_CAE42191.1 DNA-3-methyladenine glycosylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSADIVIVKPEYWDDAVAHLMRRDRILKRIIPQHGETWLTSRGSPFVTLARAIIGQQISVKAADALWQRFLETVGKRPT
PATVLRAGVPALRAAGLSQRKAEYLVDLATHFGQRLVHPEKWAAMDDEAVIAELVAIRGIGRWTAEMFLIFNLQRPDVLP
LDDLGLLKAISLHYFSGEPVSRFEAREVSLAWQPWRTVATWYLWRSLEPAAVQY
>SEQF1086_CAE42192.1 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRNTFLEFEQPLAELENKIEQLRYVQADSAVDISDEIGRLQQKSQNLAKEIYGKLTPWQTALVARHPQRPYTLDYVREIF
TDFHELHGDRMYADDQSIVGGLARFNGSACMVIGHQKGRDTKERAARNFGMPRPEGYRKALRLMRLAEKFRLPIFTFIDT
PGAYPGIGAEERGQSEAIGRNLYAMAELKVPVICTVIGEGGSGGALAIAVGNAVLMLQYATYSVISPEGCASILWRSADK
APEAAEALAITAPRLKDLGLVDRVVNEPVGGAHRDPRVMARLLRRALGDALRQLQGLGPEQLVDQRLQRLMSYGRFQEVR
A
>SEQF1086_CAE42193.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVSEAARAYGVTAPTVRKWLGRFLAHGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE42194.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAALRALDPAPARLAVAVSGGADSAMLAVAAAAALPPGCTLRLFHVHHGLQAAADQWAAQVRGLGALLGVPVDEARVTV
PPGQGLGMEAAARLARYQALAGLARQHGVRHILLAHHRNDQAETVLLRLLRGTGLQGMAAMAPFSERDGVAYLRPWLDVD
HAAILALAGAVRAQCGWQAVQDPTNTDPRYARAAVRTQLAPALDARWPGWQAIVARHARQMAEAAEIVAEVAQADFATLE
PADAGRSFSLAAWRGLSAARQAQALRHWLASQDAPMPTEARLAELQRQLRQLHALGHDRHLRWQHAGRVVRCERGRVWID
D
>SEQF1086_CAE42195.1 aspartokinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLIVQKYGGTSMGSVERIKNVARRVAKWHAAGHKVVVVPSAMAGETNRLLSLAREISPQPDGRELDMIAATGEQASSGM
LAIALQAEGVPARSYAGWQVPVRTDSSYTKARIKSIDDKRVLADLDAGRVVIVTGFQGVDDDGHITTLGRGGSDTSAVAV
AAAIKADECLIFTDVDGVYTTDPRVVPEARRMAVVSFEEMLEMASLGSKVLQIRSVEFAGKYHVPTRVLSSLTDPLIPLE
EEMRSGTLITFEEDEKMEAAVVSGIAFSRDEAKITLLAVPDKPGIAYSILGPVAAANIDVDMIVQNQSVAGTTDFSFTVN
RNEYQRTLDLLKREVIPAVSARELVTDEKVAKVSIVGIGMRSHVGVASLMFQTLSQEGINIQMISTSEIKTSVIIDDKYM
ELAVRSLHKAFGLDQVPGDQV
>SEQF1086_CAE42196.1 transposase for IS1663 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF1086_CAE42197.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKQQHEPGIAVVVGPDEGDSFWQPVPANGFVRTLLNRANTGASVDFSAGTQTVAPGCHVREHFHDDREEVIFITEGTGTA
LIDGVEHPLAPGACLFLGKSRKHSFLNAGPEPLSFFWILMPGGLDDFFRQIGRVRQPGEPAPQSFARPADIDRIEANTVF
GWTAKS
>SEQF1086_CAE42198.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFIEERDYRIKPGKAGLFVATYEAHGLALQKKYLGRFLGYFMSEIGELNHVVAWWAYDSLDERDAARSRMLADPQWQAYL
ERVTDLIDLQQTRILKPVSFSPIQ
>SEQF1086_CAE42199.1 putative 3-hydroxyacyl-CoA dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNHVAVIGGGIIGASWAIVFARRGLEVTIVERDAACLAGLPARLAGMIERSASLLRAGEQPGDVAARIGATDALAAAVGR
ADYVQEAVSENLAFKRTLFAELDALAPGHALLASSTSTYGASQFTEALAGRARCLVAHPMTPPHLSPVVEMAASAWTDPQ
ALAGAETFMRSLGQHPVRIRKEIPGFVLNRLQGALLMEMFRVIADDVISPADADALISQGLGLRWATLGPLEGVDLNAPG
GIADYLQRYGHIFNDMAAGQGLPAPVDAELISALDGAMRAALPLERLEAKRGWRDRAIAGVRVALHDYTGEKP
>SEQF1086_CAE42200.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLIRAVDGLNRLACWLMAGLMLGMTLCTLWQVSVRFLLTGLGWNVAAPWSEEVSRYLMIWIIFLGAGVACRKAQLIALE
LVVTLLPAPLGRALRFAALLGCLVFFTLMIYLGLEFMEFGAIETSPVLSMPKTWIYLAMPVGFGLMFLNTATLIAECLLQ
GIDIRHASQQEAQE
>SEQF1086_CAE42201.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLSAVVLLLLLFAASIPVALSLGIAPLPALLARDVPLLAVPQTMFESMDSFALMAVPFFVLAGRLMQTGGIAGRLMDLGL
ALIGWVKGGLGGAAVLTTMFFSTICGSSSATTAAIGSVMIPEMERRGYPRPFAASVVASSGELGVILPPSVPMIIYAMLT
GTSVAQMFVAGILPGLLIGLSLIITILIMSRLGDYGGSQRVSVGEWALNVWRALRRASLSLLMPVIILGGIYGGLFTATE
AAVVAVAYTFVVSVFIYREIKWKDLPEIFWSSAVTSGIVLLIVGFASVFAYVLSLYQAPQQVAALLLGVSDNPLVFLLLV
NIALLVVGLFMETFAAILILAPVLAPVAVSLGIDPVHFGLIVIVNLAVGMVTPPVGVNLFLVCGIARVSMERLMRPLSVF
LGVLLLDLIIITYGPVLYARFF
>SEQF1086_CAE42202.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNVVKSLFAALALAGASFGASAEPIQINIGHALGDTSSYQVAGLHFAELMKQKVGDKVKVTLYPSGGLGGELKLVQGART
GVVDAMIIAQASLENTVREYRVLSLPYLFTDYEEANRIMQGPVGDRLLDVLPKYNMVGLGWGAVYARSLASMKPVPDLAA
MKGLKVRVIQSPGFVEAYRALGSQPTPTAYAELFLSLQNGVVDAAELSPDQTVADGFAEVIKYYSVTAAHQLPSLFIISK
AKFDRLPEDVRKAVEEAGRESMQVAVKFQDQKLAEAFDVLKQRGVQVQYPDQAPLREAARGAWDQIAKAAPGGEQFLVEI
EAARAAK
>SEQF1086_CAE42203.1 putative hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIRQRMTDFTVILPDGARLAARETGAGEAVLLVSGLGGTGAFWTPVAAGLQGRRCVVFDQRGVAGSTRGDAAVDIARLAA
DAWAVLDARGIERAHLVGHSTGGCIVQEMALSAPARAASLVLGGTWGGRNAYMQSLFAMRAALLAASPALYEQAGAYLSY
PAAWLLAHPEAVPAAAAPWPAQRVAVVRERIAALLAYDRLDDLPGLDAPALVLGARDDQIVPFALQQQLARVLPGAQLRP
LEHGGHFFPIVRGADYVAALLDWFGHHSL
>SEQF1086_CAE42204.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQAIAEHAE
GCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLDYLQAVAGRDDAEVVYESRKPVAAWRAELPGMG
IDPDTLAESRTLFSGPAREAALRFPKNLNVAATLALAGIGMTRTRVEVVVDPQARGNQHRIQVRSPLGEMQIELVNAPSP
ANPKTSWLVAHSVLATIRRHLARFTIG
>SEQF1086_CAE42205.1 probable short chain dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQRLSGRIAIVTGAGSGIGEATARLMAREGAVVVVADKAIEVAERVAQAIVAEGGRAEARQADVGEAQSVRALVDAVAA
RWERIDVLVNNAGYGIAATVVDTDEADWSALMRVNVDGVFLGCKYVIPIMQRQGAGVIVNTASAGALVGLRQRAAYCASK
GAVAALTRAMALDHATEGIRINCVAPGTIESPYFREIYARSDDPEALRASLAARQPMNRLGQPEEVARAIVFLASDDASF
ATGSTLVLDGGLTAA
>SEQF1086_CAE42206.1 probable TetR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKATPAQVPMKERIKEVATDMLIAHGSSGFRFQQIAQALDCTRGNIHYHYRHKHELVEDVTIEYCQRTIGHFDQIWLSDS
TLSQKIQLSMQFNEMRYLKRNPQGDTSHPWSLIARMRLESALITPAAREALARYSHELQRSVVAGVRRAVEKGELRPDTP
VEMVALPIIEMANSADPITRDAGRFDRLRQMYQAVDRLIHDAYGMAGHRPAP
>SEQF1086_CAE42207.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSPLPVGLAKPKALHEPSFAQLGVFHAIMITSSVSRAARLMGMTQSAASKMLRQLEDDTGLRLFERQHQRLVPTPHAQGL
QDSVEQLYGAYGVVQRQINSLADPDTGHVNVAAIPTQATTFLPQAIKRLRERYQGITVTVEILANQPIVDRVQSGQADFG
LVHDITPSVSTLNEDLGLQHVVCVAPAGHRYAGLPHVAAHDLRNETFLSYGPQTNFGAMLETAFASAGVRMPVAVEVTSS
AALLALIRAGVGVGLVEPAAIAPFGATGFVIKPFLPALPVRSRIVRSRLRPLTRHAELLLEAYRAVVLQARPDSFQA
>SEQF1086_CAE42208.1 putative extracellular solute-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKMSVPQDGWLADAAELALQSPGLTSARRRQLLGMLGAAGLASLAPMRPAAAAADRIVVYNWGGDAIKNQPLVWGKPYEK
ATGTKVEFDGTGPSFGKIRTMVESRNVAWDVCDANLAAGHSLGKRGYLEPIDYSVVDRNKVRPGFSSEFGVSHFIYSFVL
TYDKKAFGDRPPRTWADFWNTKDFPGTRILPDRVLATLEAALMADGVPADASQLYPIDERRALDKIAAIKDKTIFWKTGA
ESQQLLRQGEATMGLVWHTRATVMRREPGSTIDFTWNQGILIPAGWLVPKGNPAGRKVFDFIASTQSPESQIELLRLMGN
GPANPAANALVPPELRQDNPTDEENFRQQVVANYTWHGDNQDRIYNEYVKVITG
>SEQF1086_CAE42210.1 putative ABC transporter, permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRSLPALLVLPAAVLIGGMFLLPVLRILAISFTEPHAGLGNYAALFTEPLYLKIMATTARICAWTTLIALGLGYVLAYV
MANSSPRMRSWMIIGLLVPFWLSVLVRAFAWVLLLAREGPVNATLMALGVIDSPLALLRNETGVLIGMVHYMIPYAVLPM
LTNMLGIDRSLMAAARALGAGPVATFLRVYLPLSLPGVLAAGVLVFIFSLGFFITPALLGGGKTVMVAQYIEFGISETMN
WGISTAFAATLLVAVIMSLVLVSRVVRVPSLFGAP
>SEQF1086_CAE42211.1 putative ABC transporter, permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSVRPSWWFAAAAVVAALVLAFLFLPALVVIPVSFTDRSYLSFPAESWSWQHYRQLVDSPVWRGSLLQSVAVSAVSTLAA
TLLGAAAAIGAWRLGARLGALVRLLALLPLIVPTIVGALAYYRLYIDLGLLDTFTGVVIAHVVAAMPFVFVSVGSALANF
DPRLEQAARSMGARPWQVLWRITLPGVRSGLVSGAIFAFIVSWDELVVLLFVTTRNVYLLPRAMWDGINENVDPTIAAVA
TLMIVITFIRLCAERLLAHHRQKQELS
>SEQF1086_CAE42212.1 probable ATP-binding component of ABC transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAAATTPTPLLRVRALNKRFGAFQALRGVDFELGAGEFLTLLGPSGSGKTTTLMSIAGFVAPTSGDILYQGASITGQAP
EARGFGMVFQGYALFPHMTVEQNVRFPLAIRGVGREQARRRAQQALEQVQLGSYGARYPRQLSGGQQQRVALARALVYDL
RILLLDEPLSALDKKLRADLQWELRKLNKESGASFLYVTHDQEEALSMSDRIAIFNEGGIAQIGSPTELYERPANLFVAG
FLGRSNVLAGKVRQAGADGVAVEYEGGVLEVPKPRRQYAPGEAVSLVVRPHQMRLDAAGRQGLAAKVEAISYAGNLMNYL
LRTPRGTALFAEAVAGAGAALRQDDLVSVGLDAAAVSLLEAAD
>SEQF1086_CAE42213.1 probable NADH-dependent flavin oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNLLSPIDIAGIALRNRIAVAPMSRTQADAHGHPAAETAAYYARYARHGAGLVITEALYTAGPAARAYFNQPGLASEAQA
EHWRAAVRAVHQEGGRVIAQLQHAGKLAEPGLHARPLGLVDGAAQGLSWQTQQPNAPAHAATAEEIERIIEGFALSARLA
HYAGFDGVEIHGARGYLVNDFLSAYNVRDDEWGADRARIAEAVLRAVRQACPLPIGFNYSIYKMDEYRYQPPGGGAEIAA
LLARLCQAGADILHISSRRVLKPEPWGGLLAQLARAAAPKALMVNGGLATLQDCETVLAATQADLVSLARPFLANPDWLA
RSLAGEPLRAYEPGMEQRPLLD
>SEQF1086_CAE42215.1 putative pimeloyl-CoA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTLADNAPRMAGAGDWIDAALAPRSVAIVGASDNPEKIGGRPIKYMLQHGYQGRILPINPGRDRVQGIAAWHSLDAVNV
PIDMLLVCVAGEAAVQAVRDGARLGVRVCVVISSGFAETGEPGRQAQKHMKAAAAAAGMRLLGPNTQGLANFSNGALATF
ATLLGEVAPADGPVAVISQSGAMSMVPYAHLRAEGIGVRYSVATGNECDLNVADFTEAVLRDPEVRLILLYMESLPAPAT
LARAAALARSRQVPVLALKAGVSPQGLQAAQSHTGAIATEDKALDAWFRQHGILRVPDARSLVMGAQLLLRCGHLPGNRL
AILSNSGAACVTGADAAERHGLQVPPLPAETRARIDAVLPGFASSLNPIDLTAALLSNNHLFGQVLPILASARACDALFI
TLPMSGKGYDTDQFARDAAAFTAETGLPVVVSCPLAASRRIFAQAGLATFEHDEDALAALGQLARLSGLRETALRLARPA
PHAPAAPVPRTAGLLSEADSLEQIEAIGIRTAPWRLCLDADSMGSALGSLPGPWAVKACSAQIPHKSEYGLVHLGIADEQ
RARALFPVLRQEVLGMGKSFDGVIVASMVKPRREFMIGARWDSQFGCIVIVGDGGKYVEAMPDVATLVYPFDQAHAEECL
RKLRVAALFDGVRGENPLPVQELAHAATRLGAWLHAQQGAVASVDINPLIAGPDGRLYAADALVEI
>SEQF1086_CAE42216.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKWIASMALALCAGGAFAADYPARPITLIVPYGPGGTNDILARAIANKISPTLGQTVVVNNRPGAGGNIGAQQVATAEPD
GYTLLLASSGVFAVNKWLYRSLRYDPAQAFAPVILAGSVPNVLIVDTEVPAKTLPELVKYAKSAQPSLNYASMGTGTSGH
LCAELFKAQAGIEAEHIAYPGSAAALTALLGHQVQLMCDNLPTALPQIKAGRARALAVSSAERAPLLPDTPTVAESGFPG
FDATAWFGIAAPAGTPAPIVERLNKEINAALQAPDVARILGEQGVSFRPNTPAQFSQFISAESAKWRDVIERTGSRAD
>SEQF1086_CAE42217.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHSSLQAVLPPGANPNSTFSPAVRAGGFLYISGMTALNEQREIVGVGDIAAQARYIYQKIAAILAQAGGNLSQVVETVDY
VTTFDGYGQTADVRREVFGAGPFPAATGVLVSGLVRPAALIEIRAVAYLG
>SEQF1086_CAE42218.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQPPRQLAAADLAVGQVVAQREIRLDAQAFAQFAALTGDAHPIHYDAGYAQRQGLRAPIAHGLLLVAISALGATPLSAQL
HDAMVAMVDVEAVFMRPVYVDETVQCVYRVAQIEHVAKGRSKTTIEVSIHTTDAPPDAARQAHCVVHLTFLLKTHLQG
>SEQF1086_CAE42219.1 hypothetical protein BP1937 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQRTLDITQAMIDGYGRINGDNDIIHYDHDYAVQRGFRGTLLHGPHMTALAADLGARRYASDWLYRGKLHTKWIGPVCPG
DTFVAALNEQGEIEAVSGGKTVMVGSASLAD
>SEQF1086_CAE42220.1 hypothetical protein BP1938 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRPSDIKPREGDTPGTPYAAFVEGAALGPVSFDITPAIVQEYFEASQADPALYRVDVRQAAAPNVILPYMTVPVYQTYP
PIQGIVMAELEMSWHRPIWADETTRVTATGTILRKFEKRGRRYVQWEGRFRGADGQPIATLLNTFHVPE
>SEQF1086_CAE42221.1 putative ArsR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAINTEDILKALAHPARRNILAWLKEPQRHFPQQEHPLELGVCAGQFERCGLSQSTVSTHLAILQRAGLIHSRRVGQWVF
YQRNEACIAEFLQTMQAEL
>SEQF1086_CAE42222.1 N-ethylmaleimide reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTLFQPLNAGKLRLANRIVMAPLTRNRSPNAVPPPLTATYYAQRASAGLIITEATAISHQGQGYADVPGLYAPEQLAGW
RRVTDAVHAAGGTIVVQLWHVGRISHTTLQPGQGAPVAPSAIRAQARTYLVDAQGKGQFADTSEPRALALDELPGIVEDY
RRAARAAIDHGFDGVELHAANGYLLDQFLRSGSNHRDDAYGGSIENRARLLLRALDAVCAEVGADRVGIRLSPVTPANDA
HDDQPQPLFEYVLRELARRGLAYVHVIEGATGGDRAYQQGPAPFDYAALKAAYRAAGGAGAWMVNNGYDISLAEQKLSSG
QADLVAFGKPFIANPDLVARLRQGAALNEGDRDTFYGGGERGYTDYPALA
>SEQF1086_CAE42223.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHQHGVADGLLYGCWYRIVRPLLVILTWVAFSLYIHHSLVTVGGTAAQIAELLVYITVVATMAAALTAWMIVCRFHGWIR
ARDNEEVGVGLDPEYALPPRWPLPEGANRLLVDHDEAGAIVQVSAWYVPAAIEPVVAAAMASAVMPEAAPLSEPAPVAAA
LPDEADELAAWSGPPMQRQPDGRIEPTLHDGRALTL
>SEQF1086_CAE42224.1 putative glycosyl transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNDSVKSVLSSFVFYYPFFMSYFWIVGGLLHFFLFEQGRKHRATLLPRVPRVAIVVPCYNEGENVAEVIAHLDRMHYPNY
RIIAVNDGSRDNTGALLNELAEQYPRLLVVHQSRNEGKAIGLNTAAQLSDAEFLLCIDGDSLPHPDSITYMLTHFLHAGH
VGAVTGNPRIRNRSTVLGRMQVGEFSSIVGLIKRTQQLYGKLMTVSGVMTMFRKQALHQVGYWSPDMQTEDIDISWKLQL
AGWTLRYEPRALTWILMPETFRGLFKQRYRWARGGIETALKYAPRMLNPRQILMWPIFLEFSLSVLWAYAMLFLICMAVL
GQFVALPPAWQFEIFPRWHGTLLFLTCLAQLFAGCIVDRAYDYRIFRYFADAVWYPIAFWIIGMITTVFALPRVLFRRAQ
SRARWVSPDRGIKHESVDH
>SEQF1086_CAE42225.1 putative hemin storage protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAMHRTLLKWFACCALGLLMLPARAYKVDMLPPPDPDDGLTFRVLCMHDVRDNLRASFADMPDQFAIETRTLTDLFEWI
RVKGFNLISMQQIIDSRAGVRPLPPRPILLTFDDGYASTYTKVFPLLKKFNYPAVVAVVTSWTDAPAGTKIRLSPKIEVP
HDFFMTWAQLREMAQSGLVELASHSHNLHRGVLANPQGNEQPAASSRQYLPASGRYENDAEYRARVRQDLKTSADLIREH
TGVTIRSIVWPYGAHNRDTDQVAAEVGLNIGLTLQPGPNTPDVSLTQIRRSLVDYEVNVATVARAMREPVSYHGQVRPIE
RIVQVDLDYIYDPDPEQQNRNLGQLIDRMKDLAPSAVYLQAFAYPKGDGDITEVYFPNRHLPMRADLFNRVAWQLKTRAG
VMVYAWLPVLTFSVPPGNPAYGKVVQSTTRKPGERGLGSPTRLSPFHPDAHRVISEIYEDLAKAAHFDGLLFHDDAVLDD
TEDSSPEALATYQGWGLPPDIAAIRADPKLAQQWSKGKIRYLIDFTMHLRHIVSGYQNDRDMVVARNLYAQPVLDPVSEA
WYGQSLPEFLKSYDFVALMAMPNMEGAARPEQWMRQLVAAVARQKGLDRTIFELQARDWRVGKPIDTEILRKQMVQLRSL
GAINYGYYPDDFIANHPDAEVLRDVMSLKSTLEKRRLTKAQELSRQTTLYGSASQAEPTQR
>SEQF1086_CAE42226.1 putative hemin storage protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNNDQTRRTRPASVRGLRRTRLLVAGLAFVGAAAAAAPSVRDQVQEASRSGAANLALDLATEHRALFTPLEYAQLQHAAI
AQRLRWSRAETWNLTGPERFATLDAALADGWQLLDSLPLAPEYASLRTAVISDMIYGLGLRGRYADAIKLYEGLRATNTP
VHPYVLVSAGNAYAYEERYDEAIVCYEEALAKAGPGDIDRVPTQESLFFAYMDRGRYEDAEQLLQRIEKTSPQYVENAPV
AERPNEDYATAQRLRAQYLMYSGETEAGTLAIDALQHDAPFSSGLRNAAASARLGDARPREAKAAFTTALAERPDDIQAM
TGLARASMALREYPEAEAIVTTLSERFPESSSVRNLQRDYEVYQSPLLTMDFGGDIGHGGDNSNNDNSTIANREWSLNTM
LYTSPISHNYRLFFHQFTGYADLGDGHKSRVRNGAGLEYRRGSIEASTELHQSTGPSGRFGASANVAWLPSDGWRLAANF
DSDSNDLPWKAYRAGIHGWSSGVSARYQPTERTYYDVAYQLQHYSDSNTRQTIGATWFQNLWTVPRHSVSTWTSVAYSNN
SKTDTECFSPDHDLTAQVTAMYEWRPWRDGQYAFRQRVYATGGVYNQAEHGNSALWQLRLEQVWDLPRQTSITYGVGYGR
HSYDGDPENRTLFYLTLNIPF
>SEQF1086_CAE42227.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRAAKWWGPAATWTLAALLVLLVGHGVVPEAARVSDAPLLHAMAGHAYLLNWAAGLMALIGWGDSLVLYRRTRRRAV
>SEQF1086_CAE42228.1 MarR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPASQDKPDVPPGPYHFSEQVGHLLRRAYQRHVAIFQQTIPDSKLTAAQFVVLCALRDQGACSLVDVVKATAIDQATVRG
VIERLKARKLLAVSHDPADRRKVLVTLTPDGRALVEEMVPFAEQITQSTFGGLNPAERVAIVYLLRKMSDADDLVGRQSE
S
>SEQF1086_CAE42229.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE42230.1 branched-chain amino acid-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNGRNRYARLLGATCLTLLGASAWAQDTIKIGEINSYKSQPAFLEPYKKGMQLALDEVNDAGGIAGKKLELVIRDDNANP
GEAVRAAEELISRERVDMLTGSFLSHIGLALTDFAKQKKVFFLASEPLTDKIVWQDGNRYTYRLRTSTYMQVAMLVPEAL
KLKKKRWAIVYPNYEYGQSAVATFKTLMKAGQPDIEFVSEQAAPLGKVDAGSVVQALADSKPDAIFNVLFAADVTKFVRE
GTTRGLFKDRPVVSVLTGEPEYLDTFRDETPAGWIVTGYPWQFIETPEHQAFLKAYQAKFKDYPRLGSVVGYSAIKSLAE
GIKRAGGKTDTESMIKAFAGLKLTIPFGPIEYRTLDNQSTMGAYVGKLASKDGKGVMVDFRYVDGAAAQPSDEEVRKLRK
AD
>SEQF1086_CAE42231.1 putative permease component of branched-chain amino acid transport system [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDLTGFLAQLLNGLAEASSLFLVAAGLSLIFGVTRIVNFAHGSLYMLGVYVAYSIVERVGGTALGFWFGLVAASLAVGVV
GAAIEVVLLRRIYRAPELFQLLATFALVLVINDAALWIWGAEDLLGRRAPGLTGAIDLLGRRYPVYNLVLIVVGPVVLGL
LWLLLTRTRWGTLVRAATQDREMLGALGVNQAWLFTGVFALGAMLAGLGGALQLPREPASLSLDLRTIGDAFVIVVVGGM
GSIPGAYVAALIIAEIKALCIGLGTVTLLGLSISFSKLTLVVEFAFMALVLVFRPWGLFGRPQGASRNSAPIEAPLRPAA
PRLRILWGVLLASLAVLPLLAQWLPYAVVLTQDILIAVLFAVSLHFMMGPGGMHSFGHAAYFGLGAYGAALLLKAASLPM
EAALAFAPLVGALGALVFGWFCVRLSGVYLAMLTLAFSQIVWSVVFQWDDFTGGSNGMIGVWPAEWLSGTAYYYLALAVV
AAAVLGLRRVLFSPFGYAMRAGRDSSLRADAIGIDVKRVQWAAFVVAGAFGGLAGALYAFSKGSISPDTMAVSKSVDGLV
MVLLGGIQTLIGPVVGATAFNVLQDYIMRATEYWRALFGGVILLLVLVFPQGIAGFCRQAGQWWSARAGKDRPPRKGGAF
IGGPREKQA
>SEQF1086_CAE42232.1 putative ATP-binding component of branched-chain amino acid ABC transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLLQVRNLSKAFGGVRAVDDISFDLAAGELLALIGPNGAGKSTTFNMVGGQLPATTGSVRLDGHELVGMRPRDIWRLGV
GRTFQIAATFASLTVVENVQMALLSHHRRIFSFGSLAARQYREPALALLEQVGMRDQAERPCSELAYGDVKRVELAMGLA
NDPKLLLMDEPTAGMAPQERNALMALTKRLVVDRGMAVLFTEHSMDVVFAYADRMIVLARDRLIAEGGAQEIRNHPKVQE
VYFGTGKTFEKHSAGAAA
>SEQF1086_CAE42233.1 putative ATP-binding component of ABC transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTVAEPTRAAAATQAPALLRVAGLNAWYGAAHILFDVDLEVRRGEVVALMGRNGAGKSTTFKAVMGLLAKRRGAVEFMG
RDIAGLQPFEIARLGLGFVPEDRRVFTDLTVTENLEVGRQPARRWPDGSAAPNWQPGALYELFPNLGAMQDCPGGQMSGG
EQQMLTVARTLMGNPFLVLLDEPSEGVAPVIVEQMAGMILALKAQGASILLSEQNVHFAELVSDRVYVLEKGQIRYSGSM
AELADNEEVRRAYLTV
>SEQF1086_CAE42235.1 probable oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPRRIEVCRIAMLAATRDFTLEVNASRHTVTADPDTPLLYILRNDLCLNGPKFGCGLGECGACAVLIDGVAARACTIPVR
GAAGHAITTLEGLGTPQAPGPVQQAFIDEQAAQCGYCLNGMIIATQALLLRNAAPTDEEIRHELQYHLCRCGTHIEIMAA
VRRAARLWAARQA
>SEQF1086_CAE42236.1 putative monooxygenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQGKPRIAVIGAGLGGTAGAALMARAGFNVRLYEQAPAFSLLGAGIHLGPNVMKIMRRIGIEDELNRQGSHPDYWYSRDW
QTGAELARIPLGDYAVSHYGATYLTVHRGDFHALMTAALPAGLLQFNKRLTRVDEDDDVVRLHFADGSVEEAEIVIGADG
VNSRLREHLLGAELPKYTGYVAHRAVFPTPLDSGSLPFDMCVKWWSDDRHMMVYFVTGKRDEIYYVTGVPEQQWDMGKSW
VPSSKEEMRAAFAGWHPTVQALIEATPEVSKWPLLERDPLPLWSRGRIVLLGDACHPMKPHMAQGAAMAIEDAAMLTRIF
EQTGLQDHAAAFRLYEDNRAERASRVQRVSHDNTWLRTNENPDWCFGYDVYAEPLVEGRRAAA
>SEQF1086_CAE42237.1 maleate cis-trans isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQKTYRIGQIVPSSNTTMETEIPAMLLARQQIRGERFTFHSSRMRMKKVVKEELAAMDAESDRCAVELSDARVDVLGYAC
LVAIMAMGRGYHRQSQARLTAHTAANGGEAPVITSAGALVDALKVMGARKIAVVAPYMKPLTELVVDYIGNEGYEVVDYR
ALEIADNLEVGRHDAGRLPEIVAGLDYREADVIVLSACVQMPSLGAIAKVEAQTGKPVVTAAVATTYAMLKALGLEAVVP
GAGALLSGAY
>SEQF1086_CAE42239.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPVSDYEMIRAWTQVLRLSRLQAGQTVTVLTSAATHPQTLGTALVAAQSLGAVVNRLDLPPVNGEKALSRDALAYLGTTP
LTGNKAAIAMLKASDLVLDLMTLLFSPEQHEILQGGTRILLAVEPPEVLARLVPTEGDRQRVKAAAARIAGAREMTVESE
AGTRLRCGLGEFPAISEYGYVDEPGRWDHWPSGFALTWPDEGSANGTIVIDRGDILLPQKSYVSEPIVLTVENGYATRIE
GGLDAEMLREYVATFKDPQAYAISHIGWGLQPRASWTTLGLYDREATIGMDARAYEGNFLFSLGPNNEAGGSRTTACHID
IPLRRCTVRLDGREVVREGKVLD
>SEQF1086_CAE42240.1 putative isochorismatase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNDLGSYERQGFGAALPLKAPYGLLIVDFVNGFADPAQFGGGNIAAAIETTRTVLAAARERGWAVAHSRIVYADDDADG
NIFSIKVPGMLTLKEHAPASAIVPQLAPQAGEYVVRKSTPSAFYGTMLAAWLAQRGVQTLLVAGATTSGCVRASVVDAMS
AGFRPLVLSDCVGDRALGPHEANLFDMRQKYAAVMTHDEALAKTK
>SEQF1086_CAE42241.1 transposase for IS1663 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF1086_CAE42243.1 putative flavocytochrome [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRLRTIFILLVAALSVLWLSQNPPGAWGEGFWVMRKPLIYYTGILALGMMSLGVILAARPARFEGALGGLDKFYRLHKW
LGLGGVALALTHWLLKIVPPWMAAQGWTVRPPRVPAPAGQAALYDPFQAWHGVAKSLGEWGLYALLLLAALALYKRFPYR
HFFRTHRLMPALYLVFVFHAVVLMAPAYWRGPIGPVMAVVMAAGGAGALLSLLGLIGRPRQAAGRIARLERFADNAVMQV
DVQLETRWPGHKAGQFAFVAFDRAEGAHPFTISSAWRDDGLLRFSIKGLGDYTRSLPARLRVGDGVTVEGPYGRFDFRAN
GRPQILVAGGIGITPFLARLQDMAAARSDGAPAHEVDLVYSTNAPDPDFIGELRALAERARVGLHVLVTQRDGKLSAERL
VDMLPRAAQSEVWFCGPAGFGQALREGLAARGMPPACFHQELFEMR
>SEQF1086_CAE42244.1 putative ferrisiderophore receptor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHTRTPQRQRPVAPRLLHLSLAASLAAGAAQAQTATEATTLPTVQVTGRGETATGPVDGYAATRSATATKTDTPLSETPQ
AVTVIPREQIIDQGAQNVQDTMNYAAGVRPNAYGVDNRGDYVRVRGVEPVQYLDGLKQFFNYNNPRTEVYGLERVEVLRG
PASMLYGQGSTGGVVNLVSKRPQPEAMREIGVTVGNHNRKEIQADLTGPLTEDGTWLYQVVALGRDSDTQVQYTKDDRMM
LAPSLTWQPSAATSLTLQAYWQKDKSGTTQAFLPWSGTVSGNPNGRIPTRRFTSEPGFDRYDTEQFSVGWQFEHKFNDNW
KVRQNLRHTSSKVDYSTLYPAVYGNPDNPFIDADQRVVNRYLYIKNPRMRSLLADQNLEGKVNWGRAEHTLLMGVDYSRY
RETGETGSGFGAPLDLYQPVYGTLPDYAMSDVPKNKQQQIGVYLQDQIKFDRNWIVVAGLRHDRVANSVEGADKETDNAT
TKRLGLMYAADNGWSPYLSYSESFTPIAGTDNSGNRWVPMRGKQWEAGLKYMPQDTGYEATLAAYDLRERNRQTNDPSDP
TNQVQTGKTKTRGIELEFRGRVTPQMDVIANYNYTDIDPQLEGLPKHTFSLWSKYRFSVGDVHGFAAGAGVRYLNAFRDG
SAPETGSVALFDAMLSYDTGSWRYALNVANIADKTYEVVCLRRGDCFYGQRRTVTLSAMYRF
>SEQF1086_CAE42246.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFKSMLAAVLALGMSGPVAQAAAPLDGPLTIVVGYAPGGSSDRIARLVAERLKDRVGVPVIVENKTGAGGRIAAQALRQA
SAQQNVLMLANPAVMVVAPLVYAQPGYDAQRDFQPLSLASRYKFALTVPAGSPLRTLADLRQWIAAHPKQLTVGVPATGS
LPHFFALMLGREVGEDVEVVGYRGSGPLITELIGGILGQGIDTLDTLLPQHQAGKLRILATSGQTRDAQLPDVPTFREAG
VDLAADGWNAFFAPAAMPADKVERLGRDIAAVMSEPAMQQAVRAVNLEPVAQDAAQTAASLQAYRDQWEPVVRQSGFTAT
Q
>SEQF1086_CAE42249.1 putative LuxR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRMTTVLIEDYALLRIAIQHVLEHGRGAGQVRALASAELEAVASSVERPPELAILGCSGVSEHDQLMLTRVIATLAPRNM
LLLYLELDLAVLTAAARAGVAGYVAKSLSPDALGAAISLVMAGGQCYPLPVQASATPVRGAMQLTQRQEQILRLMVQGKT
MREISREVGTSVATVKSHARTLYWKLNARNQAAAAYAAVSLGLVPGLREDKDTGPADPPA
>SEQF1086_CAE42250.1 phosphoglucomutase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDTPTMHGSFDWDGSRTGAGVFGPYDIRGRTGEEIDAGFAHALGLTLGRRAVATHAGAVVVGRDATLSSVALAAALQAGI
RAAGTHVIDIGRVTTPMMYYATRLTETGAGVAVTGRRDGQAHSSFKIMMHGAALYGAGLGELREAMIEADGAVDAAESPG
ARRQLAVLPCYQARLLSDIRLRRPLKVALDCGHGVTSLYAPDLLRELGCEVTALFADGDPGPADHPANPGDPRNLQDLIY
CLRYSDCEVGLAFDGDGDRLAVVSKSGEIIWADRLLVLLARDVLARRPGASVIYDVKCGRLAPRGIEQAGGEPLIWKSGP
GQIKARMQETGALLAGEMSGRLYFKDRWYGFDDAIYAAARVLELLSGVADATALLTQAPASFTAPETRVALPEADLQAIL
AAMQVRGGFPGARRITYLDGVRVDYDDGFGLVRQACGAAVLALRFEGDTAAALARIQAEFRRELARIASHLSITF
>SEQF1086_CAE42251.1 putative glucose-6-phosphate isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPENAQPHAVIPAADLQLSAQSPQWRVFAAAAAGAPLVARPLRVIEAAGIYVDLSMQRHSSALAQAGLALLQARDVLGAR
AALFAPGAQDAAHGRYPVLRAGYGAHPEEQCDIEVEIEYARMLEFVRELDRGGAYPAVLYLGGGAGQWALRLALQAFGGP
AQRRQLRLVSGGDAAALHEALAGLDPRRTLVVAASRGFEPSETLDNARAAIDWLRRAGIDDVSAHLVAVTGNESAARALG
VAAARVFRLPSWLQPRHELWSVGALPVALALGVDMLKALRSGAAAMDQHFLQAASAVNAPMQMALAAVANTSAMHWPTHA
LAVYSARLAALPACVQQLEMTLAGRAPASLPAYPVVWSPAGAPGPGAFFEWLHRAPAGAPVDFIAGLDEYPASPPAHRAL
LANCLAQREALLRGLPAGPGQPAAGGGRPSTLVVLRQVDPRAVGALLALYEHKAFVQAALWGAALGGADEAQACQRLAQD
IARQLAVPPEAGPVDWGHDSSTAFWIDRYREQGGAGAAAGRTA
>SEQF1086_CAE42252.1 serine acetyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGSSHYPVANWNLDGIVSGLRGARQEWRGPRGRLREESESGVREFPSQESLRDIMRQLFGALFPMRLGPIDLREEVEDF
YVGHTIGAALDALLHQVCLELQHLGRDDPQPYGQVLERAVDIVRRFGAELPAVRKALDLDVTAAYQGDPAARSVDEVLLC
YPGVTAMIHHRLANVLYRLGAPMLARIVAEIAHSDTGIDIHPGATIGRSFFIDHGTGVVIGETAIIGERVRLYQMVTLGA
KRFPPGENGELKKGLPRHPIIEDDVVIYAGATILGRITIGQGSTIGGNVWLTHSVPPNSTVTQAGVINDMPDCGLGG
>SEQF1086_CAE42253.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKSDSHPVNPAPPLWPIILAAGIVLGLSLGQRHSVGLYQLPLVQSFGLTRETFSFAIAIQNIVWGLAQPFSGYLADRYGT
ARVVAGGALLYVAGLLLTTVSDGRLSLTLSAGVLVGLGLAGTAWTVNGVVGRRAPAARRSAALGAVSAMGALGQFVMLPL
GMYLIGAFGWQGALGLCAAVLACMAPLAWLLREAPRQPSAAPAAPATQSGGGVRAALGNRDLWLLWLGFMACGFHLAFIA
THLPAYLADKGIGGGTAALALGLVGLFNIAGTFFFGLMGERYPKKYVLAFLYLVRTAVITVYFLAPVSQFSTLLFASAMG
FLWLGTAPVTTGLVAQLFGLGTLSTLFGVVFLGHQVGSFLGVWLGGVIFDLSGSYDAVWLLSIAIGLFSAAMHLPVREPA
RRLAAAAP
>SEQF1086_CAE42254.1 putative Sir2-like regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDSRMSDLQALRGFLGGSERLFVLTGAGCSTASGIPDYRDGQGQWKRKPPIDFQAFMGGQPARARYWARSMVGWRHFGQA
RPNAAHHALARLAQRGQVDLLVTQNVDRLHQAAGGREVLDLHGRLDEVRCMQCDWRGPRGPWQHTLELANPQWAALQAGA
APDGNADLEGQDFSRFVVPSCPRCGGIVKPDVVFFGETVPRERVQRAYAALEHADAVLVVGSSLMLYSGYRFVQAAARAG
LPIAAINLGRTRADDMLALKVSRPCDEVLAEVVP
>SEQF1086_CAE42255.1 putative inositol monophosphatase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRTFSRDETRRIAALLAEAARSEVLPRFRHLTEDAVRGKSSPRDLVTIADEEAERHIAARLGKLYPGAVLIGEEASARN
PALLNMLVDADLAFLIDPIDGTRNYVAGLPLFGMMVAVCHRGDVLAGVIYDPIGHDAALAVRGEGAWINYEDGTQQALHV
AGAAPANEMDGMISTSNLPDGLREQVTANQARLGSTASLRCAAHEYRLAASGHCHVLLYNKLTPWDHAAGWLLHREAGGY
SAHFDGSPYKPTHRSGGLLYAPDGGTWHAAHQALLGDAVPLAV
>SEQF1086_CAE42256.1 succinate-semialdehyde dehydrogenase [NADP+] [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQLTQPLSRAELLRDACYIDGKWVGAGNGPSIPVDNPSTGKTIISVPKLGRKEAEQAIDAAEAALPAWSARTGKERAAI
LLKWAQLMMENQQDLAVIMTSEQGKPVPEAAGEIAYAASFLEWFAEEAKRIDGDILQSPKGGQRLMVLKQPIGVTAAITP
WNFPAAMITRKVGPALAAGCTMVVKPAQQTPLTALALAVLAVLAGVPAGVFQVVTGSSREIGAALCESEVVRKLSFTGST
EVGRTLMEQCAPTIKKLSLELGGNAPFIVFDDADLDRAIDGILASKYRNAGQTCVCANRIYVQAGVYEEVAKRLVEKVNA
MKVGDGFEQGVTQGPLIDTAAVAKVQEHIADATAHGAKVIAGGEPHALGGSFFQPTVVRDVTQSMRFAVEETFGPVAPLF
KFDSEDEVIGMANNTIFGLAAYFYTRDYARIWRVSEALEYGIVGINTGIISNEVGPFGGVKQSGLGREGSKYGIEDYLEL
KYLCVDLGA
>SEQF1086_CAE42257.1 4-aminobutyrate aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKNRDLNTRRTLATPRGVGVMCDFYAVRAENSTLWDAEGKEYIDFAGGIAVLNTGHRHPKVKAAIAAQLDNFTHTAYQIV
PYEGYVSLAERINAVAPIEGLKKTAFFTTGVEAVENAVKIARAYTGRSGVVAFSGAFHGRTMMGMALTGKVAPYKLAFGP
MPGDVFHVPFPNATQAISVADSLKALDLLFKVDIDPKRVAAIIIEPVQGEGGFNVTPPELMQALRKVCDEHGILLIADEV
QTGFARTGKLFAMQHHSVQADLITMAKSLGGGMPISGVVGRAEVMDGPAAGGLGGTYAGNPLAVAAAHAVLDVIAEEKLC
ERAVELGKRLMDRLEGLRAKCPAIADVRGLGSMVALELNDPATGKPDAEAVKRIQQQAIERGLILLSCGVYGNVLRFLYP
LTIPDDQFARALDILAEIIAA
>SEQF1086_CAE42259.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNILIGTASWTDPTLLACGRFYPAAARTPQARLQYYATRFGMAEIDASFYALPDPHTAYLWAQRTPPGFVFNIKAFRLFT
GHQTPRAALPADLRREVPGEGDAVFDDQVPGAVRDELWRRYVQALEPLRQAGKLGAVHCQFAPWVRREARGVARVRDCAA
RLRDAGGLVMAAEMRHASWFDSAAASNWTLALERELELVHTVVDSPQGFANSVPPVWARTHPELALVRLHGRNAGAWNNR
AAASSSRFQYEYSPQELAELAERVRRLAERARQTHAVFNTNYEDQGMRNAAGLAAALAP
>SEQF1086_CAE42260.1 probable ATP-dependent DNA helicase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSEPVSRAPAPADDPLAELNPAQREAAAYGVDAPASQALLVIAGAGSGKTNTLAHRVAHLILHGADPQRMLLLTFSRRAA
QEMERRVGGVLQRVMGLRAGHAAPALPWAGTFHSVGARLLRDCAPRIGLSEAFTVHDRGDAEDLMGIVRHELGLSATHNR
FPLKGTCLAIYSRVVNSQAPLAEVLRQAFPWCEAWEAELKRLFQAYVLAKQEQNVLDYDDLLLYWAEMMRDAGLAADVGA
RFDHILVDEYQDTNRLQAAILLAMKPDGGGLTVVGDDAQSIYSFRAASVRNILDFPQQFPGGAKVVTLERNYRSTQPILD
ASNAVIGLAAERYAKALWTDRASSQRPELVSVSDEAGQARWVADQVLAQREGGATLKSQAALFRASSHSAALELELTRRN
IPFVKFGGLRFLEAAHVKDMLSVLRWAENPRSRLAGFRVAQLVPGIGPATAGKLMDAMAQAADPLAAMREFQPGAAARQQ
WSEFVATYATLREARRPWPADVDAALQWYGPQLERIFDDARVRRADLEQLARLAGGYPTRERFLTELTLDPPDATSDESG
PPLRDEDYMILSTIHSAKGQEWKSVYILNAVDGCMPSDMATGTAEEIEEERRLLYVAMTRARERLQVVVPQRFYVHQQAG
LGDRHVYGSRTRFISEAMLPLFEHLPKPPELPFDRARPIEPAAPRIDVVSRVRGLFS
>SEQF1086_CAE42262.1 putative nuclease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLRNKLQPRGGRRGLAGLLSALLLAALAALANWLWPQDHPQAPPARQTPAAGAGGVPAGSYALTGPIVNVADGDTVTLRA
PGGQRRIRMDSIDAPEEGHGNEQPGQPFAQASRQHLAGLVAGKTLTAQCYERDQFDRDVCALILPDGRSANRAQVEAGYA
WAYTARRGDYLRDPAMPGLQRQAREAGRGLWAQSGAIEPWKWRYDCWRQRRC
>SEQF1086_CAE42263.1 putative extracellular solute-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTGMSRLLRIAALLLLGAMAGCSRESPINSPYPAGAMADNALYTAFVKRSPKYLDPASSYSTDETPYTYNIYEPLYGYHY
LKRPYELVPRAAAAIDAPRYLDAQGRELPADAPGAQIAESVYDIRLRPGIRFQPHPAFARRADGGYQYFPLAEDELADKF
YIPDFPATGSRELVADDYVYALRRLASPRVVSPIYSLMADHIVGMKDYGDRLRARDQALRRDLPGGARTLPWLDLREADG
FAGVQALDAHTLRIRVIGKYPQFKYWLAMTFTAPVPWEADRFYSQPGMAEHDLSLNTWPVGTGPYMLVESRQNWRHVLAR
NPNFRGAPYPCEGEPQDRADGLLADCGKPTPFIDRVVFSVEKEAVPLTGKFMQGYYDVPQVERGEYGVSMLVAAGDSPDK
AALYRYHGIRLPTTVETSNWYMGFNWLDPVVGKGDTPAQQERNRKLRQAISIAFDWEEYVAVFENSQAQVAYGPVPPGVL
GYKPPPEGYNPVVYDLADGKPVRKPLDTARRLLAEAGYPDGRNALTGAPLVLYYDAMTGAGASPMFDWMRRQLAKLGIQM
DVRSTDYNRFQDKMRRGTAQLFLWGWNADYPDAENFLFLLYGPNAKASSGGENAANYANAEFDHLFEQMKLLDDGPEKEA
LIARMTAIVQRDAPWMFGYFPMSGGAYQQWVGNAKPTQMVRNTLQFMKIDPATRVARIDEWNRPLWWPLGVLVLLLALVI
WPSYRALKRRERQTVYGARAAASTPEQQP
>SEQF1086_CAE42264.1 putative oligopeptide transport system permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTGYVIRRLLYGVLILIGVNLFTFVLFFAINTPDDMARLAIGGQRVSQDAIEKWKTERGYDKPLFLNTRAEGAARYTDTV
FYQRSVPLLAMDFGASDGGRDIGREIRTRMGPSLALALPTFVLGLFASVVFSLTLVYFRATRLDFWGVVLCVVLLSISSL
FYIIAGQWLFSKLLRLAPYSGFADGLDMVKFLAVPVVVAIIARLGPEARFYRTLFLEEIGKDYVRTARAKGLSESVVLFR
HVLRNAMLPILTGTVSAIPLLFMGSLIAESFFGIPGLGSYTIDAINAQDFSIVRAMVFLGSALYIVGLIFADISYTLADP
RVRFE
>SEQF1086_CAE42265.1 putative oligopeptide transport integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPLFVFLWTDIALYLLVAAVLAYAWRVRRSPTLRATWGRVARDAPAMCSAVVLMCFVVVGLLDSFHYRARLAPAPGVTAD
APPAYAPVVRSALDGLLATTVLARPEKTYSEPLAVRQFTKETLLIDGKPQRDFPLLRSGGAHLQDPDAQRWPDLRQRFWT
GLGLGAAAALAGGLLLVLALARRRASLRAALADLAANRTELPWRAMWITYAIICLLALTVSMLAGGYHVLGTDRTGNDVL
WQALKSVRTALIIGSLTTLAMLPPALAFGIAAGYFKGKADDAIQYLYTTLTSIPSVLLVAACALMMQVYIDNHAELFDTS
AARADLRLFLLCMILGLTGWAGLCRLLRAETLKLRELEYVQAARAFGVSHWRIMTRHLLPNVMHIVLITVVLEFSGLVLY
EAVLLYLGIGVDPSMNSFGSMIDSARLEMSRDPMIWWNLLAAFGFMLALVLAANLFADAVRDAFDPRTRRFRPARAAAAG
ALP
>SEQF1086_CAE42266.1 putative ABC transporter, ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTASAPLLRIEGLDVDVAGESGVTHAVKRLQLAVAQGETFALVGESGSGKSMTALALLRLLPDAGRIVGGQIELGGTDLN
DLSERAMRGVRGGRIGIIFQEPATSLNPVMRVGDQIVETLAAHTPLRGAAARERAIDWLRRVGIPEPERRIDDYPFQFSG
GQKQRLMIAIALAAEPKLLIADEPTTALDVTVQAQVLELLAGIQREMGMAVLLITHDLAVVRNVAHHVALMRGGEIVESA
DARTFFERPRHPYARELFEAIPTFAKRGRPLSAQGRAADQGKAAPEAGAVVLDVQDLLVHYPVRKGVLRRVAAWVEAVNG
VTFTLRAGETLALLGESGCGKTTTGKALLRLVEGARVQGRAMLDGHDLLGASRRELRRLRQDIQIVFQDPFASLDPRMRV
GDILEEGIASLRPELAASARRARAVGLLERVGLPADTPTRYPHEFSGGQRQRIAIARALAVEPKVLICDEPTSALDVSVQ
AQILDLLRDLQAELGIAYLFITHNFGVVEYLADRIAVMHGGRIVEMGPADTVLHAPRHEMTQRLLAAVPRLRFGAENE
>SEQF1086_CAE42267.1 probable MarR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLDIDRISQQDQRVSSGDPLGHDRRPDSVEEIAQVLARQLTVYMAASQAAMAERLGLSLTELKALDLVLEFDALPTGQLG
QLLGISWGGATALINRLEAAGYVQRGRHPLDRRVIVIRPVAERCRALAEERRAAAEEVTFLSRQYDAHQLATVHAFLTQY
ARSLRHETLMWLQSRHGRDFVND
>SEQF1086_CAE42269.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRTIATDLFCCSLVAGLAALPAASRADGPLRGNPVDALPQLERPTAPAAPAPALQAPTPEQRAVQARLAQRIVPRNFDV
AGVHALPFDQVAAFLTPLAGKEITVAQLVQQVDRITELYRSSGYPLSFALVQNQDFANGLVVVTVVEGHIGNVRIDGDIG
NAKRRLETLAGPLLAEKPLTQATLERQLNLMRIVPGVKITPSLDLPRRADGATELVIAATHGKFTSNGGVADLGTGMQPL
VDLGAHSLTPLGEQLKLTTSIPLNSDDVKYVAGEARLPIGADGFSIKVDGYHYQAKPQDDAIEYLGFDRKVTNDRIGVGV
SYPFLLNNQRSLTGTLGMYAVNAKDRYTHRDSDRWLQQDTRVRAATAELRYIDILPQRSTDLTVSVSKGFDAMGAKKSID
TNYGYSAIPDVDLDFTRFNLNVRQAFTLPAQFGLVLSGAGQYSSDILPSSEQVSFGSWRFAMGYPQGEQSGDKGVGVSAE
VNRRFGLGWRYLSAVQPYAMADYARTWYNNKGLQELNERHLSSLSLGVRFTDDKFYLFDFNVAKPVGSSTVNGDRDVRFN
ANYSLFYDAL
>SEQF1086_CAE42270.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNPGDIVPLSLQPHVVALSFLIAFFGSYVALVAAARIRASVHDGVNVRGFVLIAAVSMGGIGIWGMHFIGMQAQRMPFEV
GYALWLTLLSAAVAVAFSGMAFWYVGRQAFSLGRCVVAGVLAGLGVAAMHYIGIGAMRMPAMFLWNVELVALSVAVAVVS
AIVALWLAFNVQREWQRVAAAAVMALAVCGMHYTGAAAGVVVCTTAQTFADAQVGGVALPYVAFAGALAVLLAMRWQLHR
SYRGHQDRTARRIDALLRETTTGRPVRGHPGR
>SEQF1086_CAE42271.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLTQLKNFWRDEEGATAIEYGLIVGLIAVVIIGSVSLLGETLKGFFDTIQTELSAEAP
>SEQF1086_CAE42272.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MENLLREHVWWAVYVAFNLLVVFYDLRVRRVPNRLLIAAALAQCAWLAWHAWGVQATPAAGARGWSDAGLGFVLGMAFVM
LWRMRLMGAGDVKYLAVLGLAIGAWPWLLVLVLAGLPSLAHALAQGFQVVRDPRRPRRGIPYAAYLALAAISLALMPSSS
PWCSWCSSWFFTAV
>SEQF1086_CAE42273.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFVVFFVVLYGGLTWAFIFAAQQSLNHAAEEGARAALQWPGSTALEPRAARAGQLAGQYADWVRRMGGAPATVTVCGSGG
PIGGLAAGPCSGIALAADQIEVLVRYPYAQAPLVPLLPGMGVAVPGTLSARASVRVGGPVAAAGEGA
>SEQF1086_CAE42274.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRAISFPSRRRAQRGAAAVEFALVILLMLALMLGVLGYGALFWAQQKLSKAAGEGAQALLQANLRGAAASGVAGCEAARQ
EAGWLAIECVSETLDCAWTASDGGPAACAQVRVRYELAGWPLLATLRGAAGAVPGARAWFPDVLSAQAIVQIAQEPTT
>SEQF1086_CAE42275.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTVAKIAAAVLALVALGLGYAAFMLATRPAPPPPKPVAQRASAALPTYPVVVAGKPIAAGDRLAADLLKIERWPVQPAN
GYAESEALLGQMVRQDIPAGEPVTAPMLARGLARHLAPGERAVTIAVDELSGAQNRILPGDLVDVFVVMDRGIEVPGTQT
RLLQSRIKVLAYGQRSVDGPPQGEEKPSVAQRGQPPAAPRNAMLAVPVERVNELLLAAKAGRLQLVLRSPEDIDVPDLAL
FPERAPVLALRAGLTAEQQRDGKDGVNQAYAGEILPQLAGPTAAPVPKPRAAGGGGGRSIEVVRGGDVQAVRY
>SEQF1086_CAE42276.1 putative type II secretion system protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKQHKVGRHWAGWAMALACLGAAAPLAAQPAAPAGAAQARELLLEVKGQQPLRLDAAPSRVAIADPQVADVKVLAPGVGR
PGEVLLIGRQAGTTELRVWSRGSRDPQVWTVRVLPQVQAALARRGVGGGAQVDMAGDSGVVTGMAPSAEAHRGAAEAAAA
AAGGNDKVVDMSQINTSGVVQVEVKVVELARSVMKDVGINFRADSGPWSGGVSLLPDLASGGMFGMLSYTSRDFSASLAL
LQNNGMARVLAEPTLLAMSGQSASFLAGGEIPIPVSAGLGTTSVQFKPFGIGLTVTPTVISRERIALKVAPEASELDYAN
GISSIDSNNRITVIPALRTRKADTMVELGDGETFVISGLVSRQTKASVNKVPLLGDLPIIGAFFRNVQYSQEDRELVIVV
TPRLVRPIARGVTLPLPGARQEVSDAGFNAWGYYLLGPMSGQQMPGFSQ
>SEQF1086_CAE42277.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTNMKTHAREWAALDKSTCFLFCSGDNDVAQQLGHAIGDLGLLMQELPEPEQLARRLADIDPQVVFLDFTGGQADPGKLL
LAADLARVLARVAPAVPRVAVGYLAQPDGAIAALRAGVSDFVDPSVSPDEVHGVVQRLVSNRRIGGGSGGEHRSVLILGA
RPGVGASTLAVHMAGLTQERMAQAALARQGAVAGKPARSAEVMAAQLPLSDRVGVLDLGWPIGDCLLYLNISSDFDFAEA
ARNLSRLDGTLLNSAMAHTASGVSALALPREVEQVRALSPNDSLLLFERLRQHYGTLVTDAGGLANPEFVAKLARASHET
WLVTDQSVSALVSLAGAVQELEQFHVEKSALRLVVNRYDERYGMSAAQIAERFGLELAGTLPDRTLPLMVCTNQGRLLHE
QAERDIYVRAVQTLVDRLLAGSEAPRARHNSWLANWLPGVHRLTNVVES
>SEQF1086_CAE42279.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLMAWLLGALALALLAAAALLLRQARDGARRQASEAFLERQLELRPGQPGASQASAARRRLPISNGAWRQLLLRAGVEP
TPRFLAASVGAHLGVPALAWLFGGWISAAAALLLVALLWYFHLWLKADRRRMVHQLPTFLDALVRLITIGNSVNAAFQNA
LGSVEQPLLEVLQRADSQVRSGKDLDAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELT
ALSAEVRLSAWILALLPIGLALFIIIFNNQLFMGMWHDPMGFRLLVFAMLLQAGGSYWLYRMARSV
>SEQF1086_CAE42281.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRSHRLGLALAAAAPLLLGGCQTSNVDTAMQLMQQQQQEQALAQQREDADERKRLAAKPELALSLIREAQREGRYFASL
AYLDAYRQNFGDSPQVAVMRADALRMTGQIAQSESAYRALTGTDQAAAAWHGLGLLAGGRGDFDQAADYLARATRLRPTD
ANMLNDLGYALLRAGDPRGARLPLGQAAELAPANAKVLGNLALLLLVEGDYAGARQVMDRAALSPRARQRVQELASQTRH
AGVSAAAAVPVAQAAGREAMVMPVLQRPVMDRFGNPPLLQ
>SEQF1086_CAE42283.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNVPRPLRARRRQRGSILIPAALAILIGVALLGAAQLGYFFYMKRELQKTADLAALTGVQVLSPGDEAACAAAGQAVRAS
VRANLGSRADDGLSIEPTCWRWARDEAELAPRYVREPADPSERYNAVAVVLGMPVRALFPFLGGRTLEVEAIAARPADPI
AAFSVGTGLLATGSGELTRLLKQVGLDIGGTAVLGYDIGLAGVKITPAGLLDALGIAVPTDISVAGLNQLLSANVSALDG
VLDAVVRAASRDSLLDANVGLVQAIETAVGVKDLAVRLGSETAERAGGLFANIQAPDAASALNVELDALEVLATAIGVGT
SGHAIACGVAVPLLMSGPARCSVVEPPSIAIGGVGATAYTSQIRVHAPLRLDTGSLLGGLVRLDLDIPLTVDVVNGHGTI
EALCHARDAAGRDLAVVSTRSSLLKICLGGPPAGLTGPELANWPFSTTASCDENLTRKRLLGLELNLLGKRVNLASLNPD
PPLVVPALQTTSEDDYYAGQRRSLGNELALGDTVKDLVDALLAALIGNSLQGGAGLGGGDQGELRKDLAGKIWADTAAEV
AACTPGASGKAGYDCRRARWSRGIENIENYSNGLTGFLGGLSANTLGLLGNLVTLDVVGLLGNVVGLVGNLVDLLGDILG
GILGVLFPTNQCATWSLLGGYQGSEAGCVNELGKALANSTPPSGGNPPNAIVVLLGYLLKPLADILNMIGADLLRPLIEN
VLGLRLGVTDVHMMSIDCDGKGVQLVY
>SEQF1086_CAE42284.1 putative response regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDQAPACDAVDVYVWEGTSDIAFRAERALAGYEATVIHVDNSVALPPSRDAARPAVGLVSVSVMGDARFAGFDWLATQG
IPVIWVAGEERNHDPRYYAPAYSYTLPLAFTGAELRRLLFRLAGVARAAAVDEPRPAPAMIAVSPAMRGLLAEAEMFADA
RANVLVHGETGVGKERIARLLHDQSSWAGGPFVAVNCGAIPEGLFEAHFFGHAKGAFTGAVGAHKGYFEQASGGTLFLDE
IGDLPSYQQVKLLRVLEQSSVTRLGSTVAIPVEFRLVAATNKDLRALVAQGEFRADLYYRLAVIELHIPNLEARGAAEKT
AIFAALLRQQGIEDEPPAWLLQRVAAARYPGNVRELSNLAERVAILRRQLRAWDQPRIEQVFERHAQATPLAPATPGDAD
APAFNAAERAERERVLAALEANGWRRQDTAHHLGISRKVLWEKMRKLRLGEAQAETADGVADP
>SEQF1086_CAE42285.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKIRYLGAGARLTVAGLALSSLAACASAQSESRPVVQQVEEKQAAAAPVEPPAPAPAARPASTVSELQGLIQARQVSELR
TTYNGSYGASLLYKPDELTYYVALFQQKDFWRVLKTKSVNQAESTYRAFASKTAELAEVDIQRIRLQAEYAHAEKQLGAR
NAELTALQADQALRQQQEQQVAVRQAQSRQEADSLSEQRQEVRSQLRAMQRQIDALQAEQARVAAPARRGK
>SEQF1086_CAE42286.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALKVFDLQCEQGHVFEGWFGSHEDYDAQQARGQIACPVCESSRITKRLSAPRLNVAHLHQPAAAPAPAPAPAPESEAAR
MARLQAAVLRQVRELVRNTENVGARFAQEARRIHEGEADERPIRGTATPQERAELADDGIDVVSLPAFLDDERMQ
>SEQF1086_CAE42287.1 putative ECF-family RNA polymerase sigma factor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHPSSLQSQAPAPELAADAQLAARAAAGEDSAFETIMRRHNRLLFRTARSILHSDAEAEDALQEAYLRAWRALDSFRADA
RLSTWLVRIVINESLGRLRRGQAQVIPLDAAMESTELQNQEWLHDAIDQQPDRQAMRAEIRRLMEARIDLLPDAFRSVFV
LRAVEELSVEEVAQALDIPEATVRTRFFRARGLLREGLSRDVDMAIGDAFSFDGQRCDRIVAAVLARRGERAGA
>SEQF1086_CAE42288.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSFLQISSPCAARRRFLGHGGLVLSAAAVALLAGKDALAAQAGSGSSQDVQILNTALAAELEAIAAYQLDAESKLLDKPV
LALALTFQGHHKEHADVLGKTVEKLGGQPVAAKRSYAFPTSQLKSQADVLRFAAKLEQGAVSAYLGAVPLFANRDLSKAA
ASILGDEAMHWAVLRQALGEPPVPSAFVS
>SEQF1086_CAE42289.1 putative cytochrome c [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAGLAWRAGALCLALAAPSAARAAAPDPVRGEQVYARCLACHALAYDRVGPRHCGLLGRKAGSVPGFAYTQAMKDSGLT
WDAATLDRFLADPLKTVPGTAMTYAGVPDAGERADLIAYLRAAAASPACAGVATPH
>SEQF1086_CAE42290.1 putative elongation factor P [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTAQELRVGNVIMVGKDPLVVQKTEYNKSGRNAAVVKLKFKNLLTGSGSESVYKADEKFDVVVLERKECTYSYFGDPMY
VFMDEEYNQYEIEADSMGDALNYLEEAMPVEVVFYDGRAISVELPTILVREITYTEPAVRGDTSGKVLKPAKINTGFELS
VPLFCAIGDKIEIDTRTNEYRSRVN
>SEQF1086_CAE42291.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRADIFCRVIDNLGDIGVCWRLARRLAHGRRWQVRLWVDDLAAFARIQPGIVPDRDQQVCDTIEILRWDDRAEWPQTPGD
VVIEAFACDPPPAYVAAMRRFQPVWINLEYLSAEAWVETCHGLPSQRADGLVKHFFFPGFSAATGGLIREPGLSRDRDAL
QTSRAQQRTLLRALGLDEAALARRDDGARLVNLFCYPDAPYQALAHALMQDARPTLLLVPQGVAPGLPEPGQHGQLTLAR
VPYVSQPDFDRLLWCADLNCVRGEDSFVRAAWAARPLLWQIYAQAENAHLEKLQAWLARYPAPAAAHALIRAWNQAPGAP
APQQALAGALAEPAWGEWNQAARAWDAAQAARPDLGDALADFCAELAKTS
>SEQF1086_CAE42292.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARTRSQSSPRLNRDASRLVALAHALDRSGSKVEDLYWEAQLAEAITKLLRSGHDAPLESALDNLAQTDPGAYEVLIEQS
ETLSESMQIEKNGTRHDVVLLVAPVVAWTRYTIPTGPIPAPAQQALLAQLHGHILADGVRVALMPHLVSIDQMPRTFAET
WQWLHRLGTQALGAETAKPALNDDVETANMLADTRYVVAAVAVPERAPVFRWQERWDDPQASRDACLAQWVEQAQPTLAA
LLPGCGIECLLPDAYYVSNREADRRVRPLSLRAAIAWLESAVSLEPSQMRAVVAGCGEARIDEYRIGFTARNSNDVYYGC
VWPLYGREDDVPADEGQPNAVDEIAALLKEYGVSDVRRIPGVLPPEYCEDCGAPHFPNPLGELVHAELPEDAEAVPAKFH
>SEQF1086_CAE42293.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRLPTLFVSHGSPMLAVEPGRTGPALTAWSDGLPERPRAVLVVSPHWMGQGLAVSTRDRQVAWHDFGGFPADLYQLQYPA
EGSPRLAQQVVDVLAHAGIQAGNDARRPLDHGAWVPLRYLYPHADLPVVQLSLDMERDARGQYALGQALAPLRDDGVLVI
GSGSLTHNLRDVRMPHGAPPADYVAPFQQWYAEHLAAGDVEALLDWQARAPGAARAHPHDDHLMPLYVALGAGGMPARRL
NDEVAYGALAMDAYQFGA
>SEQF1086_CAE42294.1 putative aconitate hydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPHNTFDTLKTFKIGKKTCQFYSLPALGKALGVDVQRLPVSIRIVLESVLRNCDGAKVTQEHVRQLANWQANAKREDEIP
FVVARVVLQDFTGVPLLADIAAMRSVAAKMGKDPKRIEPLVPVDLVVDHSVMIDYFGTKNALDLNMKLEFQRNRERYQFM
KWGMQAFDTFGVVPPGFGIVHQVNLEYLARGVHRDKNNDVYYPDSLVGTDSHTTMINGIGVVGWGVGGIEAEAGMLGQPV
YFLTPDVVGVELKGKLRGGVTATDLVLTITEMLRREKVVGKFVEFCGEGTASLSVTDRATIGNMAPEYGATMGFFPVDER
TIDYFEGTGRTAEEIAALEAYFKAQKMFGVPKAKDINYTKLLTLDLGTVAPSLAGPKRPQDRIEIGNVKNTFTELFSKPI
AENGFNQPADKLHQAYTTSAGTKVKNGDILIAAITSCTNTSNPSVLLAAGLLAKKAVEAGLKVPKHIKTSLAPGSRVVTE
YLTKTGLLPYLEKLGFDVAAYGCTTCIGNAGDLTADLNEAILGNDLVCSAVLSGNRNFEARIHPNIKANFLASPPLVVAY
ALAGTVTRDLMTEPVGRGKNGDVWLGDIWPSSEEIQALLKFAMNPTAFKENYSQVKSNPGKLWENIKGVTGETYNWPEST
YIAEPPFFEGFGMTPAAMPAVKGARALGIFGDSVTTDHISPAGSIKETSPAGKWLKENGVMKADFNSYGSRRGNHEIMMR
GTFANVRIKNLMIPARPDGSRFEGGETLFQPTGEQMSIYDAAMKYVAQGTSSVVFGGEEYGTGSSRDWAAKGTQLLGVKA
VIARSFERIHRSNLVGMGVLPLQFKGSDSAQSLGIVGNETFDVTGLEGGIKPMQDVTLTIHRADGSRQDVTVLLRIDTPI
EVDYYQHGGILPFVLRQLLAA
>SEQF1086_CAE42295.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFGRWILLPTLLALAGCASTRPPADPENICAIFREKPSWHDAALDVQKKWGAPVNVPIAMMHQESSFRHDALPPRYYFLG
FIPWGRVSSAYGYAQAKDETWADYKREAGGWLASRDNFSDALDFMGWYMSKTQRINGVSKWDAYGQYLNYHEGWTGYRNR
SYDRKAWLKRVAQQVQARAERFGAQYKGCERELNRGGWLF
>SEQF1086_CAE42296.1 putative ferric siderophore receptor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPLPLAYLAALLPWYAGVIQAQSAPAAGDDASITLEAVRVEASADASAGGLAPAFAGGQVATGAKVGILGTRDNLETPF
SITAYTNELIQDRQAKGVGDVLQNDPGVRVARGFGNFQESYFIRGFILSSDDIAYNGLYGLLPRQYISTQLFERVEVLRG
ASAFLTGAPPSGGGIGGVINLVPKRAPNEPLTRFSAGYGSDSVLEASADIGRRFGPDDSVGIRINAAQRGGETAIDGERT
RTTVFALGLDWRGERARLSADIGYQDNRLKRARPNVTLAGDAAKVPGAPDAGSNYAQPWSYSNERDVFGTLRGEYDFNGR
ITGWVAYGMRQSKEENSLANLNNVNGAGQGKFYRFDNAREDTVNTGEIGLRAKARTGPVGHELVASASYFDLEKKNAYVM
DFFNQFDTSIYDPVSYAKPAISSTAFRGNDMDDPAKQGVIRLASYALGDTMSFFDDKVLLTAGIRHQRLYQRDYSYDTGI
GGTPYEQSHNSPAAGLVVRVTPQVSLYANYIEALSAGDTAPQTANGLPVVNHGESLAPYVSKQKEVGVKFEHDGLGGGLA
LFSTDKPRGFVGDDQVFRASGKDRHRGVELTTYGELTRSVRVLGGLTWLDAKQLSTGNAATDGKRVIGVPRFQANLGVEW
DIPGVQGLTVDGRVVYTGSSYADAANTLEVPGWTRLDAGLRYMTDIGGHLVTWRARVENIANRDYWSSVGGYPGNGYLVL
GGPRTFTLSASMEF
>SEQF1086_CAE42297.1 putative haloacid-type dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEPVRGMDIEVLFFDVLGTVVDWRGSIADEVAAFLKRHELPHVDAHQFADAWVGQYDAAIEPIRAGQRAFAPLDIINMEN
LQACLAQFDLAPARFARSELETLNHAWHKLRPWPDSVAGIAQLKQRFIVAPLSDGHTRLLVDMAKHAGLPWDMVFGADAS
RSYKPAPQAYLHACALLDVPPQRAMLVAAHGYDLDAARSCGLKTAYVQRQRAADPSKAGYRGAPENWDYQAGSLTELAQL
LAKA
>SEQF1086_CAE42298.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE42299.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATHPVGPTLLAALTLLAACSGSMAQEPPYKSTILGLQATILDLKGLPSDTDGGISDLSAQVGALAARHEGVSVRQGKDA
VTIAMMGDVLFDFDKADILAAAEPTLRDIAELIKSPATGIVAIEGHTDSKGSDSYNKGLSLRRAQAVAQWLGAHGVDAAK
LSVRGLGAARPVQPNQLAVKIQ
>SEQF1086_CAE42300.1 hypothetical protein BP2020 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIDAVRSGEILSIKIRFKPVVMGKTETIYSQISKSDYENSFYVIAGNKKHLLLKDSNDVPLTNPKVLIRTSSDAPIAGSW
QGKFPAPPKEIKEVSLTIPGVETFDVIQITDR
>SEQF1086_CAE42301.1 putative aconitate hydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLETYHQHVADRAALGIPPLPLSAQQTADLIELLKNPPDGEAQNLLELLTYRVPAGVDDAAKVKASYLAAVAFGTESCAL
IDRAKATELLGTMLGGYNIGPLVQLLDDAEVGTIAADALKKTLLMFDAFHDVKEKADKGNANAKSVLQSWADAEWFTSRP
EVPQSLTVTVFKVPGETNTDDLSPAPDATTRPDIPMHALAMLKNKRDGAAFEPEEDGKRGPVQFIESLKEKGHLVAYVGD
VVGTGSSRKSATNSVLWFTGEDIPFVPNKRFGGVCLGSKIAPIFYNTMEDAGALPIELDVSKMEMGDVVELRPYDGKAIK
NGETIAEFTVKSDVLFDEVRAGGRIPLIIGRGLTAKAREALGLPPSTLFRLPNNPADTGKGYTLAQKMVGRACGLPEGQG
IRPGTYCEPKMTSVGSQDTTGPMTRDELKDLACLDFSADLVMQSFCHTAAYPKPVDVKTHHTLPQFISTRGGISLRPGDG
VIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGVTLRDLVNAIPLYA
IKQGLLTVAKQGKKNIFSGRILEIEGLPDLKVEQAFELSDASAERSAAGCSVRLHKEPIIEYINSNIVMLKWMIANGYED
ERSLGRRIKAMEAWLADPKLLEPDADADYAAVIEIDLADIHEPIVACPNDPDDVKTLSDVAGAKIDEVFIGSCMTNIGHF
RAASKLLEGKRDIPVKLWVAPPTKMDAQQLTEEGHYGVFGTAGARTEMPGCSLCMGNQAQVREGATVMSTSTRNFPNRLG
KNTNVYLGSAELAAICSRLGRIPTREEYMADMGVINKSGDQIYQYLNFDRIPDYKDVADVIEV
>SEQF1086_CAE42302.1 putative exonuclease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPVGPAGRCFYCCFGINMAYFRRYTTPHPYGQTLRAGAAAGRASAARDGLRALDGPFVVADLETTGLSVATCEILEFAAV
RVSACGQIEREFTQVVRTDGRVLPFISRLTGITQAEVERDGVPVRQAFGDFLDFIEGGPLFFHNASFDRRFLQAAADRTG
LPFEAQTHCTLMLARQAWPELPSHKLNVLARHLGASEPTHRALADVRTTVAVALAARARLAAQG
>SEQF1086_CAE42303.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAASDTPGASAGEFDAIRDAVRGFAAERQWEPFHSPKNLAMALAGEAGELVAVFQWLTEAGSRELTPSQRQAAADEIADV
QLYLVALADQLGLDIPAAVAAKMRKNALKYPAERFRGSARKYNDESGR
>SEQF1086_CAE42304.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIQEIASILVQPGREADFEAGVAQARPLFMRARGCHGVALHRSIEAPQRYTLVVDWETVDNHMVDFRQSADFQEWRKLVG
ECFAEPPQVHHEQKVL
>SEQF1086_CAE42305.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHYLLFYDVIPDYPARRAQYRAEHLALARAAAQRGELVLAGALADLIDGAVLLFTGDTPAAAEAFAAADPYVREGLVTHW
RVRPWTTVVGEQASQPVPD
>SEQF1086_CAE42306.1 putative integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPLSHLLLALSVVFIWGTNFVVIKWALADFPPFLFAALRFLLSVLPWVLLFRRPAVPWSRLAAFGVLLGVGQFGVLYWAM
QRDITPGMASLLVQSQVFFTILMSMAFTGERMRLWQALALVLAVAGYAVVAWYSVADPGAAITLLGVGLVLLAGLSWACA
NMVARTAGRVNMVGFIAWSSLFAVPPIVLISLLAEGPAAIAQAVTHASPAAWAAVLWQAVGNTVFGFGAWNWLLARHPAT
TVAPMALLVPVFGMLASTLLLDESLPGWKLSAAALVLGGLALNLYAGRLDAAARMARAGR
>SEQF1086_CAE42307.1 putative integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSILQHVLFLACVALATYAQTMTGFAFGLVLLGLTGLLAVAPLPDMANTVSILTLVNALVVIDRARPQVDWTLVRPALVS
SLAGVALGVFMLDWISGSAAVLLQWLLGLTILACAIQLVARARPLARVSSRRSFVGFGVVSGVLGGLFSSAGPPMVYHLY
RQPLPLATIRNSLLILFSCNAMTRLALVGAQDSLHTITFWLSLKAFPVVVALTWLVRRYASARSIHTVKRLVFVLLVAAG
LGLLVPASGALWTMWH
>SEQF1086_CAE42308.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKKIATLAALAASAALVGPALAGGSHSSSGVGAYGGSVKGSVESISNGSAAAASQVMGTGFSKQFASGETSGYASMGGAI
HRDGVEVWTDTSQYSKTNGFGMTGGNAPAQIGDVIVNGAGAFAESNTEAIAKGKFQMFQIGRIGGYGHR
>SEQF1086_CAE42309.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE42311.1 putative LysR-family transcriptional activator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDVRALRYFVETVRTASFTQAARALFVTQSTVSKMIRQLEDEVGTPLLIRDGHTARPTDTGRIVYERGLHILGAMRQLDA
EVREAVDLQRGELEVGIPPMINLLFTPVVKRFRERHPHIRLSLREDTGQAVERLVAAGELEVGATVLPIQDPGPLQATRF
GSYALWVIGPPAAAWAGKTALPLTALRDLPLLLPTDDFALTRRLRQACAQAGFAPRIAAQSAHWDFLAAMASADLGVALL
PEPLVQRLKTRGLSTARLAKAGLQWEIGHIRVRDRYLSHAARAWLEVATEVLGNGQPARKPSR
>SEQF1086_CAE42312.1 putative acyl-CoA transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGDSMHLERIRHPGLRARLASPQEAARLVHDGMTVGMSEFTRAGDCKSVPAALAERAAAEPLRITLLTGASLGHDTDKL
LAQAGVLARRMPFQVDTTLRRKINQGEIAFVDQHLSETVEQLRAGHIGPIDIAIVEAAAITEDGGIVPTMSVGNSASFVE
QARLVIVELNLGVPAAIEGLHDIVIPGARPGRQPLPLVSVDQRIGAPCIAVDPDKIAAIVVTNEPDSPSNALPPDEEIGA
IAGHIVGFLRQEVNQGRLSRSLLPLQAGIGTIANAVLHGFGESEFEGLTMYSEVLQDSAIELLDQGKLSFASASSITVSL
PVYERILGNLEHYRQRIVLRPQEISNAPELVRRLGVIAINTALEFDIYGNVNSTHVGGTHMMNGIGGSGDFVRNAHLSIF
VTKSMARNGDISSVVPMVSHVDHNEHDVDILVTECGLADLRGLAPRERARAIIAHCVHPSYRDALRDYFERACRRGGQTS
HLLEEAFSWHQRYNETDTMRLAAPAARRVA
>SEQF1086_CAE42314.1 putative LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLTSTSRLPLNVLPVFRVVADLQNLRAAALQLHLTHSAVSQQIRTLETQLGFALFDRRARRLVLNPAGQALLRATEPALA
LLDEGVQAAAAAAAGSGLRLRISVLPSLAQLWLLPRMARWHAHHPDIALEIETSQQVVDLHREGFHAALRFGRGPWAGQQ
SEPLFDTPTRMILVAAPATARRLAGADPQRLAHEPLLGEQGLWQAWFQAAGVRATIKPVALFNDAGMLAQAAEQNLGLAL
VRELLAADALTAGRLVRLSPLAIAAEQRQTFHLVYRPELSDWPPLQALRQWLHDELALARATLAHEAGTPPRRRRARPAT
>SEQF1086_CAE42315.1 conserved hypothetical protein, partial [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
VKKNPSSPAGCPCGKPRAYPDCCGRWHAGALFLQAPDAESLMRSRYSAFVLDQLDYLLQTWHPDTRPSELEPNAADVKWL
GLQIKASQQQDDTHATVEFVARLRQAGRATRLHELSRFVKEEQRWYYVDGDIR
>SEQF1086_CAE42316.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDIAHRETQSRFETTVDGQRCELDYVLRDHIMTIVHTGVPAPVGGRGIAAELTRAALDTARQRGWKVVPQCSYAAVYLK
RHPEYQDLQA
>SEQF1086_CAE42317.1 putative hydroxlacyl-CoA dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNPPEHVVSPPIARVAVVGAGTIGASWAALFAARGLRVTVTDPAPGAAESLRGRIADIWPALAAAGAIQDGADPDAVRFD
ADLQEALRDADFVQENAPERPDFKADLFTRMDAALPPHTIIASSSSGLPMSALQAGCRHPERCVIGHPFNPPHLIPLVEV
VAGRQTAPAAIERAMAFYRSLGKYPIRIDKEIPGHVANRLQAALWREAIHLVADIDAAVTQGPGLRWALYGPHMTFHLGG
GEGGLAHFLDHLRGPVQTWWDDLGQPELTPALQRKLIQGVAAEAGQRSIAELSATRDAQLTAILAILRQQGSPHP
>SEQF1086_CAE42318.1 putative amidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQLWRMSASDLAQAIRAREVSARAAAEAALRRLDEVNPRLNAVVDWRPDEVLAQADEIDAALARGDDPGPLAGVPVTVK
INIDQAGFATSNGVALQKDVIAQANSPVVDNLRRAGAVILGRTNAPAFSLRWFTSNLLHGRTLNPRNAALTPGGSSGGAA
SAVAAGIGQLAHGTDIAGSIRYPAYACGVHGLRPSLGRVAAYNAALPERSLGGQITAVSGPLARTVADLRLGLAAMAARD
ARDPWWMPVPLEGPPAPRRAALCVSPDGLETQPAVCAALYEAAARLRDAGWQVEETGAIPPLQEAADLQIRMWLADGYEA
LLRAAQQEGDPGALVALCGQQEAARALDLPGYTATLTRRATLTRLWQLFFEDYPVLLLPVSAEPPFADDLDLQGADAYRR
VWRAQLTQVGLPFMGLPGLALAMPGVGAAPLGVQVVAARFREDLCLAAGADIEARGAPVTLAGP
>SEQF1086_CAE42319.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMQAGMYSQTVTFLFSLFVLCFITCTISGLVLFLFKARRANEELRHPLLQHRPFKQYPFAIQASIMLDYFLRLAFPRTKW
WLIGHANKQLAHVDPKRVPLDVKWPIIGFWGACWLGLLAMISLWAMLLLGM
>SEQF1086_CAE42320.1 putative gamma-glutamyl phosphate reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSIETYMQSVGEQARTASRAMMRATGAAKNQALLAMAEAILAQRAELQAANAKDVAAARANGLEAALLDRLTLSDRSIE
LMAEGLRQIAALPDPGGSITATSVRPNGMRVAQMRVPLGVIGIIYESRPNVTIDAAALCLKSGNATILRGGSEALHSNVA
LGRIVQAGLQAAGLPTAAVQVIDTTDRAAVGKLVTMTEHVDVIVPRGGKGLISRLAQEARVPLIKHLDGNCHVYVDAAAD
LAKAHDIAFNAKTYRYGVCGAMETLLVHADVAQRLLPALGQALREHGVELRGCARALQWLPEGKPADDADWATEYLGPIL
AVRVVDTIDEAMDHISRWGSGHTDAIVTENLSAAQRFQREVDSSSVYVNLPTCFADGFEYGLGAEIGISTNRLHARGPVG
LEGLTTLKWVLNGEGQVRA
>SEQF1086_CAE42321.1 putative DNA polymerase III, delta subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAPLDSDALASHLARAGGRLAPLYTVSGDEPLLVTEAADAIRAAARAAGYTDRTSMVMDARSDWSAVAAATQSVSLFGD
RRLLELKIPTGKPGKSGGEMLARLADQARDQADADTLVVVALPRLDKATRESKWAQALARGGVMADIANVERGRLPAWIG
MRLGRQNQRADTATLQWMADKVEGNLLAAHQEIQKLGLLYPEGQLAAEDVERAVLNVARYDVFGLRDAMLAGDTARTVRM
LDGLRAEGEALPLVLWAVGEEIRLLARVAQARQQGQDAGALMRRLRIFGAHERLALQALGRVAPGAWPAAVQHAHEVDRL
IKGLSVPGRLADPWEEMTRLALRVAAAGARP
>SEQF1086_CAE42322.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNFAGHFLHFPRLTWPRGIALAMLMLLAGCGFTMRGVTPLPFDTLYVGIPDNTRFGADVRRALRAASPNTRQVPTSKDAQ
AILQQVNTDRTLREVSLNAQGRVEEYELGIDYTFRLIDAKGNALVPDTTMSIYREMPYDDQVVQAKQGQIDALYQSMEKE
LVNRLLRRLTAPDVHEAAARAAAGTLDPDAPVYDPNQATPASQPSPWNTPNAYPGMDTP
>SEQF1086_CAE42323.1 leucyl-tRNA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQERYQPNSVEAAAQQTWQARDAYLVHEHAKNPDGSEKPKFYACSMLPYPSGKLHMGHVRNYTINDMMARQLRMRGYNVL
MPMGWDAFGMPAENAAIKSKVPPAKWTYDNIAYMKKQMKAMGLAIDWSREMCACDPKYYKWNQWLFLKMLEKGIAYRKTQ
VVNWDPVDQTVLANEQVIDGRGWRSGAPVEKREIPGYYLRITDYAEELLDQVSTNLPGWPERVRLMQENWIGKSEGLRFA
FPHRIAGADGKLIQDGKLYVFTTRADTIMGVTFCAVAPEHPLATHAAQSNPALAAFVEQCKLGGTTEAEMATREKEGMPT
GLTVTHPLTGAEIDVWVGNYVLMTYGDGAVMGVPAHDERDFAFARKYGLPIRQVVALEGKTYSTDAWQEWYGDKQAGRTV
NSGKYDGLAYQAAVDAIAADLAAQGVGEKQTTWRLRDWGISRQRYWGTPIPIIHCADCGPVPVPEQDLPVVLPDDLIPDG
SGNPLAKNEAFLSCSCPRCGKPARRETDTMDTFVDSSWYFMRYTSPDNDQAMVDARNDYWMPMDQYIGGIEHAVLHLLYA
RFWTKVMRDLGLLNFDEPFTKLLCQGMVLNHIYSRKTPQGGIEYFWPEEVDNVYDAKGAIVGAKLQRDGSEVNYGGVGTM
SKSKNNGVDPQSLIDTLGADTARLFVMFASPPEQTLEWSDSGVEGANRFLRRLWALGYAQREAVGRGLATGADWAQAPAP
VKELRREVYGLLKQADYDYQRIQYNTVVSACMKMLNAIDDAPLPEGPAADAARAETLGLLLRVLYPVVPHITWHLWQDLG
YAEHLGDLLDAPWPHVDEAALVADEIELMLQVNGKLRGSIRVAAKAPKEDIERIAAAQEEVARFLEGRPPKRVIVVPGKL
VNVVG
>SEQF1086_CAE42324.1 putative transmembrane transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSPARARLTAPIVLLMSVATGLAVASNYYAQPLLHTIGAEFALTTATAGAIVTVAQLSYAVGLILLVPLGDLYERRTLIA
LMTALSAVGLLLSAFSPGIGWLMLGTAVTGLLSVVAQVLVPFAATLAEPHERGKVVGAVMSGLLLGILLARTIAGALADL
GSWRTVYWVAAILMLLMSMALWRVLPRSVNPTRLSYPRLLASIVQLYAQEPLLRARSVLGALLFAAFSMLWTPLTFLLSG
PNYGYSNTTIGLFGLAGAIGAYGANRFGRLNDRGQGNRSTRQGLLLLASWPLLAWGAHHVAPLLAGVLALDLAIQAVHVT
NQSAIYRLRPEARSRLTAGYMTSYFLGGAAGSLLSAWIYAHAGWLGVTAAGALTSLAALLYGCLARSARIPETTPAPAIA
>SEQF1086_CAE42325.1 putative MarR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKDHVDLVLSQWAHERPDLDVSSMAVLARIFRFNTAALRRIEPLFRAAGLHQGQFDLLATLYRAGAPHALSPQQLTAALL
LSSGAMTHRLDQLEQGGLIARSPNPDDRRGVIVSLTPAGLRTIRQILADYLEAIDALLTPLSATERRQLAGLLKRLLAEH
DRTTPGGIPQ
>SEQF1086_CAE42326.1 DNA-binding protein Bph2 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRPIKEALNKSQLIAYLVENTGVEAKSVKAVLAGLESSVLASVDKKGAGEFTLPGLFKVAVQKVPAKAKRFGKDPFTGEE
RWFPAKPASVKVKVRPLKKLKDAAQ
>SEQF1086_CAE42327.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE42328.1 putative sulfate transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGKTVRGGAAAILGCWVNDITPGTLRADAQAGLLGALLVLPQGVAFAMLAGLPPEYGLYSAIVPCIVAALFGSSRHVLSG
PTNANSLALFAVLAPLALPGSPGYIQMALAVTILVGVMQLAVGLLRLGSLANFISPSALFGFTSGAALLIAVHALKDALG
LEGVQAHSAGAVLAAVGSRLGEAHWGASVVALTTIIVTLLVRHWDRRKPHMLAGLAAGTLLAAALNAGVFTAAGQPISVL
GGLAQPWPPFHVPAVQWSVLPDLVGVAVPLTIVALAQSISIAKAVAMRSGQLIDANREFIGQGLSNVVGGLFSSYLSCGS
LNRSVPNYEAGARTPMAAVFAALLLVLLVLVSSPVLALIPHAAIAGLLIVVAWSLLDLPRWRVLVRIAPREALIAAATLA
ATVTIRMEIAILLGTLLSLTAYLYRTARPAMRPMGFDAADPQRHFAVLEGQPGELPECPQLKLLRMEGSVYFGAATHVTD
RLQALRAGASAGQRHLLVMSKSMNFIDHAGAQVWEEELRRRRAGGGDLYFHRPRPEVLRDWRRSGFIDRLGADHIFPDKA
TAIHTIYERLDPEICRGCTARIFTECGPPGTAHQPGAERAE
>SEQF1086_CAE42329.1 50S ribosomal protein L33 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAKDIREKIKLESTAGTGHFYTTTKNKRNMPEKMLIKKFDPVARKHVDYKETKLK
>SEQF1086_CAE42330.1 50S ribosomal protein L28 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARVCQVTGKGPMVGNNVSHANNKTKRRFLPNLQSRRFWVESENRWVRLRVTAKAIRTIDKNGIDAVLADLRARGEAV
>SEQF1086_CAE42331.1 putative transmembrane transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPPQTISRSMPGWLILMGALTAIGPFSIDMYLPAFPSIAAGLGVERGEVERTLAAYLIGMAGAQIIYGPLADRYGRKLPM
MGGLILYVLASLGCALADDIQTLTACRVAQALGGAAGVVIPRAVIRDHYETQEAARAMSLLMLLMGLAPILAPLAGAQLL
AFVGWRSLFWLMAAGGLALLLAVALTMKETLAPERVLPLRAGTILSNYRALLAHRGFMGHSLAGGMGQAGMFAYIVGSPR
IFIELYGIAPQYYGLLFGANAAALIVGSQISARLLRKSAPATLQQRAQVALAVASLSALALALALLGLMSLPLLMACLMG
YMFSQGFVNPNSAALALAEQGRRLGAASALLGTLQLSCGALAGLIISIWPAESVLPLAAVLAGSACLSWQFGRMARRPA
>SEQF1086_CAE42333.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE42334.1 putative periplasmic substrate-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRFTPVKTLAALAALCAFSGAAQAADKPQCEVSRPVNFGGMNWESNLVLVDIERFIMEKGYGCKTEVLPTETLPALAALE
RGDLDINTEIWLNSVADPWDRAQKTGKVKRVGELYMGGEAWFVPRYTAERLPELKSAADLPKFKDRFKDPEEPGKGRFYG
CPAGWGCEVTSTNLFHALKLGDSYTLYSPGTGAAQKAALMSAYKRKQDVVFYYWYPTPLVGSMDLVKLELPPYDAEKHKC
LTAPKCSDPQPSAYPENPVFTAVNTRFSEEAPKLTEFLSKVAVPLPVMDQTLAHMEESGDESGAVAQWFLKNQADVWKKW
VPADVAERVQTAL
>SEQF1086_CAE42335.1 putative binding-protein-dependent transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFPEVIPARAVRGAIDGFVDHLVTNYADTLEAMSQPFLSVLVWLEQVLRQSPWWAVVAVTIAIAWLVSRRIGLSLAMGAL
LCVIGVLGLWDAGMQTLALMIMAAGLSVVIGIPLGVLMARVDWLRAGMLPVLDVMQTMPSFVYLIPVVMLFGLGKIPAII
ATVIYAVPPLIRLTDLGIRLVDREVLEAARAFGANPRQQLFGVQLPLALPNIMAGINQTTMMALSMVVIASMIGARGLGY
EVLLGINRLEVGRGLLAGLGIVVLAVLFDRITQSYGQRVRTGGQR
>SEQF1086_CAE42336.1 putative ABC-transporter ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKIEVKNIYKIFGPHPGKWLQAARDGISKEDLLAKSGHTLGLRDISLSIEEGSIYVIMGLSGSGKSTLIRHFNRLIEPS
AGHILVDGVDVVSLNKRDLETFRQKKMSMVFQRFGLFPHRTVLDNAGYGLAVQGVARAEREQRARHWLDQVGLSGFENQY
PHQLSGGMQQRVGLARALATDAEILLMDEAFSALDPLIRREMQDHLLQLQAKLNKTIVFITHDLDEALRLGNRIAILKDG
ELVQEGTPEDILLNPATEYVQSFLQDVNRTKVLNAAHAVNPPRLTLTMRSRPAHALDRMQALSYEYAPVLDGKRLAGVLM
AAAAQQAVDEGARDVSRFVEDLASVPATAGLDQVLAQLVHSDQPVAVTGEGDEFIGMLSRKKVVELVTPVLAESDSADGQ
GDAADAASDGAGQAHERDAA
>SEQF1086_CAE42337.1 putative tautomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPLLNVQIMQGHQPAQKSALLAAACQAVVDSIGAPLASVRVVLEEVPAAHVIVAGELGRQMALVTVDMIAGRTDEQKEAL
IGALNRAVCDSIGIDGTDVRVMIHDVSKANMGVANGISARAAGR
>SEQF1086_CAE42338.1 putative thiolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNEVVVVVVAAARTAIGDFGGGLKDVAPCDLGATVIREALARAGVAGPEVGHVAVGHVINTEPRDMYLSRVAAINAGIGK
ETPAFNVNRLCGSGLQAIVSAAQTIMLGDTEIAVGAGAESMSRAPYIAPAQRWGARMGDSAMVDMMTGALSDPFGRMHMG
VTAENVAARYSISRADQDALAVESHRRAAAAIDAGRFRDQIVPVTLKTRKGETVFDTDEHVRRDITIEGMAALRPVFQKE
NGTVTAGNASGLNDGAGAVVLMSAAAAAQRGIAPMARLVAYAHAGVDPEIMGIGPVPATQAALKRAGLTVDQLDVIEANE
AFAAQACAVTRQLELDPAKVNPNGSGISLGHPIGATGAIITVKALYELQRVGGRYALVTMCIGGGQGIAAIFERV
>SEQF1086_CAE42339.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPIRYTPSELDQPSLSEADGIRYLHFGTEWVQGAMLIRDPARLVLEYTAQMMAWLLFLEPPREQSIGLLGLGAGSLARFC
LKHTRSPVTVVEWNPQVTAVCQMFFRLPTPQRLDVHHDDAGAWVADPARAGDCPVLMVDLYDAQARGPVRDSVKFYRDCR
RVLGEVGVLSVNLFGRHESYGRNIDNLSKAFDDRLVLLPEIDAGNQIVLAFSGPPLAITPAELLARAETVEAQYGLPARR
WARALTRHAVDGVLHF
>SEQF1086_CAE42340.1 putative gntR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTPIVRQALYLEVADRLRTMIRTHALGAGAWVDEAGLTEQLGISRTPLREALKVLATEGLVRLEPGRGCFVNELTVRDL
EQIFPLMAMLEGRCAFEAAQRAGEDDLRALEPLHRALQAHAQAGRIDAYYETNYRIHVAVQTLADNRWLSDMVDNLRKVL
SLFRHKSLALPGRIRESCAEHMAIFAALKARDLEGAEALTRKHLLRQLAALQALAGQEPAGGAAAIDSPAVQAVQELNHV
RTRSPGIRTRRTHA
>SEQF1086_CAE42341.1 putative malonyl-CoA decarboxylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSALDPQASARVARTPDAEPEAVDASAAGESAGLIARLGRLFERDRLPPPADLAQLFEARLTDVRANKLAQAWRLAYEQA
DGKRRRAMLGGLAQVGAGMQGDGAQGTRLFKRFNALPDGLRFLVALRADMLRWRKQVAGLQALDKELEALLSAWFDVGLL
ELRPLTWDSPASLLEKLILYEAVHEIRSWDDLRHRVAGDRRCYAYFHPQMPDVPLIFVEVAFSAQMADNVQALLDTSAPP
QDLDKARWAIFYSISNTQPGLRGISFGNFLLKRVIDRLLQELPKLKFFATLSPIPGFVDWLSRLDAQEVEQAVRDKARTR
SGAPDGARWVARLARAATGKPSEVVQRAGLRLAARYLQAMRAGQPLDPVARFHLGNGARIERLNWAADTSAKGLAQSCGM
MVNYLYELGELDGNLARLNEGKPQVSRGIARLG
>SEQF1086_CAE42342.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRAMKPNSPPGQILCRIDAGVAHVTLSHPGRMNAMTVAMWRQLREVFEALGADAALRCVVVAGAEGHFAAGADIREFPA
ERADLAGVQRYHREILAPALAAVAACPHPVLARIEGVCVGGGLEIAAQCDLRIAAESARFGVPIGKLGFPMAPDEMRGLL
DLVGRAVTLAILLEGRVFDAAEALRLGLVTRTVPAAELDQAVQRSVAAILGGAPQAARLNKRQARRLCAGAPLGEDEYLD
FFSYAESRDHREGVRAFLAGTAPTFTGD
>SEQF1086_CAE42344.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKYPILGAALIAATALGAAAPAQAAWPERPVTIIVPFPAGGGTDTFARPLAQQLGMQLGQSVVIDNKGGAGGTVGAAVAS
KAKPDGYTFFMGGAHHALAPSLYKNLSYDIQKDFVPVALLAQPPQVVVINTAKLPVKSLQEFIEYARKRPGDINFGTAGK
GSTHHLAGELFAMQTGIKLVDVPYQGAGPMLSALIGGQVDLAFDGLGSSAGHIRAGTIKPLAVAAPQRSPSFPDVPTAKE
AGVPNYEVSTWYALWAPAGTPQEAVDKMTAAVTKALNDPKIRETWAGNGSAIPDLTGPQFGAFVDSEVTRWAKVVKDSGV
TLD
>SEQF1086_CAE42345.1 putative superoxide dismutase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKSLIALALAAMSGVAAAQSVEMSLLSPKGDDQKIGQIKYEQTDYGVLFTPDLHGLAPGVHGFHLHDKPSCAMTKVDGKD
MVGGGAGGHWDPDKTGAHKGPYDKTGHKGDLPAVYVAADGKATYPVLAPRLKVADLAGHALMIHVGGDNYSDHPAALGGG
GGRMACGVVK
>SEQF1086_CAE42346.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLIGKKHFLTVGALALAMAIHAAPVMAQQKSVAITAIVEHPALDSVRDGVQDALKQAGYESGKNLKWQYQSAQGNTGTAA
QIARKLVGDRPDVIVAIATPSAQAVVAATKDVPVVYSAVTDPVAAQLVPSMEASNTNVTGVSDLLALDKQIELIKKVVPN
AKRVGMVYNPGEANSVVVVKQMQDLLPKAGMTLVEAAAPRTVDVASAARSLIGKVDVIYTNTDNNVVSAYESLVKVGNDA
KIPLVASDTDSVKRGAIAALGINYRDLGVQTGKMVVRILKGEKPGAMPSETSSKLELYVNPGAAAKQGVTLSDALVKSAA
QVIK
>SEQF1086_CAE42348.1 putative ABC-transporter ATP-binding component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLSAKDLHITFNAGTPIETRALRGLSLDIPNGQFVTVIGSNGAGKSTFLNAISGDLPVDTGTIRINDADVTRQPVWERAG
RVARVFQDPMAGTCEDLTIEENMALAQMRGARRGFSRAVKASMREGFRERLATLGLGLENRLADRIGLLSGGQRQAVSLL
MAALQPSRILLLDEHTAALDPRTADFVLQLTARIVAESQLTTMMVTHSMRRALDVGERTVMLHQGQVVLDVSGDERKGMD
VPDLLAMFERVRGEKLSDDALLLG
>SEQF1086_CAE42349.1 putative molybdenum-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAPSLQLDGTLWLRSGDQPWGGQHRIDLLAQIEATGSISAAARAAGMSYKGAWDAIDAMNNLAGEPLVLRSAGGRGGGG
TRLTDRARRLIATFRALQAEHQRFVQHLAASGLDAAGDIDIMRRFMLKTSARNRLLGTVEAVHAGAVNDEIVLRIAGGQR
IAAVITRASTEELGLAPGTQAIALIKAQAVLLGLPGPGLRLSARNQLPGKVAEVRPGAVNSEIIVDLDGGGTLAAIITEE
SARDLALAAGMPVCALFDAASVMLGVLD
>SEQF1086_CAE42350.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQIVKLLTVSVAAGLLAGCASGPTLRSDYDHSANFAQYRTFAFMSPLGTDRAGYSSLLTERLKQATRGQLEMRGYTYDES
KPDLLVNFNGKLQEKTQVTPAPPPMGPYYGYRAGFYGGWPGYGWGDDVYQYTEGTLNIDLIDARRRQLVWEGVATGEVND
LDKAQSAASVEQGVAQIFSKYPFRAGNGQPQTPPKP
>SEQF1086_CAE42351.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKRKARRGAGMLDYETVALVLQGGGALGAYQAGVYEGLHAAGIRPNWLAGISIGGINAAIIAGAPVDERVGRLRGFWEA
ICRPTGFAGLPWGDAWAALFANAPFGFGSNQSNGQLAAFNALTRGQPGFFEPRFPPPYLVQGGGAAATSFYDTTPLLQTL
RDYVDFDLLNRGDVRVSLGAVNVRTGNFAYFDSRETVIRPEHVMASGALPPGFPAIEIDGEFYWDGGLVSNTPLTKVLAV
HPMRDTLAFQVDLWPARGPLPASLEEVAERQKDIQYSSRTRIVTDTFRRQLKLRRSLQRVLDRLPARVRSSPELAEVRRE
ACTPLVNVVNLIYEANQFERHSKDYEFNTESMREHWRFGLADIERTLAQPGVLDKPSPDESFVTHDIHRADA
>SEQF1086_CAE42352.1 putative DNA-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLRRSASFPAAKPSAGAQPWELRYQAWVLVTPAGAIVHLSAAERICMLGLLAHPRRELTRAALVQSLPGLGAGAINVVI
SRLRRKVGETGEVLPLRTVHGMGYVFLAGLRSDTAPPQATPAAG
>SEQF1086_CAE42353.1 putative efflux system inner membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRFSPQRVSAFGLVATLSVLLAACGEKPQFNPGMPQVSVITVQPQRAAVVSELPGRVDAVRDAQIRARVTGIVQKIAFEQ
GGDVQADQLLFKIDPAPYQAAYDQATAQLKQAQADLFSAKLLAERYAPLVKANAVSKQEYDNAVARYRQADASVAAAKAN
LTNAKINLGYTDVTSPIKGRIGKPLVTEGALVEATSATQMATVQQLDPIYVDFTQSTADLAALRAFAAGKLQQVGKDAVK
VQVVLEDGSIYPEAGKLLFTGVTVDPTTGQVNLRAEVPNPDNILLPGMYVRVRVDQGVDDKALLVPQQALQRTADGMQSL
MLVKDNKVEQVPVTTGSVIHNQWVINSGLAAGDVVVVEGFQKIRPGAPVQASPWNKGGAAPAGQQPAPGQQAPAQQPAKQ
QPAKQEPAKQEPAKQEPAKQEPAKQEPAKQEPAKQEPAKQAPAAGQQS
>SEQF1086_CAE42354.1 putative efflux system transmembrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPQFFIDRPIFAWVVALFILLTGILAIPNMPVSQYPDVAPPAITITATYPGASAKEVAESVTSIIEDQLNGAKGLLYYES
VSDSYGQSQITATFAPGTDPDLAQVDVQNRVSNVTAQLPVAVMQQGLQYEQTSAGFLMIVTLSSTDGTLDQTALADYITR
NVKNPVSRVPGVGQFQLFAAPRAMRIWVDPDKLVGFNLSMAEVNQAISQQNVLISAGSIGAPPNPDSQRATATVIVNGQL
STIEGFGQIVLRANTDGSKVLLRDVARIEVGADNYQFGARLNGKPTAAFAIVLSPDANALATAEGVRQQMASLSQYFPSN
IRYDIPYDTAPYVKVSIEQVIHTLVEAMVLVFLVMFLFLQNVRYTLIPALVVPVAMLGAFVVMLALGFSINVLTMFAMVL
AIGILVDDAIVVVENVERIMASEGLSPKEATKKAMPQISGAIVGITLVLVTVFLPLAFMTGSVGVIYRQFSVAMAVSIFF
SAFLALSFTPALCATILKPIPKGHHQEKKGFFGWFNRKFDATTHNYQNWVSRILHKGGRMMLAFALLVVLLGWLYMRLPS
SFLPEEDQGYVVSNIELPTGASANRTIEVIEEVENYFRNIPAVENVITVQGYSFNGNGLNAAIAFTTLKDFSERKSRADS
AGAIAFTAFSKQLMGIHDAQVFTLVPPAISSLGNASGFDFRLQDRGGAGTEALGAATAELMGMAAKSPVLSQVRITGLGP
GSQLSLTIDRDKAAALGVNFDEAATLISTAVGSAFLNKFPNMGRMQNIWVQADQQYRMQVEDLLKLNARNNQGGMVPLST
FVSAKWVQGPVQVVRYNSYESVRIGGDAAAGYTTGEAMQEMQDLVARLPQGFGYEWNGLSYQERLAGNQAPILMGLALLV
VFLVLAALYESWAIPLSVMLVVPLGMLGAVALVTVLGMSNDVYFQVGMVTVIGLAAKNAILIVEFAKDQYARGQGLYESA
VEAARLRFRPILMTSLAFILGVVPLAIATGAGAASQRAVGIGVLGGMLAATPFAVIFVPTFFVVVLGLFKTRPRLLGAEL
RAFEEEQAAKRAAEQQQPQDGAATPAPQTGGQENKE
>SEQF1086_CAE42356.1 pyridoxal phosphate biosynthetic protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIELGVNIDHVATLRQQRHTAYPDPVQAALRAEDAGADLITLHLREDRRHIQDADVYAIRPLLRTRMNLECAVTPEMLEI
ACAVKPSDVCLVPEKRTELTTEGGLDVAGAQAAVTDAVQLLAEAGIRVSLFIDPDARQIEAAARAGAPVIELHTGAYAEA
RDDAAVQAELARVRAAVAEGLRHGLRVNAGHGLHYGNVQAVAALDGIAELNIGHAIVAQSIFDGWDKAVRDMKALMVQAR
LAAVRGHA
>SEQF1086_CAE42357.1 putative holo-[acyl-carrier protein] synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSVSAAGATPPASPGCIAGIGMDLLRIERIERALARHGDRFAQKILGPKELAKFQARRRRDPARGVRFLATRFAAKEAF
SKAIGLGMRMPMSWRRVQTLNAPGGRPVLVIGAELADWFDARFGAAHVSITDESDMAAAYVIVERKPAPDGRP
>SEQF1086_CAE42358.1 putative beta-hexosaminidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSKKKTKPVLPPGPVMVDVAGTTLTKDEKRRLRNPLVGGVILFARNFTDRRQLCALTRAIHKARKEPLLIAVDHEGGRV
QRFRDDGFTALPPMQELGKLWDRDPLAAMRLATEAGYVLAAELRACGVDLSFTPVLDLDYGVSKVIGNRAFHHDARVVTM
LSRALTQGLALAGMAACGKHFPGHGFVGADSHHEIPVDPRPLARILKDDAAPYAWLGDLVMPAVMPAHVIYPKVDAQPAG
FSRRWVSEILRERLGYDGVVFSDDLTMEGASVAGDILARAEAALGAGCDMVLVCRPDLADELLDRLQVQHPAASVERIRR
LLPRFAAPDWDTLQNDSRYQHARRLQSQIVSG
>SEQF1086_CAE42359.1 putative excinuclease ABC subunit C [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPDDFNLKSFLADLPHLPGVYRHLDAAGEAMYVGKARDLKKRVSSYFQKNLASPRIAQMVAKVASVDVTVTRSEAEALLL
ENNLIKSLRPRYNILFRDDKSYPYLLITGHAWPRIAYYRGATSKRGQYFGPYPNSWAVRETIQILQKVFRLRTCEDTVFA
NRSRPCLLHQIGRCSAPCVGVIEAEDYAHDVQRAVRFLNGEAREVMDEIEARMLQASTELRFEEAAVLRDQMGSLSKVLH
QQTMENVGGDDTDVIAVASAGGKICVNLAMVRGGRHLGDKPFFPTHAEGEQPAQVLEAFVAQHYADGAMPPVLVCSHALP
DSGLVGLLAEQGGTRVARVLTRPQGVRRSWLEQAQKNAEMALARALTESGARAGRTLALAEALDLDTDEESLDALRIECF
DISHTAGEATQASCVVFLHHDMQPSLYRRYNIVGITPGDDYAAMRQVLTRRFGKVTDGEAPMPGLVLIDGGKGQVEVARQ
VFVELGLDIQSLVGVAKGEGRKVGLETLVFADGRPPVALGKESAALMLIAQVRDEAHRFAITGMRARRAKTRNVSRLEEI
EGIGARRRQRLLARFGGLSGVSSASIEDLASVEGISQELAVRIYDALHG
>SEQF1086_CAE42360.1 putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPINVPIFLTWLRIAMIPLVVGLFYLPESWMSVPMRDTFAAWAFIIAALTDWFDGWLARRWNQTSAFGAFLDPVADKLMV
CAALIVLLDLSRVDAFISLIIIGREITISALREWMAKIGASASVAVHRLGKFKTAAQMVAIPCLLYDQPLFGLSSRLIGD
VLIVVAAVLTVWSMLYYLQRAWPAIREKSQ
>SEQF1086_CAE42362.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLSNAPLGQHVAYPSQYDPGLLFPIPRATNRASLQLGAALPFTGVDLWNAYELSWLDARGKPRVAMATFSFPADSPNIV
ESKSFKLYLNSFNQTRLPNAQALRDRLERDLAAAAGAPVGLEFISPQRFGELNMAELDGIYIDKLDIEIDTYEPAPQLLQ
CAPGDEVEETLATRLLKSNCPVTGQPDWASLQVRYRGRPIDRAALLKYVVSFRQHAEFHEHCVERIFGDIMRACQPRQLT
VYARYTRRGGLDINPWRSNFESAPPADVRTARQ
>SEQF1086_CAE42363.1 putative isocitrate lyase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNRETEIRNLQKDWAENTRWQGIKRAYSAEDVIRLRGSVAVEHSLARRGATRLWDSLHSEPFVNSLGALTGNQAMQQVK
AGLKAIYLSGWQVAGDANLAGEMYPDQSLYPANSVPQVVRRINNALARCDQIQWMEGKNPGDQDYIDYYAPIVADAEAGF
GGVLNAFELMKAMIEAGAAGVHFEDQLASVKKCGHMGGKVLVPTREAVSKLVSARLVADVMGTPTILLARTDADAADLVT
SDVDENDRPFITGERTVEGFFRTRAGLDQAISRGLAYAPYADLIWCETSTPNLEYARKFAEAVHRQFPGKLLAYNCSPSF
NWKKNLDDGTIAKFQRELGAMGYKFQFITLAGFHALNYGMFELAHGYARRQMSAFVELQQKEFAAAELGFTAVKHQREVG
TGYFDAVTQTIEGGQSSTTALTGSTEEVQFEQGGQAVKAA
>SEQF1086_CAE42364.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MACFMALVLARFGFGFCMLLAALMLLVAATLLATRLVGWAVRAFALERSQALASGVAIFLLVALALWGCHAVGEILYGAI
GATALVGGAPHWLAGNSHVSAAALMGATTAAAMLAGGPAFWRWLRARRAAAAEQPAPRKAAPPKGAKPAARAAKAAAKTQ
IAPRGQRIPWLGWTAFFLLFIGAAVLAFAYIVSPIEAGARCELSIGCIRPG
>SEQF1086_CAE42365.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWQRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE42367.1 putative ABC-transporter permease component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSEFMQFIFSGVTVGAVYALVALGFAIIFNATGVVNFAQGEFVMLGGMITVFAHGAGLALPLAALLAIAVTAATGVALNR
LAIEPARGAPVVSLIIITIGASIFIRGAVQSLFGKQIHSLPAFSGDDPIHVLGATILSQSLWMIGGAVAVFIVLWLFFTR
TLIGRAVLATSNNRLAARLVGINTRFIMTLSFALSAAIGALAGVLITPITLTSYDVDLTLALKGFAAAMLGGMGSPKGAL
AGGILLGLLESLTAGYLSSQYKDAAAFLTILAVLFFMPQGLFGHKSTDRV
>SEQF1086_CAE42368.1 putative ABC-transporter substrate-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTSKAIVAGLLALGCALPAAAEIRLGASVSATGPAGILGDPEARTLELLVQELNARGGVKGEKIKLVLYDDGGDANKAR
TFATRLVEDDEVQAIIGGTTTGTSMSILSVAEEAKVPFISLAGAIDIIDPVKPYTFKTPHTDRMACQKVFADMRKNGWTK
VALIGSTDGFGASMQAQCKAVAGQYGIELVGSETYEPKDADMTAQLTKIRGIPGVQAVLNPGFGQSAAVLARNYRQLGMS
LPFYASHGVASQGYIDLAGADVVEGFRLPGTALLVADLLPASDPQAAPSIAYKKAFEAKTGAPVGTFGGYAHDAFLILVD
ALNRADSTKPTAIRDAIEKTSKLAGTTGVYTFSPTNHLGLDLSAFRVLEIRGGKWKVVD
>SEQF1086_CAE42369.1 putative dioxygenase hydroxylase component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSFIRNEIDYRALIEPTRINSRLYVDPEIFQEELDKIWHRTWVYVGHVSEVPNKNDYVTKSIGTTPVLLLRDRDGEIRLL
LNKCPHRGNQLCAYKEGNRSTFTCPYHSWTFSNTGDLMGYALADGYEGASKAGVGLGKVARIGIYRGFVFGSFAETGPSL
DEHLGGAKAAIDQLCDNSPNGELDLRAGFLQHRAKANWKFMLENETDGYHPGFVHGSIFQVTNSPIANLYGKDSTALTRD
YGNGHTEFDLRPEWRRIDKPLYWFGSSVERMADYAVAMDQAYGAERARQIMIDGSPHTMIFPNLFIAEIQIFVLQPVSVE
ETIQHVTAVQFKDAPDINRRLRQQTMGSVGPAGLLLADDTEMYERNHRGAKIRDPEWLMLTRGLHRERKDENGYTVGHST
DEVPQRGIWRHYFKLMQE
>SEQF1086_CAE42370.1 putative dioxygenase component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTARPETRPAADDLQALDELTLHHRVSQFLYHEARLQDTHDYQGWESLWEDDAIYWIPANGDDIDPEQKMSVIYDNRSRI
RVRIEQLLTGRRHTQTPRSALARLISNIEIVDVAGQEVTALANVLIYEDNLRGETHWAARNEYRLRLVDGAFRLVRKKIA
LVNSAKPIFTLSFLV
>SEQF1086_CAE42371.1 enoyl-CoA hydratase/isomerase-like protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTANPETWIGEGPVLLDYADHVARITLNRPDAANGMNIEFMKAFHEAVMRCHREPDVRVVLLRGAGKHFCAGGDVREFA
SKGEGLGDFLREVTAWLQMAIGALIRLDAVVVAQVQGYAAGGGGLGLVCAADIVVAAQGARFLAGATRVGMAPDAGSSVI
LPHLIGFRRAMEMMLSNRTVGADEALEMGLVNQVVADAELDESAARLAATYAAGAPLAQAATKRLLWNTLQVERALPEEA
RTVSTLSATADSREGLAAVIGKRQPVFRRH
>SEQF1086_CAE42372.1 putative 3-oxoacyl-CoA or-ACP reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPRHALVTGGANGIGAATVAQLCRDGLRVTFCDRDAQAGASVAEATGARFVALDATDAEAVAGFCAGAAPFDILVNNVGA
DQHAFFSRTTPQDWRALLAVNLESAFAFTLGVLPGMQAARFGRIVNVSSEAGRLGSRGGAVYAAAKAGLLGFTRSIAREN
ARYGVTANAVLPGPVDTPMLARAVDVAGAQMRADLEALTLLRRLGRPEEVAAAIAFLCSEAAGFITGEALGVSGGMGCGA
>SEQF1086_CAE42373.1 putative ferredoxin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTIIFIASNEARHIVQADDGLSLMECARRANVPGIAAECGGACTCATCHVHVGQEWMQAVGEPGDMERDMLDFANDVRA
ESRLSCQITVAPALEGLTVRVAPQ
>SEQF1086_CAE42374.1 putative fatty-acyl-CoA racemase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAPALQGLRIIEMVGLGPAPFAAMMLADHGADVVRVHAAHRKGDFPLLDSRFDVLARGRRSLALDLRAPGASDLLLELVG
AADGLIEGFRPGVMERMGLAPEECLRRQPRLVYGRMTGWGQQGPLARQAGHDLNYLGLTGALHAIGPADRPPSVPLNYVA
DFGGGMLLAFGMLAALLAVRGGAPGQVVDAAMVDGAGLLAAMFWGFRAGGGWSDRREGNLLDGGAYFYATYACVDGRFLA
VACVERRFHDLLVERLGLDPAVYTHDRDPAQWPALRARLAALFATRPRDHWAALFEDSDACVTPVLDWREAAHHPHAAAR
AGYIDVEGVTQPAPAPRLSATPARQPAAAPAVGAHLVEVLHEWGLAPERVAGALDSGLIVQA
>SEQF1086_CAE42375.1 putative esterase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTARDPLAAIRARLAEVTACWQAAESLAQIRASFADYLAEVGPRGAAMARPRPQPLAPALAGAWIGQGARRALYCHGGGF
QIGGIASHASLIARLAEAGQARILAVEYRLAPEHRYPAAIDDAFAAYQWLLANGGAPAAIIGDSAGGALALQTAQRARDA
GLPLPRSLVLLSPWLDLSMQGRSYVELAEQDIFSKPAQLRAMARSYLGHLGPPPASPLWDDLSGLPPIVVHAGAHDITLD
DSHTLAARVRAAGGQVQLQVFPGMCHHFQIYEALAEAQESIDALGRHLRQD
>SEQF1086_CAE42376.1 putative acyl-CoA ligase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLHPEIELLDRDGILKIQRERLARLGQRLQHSPQWREHFASVGMTPGDLASPDAFEHLPFLQKADLRQQYPYPFLTVPLE
DVERFVATSGTTGLPVMFGLTRRDLHELLPSQTARLLAAAGVRRGARAYQGYGYGLWIGGLALDQGFKAMDCVNFPLGPG
RGDLAARWMRDHAYEVASMSPLWLMSLAQAARAQGINPKTDWALRTAILGGQSVSAEFRAQLEAEMPEGFVSHNIYGTTE
AGGPILAISTPYTHADDELHLINEDTVLTEILDPVTLKPVSEGEVGEIVITTLTKEASPVIRWRTHDLVRLSSHPYDCPS
GRRGMRKIGRIIGRSDDMIKFKGVIVFPSQIEDVITGVAGVVKEAWQIYIDKECMTIGTMTVAIEASAQAGRPAEQLSNE
VGREIHARLGMKVCVECHPEGTLPRYEAKAVRVLHRPEA
>SEQF1086_CAE42377.1 putative thiolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATGIKDRVAILAMGCSRFGERWDVGQEELMVEAYAEALASAGIEPRAIEAAWYSSHYDDIGAGKAGTPMAMALRLPDIG
VTRVENFCAGGTEAFRGAVYAVASGAADIALALGVEKLKDTGFAGLPLASRGTLAPMYLLTHSNPGNFAQLARAYQARHG
VAREDLKAAMAHTSMKSHANALHNPKAHLRKAISREQAAGAPLVADPIGLFDCCPVSDGAACAIVTTPEIARSLNRGPLV
LVKAIQLATSNGWELQQSDWDGSYVHTTRVAARKAYAEAGIDDPRAQLSLTELHDCFSITELVTLEDIGLAEPGTAWRGM
LDGRFDADGALPCQIDGGRKCFGHPVGASGLRMLYEAWLQLSGRAGARQLPAPSLALTHNLGGAPAQNVCSITILGAA
>SEQF1086_CAE42378.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDVLPGRPRARRRRRRRQSRANILAIGVHLPRLRLSRGAMANALGWLSGGAGAGKGSRTLAYWDEDSVTMAVAAARHALA
RQAAPAIDALQFASTTPPFAEPQNAAFVRAALRLPATTLTQDVHGTPRAGLLALHMALESGTRTLVAAADLPTALPGSTA
EARAGDGGAAVLTGDEPGLLRYLGGASLSAPFTDRYRAAGHDYPQEWEERWLREAGYLELVHDAIGRALQAASLRPEQVD
HFVLPCPVPGVAAAVAAKAGLGQARLASALAENCGDTGAAHAFVMLGRALEDAAPGQKVLVAQFGQGATALLFEADEAVA
GLAAPVSPALRDGLAEDNYMKLLAFRGRIAWDRGLRGRFLVNEALSTAWRNADALLDFVGGRCRETGQVQFPPTRLAATG
GFHLDTQEPWPLADRGGRIATFTADLLAFSPCPPNCYGLVDIDGGGRVLMEFTDPQASQLEAGAAVAFALRIKDLDPQTG
YRRYFWKALAAPTAD
>SEQF1086_CAE42380.1 putative lysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLSKRFPCVSCAPWSPSGDTASFTGAAEQLGMSQPSVSHLIRRLEAEVGQTLVVRGREVTLTRQGQALADIARRAILSID
GAVRESRDQSALKSGSVSVAVGHVSAATLLPRILVAFNQRHPNIELIVVDCVVEQIRNKLLSHEADVGLGAVVGSDDSRL
STELLWDGGVSLFMRDDHYLADREAIDAAILAELPCIQLNPNAPPWLVISRLLVANGIHPRVDQRVVLVSTAVGMIQAGM
GVAMLPHAAAAQAPRGVRAVPIRNPFLSWPISLVRLSNHPLSPAAQAFAAIARDVLRRF
>SEQF1086_CAE42381.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQACHPIRRWRPTTNKGKCMKNVLWMALLASVLSEGALAAEFPTHPVTLVVPLAAGSTADILARAIQPGLSKALGQTVVV
ENRPGAGGQLAMSYVAKQAADGYTIVMGSNGTWAINLGLYEKLPYRPVEDFAPVAYLAGGSNILIVKPSSPYTSVAALIA
AMKAAPGKLTYSSGGNGTTHHLSSELLKSLTDTQAMHIPYGGAPQGVSAVMAGETDFGFYNTPSVSSMVKERKLRALAAT
GTIRTPMLPEVPTMMEAGVAGYVMSVDFGLLAPAGTPDDVVLKLNRAANAAMAQPKLQETLKNYGFEVFEQGSPGDMAKR
VNADIDKWVPIVRQAKAKVD
>SEQF1086_CAE42382.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI
>SEQF1086_CAE42383.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVSEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE42384.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MITPPDHPPRIAIQYCTQCQWLLRAAWMAQELLSTFGADLGEVALVPGTGGVFRIHYNGAPLWDREVDGGFPEAKVLKQR
VRDHLDPGRPLGHIDGRPKP
>SEQF1086_CAE42385.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGAPDLCTEEDITQLVHQFYAEVRRDAELGPIFNTHVDDWDVHLAKLVDFWSSILRGTGRFRGTPMPRHVALPGLHAGLF
ERWLRLFRATAAAQPNQAMAEQACLMAGRIAQSLWYGYQLHRSPDQAPTDLAHG
>SEQF1086_CAE42386.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAELLQIDEPAAARAAPQWRAFLELGFRPLYLVGAAWGALSVALWIGAPQWLGGAMAGVIWHAHEMLWGFIGAIAVGFLL
TAAATWTGVNPLRGAPLAALAALWLAARAAFLLPGMAAFWTGVACELLFFAWAAAALGRAIYRRGASRRNDGVPLLVLGL
GAADALYLLAARAGDYPLLLQRFNAGLLCMAVIALLIARRIIPFFAMRAIAGLQIPMHTRSGQWQLAAGLVAVAATLAQA
GALTAVALAAAGLIALAQWLSWRPWATRGVPLLWILYAGYLGLAAGLLVAAASAAGGIARAAWPAHVIGMAGFGLLIIGI
ITRTALGHLGRPLRTDRLMLACYLLVIGAAALRLAALWPGPHTLAALHGATAAWVLAFVLYLWRFAPLLVRPRLRAPTAA
ATPVRSRP
>SEQF1086_CAE42387.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTYPILLALHLLAAFVFIGTVFFEVLILESVRRQVPREAMNAVERGIGNRARAIMPWVLLALFGAGIGMAWQHRGALEQP
LASSFGLLLSLKIVLALSVLGHFAAAMRWRRRGQLRGRRSRRLHLSVFCHVVAIVLLAKGMYYIDALR
>SEQF1086_CAE42388.1 putative exodeoxyribonuclease III [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLATWNVNSLNVRLPQVLDWLAANPVDALCIQELKLTDDKFPLDAFTEAGYHAAWAGQKTYNGVAIISREPGFALVRNN
PRYEDPQQRILAVTLPSPAGDVRVICAYCPNGQSVDSDKYVYKLAWFDGLRDWLEEEMRTYPRLAILGDYNVAPADADVH
NPEKWEGQVLVSEPERAAFRALLDLGLTDSFRLFEQPEKSFSWWDYRQFAFRRNAGLRIDHVLLSDALKPHCVACVIDKA
PRANEQPSDHAPVIATLAFD
>SEQF1086_CAE42389.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHILVAGFQHETNTFAPSKAGYDNFLRGEGFPALVRGDDLLALRAVNIPAGGFLNAALADGHSVHPVLWAGASPSAHVTR
DAFERIAGEIEAAARAGRYDAVYLDLHGAMVTEHHDDGEGELLRRLRDAVGPATPIVASLDLHANVTRAMLAHASALVAY
RTYPHVDMADTGARAAALLQARAQAGKHWHGAARRLPFLIPINGMCTQLEPARGVYALLAELERSEPGIASLSCALGFPA
ADFPECGPVVWAHGPDRDAVERAVQTLADRIAGLEAQWAPDFLAPDEAIRQARQLAQGARRPVVIADTQDNPGAGGDANT
TGMLRALIDADADNAAIGLMCDPQAVAQALAAGVGKCVRLRLGGQSGVAGDAPCEAEFIVEHQSDGKTRYDGPMMHGMAA
DLGPTVCLRHRGVRVIVSSNKSQTLDRNLIRLGGIDPEDLAILVVKSSVHFRADFEPIAHAVLIAKAPGPMQADPADLPW
TRLAPGMRTRPRGRPFVPARP
>SEQF1086_CAE42390.1 putative oxidoreductase, partial [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
TAGRTDCAPAAGRLAGRVALITGAAGGIGSAAALRFAAEGAALALLDRRPDAIEQLAGRICGQGGQAIGVAADVTDDDSV
RQAVRRAVEHFGRIDTLFNCAGGSVAGDTAVDKVDLALWNRTLRLDLDGTMLCCRHAVPAIVRAGGGAVVNMSSGAGLRG
SFGGHAYTAAKGAVIALTRALAAEYAPHGVRVNAICAGRIRTERILRNLDAGAPAQAGAAQRYPCREGDPIDIAHIALFL
ASHESRMITGEAIAANGGYSAF
>SEQF1086_CAE42392.1 putative hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMQHYYERDGVRLSYYLDDYTDPWTQAPTLLLLLHGAMANAQRFYSWVPGLSRDYRVVRADLRGHGLSDVPPADKPLDLQ
VLTEDILALLDHLGCERVHLAGNSAGGYVGQHLAMQHPQRIETLALFGSAPGLRNSQASTWLERVAEKGLRQFLADTIDD
RFPPELVGTPRCEQFLDALSDHDMAYIGRFVGYMAQQEWGDQLHRITCPTLVVIPGAGRIGAMDAYQPMRDHLKRAEILV
YEGERHSICEYLPQRCVADLRSFLARHGGPAWP
>SEQF1086_CAE42393.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAKQSLVCLTFDFDAISVWLARGMDSPTPVSRGEFCAVAADRVLDLLERLGLPSTWFIPGHTLASYPEHCRRVHEAGHE
IGHHGWTHVAPNLMTREEELDGLVRANEAIRALTGRVARGYRSPSWDLSPHTLALLLEHGFDYDSSMMGHDYQPYPVRQG
DSFPLDEPAVFGAPTRLIEVPVSWSLDDYPHFEFVRAGQSVIPGLMNANSVMDNWIEDFLYLKENFDWGVITYTFHPFVI
GRGHRMRMLERLLRRLIDEGATFVRMEEAVDAYRQRQALAAGAA
>SEQF1086_CAE42394.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKIKSMLLAVLAVSMAGVSAAALSQGFPERALRVVVPYPPGGTTDVLVRLLQKPVADAAGQSVVVDNRPGGASVIGTSHV
AQAAPDGYTVLGGDLSMLVNPSLMKDLPYDTLRDFRGVTMLARAPLVLLVHPSVPANTLDELIALAKAKPGTLNFASGGY
GTSTHMAGEMFRRAAGIDVVHVPYQGVAPAMSALLGGQVQMYFGGTTTGLPHIQSGKLRALAVTGEAPSPLLPEVPTFVS
RGIQGVNADTYWGVYAPARTPDAVIEKLNAYYTGALRDPAVQQRTRDLGLTLIGNSAAEHTAQMKTMIGDWGAFVKEADI
RLE
>SEQF1086_CAE42397.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQNEDSFFGSLGAMLGAVIRAIVDGLRYVFGGLGRALGDFFGGLASALGMSPSVFNFALLVLGLLLLWTAVRAFMGRAIV
AGIFWLVLAMLLLGGLIG
>SEQF1086_CAE42398.1 glutathione reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAFDFDLYVIGAGSGGVRAARFAAGYGARVAVAESRYLGGTCVNVGCVPKKLLVYGAHFHEDFEQAAGFGWNPGRPEFDW
PTLIANKNREIERLNGIYRNLLVNSGVALHEGHARIVDPHTVEINGQRHSAQHILVATGGWPFVPDIPGKEHAITSNDAF
FLPELPRRVLVVGGGYIAVEFASIFDGLGAQTVQVYRRELFLRGFDGSVREHLRDELVKKGLDLRFNTDVERIDKRADGV
LAVTLSDGSVLETDCVFYATGRRAMLDDLGLENTGVRLAESGYIEVDDEYRTSEPSILAIGDVIGRVPLTPVALAEGMAV
ARRLFRPQEYRKVDYDLIPTAVFSLPNIGTVGLTTEQALERGFRVTRYESRFRPMKLTLTQSQEKTLMKLVVDADSQKVL
GCHMVGPDAGEIVQGLAVALKAGATKQVFDDTIGIHPTAAEEFVTMRTAT
>SEQF1086_CAE42399.1 transposase for IS1663 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPVVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF1086_CAE42402.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAVVRYDIPGALMSDSLVFHTDLPGLADGPWHGGELAMQERAGARERMAQLGPRVIRDYMPQQHRDFFAQLPFMLLATVD
AQGDPWASVLEGPPGFAHSPDERTLRLDAWPAGDDPARAGLAHGAGVGMLGIELSTRRRNRVNGHVAALDGQGFCVAVTQ
SFGNCPQYIQTRHARQAAPAPQPARWLAGLDAAARTLVGQADTLFVASYARQAGPHAVDVSHRGGPPGFVHLRGDTLTMP
DFSGNRFFNTLGNLLANPRAGLVFVDFARGDLLQLCGRAEVLAEAGAPAAYPGAQRLWRVHVERAVRRPAALGLRAGFGE
YAAQLAAVGQWAGEPPA
>SEQF1086_CAE42403.1 putative lysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDKFQEVSLFLAVAEARSFAAAGRRLGLSASTVTRAVAALEARLGILLLVRTTRHVRLTDAGEQFAHDCRAVLDSLAQAE
EAAAGGRVQPRGELSVTAPALFGELHVMPAIVDYLRQHRQVRLRALLVDRVVRLLDEGVDVAVRIGRLPDSSLTAIHVGD
VRRIVCAAPDFLARAGVPSHPDMLPRYCTVSVVMEGQMDRWRFVCDGHARDLDVQAQLTVTSSQAAVRAAVQGWGLAQVV
SYQAAGALREGALQVVLREFEPPPLPVHVVYPEGRKGAAKVRSFVEFCVERLRAELGELPA
>SEQF1086_CAE42404.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIWKLIPIALLAGLTACASGTRTDSSPPASSQTSSSAAPGSATTPSGPDCDAQPVQNLVGQKYSDSVGNDALRRSNSGSM
RLLKPGQVMTMEYNARRLNIILEGNGSISALRCG
>SEQF1086_CAE42405.1 putative oxidoreductase subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPTLNINGKDTVLDAPGEMPLLWALRDVADLTGTKYGCGMALCGACTVHADGQPIRACITPVQAVAGRRIVTIEGVAADR
TGQAVQQAWRELDVAQCGYCQSGQIMSAAALLRANPAPTDRDIDDAMNGNICRCATYVRIRAAIHAAAAALA
>SEQF1086_CAE42406.1 putative exported oxidoreductase subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRIAIQNLSRRRFVQGAGGLLLGLSLPPLARRAMAAGPQAGDGFAANAFVRIGADGRVTVLAKHLEMGQGAYTGLATLLA
EELDADWRQVRVEGAPADSARYGNQALGGLQGTGGSTAMFDSWEPMRRAGATARAMLVQAAAQRWQVPADTIEVAEGVLS
HPASGRRAGFGELAEAAARSPVPEDVPLKDPARFRLIGKHRLPHVDSAAKSDGSALYTQDMKLPGMLVAVVAHAPRLGAA
VARVDDAAARAVPGVRAVVRFGGAALRHAGVAVLATNTWAARAGRDALRIEWDEGPAYRQGSADILARYREAVGRPGSMA
ARKGDIDAAFAGAAKVIEAEYTYPYLAHAAMEPLNCLVRLDDERCEIWNGEQFQTADQRAIAQYLGMPAERITLTQLYAG
GSFGRRASSHADYLLEAVAIARTARAQGLNAPVKLVWMREDDMRAGYYRPLNLHRARLALGADGALQAVHVRMAGQSILL
GTPLADWVRDGVDPVSVEGLSDLAYAVPNLQVELHTPTDVPVPVLWYRSVGHTHTAFSAETLIDEAAVAAGQDPVAYRLA
LLAAHPRHREVLQLAAVRAGWREPLAAGAPGTRRGRGVAVHESFRSVMAQVVEVTIAADGALKVDRVVCAAVHCGLAVNP
DVVRAQMEGGIGFALSTALHGAITLKDGAVEQSNFHDYPVLRLAEMPAVEVHIAPSTQPPTGVGEPGVPPLAPALANAIA
QATGQRLRTLPLGTTVKA
>SEQF1086_CAE42407.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRSIAMQAADLYVLQTAQSWLDAGQAAVLLTVARTWGSSPRPPGAMMAIRADGAVAGSVSGGCIEDDLIDQIRQRGIAAL
CPGARPALATYGVDGEQARRFGLPCGGTLQLVLEPLGAHSRLADLLARLRAHQTVRRSVRLADGAVTLEPAAADAEPRLD
GAGFASVLGPRHRLLVVGAGQLSRYLCEMAIALDFDVTVSDPRQEYRAGWQVEGVALTTAMPDDMVIAARPDARTAVIAL
THDPKLDDLALIDALQTPAFYVGALGSRANHARRVARLREHFGLTPAQLARLRGPAGIYIGSRTPPEIALSIMAEIVAGK
NGAPLPPAASVAAGKARQPGGAGVIQAGLCATL
>SEQF1086_CAE42408.1 putative araC-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSALPDSPSASPPPRHDELASLIERHTPADGSTATALPGLNFYRSSSPTELNVSFYRPSLALLAQGAKRVQLGDDVYEYD
TSHYLLTSFDLPVASRVTLATPGTPYLCFALDLDPHRIAGLISELGAPPAGQPLRRGLTLARLTEPLLDAVLRLARLLDT
PADIPVLAPLIEREIHYRLLSGPMGGRLRHIARAEGTALQIARAIDWLRRHYAQPLRVEHLATTVNMSVSSLHHHFKAVT
ALSPLQYQKQLRLHEAHRLMVAETLDAGAAAHRVGYESASQFSREYSRLCGAPPLRDAARLRGTAPADAQSPGLARASAS
ATVS
>SEQF1086_CAE42409.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTGTMTIRIDEELRAYIDPLTPDEYAALEQSLLAEGCRDALVLWGDLLVDGHNRHAICSKHGIAFNTVQNTRLQSMDDVR
LWMIDNHLGRRSVSDFQRGVLALRKKEILESRRQAGEGDAAPAGGDGPAPLTRQTLARQARLSSATLGQIEKIRQQAAPE
LVRAVQSGEISINAAAAVATLPAPQQAAAAAGGRGELRAAARQVREARLPVRRAPEAEPAPAAELRVVDDYPAEVARLDR
LVAQLAEERDALKKKVVQLTVALAEARAKPGD
>SEQF1086_CAE42410.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAEIPLFPLSNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPA
LLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIMPMAAPFRLDDCG
WVADRWAEMLSLPPADKARLLLLPPLDRLREIDAVLAADGHA
>SEQF1086_CAE42411.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFDGDCAEVMRLYERILGGKLDALITYGESPPEMPCEPQDRDLIMHARLRLDDQLLMASDSNSQCPYEGKKGFSLSLVYP
TVSDAQRIFNALAEGGQVTMPLQKTFWAEIFGVLVDRHGTAWMISGGQMNS
>SEQF1086_CAE42412.1 putative transmembrane efflux protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPHTLDERKRWLALMVLCLGVLMIVLDTTIVNVALPSIKADLGFTEASLVWVVNAYMLTFGCFLLLGGRLGDLLGQRRMF
LAGLTLFTLASLACGMAQGQAMLVAARAVQGLGGAVVSAVALSLIMTLFTEPAERARAMGVYGFVCAGGGSIGVLLGGLL
TSSLSWHWIFLVNLPIGALVYALCLPLLPASQGPTGHPRLDLAGAAAITASLMLAVYAVVNGNEAGWTSPQSLGLLALAV
ALLALFLRIEARVPAPLMPLSLFALRNVATANIVGVLWAAAMFAWFFISALYMQLVLGYTAMQVGLGFLPANIIMAAFSL
GLSARLVMRFDIRAPLVCGLLVAALGLALFARAPVAGSFAVDVLPGMLLLGLGAGIAFNPVLLAAMSDVDPSEAGLASGV
VNTSFMMGGALGLAVLASLAAGRSASLRAGGADVLTALNGGYHAAFAVGAVFAALAALLAGVLLRRPQPGASAPAADAH
>SEQF1086_CAE42413.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHYHGSCHCGTIRFDVEGELTGAMSCNCSICRRKGALLWFVPRGHLRLATPDEQIATYTFNRHLIKHRFCPTCGIHTHGE
GVDQQGRAMAAINIRCLDDVDLDAVAVHQYDGRAA
>SEQF1086_CAE42414.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE42416.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE42417.1 putative ABC-transporter membrane-spanning ATP-binding component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPGYWGPAFARETPTMRMLWTYLRPHGGLALLALLLAAASQVLALIDPIIFGRIIDEYAIGRAGKTGDQLLAGVLGLLAL
ALAVAILSRLAKALQEYVTRLVVQKLGTQIFNDGLRQVMRLRFQEFEELRSGETLSLLQKVRSDSERFINAFINTAFAAG
VGVAFLCWYSVTRHWLLVPVFFVGVLLLGGLTGLLSRQIRSQQRSIMRETNRNSGFITESLRNIELIKSLGLTYPEIRRL
QAQTQQIFALEMQKIKRIRLLSFLQGMILSVLKLSVLFALLWLILRDVLSTGELIAMQFISVAIFAPLQELGNLILAYRE
ADASLNHYAALMARPVERNPESAQDSGPIQRVRFGEVRFRHQGAAENALDGVSFEARLGDTVAFVGPSGSGKSTLFKLLV
GLYAPDHGEVYYNDVSTRDLRFNPTRRQIGFVTQETHLFSGTLRENMQLVKPDVTDEEIVAAMRQASCANVLARSPAGLD
TTIGEGGVKLSGGERQRLSIARALVRQPRLLIFDEATSALDSLTEEQITQTIRDVSRRAGQITILIAHRLSTIMHADTIF
VLEKGRVVEQGSHAELLAGKGLYYAMWRQQIGERPAVRAPEPQSEPDTAGRGPEAGVSLL
>SEQF1086_CAE42418.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKSRRLQLAGAALMMAAACGQAVAGGGHHGHHGYYGGYGHSHGSSSDGWWIAGALALVAAGTYLAVSSQPSYAPAAQYSA
GGITYTTPGGYAASPYDSTVYDPPSYDPPTAYDDAGYAPAGHGQPAYDDGTVAGYPVAPQGAGIARTASRQPTGEAACRR
EAMNQSGYDPATPSAWTTGVSVDSYQRALSACLAGRG
>SEQF1086_CAE42419.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNQPSSLAADLRGAWHAQAQSHPLITLGLAASAAGVVLLLVAGIVNALTGENRVHVGYAVLGGTAGFAATALGALMALGL
RAISARTQDAMLGFAAGMMLAASAFSLILPGLDAAGTIVGPGPAAAAVVALGLGLGVLLMLGLDYFTPHEHERTGHQGPE
AARVNRVWLFVLTIILHNLPEGMAIGVSFATGDLRIGLPLTSAIAIQDIPEGLAVALALRAVGLPIGRAVLVAVASGLME
PLGALVGVGISSGFALAYPISMGLAAGAMIFVVSHEVIPETHRNGHETIATVGLMAGFAVMMFLDTALG
>SEQF1086_CAE42420.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHTRTRHATAPLPAMPTSLPARAYALPLILPLLLAACSDAVQTQYRDLDEARVAGAIQRGWLPAWLPARTGAITEAHDLD
TNRRAARFVLPDGARIEPPGCAPASGRLPSPALALPGWPASLHQDGAAGRYRLYRCADGYAAFDANHGYVWN
>SEQF1086_CAE42421.1 putative gntR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRSSTDLSAEGISQAIAAAIVSHRLPPGTRLREEALASVYKVSRTKIRAALLMLSKDKLIQIVPDKGAFVSKPDAHEARE
VYAVRRILEAALAREFVACAAPQDYERLEQHLHQEREAIHEGDVQRRNQLLAGFHLQLAEIVGNSVLTAMLHELLARTAV
ITVMYQSAHDASCSSQEHYAFLAAARDGDAERACALMDEHLLHLQTALDFDGAPAPNRDLVAALLS
>SEQF1086_CAE42422.1 putative sulfate transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPHSVACLDLRVIALLEAKRAGLLRRAHWLPNIVSGLIVGVVALPLAMAFAIASGAKPEQGLYTAIVAGLLVSLCGGSRV
QIAGPTGAFIVILAGITAQHGVAGLQLATLMAGCILLALGAARLGAIIKYIPAPVIVGFTAGIGVIIWVGQWKDFFGLPS
PAGTHFHEKLWQLVHSLPQLHLATTALAALSLALLLLNNRLPYLRRVPGPLVALVVATTLQAALGLDGVATIGSAFGGIP
QGLPSWQWPEITVSRVIELIGPAFAIAMLGAIESLLSAVVADGMAGTRHDSNQELVGQGLANIVAPLFGGFAATGAIART
ATNIRNGGTSPLAGVVHCITLLLMVLLLAPLAENVPLAALAAILFVVAWNMSDAPHFVRMIKRAPRADVAILLVTFVLTV
FADLVVAVNIGVVIAILHFLRRMASSVQVQAQSPAELGDELGHRGYGPLPDDVLVYAVEGPLFFGAAENFERALAATHTD
PRTLIIRLRWVPFIDITGLQALEEVITDLQRRGVRVILSGANPRVKAKLHRAGLVGLAGADNVFDRFEDAVLSCRAPAAP
ATA
>SEQF1086_CAE42423.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTSPSSASPDGHGARLDAQSIRFERLLPGPIERVWAWLADADKRARWLAGGELPRQPGQTFELHFNHAALTAETAPARYA
QYDRPIVAHHTLLRCEPPRVLALTWGGAAGEAPSEVLFELSEAGEQVRLVLTHTRLADRAAMLDVAGGWHAHLAVLAGKL
AGQAPPPFWTTLAQAEQDYEQRL
>SEQF1086_CAE42424.1 putative ArsR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVEYQAPALDRVFHALSDPTRRAMLRRLADGEHNIRALAAPFAMSFTAASKHLKVLESAGLVSRRVQGRSHLCRIDAAPL
AAIDAWLKFYERFWNARLDMLETLLRADAASSVPSHPDQDPTP
>SEQF1086_CAE42425.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTPPARSSAAAPAQYADVHYADRPMRIEYALLAPERRDAPLLVFLHEGLGSLAMWRDWPRRVCDAAGCRGLVYSRYGYGR
STVRPLDESRPIDYLHQQAAQALPALFAALGIDARRDKPVLFGHSDGASIALLYAALCPDAVAGIAVAAPHIYVEDITVA
NIAVALRAYRETTLRDRLARYHDDVDSTFASWTDTWLDPAFRQWNIEAYLPAITCPVLAMQGVDDEYGTLEQIRGIRRLA
PQTRLLEIQDCGHSPHKDQPELVTRALAGFVGGLRRPA
>SEQF1086_CAE42426.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQISRRFPLLARRAALALCLAGAVQAHAQEAAVQRKSDYPFAATVARLQDALRAKGMTIFAVIDHQAAAKQAELDMPPTQ
VVVYGNPKAGTPLMLAAPDFALELPLKVLVRETASGEVLVVYHPAGTREGMLGLPAGMAQQLAGAERIVDAAVRRAPAD
>SEQF1086_CAE42427.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPAKSKAQQMAAGAALAAKRGESRVSDLKGASRDMYDSMSERELEHMAGTARKGKPYHK
>SEQF1086_CAE42428.1 putative araC-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLGAMKRLALLVPERANIASLENARQGFLAANGFLRERGRAPSFDVRLVAATPQVRLDHGRITVQADTVLEAVGEVDLCV
VPPIQGDPQPALQENGALIDWLAGYYKNGGEVASLCVGAALLAAGGVLDGQRAVVHWAAQSDFGRLFPAVRWVSDRVVLE
ANGIYTSGGAFSAAHLVLHLVDKYTDRETAIWCAKLFQLDWSRQSQLPFVVFVGQKTHGDGVVRQVQEHIEANYTERLTV
EQLAQRVALGRRTLERRFRHATGNSIVEYVQRIRIEAAKKQLESSRKSVAEVMYEVGYNDTKAFRDIFNKYCGMSPLMYK
ERYL
>SEQF1086_CAE42429.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDQYVDGFLLSVPNDKLDTYRQMATKAGAIWKEHGALAYCECTGDDLDIEGMVSFKTSAAAREGETVVFAWIVYPSRAER
DRINAAVMADPRLKEQCVDGVFDCKRMAYGGFKTLVNL
>SEQF1086_CAE42430.1 putative oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQTTTSLIASVRRIAAFSDGARGGNPAGVHVAEVLPDAMTMQQMAAEIDYSETVFAAPAYGGWRVRYFAPEAEVPFCGHA
TIALGAVLAEQEGDGVFALTTNHANITVEGRRQGGLYSAALQSPRTRSAPLEAAVRDEALALFGYTPADLDSRLPPAYAE
AGAAHLILPLNSRERLAAMRYDLAAGRAFMKRTGVVTIAWVHAESATLLHARNAFAAGGVYEDPATGAAAAALAGHLRDS
GWLRAGAIEILQGFDMGVPARLRAEYGPEPGSSVRVAGTAHALARQPALID
>SEQF1086_CAE42431.1 putative lysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRNIDTALLRAFLAVHDTGSLTAAAALLHLTQSAVSQQLQRLEALFGRTLLERRRSGAALTGDGARLLGRAREMVRLND
ELMQHMTGAGCVGAVRLGVPHDLIGTHLPGLLRAYSLRYPDVDISLISATSPELLEQVRRRKLDLTLAEEPIGAAAGGER
LAVDRVVWLAAPGGQAWRKNPLPVSLVSDACAFRPVLADALDGGRIPWRSVFENGNADATLTTVRLDLAVTASLLSVAPA
DLQVLDAASGLPALPDYAINLYIAPGERSQAVEEMARHIRQAYQERRPAYAAAA
>SEQF1086_CAE42432.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAPADPRLAQLRRMQRWALALLAAMIAGFVTSHLMGGQGAWAWVRAFCEAATVGALADWFAVVALFRRPLGLPIPHTAI
IPANKARIGDNLALFVRDHFLDPATLLEKLRVFDPAARLGHWLADPRQTRSLGQGARQVALQALDLLDEQAVSRAIQGFA
VAQLRRWDAARTAGEVLALLTRDGRHQELLDAALHRLGDYLGEEDIRQRASALLVKFARKEWPRIIAAVDVIGSVEGIAD
NLADRMARALVDELRDVLSRPDHPVRRNYEAWVADYIARLRDDPELAGQVEALKQRLIDDPRVQEYALGLWRDIHAVLRR
DLEAEDSALARHLEDALQALGQRLSRDPELRRAVNEHVLDSARKLTDSLRSGVTEHISRTVKNWDERHLVRELELSVGRD
LQYIRFNGTLVGGLIGLALHAGVLLVQRAGG
>SEQF1086_CAE42434.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDSSQVPNPVLVLVGSPRRDGNSALLAQAVAEGARQSGAAATLLFLDDYIAGFLTDEKEADARRPDDRYGELFFDHFLPA
RAVVLCTPVYWYGMSAQAKAFFDRSFTYYSASHPRHAEVLRRMTGKRLALAVSSEETYPGAALGIVHQLQEFTRYTHSQF
VGMVHGAGNRRGEVAHDPRRPLQAAHRLGHDLLSLPYSDYRIDSPRDHQVWPGAPA
>SEQF1086_CAE42435.1 aldehyde dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDLSDLKKLGLDVAYPFKEQYENYIGGQWVAPAGGEYFDNLSPITGQPFCRVPRSGAADVELALDAAHRACAAWARTSPA
ERANILLRIADRIEGQLPMLAVAESIDNGKPLRETTAADLPLAIDHFRYFAGCIRAQEGAISEIDANTVAYHFHEPIGVV
GQIIPWNFPLLMVAWKLAPALAAGCVVVLKPAEQTPASILVLAELIGDLLPPGVLNVVNGYGKEAGQALATSKRIAKIAF
TGSTPVGKHILHAAADNLIPATVELGGKSPNIFFDDVMDHDDEFLDKALEGLAMFALNQGEVCTCPSRILIQESIYERFI
EKAIARVQSIKTGHPLDAGTMVGAQVSQVQMDKILSYIDIGRQEGAQCLTGGARNDMLPGGLDQGFYVQPTMLLGKNSMR
IFQEEIFGPVAAVATFKDEEEAIAMANDTFYGLGAGVWSRDGARAYRVGRGIEAGRVWTNCYHLYPAHAAFGGYKQSGIG
REAALSNYQQTKCLLVSYSAKALGFF
>SEQF1086_CAE42436.1 putative sigma-54-dependent transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPGYQLSASGQHLPSTQAAAPIVRSWERCASAAADLHDDPVALRHGDLQERLEQHACVLRAAQPEIETLAGMVASASSLV
LLADASGVILQASGNTGFLQRADHVALRPGVSWAENHRGTNAIGTALIEAAALRVHGAEHFLRRNQILSCHAAPIRSPRG
EILGVLDISGDAGRMHAYALSLASMCARQVANRVIEQAGERCLYLVFHKQASLLDSVERGLLLIEDERIVGANDAAVALL
GATWPALLDQPLDGWLVDWRAVARTPGRVHTPQGAPFHAVLRQGGHARSLPAPPRPPRAMPAQAPEETLPALAPALQAGF
ERARRALDGGLSVLLQGETGAGKEVYAQHLYRRSIWRDGPFVAVNCGALPESLIEAELFGYEPGAYTGARRLGARGRLRE
ADGGVLFLDEIGDMPLALQTRLLRALQERMVQPLGADKAVPVNFGLVSATHRDLDAMIAAGEFRADLYYRLHDYAVPLPR
LRERDDLRPFICAALRALDDTPAGLTLADDALDALAAYAWPGNYRQLRSVLRTLALFHPPGSLIHRHHLPAAIAAPAVHA
ADGAAPPPSVVAPPAAATLRDAGLHRIDQALARHGGNIAGAAHELGIHRSTLYRHLARQRG
>SEQF1086_CAE42439.1 putative integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQALTGFTWLLALQALGEACSRLLHFPIPGPVTGMLLLLVALRWPPVREPVALAAQFLLSHLSLLFVPVGVGVMTHIALL
AEYGLRMAAVIVLSTLAGMAATYWALRVGRSATPEADDA
>SEQF1086_CAE42440.1 putative biotin synthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTRSTPTIGQRFDRAAARYETHAEVQRHAAEQLAERIAALPLPAEPRILEIGCGTGLLTRALARRLGRADWTITDIAPA
MLAAQQAGPPPAGRVRHQLVDGEHPAGLPGGYDLICSSLAVQWFGDLDAGLARLAGLLAPGGLLAIATLAEHTFSEWRAA
HQAHGLHAATPAYPPAERIGRTLAGLRGGITREAYRQRHPDALHFVRSLKAIGATAPAAGHAPLSPAAFRRVLAQFDRQG
NHVTYDLAYGLWRKQAPGVFVTGTDTGVGKTLASAILARAWRAHYWKPLQTGVAEEPGDTETVAALAGLEPARLHPPAHV
LQAPLSPWAAAPLEGVTLDAAAIAPPQVDGPLVIEGAGGLYVPIDERHMMIDLIARLGMPVVLAARSGLGTINHTLLSLH
ALRERRLPVLGVIMLGEPSAGNRHAIEHFGGVPVLAQIPRLARVDAEAVEAWAARIPPLADCLARRWPDPQETPACRP
>SEQF1086_CAE42441.1 hypothetical protein BP2163 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAPRPLLRFEHGWAHDAGVWAPLRAALADWPQQAADAGYFGPAVEPPADGAPVVAIGHSLGFLKILQSPAPGCIAYIAI
NGFARFAGGADYPPGVAPRLLERMLARLELDPAAVVDDFRRRAGSAPHAGTPRPEPLRHDLRRLREADERQALAASRLPL
LALAGTADPIVPPALTRAQFGACAGLHWRDGGGHLLPASDPDWCAGRIRAFLAGLPA
>SEQF1086_CAE42442.1 putative 8-amino-7-oxononanoate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKLDSLFTAALEQAAQRQVRRRLRHAAATPPGRLALDGRTLVNFSSNDYLGLARHPLLAERASLWATRHGAGAQASRLV
CGNLDLHEQVEAKLARLKGTEAALLLASGWQANAAVLPALFKAAAAQGEPQVYTDRLNHASLHHGCQAAGVRQIRFRHND
LAHLEHLLAERAGAPGARFIVTESVFSMDGDRADVPALAALAARHHAFLYLDEAHATGVLGPRGMGLAGLAPGGVDLAMG
TFSKGLGSFGAYVAGSRALCDYLVNACSGFIYTTALPPAVLGAIDAALDLVPRLDQARATLQGHGERLRASLAAQGIDCG
ASSTQIVPAIIGDAGHALALAAELERRGLLAVAIRPPTVPAGTSRLRIALSAAHGEAELDQLIEALAAGWRAVRQAA
>SEQF1086_CAE42443.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNTTPAWMAQGYPHIWLPYAQMKTAAPPLPVVRSHGSLLELADGRTLIDGVAAWWTACHGYNHPHIAQAVREQLDRMPH
VMFGGLAHEPALNLASRLSALLGPGLERVFYTDSGSVAVEVAMKMAVQFWLNQGERGRTRFVAFRGGYHGDTFGTMAVCD
PDEGMHAMFRGLLPEHDVLALPRDEAALAALQAHLERHAGRIAGMLVEPLVQGAGGMLLHDPQVLARLRELADRYGILLI
FDEIFTGFGRTGTMFAFEQAGVRPDIVTLSKALTGGTLPLAATVASARVFEGFWSDDPGHALMHGPTFMGCALACAAANA
SLDLFEREPRLRQVAALEQALRAGLEPCRDLPWVRDVRVLGAIGVIELDGIGARDDLRRRLVEAGVWVRPFGNIVYLTPA
FTIAEDELQALLEAVRQVVAERRP
>SEQF1086_CAE42444.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE42445.1 putative integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRPTSILAVPADLPGADRQARRHALVRLGVAWLAMMQVMMFAWPGYVRNDGIPADALATLDWAIVLMNWAALLMTVPVVL
YCAWPIWRGAAGGLRRGRAGMDAPVALGIVAAFVPSVHATWTGRGEVYFDSVTMFVAFLLTARYLELCARQACGASALAT
PLVRRLHQAGGELGAAADRLATRFVFVQVALALAAGEAWTQIDAAHAVPVMVALLVMSCPCAMSMAVPSAMACAHSALLA
RPEATTAQGDALLAAAARVARQNLYGSLAWHLLMTPLALAGWVAPWLAAITMLLSSLAVAGNAWRLRRHRWDAAPAAAVA
QPAP
>SEQF1086_CAE42446.1 putative outer membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSILYLLLPLSLAFVLAIGVALWWAVFSGQYDDTEDQGAAILRDNDN
>SEQF1086_CAE42448.1 probable cytochrome C oxidase subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAQKQHGFFSHQTLEKNIGLMIIASILVVSVAGLVQIIPLFFQHSTTQAMPGVEPYEPLQLMGRDVYIREGCVGCHSQQV
RTLQAEVQRYGPYSVAGESVFDHPFLWGSKRTGPDLARVGERYSDEWHRIHLRDPRAVVPESNMPAYPWLQHADLTGQNV
AQRMQALRRLGVPYTDEAIAAAPAAIAGKTEEDALVAYLQALGVGARRGAASEPQRAAGG
>SEQF1086_CAE42449.1 putative cytochrome C oxidase subunit (periplasmic protein) [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMGYLSALITVLSMGTFLGIVWWAWSSHRQSANRESALLPFALPDEDGPAQQDGAMQP
>SEQF1086_CAE42450.1 putative cytochrome C oxidase subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDFVNGFWSYFIGIIAIGGIVWCVWLLYSQRRWLSTRPAGGVVEDTGHVWDGDLTELNNPVPRWWTWMYLLTCVFALGY
LVLFPGVGSYQGTLGYTSVGEVKQKQAELAERVKPVYERFGGMTPEQLVADAPAREIGQRLFLNTCAQCHGSDAKGSTSF
PNLTDGDWLYGGTPEIIAETIAKGRHGVMPPWKGVIDPRMAGDIAHYVRSLSGLAVDPVRVFRGKREFANYCVACHGVDG
KGNQALGAPNLTDDVWLYGSSEASIVRTILDGRDNRMPAHEEVLTPEQIKLLSAWVWGLSNQAPAKAAEAAR
>SEQF1086_CAE42451.1 putative ferredoxin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQGTPAAPGGPSDPQPPAWRPAPGPRRADGETLEQTLADVRSKIYPRSVSGIFARWRVVFVVLTQLIFYGLPWLQWNGR
QAVLFDLGARKFYLFGLVLWPQDVVYLAVLLVISALALFLFTAVAGRLFCGYACPQTVYTEIFMWIERRVEGDRIARIRL
DEAPWSARKLRIKATKHVLWLAVAWWTGSTFIGYFAPIRELGHQLFALQLGGWQWFWMLFYGFATWGNAGFMRESVCKYM
CPYARFQSVMVDHDTFVVTYDKRRGEPRGGRSRKIDHKAAGLGDCVDCSLCVQVCPTGIDIRDGLQYMCIGCGACIDVCG
QVMDKMRYAPGLIRYTSERAVDEGLDGRRARSHLLRPRVLIYGGLILALAIAFAVSLGMRNPLRVNVIRDRGALGREVAG
GLVENVYRLQIINTSDQPLRLQLTAEGIDGLAVLAGRDGSDVVEVEAAANKLVPVVLRAPRGDTAPGAHAIVVQARSQDT
GRVLEVREPASFYLPE
>SEQF1086_CAE42452.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAGPLVAIIGCVITIYLAMTRYGDQPIAEGAVKRGLVVERVAAPAADARR
>SEQF1086_CAE42453.1 putative inner membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRWRSLMWILWPSFLAAGVGSALIFALIDPLDVAIFGQVPTSRTGFYTVSFFVLWLVTALSSTVTAYLMPPGGQDETPF
>SEQF1086_CAE42454.1 putative inner membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDALHVVVVAGAVVAGFVQGLSGFGYGLTAMSVWAWSIDPRLAAALVVFGSLTGQLIAAFSVRRGFDWRRLLPFLLGGLV
GIPIGVRILPMLDVHMFKALLGCFLVLWCPLMLAVKYLPRITAGGRLADAVVGGLGGVMGGIGGFTGTLPTLWCTLRGFA
RDEQRSIIQNFNLGTLLVTMATYVGTGIVTADMLPLFGLVALAMLIPTVLGTRLYLGISDQAFRRIVLGLLTLSGVAMLA
SSLPRLL
>SEQF1086_CAE42455.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLIRSETPADQRAIFDVTQAAFRGHPHSEQTEAYIVQALRAAGALTLSLVAELDARVVGHAAFSPVQISDGSPSWFGLGP
VSVDPAHQGRGIGTALIEHGLARLQARGAAGCVLVGEPAYYGRFGFRPEPGLVLPDMPPTHFLALTFGAPARGTVTYHPG
FAARDA
>SEQF1086_CAE42456.1 putative ABC transporter, ATP-binding subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQAVISVQGLSKTYASGHPALKNINLDIYRGEIFALLGPNGAGKTTLISIICGIVNPGSGRVLADGHDIVREFRAARDAI
GLVPQELTTDAFETVWNTVSFSRGLFGKPADPALIERILRDLSLWDKKDSRIMALSGGMKRRAMIAKALSHEPRILFLDE
PTAGVDVELRHGMWQMVRRLRENGVTIILTTHYIEEAQEMADRIGVIRKGEIILVEDKHALMSKLGKKQLVIMLDAPLAA
LPALAGDYQLELAAEGTQLVYTYDNQVSGGIAALLRELDARGIGFHDLQSSESSLEDIFVSLVSAQT
>SEQF1086_CAE42457.1 putative ABC transporter inner membrane subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNWYAIKAIYKFEMARAWRTLMQSVASPVISTSLYFVVFGAAIGSHMVEIDGVSYGAFIVPGMIMLSLLTQSVANASFGI
YMPRFSGTIYEIHSAPISYVEIVLGYVGAAASKSILLGLIMLATARLFVPFHIDHPVWMLAFLVLTAVTFSLFGFIIGIW
ADGFEKLQIIPLMIITPLTFLGGTFYSIKMLPPFWQTVTLFNPVVYLVSGFRWAFYGSADVSLGVSLGMTLAFLLVCLLT
VRWIFRTGYRLKT
>SEQF1086_CAE42458.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMQTESNPLAERFIARNLLDLAIRITLIGGLTVWCYRVAEPFIGMLLWSIILAVTLAPLHMRLTRLLGARPRLAAVVLTL
ATMLVLLVPGAMLTASLGDSLVNIFHHSTGRIVRIPAPPDFVIELPLIGVRLHEIWLQAMTNLQDVLKPLQPHLATAGRW
LLAGMASAGLGIAVFLASIAIAGVILVYADPAKRAAHAIGVRIAGPEQGVALAQLTAATIRAVAQGVIGVALIQAVLAGL
GFLLAGVPAAGLWAIVALLICIVQLPLFLLMVPMVVYVFLNNTPTVAIVFAVWCLLVSLCDNVLKPLMLARGVDIPIPVI
LIGALGGVLAAGIVGLFLGSVGFGLGYVLFMQWVRQQSPAG
>SEQF1086_CAE42459.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE42461.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRIGGVGIAWYRKEDYERVRAISNDAHTFPDTFEDWEKRAEERREEILKLGHVVIKAYIDPDTFPAWCRANRYKVDAKG
RMAFASAEAHRVTSHVHKD
>SEQF1086_CAE42462.1 RNA polymerase sigma factor 70 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTKSTGKSPSAIDAATAQSTTAKRAASMAAEKAPAKTAVKVAKPAAKTAAKKTATKTVAAKTAAADKPAKTTKARAKKAE
DKLADLVGAARPAPSGRRPGRPAKNANNDSDAFDDSMDGEGEVLPDLKPPKRGGKRGKADPKDLIARGPVSPEEYEARRN
RLKQLIKLGKDRGYLTYGEINDHLPDDLVDAEAIDGIISTFSDMGIAVYDQAPDAETLLMSENAPVASNDDDVEDEAEAA
LTTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVMAISACPTTINEILAHITRVREGQAQIDEVVD
GLVDPEDGEEYAGAGVTADEDEGDDGPAGGMSSKQLEDLRVKALAKFDEVSKQFEKMRQSYEKEGYKSDAYLKAQDIIQT
ELMGIRFTAKMVEKLADTLRAQVEEVRQLERAVLHTCVDRAGMPRSHFLKAFPGNETNLQWVLDEVAAAHAYSETLERQI
PAVQELQQKLIDLQTRVVLPLKDLKDVNKRMATGEAKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAQKMDMPEDKI
RKILKIAKEPISMETPIGDDDDSHLGDFIEDTATLAPSDAALHGSMRDVVKEVLDSLTPREAKVLRMRFGIEMSTDQTLE
EVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLEGQ
>SEQF1086_CAE42463.1 DNA primase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIPESFIQDLLARVDVVDVVGRYVQLRKGGANLLGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGSAITFLMEHTGASFP
EAVRTLAAAVGLTVPEENHSPRQQAESARRKAEVSRHTQVLDAAQAHYLRQLRGSPQAIAYLKQRGLTGEIAAHFGLGWS
GTDRHGLSHVFDNYEDPVLVEAGLVIESEDGRRYDRFRERVMFPIRNARGSLIGFGGRIIGKGEPKYLNSPETPLFSKGH
ELYGLWEARLAIRQEGQVVVVEGYMDVVGLALQGIANAVATLGTSTTPDHVKKLLRASDKVIFSFDGDAAGRRAAWRALQ
ACLPVLRDDIAIRFLFLPAEHDPDSYVRELGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAIP
ECALRVQIERELARLVQLTPEEMAQVLAQQPARPLASAAAPAQASAPAAGREGGPGHADEAPPDWAFEPVHDFEPDAYSV
GAVDGEPSMPAAGGWQERKGRQGGDWKGKKGDWKGKKGDWKGRRDNDTGGYEGRRTMPSLARRLLCLLLAHPELVDTMGD
QQLEVIDHGPHLGLVRDLILLAQTSGARHVGALMEAADPDSDLYVVLKGLRADVLAQEDLPHPQTEWDDALRRMEFDAAR
AEMAKLAESGLATDEARRRYLELSSRIMVLKNAGAQ
>SEQF1086_CAE42464.1 30S ribosomal protein S21 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPIVRLKENEPFEAALRRFKRTIEKTGLLTELRSREFYEKPTAERKRKHAAAVKRHYKRIRSQQLPPRLY
>SEQF1086_CAE42465.1 putative transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSPSSDDSHLWVTWDDYHRLIERLALQVYQSGWQFDQILCLARGGVRVGDVMSRIFDVPLGILATSSYREAAGTKQGDL
DIAQFITITRGTLSGRVLLVDDMVDTGHTFNKVHTHLSEQFPAISELRSAVLWWKGHSQATPDYFVDKLPTNPWIHQPFE
DYDSLRPHQLEAWIRKGYK
>SEQF1086_CAE42466.1 adenylosuccinate synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIRKMSKNVVVIGTQWGDEGKGKIVDWLAESVQGVVRFQGGHNAGHTLWINGKKTILRLIPSGIMHDGVTCFIGNGVVLS
PEALLREIEELEAAGLDVRSRLQVSEICTLILPYHVAVDKAREARKGEGKIGTTGRGIGPAYEDKVARRALRVQDLFNPA
LFDEKLAEVLDYHNFVLTQYLGAEPVSANEVRDQAMALAPALAPMVRDVSSNLFALQQEGKNLLFEGAQGALLDVDHGTY
PFVTSSNCVAGAASAGAGVGPQALQYVLGITKAYTTRVGSGPFPTELVDEIGARLATIGKEFGSVTGRPRRCGWLDGAAL
KRSVRLNGISGLCITKLDVLDGLETIQLGVGYRVNGEFRDVLPYGAHAVAQAQAVLEELPGWTESTVGITEYSKLPVNAR
RYLERVAEVCGVPIDLVSTGPDRNKTIVLRHPFKG
>SEQF1086_CAE42467.1 putative tRNA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGNWLLPEGLADVLPAEARRIEELRRELLDLYRTYGFELVAPPLVEYIDSLLSSTGSDLNLRTCKLVDQLSGRTLGVRAD
MTSQVTRIDAHLLNRAGVTRLCYCGSVLHARPADLLSSRELLQIGAEIYGHAGFEADLEIIQLVMDTLATAGVRNARLDL
CHSGVMRAIFDADPQASRHAGDLCTLLREKDVPGLAELASRVDGLGEDTVRALQALATLYGGPEIIARARRELPAVPGMA
QALDALQALVDAMPGVTLSVDLADVGGYGYHSGVTFAVYGEDWHDALVRGGRYDDVSCAFGRARPATGFSLDLRKLAAGL
TPAEPARAVRAPWGQDPALTDAVRRLRRSGEIVVQVLPGHEQGLDEFVCDRELALQDGAWTVRTL
>SEQF1086_CAE42468.1 putative inner membrane-anchored protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQRLMPILVGLLVVLAVLSSCVFVVRERDYALVFSLGEVRQVISEPGLYFKAPPPFQNVVTLDKRILTIESSDAERIQTS
EKKNLLIDSYVKWRIADPRLYYVTFGGNERAAQERLQAQIRDALNAAVNVRTVKDVVSAERDKVMAEILTNVVKRAEPLG
VQVVDVRLRRIEFAPEISESVYRRMEAERTRVANELRSIGAAESEKIRAEADRQREVIVAQAYARAQGIMGEGDAQAGSI
YAQAFGRNTEFYTYYKSLEAYRAAFGKTGDVLVVDPTSEFFQFFKNPGKGAAGAPAPAN
>SEQF1086_CAE42469.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRITKLFNLNDPGWGRGNNNGNGSEPPRRPQGGGDGPPDLDEVWRDFNNRIGALFGRKGGGGNNRPNNRGGMTPPSPRG
ARIGLGIIALVLVLLWLASGFFIVQEGQVAVVTQFGKYKSTAPAGFQWRMPYPIQNHEMVNVSQLRTFEVGFRGGSRNKV
LPEALMLTTDENIVDMQFVVQYRLRADGAPDYLFKMRDPDESVRQAAETAMREIVGKKPMDFVLYEGRTEVATEVQNLMQ
QILDRYSAGIQISTVAIQNVQPPEQVQAAFDDAVKAGQDRERQINEGQAYANQVVPLASGQASRMIEQAEGYKAKVIGDA
QGNASRFSSILNEYEKAPQVMRERLYLETMQEVFTRASKVMVDTKGGNNMLYLPLDKIMQQAAQDAGKPSSSSLGLPGAN
QPAIPQAPARGSTSGQSSSGSSTSNTLPRDRMSR
>SEQF1086_CAE42470.1 putative GTP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRALIISVDLGNPDYPAHAEEFAMLAKGAGAEIVGTLTARRDRPDAKFFIGSGKVEEGVAMAGALLADIILFDQPLSPAQ
QRNLEREFNLRVVDRVALILDIFALRAKSHEGKLQVELAQLQHLATRLTRMWSHLERQRGGIGMRGPGEAQLEMDRRMIG
AKVKVLRERLDRVERQRVTQRRARARGGALSVSLVGYTNAGKSTLFNAMTRAGAYAADQLFATLDTTTRRIWIDGAGSVV
LSDTVGFIRDLPHNLIAAFRATLEETVYADLLLHVVDAASAQRDEQIAEVDKVLAEIGAAQIPTILVYNKIDRAGLEPRV
DRDAHGTIARVFVSATERAGLDALRGAIAEIGQIVGNNVSNHQTLQSE
>SEQF1086_CAE42471.1 putative RNA-binding regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNKGQTLQDPFLNTLRKEHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAISTVVPARAVNFQVEVPAE
>SEQF1086_CAE42472.1 histidinol-phosphate aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRYWSPVVGTLSPYVPGEQPKLPDLIKLNTNENPYGPSPKVLQAIAAAAGDTLKLYPDPASDELRGAIAAAVGVQADQV
FVGNGSDEVLAHVFMALFRHGRPVRFPDISYSFYPVYCGLYEIPYQVVPLTDDFRIDPADYQPGGQAAGGIIFPNPNAPT
GRALTRDEVERIVTANPDTVVVVDEAYVDFGAESVAPLVDRHDNLLVVQTLSKSRSLAGLRVGFAVGNRALIDGLERVKN
SFNSYPIDRLASAGAQAAMQDQAYFDRTRQAVMATRERMSADLRALGFDVLPSAANFVFARHPEHDAAQLAARLRERSIL
VRYFRQARIDQFLRITVGTDAQCEALIGALKKIFSL
>SEQF1086_CAE42473.1 putative GTP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSFKPVVALVGRPNVGKSTLFNRLTRSRAALVADFSGLTRDRHYGEGRVGDTPFLVIDTGGFEPVAKDGILAEMARQTRQ
AIAEADVVVFLVDARAGVNAHDHEIARLLRKSGQQRVLLAVNKAEGMGVGNATGDFHELGLGEPHPISAAHGDGIVDLIE
IALSGLVAPPADTGEQLEQDVVDHRIKLAIVGRPNVGKSTLINTLLGEERVIAFDMPGTTRDAIEIDFERDGRKYTLIDT
AGLRKRGKVFEAIEKFSVIKTLQAIEASNVVLLMIDAQAEVSEQDAHIAGFVLETGRAVVVAINKWDGLDSDQRERIERE
FQRKLRFLGFARMHTISALKGQGVKPLLKSVNAAHAAAFAKLSTPRLTRELQAAVEQQPPPRKGIFRPKMRYAHQGGQNP
PLIVIHGNALDAVPDSYRRYLETRFRNAFDLAGTPLRIEFKSSRNPYVQEN
>SEQF1086_CAE42474.1 putative quinoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMRNSRPGRAWRGAVVLTGLLALSGCSMFSSDDDRYKPAELTQYAPGMSVRTAWTASVGSGSGLGFAPTVLGESIYAATP
DGSVGKFDLLSGRAIWKSSADAKLSAGAGSDGQTTAVATPDGEVIAFDDTGKIKWRARATSDVAIPPVVGYGVVVVRSGD
YRIQAFNAENGERMWSMQRPGPALALRSAAQMVLAEGLVISGLPGGKLLAINSATGNVQWEGTVATPRGASDLERLTDVV
GAPRIAGRLMCAVAYQGRIVCFDVSAGGRPIWAKDFSSASGMVIDDRFAYAPDQGSVVSAFALDSGNNVWKQAELKNRLL
TAPALLGEAVAVGDFEGYVHFLSRSDGRLLARLSVGGGAIVSPPQTTSQGVLVQTGNGSLVMVRAN
>SEQF1086_CAE42475.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAYDLEEQEKLDAIRAWWARYGTLILTLATLVVLAWGGWSGWKAYQNYRANQAMGYFEALEDAARLGGADAATRIKAAAA
TLRTDYPATGYAGRGALIAAQALQSQQDVDGAREQLEWLAAQAKQLALQPVARLRLAGILLDQKQYDAALAQLNNPPASF
AALFADRRGDVLAAQGKRDEARAAWQSAIDGLGTSNPLTQVVQLKLDALSGA
>SEQF1086_CAE42476.1 histidyl-tRNA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVGMTKMTQVFQKVSAIRGMNDVLPGPSARWEKFEEIVRGWLRSYGYRNVRTPVLEHTRLFARGIGEVTDIVEKEMYTFT
DALNGDSLTMRPEMTAGIVRASIEHNMLYDRPHRVYAIGPVFRHERPQRGRYRQFHQIDVEALGFAGPDVDAEMIVMLAR
LWKLLGLQDVRLELNSLGQPAERAAHRAALIEHLERHQDVLDEDGRRRMYSNPLRVLDTKNPAMQEMADSAPRLFDFLGE
ASRSHFDGLCQRLADAGIEYRLNPRLVRGLDYYNLTVFEWVTDRLGAQGTVCGGGRYDGLVELLGGKPTPAVGFAIGMER
LLDLWEQSVEIEQPAECEVYIVHQGEEGQRLAARVGEQLRDAGLDVIVHAGAAGFKAQFKRADASGARIAVILGGDEVAS
RTASIKHLRGPVGADAAQQQVPLAQLADVLKSKG
>SEQF1086_CAE42477.1 1-hydroxy-2-methyl-2-(E)-butenyl4-diphosphate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRYMQDSSMPCQDASPPDVGAAPRRATRAVRVQWGGRTVTVGGNASVVVQSMTNTDTADAVATAIQVKELAQAGSEIVRI
TVNTPEAAREVATIREQLDRMGVEVPLVGDFHYNGHKLLTQFPECAQALSKYRINPGNMGGGKQRDDNFAQMIEVACRHD
KPVRIGVNWGSLDHELMARKMDENSRRAQPWEAQAVIRDALVVSAISNARRAEELGLRSDAIVLSCKVSHVQDLIAVYRD
LSARCDYPLHLGLTEAGMSSKGIVASTAALAVLLQEGIGDTIRISLTPEPGGDRTREVIVAQEILQTMGLRAFTPMVVAC
PGCGRTSSTFFQELADSIQSFLRRQMPLWRTRYPGVESMNVAVMGCVVNGPGESRHADIGISLPGTGEVPAAPVFIDGER
TVTLKGDHIAEEFQAIVEDYVARRYGAGITH
>SEQF1086_CAE42478.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQDPASAASPAAIAPGAAAPTVGSALRALRQAKGWSLEEVSSRIKFSTRMIQALEEERWESLPKGVSLRGLVRNYARML
GADAQAVVDSLDLEAARTPAPARPAPRGGQGLRPAGVNISVDDERSSGSWGWLLAILVVVAAAVAYAFWQGWLPQEWLPA
QWFSPVTQ
>SEQF1086_CAE42479.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEAVERVNLLGLDGAALSELVGQWGGKPFRARQLQRWVHQRGADSFDAMTDLARDFRAQLARDCVIEALPVNTEQRSSDG
TRKWLFDVGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQGFNRNLRASEIIGQLWWAKRVLEAAADTARLPG
GKAGEDTRVISNVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDA
LRDELVPLNKKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHARELIQLARQVRCKLNLIPFNPFPASGLKRS
PSARVRVFAQRLMDAGIVTTVRKTRGDDIDAACGQLAGEVRDRTRITERNATRTIPIQQVHA
>SEQF1086_CAE42480.1 nucleoside diphosphate kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSIERTLSIIKPDAVAKNVVGQIVARFEQAGLKVIAARMQQLSRTDAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGE
SAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPEINIHSR
>SEQF1086_CAE42481.1 valyl-tRNA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDAAPNQPVNESQELSKSFEPAEIETRWYDEWAKRGYFDAGRHVETGTDPQPYVIQFPPPNVTGTLHMGHAFNQTIMDG
LVRYHRMLGDDTVFVPGTDHAGIATQIVVERQLDAQKVSRHDLGREKFVEKVWEWKEQSGSTITGQVRRLGASADWPREY
FTMDARMSRGVAETFVRLYQQGLIYRGKRLVNWDPKLLTAVSDLEVQSEEVDGHMWHILYPFVDGPQTITDQDGNTVTLR
GMTIATTRPETMLADGALCVHPDDPRYKHLLGKLVELPLCDRNIPIIADDFVDPDFGTGCVKITGAHDFNDYACALRHDI
PLIVIFTLDAHINENGPKQFQGLERYEARQAVVAELQAQQYLVKVEPHKMMQPKGDRTGVVLEPMLTDQWFVAMSKPAPA
GTLNPGKSITEVALEAVADGRIAFYPENWTTIYNQWLNNIQDWCISRQLWWGHQIPAWYSEDGQVFVARSEEEAQEQARA
AGVSGPLTRDPDILDTWFSSALVPFTTFGWPEDTPDLRRYLPSSVLVTGFDIIFFWVARMVMLTMHMTGSVPFKHVYVHG
LIRDADGQKMSKSKGNTLDPVDLIDGIDLKGLVRKRTFGLMHPKQAGAIEKATRRQYPDGIPAFGTDALRFTMAAYATLG
RNINFDLKRCEGYRNFCNKLWNATRFVLMNTEGHALDGDGGELSFADRWIVSQLQALEAEVERGFADYRFDNVANALYRY
VWDEYCDWYLELAKVQIQQGTPAQQLGTRRTLIRVLEAVLRLAHPVIPFITEELWQKVALVAGKRTAGAVASVSVQPYPR
ANPQAVDAEAEAAVAELKSQVEAVRALRGEMNLSPAQRVPLVAEGPTDVLSRNTPYLAALAKLSEVEVVAALPDAGAPVQ
VVGDARLMLHVEIDVAAECARLDKEIARLEGEIAKANGKLGNASFVERAPAAVVEQEKARLAQFSETLEKVRGQRVKLGV
>SEQF1086_CAE42482.1 putative outer membrane (scaffolding) protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTMKHAWWRATVVCLAGTLGTAAQAQNYIGISAAVAPRYEGAKDYRFLPVPLIHYENGPFFISPRAGLPSAGLKWQLGEH
VHAGVFVGAHLGRDADDSDILHGLDDIDMHATYGAYIEWQYGALGLGAAYRQAARSGYGGVGELRATYRVWQTGRDSVSV
GARTEWASDDYMRTWYGISASQAARSEAGLRRYSASSGFKSGGIFASWTHRLDQSWAVNATAGVNTLFGDARDSPVSERS
TNYFGGVGLTYAF
>SEQF1086_CAE42484.1 putative two component sensor kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKSLKRRILTAVLAALLLNWGVWLGWQTFEMGRRETGTWDARLRDVASQAVLSMPLDIMERSEPTGFRLPEPVQTSELRM
SFQIWSMASRRQIVHSVNAPPGPLNPAFADGYADVELDGEPWRVYSVTDAEGRIQAQAGHSLAARRGDILQWLGASLKAS
ALLFLFLALSILLAIDRAMRRLDRVGRAVQQRDPLDLAPLPDGDVPAELRPLITAINRQFGRVHTALARERRLIADAAHE
LRTPLAALKMQAEVALGARHADERHSALCKLLDAARRAARLSEQLLDQARLDAMEATVPGGEVDLATLTAMIIADHQARA
QARHQRIQLDARPAFVSGDLDSLGILVSNLVDNALRYTPEGGRVVVYCGPLENSAVGLRVLDNGPGVPADRHERIFERFY
RQPGQAQRGGGIGLSLVAQIARLHRARIDCGAGLDGRGFGIAVGFAPRG
>SEQF1086_CAE42485.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE42487.1 putative amino acid dehydrogenase subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRVCVVGAGVVGVTSAYFLARQGHEVVLVDSHAQPAEASSYANGGQLSYSYVAPLAGPGVLPSVPGWLLRSDSPLRLRPR
LDPHQWRWCLQFALACRASVAERSTAQLQTLSYLSRDVMDGLLAQEELEFGHVRNGKLIAYRDHALLEKARRLVAYQASL
GAEQQVLDAAQTLALEPALAGLGASLAGAVYTPSEEAGDCRQFTEALFARLQQLDNVQCLMSNPVRGLWREGRRIVAVQA
AQGDIGVDAVVLATGVGTRALLKPLGQDVPLYPLKGYSLSVPLPVGDTTAPAISVTDYERRIVYARIGRVLRIAAMVDIG
GADAAIEPARIDLLKRQVAEAFPQLDLSQAVAWAGLRPATPTGKPLIGASRAADNLWLNIGQGALGFTLACGSAALLTAQ
MSGLELPIDATPFTPDPRRACPRTGTGTR
>SEQF1086_CAE42488.1 putative conserved DNA-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQLNRFTDFGLRVMMYLTQCRDRTVPVTIPEIAARFEISRNHLVKVVHFLSQQGWIVATRGKGGGLRLARDAVEYRIGEL
VRVLEDQGALVNCAQPPCVLNGACRLSGALAESLQAFYRTLDGYTLDDLVRAPTALAIVRLHRAA
>SEQF1086_CAE42489.1 flavohemoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLSPEVRALVKATAPVLKEHGEALTRHFYTRMLGGNPELRQLFNQGHQQSGQQQQALAAAVAAYAEHIDDPSVLLQVVER
IAHKHVSLGVRAEHYAIVGKHLLASIREVLGEAATDELIDAWAAAYGQLADLLIGRERALYAAAASRDGGWTGWRAFKVV
RKTPESAEITSFYLAPADGGATPDYLPGQYVSVRVYVPELGLMQPRQYSLSEAPGMPGQLRISVKREAGSPAGMVSGTLH
NRINEGDVLDVSPPQGDFTLDAEDGRPVVLLSGGVGLTPMVSMLNHLTARDDGRQIRFVHACREAGVHAMKEHINALAAK
RPNVRKAVFYERVGADDRRGVDYDYEGRVDLHAIRDEVILPDADYYLCGPLPFMQAQRRALADLGVAEHRIHAEVFGTGG
VA
>SEQF1086_CAE42490.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSHDTLKARLSDSVKDAMRAKATDRLATLRFLLAAIKQREVDERRELSDAEITAVIEKQVKQRRESIAAFEQAGRTETAE
HEKAELAVLQEFLPQAAAPEEVAAAVDAALAEVSAQGVTGAPAMGKVMAILKQKLAGRADMAALSQQVKARLLP
>SEQF1086_CAE42491.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI
>SEQF1086_CAE42492.1 L-2,4-diaminobutyric acid acetyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRKDETSNTSPDISAAQPASALRYHLRPPRRNDGAAIHQLVSECPPLDLNSLYAYLLLCEHHAHTCVVAESPGGRIDGFV
SAYLLPTRPDVLFVWQVAVHSRARGHRLGRAMLGHILERQECRHVRHLETTVGPDNQASRRTFAGLAGERGAHVSEQPFF
DRQAFGGADHDDEMLLRIGPFTHPPH
>SEQF1086_CAE42493.1 putative transcriptional regulator (MarR family) [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNNVAQTDTPQQYDLRILRALRRITRSIALHSRQLAAVSHITAPQLMCLRAVIAGGPMTATAISREIHVSPSTVVGILDR
LEDKGLIRRERGREDRRIVFVTATEGGRTLAAEAPSPLQKHLADGLNALPELEQATITLALERIVALMEQEGHAVEAAGE
GSPPILEMPTGGAPLESGLVV
>SEQF1086_CAE42494.1 putative regulator (SIS family) [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFFIFSEIYHVFFILFRAMPPTPAPSMLETLQSLLDDLPAELQRAARWVAAHPAEVGLWSMRRQAQAVGVAPATMLRLAR
AAGCGSYEDFRAPFQQALTAAGGSGWRDRAAELQAAQDAGAAPGHDVLTGLQTQAIGSIRALNPPAAFDAAARTLLAAGQ
VGFLGTRSAFGIAHQMRYAYQLVRRNGLLIDGLGGAPAEQIDNLQAGDALVAISQAPYPAATVHLARQASQRGVTVVALT
DDPLSPLALEAGHVLLFARPERERVYAEPAQRGPGSFFHTTAGLLGLAEHLIARLAACGGETALARLAEIEARLQAEQVY
WSPAHARRDKARPGRGMPREAA
>SEQF1086_CAE42495.1 putative aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTTHVLHRSLRHTPPVAVRGEGVWLYDQAGRAYLDGSGGAAVSCLGHNHPDVRAAMHAQIDALAYAHTGFFSTEIAERL
ADRLVADAPAGTSHAYFVSGGSEAIEAALKMARQYFVEIGQPQHRHLVARRQSYHGNTLGALAVGGNEWRRAQFAPLLID
VAHVAPCYAYRDQREDESAEQYGERLARELEDTFQRLGPDTVIAFVAEPVVGATAGALTAVPGYFRRIREICDRYGILMI
ADEVMCGMGRTGTLYAVEQEEIVPDLITIAKGLGGGYQPIGAVMAQGRIVDAMSKGSGFFQHGHTYLGHATACAASLAVQ
EVIRRDGLLARVRQQGDGLRQRLMQALGAHPHVGDIRGRGLFLGVELVRDRATKATFDPELALHARVKREAMARGLMVYP
MGGTIDGRHGDHVLVAPPFIIADDELDQLVERLAGAIDAAIAQTRA
>SEQF1086_CAE42496.1 putative cell surface protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGKSVKHTLGHRKAFSLAAACAAVALAWAAPTPAAAQQKFVSIGTGGVTGVYYAAGGAICRLVNKDRASHGVRCSVESTG
GSVFNVNTIKAGELDLGVVQSDVGFNAYNGEGQFKQGGAYKKLRSVFSIHPEPFTVLARKEAGIKSFEDFKGKRFNVGNP
GSGTRASMEELLASMGWTLKDFSLASELRPDEHGPALCDGKIDGFFYGVGHPSANIQDPTTTCGAQLVSLTGPAVDKLVD
KYPYYALATIPGGLYPNNPQDTKTYGVTATFVTSEDVPEQTVYLVVKAVFDNFEDFKKLHPAFANLKAADMVKNGLSAPL
HPGAQKYFKEKGLL
>SEQF1086_CAE42497.1 conserved inner membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKNESSTTTADLEQLVAEADRGGRHAGGVAGATLAAGALVWSLFQLWYASPLPFSLHWGVFNDTEARALHLGTAMFLGYL
AYPATKRSARDRMPWYDWVLALAAGFCGAYLYLFYNELAIRPGQPTSMDVATAVAGLLLLLEVTRRALGLPMTVLGAVFV
LYALAGPWLPDVLAHRGASIERLMSHMWLTTEGVYGVALGVSVSYIFIFVLLGSLLDKCGAGNYMMQVSFALLGHLRGGP
AKVAVVSSAVNGLVSASSVANVVTGGIFTIPLMKKAGYGGVRAGAIETASSVNGQIMPPVMGAAAFLMIEYVGIPYTDII
RHAILPASISYIALFYSVHLEALKLGIEPMMAAGKPRTPLQKLAGWGMGISGTLIAMGLVYWIGVGVQAVAGAAAIWILL
AMLVALNIWLLRVAARHPDLPTEIDVNHPVRPEPWPTVRAGLHFLIPIGILVWCLSVEELSAGLSAFWAAAATLLQMVTQ
RPLTAWFRGQAIAPAALLGWRDAIGGLQDDARNMIGIAIACGTAGLIVGAITLTGLGLRMTAFVELVSMGNVLLMLIFTA
IVCLILGLGMPTTANYILMATLMAPVVVELGAQNGLIIPLIAVHMFVFYYGIMADITPPVGLATFAAAAISGADPIKTGV
QGVTYALRTAVLPFMFVFNPLLLLIDVNSWTELILVAGSATLASLTFASATLGWFRVRCTMLEIVVLLAVTFMLFRPDWL
LDQVSERYQARPAAEVVQTAAALPHNGRLVAVLRGINLEGDELTKTVAVALPALDEGETLQGEAAGRKRLTDAGLTIVAL
GDQVQIGGVRFGSTARRAGWEQGWDVLELRVPNPARPAEFWAYLPGLVLLALVWFAQGRRQRAAAR
>SEQF1086_CAE42498.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEATRAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE42499.1 hypothetical protein BP2222 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYQNNLIYKGYRLTAKVARHTVEVNEAAPSGPLFQATVSVVQADSIQDTGDEYPVPYFADGGFVYSPREAVHQAISHGRE
IVDALIGLPA
>SEQF1086_CAE42500.1 putative autotransporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVGRSCHRAGWLYRATFLLYAANCAYPANAQSVSGSGQVSNGPITSPHWVVGGELIVGDTGAGTLLIEAGGTVLNDWAYI
GSDNGAVGTLTVSGRDGAGAASTWTTVDDVSIGVAAGSRGTLEVLGGARAQSGWGTIGVAAGSVGSVTVSGPGSVWNIAT
VNSFQIGSGGSGTLWIDQGGAVYSGQGVIGWNPGSDGHVTVLGPATVWNPLNNIYVGLGGTGELDIRDGAAVATAGSSPP
GAAASIYIGTSAGSAGTVTVSSATAVTSTLTSTDRIEIGSAGAGVLTVAKGGMVGVASDAWIAITGTSSGTLNLTGDASG
RGVLETGSVIKGAGNATFNLDGGVLRANRDEANFLNGFSTQAVGSGGAWFDTNAHDVGVVTAFSGTSSFNKLGAGTLTLS
GNSAAFTGNTDIQAGTLQVDGVLGGPVDVLAGARLTGTGRVGATANKGTIAPGPRSGFGTLTIAGDYAAQGGNLEIRTQL
GADDSPTDRLVITGASAGVTPVTVENIGGTGASTQRGIQVVQVNGASAGRFNLANGDYVIEGRPALVAGAYGYVLQQDAA
DGDWYLKSSLPDPGAPQGGGGLPGAGEPVLYQPGVPVYEAYANTLLHLSRLSTLRQRVGNRLYDPADVGRNGVWSRVEGS
ASQLDPSASTTGERQDVDSWKVQFGVDRILAGGQEGSRLVGGLALQYGKADTRVSSIYGNGTVDATAYGLTPTLTWYGRD
GAYVDAQAQAIWFDSDLSSRLAGKLKDGRKAHGYGLGIEAGKAFGLREGLALIPQAQLSYASTRFDSFDDRFGARVEDDK
GDSLQGRLGIALDYKSSWQAGGANRESSVFGIVNVKHEFLDGTRVRVAGVPVSSRMARTWGSVGVGADYGWGERYAIYGQ
VDADADFAGSYIVTATAGFRMMF
>SEQF1086_CAE42501.1 putative phospholipase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDPLEQLLRDYWPHIVFAISVVAGTGAAVHAAMTKQDVRAAIAWVGVALFSPLFGALLYFVAGINRIRRSLVSQQHDDAM
LAYTGHPDAQVEDVVPCSGPQFASLRVLGDQVSRFRLLGGNQVRPLAGGDEAYPAMMQAIREARVSIAMQSYIFDCDPIG
REMAQALVEAQQRGVQVRVLIDAIGSKYSRPPIVRTLVRGGVRTARFMTNPLGVMRMPYANLRSHRKILVVDGHVGFTGG
MNIRAAFVTALAGKAANGDTHFRLEGPVVAQLMAVFAHDWNFTTRESLEGPTWFPPAPERAPGSVPMRCVASGPDSALGS
THKMLLGALAVAQRHVRIQSPYFLPDQTLIGALGTAARRGIKVDIVIPGSNNLRLVNYAMSAQLDQVIRTGCRVWRSAGA
FDHSKLLTVDDAWSYVGSSNMDPRSLRLNFELDTEIYDRELAGWIGQRIDAQIRHARQETLQALNAQPFIKRLRNKVIWL
ATPYL
>SEQF1086_CAE42502.1 putative anti-sigma factor antagonist [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLTMDKMDGMLIACLQGVVNSANAEQLEAELAAQVDKGERRVVLDLGRLDYISSAGLRVVLLVAKQLRQVQGELVLCEL
KPHVREVFEISGFLTIFPVANSREAAAAAFKTALPR
>SEQF1086_CAE42503.1 putative anti-sigma factor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSKTDTLELSVTATTATDALYWLEHIALRDRWSARLRFTLTLCADEALNNIVSHAFTPGHPAAIHLTLRQTRREVSLHI
ADNGAAYDPTQALSPPLARSLDDAQPGGHGLRLMRHFMHALSYQRRDGWNHLTLTSHSAPES
>SEQF1086_CAE42504.1 alanine racemase, catabolic [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPLASDPFEAPIPGLHACIDPIAVAHNLEVLRQRLGVGVDGPRIWATVKADAYGHGLHNVLPGLRAADGIAVRHLHEAHQ
CRRVGWSGPIMVYAGLTHEREAALLTLQQLHLVITDMTQLEWLPGKPLYSCAPWIWLRYIGATRLGGLDASEYRRAYARC
RELQQHGALRGVGHLNHYANAASVGDLEREHADFEACIRGLPGPVSTCNSAAACVLPTMAARTDWVRPGLALYGVSPIPG
RAGRDLGLRPAMTLRSTLCATQNLPAGASVGYGCTFVADQPMALGLVRCGYGDGYPHNPRASFPVQVDGVLTRTVGRISM
DLMAVDLRPIPAAARGAPVVLWGSPQLPVEHIAHAAGTIAAELLTGLTARVPLMRADHAALLRGPPA
>SEQF1086_CAE42505.1 putative inner membrane transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRDMPSRAAAWLGSAMSTWFDRGKGALRKLNSRPLLGVTLACVALLCLAQGLTGLLTLSALQRQIVDATAARVEASARQS
AIVIENGVRLGKPLEQYFGLRDLLDGLLEESHGVTGVAVVLKDGRLVASAGVLVPHAARLARALAFPDDEPDVQRQPSGS
VRLVGDEAVSLGIPLAGSDGIVRAALVLGWSRDPAFMHALMWRNLQVLALVTAAVALALALALVLRRGERRRRERGGARA
RFVLPLVALLLAQGVYAGYTIGMFRDVWLDVVRHNAVVLATGLQRGLDRVLGYGLELHQLRGVDRLFSRTIHAYPLIGSI
ALVASDGRVLQKVNARGSVTGDAQRRFADDPGYTVSLPLGGPDASRGALALRLDGGAVAAALRDRALDAATVAVVALVVA
VELLLLLAVVMNRALPSGQGRQPSADGTDVGGLTRPVMFGYLFACAMPASFLPLFARSLPAANLPLPPGLLIALPISLEM
GCGLLAALMAGRLSERKGWRHAVLQGLLLSCVRFVASALAPNLAWFVSARGVVGLGYGLTWMGLQALVVSRSPPTHRGRS
MAGVVAGLFAGQLSGVAVGAMLMEQLGFRAVFAIGAVLLLLPLAGVASLLRACALPSAMAASTSVPQGRRAPLGPLLRGR
GFGMLLWTSVIPFSIAQVGVMSFALPLYLEAEGAAPASIGRIFMIYGVCVVYLGPLVARWVDWSGVRRPWIVLAGALGTA
GLLVFRLLPDGLLAAGVALSLLALAGCFAGTSQMPYMLELRAVREHGAAGAASVMRAADKLGQMLGPLLIGALSGPLGMG
AAMAALGMMYLGATLWFVLARPWRQGGG
>SEQF1086_CAE42506.1 putative regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFMRRTPRLELPLSLRGKFLLLIASTLLLVGIVVMLVTQRDVTNNIIKNELHAVSNIMDLVVRDTDTRWSTLLDDKIRTI
RESRRQLIQLSAVVTSVLNAYAAQAERGHVTTGAAKGMARVWLNHLDLGPRRVAFAYDAEGTVLASTNPRMIDRDLSGIR
DFKGRPLAAAMYEESRNDGRGFAIYPSPLDESAQMRHAYFVYFPAWKWVLAISDSSQAIIDKVAAQKANMIAAIDRNLSE
LRLSRHGFVFVVADDGTVIVPPPPSAARLLDSTDVESGRVLHSMLAEISSTRGLTLRFTNGESAWQIDALRYKPLHWTII
GVVPEPDLTDPAQNLVRRQALIFAATLLAGLMLAWVVAVRIARPLAQLSNYARQLPTQDLTEPIRVPPSVACLPRRRRDE
VGQLAESFLFMNEQLHHNVRALMAQISNRERLESELSIARSIQLGLLPQPLPDAATRGSQLRAVMYPAREVGGDFYDYFV
LADGRLCFAIGDVSGKGVPAALFMAIVRTLIRSVAEEEHDPGAIATKVNHRLAENNPKLMFVTLLIGVFTPETGALAWVN
AGHPPPLLIDERGEVRLLQGSSGAACGVLDNEAYSTLSTTLPNGTSLVAFTDGVTEAIHGGCAQYGLPRLVALMQGAPHA
AAELIEHILHDLREFAADSEQSDDLTIIAIHRP
>SEQF1086_CAE42507.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLRPGILAPLALLLGLAWPIAAASSPPPVAALSSGVALTSPRLPPPSHTSGRKWRIGYVGSGEYEEYPRTLYAIARALQ
QLGWLRIDDMPEITDMRKAWLYLATHARSNYIEFVPDAWWQPGNFDTALRPAVREAVAARLHGAKDIDLIIAMGTWAGQD
MVELGTPVPTVVVSSTDPISARIIPSAADSGQDNLHARVQPDHYQRQIQLLHDIVPFKTLGLVYEDTEAGRTYAAIDKVA
ALMPALDFSVKRCDARATGIPIATATQNVLACYQKLSSEVDAFYVTEHRGITSTSVKQLAALLRAARVPSFSMQGSDEVK
AGLLMSLAKADYSSVGMFHAQTIARIFNGEKPRSISQVWNAPAKIAINLETARRIGFDPPVDILLAADEVYEAEH
>SEQF1086_CAE42508.1 hypothetical protein BP2232 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGGPHGLSGLDNGYNLLETAFAPVNGGAGGLRRLAEAVRRELRDTQLALAAEGAMLINAAEHPAASLDADWYRRVRVPRP
IYEELVGQRGWLHRIGIDAKAQNSPCTSVPVAIAARCLNVVLALAPAQIAMFANSPLEAGRVTGLKENRLTLWPRMFRGA
RYLGDDLLHRLPARPFRDLGDYFRWMFGGLTASRALPPGDACDYKNADVACLVGAPSLAEFLYAGAWSARNLNDGGSVRL
AARSEHFVYSQFAQFLDARWRYRMPIVPALPALLRAWDRQGGLEALFEQAGAQGYIEGRAPGAVFADADLLSSAGDAVAA
SAPMAASALQLGLLRNLHDAEALVRRWGWLRLRALRDRAIALALDDAQVRCLCQQVVAVAEGGLAGDEQQWLDYVRYVVE
TGETAADRMLRLWRQARGTPEMRRAQACRQRAVLS
>SEQF1086_CAE42509.1 hypothetical protein BP2233 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPSGLSCRHGTEEPKASHSAYSMFPLRRTRYTQGFETTAHRMNFQIPPALPALELDVFARAASQGETLYVTKAGEQFQVI
ASGTTPSGRNVSWVATDEDTLVMFSSALALAYGTGIARAVAKELDLHAVPTTSLSARVVTRAVDMAETSRHALQGVDFLT
FLSWSARADAAGFRQVCHDTGVSPDQISGTLRATIDESMQQRFASAAQSGKAPVSAHTAQEWLREVLAHHLV
>SEQF1086_CAE42510.1 putative RNA polymerase sigma factor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVSPPSSGLPASLEKPDNAYPDIATERSDQQLLSSLVAEHAGRLQRFIAKHIGHSSDVEDLAQQAFAEAARAYQSFRGDS
QLSTWLYGIALNLVRNHLSRAPERRYEFTSDASLGVMPCSAPNPEAVTEQRQRMRLLREALEQLPESMRDVILMVGVEEL
SYEEAAALLSVPVGTIRSRLSRARCALREALRERGYDSVP
>SEQF1086_CAE42511.1 putative type III secretion protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAIGRLGYLVRGAWAGGVMLLAAGSAWAAPNWPLAPYSYYAQQQSLSDVLREFAAGFSLALQQGKGVQGVVNGRFNARTP
TEFIERLSGIYGFNWFVHAGTLYVSRTSDVVTRAVDAAGASPSALRQALLQLGILDERFGWGELPAQGVAMVSGPPAYVA
LVEQAVAALPKGAGNQQVAVFRLKHASVSDRVIRYRDQQVVTPGMATMLRQLILGAGPGNDAALAAVAAPLRENPPVFGD
AAADGNAPLAGAAQAAGRRLSEPSVQADTRLNALIVQDIPERMPIYRALIEQLDVPSTLIEIEAMIVDVNTDLVNELGVT
WGAQIGTTSLGYGDLGLRPGNGLPVDGAAADLAPGTLGISVSTRLAARLRALESDGQANILSQPSILTADNLGAMIDLSD
TFYIRTLGERVATVTPVTVGTSLRVTPRYIAAKGGRQVELAIDIEDGRVLQEYPIDGLPRVRKSSISTLAVVGDEQTLLI
GGYNNRRDEEQVEKVPLLGDIPGLGFLFSSKSRAVQRRERLFLIRPRVVAIEGKPVFSPVAGTSQVFMSTGWGGHGSSLS
IAPGEGGHTQVRHDARAGRPVRLVPDSLHVEYGEAGEASP
>SEQF1086_CAE42512.1 hypothetical protein BP2236 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTATIHPDIADYARRHGLEPSVDADGGLAVRIDGRHRVRLIPAEDGMLVLRARLAELPDGWQARAAQLRRAGLLASAMAP
ATDAYCGIDQGETALYLHQRVAPAGSALAVDEAVGEFVNALATWKRAMAQWQ
>SEQF1086_CAE42513.1 putative type III secretion protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGEKTERPTPKRLRDSREKGEVAHSRDFTQTALICALFGHFLINAPSILASLRALILAPAAFADQGFAVALGPVLTEIL
DQAVRVLAPLILIVLGVGMFAEFLQVGVVLAFRKLKPSAEKLNPAGNLKNIFSARNLMEFIKSVCKILFLAVLVTLVIRD
SLQPLMAVPHSGLDGLRTGVGRILQVMVWNIGLAYGAISLADLAWQRYQYRKGLRMSKDEVKQEYKEMEGDPHIKQQRKH
LHQELIMHGAAAQVRRATVLVTNPTHLAVALYYAAGETPLPRVLAMGQGAVAALMVEAARDAGVPVMQNVALARALHDQA
EVDQYIPGELVEPVAAVLRAVRQALKEQT
>SEQF1086_CAE42514.1 putative type III secretion protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHTEFNFVEAKVFLGTLAMTQPRILTAMLFLPMFNRQFLPGPLRYAVGACLGLIVVPQLAPQYAALDIDWPRLLALLAKE
AMVGMFLGWLAALPFWIFEAIGFVIDNQRGASLGAILNPATGNDSSPMGILFNLGFMVFFLTAGGFGLFATMLYDSFGLW
NIWAWWPSMPAQGAVRMLDQFSGFAARVLLLASPAIVAMFLAELGLALISRFAPQLQVFFLALPVKSALVLFVLVLYMAT
LFQYAGEILGSVGRIVPFLHSAWPGP
>SEQF1086_CAE42515.1 putative type III secretion protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQTQDLVSFMTQALYLVLWLSLPPIAVVAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFATLMLAARWISAEIYNFTIAV
FDAFHRIH
>SEQF1086_CAE42516.1 putative type III secretion protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDTDPFSLALFLALLALVPLIVVMTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQAL
TAQAGESGTAAPMALDAVLGVAERGVGPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSEDNLLVLTPAFLVSELTA
AFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFLFVMVDGWTRLIQGLVLSYR
>SEQF1086_CAE42517.1 putative type III secretion protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRVAGGAAAQAAGMVDLAVPRLSAGEAHALSRIACHGARFDVRLGEPAVRWHCALTPCVHGDLADGEMESLQLQWAGTY
IGLTVPRAAAAGWLAARLPRFSGVELPEPIAAAALEAMLEEVCRGVAGLDQQGPVRVARQGGTPPVQPHRWTLTVRAPDG
GVWRAVLACDAWALQAVAAALDSVAPADGRVNPERVPVRLRADVGAASVTAGQLRTLRAGDVVLLAQYRVSDAAELWLSA
GPSAIRVRAEHASFRVTQGWTPIMTEPATPDPGETPAQADATLDTDQIPVRLTFDLGEREFTLAQLRSLHPGCTFDLERP
IADGPVMVRANGLLLGSGRLVDIDGRIGVVLQSVRPGLA
>SEQF1086_CAE42518.1 hypothetical protein BP2243 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNQPDGLGSPMAGGGQRMGVARTPYARQPDRDAQRAFEREMEQEKAKEELPGPQRLAPGPACVGWLASMEPAAGRPPASL
AQALASVAAGLAVGDVLEGYREARIVVDDTLLPDTTLSVREDGGWIVVAFACRQRDACERLHACADRLAMELALELARDV
EVAVACDGEPHERVARAQRPWR
>SEQF1086_CAE42519.1 putative type III secretion protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDLESLLAIKHFRADQAQLALKRQQQACAVAAAAQRQAQGRLDDCRLWAGQLENRLYAELCRRIVKTRDIDEVLQRVGHA
RDRQASLALQLDDAVRRHEHEIQLLAQQREQHRECFQAQQRIAELVRLQQVEAAALRESQEDREIQEAIELSARGRDDAS
RAGDGLARL
>SEQF1086_CAE42520.1 putative ATP synthase in type III secretion system [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRQYHYITEMMRVALQDLSTLRIKGRVVQVVGTIIKAVVPMVKIGEVCLLRNPGEDFEMHGEVVGFVRDAALLTPIGDMY
GISSATEVIPTGRTHMVPVGPGLLGRVLDGLGRPLDAAESGPLHAHKFYPVFADAPDPLTRRIIHAPLELGVRVLDGLLT
CGEGQRLGIFAAAGGGKSTLLGMLVKGAAVDVTVVALIGERGREVREFLEHELGPEGRRKSVIVCATSDKSSMERAKAAY
VATAIAEYFRDQGQRVLFLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFATLPKLMERAGMNQTGSITALYTVLVEGD
DMNEPVADETRSILDGHIVLSRKLGAANHYPAVDVLASASRVMNAVVSPRHKYLAGRMRELMAKYQDVELLVKIGEYKQG
ADASTDEAIQKIGQINAFLRQLTDEREAFEDTVLRMAEIIGPES
>SEQF1086_CAE42521.1 putative type III secretion protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAFLVPRPSLIQAVRPGRADPATDVLRAEDYAELLSAAQIVAQAHRRAGEIVAEAREEFERERRRGYEEGRREALTDQAE
KMIETVSRTIDYFAGIENEMIELVMSAVRKIVDGYDDRERTVIAVRNALAVVRNQRQMTLRLHPDEVDVLREGMNQLLAA
YPGVGYLDLLPDARLAPGACILESEIGMVEASLEDQLCALRAAFERTFGRRG
>SEQF1086_CAE42522.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTEASVLLSERLMIFNLLPSLTLHASRHDEMFPADWVRALCNADAALANAWHRHWSRWILCELGLLNQPVLSLDPPQLKV
ALLSTDALRTCAAHAGALLCAPRLRRAIDGAEVRTLHAALGRDVMNFAVSSAARALHDGLAASSDWTLAATVQAAQKLGW
ALLRDAVQGAADEIALRCALKLPRDLDPAPVLPPEAALALVLSMLEILDAEWLSSFPAQA
>SEQF1086_CAE42523.1 putative type III secretion protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAIGAIQRYRRGAGWAALVLALALLAGCGARVELLGAAPENEANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSL
EILRASGLPREQFDGMGRIFRKEGLVSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGEPATPSTAGV
FLKYRDGQSLDALVPEIRKLVTHAIPGLAEDRVSVALVVAQPVQAAPAPVAWRRVLGVQVADGSVLRFSLLLLLLPVLCL
IVAGAALYVWRTRWSRGEGRGGAGAGATEGAGHD
>SEQF1086_CAE42524.1 putative type III secretion protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNLDLTAINAVQERLLAGSFDMPRSPAMADQARFELALGEMPGASAPNGAIALAPVALDEPLGRRILGQLRGGLADVAGK
WRAVQTGLAEVSQAPTVVGMLDLQARLLQASVEYELVGKAIGRATQNVDTLARMS
>SEQF1086_CAE42525.1 hypothetical protein BP2250 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHSDSGSDSGSDSGSGSPMVSSIHPSEPIQPMEHVLEEADARLLTEVGFLAAAVSDLTRADAIFNALQRVRPGRTHPCIG
LAVARMNAGLPDEAAEILANFQPAQPEDRSELDAWCGFALLLAGRSDEARRMLQRAIDAGGEAARLAQVVLDSGPAMMRP
APLQSEPLPGAPG
>SEQF1086_CAE42526.1 putative regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTVHDDAAAALRARLDALPGSRRLTAEQLEVIYAMAYAHVARCEYGKALPIFAFLAQYGPTRKHYWAGLALCLQKTDRPD
EARNIYALILTLYPDSADAVLRTAECELALGENERAQAALFGAIAIDAESGQPGPVSHRARALLDLISVSHPE
>SEQF1086_CAE42527.1 putative outer protein B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRMTVMSTTISTAPSGAALAPSRIDMRAPEPGSAGEGAGILAPVTTLALAAGRPALPASPSLRTAPVLDPPVRDLSPADL
ADLLRVLRSRAVDGQLATARENLQDAQVKAKQNTQAQLDKLDAWFRKAEDAESKGWLSKVFGWIGKVLAVVASALAVGFA
AVASVVTGAAATPMLVLSGMALVSAVTSLADQISREAGGPPISLGGFLSGLAGRLLTALGVDQSQADQIAKIVAGLAVPA
VLLIEPQMLGEMAEGVARLAGAGDATAGYIAMAMSIVAAIAVAAINAAGTAGAGSASAIRGAWDRAAAVATQVLQGGTAV
AQGGVGVSMAVDRKQADLLVADKADLAASLTKLRAAMEREADDIKKILAQFDAAYHMIAQMISDMASTHSQVSANLGRRQ
AV
>SEQF1086_CAE42528.1 putative outer protein D [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSVSPTSPGSFGAGPVFDSELQAPAPSAQRRGGAAPVPPPVDRRGVEPGDPTLGMLPAPDLLAGGAVSRTRAALDDLDAA
RLGEDIYALMAVLQQASQQMRDAARIARDAEATRQTQALGDAASQMRQAASERMAGAIVAGAMQIAGGFVQLGAGLAAGL
QAMGGAAAQAKGAAFSEQASTSRKVAAGLHDAPELQATVQARATQLEAQAASFGADAARSSAKSQRVSSVAQAGAAAAGG
IGGLTSAAQERRAAEHEARRAELDVEAKVHETASRRADEAMQQMLDIIRGIREKLAGMEQSRSETARSVARNI
>SEQF1086_CAE42529.1 putative regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPKSADQGGSPASASHEALRHILDAGASMGGLQGLDEAQQQALYAIGHGAYEQGRYADALKMFCLLVACDPLEARYLLAL
GAAAQELGLYEHALQQYAAAAALQLDSPRPLLHGAECLYALGRRRDALDTLDMVLELCGSPERAALRERAELLRRSYARA
D
>SEQF1086_CAE42530.1 hypothetical protein BP2255 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQEQGIQSIMRAAEELVEQTRQALYSVDEIYAHVGVDPARLRNLAVEQARIEAEAQAAFRDDLADIEREAARVKAACTDA
PQARRVLHNHV
>SEQF1086_CAE42531.1 putative secreted protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSIDLGVSLTSQAGGLQGIDLKSMDIQTLMVYVQGRRAELLTAQMQTQAEVVQKANERMAQLNEVLSALSRAKAEFPPNP
KPGDTIPGWDSQKISRIEVPLNDALRAAGLTGMFEARDGRVTGPDGRGTQVVNGTGVMAGSTTYKELESAYTTVKGMLDT
ASNTQQMDMIRLQAASNKRNEAFEVMTNTEKRRSDLNSSITSNMR
>SEQF1086_CAE42532.1 putative outer protein N [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRIDAAPNPFHAAMQGRHDASANTSSGWLQGQRIAPAPTGISLADAAEELSLHMAQAAEEKHHSERKVTAERPMLWLDA
AQLAELFSHTHDPDAQAKLEALTAELLRGRGAPMQLAAQAFPGVTQQYLALQHALQRGEHEDAAPHALEALRDALADLEL
AHGPEIRAGINTLPTAGAFARSADELAGFQHAYRDIALGQLSLARTLDLVLERYGNDDIHGALGALIQALGHDLAAATPS
TDGVRLQVLASDLYQVEVAATVLEECNALKQRLGNAGSQECADAQGLMRDLVGISEDKWIAPARFEKLAERHGANALSER
IAFLGGVRQILKDLPTQIYADMDVRATVLAAAQDALDNAIAMENA
>SEQF1086_CAE42533.1 hypothetical protein BP2258 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTADRALHQFGQDIGIEGLAFGPSGSASLALSNGRRLGVECVAGAALVHLAQRVERDAASVLLAAWKRAHGQRGSAASI
QTSLWSEGSEDWIVAQTRLPERSLDAAALRLAVLGLTNWLDRLEA
>SEQF1086_CAE42534.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSAVPGMHAMHLGLERGVDHIVRGPRCEPAPTLPPERWLEPPATGAVDHLKALLVRPDLSAMLDESARPRLTDGALFQP
AQFERALAQARDELSRAMELHAGNTAPALSRALHVLNEAGKLRDLAAMYRSALYQG
>SEQF1086_CAE42535.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMPHTLPSPSLQVRELLQLLAHHYQLQRQWSKTVALLAALDALDAIDSQSLLALALGYLHQGEPRMALVTLDKRALRATP
DAAGHLVRAQAMQALNRPDDARQAMRDYMALRAASCASATPP
>SEQF1086_CAE42536.1 putative type III secretion pore protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTSKKSIRRLQRAVALATSRNDIVLAVLIVAIVFMMILPLPTTLVDVLIGANMTLSAVLLMVAMYLPSPLAFSSFPSVLL
VTTLFRLGISIATTRLILLQGDAGHIIETFGNFVVGGNLIVGLVVFLILTIVQFVVITKGAERVAEVAARFSLDAMPGKQ
MSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIVAVNLLGGMLVGVLQRGLSAGEAVQTYAI
LTIGDGLIAQIPALFIAICAGIIVTRVQTGDGPSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAAVG
TIGFVLLRASQRPPEGAEPALAGMAADGQPRTRAPADGQAEFAPTVPLIIDVAARLQPRFEPATLTDDLLQIRRALYFDL
GVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQNLQALRIAYETGAAFLPDTPTIWVAASLTGALRD
AGIPYLGISQILTWHLAYVLKKYSADFIGIQETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRAV
LEALVEWGQKEKDTVLLTEYVRIALKRYISHKYTSGHNILPAYLLAPKVEETVRAAIRQTAAGSYLALDPDTTRRLVEHI
RQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLSYQELTPEINVQPLGRVDL
>SEQF1086_CAE42537.1 putative type III secretion protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTALEFRVLSGAQCMARCPAVHGARVGANPHCDIVLTGEDMPEVAGWLEIDQSGWRLAGAVTPGLDAQAPCPPAAFNEP
VELGAAWITVAAPSAPWPAPPEPCGPDGSDTALHDVPGSTSPPSVAALMPRRRAGRPWLALGAAAAVLLVGLATALVSVT
TPATPPAAPPPTPTAPLVRAAALIDSLGLTEQLQAAYGRGGVLTVTGWVHDETEFARVARALAQLAPRPAMQVSRQDEAR
ALACDVLATFGVRYMARPYGNGRLAISGIASDAHERAAALHAVRMRLPGMTILGRDVRLADEVSAQFAAQLADERLDGVK
LSWHADRLDADPGGLAAGRMARLRELVAAFNQRNYDVVRLPATAARATRDHVPFEIRSVVSGPQPYLMLADGSRLLVGGL
RDQYRLTAIESGRLVFDGPEPVIVTR
>SEQF1086_CAE42538.1 hypothetical protein BP2263 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTSVLALTELEVRLASPGGSALRDTLLSQLGELETRLRVRLHDGVGRDTYPVWRDALAAATAARQVLLQRPTGPDNPPA
SVLTRLSNEQCAEGDKHGH
>SEQF1086_CAE42539.1 putative type III secretion protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAINLGGDAGRVTMQSVNQAVNTRLNAHERDLRSRLEALSARGDGAVSTSDLLIVQQEMQSWVVMIDLQSTVVKQVADSL
KGVIQKAS
>SEQF1086_CAE42540.1 hypothetical protein BP2265 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRPTQARLAMTDTAYHQLIADFGRLIGIDSLNPGAGGLCQLIFEPCAPVFIAPVHARTEIMISCVLGTADAANPASMARA
NFMQAGSGVVACIGGDGLFYLQQAIPLSRATPAILLDHCERLLQEASRWRVGDHDGCATSAPNIAALTRGV
>SEQF1086_CAE42541.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE42542.1 transcription elongation factor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAIPLTVRGAERLQQELHRLKTVERPAVISAIAEARAQGDLSENAEYDAARERQGFIEGRISELEGTLSNAHLIDPTAL
DAEGRAVFGATVEIEDLDSGDRLTYQIVGDVEADIKSNLISVSSPVARALIGKSEGDVVEVKVPAGVREYEVIGVRYL
>SEQF1086_CAE42543.1 methyl-accepting chemotaxis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPMLERIKVRTAMVAVFACFLAVLMLSGALTWRNAGRSAAEIEGLNQVAVNQVDPLFEASGAAQRQAATQFQRYVDVPKE
PAAAELAATLQTRWRAYQSVLDELAAAVDAGQAEPALAAMHRAQQAEHAFQRDMEAFLARVQAHSDEVRSGAEDTHVVAR
WSAIALTTLGVLLTLAGWLFVRRAVLRPLLEAGHHFDRIADGDLTARIEVRSANEIGALFAALKRMQEGLTRTIAVMRRG
VDEINVGAAEISAGNANLSSRTEEQAAALEETAATMEELATTVKQNADNAAQANQLAAVSMQVAQRGGESVAQVVQTMHG
ISASSRQIADIVTVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLAQRAAQAAKEIKALIESSVATVRAGSQ
QVASAGGTMDEVVASVQRVADIMGEISAASAQQASGIDQVSLAISQMDETTQQNAALVEQAAAAATAMEEQARHLAAAAA
VFRTQGGAFIDVAAAPLAGPAGGHAALPPAAAH
>SEQF1086_CAE42544.1 putative xanthine/uracil family permease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNTYFPRWRLADDTVPGAVIAPDERLSWPKNIAMGAQHVVAMFGSTVLAPLLMGFDPNVAILMSGIGTLIFFLFVGGRV
PSYLGSSFAFIGGVVAVTGYVAPGANANIGVALGAIIACGLVYALIGLVVWAASARGNGARWIEAMMPPVVTGAVVAVIG
LNLAPIAAKGAMGSSGFEASMALMTILCVGGIAVYTRGMVQRLLILVGLVLACVIYAVCANGLGLGAPMDFAKVAAAPWF
GLPSFAAPVFEPQAMGLIVPVAIILVAENLGHVKAVAAMTGQDLDRYVGRAFVGDGVATMVSGAVGGTGVTTYAENIGVM
AVTRIYSTLVFVVAAVIALVLGFSPKFGALIQTIPGPVLGGMSVVVFGLIAIAGARIWVVNQVDFSDNRNLIVAAVTLVL
GAGDFSVKLGDFSMNGIGTATFGAIILYALLGLARRR
>SEQF1086_CAE42545.1 putative regulatory lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQALRPVLAAAIMAACAPALAGTVTVITSFPKDLTQAYKAAFEKAHPDIKLEILNKNTVSGIAFVRETPAGQRPEVFWAS
APDAFEVLGRDKLLAKAPDVANPAVPDKIGSYPINDPSGMYMGQALAGYGIIYNTRYIKANKLPAPVEWKDLLAPHWFGH
VGITAPSRSGTMHLTVETILQGEGWNDGWGTLLRMSGNASAVTERSFGVPDSVNNGQFGAGPVIDFFGLSSKYSKFPVDF
VYPSETAIVPANIALIEGAKNTEEGKQFIAFTLSQAGQELLLEPKISRLPVLPYAALAGKIPPGYPDPAEIAKRSKVHFD
ADLSQARYYVVQSLFDQTITFRLKDLQAATKAIYDAEAKLGERAGQGKAAELLAQARQLAWTPLVDAERAADPAFLKLFA
GNKKDAAVNQQITQLEGEWNGKARANYEQAQKLAREAAAL
>SEQF1086_CAE42546.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE42548.1 putative periplasmic protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRIPSILLATVLAAATGVAAANTTLTVYTALEADQIKAYQAAFEKAHPDIRIQWVRDSTGIVAAKLLAEKNNPKADVIW
GLAGTALGLMDKEGMLLPYAPKGLDQIAANMRDGKDVPAWVGMDAYAAAVCVNTIEASKQNLPMPTSWQDLTKPEYAGKI
VMPNPASSGTGFLDVSAWLQMFGEEKGWAFMDALHKNMGSYTHSGSKPCNMAAAGEYPIGISFDYRAAKLKADGAPVEAV
FPSEGLGWEVEATAIVKGTKHLEAARKLADFSASRQANELYKSNFAVLAIPSVATVNPHLPANLSERMIKNDFVWAATNR
DRIIAEWSKRYDGKSEPKKK
>SEQF1086_CAE42549.1 putative hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAMTLATLPVRLEALVFDWAGTLVDFGSFAPTKVFVDAFARFGVQISLEQARGPMGMGKWDHIRALCNDAAIARQYQEQ
FGRLPTDEDVTAIYERFLPMQLEKVAEYSQPIPGAIELLHGLRQRGLKLGSCSGYPAAVMQRVLERAEREGLALDYVVAS
DDVPRSRPAPAMALRNVVELGIADVAGCVKVDDTAPGVEEGRRAGMWTVGLLLSGNAAGLSLEQFLSLDEAGREAARDRA
RAELQAGAPHYLIDTVADLPPVLADIETRLAAGQRP
>SEQF1086_CAE42550.1 putative ABC transport permease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRALPAWTGTLGRWGGQGLFVAALVLFLALPLLAILVKAVAPGADGAAGVGVLAGIVDDSAFLGLVWRSLAVGAATVAL
VVPCAYAYAYCLTRTRAPGKGALRLVALLPLLAPSLLPGIALIYLLGNQGLLKALAGGATIYGFWGIVIGEAFYTFPHAL
MILLTGLALADGRLYDAARAMGAGPWRTFATVTLPGTRYAVFSACCLVFTLTVTDFGVPKVVGGDYNVLAMEAYKAVVGQ
QNFSKGAAIGLLLLLVPAMLTFLLDRHLRARHGAGLSGRALVYAPGTHRLRDACFLAIAALIGLALLTIVGVAVWASFVK
MWPYNLSLSLRSYDFDNMDGGGWLAWRNSIQLAAWTALAGTALVYGGAWMMEKLPTRGVPAAALRGTARMLALTPMAVPG
LVLGLGYIFFFNSPGNPLGALYGTMTLLVVCTVVHFYTSAHLTAVTALGALDTEFEAASASLKVPAALTFLRVTLPMCLP
AVLDTARYLFVSAMTTVSAVVFLYSPQTVLAAVAVLNMDDAGFIGPAAAMCTVIMATSALASLLLHLASRALVARTQAWR
RAPAA
>SEQF1086_CAE42551.1 putative ABC transport ATP-binding subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRGSDAFLSIRNLVKHYGAHRALADVSLDIGAGELVCLLGPSGCGKTTLLRAIAGLERQDGGAIVLGGRDISNEPPQAR
DYGILFQSYALFPNLTVAQNVAYGLSGRRGDRERVAARVDEMLALVGLSGAARKYPGQISGGQQQRVALARALAPAPSLL
LLDEPMSALDARVRDRLRGELRALQRRLSITTLMVTHDQEEAMVMADRIAVMNGGVIEQYGTPRELYRDPRSAFIADFVG
EANWLRYQRIDAHRARVGQLELDVEQPLEADSGRLFVRPEAVRLSASGTPASANTVLADVLDGVFLGRGYRISLRLEGIP
GATVQSVVSAETGDALLGAHAAGRCWVELPRHALSAYA
>SEQF1086_CAE42552.1 putative transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLVAELKSFHAVARCGTVTKAAAQLGVSQPTVTGQLRQLESRYGVELFHRQGRGLRLSDAGHRLMPLVEKLVQQESEIEF
RLRDASDLREGCLRVGATGPFYIMDTVRRYNQRYPAIELSVAIGNSQSMLQALHDYRIDVATSSVAMNNPNLYRRAIAAD
PLRIVVHRDHPLAARASAGLADLAPYALLLREPGSMTRQLTEEALQKAGVAPARVLEIGSRESIRQAILCNLGVSLIPSR
EVPAQAELATVAIADTEVLMHEYLYCLRERQPVQLIARFLELAPSAA
>SEQF1086_CAE42553.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALTLQDIEQIFLERGHRAYDGEPVSHLKHALQTATLAEQGGAGPHLITASLLHDLGHLIAAHPGTPSLRGLDDKHQYFV
LPFLRGLFGNAVLDPIRLHVEAKRYLCFVEPAYATRLSADSRRSLTLQGGSFDAGQAVDFASMPGAPDAIRLRRWDDQAK
QPGMQTGSLTHFLEIAEGVAGRAKLAAIW
>SEQF1086_CAE42554.1 putative sulfurtransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTMTLISAADLTARLDAGGVRVFDVRHDLADHAAGRRAYEQGHIAGARYLDHEAELAAPRSGSNGRHPLPERDAFAGLMA
AHGVTPETLVVAYDASGGMFAAHLWWMLRWMGHERVAVLDGGWQAWTAAGLPTEAGATPAVSAQPGARAGQSLAGTVDAA
AVLANIGQPAFTVIDARAANRYRGEVEPMDPVAGHIPGALNRPNTENLQADGRFKAPAQLRQEFEALLGGRAADGIVHQC
GSGITACHNLLAMEIAGLAGSRLYPGSWSEWCSDAARPVAKGA
>SEQF1086_CAE42556.1 heat shock protease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRIFLFLITNLAVMVVLSATMRILGVDRFLTAQGLNLTGLLIFSAVIGFTGAIISLLMSKPMAKWSTGARVIDPNAPAN
QREAWLLDTVHQLADRAGIGRPEVAIYQGEPNAFATGAFRNDSLVAVSTGLLDSMTEEEVAAVLGHEVAHVANGDMVTLT
LIQGVVNTFVVFLARVVGYFVDRAILKNERGVGLGYYATVIVCEIVFGILASIIVAWFSRQREYRADAGSAHLMGSREPM
IRALARLGGLEPGELPKSFEASGISGKNGISAMFASHPPIQARIAALQHARLG
>SEQF1086_CAE42557.1 quinone oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MASNIVKAVRIEQHGGPEVLQVVDVEVPPPAANEVTIRQHAAGLNFIDIYFRTGLYPHPLPHGLGFEGAGVVEAVGADVR
HLKKGDRVAYGQSPLGAYAQARNVPAAQVVKLPKGIGFDEAAALMLKGLTVQYLFRQTYRLQGNETILFHAAAGGVGLIA
CQWAKALGVKLIGTVSSPEKAELARAHGAWATIDYSRENVVERLLELTGGKKVPVVYDGVGKDTWEISLDCIEPRGLMVS
FGNASGPVAGVNLGILNQKGSLYVTRPSLGVHVNTHEKLAAAADELFGLVLKKKIKVRIDQRYSLAQAGDAQTALAGRKT
TGATVLTLD
>SEQF1086_CAE42558.1 conserved hypothetical integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRNRQLSDPSRFSGMAAGFFMATLGAVLFSGKAIVVKFTYRYGIDAVTLIAFRMLFAMPFFAAVAWWQARRAARGELPV
LSWRERGQLCALGLLGYYLSSFLDFLGLRHITAGLERLILFLSPSLVVLLSAWWLKRPVTRRQWGAMLLSYVGVALVLSH
DLSQSGAGADVLTGSFFVFCSALSYSVYLICSGELVERVGATRLVTYAMLVSCVASLIQFFLIHPASVLVQPAAVYGYSV
IHATVNTVLPVFMLMWAVALVGAPTASLLGMVGPVSVLFLAAWFLDEPITVWQLAGTALVLAGVFVLAGRRRPARP
>SEQF1086_CAE42559.1 conserved hypothetical integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRQRALVYIHIAAVLFGLTGVFGELIQAGAAVITLGRALFAVGALAVFARMQRRSLLGVLTPAQLFVLVIAGCLLAAHW
VTFFISVKVGGIAIATLGFASFPAFITLFEGLVFRERVRLAEWLLLGLVTAGLVLVTPSFDLADQGTVGLVWGLVSGFSF
AMLALTNRRAAAGMDPMQVACWQNAVVALVMLPFAVVHLPALHALDWLWVALLGIFCTGLSHYLFVSSLTRLNARSAGLV
IALEPVYAIGFAWILFTQVPTLRMLAGAALIVAAIVWSGLRKSTH
>SEQF1086_CAE42560.1 putative transcriptional regulator (MarR family) [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNPPRSASSEPFAHYRADSICTRDDNAGFLIKLVSNSLNRMLDLEMAPLGLTAMQWRPLAMIASGRADTPAELARLINVD
TGAMTRTLDRLEAKGLLRRVRSQEDRRVIKIELTPEGQTKAREIPAYIAKVLNHHLRGFSTEEVAQLQHMLRRMIANGSV
GG
>SEQF1086_CAE42562.1 putative multidrug resistance protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSPSPTTHPARKRLLWLATGVFAVLAIAYAVWWALFGSHFESTDDAYVHGNLVQITPQVPGTVVAIEADDTEAVTAGQAL
VRLDPADTDVALQQAEARLAQTVRQVRTLYVQNDALAADIDVRQAEIARAQADLKRAQSDLQRRQTLAKSGGVSGEEILH
AETALKSAQSALAQARANLAAAQAKLATNQALTEGTTVAEHPDVRNAAAQVRNAWLNRSRTVLPAPVDGIVARRAAQVGQ
RVAPGAMLMNVVPLDQIWVEANFKEGQLRHMRIGQPARITADLYGGSVVYDGKVIGLDAGTGSAFALLPAQNASGNWIKV
VQRVPVRIALDPEQLKTHPLRVGLSMDVEVDVGAEEGQPVTAAPRAEPALSTQVFEPAHDEADALIARIIQANLAS
>SEQF1086_CAE42563.1 putative multidrug resistance protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDKPKSSAGGAPYPPLEGATRIIGSIALSTAVFMNVLDTSIANVSIPTISGDLGVSTSQGTWVITSFAVANAITVPLTG
WLTQRFGQVRLFLTSTLLFVLASWLCGFSPTLEALIGFRVLQGAVAGPMIPLSQALMLASFPKHKAGMALAVWSMTTLVA
PVAGPLLGGWISDNYTWPWIFYINVPVGLLAAWISWRVYRDRESQTRKLPIDKVGLLLLVVWVGALQIMLDKGKELDWFA
SPVIIALAATAFVAFVFFLIWELTDAHPVVDLRLFKERNFTVGALTLAVAYGVFFGNVVLLPLWLQSNMGYTATYAGMVT
APVGLLAILLTPIVGKMLATRDPRQIVTVAFMVFALVCFMRAGFNTQTDVRTLMVPTIIQGAAMAMFFVPLTSITLSSLD
ASRIPAASGLSNFARLTAGAFGTSIATTMWDNRANLHHAQLTEITTPGQQAFDHTLGTLQNGAGMSHQQALTVINGMIDT
QAYTLSALDVFYASAAIFLLLTGLVWLARPKSAKSAGGGAAEAAAGAH
>SEQF1086_CAE42564.1 tartrate dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAKHRIAVIAGDGIGKEVMPEGLRVLEAAATRFGIDFQWDHFDWSCDYYARHGKMMPDDWAAQIGGHEAIFFGAIGWPD
AVPDHEALWGSLFRFRRDFDQYINLRPVRLMPGVPTPLANRKPGDIDFFIVRENTEGEYSNSGGRLFAGTEREVVIQESV
FTRVGADRVLKFAFELARKRGKHLTAATKSNGISISMPWWDERVAEMAASYPDVRWDKYHIDILCAHFVQHPDWFDVVVA
SNLFGDILSDLGPACTGTIGIAPSANLNPERKFPSLFEPVHGSAPDIYGKGIANPIGQIWSGALMLDFLGYPQAAAAVVA
AIEQVLVDGPRTPDMQGKATTTEVGSAIAALVAAG
>SEQF1086_CAE42565.1 putative transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRELILSECLLQRLERRGATPLSRQIYDLLRDLILAGDLPAGTKLPATRALAVDTGLSRNTVLHAYDQLLAEGYLVSAFG
SGTFVSDTVPATPEPPAPPEVEAAAQHFALSRRGTKLVREASASDRQWGAFVAGVPDVSLFPRAVWQRLQSRRWRQAPPE
LLTYAYGAGYMPLRRALAEHLRLSRSVKCDADQIVVTSGIHQAVSVLARLLGDNGNTAWMENPGYWGARSTLMACGITPV
AVAVDDEGMAPSAQQLQDPPRFIFVTPSHQYPLGMVMSLARRRMLLDYAHKRGAWIVEDDYDSEFRFDGRPIASLQGLDQ
HDRVLYLGTFSKTLFPGIRLAYMVLPKPLAGHVATGLSELYREGRLMDQAVLADFIEGGHYATHIRRVKQRYAARQALLR
EAVTRAFGADWPISTHEAGLHLVMRLPDGTDDLGISIAARTLGLHARPLSRYYASEQDARPGLLLGYACVPEEEIEPAFE
RLVQVITPALEHVERQQRRPVYSDKLNAEAWSGA
>SEQF1086_CAE42566.1 putative solute-binding transport protein (periplasmic) [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLTQLFKLSAAAFTLAAALPLTNAHAQTRDGTLNLIVQPEPPILIPALNQQGPTQFITGKIYESLLTYSFYLKPQPGLA
KSWEAAPDGLSYTFHLQEGVKWHDGKPFTADDVVFSLSDLLPKTHARARVILGKFLDKVEKVDDHTVVVRLKSAFPAFML
MFEPGFAPMMPKHIYAGTDYATNPANQKPIGTGPFKFKEWKRGEYVKLERNPDYWKEGKPYLDELVFNVIPDSASRAVAF
ERGSIDALRGGDVDNVDVKRLRGLPDVQYTTQGWEMFSPQAYLIFNMRKPPFDNIKVRQAVMHAFNRKLVVDNIFFGLGK
ISTSPFVPTEMFFDKNIPAIPFDMKKARALIKESGINPGDYTIRQLSFPYGATWDRLGEYTKQALEQLGFKVNVESTDAG
GWASRTGNWDFDLTTTYSYQYGDPALGVQRLYVTSNIVKGSPFANVQGYSNPESDKLWEQAAAEVDPAKRQELYNKIQAI
LVAEVANGFLVDMEFPTLYRSKVKNMVKTAIGMNETFDDVYIEK
>SEQF1086_CAE42567.1 putative integral membrane transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHRMKFLSFFASRLGKALVVVLGVVIINFFLIRMAPGDPAAVLAGQVGAGDAAYVEQLRTQFGLDKPVLTQLGIYLKGVL
QFDLGFSYRNHVPVLDLIVERLPATFLLMSAAFLFSVILGVLLGVVAARARYANKRRWIDSSVMTGALLLYATPLFWLSL
MGILLFSVMLGWLPAFGMETVGSNLTGWARVQDIALHLILPTVTLGCFFMAVYVRLTRASMLEVIGMDFVKTARAKGVSA
NRVIRAHVLRNALLPVITFAGIQLGQMAGDAVLTETVFAWPGIGRLMFDALLQRDYQLLLGIFLVTSIMVVVFNLITDVI
YRLIDPRIAAGGTQGAAA
>SEQF1086_CAE42568.1 putative integral membrane transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNGFMKRYMRNYGAVAGLVIVALVVLVALCAPLLYEESPWMMVASPLIPPFTDSAYPFGTDMLGRDITAGLVWGARVSLM
VGLLSAGVALLFGIAIGAIAGYCGGRIDDALMRFTEFFQTIPQLAMAVVLVAVVGPSVYSIMGAIALVSWPPAARLVRSE
FMTLKQREFVQAAIVIGQTPGRIVCTQILPNAMSPIIVSASFMVATAILTESSLSFLGLGDRNLMSWGFMIGAARTMIRE
AWWMSVWPGVAILLTVLAINLIGEGLNDALNPQLRKRGE
>SEQF1086_CAE42569.1 putative ABC transport ATP-binding subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTMNDQETLLSVRDLTIALPRGGDREYAVRDVSYDIRVGEILCIVGESGSGKSMSANAIMGLLPDYLQPQGGQILFRGKD
LLRQDEATLLSMRGKDMAMIFQEPLSALNPLMTVGEQIGEVMRVHDAYPGPQRQRRVLELLAFVGLPDPAVLCDVYPFRL
SGGQRQRVMIAMALALEPALLIADEPTTALDVTTQAQILALIARIQKEKGMGVMFVTHDFGVVAEIAHRVAVMEQGILVE
QGPAEEVLNRPQHPYTRRLIAAVPHRRADARPPVAQDAPVLAVDKLCKTYVTGHGWFGKKRVVRAVDEVSFEVRRGETLG
IVGESGSGKSTIGKCLLKLIGIDGGKLVFNGRDIAGLSESQFRPLRKDIQMIFQDPFASLNPRQTVGRIISDGPVANGKT
RAQAEARARELLTLVGLDPSAFDRYPNQFSGGQRQRIGIARALALEPQVLVADESVSALDVSVQAQVLQLLHELQQRLRI
ALIFITHDLRVAAQICNAVLVMHRGKVVEYGTPAQIFDQPQNPYTQQLIAAVPGQHWDPTKAQTA
>SEQF1086_CAE42570.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE42571.1 aminobutyrate aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDNAELTRRKEAATPRGVGVMCNFYADRAENAELWDTEGRRYIDFAGGIAVLNTGHRHPQLMQALQAQMSRFTHTAYQIV
PYASYIQLAERINQLAPGDFAKKTALFTTGAEAVENAVKIARTATGRPAVVAFGAAFHGRTLLGMALTGKVVPYKVGFGP
FPADIYHVPYPNALHGVSTDDALAALGTLFKTDVDPRRVAAIIIEPVQGEGGFNICPPAFMQALRALCDDHGILLIADEV
QTGFGRTGKLFAMEHYGVAADLTAMAKSLAGGMPLSAVCGRAEVMDAPPPGGLGGTYAGNPLAVAAALEVIRIIETEDLL
ARGTRLGHQLRDHLEAQRHDAPEIAEVRALGAMVAVEFRQPGSDAPSPEFARQVQARALEQGLLLLTCGSDGNVIRFLFP
LTIPEAVMREALDILARTLRGQNA
>SEQF1086_CAE42572.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRPGAIPTVQIDNERVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYTRPEGVEHNVIN
PSDTEFVFVEIEIKAA
>SEQF1086_CAE42573.1 putative acetylpolyamine aminohydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHVPEQFMRLGRISAPTDVPARAETLRAMLASRGVTVDSPPDYGREPLEGIHSHEYLDYLEHAYTRWQAMRANGADPGPE
VLPNLSPYYNGRVEHAARGPCPSTSIVAETGYYLSDLSCPVGPHTWRSALRSTHCAVAAADWALQNQALAYALCRPSRHH
AHRDRAGGFCYLNSSAAAAQRLAQRCERVVVLDVDAHHGDGTQNIFYQRSDVMTISLHADPSGYYPFYTGYAHERGYGSG
HGYNLNFPLPHGARNAIFLETLDSALTALRDYRPRALVLALGFDTYKDDPISVLKLDMDAYRQIGERINGLGLPTVVVQE
GGYMVPAIGPALEAFLQGMAPATV
>SEQF1086_CAE42574.1 putative amidohydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTATALSINGQRLWDSLMELAKIGATPKGGNCRLALTELDGQGRDLLVRWMREAGLEITVDQVGNIFGRRPGARPELPS
VATGSHIDTQPTGGKFDGCFGVLAGLEVMRTLQDHDVRTEAPLELAIWTNEEGTRFVPVMMGSGVFCNIFPLETALAATD
VDGKSVRDELARIGYAGDAPVGQRKLGKYFEAHIEQGPILEAEDKVIGVVTGSLGLRWYDVTVTGMEAHAGPTPMPMRRD
ALYAATHLMQEVVRIALDYAPQGRGTVGVANVYPSSRNVIPGKVSFTVDLRHPDAARLAEMDARLRQACQALGAGDTTGY
PVGVDLRDVQHFPPTPFEPALIGAVRQQAEARGYSHMDIVTGAGHDAVYVATVSPTAMIFVPCKDGISHNEVEDADPAHL
EAGANVLLGAMLQHAGMVER
>SEQF1086_CAE42575.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAPAPAPAAARQRRLGIALFFGALVAFATFDAACKYMLQFYPAPFLNVMRYTAVATIAAFMLLRHGLPRLSATPRRGLLV
VRGLMLGTVGTCFMTALIWMPLSETTAIYFTSPMIMVALSPWLLGESVGRAQWLAVAVGFGGMLLIVRPGADLPALGTVL
MAVAAVSYAIFQLLTRKLAGQVPGHVQYAYTAFICLLMTALPAPFFLPQPWPGLADSLVIIALGLCNGLAQILLIGAFQR
VEASTLAPLNYCHLLMAVAFSTFWFGMPPDAPATAGMALIVAAGIFLVTRRAPGTPRLPVRDKESAA
>SEQF1086_CAE42576.1 putative aldehyde dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTLPPLSHWESLAAGLTLRNQAFIDGRWHDGQAGPLAAINPATGQLLAEVTACSQADIDQAVAAARRAFESGVWSRMPR
RERKQCMLRLAALIREHAEELALIETLNMGKPIGDTMAFDIPETAHTYAWYAETIDKQYDEIAPTDADALATITREPLGV
VAAVVPWNYPLLMASWKVAPALAAGNSVILKPAEQSSLSALRLAELALQAGIPAGVLNVVPGAGPVAGRALGLHMDVDCL
AFTGSTATGKRFMEYSGQSNLKQVWLECGGKSPHIIFDDCPDLDRAALAAAIGIFNNQGEVCIAGSRLYVQAGIYDTFVS
KVEACARAMQPGNPLDPASPMGAMVDERQMARVLEYVESGRREGARLRMGGERVRADSGGYYIEPTIFECARPDLTIVRE
EIFGPVLAVTRFDGEDEVVAQANASAYGLGSGLWTADLSRAHRVSRRLRAGLVWVNCYFDGDVTVPFGGVKQSGFGRDKS
LHALDKYTSLKTTWIRL
>SEQF1086_CAE42577.1 putative 2-hydroxyacid dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKIIYASCNAIDPREWTEPLQAALPEAEVVAWQASQPVQHAELAVVWNPPAELFERELGLRAAFNLGAGVDALFRLETLP
PDFPVVRLEDAGMAVQMAEYAAHALVRASRQFDAYDAQQRAGQWHPLPELDRTQWPVGVLGMGVMGTRVAQTLAGMDYPV
AGWSRSGNAPQGVQAFGGADALPAFLARTRVLVNTLPLTDETRDLLRRDTLSQLLPGAHLINMGRGEHLVEEDLLALLDS
GHMAGAALDVFREEPLPAGHPFWSHPRVAITPHIAAISLRRETVAQLAAKIRAFLRGEPVTGMVTRRRGY
>SEQF1086_CAE42578.1 putative aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGPRIITHGEGVYVFDDQGNRYLEGMAGLWSVAVGFGEQRLVEAAARQFQELPYYHTFTHKSHPSVIALAERLIGYTDGR
MAQAFFTNSGSEANDTVVKLVWYYNNALGRRDKKKIIARQRGYHGVTVASASLTGLPGNHKDFDLPLPQIRHTACPHYYR
YGLPGETEEDFATRMAGELEAMILREGPDTVAAFIGEPVMGAGGVIVPPRTYWQKIQAVCRKYDILVIADEVITGFGRLG
QRFGSQVFDIEPDIMVLSKQITSSYQPLGAVLLNTRVADVVAEHSGRLGTFGHGYTASGHPVATAVALENLRLIDERGLI
EHAAEMGALLHQELQALSSHPLVGEVRGVGLIAGVELVADKATRQPFDPLGKAGGYAYERAHDHGLIVRGIQDTVAFCPP
LIITAEQVRDMVARFARTLDDVAAHVAQG
>SEQF1086_CAE42579.1 putative sodium:alanine symporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
METVMHFLDSIVDSVNGLVWGPLMLVLILGTGLFLMLRLRFMPLAKIAAGFRLAWGNRAKGDADTGEISPFQALMTSLAA
TVGTGNIAGVATAIFLGGPGALFWMWVTALVGMATKYSEVLLAVHFRERDARGEFTGGPMYAIRNGLGPRWAWLGTLFAL
FGGLAGFGIGNMVQVNSMADALGTSFGIPDWATGVATMVLIGMVVLGGIRRIGAVASALVPFMCVAYIVAAVISLILMAD
AIPAALALIFTHAFSPAAATGGFAGAAVMAAMRYGVARGIFSNEAGLGTAGIVQAAGTSNSAVQSGLIGMIGTFIDTIVI
CSMTGLVIVCSGMWTGGESGAALSAAAFDAAMPGIGHYVIAVALTIFAFTTILGWSYLSERCWEYLTGVRAILPFRIVWV
VAVPFGAVAKLDFAWLLADTLNGLMAIPNLVALVLLSPVVVKLTRAHFSRG
>SEQF1086_CAE42580.1 conserved ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHATAHKRRPRLYTWASDFAPFRRAVMPDPIVIAKNAQTELALLPALANRHGCITGATGTGKTVTLQVLAEAFSRIGTPV
FMADVKGDLTGISQAGTASPKLQERLKNLGLPEPAWGASPVSLWDVFGEQGVPIRATVSDMGPLLLSRMLELNDTQEGVL
TLVFRVADDEGQLLLDLKDLRAMLQNVADRSAELKTRYGNVSAATVGAIQRGLLRLESQGAEQFFGEPMLDVHDLLRTDA
QGRGMVNILAADKLMQAPRLYGVFLLWLLADLYEKLPEIGDPEQPGLVFFFDEAHLLFNDAPSALLDKIEQVVRLVRSKG
VGVYFVTQNPLDIPDTVLGQLGNRIQHALRAFTPRDQKAVKTAAQTMRPNPGLDIEAAITELGVGEALVSLLDAKGRPTP
TERAWILPPGSRIGPATDAERQALRQAMPLAPKYEQTVDRESAYEVLTARAAADAPATDGARAPAGKNGAPAAPAEEGGL
MQGINEVLFGSTGSRGGKRDGVVQSVAKSTARQMARELVRGVLGSLLGSRRR
>SEQF1086_CAE42581.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAGHSKWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGADPDSNPRLRMAWDKATDANMPKDNIQRAIQRGAGGADGE
SYEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFAKHGGNLGQEGSVAFMFKHCGQFVFAPGTSEETVMEAALEAGA
EDVATDEEGVIEVVCAPADFTAVRQAFEAAGLKAEVDGVVMKALNETELTGEDAVKMQKLLDVLESLDDVQEVYTNVVFD
EAQ
>SEQF1086_CAE42582.1 phosphoribosylamine--glycine ligase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGNLQKPRNMKLLVIGSGGREHALAWRLARSPRVHKVYVAPGNGGTAQGEQLENVPLTSAEELADFVQREGVSLTVVGP
EAPLAAGVVDVFRARGLKIFGPTKAAAQLESSKDYAKAFMVRHAIPTARYETFTDPAQAHAYVDQHGAPIVIKADGLAAG
KGVVVAMTLDEAHGAIDAMLGDGSLGEAGARVVIEEFLTGEEASFIVMCDGRHVLALATSQDHKRLKDGDAGPNTGGMGA
YSPAPVVTPELHHRIMREIILPTVQGMARDGIPYTGFLYAGLMIAAGDDPDRPIKTLEYNCRMGDPETQPIMMRVKSDLL
DAFEHAVDGTLDQADIVWDRRTALGVVLAAHNYPATPRTGDVIAGLPAATEDCVVFHAATALDGDATKTTGGRVLCVTAL
GDSVRIARDRAYEAVDAIHFDGRQYRTDIGWRALKPSQQKAPKPTA
>SEQF1086_CAE42583.1 coproporphyrinogen III oxidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAVAIPAVRDYLTDLQGRIVAALEQAGGEAFRTDAWQRAEGGGGVSRLLEGGQLFERAGVLFSHVKGTRLPPSASAHRP
ELAGRGWEAMGVSMVLHPRNPYVPTTHMNVRMFVAAARPGHAESDVFWFGGGLDLTPYYPFEDDARHFHRACRDALDPHG
ADYYPRYKQWCDEYFFLKHRNETRGIGGIFFDDLNEPGFDASFALTCSVGDSFLPAYLPIVQARRDMPYGERERDFQAYR
RGRYVEFNLVFDRGTLFGLQSGGRTESILLSMPPLAQWRYDWQPQAGTPEAALAEFLRPREWV
>SEQF1086_CAE42584.1 putative nicotinate-nucleotide adenylyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGVTRIGLLGGSFDPVHVAHIALADTARQFLGLDQVQLIPAANPWQRQPLKASAPHRLRMLELAIAGHPALAINPVEIER
GGATYTADTVRALPGGPQYFWLLGTDQLQNFCTWRDWQDIAARIELAVATRPGASIAPPAELAAWLAAHRRQLHELPFAP
MAVSASDIRQRLAAGAATDGLLPEPVAAYIATHHLYR
>SEQF1086_CAE42585.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDIQKLQRAIIDALEDVKAQDIKVFNTSELTSLFDRVIIASATSNRQTRALASSVADRGRALKLTGITVEGEDTGEWVVV
DLGYIVVHVMQPAIRQYYNLEEIWGGKPVRVKLLPESTRPAMPGAGAL
>SEQF1086_CAE42586.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLIVAAVGTRMPGWVETAWDDYAKRLPADCALELREIKPEPRTSGKTPAQMMAAEARRIETALPPGVLRIALDERGRDL
TTVALSQQLEKWRAGGRDVAFLVGGPDGLDAALKASCEGLLRLSSLTLPHPMVRVLLAEQLYRAWAIMTNHPYHRA
>SEQF1086_CAE42587.1 Maf-like protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDATLAADPPRLYLASASPRRRELLLQIGLTHTVLRVPAPPGEDEPQHPGEAACDYVRRTARDKAERGQAWLHSQQLPD
LPLLAADTTVILDGIVLGKPADRADALRMLAALSGREHEVHAAVALCHQGRLYEDVSITRVRMRALEQAELQRYCDSGEP
YGKAGAYGIQGLAGAFVSHIAGSYTGVMGLPIYETAALLRSAGIAVP
>SEQF1086_CAE42588.1 autotransporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAGQARGWYGAGGRHPIHFQISAGAALMLGLLDVAGAAAVTAAQRIDGGAAFLGDVAIATTKASEHGINVTGRTAEVRVT
GGTIRTSGNQAQGLRVGTENAPDNTALGASVFLQNLIIETSGTGALGVSVHEPQGGGGTRLSMSGTTVRTRGDDSFALQL
SGPASATLNDVALETAGQQAPAVVLWQGAQLNAQGLVVQVNGAGVSAIHAQDAGSFTLSGSDITARGLEVAGIYVQEGMQ
GTLTGTRVTTQGDTAPALQVEDAGTHVSMNGGALSTSGANSPAAWLLAGGSAQFRDTVLRTVGEASHGVDVAAHSEVELA
HAQVRADGQGAHGLVVTRSSAMVRAGSLVESTGDGAAALLESGHLTVDGSVVHGHGAAGLEVDGESNVSLLNGARLSSDQ
PTAIRLIDPRSVLNLDIKDRAQLLGDIAPEAQQPDGSPEQARVRVALADGGTWAGRTDGAVHTVRLLDRGVWTVTGDSRV
AEVKLEGGTLAFAPPAQPKGAFKTLVATQGISGTGTIVMNAHLPSGTADVLVAPQGFGDRQVLVVNNTDDGTESGATKVP
LIEDEQGHTAFTLGNMGGRVDAGARQYELTASEAQADKARTWQLTPTNELSTTATAAVNAMAIAASQRIWQAEMDVLLRH
MSGLHSIGSPGGFWARGLSQRQRLDTGYGPWQKQTVSGIELGLDRRVAGGATTAWSVGMLAGYSETRRDGGAYRAGHVHS
AHVGAYVSYLNDSGSYVDGVVKYNRFRHGFDIRTTDLKRVDAKHRSHGLGALLRGGRRIDIDGGWYVEPQASVAWFHAGG
SRYEASNGLRVRADGAHSWVLRAGAEAGRQMRLANGNIVEPYARLGWAQELGADNAVYTNGIRHVTRSRGGFAEARVGVG
ALLGKRHALYADYEYAKGARFEAPWTLQLGYRYSW
>SEQF1086_CAE42589.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE42590.1 putative ribonuclease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTEDILINVTPFETRVALVEQGAVQELHVERSVQRGHVGNIYLGRVVRVLPGMQSAFIDIGLERAAFIHIADLRENRSER
SQGQTPTPIEKLLFEGQTLMVQVIKDPLGTKGARLSTQISIAGRMLVYLPHDPHIGISQKIDSESERTQLRERLQALMPP
EEKGGFIVRTQAEGATDEEIAADLEYLRKLWASVQAAARSQPAPTALHQDLTLGQRVLRDMVGPHTGTILVDSRSTSSAL
QEWARVYTPSVAERIRHYSGERPLFDTANVDEEIARALSRRVDLKSGGYLIVDQTEALTTVDVNTGGFVGGRNFDDTIFK
TNLEAAQAIARQLRLRNLGGIVILDFIDMEDPDHRETVLAELKKALSRDRTRMTVNGFTQLGLIEMTRKRTRDSLAHQLC
EPCPMCQSRGNVRTARTVCYEILREILREARQFNPREFRILAAQGVVDLFLEEESQHLAMLGDFVGKQISLEVESQYSQE
QYDIILI
>SEQF1086_CAE42591.1 putative dehydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRRPAGAARGSDAIGIARAVAGPAALTATQSPAMAARTAYLGPAGSWTHQACLDLYGADGLVPLSREALFAAYADGKVE
RACVPVATSVVGLTPYMEDVLALPRVVVVAEYPKMLGYSLLARPGTRREDIKEVHAHPVAFEEVRPWLEREMPGARRVPA
ASGGAAAQAVAASATQDKASFGPRVGASVYQLVSLADGIEEGPHNVTRWWVLGRDMPAPTGKDKTSLLACIPDARLAPLL
ADFAQAGVPILTIYERPARKTLDAHRYVVEVAGHVRDDALAGLLARQSELRVLGSYPRRY
>SEQF1086_CAE42592.1 putative transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGRKRSIDRDKVLDAAETIVVRDGAKGLTIDAVAREMGVTKGGIQYCYGSKDAMIEALFERWDKAYETLFQAVLGEDASP
RGRVRAHAEATRRADATSNAKAASLLAALIQAPELLGSTRSWYRSRLDGLDVDTEAGRRARLAVLATEGAFLLRFFGLME
MDESEWQAIFRDIRAVLVDAP
>SEQF1086_CAE42593.1 putative inner membrane efflux protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRPQNRWLVLAIIASALFLITVDTTVLYAALPRLTHDLHASAAEKLWIINAYPLVVTGLLPAMGALSDRWGPRATFTSGL
AAFGAASLCVAYAPSATLLIVARGLLAIGAALMMPATLAILRHVFTDARERALAIGVWAAIASGGAALGPVVGGVLLEYF
WWGSVFLINVPVVLALLWPAWRLVPAGQPAAHRPWDLGAAVLIMTALLGLVFGLKELGKPAPGYGVAMLAVAVGAVAMTL
FARRQRGQAEPMIDVGMFRDAGFSRGVAVALIAMLTLVGVELVLSQRLQLVQGMTPLQAALLLLPVPLAAAAAGPLAGLW
LGRAGERRVMGTALALAGVGAAGMVVGTEWPLAGQMAVLALLGAGLGGAMTAASTAVMLHAPADRASMAASIEEVAYELG
SVLGVTLFGSIMTTVYTRTLVLPADAPAAAQLRDSLDQALAAAETMAPQWAQQVLPMAYQAFDHAYAVVAATAAALLAGA
ALLTQARRRGPQSSRNCML
>SEQF1086_CAE42594.1 putative ABC transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLAWRPGRPDGCQAAGGRRYNPGHDCIKASVSLNSAARNAPAGSQPVKAELWKRVYSRVGSYWKGLVLAVLLMAGAAATQ
PTLAVIMKPLLDDGFSGAKPHYVWFLPLAVVGLILLRGICNFFSDYLLAWVANNVLRGIRGEMFERLLGLPDADFKRGDT
GRLLNRFTIDAGNVTGYATDVITVLVRETLVVIALIGVLLYMSWALTLIILVMLPVSVGIARAFTRRLRRINRETVNMNA
ELTRVVSEGIDGQRVIKLFDGYDAERRRFDFVNSRLRRFAMRSATADAALTPLTQVCISVAVGAVIAVALSQANSGALTV
GSFASFMAALAQIFDPIKRLTNLAGKMQKMLVAAESVFTLVDQTPEADAGTRALPEPVRGKVEFRAVSHRFPDADRDTVS
AVSFLVEPGQTVALVGRSGSGKTTLVNMLPRFVLPDGGDILFDDVPIQDLTLRSLRSHLSLVSQDVVLFDDTIAANVGYG
AGGTVDDARVRDALAAANLLEFVDGLPLGIHTPVGQNAARLSGGQRQRLAIARALIKNAPVLILDEATSALDNESERQVQ
ASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEHGPHSELLAANGLYASLYNMQFRED
>SEQF1086_CAE42595.1 heptosyltransferase II [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTISCIYVRLPNWIGDVCMSLPSLRTLQDSGAPLVVCARPWARDLLAGVPKQDFLPMTGKVLRDRATVAAHRRALGGGA
ATRGLLLPDSLSSAAVFRLAGIPCAGYRDDGRSPLLRWPVDKPGASLHAVQSWHYLTRAALQRWGLPAGPVEPGALLDLP
LTQAHRDAAGQLLQAQQLAGRPFVLIAPTATGLHKGKVKVWPGFDALTRALQERGQTVVMCPPPAEVAEARRNAPSATLL
PPLGLGAFAALAQRAALVVCNDSGVSHVAAAVDARQLTLFGVTRPGRTGPWSPRAVCLGSETRWPGPEQVMEKSLELLSG
A
>SEQF1086_CAE42596.1 conserved hypothetical membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAISSFLTNLIIPLNLCLTLVVLGLVLGLFRLRKTGAALIAGGLLWALAWSLPATSLWLGGALESRYPHLPPDQSPTADA
IVVLGGNTANGRANWFLPYDKETAVVRVDTATELFQAGRASKVVLSGGALEGDISEARGMAYRMRQHGVPESALILENAS
RTTYENAALTEDTLRQHGIQKVLLVTSALHMPRAMAAFSKQGVQAIAAPAPPQIVAPADGSLSPWLPDQRSFDASRSIIK
EYAGLFVYWLRGWV
>SEQF1086_CAE42597.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSATLSCRPGCGACCIAPSISSPIPGMPQGKPAGSRCVQLDDDMRCRIFGHPDRPDVCSSLQPSTELCADDREQAMTWLL
KLEELTLPAR
>SEQF1086_CAE42598.1 putative transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRIALLVDRFGNRFGGAEAYGVELMRILARRHDVTVVAREYDSDLALPFLPVRVSCRLPSWLRVLYFAWRAARLTRAGFD
IVHSHMNGGAGDVQVMHVTPVRYNWLCRPGLRRRLTAWTSPRVATYLALEKARVAQRPGKRVVAVSELIVEQMRDAYGVG
LPMETIPPGVQLPAPSDPARRAATRAALGWGEDDLVCLLVARNPLRKGLPALLAALAHLPARYRLLVVGADGPARQCVGD
SGLADGRVRLVDPTPGVAPYYEAADIYVHPTLNDSYGMAPLEAMSHGLPVVVSSADYCGFAQYLADGRDALILRDPRDGA
EVARAVAAIGDGAPLRAALSAAGLALARAQSWEAVAARYETLYETLLRERAVG
>SEQF1086_CAE42599.1 putative polysaccharide deacetylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPIPILMYHQIGEPAPRGTPYRGLTVHPASFRRQMTWLRRFGYRGLSMRDLMPYVRGERSGKVFGITFDDGYRNVHRNAM
PVLGELGFTATNYFVAHQLDGGNVWDLEKGIPFSALMNAQEMREWHQAGNEVGSHTLDHVHLPRMAADEARRQICQSKDE
LEQVLGAPVTAFCYPYGDHTDEHRAMAREAGYDNATLTVRGLASAADDPYGLPRVTVSRSTHLLRFLQKTLTGYEDRRRR
G
>SEQF1086_CAE42600.1 putative outer membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPDRAPRAPRPCPPSCLRIAMTRFLQAWVPLLVAGIAPIWIQARLHGDSFSPRVYLLGVTLMLACALLWRRAWTRPAAVL
LCTVLAANLGLAQFCYQAYGQRFNFGFAYSILTTNYDETVQLLTQHWRSAALTLAVLALLLWVVRRAAHELPTRWLALGA
AATALVFFGSWLRYELAMRGAADEYYPSIERTVSRSPMFNMRYFIQASYDQSLLDTAGRHRVTHALTRRDTGIDTYVVVV
GESARRANWGLYGYARDTTPRAAAERDRMTLYTQAAAPAPLTIMAVPLTLSAATVDSYDPRLFGDNVVALAGDAGFRTYW
LSNQARLGRYDTSVTAMANMAHFKTWADAPYDEALLPLLDAALAEPGRKVVFLHINGNHDNYCTRYPETATVYQGGAPYE
DCYDNSIRYVDALLGAVMDRLRERRASLLFYPDHGLERHESVLGTFYHGGVRPSREAFDIPMFIWNSPAAPAPARREYDA
PYSTEDNYGLILDWLGVATGVDDCKHRPAAPACAGRPVRVIDAKRDVYAYADLAPHPDGRRPATPPRVGPRDQALNVR
>SEQF1086_CAE42601.1 putative transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKILYTNFHGRNGGGHVTYVINLARALAPGHALTVAVPGTSRLYRYAREIPGVEVVDMQYTTRLSSWFHDRAALRRLIAE
GGYDIIHCNGSADHKQVMLATLGLRRRPRIVFTKHNDHPLGSLGNRLRATLATDHSIAVSAYVHGLLADSPYSRHPITTV
RHGIDTDYYAPPDAATAAQWRERYFGPDWRGRLLLGSAGGTDYDKGWLDLVAAAGSLPAPLRERVRILVAGDPPNQAKLD
RVREHGMQDQMVFPGLLDDVREALGACDAGYVLSYREALSFACREMMALGRPVLASNAGGLPENITAGRDGWVVPVHDVP
AIAAVLREMLEQPERLAEMGRQARATAEREFGLRDFAQATLAVYQRTLSA
>SEQF1086_CAE42602.1 putative transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLSVIIITKNEAANILACLESVAFADEFIVVDSGSTDNTVELARDFGARVEVTPDWPGFGPQKNRALDLATGDWVLSID
ADERVTPELASEIQAAMAGATADCYEIARLSDFCGRFIRHSGWWPDYVLRLFRRGSARFTDAAVHERVVPAQGQPARLRG
HFLHYPYNNFDALIAKVNRYSSDAAAMMHARGKRATVFSALGHGFWTFVRIYLIRRGFLDGRHGLVLAVTAAAGSFFRYA
KLMFLSEPRK
>SEQF1086_CAE42603.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRNAPNVPVLMYHHVTPAGGMIAATPEVFERQIAALARAGYRSLGTAEFAAYLDGAPVPEKSVLITFDDGYLNNWVYAHP
ILQRHGMKAVLFLITGLLGDGPARPCAGQDGPLPPAPDHDESKRLIAAGRADEVMLRWSEVQAMLAAGTFEVHSHTHTHT
RWDKQCGPDVAAKRAHIVQELADSRRALQARLGEVSDHLCWPQGYFDADYVQAARDAGFRHLYTTDALGQNVPGGDPAHI
YRFAVRNRAGGWLNRRIWLARHPWIGPRYHAWKAWKKKLRRRA
>SEQF1086_CAE42604.1 putative transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRPLRIVHSEAATSFGGQEGRIFKEMTAMRERGHHMEAICQPQAQLARRLAEASFTVHTLEMDGPRNYLRGVLSLRRLLR
QGRYDVLNTHSRRDTVIAAAAGRLAGTPLIVRTRHLSNRVGSLWSYTGLPHRVTTVSDHVRQHLIERGVPAGHIATVYSP
IVLPPPIEHSTLRGELGLAADDIVVGCVAVMRATKGHRELIDAMRPLMAERANLHLVFVGGGSPMFEQTQAYVAELGLQA
RIHLMGTRNDVPNLLAGFDLFALATRQEASGTVYVEAEACGLPVVGTDVGGVSEMMRDGETGILVPVDDPAALGAALRRL
IDDRALRRRMGEAGRRMVRDEKVFAPERLAERTEAIYRQWLAERGHA
>SEQF1086_CAE42605.1 DNA polymerase III alpha subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSEAVTNPPPFVHLRVHSEFSVSDGIVRISDLIKRVAKLGQPAVALTDLSNIFGLIKFYKGARGAGVKPVAGSDVWLTND
DDREKPFRLLLLVRNHQGYLNLCELLTRSFLENQYKGRAEVRREWLQGQEGLIVLSGARGGDVGQALEAGNAVTALSLAR
QWGQLFPGSYYIELQRAGFDGDETYTQAAMRLAAEAGLPVVATHPVQFLDRDEFQAHEARVCIAEGEILANPRRVRRYTQ
DQYLLSSEEMARRFADVPSALANTVEIARRCNLTLVLGKPRLPNFPTPDGVTLDDYLVQLSEEGLEKRLQFLFPDEAERN
AKRDQYYERLRWECKTIIQMGFPGYFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPE
RVSMPDFDIDFCQDNRERVIDYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMPYLFCDALSKLIPFNPADPWTLER
TLKDEPAFKDRYEQEEEVRALVDLARPLEGLTRSIGMHAGGVLIAPGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLV
KFDFLGLRNLTILDWAVRFVRQFNADKRDFDVMALSLDDQAAYKVLCDANTTAVFQLESRGMKELLKKLRPSTFEDIIAM
LALYRPGPLESGMVDDFVNRKHGRAAVDYFHPDLEGTLRSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEE
MAKHRELFEQGAREKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKAYHPTEFLAATLSSDMDDTDKVQI
FVRDAQDNGVEVLPPDVNASGYRFEPVADKHTEQGKPPRTMRYGLGAVKGTGQGAVEEILRARQEGGPFANLFDFCRRVS
KHAVNRRTIEALIKAGAFDTIEPNRAAMLVSVGTAMEAAEQAARSANQSSLFGDDSGDVVAGELTKVAPWNLHTTLTEEK
TALGYYFSGHLFDAWRDEVRRIVPMQLARLEPQRDLQWMCGVLAGVRTMMTRRGKMVFAVLDDGTAQIEISVFNELYEKH
RGRLREDQLLVVQGKVSNDEYSGGMRIVAEQLYDLQLAREARAKSLRIRLNGQADAARLRQLLNPFRAEPENGVPGVPVD
VVYRRNNFLCTVRLGEDWRVRMADTLLENLNDWAKPDGVEVTY
>SEQF1086_CAE42606.1 putative dioxygenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPQRRPLRTMKWLIPGLWLASILFAHFRGRVRLSLSRQMLDHSVLLAPVNAFMVLTSRVPTTPYLTTSEIPELKVLDDNW
ETIRDEALKMAELRRIKAAERHDDIGFNSFFKYGWKRFYLKWYDARHPSAEELCPKTVAILKSLPKVKAAMFAELPPGGK
LNPHRDPFSGSLRYHLGLATPNDDRCYIAVDGESYSWRDGESVVFDETYVHEAHNKSEGNRIILFCDVERPLKWRWAEAF
NRWFGRVVMSAASSPNDAGDQTGAINKLTHAHWVIDQKRKQFKAWNRTVYKATKWGLIALVAIGFLAL
>SEQF1086_CAE42607.1 putative ATP-dependent helicase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPEASRPPERAAAARSEPRPERPIPAISYPEDLPVSARRQEIARAIAAHQVVIVSGETGSGKTTQLPKICLELGRGRRKM
IGHTQPRRLAATSVAKRIAEELRTPMGEVVGYQVRFNDRTGPNASIKLMTDGILLAESQRDPLLRRYDTIIIDETHERSL
NIDFLLGYLKQLLPRRPDLKVIITSATIDAERFARHFAAGPERPAPVIEVSGRLYPVEVRYRPVQPPMSDEAAAAPAKGG
RERSAGDEERDLIDAIVDAVDECARHGPGDVLVFLPGEREIRESAEALRKRHPVGTEVLPLYARLSQAEQEQIFHPRGNA
RRVVLATNVAETSLTVPGIRFVVDSGLARVKRYSWRNKVEQLRIEPVSRASANQRAGRCGRIGPGLCIRLYDETDFNARA
PFTDPEVLRSSLASVILRMKSLKLDDIEQFPFVEAPPGRAVADGYHLLQELGAIELAGDGEAAEAGGGGAAFRLTRTGQE
LAKLPVDPRIGRMILAAREQQCLAEMLIIAAALSVQDPRDRPMAEREAAESAHAKFADDKSEFLSFLKLWRWYGEQVQHK
ASQRKLVALLRQNFLSPVRLREWHDVHTQLAALVGEQGWRLNQSEATYEQLHMALLSGLLGNIGFKGEEGGQYHGAREIR
FHIHPGSRLVKKAGRWIVAAELVETTRLYARCVARIEPVWLERAAAHLLRRNWSDPRWEKKAGQVVANERATLYGLLVYN
GRRVHYGRINPQHARELFIRQTLVPGEIDTRLPFVAHNRKLIAGIEKLEHQTRRPDILVDDELIYAFYDRQLPADISQAA
SLEKWVNGLDKAAAARLLLTRDELMRHEAAGVTTDVFPKKVEWQGVAMPLDYHFEPGSPRDGVTLSVPLFALNQLDAQRC
EWLVPGMLKEKAHLLLKSLPQKLRRHCVPLPDYAAGFYERWYERQADPQQGLVDALIADMWDQVQVRPAPGDFKLETLPA
HLFMNFKVVDEHGRMLAAGRNLAQLKAELGKQAQATFQQLAARDSDVAQALAHENLTSWSFGPLPEIMEIKRGGQSVIGY
PALVDRGAHCDLDVFDDPDEARRHHRAGLLRLFRLALREQVKFLEKNLADLTKMSMLYMALGTQEELRDQIIDCALAQAC
LAEPWPVNEQQFEARRQEGKGRLGLLAQEVARMAHAILAEYGALQRKLPQARPHAAAYADLQQQLGVLMPKWFVRDTPYA
QLAHYPRYLKAAVARIDKLRADPARDARLMGEMAPILTQYQRARSALKGAPDPRLDEFRWLLEELRVALFAQELRTPMPV
SVKRLMKAWESLRR
>SEQF1086_CAE42608.1 amino-acid acetyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQDRCPHQDHRSIPTIMPDLEPDTVSALEAPEFAPAQFVRWFREVAPYVHAFRGKTFVVAFGGELVQAGALNILVQDLSL
LSALGIHLVLVHGSRPQVNEQLRLKGYTQQFGRGLAPTDPAALECAKEAAGEIRLDIEAAFSQGLPNTPMSHSHIRVLSG
NFVTARPTGVVDGIDYKHTGQVRKIDVDALKFAIEQGSVVLLSPLGFSPTGDAFNLAMEDLATSVAVALRAEKLIFLSGE
PGVLDGNGAVDTELARVDADALLARGKLDEDTTYFLQHASLAVKRGVARAHLVPYALDGSVLLEIFTHDGVGTMVVEDTL
DDLRAATLDDVGAILSLIEPLEADGTLVPRPRSAIERDVERFTVLEHDGVIYGCAALYPFPEDQMAEMACLIVHPEWQGS
GEGEILLRHMESRARASGARRLFVLTTRTSHWFMKRGFVRGGVADLPRDKQNNYNRSRNSLVFIKKL
>SEQF1086_CAE42609.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRIVNCVKLKREAEGLDFPPYPGELGTRIWQQISKEAWEEWKQIQTRLVNENRLNLADARARKYLQQQMERFLFEDGTV
EAQGYVPPSA
>SEQF1086_CAE42610.1 putative phospholipase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPAATDPDIAALVARAAAVAPERRSGTLRDLDHIVILMQENRGFDHYYGALPGARGRADPHRAPTPDGDVFVQAHAGQRL
APYPLAPALPPGQPLGHLTPHTWDDAQRAWNDGRMDQWLAAKGRLGMGYYRPEELPLQTALARAFTLCEAYHCSMHAGTN
PNRLFLWTGTNDPHGQAGGPALVNTHDRPGPAHEGYAWTTYPERLQAAGVDWAIYQDMADNYHDNPLAGFRQYRAELAGG
AARAPLRERALSTRTLAALAEDAANGRLPQVAWIIAPAADSEHPEVSSPAQGAAFSARVLDILTRAPALWRRCALLLTYD
ENDCFFDHMPPPAPPGAAGGGSTADTAGEYHQARGGPSAGTPDDPRALHGRAYGLGPRVPMLVVSPFSRGGWLDARVYDH
TSVIRLLESRFGVAEPNISPWRRAVCGDLSHAFDFTGAQDQAGAPGPRSRPSPYACHVEAWAADGRQRVRMANPGHATLV
LHVYDCLRLAQGPRRYTIEPGRQWEDSWPDAGADLACDLWILGPDGFHRHIRRHGAAAPLAAAWRDQPPALLLENRGAQA
LQARIESAYGEAPALLRLAPGEQAAWPYEPASRGWYDLTASAAGQSLRLAGRMRAAGPGRPDPRLG
>SEQF1086_CAE42611.1 putative transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRPTTQGVRMTEHTNKQFDADLQHVRSQFLQMGGIVEAMIHEAVEAIPAGDMSMVEKVREREKEVNRHEVEIDERISLIL
ARHQPTAIDLRTLLAVSKMLTDMERSGDEAEKIATAVRRMYENDQRHIPLIELRHMAVNVGNMLRQALDAFARLDPILAA
QVVRSDKEVDKEWKAALRNLITYMMEDPRTISRAIDMIFIARALERIGDHAKNMAERVIYMVKGADVRHTGVKNTERLAR
GEEAIEKADKAEKAGNAETPAPTPEVPQ
>SEQF1086_CAE42612.1 ribose 5-phosphate isomerase a [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLTQQELKQQAADAALELVEQVAGPDVIIGVGTGSTADLFIDGLACFKGRLRGTVASSERSAARLAGHGLAVLDLNDVQS
MPIYVDGADEIDPNLHMIKGGGGALTREKIVASVARRYICIADESKLVERLGRFPLPVEVIPMARNAVARGLSRLGGQPA
LREGFVTDNGNIILDVAGLSIADAPGLEKTINDIPGVVTCGLFALAGADVALLATQDGIRRLERRG
>SEQF1086_CAE42613.1 putative acyl-CoA dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQPFLTHQVTNQVAPLEDYSLYETDPVLQQAVRREGAAAFESELREHGAWLGRAQTLEAAAEANRNSPRLLAYDPTGHRQ
DKVAFHPAWNALMTGIVARGLHSRAWAQPVPGAHVARAAAYLMQGQVEAGTLCSTTMTHAAVPLLAREPAGVIDYGRDWL
DVLYSREFDASDAPIGRKRGALIGMGLTEKQGGSDLRSVATRAEPVGAPGRGQAYLLTGHKWFLSVPHADAHLVLARTDE
GLGCFFVPRWVPDGPRNAVRLRRLKDKLGNRSNASAEVEFEQAWGAMLGEPGRGTAVLLEMAATTRLDCVLGSAALLRQA
VAQALHHAAQRQAFGTALLAQPLMRVLLADLALENEAATVLALRLARAVDERADPVARALVRVGTPAAKLWVCKRAIAAL
GECMEVLGGNGYVEEAPLARLYREAPVNSIWEDSGNVMALDVLRGLAREAEALPGLRDELDRARGVVPAYDQALDDWLAL
VAQPDSVPQALARRVAAGLATLWQAALLIRHAPTPVGAAFAATRLHAPAGIVGAAPIDDPAPILARAWPGIC
>SEQF1086_CAE42614.1 conserved hypothetical lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEIGLESYLPWITVAAAVFALLACLLALRGRGGDARLQALLDGLERVDRGLRADLAESQRGLRAELAESMRALRAEMAQS
QEELRATLGRDARAARAEHGESLARFASQFGERLQGLVELNDRRMQDVRQVVDQRLQALQADNGARLEEMRRTVDEKLHA
TLEQRLGESFRMVSDRLEAVHKGLGEMQTLAAGVGDLKRVLTNVKSRGTWGEVQLARLMEDAMTPEQYARNVKPVPGSDA
VVEFAIRLPGKDEGGGPVWLPIDAKFPKEEYERLMDAQDAAEQEAARAAGAALAKAVETQARLIASKYVAPPHTTDFAIM
FLPTEGLYAEVLRRPGLLDKLHGLRVNVAGPANLAALLNSLQMGFRTLAIERRSSEVWQVLRAVKTEFAKFGESLATVKK
TLDTASNRIGQTEVRTRAMLRNLRTVEALPEAEAARLLGDEPDTLGADQGSPS
>SEQF1086_CAE42615.1 hypothetical protein BP2342 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPGSGYAAMFGPLDLSQARLLAQGGDRYVFQHPHEPALLVKVMDMEARAVYLEARPFKRWYKQFQRESAYRVYLNEITEY
VTTSTSASGVWQVPLARIVGLAQTSLGLGLLAEKITDAAGNMAPTVSDLVKRGEFDTALAQRLDRFFEDLADAHIVIHDI
SASNIACGRNAEGREGLYLIDGFGVLPLIPTYAWSRRLNRKRIMRKYAELRARMPAPAP
>SEQF1086_CAE42616.1 putative methypurine-DNA glycosylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPAPARTARPQPGPALPAAFFNRDAQQLARDLLGKVVRHRVDGLWLSARIIETEAYYLAEKGSHASLGYTHKRRALFMDG
GVVYMYYARGGDSLNFSAAGPGNAVLIKSGHPWVDEVSGPRALACMQRLNPDAQGQPRPPARLCAGQTLLCRALGLKVPQ
WDAKAFDPRRFFVEDVGVRLDRLVRTTRLGIPAGRDEHLPYRYVDPAYAAFCTRNPLRHGQQAGRDFDWVDPDGALYV
>SEQF1086_CAE42617.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKQVTLYGLNKCSTCVKARDWLAARGVAHDFVDYRDHPVPAATLKQWAGKVGGWEKLVNRTSMTWRALSDERKAARSDAE
WTALIAEYPALVRRPVTVTPDGEVTVGFSEKRYGERFA
>SEQF1086_CAE42618.1 putative inner membrane permease polyamine transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKGPNKSLRMLVLGLGYFFLYVPIISLMVFSFNDSPVVTSWTGFSLRWYGSLLEDSALLRAAWLSFKIAVLTATAATIIG
TWAGYVLGRMGRFRGFTLYVGMLSAPLVIPEVVLGISLLLMFVEMRGHLGWPEQNGVFTIWVGHVTLCMAFVAVVVQSRI
RDMDRSLEEAALDLGATPIKVFFAITLPLIAPALVSAWLLAFTLSLDDVVIASFLSGPGSSTLPMEVFSRVRLGLKPEIN
ALATLFILAVGTCVIIANRLQWRKEADNR
>SEQF1086_CAE42619.1 putative inner membrane permease polyamine transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRFALPRPSRRTVAIVPPFAWLVLFLLVPFLLVFKISFAELQFGIPPYTPLAEFKDEAVQLSLHLRGYVLLFTDSLYVA
TYLNSVKMAAITTLCCILIGYPIAYYIARSAPALRNLLLLAVILPFWTSLLLRVYAWVGILRNDGLLNKLLMSLGLISSP
LEIYRTDLAVYIGLVYAYLPFFILPLYANLVKMDLRLLEAAYDLGARPWQAFWRITVPLSRPGVIAGAMLVFIPSVGEYV
IPEMLGGADTLMMGRVMWNEFFNNTDWPMASAVTCVMVLLLLVPLALFQYNQIKQQDFAGGGRR
>SEQF1086_CAE42620.1 putative polyamine transport ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDIRYSAQHSADPDEFVKVSDVVKIFGDVVAVQSVNLSVRRNEIFALLGSSGSGKSTLLRMLAGFEDATSGQILLDGED
ITNVPPYRRPVNMMFQSYALFPHMTVEANVAFGLKQEGVDRAEIHDRVFEALDLVQMAGYARRKPHQLSGGQQQRVALAR
SLVKRPKLLLLDEPMSALDKQIRQKTQIELVKILQQVGVTCIMVTHDQEEAMTMAHRLAVMTEGQIVQCGTPQDVYEFPN
SRFVAGFIGSTNLFSGTIVVDEPDHVAIESGELTRPLYVSHGVSEPLGMEVHVSIRPERLVVLREQPEAEHNWAHGMVTH
MAWMGSYGLYQIRLDSGKIVEASVPSLQLARQDAPGIDEEVFVSWDADSATVFSS
>SEQF1086_CAE42621.1 putative polyamine transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKFSARLRCVLGGAVLAVAMSPAVAQDKVVNVYNWAEYTAPDTIPGFEKETGIKVRYDVYDNNDTLQAKLLTGKSGYDVV
VPSTHYASRQIEGGLYQKLDKSKIPNWKNLDPDVMALVATIDPGNQYVIPWGYGTNGLGYNVTKVRQIMGEGVDLANWDM
LFKPENAAKLKECGISMLDEAAQVFPAVLKYLGKDPNSANTDDYKEALALLKQIRPYIRQFSSSGYIDELAVGDLCMVYG
FSGDVMIARRRAQEARKPYEINYFIPKGGAPAWFDVMAIPKDAPHPEEAHAFINYIETPQVHAAITNTMFYPNANKAARE
FVVKDVADNPMIYPPADMSKTLYVIKAQPLNVQRLQTRMWAELKSGR
>SEQF1086_CAE42622.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPADTRARTERLAWREAPAGAMLYDAARIEAPGPALFDPSSYGAAAQPVAAGGRQAAWFVATPGWQGVLRGYRCGGLAAR
VSRDAYVWQGEARTRGLREYRLLAHMREQGLAVPAPLAAGYWRYGLTYRAAILVERIPAARPLASLLDEPAWEAVARAIA
AMHRAGVWHADLNAFNILLDPGGLAWLIDFDRGTAGGVSERGRQGNLARLRRSLVKVGGERGQDFWQRLEPAYRAAWARG
TARA
>SEQF1086_CAE42623.1 globin-like protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTTRVQPISEPLDTSKTVFDMLGGEPGVRELVDRFYDLMDMESDFKALRDAHGPSLEQARDKLFWFLCGYFGGPDHYIE
RFGHPRLRARHLPFSIGEIERDQWVACMGRAMQDQQLPAALVDRLLQAFYGTADWMRNRAG
>SEQF1086_CAE42624.1 putative inner membrane transport permease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMDFPDARSPARQGWLPTLRLGLRMMMRDARAGELRLLVLVLVLALVVAVAAVTSVGFLADRVGRALERDAGQMLGADLV
LEADEPVPAEFAQRARQAGLSVSSTLQFPSMASANGNAQLASLKAVEPGYPLRGSLRVAEAPFAQDAPTRDVPALGAVWV
DAQLLTLLGVQVGDTLGLGDARLRIERVITYEPDRGMQFVNVAPRVMLRTADLPATGLVAPGSRIGYALLAAGQPDAVAA
YGQWLGQHLQRGQKLATLESGRPEVRRTLDRAQRFLALVALLAVLISAVAVALAAGRFMQRHRDGIAVMRCLGAVQAQVT
RMLVLEFALVGLAASAVGCLLGYAVHQGLVLALGQLIDTSLPAPSAIPAAQGVLTGLLMLLGFALPSLAQLRHVPPARVL
RRDADRLRARGAGGYALGAVGLGLLIWWFAGDARLGAVVAGGFLGAFAVFALVAWLAVQALARLRRAAAGLPALRFALAG
VVRRRAATITQVCALAIGLMALLLLTMTRTDLIAGWQRTLPPDAPNRFLINVQPDQRDAVMQRLADAGLGQVHLWPMVRG
RLVSVNGRPVGPDDFDEPRAKRLVDREFNLSYGDTLPESNRVEQGRWLRPDAAEVSLESGLARSLKLAVGDKLGFDIAGQ
QVEVVVSGTRRVDWDSMRVNFFAILSPQALADAPQSWITSFHLPPAKAAVLRDLVQAFPNLTVFDVGAILGQLQTVLDEV
VKAVQLLFLFTLAAGVLVLAAALTATRDERVREAAVLRALGATRRQLARAQRLELLAVGGLAGLLAAGGATAVAWVLSTQ
VFDFAISLQWWPWLAGALAGMLGAWAGGALALRGVLRTPPLVTLREA
>SEQF1086_CAE42625.1 putative periplasmic substrate-binding transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRKSWLAAATLAACTVAASLPAAAQTTLKMAYALSTSSHYGAGAEAFAKSIEGASGGKYKVQQFANSALGGEREVIEGLQ
IGTIDLAIVSTGATLNFVPETGVFDIPFLLRDLPHARAVLDSKIGQDMLAKFPDRGIIALAWGEQGFRHLTNNVRPVKTP
ADAKGLKIRTTENPIHITAFRQIGILPTPMAWPEVATALQQGIIDGQENPLSVITSAKLSQLQKYLSLTGHVYGPALVLM
SANVYNGLSDAEKASFKAAGKDSAQAMRAYVDNIEQTGVEQLKKEGMEVSEVDRAAFAAAVEPAYAEYYKKFDKQLIQSI
RDTK
>SEQF1086_CAE42626.1 putative inner membrane transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRLLCTAERALFRLVSAIAQILLIAAACAAFYQVIARFILHSPADWSEVATRAQLIWTVLLGVALAFRHGAMISVELLRN
TLQGAARRLLEHAIALTCIAFLAFIAWIGGQMTWRVRFQNVPSLDISISWIYLAIPVGATLTVIAVLARWLAGEQDDVPV
RNDAQG
>SEQF1086_CAE42627.1 putative inner membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQLMILSMLIFFGLSVPVAVAIGIAALTGVSVGGLPWLVVAQQIYAALDKYPLVAIPFFILAGNLMEAGGISERMVEFA
KSLVGGIQGGLACTCVLTCMIFAAVAGSSVATTFAVGAILIPAMVRHGYPAPFAASLQASAAELGVIIPPSIPMILFAVS
TDTSTGELFIAGVMPGVLIGLALMLYVWLYARRNGLGKQDGAGRLPVWQAFKRAWLALLMPVIILGGIYGGVFTPTEASV
VAVMYAVLIGWLVYRRLSFGLISTTLHRSVISTAVIMFVIANAGVFSFLLNRAGIPDALGVWLSQLFDNHFTFLMGVNAA
LFVIGMFIETSASVVVLAPLLLPVAMKFGVEPVHFGVIMVVNLALGMITPPFGVNLFAACAVAKLPLERLVRPLVPFVGV
VVACLLVITYWPGLSLGLRDLVYGR
>SEQF1086_CAE42628.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWQRPHQGIGRAVPISRLNLDEYNLLTVHI
>SEQF1086_CAE42630.1 citrate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNLSDKKATLSFSDGSAPIEFPVYKGTVGPDVIDIRKLYGQTGMFTFDPGFMSTAACASGITYIDGDKGELLYRGYPIEQ
LAVNCDFLDICYLILNGELPNGGQKQDFDSQVTHHTMVNEQLHFFLRGFRRDAHPMAVLTGLVGALSAFYHDSTDITNPH
HRHVSAIRLIAKMPTLVAMAYKYSQGQPFIYPQNDLSYTGNFLRMMCATPCEEYKVNDVVERALDRIFILHADHEQNAST
STVRLCGSSGTNPFAAIAAGVACLWGPAHGGANEACLQMLEELQANGGVAKVGEFMEKVKDKNSGVRLMGFGHRVYKNYD
PRAKLMQETCKEVLVALGLENDPLFKLAMELERIALEDDYFVQRKLYPNVDFYSGIVQRAIGIPTSLFTAIFALARTVGW
IAQWNEMLSDPDYKIGRPRQLFTGSVTRDVPGMDKR
>SEQF1086_CAE42631.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRLTELQRARLRWRARRGLLENDLIITRYLDACEDQLTDEDVTALTQLFELGDNDLLDLLLARKEPEGALDTPRLRAII
DRMREL
>SEQF1086_CAE42632.1 succinate dehydrogenase iron-sulfur protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTKRIVKFEIYRYDPDKDERPYMQKLEVELQPTDKMLLDALVRIKNDVDDSLALRRSCREGVCGSDAMNINGKNGLACT
TNLLELKEPIVLKPLPGLPVIRDLIVDMTHFFNQYHSIRPYLINDTPPPEKERLQSPEAREELDGLYECILCACCSTSCP
SFWWNPDKFVGPAGLLQAYRFIADSRDEATGARLDNLEDPYRLFRCHTIMNCVDVCPKGLNPTKAIGKIKELMVRRTV
>SEQF1086_CAE42633.1 succinate dehydrogenase flavoprotein subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVAVMNSLPRRQFDVVVVGAGGAGMRCSLQLAQAGLSVAVLSKVFPTRSHTVAAQGGVSASLGNMSEDNWYWHMYDTVKG
SDWLGDQDAIEFMCREAPNAVYELEHFGMPFDRNADGTIYQRPFGGHTANFGEKPVQRACAAADRTGHALLHTLYQRNVA
ARTQFFVEWMALDLLRNEAGDVLGVTALEMETGEIYVLEAKTTVLATGGAGRIWAASTNAFINTGDGLGMAARAGIPLQD
MEFWQFHPTGVAGAGVLITEGVRGEGGILLNKDGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRGCGPDGSYVVLKLD
HLGADVINKRLPSIREIAIKFGNVDPIKEPIPVVPTIHYQMGGIPANYHGQVLERANGENKIVNGLYAIGECAAVSVHGA
NRLGTNSLLDLIVFGRATGNHIVDSHPERQHAHQPLPKEAVDRSLARVDELESRTSGEKTQDVANAIRMSMQRHCGVFRT
LELLNEGVGQIEDLAQTAQHIYFKDKSKVFNTARVEALELANMTEVARATIKSAANRTESRGAHALNDHPERDDVNWLKH
TLWYSEGSRLDYKPVQMKPLTVESFPPKARTF
>SEQF1086_CAE42634.1 succinate dehydrogenase hydrophobic membrane anchor protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADTKNYGPKRLVVGAHYGVTDFIAQRITAVILAVYTLVLIVGLLIMPAFTYENWKALFTFHVFALPVGQILASLAFFAL
AWHAWIGVRDIWMDYVRPVGVRLLLQVLTILWLVGSVVYFAQILWRI
>SEQF1086_CAE42635.1 succinate dehydrogenase cytochrome B subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDSAAKPRPQFRNISVPQILSYRLPLAGKLSILHRISGALLFLCLPLVIVPLFAASVTSPESYAQVAQYAANPLVKLVL
LALIWGYLHHFCAGIRYLVLDLHIGLDKVSAQKSAGVAFGVSLALTLVFGLKLFGVL
>SEQF1086_CAE42636.1 putative GntR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAGRIPNTHDSDMAEARPDSLTRSRAAKPAGEGAAFSPLYRQIKELLVQSLDRGEWKPGELIPSEIDLAARFQVSQGTV
RKAVDELAAEHLLLRRQGKGTFVATHHEARVRYRFLRLAPDEEGEGGRAESRILECRRLRAPAEIARALELRAGETVVTI
RRQLSMNHMPTVIDDLWLPGTHFRGLTLELLTASKAPLYGLFESEFGVSMVRADEKLRAVAASPEIAPLLGVEPGRPLLQ
VDRISYTYGDRPMEVRRGLYLTDHYHYRNSLN
>SEQF1086_CAE42637.1 malate dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKPALRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELEDCAFPLLHEVTAHSDPRTA
FKDADVALLVGARPRGPGMERKDLLSVNAQIFTAQGRALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLR
LDHNRALSQLSAKSGKRVADIEKLIVWGNHSPTMYPDFRFATVGGQGLTQLINDDAWNRDTFIPTVGKRGAAIIEARGLS
SAASAANAAIDHVRDWVLGSNGKWVTMGIPSDGSYGIPEGIIYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEE
RDGVKDLLK
>SEQF1086_CAE42639.1 2-methylcitrate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTSQKKPTVQQKKPAAQPAEKAAFKPKKSVALSGVVAGNTALCTVGRTGNDLHYRGYDILDFAGSAEFEEIAHLLVHGK
LPNKAELKAYKEKLRALRGLPAQLQNVLECLPASSHPMDVMRTAVSVLGCVLPEKDDHNTPGARDIADRLMANLGSALLY
WYHYSHNGRIIDVQTDDDSIGGHFLHLLHGAKPSDEWVRAMHTSLILYAEHEFNASTFTGRVIAGTGSDMYSSITGAIGA
LRGPKHGGANEVAFEVQKRYETPDEAEADIRQRVENKEVIIGFGHPVYTVSDPRNKVIKDVAKKLSRKAGSTKMFDIAER
LETVMWDIKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTAGWSAHIIEQRIDNKIIRPTANYVGPEDQTYVPISKRA
>SEQF1086_CAE42640.1 aconitate hydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPRRVRHAGPARPARPPQPRFPACLHAHRDTPVMNTKYRKNLPGTSLDYFDARQAVEDLQAGAWATLPYTSRVLAENLVR
RCDPATLSDSLRQLIERRRDMDFPWYPARVVCHDILGQTALVDLAGLRDAIADAGGDPAQINPVVPTQLIVDHSLAVEYP
GFDKDAFEKNRAVEDRRNEDRFHFINWTKLAFRNVDVIPPGNGIMHQINLEKMSPVVQVRDGMAFPDTCVGTDSHTPHVD
ALGVIAIGVGGLEAENVMLGRASWMRLPDIVGVELTGRPQAGITCTDIVLALTEFLRREKVVGAYLEFLGEGASALTIGD
RATISNMTPEFGATAAMFYIDGQTTDYLTLTGREDSQVKLVETYARQAGLWADDLAGAQYERMLRFDLSSVVRNMAGPSN
PHKRVATTELAERGIAGPWQETPGQMPDGAVIIAAITSCTNTSNPRNVIAAALLARNANRAGLTRKPWVKSSLAPGSKAV
QLYLEEAGLLPDLEKLGFGIVAFACTTCNGMSGALDPKIQQEIIERDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVI
AYAIAGTVRFDIEKDALGVDAAGKPVTLKDIWPSDAEIDAVVTASVKPEQFRKVYEPMFRFAQEQTGKIDPLYAWRPQST
YIRRPPYWEGALAGERTLEGMRPLAVLGDNITTDHLSPSNAIMADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATF
ANPKLINEMAVVDGQVKQGSLARLEPEGKVMRMWETIETYMDRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEG
FERIHRTNLIGMGVLPLEFQAGVDRKTLGIDGTETFDVVGERVPRATLTLVIHRRDGEQVQVPVICRLDTAEEVSIYEAG
GVLQRFAQDFLESTQTA
>SEQF1086_CAE42641.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAFLPQLKVRATYMRGGTSKGVFFRLQDLPPAAQVPGPARDALLLRVIGSPDPYGKQIDGMGCATSSTSKTVILDRSQRP
GHDVDYLFGQVSIDSAFVDWSGNCGNLSAAVGAFAIESGLVDPDRVPRNGTAVVRIWQANIGKTILGHIPIVDGQVQESG
DFELDGVTFPAAEVQLEFLDPADEGEGEGGAMFPTGNVVDTLEVPGIGTLQATLINAGIPTIFVDAQAVGYTGSELQDDI
NGDAKALAMFETLRAHGALRMGLIADVAEAAKRQHTPKVAFVAPPAAYTASSGKQVGAGDIDLRVRALSMGKLHHAMMGT
AAVAIGTAAAVPGTLVNLAAGGGERESVRFGHPSGTLRVGAQARLEDGQWKVTKAVMSRSARVLMEGHIRVPAETL
>SEQF1086_CAE42642.1 2-methylcitrate dehydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSHATIPFNQRPAWDSALADIVDYVLDYEVQGKLAYETARNCLIDTLGCGMEALEYPACRKLLGPVVPGTVVPHGAKVPG
TQFQLDPVQAAFNIGAMIRWLDFNDTWLAAEWGHPSDNLGGILATADWLSRSAVANGRPPLAMRDVLTAMIKAHEIQGCI
ALENSFNKVGLDHVVLVKVASTAVVAHLLGLSREEILNAVSLAWVDGQSLRTYRHAPNTGSRKSWAAGDATSRAVRLALI
ARTGEMGYPSALTAPTWGFYDVLFKGQPFRFQRPYGSYVMENVLFKISFPAEFHAQTAVECAMEIHALLKARGKSADDIR
RITIRTHEACIRIIDKQGPLNNPADRDHCIQYMVAVPILYGRLTAADYEDDIARDPRIDALRARIVCVEDPAFTTDYHDP
TKRSIANALTVEFNDGSRLDEIVCEYPIGHRRRRADGIPLLEAKFRTNLARAFPARQQERILAASLDQEKLEAMPVNEYV
DLYVI
>SEQF1086_CAE42643.1 putative conserved inner membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLWVKTFHIVFIAAWFAGLFYLPRIYVNLAQQSDPAIQSCLLGMARRLYRFTTLLAIPAIVLGLWLYVGYRIGTGPGNAW
MHAKLLFVLLIIGYHHACGVMLRKFEQGRNARTHKFYRWFNEIPVVLLLIVVTLVVVKPF
>SEQF1086_CAE42644.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPTDDKARPRKTLTIKKTAPAAPSADDEAPRRKRIGARARLVAQMERAKEQQHAPRRKAPRQDAAHQDDAPRRRPRAPRE
AEIFPVYAPCPQGIEEALAAEMQALGFEDARAGRAGCAFSTDWAGVQRANLYSRLATRILVQVAQADIGHEDDILDLARS
VPWERWFGPDETLRVDTSAIKSPVKSLQYCNLRAKDGICDRLREVEGARPDIDTVRPDARVHLFLSGTTATLYLDTSGES
LFKRGWRLDKGEAPLRENLAAGMLALAGWDPAEPLLDPFCGSGTILIEAAWIALGVPPGISRPFGFERLRNHDARRWQDL
KADARTRIQTQLETPLFGYDLDPRAIQYAQANAERAWLTADTIRFEVGDARHLAAPADHGWIVTNPPYGERMETEDDSEM
WRDWAACLKRQFAGWQVHVISSDMTLPQRLRLKPLRRVPLHNGALDCRLFGFELVPASYRKPA
>SEQF1086_CAE42645.1 hypothetical protein BP2374 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEPTAMNPNTFRLTDELERQLMLQAMEDQFRPRPMRALAAGLRKLADGIKSVAGKSGSKAAHSAA
>SEQF1086_CAE42647.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTARMEATVTEIHPTHWRTLWISDIHLGTAGCKAEFLLDFLDHNDSDTLYLVGDIVDGWQLRKHWHWPRAHNDVVQRILR
KARNGTRVVFVPGNHDEFAREFAGFAFGDIEILDEDVHVTAQGVKLLVLHGDQFDGVIQHSKWLAHLGDSLYQTALWLNH
HFNRLRHRLGLHYWSLSQYLKHKVKNAVAFITDFEEALAGEARRRGLDGVVCGHIHQPALRQVDGILYCNDGDWVESLSA
LGETHEGQLQLLDWAACMAERGNDPAAARPRRSLSLPALPSALRRQGRHP
>SEQF1086_CAE42648.1 putative AMP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPPSSDHRAMNDQYEALYQTFRWLVPTQFNIADACCHRWAASSPDARRIAIYYEDEAGNREVWTYARLAEAANQLANGLV
KMGVERGDRVGVVLGQRPETVVAHMAIYSVGAVVLPLSPLFGPEALESRLRDADARVAIVDYASSANLLAISDNCPNLHQ
IIGIGFADERVLPWRSLLARQPNEFKMVATRASDPAILMYTSGTTGAPKGALLPHSVLIGNLPGFVASQDWFPRPGDVFW
SPADWAWTGGMMDALLPTLYFGHPIVGTRGRFTPERAFELMERYQVTNTFLFPTALKMMMKSVPEPRGRYQLALRSIMSA
GESVGETVFEWCEQALGITPNEMFGQTELNYVVGNSNRRWPARPGSMGRPYPGHRVAVIDEAGRPVKPGETGEVALNRFD
IHGFPDPVLFLGYWRNEAATAAKFTDDWCRTGDLASIDADGYLWYAGRADDVFKSAGYRIGPGEIENCLLGHPAVANAAV
VPKPDAERGALVKAYVVLTPEYQGRDPDSITQVLQEHVRDRLAPYEYPKEIEYVDALPMTTTGKIQRAVLRRREAERASG
AHS
>SEQF1086_CAE42649.1 putative transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPIYQLDDLIPAIDPSAYLADSADIIGNVTLEAGVSIWSQVSIRGDNAPILVRSGTNIQEASVLHVDAGCPMTVGPNVTI
GHQAMLHGCTIHEGALVGMQAIVLNNAVIGRNCLIGAGAIIPEGRIIPDNSLVIGIGKIVRELSAEEIAEMQANNRHYVE
RGQHYKTALKRIG
>SEQF1086_CAE42650.1 putative chaperonin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDLLKKYLFEDRSVRIQAVRLHETWLQAQVNHQHPPAVTRLLGELVAASTLLAANIKFDGSLVLQIQGDGPLALLVVEC
RSDLSLRATVKVREGQSIPDNGTMQSLLNANGNGRFMVVLDPQRKVPGQQAYQGIVPLEGETVAEALGHYMKASEQLDTQ
LWLAADEQHAAGLLVQRLPDHGGTTQGDAAESWSRATHLAATLQPAELLATDTDTLIHRLYWEEPLMAFEPHAVRWFCPC
TRERVSSMLRSLGQAEVESILAEQGRVEVSCDFCGKPYEFDKVDCAGLFAPNSPMPEQDPPTVH
>SEQF1086_CAE42651.1 putative periplasmic protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEHAAAVPPPRHAGTAALEFMLAGMLLLAASIATVETMYWHQMRHLAYLALIEAARAGATSHGEPGAIARAFARAMRARH
AAGQPGQAATRQQHAWNRQQARTGLPAWRIAILQPGPTAFANHGVANRGLRRPPRIRNDYQAEQHAQRLAQGWPGGAGPR
SGLDIFQANTLRLRLVYRLAPLSPWLGALLRASAALAQACARPAWRQGLLPIRLELEMDMQSDPALWPARPDVSYGDARD
CDGLTAAASG
>SEQF1086_CAE42652.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRFPMLCLALCLATGTAAAGEGPPQPSVTPLMTQPLQDYPGKEVAVIVVDYPPGGADPVHRHNAHGFVYVLQGSIVMGV
RGGQPVTLGPGQTFHEGPDDVHTIGRNASAAEPARFLVFLLKNRGEAILTPQR
>SEQF1086_CAE42653.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQRLDYQQQSPELFKKFVAFSLALKQSSIETSIRDLVDIRASQINGCTFCLDMHVKEATMHGERPLRLHHIAAWRESTL
FSPRERAALAWTEVLTRIPAEGISDEIHAQVREQLSEQELSDLTFLVMSINAWNRVNVAFRIEPGKYDQAFGVDKSGLS
>SEQF1086_CAE42654.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKIVVIGGTGLIGSNVVNRLRRDGHETVAASPGTGVNTITGEGLAQALDGAQVVVDVANSPSFEDQAVMAFFETSGRTLL
AAEAAAGVTHHLALSVVGTDRLADSGYFRAKVAQEALIKASKVPYTILRATQFFEFIESIVNAGADGDTVRLSPALIQPI
AADDVSAALADLAVGMPLNGTVEVAGPDRLPLDELARKFLAARGDRRQVVADVHARYFGSELDDRSLVAGDNPRVGSTRL
MNWLSRSPAPQ
>SEQF1086_CAE42655.1 putative transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRLAFDDCLLDLDRRELTRASRAVATAPQVFDLLAYLLANRERVVDRDELIQAVWNGRIVSESTLASHINAVRTAVGDSG
QRQAVVRTVPRKGFRFVAEVRTDAPAPAGMARTPAPPATAPALPAKPSIAVLPFVNLSADPEQDYLADGVVEDIIAALSQ
YRWLFVVARNSSFTYKGRAVNVRQVGRELGVRYVLEGSWRKERNRVRITGQLIDAASGAHHWADRYEGVLDDIFALQDQI
TENVVGAIAPQLERAEIERARRKPTDSLDAYDYYLRGMACAHQGTRQAAEQALPLFHRAIACDPEFAPAYAMAAWCHCWR
KVNGWMQDKPREMAEGARLARRAVELDRIDAVALTRSGHALGHLAGDLQGGIALLDRALVLNPNLAAAWFLSAFLRLWHG
ETAQAVTHFTHAMRLSPLDPELYRMQAGMGVAHLFLGHHDAATAWAEQALRELPSFLMTVAIAAAGHALAGHGAQARRAM
DQLRRLDPALRLAGLSEWLPIRKGENLAILAQGLRLAGLPE
>SEQF1086_CAE42656.1 putative conserved inner membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRLLFLVLLVLLGLIQYPLWLGKGGWFKVWDLQRQVAEQRETNDGLRARNTALEAEVRDLATGVGAVEERARSELGMMRE
GEVFVHILPPGTPLPSDNSTPQASALSKPRPPATPPRR
>SEQF1086_CAE42657.1 enolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAIVDIIGREILDSRGNPTVECDVLLESGAMGRASVPSGASTGSREAIELRDGDKGRYLGKGVLRAVENLNTEISEALM
GLDAQEQTFVDRTLIELDGTDSKERLGANAMLAASMAVARAAADESGLSLYRYFGGSGPMSMPVPMMNVINGGAHANNTL
DLQELMILPVGAASFREALRWGAEVFHMLKKLIHDQGMSTAVGDEGGFAPNVASHEAAIQLILKAITEAGYEPGTQIALG
LDCASSEFYRDGKYTLAGEGGVSLSSQEFANLLATWCDKYPIISIEDGMAENDWDGWKLLTDQLGKKVQLVGDDLFVTNT
RILREGIQKGVANSILIKINQIGTLTETFAAIEMAKRAGYTAVVSHRSGETEDSTIADIAVATNAMQIKTGSLSRSDRMA
KYNQLLRIEEELAEVASYPGLEAFYNLR
>SEQF1086_CAE42658.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAYLIADVSVTKPAQYEDYKRLSTLAMRAYDAKVLVRGGESRHLEGREPGRTVIMEFPSVDKAQAFYDSYQYRRARNAR
EGAAIMNMFIVQGM
>SEQF1086_CAE42659.1 2-dehydro-3-deoxyphosphooctonate aldolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMKACGFDIGLDHPFFLIAGPCVIESRELAFETAGRLKEITGKLGVPFIYKSSFDKANRSSGKSFRGPGMDEGLKILADV
RAQLDVPVLTDVHDIDQVAPVAAVVDMLQTPAFLCRQTDFIRACAATLKPVNIKKGQFLAPHDMLQVARKARDAALEAGG
DGNNILVCERGASFGYNNLVSDMRSLAIMRETDCPVVFDATHSVQLPGGQGASSGGQREFVPVLARAAVAVGVAGLFMET
HPNPACAMSDGPNAVPLDRMAELLESLVALDRVTKRSGFLENQFV
>SEQF1086_CAE42660.1 CTP synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTKYVFVTGGVVSSLGKGIAAASLAAILESRGLQVTLLKLDPYINVDPGTMSPFQHGEVFVTEDGAETDLDLGHYERFIS
ARMRKVNNFTTGQIYESVLRKERRGDYLGKTVQVIPHITNEIQDFVARGAEAAWNGATDVAIVEIGGTVGDIESLPFLEA
ARQMSLRMGRNNAAFVHLTLVPYIASAGELKTKPTQHSVQKLREIGIYPNVLLCRADRRIPDDERAKISMFSNVPLDAVI
SVWDVDSIYKIPAMLHKQGVDNIVCEALGLTPPPADLSMWDNLVDALEHPQDSVTIGMVGKYVDLTESYKSLSEALVHAG
IHTRSKVNIEYIDSEDIETRGTDQLKHLDAILVPGGFGKRGTEGKIAAIRYARENGVPYLGICLGMQLAVIEFARHVAGL
GGANSTEFDPAAPHPVVALITEWMDREGRVERRDNSSDLGGTMRKGAQRCPIRPGTRAQSIYGDDVNERHRHRYEVNNVY
VPRLEDAGMVISARTPTENLPEMMELPSHPWFVGVQFHPEFTSTPRDGHPLFSSYIRAALEHKAQRAKEA
>SEQF1086_CAE42661.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWGFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE42662.1 putative aminopeptidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSVTDNRIGALRRAMRQHQLDAYIVPSADPHLSEYLPGRWQGRRWLSGFTGSVGTLVVTRDFAGLWVDSRYWVQAENQLA
GTGVTLMKIAQASTPGHVDWLAARLPAGSRVGVDGQVLGLAAFRALSAALAPAGIHLDILSDLLQAIWPDRPGLPSAPVY
ELPAPHACEPRADKLARVRAAMRAQGADAHWLSTLDDIAWLFNLRGSDVEYNPVFLAHALVGPDHATLFVADGKIDAALR
QALAADGVETADYGLAAEALGSLHTDQTLLIDPARVTCGVFHAMDPAVPRIEAINPSTLYKSRKSDAELASVRAAMEQDG
AALCEFFAWFEGAVGREPVSELTIDERITAARSRRPGYVCPSFATIAGFNANGAMPHYRATPQAHAAIEGDGLLLIDSGG
QYLGGTTDITRVVAVGAPSADQKVDFTLVLKGMIALSRASFPRGTPSPMLDAIARAPIWAGGAEYGHGTGHGVGYLLNVH
EGPQVISYRAAPGPHTAMEPGMITSNEPGIYRPGRWGVRIENLVANRTWLEGELGEFLCFETLTLCPIDTRCIDATLLRA
DEIAWLDDYHRTVRERLAPWVEGAALQWLQARTRPLGAD
>SEQF1086_CAE42664.1 probable D-aminopeptidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQAPRRSGRPRGGPVISRAVATRTNAMEQLDLPRIGMLPAGELDSIGDVPGVTVGHFTLAQGARQTGVTVVRPHEGDPFR
NKVPAAATVLNGFGKSCGLIQVEELGVLETPIALTNTFAVGAVANAQIRQAIAANPEIGRAWPTVNPLVFECNDGYLNDI
QAQAVAEAHYEQAWRGAASVFEQGSVGAGRGMSSFGFKGGIGSASRLAEAYPGQRYTVGALVLSNFGQRSSMTIAGRPFG
RRLAAAARDGEPAGQPEKGSIILLLATDAPLDSRQLRRLSLRAGAGLARTGSVFGHGSGDIALAFSTAYTIPHLAERGMP
VQVMLHETRIDALFEAAAEAVEQAIVAALWRAETVAGRDGHVRRAIREAAPQWRQWLAETAF
>SEQF1086_CAE42665.1 putative binding-protein-dependent transport permease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSHTNTAAVAAQAAKEDVRTPASEFWRKFKKQKLAVGAGLFVLLLALIAILAPWIVPFDPENFFDYDALNAGPSATHWLG
VDSLGRDIFSRIVMGARISLAAGFLSVAMGAVVGTFMGLMAGYYQGWWERITMRISDVLLAFPGMLLAIGVVAILGSSMV
NVIVAVAVFSVPAFARLVRGNTLAIKQMTYVEAVRSVGASDWTIIMRHILPGTISPIVVYGTMRIATSIITAASLSFLGM
GAQPPTPEWGAMLSEARADMVIAPHVAIFPALAIFFTVLAFNLLGDGLRDALDPRIDRK
>SEQF1086_CAE42666.1 putative binding-protein-dependent transport permease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLTYIVKRLLGMIPTLLLVAVVVFLFVHMLPGDPARLAAGQEADQETVELVRQELGLDLPLPQQFVRYFGHMLQGDLGTS
LRTKRPVSTEIADRFMPTLWLTLASMIWSVVFGMAIGVVSAVWRNRWPDRLGMTLAVSGISFPAFALGMMLMQVFSVNLG
WLPTVGASSWKHYILPSLTLGAAVAAVMARFTRASFVEVIQEDFVRTARAKGLSERVVVTKHALRNALIPVVTMMGLQFG
FLLGGSIVVETVFNWPGLGRLLVDAVTQRDYPVIQGLVLLFSLEFILINLIVDVLYGVINPSIRYK
>SEQF1086_CAE42667.1 putative binding-protein-dependent transport periplasmic protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMKVLHPTKLVAAATLAFSVLASPLAHASKDVTFAVAIALETLDPYNTNSTLNQAAGKAYYEGLFEFDKDLKIQNLLATG
YEVSPDGLVYTIKLRDGIKFHDGTDFNADAVKANFDRVANPENRLSRYTQFNRVAKTEVVDPHTVRITLKEPFSAFINAL
AHPAAMMISPAALQKYGKEIGFHPVGTGPFKFVEWKPAEYLKVEKFDGYWRKGYPKVDTLTFRTVTDNNTRAAVVQTGEA
QFAFPIPYEQAAVLAKNDKLDVVDHKNSIMARYLSMNTRVKPFDNVKVRQAINYAINKQALAKVAFNGYATVVDGVVPQG
VDFAYKIGQWPYDPAKARALLKEAGYPNGFETSLWSAYNDGTSVKVVQFLQQQLAQVGIKASVEVLESGQRVQRVQQVQK
PEDAKVRMYYAGWSSSTGEADWGLRPLLSTAAFPPVMNNISYYSTPKVDDSLMKALATTDRSEKAELYKNAQETIWNDAP
WAFLVTQNNVYVKSKNLSGVYVEPDTSFWFGDIDLKQ
>SEQF1086_CAE42668.1 putative ABC transporter ATP-binding subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVDRANSLAMPENRVVQVEDLTVRFVGAERTVEAVRNLSFHVDRGETLAIVGESGSGKSVTSLALMRLVEHGGGRIAQGR
IALRRRNGDIVDLGASSQRAMRSVRGADMAMIFQEPMTSLNPVFTAGEQIAETIRLHQGKDAAAARAEALRMLEQVRIPE
ARSVMDRHPHQLSGGMRQRVMIAMALACKPALLIADEPTTALDVTIQAQILQLIRQLQEEMRMGVVFITHDMGVVAEVAD
RVLVMYRGDKVEEGPSERIFAQPRHHYTQALLSAVPKLGAMQGTDHPARFPLLRVDESAAAEPEPPATPAGPAPAESGPA
GERQPILSVRDLITRFDLRGGIFSRVQRRVHAVEKVSFDLYPGETLSLVGESGCGKSTTGRSLLRLVDSQGGQVHFGGRD
ITKLKTAELQALRRDIQFVFQDPFASLDPRVTVGFSIMEPLLVHGVASGKQAERRVAELLERVGMPPEMAQRYPHEFSGG
QRQRICIARALALDPKVVIADESVSALDVSIQAQIVNLLIDLQRDLGIAFLFISHDMAVVERVSHRVAVMYLGQIVEIGP
RRAIFENPQHPYTRKLMAAVPIADPARRHMSRTLLSDEIPSPIRQLNDEPVVAPLVAVGPDHFVARHSVGGAY
>SEQF1086_CAE42669.1 putative L-asparaginase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQPIIAIHGGAGAISRAAMPADKEKEYLDALARIVAAGQAVLAGGGSAIDAVTEAVRLLEDCPLFNAGHGAVFTSAGTH
ELDAAIMDGATLRSGAIANVDCVRNPVRAARAVMEHSKHVFFVGEGAVALAREHGLELVDPGYFSTEARREQLLRVQRET
PGAAVLDHDGQALVTQGQPAPADPLDADRKFGTVGAVALDAQGNLAAATSTGGITNKQVGRVGDAPLIGAGTYASNRTCA
VSTTGTGEMFIRMVAAYDVAAQMEYCGATLAQAADRVVHDKLPTIEGKGGLVAVDAHGNVALPFNTEGMYRGHGRVGEPP
VVAIYR
>SEQF1086_CAE42670.1 putative transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLPPTSIADRIARAQPAFSRTQHRMAEYVLAHQFRVATMTIDEFAVAVGVSVATANRFARVLELPGYPQFRAELARGFE
SALEPVEKLRIELAHSASAAQVFAATLQEDIYNAQMTLQALDAGACERAVEAILNAERVFIIGFGASGFLAGLLQRGLCM
HLHAVESLAGPGGVSHAARQMSRMTSRDLVIALAFPRYLADTVTLANAAKLAGVPVLVLTDKPTSPLAPCATVALYAHMS
RQLSSNAETAALGLIEALSAAVAHRAKNSIAAAAGVAQSVMPWLIHGEAGAGKR
>SEQF1086_CAE42671.1 putative coenzyme A transferase subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAWSRDEMAARAARELQDGFYVNLGIGLPTLVANHVPKGVEVWLQSENGLLGIGPFPTDDEVDADLINAGKQTVTTLPGS
SIFSSADSFAMIRGGKINLAILGAMQVSEKGDLANWMIPGKMVKGMGGAMDLVAGVGKVVVLMEHVARKKDGTEDIKLLP
ECKLPLTGVGVVDLIITDLGVMKVTEDGLKLLELAPGVTVDEIKAKTLAKLDVSAVK
>SEQF1086_CAE42673.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRDEHAVRTLEVGDAHQVDIPLRWGDSDCLNHVNNTIYFRMMEEARVRILYEAGYELPGQFGVILAHASCDFLRPLTYP
GEVRVTHTVVRIGRSSMDLDLTLEKVGEEGEPYARSRNVLVWVNYQTNRAEPWPARLLERMAAQMRPAA
>SEQF1086_CAE42674.1 putative electron transfer flavoprotein-ubiquinone oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEYDVVVVGGGPAGLAAAIRLKQLAAEKNHEVSVCVLEKGSELGAHILSGAVMDPQALTELIPDWKEKGAPLNVPVTQDK
FLFLSATGARSTPNWLLPACFHNEGNYIVRLGDVVKWLGEQAEALGVDIFPGFAAAEVLYDENGAVHGVATGDMGVARDG
THTDHYQPGMELLARYTLFAEGSRGQLGRQLIGRYKLDEGRNPQSYGIGIKEMWEVDPAQSRPGLVVHTAGWPLDSDTYG
GSFLYHLDNNVVVVGLIVGLDYANPWLSPFEEFQRYKTHPAIRGTFEGGKRIAYGARAITAGGLLSLPKLAFPGGALIGC
EAGFLNASRIKGSHAAIKSGKMAAEAAFDAVASDRSHDELASYASAFESSWLHAELNKARNFKQWFKKGRTVGTFMTGIE
QWLLKGKFPWTLRHNKPDHACLQPASQCARIDYPKPDGKLTFDKLSSVFISNTNHEENQPVHLTLKDDSVPVAVNLAKYG
GPESRYCPAGVYEFIKDDHGADRLQINAQNCVHCKTCDIKDPTQNIVWVAPQGGEGPVYSGM
>SEQF1086_CAE42675.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSERVLLAGCGDLGVRVARRLLARGDQVWALRRQPPPAEDGGLRWIAADLTQPATLAGLPDGLTQVVYLPAPGAHDPARY
REIFVDGLRHLRDALDTAALRRTLFVSSSAVYGEHDGQWVDEHTPPGPLGFNGRSLLEAERSLDAWPGQAVVLRLAGLYG
PGRLQLLERLRAGQARAPVDPPHWANRIHIDDAAAAIAHLLRLPAPEKLYLGCDDTTLPLHELYAALATLAGAPPPGEGP
APAQVGSKRLCNARLRASGLQLQWPDSRAGYAALLDGKATLQATIHTTTKRSIP
>SEQF1086_CAE42676.1 putative cytochrome p450 oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIADTARQHRGDSMQPADPLEAVAHPDPYPYYAALARERPFYHDDRLGLWVAAGPQAIRAVLTCPAARVRPPGEPVPAAL
GAGPAAQMFGRFIRMNDGAVHERLKPMLTAYLTQRTAADLAEPAWPAIGNDPAQVDRYLYQAPVHAQACLMGLPDEVAAS
CAREIEAFMAACRPGADAAAVARADQAAQALQARMLAHLRAARGDAALGVLRRLALAGGVEADALAANLAGLLLQSCEAG
AGLLDNALVHAGRLSPAAAPDLLHTCVEIVTHVARHDPPLHNTRRFLAAPATLLGQSAPAGAGILVVLAAAHALAEGAWP
WTFGAERHACPGRTPALLHAAQALAHALRHGVDAPALARCVRYRPLPNARVPRFHFPPGDTP
>SEQF1086_CAE42677.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIAVIFEVQPAAEGGRAAYLDIAAGLLPHLRAIDDFISVERFESLSTPGKLLSLSFWRDEEAVRNWRALAEHRQAQSAGR
NGVFQDYRLRVAHVLRDYGMQARDQAPPDSRQAHDGPAGG
>SEQF1086_CAE42678.1 low-specificity L-threonine aldolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIDLRSDTVTRPSAAMRQAMAAAPVGDDVMGDDPSVRRLQDEVAARAGKEAGLFFPSGTQSNLAALMAHCARGDEYLVGQ
QAHTYKFEGGGAAVLGSIQPQPVDHAADGSLPLDRLAAALKPGGDPHFARTRLLALENTFQGRVMPAGYVAQATGWAREH
GLSTHLDGARVFNAAVASGVPVQQLCEPFDTVSICFSKGLGAPVGSVLVGSRALIEQAHRWRKMLGGGMRQAGILAAACL
HALHHHVERLALDHDNAARLAAGLDGIDGVRVLGQHTNMVFAEFDPARCESLTTALRGQGILMRAVYGGPTRLVTHLDVD
ADGIDRVVDAVRGHCAAAR
>SEQF1086_CAE42679.1 putative integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRAAFDRVGLMLLTIFVWAGSWIAMKLVVPYIGPFDFIAVRYLAGAVVLFSILVATGRPLGMPPWKLTLLAAATQITGF
QGFVQTALISGGVGKVSLMAYTMPFWVVLFAWALQGERPTARHWGGIALAAVGLVCFLDPWAGLGDLAPVALGLCSGLCW
GLGTVLSKRMFERHAPDIMTFTAWQMLLGGVVILPFAWLVPQIPAQWGGWRLWLGMSYIVLVATALGWILWLLVVRRVPA
SIAGLSSLGVPVVAVLLAWAILGERPTLTEMAGMALILFGLWVVSRAARPAPRAAS
>SEQF1086_CAE42680.1 acetyl-coenzyme A synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNAIQSVLVENRVFPPPASAVQGAAISGMDAYWALCEEADKDFNGFWSRLARENLQWTKSFTQVLDESEAPFYRWFGDG
ELNVSANCLDVHLHNGNADKTAIIFESDDGKVDKISYRELLARVCRFANGLKAMGYKKGDRAIIYMPMSIEAVVAVQACA
RLGVTHSVVFGGFSAKSLQERIVDVGATVVITADEQVRGGKTIPLKPAVEEAFAMGGCEAVSKVVVYRRTGGKIAWQEGR
DVWMHDVEAGQADTCEPQAVNAEHPLFILYTSGSTGKPKGVQHASAGYLLWALLTMKWTFDARADDVYWCTADVGWVTGH
TYITYGPLAAGVTQVVFEGVPTFPNAGRFWDMIARHKVSVFYTAPTAIRSLIKAAEANQEVHPRQYDLDSLRIIGSVGEP
INSEAWIWYHKNVGRERCPVVDTWWQTETGGHMLTPLPGATPLKPGSCTLPLPGIVAAIVDETGGDVAQGNGGFLVIKRP
WPAMIRNIWGDPERFKKSYFPPELRGYYLAGDGAQRDADGYFWIMGRIDDVLNVSGHRLGTMEVESALVAHEMVAEAAVV
GRPDDTTGEAVVAFVVLKRSRPEGDEAQAIARQLRDWVGKEIGPIAKPKDIRFGDNLPKTRSGKIMRRLLRVVAKGEEIT
QDVSTLENPAILEQLAKPL
>SEQF1086_CAE42682.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTKPVLVADDVKKILAAAEAHALANKWAVTIAVVDDGGHLLGQLRLDGAAPISARIAPAKAGTAALGRRESRVYEEIIN
NGRQAFLSAPLLEGMLEGGVPVTVDGEVVGAVGVSGVKSSEDAEIARAGIAALGL
>SEQF1086_CAE42684.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHRHSNPALPERNISLSSRGLRLLAVVACAVGLAGCAGTGAKKTSYTFESDPYDTEWVASADDPIGILVTQKLKRDRRAG
QSQTSGENPLVSEALGQLGVRYRFDGISPDTGFDCSGLVAHTAERSLGLKLPRISADIARWGTNIDRKELRPGDLVFFNT
LGRRYSHVGIYMGENRFIHSPSSGGVVRVENMTVAYWAKRYNGARRIDDSRLASARASN
>SEQF1086_CAE42685.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAGLSAVVVGADRLGNIPDLLKGHNISITHHISGRDPSHQKKTLQLPSGTQLVILLTDFLGHNVMKTFRHAAQRGGIRV
VACRRSVCSMQQALHQCGLCARSLPRGNAVPPS
>SEQF1086_CAE42686.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLGEYNLLTVHN
>SEQF1086_CAE42687.1 putative LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNLQQFRFVRETIRRDFNLTEAARMLYTSQPGVSKAIIEFEDELGIKIFERHGKRIKGLTKPGLAVSQVIDRIMREVDNL
KKVSDEFARRDEGGLVIACTHTQARYLLPRVIPAFRKQFPKVHLSVAEGSPSQLAEMVLHEQADLALATESLALTPGLAT
LPVYTWEHTVVVRPDHPLTELTSSQARRLTLAQLAEYPIVTYDRAFTGRTTIDEIFANQGIHPDIVLEAIDADVIKTYVD
VGLGIGIIAGVAYDPRRDANLVGLPVGHLFGTHTTRVGVKSGVFLRDYVYTFMEMMAPGLTRQVVSEAVQGRAGLNG
>SEQF1086_CAE42688.1 putative oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIGGKLVQSKTTQWRDVINPATQEVVAQVPFATREELDLAVANAKEAFKTWRNTGQGARMRVMLKLQQLLRDNTGKLAEM
ITREHGKTLPDAEGEVGRGLEVVEHACSIANLQLGEYAENAAGGIDVYTLIQPLGVCAGITAFNFPVMLPCFMFPIAVAC
GNTFVLKPSEQDPSSSLFLAQLALEAGLPPGVLNVVHGGPDIANGLCEHPDIKAVSFIGSTRVGTEIYNRASAAGKRCQS
MMGAKNHCVILPDADPEVALNQLVGAAFGAAGQRCMATSVAVMVGEARNWLPDFVERARKLKVNNGVDREADLGPLVSPA
AKQRVEGLIQKGVDEGAKLLLDGRSLKVAGFEQGNFVGPTIFDGVTENMTIYTEEVFGPVLCVVGVDTLEDAVEFINRNP
NGNGVALFTQDGGAARYFQNNIDVGQVGINIPIPVPVAWFSFTGSRGSKLGDLGPNGKQAVQFWTQTKTVTARWSAHGRG
VNTTISMK
>SEQF1086_CAE42689.1 putative ABC transport protein, substrate-binding component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKSRARGFAAGLCLGAMLVGQAMAADKPPVKIGILTDMSGTYAGMGGPGSVAAAQLAIDDCLAAECKGMKIDLVSADNQN
KTDVGAAKAREWFDRDGVTAIADLTNSAVALAVQGIAREKNKVVMFSGPAATALTNQDCSPLGFHWMFDTYSQSAGGAKA
TVRAGGKSWYFITVDYAFGHSLEADTAKAVQALGGTVAGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQ
AREFGIVEGGQRLVSLLVFLSDLRALGLDNAQGLSYVDGFYWDYDDATRQWSARFEKAFRGLKPTMVQAGVYSSVLHYLR
AVAASGSTDGKVVADKMRELPIKDPIMRNASIRPDGRVIHDMYLYEVKKPAESKGGWDYSKLVATIPAAEAFQPLAESTC
PLVKK
>SEQF1086_CAE42690.1 probable LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLDWDSLRYFLEVARTQRVSAAARKLGVEHTTVARRVRALEAELDSLLFEKSRSAGYVLTEDGQRLFVFAEQMESTVHTA
RENLSGIGQALSGHVRIGATEGFGSYVLTPLAADFQRRYPHITLDILPVPRFVSLSKREADLAITIERPQRGPYVCTKLC
DYTLMLYGTPAYLARHAPIRERADLAGHNFIGYVDELLFSERLRYLEDVLPNSQVVLRSTSVIAQYHATLQGQSLAILPC
FIAAQDPRLTPVLPDDIAITRSFWMYCHEDLRRLKRVSALWEFMRRSVMRNAALLQGRGAALQYLP
>SEQF1086_CAE42691.1 putative integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLFKRSVVSEITSHAGVVFSTLVVVWLSVLLVRLLGEAAGGSIGADVVLGLAAFSTITALPTILAVSLFIAVLTTVTRN
YRESEMVVWFASGLSLADWLRPVARVAVPIAMLVAALTLVASPWAYRQIGEYRELFEQRSDLSKVTAGQFAESGRGDRVF
FAEDPVRPGDELGAVFARSIDPEWLSVLTASNARSETLPNGDRFLVLGEGHRYDLKPGTPEIRLVNFDQYGVRLESKAGE
DPMAEARAAAERSSKARSTMQLVQDNTDSSWSQIMWRVAMPLAALNLALLAIPLGAVNPRLGRSGDLLIAGLVGLLYMNM
INLSRAWISSGKISFSIGVWAVHAVVALLAAYLLMRRLRVKAPRNAGRGA
>SEQF1086_CAE42692.1 cytosol aminopeptidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEFSTQTTASLHQIKTAALAVGVFADGVLSAAAEVIDRASHGAVAAVVKSEFRGRTGSTLVLRSLAGVSAQRVVLVGLGK
QAEYNARAHASAEQAFAAACVAAQVGEGVSTLAGVAIEGVPVRARARSAAIAAGAAAYHYDATFGKANRDARPRLKKIVQ
VVDRAASAQAQLGLREGAAIAHGMELTRTLGNLPGNVCTPAYLGNTAKKLAREFKSLKVEVLERKQVEALGMGSFLSVAR
GSEEPLRFIVLRHAGKPAKKDKAGPVVLVGKGITFDAGGISLKPAATMDEMKYDMCGAASVLGTFRALAELELPLDVVGL
IAACENLPSGKANKPGDVVTSMSGQTIEILNTDAEGRLVLCDALTYAERFKPAAVIDIATLTGACVVALGNVNSGLFSKD
DALADALLAASRQSLDPAWRLPLDDAYQDQLKSNFADIANIGGPPAGAVTAACFLSRFTKAYPWAHLDIAGTAWRGGKDK
GATGRPVPLLMQYLLDQAG
>SEQF1086_CAE42693.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRIDFAFGAPDRLRAACRTARKRFQAGQRLVVYCADGGRLAAFDRMLWALEDVSFVPHVLANDALAADTPVLLTAGDPA
AALALATTGDSRPWLLNLDDGCPPNFDGYERLLEIVSDDPADRQAARQRWRDYQNAGHALHSHDLSRAGEA
>SEQF1086_CAE42694.1 hypothetical protein BP2423 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPHHYSDSSIPTLTDRVEPGLGSPQAPAAIPRLSEQASAPPVSDESGAASAPDTPFQPGDAVLRAVLQAELEETLTAAID
EAVAGIRARLDAELPAILARVMRNVRPG
>SEQF1086_CAE42695.1 putative integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNETRPSPFNRSGAYAGAPGEVVRNKVLRNTYWLLALSLVPTVLGAAVGLYTGINQVMGASPGLSAIVFLVGAFGLMFAI
EKNKNNSLGVVLLLAFTFFMGVMLSRLLGFVLGMGNGAQLVMTAFGGTAIVFGTMATLATTIKRDLSGMQKWLFTGAVVI
LVAALANIFLQMPALMLTISVLAIVIFSAFMLVDLQRVINGGETNYVSATLAIYLDVYNVFSNLLMLLGIFGGDRE
>SEQF1086_CAE42696.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYLRYALAGALTLACSGVQAEDFPARAITMIVPAAAGGNADITARLVGQEMSKQLGQPVVIENRVGAGGRIGTQAVVRAA
ADGYTIGYAHVGTLVLHRFLFKEQMYDIDKDLAPIGLVAETPNVIVVSQASPYRTLQDLIGASKAQPDRITMTSADPGTT
SEVGVKLFIAQTGAGVRQIPYKATAAQLADLLGGHVDSMMENLPPLIGNLKDGRLRALAVTTRKRVASNPDVPTVAEQGY
PDYEQGAWSALVAPAGTPPEALARLNQALNAALAAPAVSAELRSRSQEPLGGPPAQVQAQVDKELPKWRSVIQAANP
>SEQF1086_CAE42697.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLLMAGVHGDEWEGQAALLELWHALPGLLRRGTVYVAPAANAEASLAGTRLSPADGGNLNRAFLGAPARGYTEAVAHALQ
TRILPQVQYMIDVHSGGASLRYLPATVITRYGDDPWDERVARLARGFGLARCLFFRGVETGSMPAAASRLGVARLSAEIG
GGAETSQELVRLCRDGMLSCLAGLDMVDAHHAMPGPLEAFHDVDAPRASMRADAPGVFIPSVALGQQVAAGQQVGTLCEP
ARPDRPPLTLASPQDGTVVCLRALARSDDGDCLLQIAPARPFETLSTLY
>SEQF1086_CAE42700.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRNHAMTFTLRQVETFRTVYETESVTAAARRLDVSPATVSATLAALETAISMRLFERVRQRMVRTPEADLLYEEIRRQSL
GLETLGRKIRAIKGAGQPRLRVGTIHAYSGLVIEQALVRFRGRYPDTPLYLQVRDSNTLRDMVVAGELDLALVADESELQ
GLRGHCLARLGAVAVFPRGHALARFAQLELSQLADAALVLLNREDGSRKRLDAVFAQRGIAPHAAIETPYSSTVCQLALA
GHGVGIANPATAMGMAQAGLEFRPLDADVHFACYMILHGSRPLSSAGKYWATCLRAALAPLVEQFGVDAQV
>SEQF1086_CAE42701.1 hypothetical protein BP2429 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRRAQRVHDIPGYMLHATAWRETSLIVQAFSREYGCIALVAKGAKRPYSVLRPVLSAFQPLLLSWSGAGEVKTMTRAEI
AGVRPLGGPALMSAWYMNELLLRLLPCEDAHPVLYDAYDTALTQLSAGSRAAGALRRFEWILLRETGYGLDEAEPDFNDP
AIEPALRRDLRERLEANLAGRPLSTRKVLLELQRL
>SEQF1086_CAE42702.1 GTP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNPQFRAGFVAIVGRPNVGKSTLTNALIGTKISIVSRKAQTTRHRIHGVLTREHEQFVFVDTPGFQTRHGGAMNRMMNR
VVTQALADVDVVVHVVEAGKWSEGDAKLLPLLPKSRRSILVVSKIDALKNRDELFPFVSKLMALHAYDAVVPVSATKGQQ
LDQLLDEIAAGLPQGDPMFEEDTLTDRPVRFIAAELVREKIFRLVGDELPYGCTVVIEQWEETERGVRIAACVVVERESH
RPILLGAGGMHMKRIATEARQDIAKLLDMPVHLEIYIKVRKGWSDREGALRDLGYE
>SEQF1086_CAE42703.1 ribonuclease III [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAMSLATLETRLDHRFGDKALLEQALTHRSHGARHNERLEFLGDSVLNFVVAAMLFERYGKLDEGDLSRLRANLVKQAS
LADIAQRLDLSQYLRLGEGELKSGGFRRPSILADTVEALFGAVFLDAGFEAARRVIVRQYQPVMAHVDPKTLGKDAKTLL
QEFLQGRKLALPQYTVVATHGAAHSQQFEVECAIPALEIKIVAPGASRRAAEQSAAKVALEAAQAVLPAARAARKSGKAR
KTAQLSLPVAVAQEVK
>SEQF1086_CAE42704.1 signal peptidase I [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSWNFALILFVLLVITGVIWGLDLALFRKRRERRAQAAAAQVDAAGITDAEQAGRERREAIDAARRAPWWIEYAVSFFPV
ILFVFVLRSFVVEPFHIPSGSMLPTLQSGDLILVNKFSYGIRLPIIDRKIIETGSLERGDVVVFRYPVDTDVDYIKRIVG
LPGDQVAYLDKKLYINGKLVPHERDGDYFEPDRVSYIAQYKEKLGEVEHKILLDEQKIQDFGPIWKFPSIQNCQYARNGV
RCTVPPGHYFAMGDNRDNSADSRYWGFVPDGNIVGKAFFVWMNFSDLSRIGRFH
>SEQF1086_CAE42705.1 GTP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQHIRNFSIIAHIDHGKSTLADRLIHRCGGLAEREMSAQVLDSMDIERERGITIKAQTASLQYKSQDGTVYNLNLIDTPG
HVDFSYEVSRSLSACEGALLVVDASQGVEAQTVANCYTAIELGMEVLPVLNKMDLPQADPEAARQEVEDVIGIDASEAVL
ASAKTGMGIDEILESIVARVPPPKGDPSAPLQALIIDSWFDNYVGVVMLVRIVNGVLKPKDKILLMASHATHLCEQIGVF
TPKSQPRPELSAGEVGFVIAGIKELEHAKVGDTITLAGKPAAEPLPGFKEVKPQVFAGLYPVESSEYDQLRDSLEKLKLN
DAALMFEPEVSQALGFGFRCGFLGLLHMEIVQERLEREFDMDIITTAPSVVYEVEQRDGTVVTIESPSRMPEIAKIADIR
EPIVKVTLFMPQEYVGPVMTLCNNKRGVQLNMSYHGRQVHLTYEIPLAEIVLDFFDKLKSVSRGYASMDYEFVEYRSADV
VKVDLLINGDRVDALAMIAHRNNARYRAREVVSRMRGLIPRQMFDVAIQAAIGAEVIARENVKALRKNVLAKCYGGDISR
KKKLLEKQKAGKKRMKQVGSVEIPQEAFLAILQVEDK
>SEQF1086_CAE42706.1 serine protease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKAITVSNLFFRRFGAAALVAFMAVTAAGTQVQAQTQVAPPAVALPDFTGIVEKVEPAVVNIRTTATVPVRGGPGGGNDP
YELFRWFFGPDFQPPGPAPGQRRKQPQPQPEERTIPRGVGSGFFISADGYILTNNHVISDATDIYVTLTDGREFKAKVIG
SDDRTDVALIKIDAKDMTPLTIGDPKTLKKGQWVLAIGSPFGLDSTVTAGIVSAIGRDTGEYLPFIQTDVAVNPGNSGGP
LLNLQGEAVGINSQIISRSGGFMGISLAIPIDEAMRVVDQLRATGKVTRGRIGVQIGEVGKDVADAIGLPRAEGALVSSV
EAEGPAESAGVQPGDVILKFNGEPIKRWSDLPRIVGETKPGTSAKMDVWRKGRNVTLSVKVAELKSDRSAATADEGKQAE
PTAENHLGLGVVDVPSDMQRKLRIKGGAQVRVAEGAAAQAGLQEGDIVLAVNDTDVTDAAQFNKLVSRLDKKKAAGLLVR
RGDQTQWVAVQPASK
>SEQF1086_CAE42707.1 putative sigma factor regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTPLLYMRRPALGRMTWRQRQTAGLAAMAVLMGLMAIYARPVRAAAPAVPEDPVLLLSSIQQAARKQDYAGVFMYQQGES
IQSSRLVHVLDGTGERERLEILDGQPREYLRHNEDVQCLIPERKTVLLERRRGDRFPGLLLGDPAGLAENYHIRAESQLH
RVADRQCRLITVEPRDALRYGYRLCADVATNLLLKAQTLDAARRVVEQVSFTSIRLGGDVDPAMLTSRWSTRDWRVLEPV
MKPVDLAAQGWRITAPKGFSAVLQVARSMGPATVNQLVLSDGLAAISVFIEPYDSRRHAHPPEGLARRGAINIYGTRIAD
FWLTALGEVPAGTLEQLAETTEYVPVDAAKQQ
>SEQF1086_CAE42708.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAVMQTAAKSLTAESSWEESVSAWMDGEGSEDFFPEMSHPHGRQTWDTYHLIGDALRNADLAVSPSAQFQARLARALEAE
LPIVAAPRRRSPLRLGLSGLAVAAAVATVAWVAHPYLTGAPTGETRVLADATPASAGDDAGLRDYLEAHRQVAGPSAVRQ
VSFDAGAGR
>SEQF1086_CAE42709.1 RNA polymerase sigma factor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSERDVDAELVARVQRGDKKAFDLLVLKYQRKILRLLARMIRDPAEIEDVAQEAFIKAYRALPQFRGDSAFYTWLYRIAI
NTARNWLASSGRRPSAPNAIETEDGETFNETDNLTDISTPESMAATREIAETVNAAIEELPEELRTAIVLREIEGMSYED
IAQSMDCPIGTVRSRIFRAREAIASRLRPLLDTDAERRW
>SEQF1086_CAE42710.1 putative integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNPDGGIFDNRWHLRLPVRVPALAVALGLLAMLAAAGSAAVALVQLQWLAPLSAGMLAVAAGGLGGLLWLRGSRGGAPAL
CAAPVPGGWRVLGGRGWMQARLLAVRQGPLWLRLELGLDAEAGSRVTNSKIICTVWRPALPPGHWRRLRLMATAAHVQAA
TSWGAS
>SEQF1086_CAE42711.1 3-oxoacyl-[acyl-carrier-protein] synthase II [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRRVVITGLGIVSPVGNDIASAWDNIVNGRSGISRISRFDPTPLTTHIAGEVKDFDVTQYMPAKEARQMDTFIHYGLAA
GMQAWRDCGLEVTETNAERIGVIVGSGIGGLPRIEETQTEMLAKGPRRISPFFVPASLINLISGQLSIAYGMKGPSYAVV
SACTTGLHCIGDAARLIEYGDADVMLAGGAESTVSPLGIGGFAAMRALSTRNDDPTTASRPWDRDRDGFVLGEGAGVLVL
EEYEHAKKRGARIYGELAGYGMSSDAHHITAPDKDGPRRGILNALRNGGINADEVSYVNAHGTSTPLGDKNETDALKLAF
GDHASKLVVNSTKSMTGHLLGAAGGIEAVFTTLAVHNQISPPTINIFNQDPECDLDYCANEARPMKIEIGLSNSFGFGGT
NGSMAVRRV
>SEQF1086_CAE42712.1 acyl carrier protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MESIEQRVKKIVAEQLGVNEAEIKNESSFLDDLGADSLDMVELVMALEDEFETEIPDEEAEKITTVQQAIDYINSHGKQ
>SEQF1086_CAE42713.1 3-oxoacyl-[acyl-carrier protein] reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEKTSTELQGKIALVTGATRGIGRAIAQELAARGATVVGTATSEAGAQAITEALAAQGGRGVVLDVTDAQACEALIEQLG
KDGGGPHILVNNAGITRDTLAMRMKDDDWSAVIDTNLAAVFRLSRAVLRGMMKARWGRIINITSVVGASGNAGQANYAAA
KAGVAGMARALARELGSRNITVNCVAPGFIDTDMTRILGEDQTAALLQQIPLGRLGAPADIAHAVAFLAGPQAGYITGTT
LHVNGGMYMQ
>SEQF1086_CAE42714.1 malonyl CoA-acyl carrier protein transacylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLAFVFPGQGSQSVGMLDAWAGNAAVADVVARASAALGQDLGALMAQGPAQQLNLTTNTQPAMLTAGAACFAAWRAAGG
PMPEVMAGHSLGEYAALTAAGALALEDAVRLVRVRADAMQAAVPVGAGAMAAVLGLDDDAVRAACQQAAQGEVVEAVNFN
APAQVVIAGHKAAVERACEAAKAAGAKRALLLPVSAPFHSSLLKPAAEVLQGALAGVEVSAPQVPVLNNVDVATPAEPAA
IRDALVRQAWHPVRWVETLRAMKELGVTHVIECGPGKVLTGLTKRIDADLTGIAITDPASLEAALAAVNGN
>SEQF1086_CAE42715.1 3-oxoacyl-[acyl-carrier-protein] synthase III [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEKAMKYAKIAGSGGYLPERVVTNDDLAAELATRQISTSDEWIVERTGIRQRHLAERGVTTSQLATEAARRAMDDAGVQA
DEIDMIIVATSTPDYVFPSTACLVQANLGAKGGAAFDVQAVCSGFVYAMTTADNFIRAGRARCALVIGAEVFSRILDWND
RGTCVLFGDGAGAVVLKAADEPGILAAHLHADGSQTKILCAAGNVAYGDVTGDPFLRMDGQAVFKQAVTVLDRSARDVCA
EAGVEVDDIDWLIPHQANVRILNFLARKLRVPTERVVITMDQHANTSAASVPLALDVARRDGRVKPGQLVLMQGVGGGFT
WGSVLARM
>SEQF1086_CAE42716.1 putative fatty acid synthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIRIAIDCMGGDFGLPVTIPAAIEFARQFPDTRLLLVGLPDAIEAALAERRDAPRDRLDIVPATEVVSMDDPVEVALRRK
KDSSMRLAAQAVKDGRADACISAGNTGAWMAISRYVLKTLDGIDRPAIATSIPNQTGRATTVLDLGANVDCSAEHLLQFA
IMGAALSQAVDHRDRPTVGLLNIGEEIIKGNEVVKEAAELLRASPLNFYGNVEGNDIFKGTVDVVVCDGFVGNVVLKSVE
GLAKMLSSVIREEFKRNFITLLAGAFAKPVLNRLRNRVDNRRYNGAALLGLRGVVIKSHGSADAYAFGFALQRAREAVAS
KLLERTAQTVAQITKRVQSGEAVAPGAAGDTA
>SEQF1086_CAE42717.1 50s ribosomal protein l32 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAVQQNKKSPSKRGMHRSHDFLVNPATAIEPNTGETHLRHHISPNGFYRGRKVLKTKADE
>SEQF1086_CAE42718.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGSGTDAQNAQSHIDAFMFARQAKRLEGSIPLMRLARFMEGLPEQSGGEAGLARWAVEGGTGQGSSRTGHPISGQPLLRL
RVRAAPMLVCQRCNQPFVYPVDNTVVLQLVKSEEDLDEDLSETQDEDFADDLPEKVVGSHNFDLLAQVEDELILSVPYVP
RHDVCPGAQAESGEASQEPAVKRPSPFAVLEQLKHKD
>SEQF1086_CAE42719.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPAIPPKLILASSSRYRRELLSRLRLPFTAISPDVDETPQPGEAPADLALRLSVAKAMAVAATHPGSVVIGSDQVATVDG
EPIGKPGGFERAREQLRRLSGRAVEFHSAMAVTDGVHTETADIVTLCRFRTLTDAAIDAYLRAEEPYDTAGSAKAESLGI
ALMDSIRSDDPTAIIGLPLIALTRMLGRFGLDPLTGHPA
>SEQF1086_CAE42720.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGALHLIPVGLGDAPPERWLPADVRALAGRLDTYIAENAKTARAFLKLLGTVRPLQEITIHTLTDAVPAGQIEQWLAPL
RGGAEIVLVSKAGCPAVADPGAKVVAAAHRLGLAVRPWVGPSSILLGLMASGLDGQRFAFHGYAPVDPAERARQLRAWEQ
HSARHDQTQILIETPYRNGAMFATLLAALRPDTRLCIARALTTGDELVQTRTIADWKRQPAPELDKKPTLFLFLAR
>SEQF1086_CAE42721.1 putative exported hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPWITRAAPIACLLALAGCAARGPAGLDLDTSITAVSQSSRVRAVVLHYTSTGNENSLKILSERKVSAHYLITDTPRPRV
YRLVDETRAAWHASISAWYDQSTMNSTSIGIELVNPGWTNGEGNWTRGGHGDTDSRHWAPYSDAQIETLIVLLRDIVARH
GIAPENIVGHSDIAPQRKVDPGPLFPWQRLAQAGLGRWYDEAGAAAHLARLQTEGVPDIAWFQGQLARLGYATPQSGVLD
TATRNVLAAFQMHYRPARHDGQPDAETAAIMLALR
>SEQF1086_CAE42723.1 putative membrane transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAGLRVFLFFSLGYLVSYLFRGLNIGFGPTLSAELGLSAADLGTLTSLYFLGFALLQIPAGVLLDTWGPRRVNAALLVV
AAVGTLVYGLSQGLPGLMVGRLLIGAGVSVCLGAAFQALALNYPLARLPLINGLVMAVGGLGGVLVGSPLSWLLNFSTWR
EVSIGMVVVTLCVAALLWFGAPREPARDRPHASLGEQLRGTFVLLRTAHYWRLVSLPVATGGVFYGVQSLWVRPYLTDVN
MLPAAPAAALVSLLGFAMMGGNVGLGAMARRVERMGLGLYGFSGVCLALFILIQLLIVLRAPVPLALLWAGYGVFGSANI
LVFALLAGEFPRELLGRVAATTNLLTFVSIFVCQVTFGWIVELWPRGDAVYEPGSYPAGGYLAAWGAFLALQIAVALYYF
WPRRRAASARQGA
>SEQF1086_CAE42724.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLFLLSPAKKLDYDSPVHVETHTQPLFVDQAAALIKVLKTKSADEIAELMSLSPALAELNAGRYGAWKRSFTQANSRQAV
LAFNGDVYEGLQADTLSARQLDWAQDHVVILSGLYGALRPLDLMQPYRLEMGTRLHTPKGKNLYEYWGSGIAEYLNERQA
GAKAPVIVNLASEEYFKVVDLKTLKARVVQCVFQDWKNGAWKVISFHAKRARGLMARYAIAHKVARPEGLQGFDSEGYAY
DAAASSADKLVFRRKQA
>SEQF1086_CAE42725.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE42726.1 putative oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLKGKVAVVTGSTSGIGLGIASALAQQGADIVLNGFGDAADIEKLRAGLASQYGVQVRYDGADLSKGEAVRQLVSGAVAE
LGRIDILVNNAGIQHTALIEDFPADKWDAIIALNLSAVFHGTAAALPHMKKQGWGRIINIASAHGLVASAAKSAYVAAKH
GVVGLTKVTALETAGMGITANAICPGWVRTPLVEKQITALAAKDGVDQESAARELLGEKQPSLQFVTPEQLGGTAVFLAS
EAAAQITGTTISVDGGWTAR
>SEQF1086_CAE42727.1 putative membrane efflux protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MELLTILLIAAVLCVPLAQRLGLGAIPGYLLAGGVIGPSGLGLVTDVPDIMRVSEWGVVMMLFVIGLELAPKRLWAMRRE
VFGAGTLQMVVCGALLGAVFGAGLRHLAGMGWQAAILCGLSLALSSTAVALRLLEERGLVRTPLGRSALGVLLLQDMAAI
PMLVAAGLLGSDGDSAPSFEAALVAVVVVLACYRLRLLDWAARSQLHELFTAATLLVVLGTAQLFDYAGLSAGLGGFLVG
MLLAESRHRNELEHTIEPFKGLLLGLFFLAVGMSVNVEEALDYWPYVLAGVVALLSLKALVLYGIARLMGLPHYHRLLYA
LVLAQGGEFSFVIFNEAWDNHLMSLEQRDLLAIVVAISMGAVPIVIRLLERLPGRYGGIGDMAVTPVGFAGSPPPQSAAD
NEERSGPG
>SEQF1086_CAE42728.1 alcaligin biosynthesis enzyme [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNREIYDFVAIGIGPFNLSLASLSAPLRGVRTLFLDKKSGFDWHPGMLIETSTLQNPFLADLVSLADPRSEYSYLNYCKL
TNRIYSYYMRENHYLSRAEYTRYCQWVAARLPNLRFGCDVQGVLHDPESHSYLVTGQHTMSGQRFMFRCRKLVLGLGSQP
YLPACCDRRAAPFIHSADYLRHKYELQGRASITIVGSGQSAAEVFHDLLRESGRHDYSLAWITRSPRFFQMENTKLTLEL
ISPDYTEYFHDLPEARRQEILTQQNSLYKGINASLINQIYDLLDEKVHDGDNRYTLLTNSELRACRYDPLQERFQLDFQH
LDCDRPFSHATDGLVLATGYSHEIPACINPIHDRIAWNADGSYRIGRNYAIDHEGSEIFVQNTGLLSHGVTNPDLGFCCY
RNSQILRELTGTEHYRIETRTALQEFSPPADGVLKHRPARRAERRPTVAARPLMDIHRATL
>SEQF1086_CAE42729.1 alcaligin biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMTMMATFLDVIDQKARSHYDEGKGLALRSLDPEADAAQLQQWFSMDYARFWSMQDSSVHQVRDFYTALCSSGHAGAWLG
LHHGRAAFLVECYDPARDQVGEHYCVRPGDLGMHLLIAPPTEHIPGFSRAVFALVMRFMFDRLHAARVVVEPDVNNTKIH
ALNLSMGFVYAGLARFREKTASLAFCTRAQFEQAQRQELTQ
>SEQF1086_CAE42730.1 alcaligin biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRTTPPHPAEIVAHLQPEIWNKVNRLLVRKAISEYAHEWLLEPQRLGSGETPGFERFRLTLADGAQYDFDAQVMAMRHW
RIPPESIVKTVAGVPAPLDALQFVIEIRDKLGLPVDRLPIYMDEITSTLHGSAYKHGRTTLGAAALARADYQTIETSMIE
GHPSFVANNGRLGFDAEDYHGYAPEAATPVRLMWLAVHKDNAHFSCLSDMDYDSLMSEELGESAVTDFAARLREQGLHPA
DYYFMPAHPWQWFNKLSLAFAPYVAQRKIVCLGYGEEQYLAQQSIRTFFNISRPGKRYVKTSLSILNMGFMRGLSPYYMA
GTPAINEYIHDLISADPWLRANGFRILREVASMGFRNYYYEAAIDTDTPYKKMFSALWRENPLTLIAPGQNLMTMAALLH
VDPQGRALLPELIQASGLDAGTWLERYVDAYLTPLIHCFYAHDLVFMPHGENVILVIQDGVPVRAFMKDIAEESSILNPQ
VRLPQAAQRLAADVPEAYKLLTIFVDVFEGYFRHLTQILVETELMPEHDFWRLVAGRIAAYQQAHPQRLDKYRRYDLFAP
DMIHSCLNRLQLANNLQMVNLADPIGSFQMAPNLPNPIACFRPSWLGSGEALQTLTAA
>SEQF1086_CAE42731.1 hypothetical protein BP2459 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSWDIAAQTGAGVAQDINRTACSDLDALLALAGSLVPGLDGRIGPVSGDIRPGADNRATLRTLQDWWRLRHPEAGSHYLA
LRCWGLLIWQPIYLGVIAVHCSDIAPDLDRLGQPVRDGFIAGYILERHEPLRGCLEQRKQAVAAQLRRICATYFRELSQL
LRLSPRAAACMQADCVLSALLAARANEDKAAVAWAHEQAADWLDRLGIAGHSGYLVYARAGRPVLALDRQVCCHHFRRHD
GDYCSTCPKLPPAERIARIEADEAAA
>SEQF1086_CAE42732.1 putative iron-sulfur protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDIASLAQLQQALSPLHARAYFDEALFVREQEILFRQSALYVGHEKSVPEPGDWRRLPQDDGSRILVRNGNEVALLSNV
CRHRQAVMLGPIAGGEAMKGNLSVTGGNIVCPLHRWTYDGQGRILGAPHFPSTPCLNLSRFPLHNCHGLLFEGPRDPLKD
LDVLFRRPEFDFSDYVLDHVEVHRCNYNWKTFIEVYLEDYHVGPFHPGLGRFVTCADLSWEFGAQYSLQKVGVHDSLEQP
GTEVYRGWHDNLMRYRGGRTPDFGAIWVTYFPTHMIELYPHVLVLSTLYPKGPQETLNIAEFYYPEEIALFERDFVQAQR
AAYMETAVEDDEIGERMDAGRLALLRRGVSDSGPYQSPMEDGMLHFHEWYLSNMGEQLGDSAAPHVASTQRPMPFRS
>SEQF1086_CAE42733.1 Transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQPTLPPPPRTRFTVSDFNRMGGSVGFNYRLPGQEGGGAGIENLCIAEGRVEECEIRPGITLIVSDVHVYHHYESTSVM
TPRFSAIVMLQGQARARLDKQDDVRLAAQSGLNALYGDTVAMTGVHPAGQRLRSVNLSVTAPEAADDEYTSEIIWKLMQS
SAPRLRRWPVPHHLLLSIEHLLECDWDQPLRNMVREGVGTQLLAHALAALQHAPVTHRGLTQRDRQLLERVRERLHEAPG
EDHTLDDLARLACMSPSTLRAKFHAVYHRSVFSWLRERRLEVAREQLARGWSVQQAAHFVGYRHATNFATAFRERYGVAP
SQLG
>SEQF1086_CAE42734.1 putative drug resistance translocase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRAASAPSYSLMMVMLGLLSCVAPASIDAYLPAFGALQREFGVPQETVQLTLGVYMFCYAAMLLLHGTLSDSLGRRRVV
LGALGFYVWGALLATAAPGFGWLLAARALQGLSAGAGVVVGQAIIRDCYQGAAAQRSMSYLILVFNLSPALAPVIGGQLA
VHHGWRSIFFMLGLLAATALTLCAWRLPETLAPAKRQTLSLRGLAAGYREVLRNGNFTAPGLAFSLVFAAQGLLIGAAPD
FIANVLDLPETNFAYLFVPLVAGAMTGAAIAARHAGRWRDTRIIGLAYLLMNGSCLAYAIYFWTALSPALPWAVLPPALF
TCGLAMSVPAMTLHILESVPALSGTGASVLGFMQMLAFSIASGWGVPLTYGQPSVLALAMLACVTASALAWAWLQHLSRI
SAKVQAR
>SEQF1086_CAE42735.1 ferric alcaligin siderophore receptor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPDPAHFSPAHSRRLRFFAHVLHLLGALFTQHALAQEARTGNDIAQLPAISVTGREISDLTEGTNAYTTEAMSTATGLTL
SPRETPQSVSVVTRQQIEDQGLTDTGAILATAPGISVTRSDSNRYSFSARGFTIDNFQFDGLVSPILSQWNYGSTDMDAA
IYDHVEIVRGATGLMTGSGNPSAAVNFVRKRPLREFAATFNASVGSWDYVRGDADISVPITEDGRIRSRLVAAYSQGDSY
VHFLDTRRRTFYGVVSADLTPDTVLTTSVEYQHNHSNGFGSGFPLFYSDGSRTDFNRSVANNAPWARQDTEATTYFVDLT
HRFTNDWKLRAAYSHTDGRYLMKHVYRGGYPDRHTGIIAAPPAFSNYDGNLDRDDIHFSLSAPFEAFGLRHEVALGWMSI
DNHSDIQRYAMVGPAPAIGSFFDWRRAHIQEPSWADTLSPADDVRTKQTGAYLVGRFALAEPLHLIVGDRWSDWKTKQMY
FGSRREYRIKNQFTPYAGLTYDINDTYTAYASYTEIFQPQNARDTSGGILPPIKSKSYELGLKAAYLEGRLNTSAALFQT
RQDNLAQVIPGSSIPGFPNMQASRAASGAKVEGIDLEASGQILPDWNIGASYTHFTTKDASGNPINTNHPRSLFKLYTTY
RLPGALHRLTVGGGVDWQSRMYQAAASPRGNVEVEQDSYALVSLMARFDFNKKLSATLNVNNLFDKKYYDQIGFYSQGWW
GAPRNVMLNLRAQY
>SEQF1086_CAE42736.1 possible membrane efflux protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGNFVSEILFGYTTLISIINPLGLAFVFLNKTATLTPEERARLAYSVALNAMFLLLVTFFIGAYILHLFGISLEALRVAG
GLSVAVSGWAMLNAPEPHPQAQALQQITPSMAREMVFFPLTMPLTTGPGTVAATIALSANRTNELRDFLLASLASVLITM
AVAATVYLAYSRAGTLARYLGADGTRIVTRVSAFLLLCVGVQIMLTGLEQFLRPIIGHG
>SEQF1086_CAE42737.1 hypothetical protein BP2465 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTGRPPLIMNDQRKSSRASCRASANYLRAEAALPRRRYPQPPVSGAATLQELQAQVDTLELENARLRRLALTDDLTGAYN
RRYFATMLRDALRERVRGGGLALCLFDIDNFKTINDRHGHFAGDYLLRRVALAARRCMRRTSDDLCRVGGDEFAAVLSAP
SASAALAQAQRVLDAIRAIAPLDTPHGPRHVTATFGLAWIAPGVSLTWEQAYSDADRALYRAKQAGKNRLHLIASRTAGA
>SEQF1086_CAE42738.1 hypothetical protein BP2466 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MENDPLAIIHIHEDGGATLMGTDYRVEPEGVASMIRQGERFFWIEPPVISQEG
>SEQF1086_CAE42739.1 hypothetical protein BP2467 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTPGPRTSPLVFASASIQAIKAGKQRQTRRIVKPQPPPAATLWYCDPAHAERWIAATARPDDATPAQTVSKWLVCPYGKP
GDLIDLAHESGQPFGRAILMGVRIQRLQAINEADAAAEGFAAASRLDEFLPETPPQAAFALAWCERYGARAWAANPWVWV
LEFRLLNQNGH
>SEQF1086_CAE42740.1 Virulence protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKKWFVAAGIGAAGLMLSSAALARVDIGVSIGIPGVVYPAPVYVAPAPVYAPPPVVHYPAPVYVRPQVVYPAPVYYGGPR
YYKGHRHYDRGHRGHRGHGRGHWRD
>SEQF1086_CAE42741.1 hypothetical protein BP2469 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNKCVPAINRAISTAKYRLATRPLHFNKGSCFMTSRMIGDFRVRCTVVQEEGNQYSVQICTRRVGGNAPEKCWTVPGQVS
YQDREDAERTSQQIFERINGVRFNGEPEFAHASA
>SEQF1086_CAE42742.1 seryl-tRNA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLDPILLRKDLQTVVDRLKSRGVDFDIARFNELESRRKAVQTETESQQARRNALAKQIGQLKGKGAPEAEVQAVMAESQA
LPARLKALEDELAQTQAQLNDLLMSVPNLPHASVPQGASSDENVEVRRWLPGAADERGIPAALGFEVRDHVAVGEPLGLD
FDLAARLSGARFSFMRGQMARLHRALAQFMLDLQTGTHGYTECYTPYIVNSSTLFGTGQLPKFKDDMFFVTKGGGDDEPK
VDEQGNPLAREDQYLISTSEITLTSVVRETIVAGADLPLRLTAHTPCFRSEAGSGGRDTRGMIRQHQFDKVEMVQIAHPE
HSYEALEEMVGHAERVLQLLELPYRVMLLCTGDMGFGSAKTYDLEVWLPAQDTWREISSVSNCETFQARRMQARFRNAQN
KPEYVHTLNGSGLAVGRALVAVLENCQQADGSVRVPAVLQPYMGGLTVLEP
>SEQF1086_CAE42743.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNDLFASDPAHRPYVPLAERLRPRTLSDVVGQSHLLGPDKPLRVAFDSGRPHSMIFWGPPGVGKTTLARLMADGFDAQF
IAISAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRAR
VYVLQSLSAEELMQLVDRAVAALNEGLEDGQQIRFEAEAREQLAAWADGDARRLISAVEVVAESAQAAGRDSVDAAWLET
SLSQNLRRFDKGGDAFYDQISALHKSVRGSDPDAALYWLARMLDGGADPKYLARRLVRMAIEDIGLADPRATELAVNGAD
IYERLGSPEGELALAQAVVYMACAAKSNAVYNAYNAARKFAAEHGSAPVPLHLRNAPTKLMKQLGHGKAYRYAHDQPHAY
AADEQYFPDGLNPTFYRPTDRGLEAKIQQKLAFLDELDAQERARKR
>SEQF1086_CAE42744.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHMIRRAAGALAVFAVAALAAAPAWAATAQEQLDTFVATVKGATGSFKQSTVSPQGATQPAQSGTFAFQRPGKFKWAVQL
PYEQLIVSDGKQVFQYDPDLAQVTVRQVDQAIGTSPAAILFGAGQLSQAFAVSALPDRDGLQWLRAKPRNADAGFSQVDI
GLRDNQPARIELVDAFGQTTRVELSNLLPGAVPASEFQFTPPQGVDVVKM
>SEQF1086_CAE42745.1 putative cell division protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRMPRISNATPRASRNTRNGPSPFQARISALLREARWILFAALAAWLTLVLATWSPADPGWSHSVSGDAIHNGGGTLGA
YLADILLYLFGFSAWWWVVLLLHRVRAGYRRLASNLRVTSGKQPDALPRVHWEEGIGFVLLLTGSLGIEALRLYSWGMHL
PGGTDGESGAGGVIGQMLAGWLSRGVGFTGGTLALLVLLAVGLSLFFSFSWLQIAERVGSWLEGLVRRVRDSYAAREDRK
VGEVAKAVRTEQVVAKQEKLVHEQPVRIEPAITVVPRSDRAEKEKQQSLFAPPAGESDLPAIGLLDPPLQNQETVSAETI
EFTSRLIEKKLADFGVSVVVVAAQAGPVITRYEIEPATGVKGSQIVNLAKDLARALSLVSIRVVETIPGKNLMGLELPNP
RRQMVKLSEILGSQTYHASHSVLTMALGKDIAGNPVVADLAKMPHLLVAGTTGSGKSVGINAMILSLLYKADASHTRLIL
IDPKMLEMSVYEGIPHLLAPVVTDMRHAANALNWCVGEMEKRYRLMSKMGVRNLAGYNSKIRDAIKREEPIPNPFSLTPD
APEPLQALPHIVVVIDELADLMMVVGKKIEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFQVSSKID
SRTILDQMGAETLLGQGDMLYMPPGTGLPVRVHGAFVHDDEVHRVVEALKAQGEPNYIDGLLEGSEGETGDGLSSVTGMG
DAESDPMYDQACEVVLKHRRASISLVQRHLRIGYNRAARLLEQMEQAGMVSPMQSNGNREILVPAREEA
>SEQF1086_CAE42746.1 thioredoxin reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTPKHAKVLILGSGPAGYTAAVYAARANLSPALITGLAQGGQLMTTTEVDNWPADVQGVQGPDLMQRFLQHAERFNTEI
LFDHIAKVDLSRRPFTLTGDTGNLYTCDALIIATGASAKYLGLASEQAFMGRGVSGCATCDGFFYRNKDVVVIGGGNTAV
EEALYLSNICRKVTLIHRRDKFRAEPILVDKLMDKVANGNMELKLFHTLDEVLGDDSGVTGVRIRSTETDATEDLDVDGC
FVAIGHQPNTGIFEGQLEMKDGYIITKSGLSGMATMTSVPGVFAAGDVQDHVYRQAITSAGTGCMAALDAQRWLENAGQ
>SEQF1086_CAE42747.1 hypothetical protein BP2475 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRGNKTGLADLKRLHEQVRETRARAEAAEREAAARASAAAPEADVAAFRRAVQAATPLKPSGRLANRRPDATPATAAAVA
SRRAAALGEAAPRADAGVSDASDIGALLTDGGTAYVRAGVAPDTARNLKRGQWRVGAELDLHGLRVEQARHAVLSFLDEC
LEHGIRCVRIVHGKGYGSQGLEPVLKDKARTWLVQKADVLAFSEAPERGGGAGALLVLLRQAEAGGRP
>SEQF1086_CAE42748.1 putative mebrane transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNSWIHLSMAIVAEIIATSALKSSEGFTRLLPSLVTVAGYAIAFYFLALTLRVIPVGVAYAIWSGVGIVLISLVGALLFK
QHLDLPAIIGIALILAGVVVMNVFSKSVGH
>SEQF1086_CAE42749.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
>SEQF1086_CAE42750.1 putative membrane transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPFTGNTPQEFEQRLRRIYTLYTLGFILLVLLLALAELMGMARSWIGYVFLLVTVSLYACIGIVCRTSDQVEYYVAGRRV
PAFYNGMATAADWMSVASFIGVAGTLYLTGYGGLAYIMGWTGGYVLVALLLAPYLRKFGQYTIPDYLGARYGGKLPRLAG
VFCAILCSFTYLVAQIYGVGIITTRLTGISFELGIFVALGGMLVCSFLGGMRAVTWTQVGQYIILVIAYLVPVVWLSVKH
TGMPVPQLSAGTVLQEITEKEVYLAHDPGERAVRQLWRSRADEMDERLRALPDSLAHEKDRLRGRLAQLNASDAPMVEIR
SLERELASYPATVEEARTLWSQARAAFEARATPPVPHAEPFPAEDPRERENMRINFLALVLCLMLGTAGMPHILMRSYTT
PSVGEARRSVCWSLLFILLLYFMAPALALLVKYEVYTQVVGTSFLSLPSWVHAWSAVDIHLLDVLDVNRDGIVQLGEISM
GADVVVLAMPEIGGLPYVVSGLVAAGGLAAALSTADGLLLTLSNSLSHDTWYRVVSPRMSAGRRVMVSKILLLLVAFGAA
WVAARKPADILFMVSAAFSFAASSFFPALVMGVFWRRANKWGATLGMFAGLAATFAYMAHTHPWLREWVFGVTRAEPVDL
WWGIQPVAAGVFGAPMAFLTIIVVSLLTPRPDSATEALVDYLREPGGR
>SEQF1086_CAE42751.1 putative integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPESRVKSEPSPAPYWRRNVRLIVLLLACWAGLTFVPAYFARQLAFDFIGWPFSFWMAAYGAPLAYLILIVIYALVMNRF
DARSRTRRDD
>SEQF1086_CAE42752.1 potassium-transporting ATPase A chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNADFLGLLLLYLAILLCAAPLLGRHIRQAINGERTWLTAWGQPLERGLYRLAGVDPAAEMDWRRYAVAMLVFNVLGVLA
VYALQRLQGWLPLNPAGLPGVAPDSALNTAISFVTNTNWQGYAGESTMSYLTQMLALTVQNFVSAATGIAVLIALVRGLA
RHSAATLGNFWADLVRATLYVLLPLSFILALALVSQGVVQNLDPYVEAQTVQAQQYETARLDAQGQPMTGPAGQPLTDTV
VTRVQTLPMGPVASQEAIKLLGTNGGGFFNANSAHPYENPNAWSNLLEMLAILLIPAALCWTFGEMVGSRRQGVAILAAM
TVLFAGFAASAAYFEQQPTPALRQAEAALLADGGNLEGKEARFGVAATALFATVTTAASCGAVNGMHDSFSALGGVTPLL
QMQLGEVIYGGVGSGLYGMLAFAILAVFIAGLMIGRTPEYLGKKIEALDMQMVALVILATPALVLAGTAVAVLADAGRAG
VLNPGAHGFSEILYAMSSAANNNGSAFAGLSANTPFYNVLLGLAMWFGRYTIIVAILALAGSLAAKPRLPASVGGMPTTG
PLFVALLVGAVLLVGALTYVPALALGPVAEHLQP
>SEQF1086_CAE42753.1 potassium-transporting ATPase B chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MANSPTPLSAQAGLPAASPSLPAATPHRAFGLWSRALAGPALRDTLRKLSPAAQLRNPVMFVVYAGSILTTLLWLLALAG
LAEAPAGFILAVAAGLWFTVLFANFAEALAEGRGRQQAAALRGLRTTIEARVLTGFRDSDAAAALPPYWRSRATSRPSGA
LRRDDVVLIEAGETVPGDGQVIAGIASVDKSAITGESAPVIRAAGSDFCSVTGGTRVLSDWIFVRIAADPGDSFLDRMIA
MVESARRQKTPNELALTILLVGLTLVFLLVVASLLPFSMYAVSASGAGQAVSITVLVALLVCLIPTTIGGLLSAIGVAGM
SRMMRANVIATSGRAIEAAGDVSVLLLDKTGTITFGNRQAAAFVPAPGVSPAVLAEAARLASLADETPEGRSIVALAERI
LDTRSEAPAGARFVPFSAQSRMSGVDLDGRLIRKGAADALARWLGEGQGGLPAAVARDVDDVARRGSTPLVVAEGGQALG
VIELKDIVKPGIQPRFAALRRMGIKTVMITGDNALTAAAIAAEAGVDDFLAEATPQAKLELIRACQADGHLVAMTGDGTN
DAPALAQADVAVAMNSGTQAAKEAGNMVDLDSNPTKLIEIVEIGKQMLMTRGALTTFSVANDVAKYFAIIPAAFMAVYPQ
LAQLNVMGLATPASAILSAVIFNALIIVALIPLALKGVRYRPLGAAVLLRRNLLVYGLGGLLAPFAGIKLIDMALAALGW
T
>SEQF1086_CAE42754.1 potassium-transporting ATPase C chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTMHPPLPPAGRPLRAALVIFLALSVLVGLLYPLATTGVARLLWPFQAGGSLLEQDGRVVGSALIGQSFTDPRYFWGRPS
AIAPMPYNAAASGGSNLGPANPALAQAVRARIAALRAADPGNPAPIPVDLATASGSGLDPHISPAAAGYQAARVARARGL
PTATVEQLIARHTERPVPDILGEPVVNVLALNLALDRLR
>SEQF1086_CAE42755.1 Two component sensor protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADPGNDRLDPDRLLQTLEQAQSDARRGRLRIYFGACAGVGKTYAMLAAARAQAAQGVDVVAGLVETHGRADTAALLDTL
PALPLQTLDFQGRRLREFDLQATVARRPRLLLLDELAHTNAPGARHAKRWQDVEELLAAGIDVWTTLNVQHLESLNEAVG
GITGVRVRETVPDSVFDAADEIILVDLSADELLRRLREGRVYVPEQARHASRHFFRKGNLIALRELALRRTAEHVDDDVR
AYRHERAIEPVWRTREAVVACIDADPHAEHVLRSAHRLAQQLDCEWHAITIEAPRVAPLPRAGRARLDQALALAETLGAH
VETVAGTDMVDAATRYMRRHNITKAVVGRDAWRRRGLSGLLDAALTPGRLLRRRSFADVLASACPEADIVRVGAPSAATA
APRRDPRSWRNASAPAGHAAAGAYLWALAYCAAATLASRLAFPVLHQTNIVMIFLLAVVAAALRHGRGPAALASVVSVAL
FDFFFVQPLASFAVSDVQYLLTFAVLLTVGLLIGQLTAGLRQQARAAARREADARGLYEFARELSAALQPEQIAGAASAF
LNAAFGARGALYILGLDDRLRLAPGAGDAALEPTLAQWAFDHGQACGAGTDTLSNSPVLYLPLRAPMRVRGVLALHHAGP
PLYSAAPARRQLDAYATLIAIAIERLHYVEVAQQALLSIESERLRNALLAAVSHDLRTPLTSLLGMAETLQRSPAAMTPA
ALETVAAMQDQARRMHALVVNLLDMARLQSHDAPLRRQWQSVEELVGSALAAMNAALQDRPVTVAPLSALPLVKCDGILI
ERVLCNLLENAAKYTPPGSAIHIDALADAHTLQVRVADDGAGVAQADRQRIFEKFARGQRESAPPPAQASGWRYAAPSWT
PTRAASGSSRPGACAAPASSSRCR
>SEQF1086_CAE42756.1 two component system transcriptional regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPDYRPTVLIVEDDAHIRRFVRSALEAEGCEVHETDTVRRGLIEAGTRQPDAVVLDLGLPDEDGMALLRELRGWTELPVL
VLSARSSEGDKIAALDAGADDYLTKPFGVGELLARLRVLLRRHARGGAGNAAQAGFGDVQIDLARRVVTRAGEHVHLTQI
EYRLLAALVASRGKVMTHRELLREVWGPSHVESHHYLRIYMGHLRQKLEADPARPRYLLTEIGVGYRYAGE
>SEQF1086_CAE42757.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWQRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE42758.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPVVQLKIFAVLALLIPALALVSKGGGVAVFYTLAVLTSLAIMVYAGRGRAQPSWRDLAWPGAVLAVPLLSMLVTNAYLG
IWSGSEFEKLLRFALALPLFWVLLCVPRPWLQQIQWSLLFSAYAGAIMLYVIVGWYGGRMQVSFYGAEYNAVAFANLTLF
FGFASLLTLGWRLTPWPGLEALLKVGAACAAVYAAHVSETRSSWMLLPVFGLVFLMSRRVWSLRRKLAVGLVLVAALAVL
AGVMLSSQGNRMHKILTDLQRYTVQNDRNTSVGIRLQLWHASWMIFQEAPVLGVGPRNFRAELAKLRDQGVVTPEVASGY
GEPHNDFMAAMAGYGLLGLLSILLLYLAPAWVFLRRMASDDRVIRTGAQIGLLFCLGYCAFSLTEMMFRNMRSVPIYSAT
LVLLLALTAPRAA
>SEQF1086_CAE42759.1 hypothetical protein BP2487 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARTIENMAKPASDMPPYDKAAALRGLAGARRVALLMAPRLGDTLLMMNMARNLAAHGREVSIFGDYIHGLRDWFPGLDI
RPSLSEEQAGQVLPGYDCAAQMHVGWPYALHAHQPNYFYYDAHVAITGRGFVKLFQIRDFCREQLGLAQAGADNGLRPPP
QVQPHRSHPRRVALHPTSTGAQRCWAPRHFKELGLRLLHEGYEPNYIVAPHERAEWSWVLDHGLHLPQFPSLSEVAGFIH
ASGWFIGNESGIGHLASNVGVPTLSLTGRPTRTRAWRPAWSTSRIVYPALIPGGRWRDRLWREWLSPRRVMSAFHKLQAD
DRRQPVGVPWGKI
>SEQF1086_CAE42760.1 isocitrate dehydrogenase [NADP] [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSYQHIKVPTGGQKITVNADYSLNVPDQVIIPVIEGDGTGADITPVMIKVVDAAVQKAYAGKRKIHWMEVYAGEKATKVY
GPDVWLPEETLDAVKDYVVSIKGPLTTPVGGGIRSLNVALRQQLDLYVCLRPVRYFKGVPSPVREPEKTDMVIFRENSED
IYAGIEYMAESEQAKDLIQYLQTKLGVTKIRFPNTSSIGIKPVSREGTERLVRKALQYAIDNDRASVTLVHKGNIMKFTE
GGFRDWGYALAQNEFGAQPIDGGPWCKFKNPKTGREIIVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVG
GIGIAPGANLSDSVAMFEATHGTAPKYAGKDYVNPGSEILSAEMMLRHMGWTEAADLIIASMEKSILSKKVTYDFARLLE
GATQVSCSGFGQVMIDNM
>SEQF1086_CAE42761.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFNPSRDQVREFFIETWRKHRATEVLTPLESMALDWILEHPEYHGDLESPEAMTAEYPVEHGRTNPFLHLSMHLAIAEQL
SIDHPRGIRAAYQRLVGRGDAHQAAHEIMECLGQVVWEAQRLGTPLDSDAYIELIRQRAER
>SEQF1086_CAE42762.1 putative cytochrome [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRFTFALAGIVLATAGVSAQAQDVVAGKAVFDKFNCASCHGADAKTSVQPEYPVLAGQHADYLAHALKAYKRGAAGSAA
TANVRKNPIMGAFAAQLSDQDIRNVAAWLAAQPSDLGVRQ
>SEQF1086_CAE42763.1 putative cytochrome [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRTVSVLAVLASCAIAGPAAAADAAPVGNAQNARDKVSMCIGCHGIPGYKASFPELYHVPMIAGQNAKYIEAALNEYRK
GARSHPTMDAVAGSLSDQDIADLAAYYSSLK
>SEQF1086_CAE42764.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE42765.1 putative ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPTSASSSSAPAQSARFEGTDRYVATDDLKLAVNAALTLQRPLLIKGEPGTGKTMLAEEVARALDRPLLQWHIKSTTKAH
QGLYEYDAVSRLRDSQLGDEKVRDIRNYIVQGTLWQAFEAPEPVVLLIDEIDKADIEFPNDLLRELDRMEFHVYETRQTV
QARHRPLVIITSNNEKDLPDAFLRRCFFHYIRFPDRDTMRDIVGVHYPDIRQDVLRAALDTFFALREAPGLKKKPSTSEL
LDWLRLLLAEAIPAAEIDAHAATAVPVLAGALLKNEQDVHLLERLGAMARGAQRR
>SEQF1086_CAE42766.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLIDFFYHLRAHKLPVSVQEYLTLLEALRQRLMAPTLDDFYFLARTALVKDESLYDRYDAAFGAYYRGIAAALPADRDIP
LDWLIKEFEKTLTPEEKAAIEAHGWDKLMELFKQRLEEQQERHAGGSKWIGTGGTSPFGNGGYHPEGIRVGGDSAGNRTA
VKVWDMRQFRDYDDQLELGTRNFKVALRRLRRFARQGADLELDLDDTIASTARNAGHLDLRLVPERRNTVKVLMLLNVGG
SMDDHIARVEELFSAARSEFRHLDVYYFHNCPYENLWQNNRRRQNERFETWDVLRKYNADWRLIIVGDATMSPYKILQPG
GSVEHYNKEAGAVWLRRLLDAWPKAAWLNPEPTASWRYRQSIALLRDIMQDRMYPVTVAGLEQAMRQLSK
>SEQF1086_CAE42767.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNATPSPAPLVDCTHDRHAAAILDIFNDAILTSTALYDYQPRALASMEAWFQAKRQGGFPVVGFEDAAGVLMGFASYGTF
RAWPAYKYSVEHSVYVDRRYRGRGLGEALLRALIERARLQQVHVLVGGIDATNAGSVALHRKLGFVHAGTITQAGFKFGR
WLDLAFYQLTLDTSLRPVDG
>SEQF1086_CAE42768.1 hypothetical protein BP2496 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLTDIVTRALSQLLGNSLSGDVIKGRFRYAYASDDGRFVAILGHDLTTYVVDVDAQRYFAECAGVPCGFAGHVLEMEGAQ
EHGHPWPAVNDLFDLDMDGDEIAWRRCPGAVALAATRQAQSRVA
>SEQF1086_CAE42769.1 putative zinc protease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRLPLLSRRLNALLVSSFLAFQAGAASLPAGVSEVSSIEGITEYRLANGLRVLLAPDASKPTTTVNMTYLVGSRNENYGQ
TGMAHLLEHMLFKGTPAIRNALGEFSRRGLQANGSTSSDRTNYFASFAANPETLKWYLGWQADAMVNSLIAKEDLDSEMT
VVRNEMESGENNPFRVLMQKMQAAAYQWHNYGKSTIGARSDVENVDIAQLRAFYHEYYQPDNAVLIVAGKFDPQTALADI
QSSLGKLPKPKRTLPPEYTVEPVQDGERSVTLRRAGGTPLVAAMYHLPAAGSPDFVGLDLAATILADTPSSRLYHALVPT
KLASGVFGFTMDQLDPGLAMFGAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVAL
SEAIASGDWRLFFLQRDRVREAKLDDVQRAAVAYLVRSNRTEGRYIPTEKPQRAPLAQRADLAAVFKDYKGDPNFKAVEA
FDPSPANIDKRTLRRTLDLPNGQVELALLPKATRGDRVQAELLIQFGDAEALRGQRVPLAAAAALLDRGTDKLSRQAIQD
RLDQLQAEATINGSGTNLVVNISTLGKNLPDVMALVLDVVRNASFPQDQVEEYKRQAITMVQDAMTDPTALASRALARHN
NPWPADDVRYVPTFDEALEQLRSLSRDDLAAVSGKLYGAGRIKFSAVGEFDPAAVEAVLRKGLDGWRSAPAYTRLPDPYR
AVPAQQFDIATPDKANAFYISRMPLQLQDTNADYPALYLANFLLGTSETSRLWHRVRETEGLSYNVRSNLSVSSYEPSAN
WTIYAIYAPQNRARLEKAISEELARALKDGFTDQEVRDGVVALLNYRNLARAQDDVLADTWVNYMQTGRSFQWSADMDRK
LEALTPDQVNAALRKYLKPEAFSTAVAGDFTKKSTP
>SEQF1086_CAE42770.1 molecular chaperone [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAKRDYYEVLGVAKNASDEDLKKAYRKLAMKYHPDRNPDSKEAEEKFKEAKEAYEVLGDEQKRAAYDRYGHAGVDPNAAG
MGGGMGGGMGGGMGGGMGGGFADAFGDIFGEIFGAGRRGGGGPQVYRGADLKYALEITLEQAASGFDTEIRVPSWENCDT
CHGSGAKAGTSPKTCRTCGGSGAVRMQQGFFSVQQTCPTCHGTGKEITDPCPSCDGVGRTRRNKTLQVKIPAGIDDGMRI
RSSGNGEPGINGGPPGDLYVEIHIKQHKIFQRDGDDLHCELTIPFTTAALGGELQVPTLGGKAEISIPEGTQSGKTFRLR
AKGIRGVRGSYPGDLYCHVVVETPVRLSDEQKAILRQFEASLNDGGDRHSPQSKSWTDRVKEFFS
>SEQF1086_CAE42771.1 molecular chaperone [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKIIGIDLGTTNSCVAVLDGGQVKIIENAEGARTTPSIVAYMDDGETLVGAPAKRQAVANPKNTLYAVKRLIGRKFDEK
AVQKDIDLMPYSIVKADNGDAWVEVRGKKLAPPQVSAEVLRKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRI
AGLEVKRIINEPTAAALAFGLDKTEKGDRKIVVYDLGGGTFDVSIIEIADVDGEMQFEVLSTNGDTFLGGEDFDQRIIDY
IISEFKKEQGVDLSKDVLALQRLKEAAEKAKIELSSSQQTEINLPYITADASGPKHLNLKITRAKLEALVEELIERTIEP
CRVAIKDAGVKVSDIDDVILVGGMTRMPKVQDKVKEFFGREPRKDVNPDEAVAAGAAIQGSVLSGERKDVLLLDVTPLSL
GIETLGGVMTKMIQKNTTIPTRYSQTFSTADDNQPAVTIKVFQGEREIAAGNKGLGEFNLEGIPPAPRGLPQIEVTFDID
ANGILHVSAKDKGTGKENKITIKANSGLSEDEIQRMVKDAEANAEEDHRLAELAQARNQADALVHATRKSLTEYGEKLEA
AEKESIEAAIKDLEDILKTGDKAEIDAKVEALSTASQKLGEKMYADMQAQQQAQQQQAADNAKPVDDNVVDADFKEVKRD
Q
>SEQF1086_CAE42772.1 putative thioredoxin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAAPFDPAEVFQVFGMRRVDSASFDEQVVRAPGDDLRCVFLWGQDCYNCGIFKQTALLQRQALLALELSWFEADVYADE
ALGRRFSLHGVPTFVLYRSGKRLGRVTGWPGLPQFSAAMQRLRDGT
>SEQF1086_CAE42773.1 putative GrpE chaperone [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAPQEPVDSTPESGENAATPGLEDDLSAELAALRAELEAAQATVKAQQEQVLRAAAEAENVRRRAQEDVAKARKFGIES
FAESLVPVKDSLEAALAQPDQAAQAWREGVEVTLKQLTAAFERNLLKEIAPAQGDKFDPHLHQAISSVPADQPANTVLQL
LQKGYVIADRTLRPALVVVSAGQG
>SEQF1086_CAE42774.1 hypothetical protein BP2502 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNPPRKPTIGTSGPPGHANLEEDQLERELDEALLETFPASDPIAITSEDERDEPDDKVDEALEDTFPASDPPAPAQPGKK
>SEQF1086_CAE42775.1 ferrochelatase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRGVFVFLRLFKYLWPERYLPETPAQDPFDENPPPCGPGRVGVLLVNLGTPDEPTRGAIRRYLGEFLSDPRVIEIPRYLW
MPILHGLVLTMRPKKLAPRYAGIWMEEGSPLLVYSQRQAAGVRQGLAARGVHAEVELAMRYGKPSIPAAITALRERGCDH
ILAVPLYPQYAASTTATVVDAVTRHAGRLRDQPALRFVKRFHNDPAYVEAQAGRIAEFWQAHGRPQKLVMSFHGLPRYSI
ELGDPYYRDCLDTARLLRERLGLREDEVEVTFQSRFGSARWLEPYTEPTLAELARQGVTEVDVVCPGFVADCLETLEEIS
QECRDAFVAAGGRQFRYIPALNDCPPWIEGLTDLVERQLRGWPTGNP
>SEQF1086_CAE42776.1 heat-inducible transcription repressor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDDRARALLKALIERYIADGQPVGSRTLSKVFDLSPATIRNVMADLEELGLIHSPHTSAGRVPTPRGYRMFVDSLLAVRA
YQFEPAHIGELLPVSEPSRAVNAAAALLSNLTQFAGVVLTPKRTQIFRQIEFIRLSDKRVLLIIVTPEGDVQNRILSAQR
DYTEAELLEAGNFFNVHFSGKSFDAVRRTLSTELAQLRDDISRLMQAAVEAGAEAADDGEAVVISGERKLLDVTDIASDM
DRLRKMFSLFEKKTDLLQLLDVSSRAQGVQIYIGGDSQLVPMEEVSVITAPYGVDGKVIGTLGVIGPTRMAYERVIPIVD
ITARLLSNALSHNQ
>SEQF1086_CAE42777.1 probable inorganic polyphosphate/ATP-NAD kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYFPIVALIGRYQDTGLDAPLTALAQMLTQAGRRVLVEAETARNAGVSGYPVADWDEIGRTATLAVVMGGDGTVLGAARH
LAPYGVPLIGINHGRLGFITDIPLQDAHDALGRVLEGNYQAEDRMLLQGGVWRGEQQMYSASAVNDVVLNRAGRGGMIEV
RVELDGAFMYTQRADGLIIATPTGSTAYSLSANGPILHPGMNAMVLVPVAPQTLSNRPIVIPDSGVLNMTLTAMGRVEIG
ASVHFDMQTWSDLQPGDRITVQRAPHIIRFVHPEGYSFFSTLRRKLHWNLMPQATDNLE
>SEQF1086_CAE42778.1 DNA repair protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLRTLHIRDFVIVEQTELHFGDGFTVFSGETGAGKSILIDALALTLGERGDASMLREGAARADITAVFDAPPALRDWLAE
RELDSGDELALRRVIDSQGRSRAYINGMPATIAQLRELGDGLVDIHGQHAHQSLMRPEAQRDLLDAHGGHAELRQTVAQA
WKQWRALARQLDTAEQDAEALAAERDRLQWQSDELDRLGLGPDEWDALQTEHTRLSHAQSLLDGASRILEALDGEHDSAQ
HRLNGAAHQLQQMLRHDPALQGIGDELESARIAITEAVSDLNNYVSRVELDPQRLADVEARLSAVFETARKFKCEPHDLP
ALRDSLHGKLAEMQAASDVQALRAQAEAAQARYEAAAARLSAARRKIAKDLGKQVTQAMQTLSMQGGRFEAALTGGAPSA
HGSEQVEFLVAGHAGSTPRPLAKVASGGELSRISLALSVIASRAARVPTLIFDEVDSGVGGAVAEAVGKLLRELGQRHQV
LCVTHLPQVAACAHAQYRVSKVESGGSTRSRIAELDAEARVEEVARMLGGIKITATTRDHAREMLGGHTAPAA
>SEQF1086_CAE42779.1 ferric ion uptake regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDQSELKNMGLKATFPRLKILDIFRKSDLRHLSAEDVYRALIAENVEIGLATVYRVLTQFEQAGILTRSQFDTGKAVFE
LNDGDHHDHLICTNCGTVFEFSDPDIEKRQYKVAKDNGFVLESHAMVLYGICGNCQKGR
>SEQF1086_CAE42780.1 outer membrane lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIARISLRPLKGLAVAVLAASALTACSSGKWGFPYKAGVQQGNWITKEQVALLQQGMSREQVRFALGSPTLTSVLHADRW
DYPYYFKPGYGKAQERQFTVWFENDHLVRWSGDEQPDLQPFQIEKVNAKQEEKADAQVDTAEKRQEGIDKAEKVRPHVDV
TTPDNPTLDYPGEPGQTFEPLK
>SEQF1086_CAE42781.1 dihydrodipicolinate reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQATPQRIAIAGASGRMGQMLIEAVLDTEGVELAVALDRAGSPSIGQDAGAALGRPCGVTITDQLDALAQADCLIDFTR
PEGTLQHLQACLRHDVKMVIGTTGFDSSGRAEIKVAAQKIAIVFAPNMSVGVNATLKLLDMAARILNSGYDVEIFEAHHR
NKVDAPSGTALIMGETVASAWDVALPDVATWTRHGDTGVRKPGTIGFSVVRGGDIVGDHTVFFCGTGERIEISHRSSSRA
TYAQGAVRAARFLARQDNGLYDMQAVLGL
>SEQF1086_CAE42782.1 UDP-N-acetylenolpyruvoylglucosamine reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTVPARIEPVAPLAPQAQDLRCFNTLGLASHAPAFVALTEPSQLPALSALAPRFRQLVVLGGGSNVVLPASIDGLVAQV
RLPGVRLVGQCADAWVVEAAAGENWHGFVTACVDNGWDGLENLALIPGTVGAAPVQNIGAYGVELADRFHSLTAWDVKGG
RWVEMGAAECRFAYRDSFFKHQEPGAWVIGSVRFALPRPWQPVLDYPDLQRHAALDGAAPTARAVYDAVCAIRRAKLPDP
AVVGNAGSFFKNPLVDAGTRQALLGRFPGLVSYPQPDGRYKLAAGWLIDQCGWKGRQLGAAGVHDRQALVLVNRGGAQAR
DIMALAAAIQGDVERRYGVRLEPEPVVVPAR
>SEQF1086_CAE42783.1 putative hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPHMQLGDVQIHYDVVGDGPPLVMTTGLGTGPQSRQEMIAQLAREYSVVTYHQRGTGKSSPGPQGQAIEALADDIVALMD
HLKFERVRLIGLSTGTGKVTVVAARHPGRVEKLVLAAPWTHGDDLLDLIQHVRMAAADGMPAELYAQFNAVLLYPPRYRR
EHASRFAAAAADAAGIKTDAAGLRARLEAILRFDARPLYPLISSSTLVMAARDDLVMPAWFAQSAAASISDARLIVLGEG
GHMFPETRTEEFLSLVLPFLRRA
>SEQF1086_CAE42784.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQDTAPGQDLRIGEALADWIARRAHPIGLGTLARARWAVVDLLGCAIAGRRDASVTALTRCAKYLGTGDISALGTAYCYP
APVAALIGGTSAHVLDYDDTGATSIAHVSAVAVPAILALAEQEHRSLDTVLEAFVVGFEVTTRVGRMLNPEHYAAGWYAT
ATAGLLGATAACARLLKLDARQTLAALSIATNLAGGSRRQIGSTMKATQAGIAAKNAVLAVRLAQAGIEGSQEPFLGEGG
WLSLMAARHGPGAGAAALEGLGSDYALDAPELIQKFFPCCASAHKTLDAIAQLMASGELDARNVDRIDTWLTPVQRRNLR
FDQPVGAMQARFSLPYCAARLLHGGSLRLGDFTPQRVADPQLAGIMARVCLHVQDVPQGQAISSGTEMTAALRTRVTLCD
GTILERVVGAPKGSADNPMTQAERVAKFVDCCGYAGLAVDGGNVLARIDVMFDSNVIAPMLLRYLSGLLADAGSSHLD
>SEQF1086_CAE42785.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKSKNRKLFLSGAIGLTALLSFGRSQAADDYPTKPIRIVVSYAPGGGTDVAARIFATQLSSRIGQSVIVENRPGATGRIG
TTSVAQAAPDGYTLLFGTAAELTIASVTAKSLPYRPAEDFVPISLVGWLPNMLVASAKFPPNSVKELIAYAKARPGAVNY
GSGGNYSQPHLIGLRFNIAAGIDTVHVPYKGSGPMITDLAENQIQYSFSSPQPMVDLIGAGKLKALAVLSDKRLDSMPDL
PTMSESGLPGFVDSNWLALMAPRGTPPAVVEKLHRASVESLQAPALLESWKRLYIVPFGSSPQQLAQFIASETEKYRDLA
RKINLQPE
>SEQF1086_CAE42786.1 putative formyltetrahydrofolate deformylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKQYVLLLKCLDRPGIVHEISGGLFQEGCNIEESAQFSESGTAVFYMRVRFSAPDRACVQKIATALKRLYNGDEAGLAIH
DMDKRSRVLILVSKHGHCLNDLLFRQRSGLLNMDVAGVVSNHPDFRELAASYDIPFHHFPVTPQTRAEQEGRILDLVAST
QSDLVVLARYMQILSDRASNALSGRAINIHHSFLPGFKGARPYYQAYDRGVKLIGATAHYVTSELDEGPIIEQDVARVSH
SLEPQALTDVGRDVECMTLARAVKWHTEHRIILNGRKTIVFA
>SEQF1086_CAE42787.1 sarcosine oxidase gamma subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHFGSASAIPQVTSPAAIKLGAQGLVLTEMAVASIQLSGFGSGSALAAWMASALKVAPQPNTFVSVAEGRVDIAAIAPAT
WLMSGVAADLDSIVASARVELEEVAAITELSDGRNVFLQLEGEPAATVLSKYIDIDFEGGALAPGRCASTGIHDTAVLVI
CRRPDLFQIVVHRSLAPSLAETLVDGAAEFGVNVERLGE
>SEQF1086_CAE42788.1 sarcosine oxidase alpha subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQQYRLNHGGLVDRRRPLTFRFDGIQYQGYHGDTLASALLANGVHLVGRSFKYHRPRGIYTAGVEEMNALVDVLKEGQA
DPNTRATVVELEDGIEVSSQNRWPSLRFDVRSFHGMISRLIPAGFYYKTFMWPAKFWPKYEHMIRQAAGLGRAPLVRDRD
RYEKQHAYCDVLVVGAGPAGLAAARSACQAGLRVLLVDEKSRVGGTLPGSNTEIEGVAGAKWATAVERELRESGHASVML
RTTAFGYYDHDTVALAQQCDTPTNPHGATQRLWYVHAKQVVLAAGAIERPCVFANNDLPGVMLASAARTYCNEFGVAVGR
RVLVLANNDSAYEAALDLKRAGIDIVGVVDQREAVSASLSETLASLRIPHHRGSTIKKATGRHRVRCAVIVDQSGLRQTV
RCDTILVSGGWTPSVHLHSQSGGKVGYDADLSTFVPTSTKQHSLSIGACAGRLQLSECLADGASICAQMDGEAQGRGHPA
TPPKAEKLVIPPPHLGYRAGKRFIDIQDDVTVEDIELAARENFRSVEHLKRYTTLGMGTDQGKTSNVNGLTIMGALRSES
PGAVGTTTFRPPYTPIRLGLLSGRHIDKHFSAVRVSPMHEWHVRNGAVMGPANLWLRPKAYLRGNESYAQAWQRECRNVR
QDVGIVDVSTLGKIEVQGPDAGVFLDRVYANRISTLKVGKARYGVLLREDGIVFDDGTIARWGERLFILSTTTANAAAVM
SHFEFLLATAWPTLRVRVTSVTDHYAQIALAGPKSREVLERLQISADVTDSALPHMAVCETVWNGLKLLIYRVSFSGERA
YELAIAAAYGQRLWDQLLAVGAPFSIMPYGTEAMGALRIEKGHPAGPELDGRTTAADLGLGGLVKKEGAFVGKALLGREG
LQAADRPTLVGLRSKSGAAIQSGSMLVLRAEVGAQELGWVASATYSPTLGQHIALGFLVNGANALGRSVLAWSALTSSQV
EVEVVNPCFVDIERERLLG
>SEQF1086_CAE42789.1 sarcosine oxidase delta subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLRLDCPFCGVRSHTEFSYLGDATKTRPADDAPIESWLDFVYIRRNPKGRHEEYWQHVLGCRAWVRVTRDTLTHAIENVD
LTAPIEEPAK
>SEQF1086_CAE42790.1 sarcosine oxidase beta subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRYSFPNLVRNSLSGHRRWPKAWRDPDPKPHYDVIVVGGGGHGLATAYYLAKNHGIRKVAVIEKGWLGGGNTGRNTTLIR
SNYLLAGNSRFYEWSMKLWETMSQELNYNVMFSQRGVLNLAHNDAQRDAFMRRGNAMRLNGIDAQWLTREQIERRVPLLD
CGPGARYPVEGGLLQPRGGVARHDAVAWGYARAADSLGVDIIQNCECTGIDIRNGKVVGIVTSRGRIAADRVGIVVAGHT
SQLAQMAGIDLPIESHVLQAFVSEPVKPVLDTVVTYGAGHFYVSQSDKGELVMGGDLDFYNSYSQRGNLPILQHAVECAM
QMFPFISRLRMMRHWGGVMDMTMDGSPIISKTPVDNFYINGGWCYGGFKATPASGWVFAHTMANDTPHELNECFDMRRFE
SGRLLNEKGAGPRPNLH
>SEQF1086_CAE42791.1 putative dipeptidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHKKIVVPSATDMATRFTQDSFVFDCLSMYYVIDDPWAENCLAAGVNATNVTFGTEQPWDIVLRDFDSGLEKIERSPYLA
LATNRQEIDAANKQGKLAVIIGTQGSAMVDLEFHRLRTMHRLGMRYFGLAYTGPTMFADGCGESRNAGLSFAGIELIDAC
NDLGLILDLSHVGHRSREEAVARSRFPVYTHSNSYALNPNDRNTTDETARAIRAKGGIMGICGLPKTVHPENATLNELLD
HADHWVKTIDAAHVGFGLDFVEAYKSDRSTMPAASRLWRTRRPDIFGTVEEFHLQDYPLGIASIKQLPNLTQGLFDRGYA
EKEVAGIIGGNWLRHFTEVYG
>SEQF1086_CAE42792.1 putative LysR-family regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAPKIIDMQALRIFLAAAKDQNMSIAASKLGLTQSAVSQAIGQLEEQFGIKLLDRNRRPLTLTSAGYVLYERGEQLVSA
ALNLKGAVLEAGHGVRPAIRLGLVDSVATTCGTSIIKQLMPRVAQLKLQTGLSFDVGAALIDRRVDLAITSEPMHRENGL
VRYRVLTEQFVVIFPPGLEVADRENTNLALLSAQLPMIRYRSQSHLGRQAETVLRRADLEIPQFLEVDTADTLTSMVAGG
LGWALTTPLCLLQAQEHAKRVGIGFLQSSGDSRSIYLLARGGEFDSLIKDTFDITVSVLKEECLARLAYIHPSLDRHAMM
GEWPGIAGHSKTTGARRQPDISSEGIE
>SEQF1086_CAE42793.1 putative dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTANPGKDTESRTIAFDDLKMLLASIFEKNGTSATVAHILADTVARADRDGARSHGLFRVPGYVDSLKSGYVDGHAEPVI
DAVAGGFLRVDARNGFAQPALAAARALLMERASKNGIALAAIRNSHHFGALWLDVEPFAEAGFIAITTVNAVARMAPFGG
NTPVYGTNPLAFAAPRKGHSPLVFDLATSAVAFGEIRLAAQHGESLPQGYGLDAQGQPTTSPEAIIAGGSLLPFGAHKGS
ALAMMVELLSAALTDGAFSSEIDQSSHPGAQTSRAGQTVILIDASKSAGGDFSDRTQLLCEMLNAAGQTRLPSDRRYANR
AASERDGMHIDEKTYRTLSALM
>SEQF1086_CAE42794.1 FolD bifunctional protein [includes: methylenetetrahydrofolate dehydrogenase and methylenetetrahydrofolate cyclohydrolase] [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHGRRFKKMKAKVIDGSRASARIREQLKERVACLRARNIRPGLAVLLVGEDPASQVYVRNKVAACEQVGIHSVTERYPSA
WTENQLLDRIASLHGDPAINGILVQLPLPPHMSAHRVIEAISPLKDVDGFHISNAGLLMTGKPQFQPCTPYGVMKLLESE
GVSLRGAEAVIVGASNIVGKPMAMLLLAAGATVTICNSKTRDLAGQARRADVLIVAAGRAGIVDGSMIKPGAVVIDVGIN
RSPDGRLCGDVDYGSAAKVAGAITPVPGGVGPMTIAMLLANTVEAAERSAI
>SEQF1086_CAE42795.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRIFAAVAFMISAFVHAASPYPEKSITIVNPFGAGTASDTVIRALGNRLGSALNVPVVVENRPGANGIVGTLRGVRAPN
DGYTIFVTTGTTVSQNSWLFKDINYDPMTDFVGIAVLGGFPLSIVVPPQSPYRDFKELMQAIHTSTQGITYATAYGMQTV
CGELLGKAAKGKVLGIPYKSTPPAVLDVTAGRVAFACGETATTLSALQGRTLRALAVINPGGSKYIPGVPSVQESLPDFP
IMQSWIGLAAPRGIDSKKVELLSREIYKIASDPAFADSLSGLGYASTPMDAAATAQFMKSDFSRWRDLIKHVGIQPQ
>SEQF1086_CAE42796.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR
>SEQF1086_CAE42798.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIWLAMGMAMAAAAWLAWRVLAWSGPAARRYRAVYTQQAGAHLSEVFLFVDPAQLWAAALAMAAAGGAGAWVFSGSAWLA
AVAAVALLRLPHLLLGAARRRRLRQLERQLPGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFD
AALARLARRASFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGALPPVLMGVLGR
LQPEAMAALWHTLYGWAALALIVVLEGTGIWLIRRIVAIDV
>SEQF1086_CAE42800.1 putative secretory apparatus [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSMRSRLPLHARGWLPWMAVLLAGGTMLWTPGGRAAPPAQPAVLRMEVGETQVLAAAGVTRVAVGNGQVLSATVVDGAEV
ALFARQPGTSSVHIWSGRGARQAYAVEVLPAGRRRLREEVAALLARIPRARSSAVGAHIVIEGSQLSEDDHARIAALAQR
YPEVLDFTGRVGWDRMVLLDVQVVELPRQSLRELGLRWDEPAVGGVHAGAVWNGSSAALAPPPGPLAGAAAVRHAGGLLG
VNALLSARLSALAQRGEAVLLAQPQLLARSGATASFQAGGELPYRTTDKEGNGTTLFKPYGVSLQITPRIDADGAVHARI
EVEASSVDPTLALAAGPALRKRRAVTEFNVHSGQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAI
FVTPTIVSPSDSFLQRRALLGQMQLDQAFPEAPRLGTGAAADQSADWSRPGGAGSQWRRPLWADAQEGAP
>SEQF1086_CAE42801.1 putative secretory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRAARWRQGLRALGGYAFALVAGSLAAWAAREHIQRRVHDIEQQARVPMVASLVAALDLEAGTPLHDELVAVRDMPQAWL
PAGALLPDEAARLDGAVLRAPVKAGEALQAALLSYPEQTPALTEQLEAGQGAITLPLQELPGLSAAARPGDLVDLYVSFT
HRQRQLTMPLLAGSKVLALDPADAQGGASTITLRASAREVARLVAARQEGTLTAVLRRAGAPAQGPARAFAAPSAREAGD
LPALLGMPRDAAPRAAVPVLYGDRLDAPAGALPGDSEAAMP
>SEQF1086_CAE42802.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTPAHLAASASTWLHLPPGVVAAALAGQIQMFGVPAEVRVFHAPQGIDALLAHFATRHAELRDLTVLPGLAVLAGGAGDC
THTISLAPQFGGVEGVAARLCWPRGLPSRQPLADVLLPPHARLRLDVATRDGPVSVAQQVWHWRAAGPTVTARWAVRREA
RLRASGWRLQGAAGPACRCGAPQTWLRAGPQGRERLSLQPALHANGCGMRLLHIGGAP
>SEQF1086_CAE42804.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRPTRAAVTRQAGQALALGLALMALAGMAWLALYGLGQRAGARAQLLRATDAAAYSGAVVQARALNLLAYIHRAQVGHQV
ALAHLASLAAWARFAQTQAARRTAQNPPVALIGLLFGPRAARGYGAAQDAPAGDLMQAYAAHDELAHRVLQQAADTLARD
ARATRDATMRAVLRAHYPQGDDGLTLEVLRDDWPGYLRRVTGTGARGLRGWAQRAAGYFDFLQPRDFTREGNWIVSPRCP
TRRHELRRRGVTWLDRDGRWGASDTLSFHAVRSNRWIGCYFREYAMGWGLAADSGATRAGPHVLRAPEDFSQQDFWRWVH
RHTSWNLLGGRHNPLALSYAASRRLSPGGRGLPAVYEPASSSEAAVGFEIRTQRREEGIVLSARAAGQSHFSLPPGTSVA
RGRPDVLFLPYWQARRAAADAALPMGVRRTVRGPESRP
>SEQF1086_CAE42805.1 integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSVKQRQLGQGMTEYIIVVALVAVAAIAVYQLFGQVVRSQTAAMARELAGEDGSAQARAAQSAAGRAASQTRARSLKSFT
GNAQGAK
>SEQF1086_CAE42806.1 entericidin B-like bacteriolytic toxin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRSKIVLTAFVVFGFVLQGCNTVAGMGKDMSDAGSAITHAAEK
>SEQF1086_CAE42807.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDYVFPPSPPAAVPVAGGNARFPVRRVYCVGRNYAEHAKEMGFTGREDPFFFCKPADAILSVGDGATGEMPYPPKTANLH
YEMELVVVLGKGGRDLTVEQADECVWGYALGLDMTRRDLQGEAKKQGRPWEVGKAFDLSAPLGPIHPRSAVGTLDKGAIW
LDVNGERKQSSDISQMIWNIPESIAYLSGLFELQPGDIIFTGTPEGVGAVVKGDVIVGGVEGLGELRVRIA
>SEQF1086_CAE42808.1 inorganic pyrophosphatase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLDRVAPGKKLPDDFNVIIEIPMNADPVKYEVDKESGAIFVDRFMLTAMHYPCNYGYIPQTLSKDGDPADVLVLTPFPI
QIGAVVRCRAIGVLEMDDESGGDAKLLAVPIEKLYPPYRNIKSYEDLPAEDVSRIQHFFEHYKDLEKGKWVKVKGWKGVD
AAHEEIVRSAERYAKGQA
>SEQF1086_CAE42809.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRTWFWTLLLAVVAVALAVVLRAHAGNVLLLVWPWRIELSLTLTVLLLVAAFVTLYVGLRLLAWLVAIPDRLRAWRGRRA
QERDHELLERGWIGLLEGRFAQAEKDLSKLFDQTKVRSSRVLAALSGARAAHNLGEYERRDRMLESAREQAGEDAGLQEA
TATVSADMLLDQGRAQQALDLLEPLQDGGARHLHTMRLLLRAETALQHHERVFMLARGLLRRNAIGKAEAEQLIDSAGAA
RLRAGMAVDQWRPIWKDLKSDERLLPNIALAGAAAFEDAGEANEAARILEAAVAVKFNPALVAAYARCDAAQVPHRLAKA
ETWLQQRPADTDLLTALGLLCLNGQLWRQAERYLQRSVSRRNDPQAHALLGSLYDRLDRPADAARHWRQATAARVALPVL
VADIALPAADTKADPAWLDAEREYVPNMSEYTAPVIAEAPPEAEPGAVDYVLDPDARAAGEHEPASAVAPEPVSVPPRTA
IDIEDYFDSAPIPAAAIEAPVSSYRAGADDEQPAKPGGAGSSAGPASGDKA
>SEQF1086_CAE42810.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDNTSATPPGTVPGTPGTAAADEAVASQSCKGKGVNSTLVTALIIVILLAVGLGWAAWLQRKQFVSAGQEVAARLNTLG
AELTQSRNDMREALALAQAQSGKVAELEGKVREAQSQYSALQQALQNLNDGASDEMLANDIERLITIASQQLRLAGNVSN
AIVALETAQARLARADRPRFASLQQSINGDLDRLRAVGVVDIAAQSARIDRLVALVGRAPLLVPDAAAPGVTAVPQANEA
VSASVDPGADLPADAAWWQRWQAEIASWPGRAGSALAHELGDLIRVQRVDQPTALLLSPEQAGQLRSTLRQRLLTAQLSM
LMRQPAVWNSELDAVAATLAQYFDGKAPDTVAALALARELGQVEIAVRVPDVADSLNGIAALRAAGFNADGQQD
>SEQF1086_CAE42811.1 putative uroporphyrinogen-III synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQIAILTRPQGRNGALAQRLHDAGWQTLCLPALRIEPLPPENGVVPLPRDYDLVVFVSGNAARLYLEQLRERGELPWPA
GAVAATVGPASARALLDSGQFGADTTVLHPAETAPTHDSEALWALLRARPALPRRALLVRGTQGRDWLADRLVAAGVEVS
RHAVYRRRPAPWAQEGRQRLRDWALAGERPTWLLTSGEGIDALVQGLREEQLLDWWLQGRFVVTHPVLAERLRALAGGGA
DAPMVKNCMPADEAIFATFVAA
>SEQF1086_CAE42812.1 porphobilinogen deaminase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAVERLTIATRASRLALWQAEHVRDLLRARYPACSVELLTLTTRGDQILDRTLSKVGGKGLFVKELETALLDGRADLAV
HSLKDVPVDLHAPFELSCVLERADPRDAFVSNDYGSLADLPPGAAVGTSSLRRESQIRARYPHLVVKPLRGNLDTRLGKL
DNGDYAAIVLAAAGLERLGLAARIRALLEPDDSLPAAGQGALGIEILQGRADVRAMLAPLGDAATLACVTAERAVSRMLG
GSCQVPLAAYARIDGDELALRALVAAPDGRRIVRAERRGPRDQAQAIGESAARDLLADGADAILAELLPTSPAP
>SEQF1086_CAE42813.1 integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLEFFQTLSWAAVFQIILIDILLGGDNAVVIALACRNLAPKQRMQGILWGTAGAIILRVVLIAFALTLLNIPFLKVVGGL
LLVWIGVKLLVPEDEGHDSIKGGTSIVAAVKTIIIADFVMSLDNVIAIAGAAQNAHADHQIGLVVFGLVVSVPIIIWGST
LVLKLIDRFPMVVTFGAALLGWIAGGMLITDVFVVRQFGEQPSAVKIGVEIAGALLVVLLGRWLASRKTASKESVNESA
>SEQF1086_CAE42814.1 integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MELSSAAFWIALLQIIWVNILLSGDNAVVIALAARSLPPDQQKKAIVVGSAAVIVMRIALTLVAAKLLLLPWLKLIGAAL
LVYIGVSLLLPEGEDDGAEKGHGSLLVAIRTIMIADLVMSLDNVVAVAAAAMGDTTLLVLGLAISIPLVIFGSALLLKVI
ERFPIIVWVGAALLGFIAGELLVGDPALEESVARIDTMLGVTQHDFALMVGAIGAILVLALGKIFQARQRA
>SEQF1086_CAE42815.1 succinyl-CoA synthetase, alpha chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSILINKDTKVITQGITGKTGQFHTRMCREYANGKAAFVAGVNPKKAGEDFEGVPIYANVKDAKADTGATVSVIYVPPAG
AAAAIWEAVEAELDLVICITEGIPVRDMLEVKNRMQAMNSKTLLLGPNCPGLITPDEIKIGIMPGHIHRKGRIGIVSRSG
TLTYEAVAQVTELGLGQSSAVGIGGDPINGLKHVDVLKLFNDDPDTDAVIMIGEIGGPDEVNAAQWAKDNMKKPVVGFIA
GVTAPAGKRMGHAGALISGGADTADAKLEVMEACGIRTTRNPSEMGKLLKSVL
>SEQF1086_CAE42816.1 Succinyl-CoA synthetase, beta chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKIHEYQGKELLKQFGVTVPRGIPAFSVDEAVAAAEKLGGPVWVVKAQIHAGGRGKGGGVKLGRSIDEVRQLSSEILGMQ
LVTHQTGPQGQKVRRLLIEEGADIKKEYYVGIVTDRGTQRVCVMASSEGGMDIEEVAAHSPEKILKVFVDPAAGLTDAEA
AELARGIGVPEASVGKAAAEFQKLYKAYWDTDASLAEINPLILTGSGDIIALDAKFNFDSNALFRHPEIVAYRDLDEEDP
AEIEASKFDLAYIQLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATAEKVTEAFKIMLKNKSVKAILVNIFG
GIMRCDVIAEGVITACKAVNLNVPLVVRMKGTNEELGKKMLAESGLPIISADTMAEAATKVVAAVK
>SEQF1086_CAE42817.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPLPPPDTPRQPLHTRSIRVQSYGREDGLWDLEAELIDYKGYDFPKRDGQLFKAGEFIHHMHLRITIDEAYTIIAAQAVY
DAAPYDGVCTNIEQAYRDLVGMNLLKGFRRQVKERFGHVAGCTHMTELSQVLPTAAVQSMAGRRRQNSNPDKRPFQLGGC
HALRTDGPVVQEYYPKWYTGANAGSSADTSSDSPSLSHTS
>SEQF1086_CAE42818.1 5-methyltetrahydropteroyltriglutamate--homocyst eine methyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTIIHNLGFPRIGAQRELKRAVEAYWAGRQTAEALHETGRALRAAHWQRQADAGVAFVPVGDFAWYDHILEWTTLLGAVP
ARFGHPEGKPVDLDTLFRMGRGRAPSGKPAAACEMTKWFDTNYHYIVPELTPGQTFRVAREDLFEQVKEAQALGHRVKPV
IPGPLTWLWLGKGDAFAQGAGDIGKLQLLDALLPVYGEVLERLAGLGVEWVQIDEPALVLDLPQAWRDAYQAVYAKLAAS
PVKLLLATYFDGLKDNLATALALPVAGLHVDLVRAPDQLSDVASGLRPGQVLSAGVINGRNIWRTDLDAALAMLVPVREQ
LQERLWLAPSCSLLHVPVDLAGETELDAELLGWLSFAVQKLDELCLLGKALGGDADPAVQQGLAAQRAALQARRQSPRIH
NPAVAQRMAGQAGVSRERAPFGQRIARQQSELRLPAFPTTTIGSFPQTAEIRALRRDWKSGALTDSAYENAIRKEIEEVI
RFQEKVGLDVLVHGEPERNDMVEYFGELLAGFAFTKNGWVQSYGSRCVKPPIIFGDVARPAPMTVGWSAYAQSLTDKPVK
GMLTGPVTILQWSFVRDDQPREATCRQLALALRDEVVDLEAAGIRVIQIDEPAIREGLPLRRADWRAYLDWAVDCFRLST
AGVGEATQIHTHMCYSEFNDIIESIAAMDADVITIETSRSNMELLKAFEDFHYPNDIGPGVYDIHSPNVPEVDWMVELMR
KAAARLPKERLWVNPDCGLKTRAWPETEAALIGMVQAARTLRAA
>SEQF1086_CAE42819.1 transcriptional regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLEIRHLETLAAIRDGGSLQEAAERLHLTQSALSHQLRDLETRLGTPLLNRRTRPARLTTAGLRVLALADDVLPRLRATE
RELQRLAAGRTGRLHLAIECHSCFQWLMPALDAFRGQWPDVALDLSAAFSFAPLPALVRGDLDLVITSDPQALEAVTYLP
LFKYELVLAVAESNPLAANRHVMPEQLADQTLITYPVDRQRLDIFTGFLDPADIEPAAIRRAELTPIIAQLVASNRGVAA
LPNWALTEYLGQGWLRVCHLGPQGVWPTLYAAVRTEDSDSSYIDEFLTIARDVCFKTLSGIKAAKGLPA
>SEQF1086_CAE42820.1 RecX-family regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATFNRRPPSAARAGRRTANPDDEFETLAQSRDDAAAPSRPGRTLKARAVGYLSRREYSRLELARKLQPYAEEGDDIEAV
LDDLQREGWLSNARFAQSLAHRRAPRQGASRIVQELKQQGVADDQVAELREQLRATEYARALAVWQKRFGEKPADRAAYA
RQARFLAGRGFAHDVIRRILGGGDDELD
>SEQF1086_CAE42821.1 RecA protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDDKTSKAAAAEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK
TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH
KEMAIEIENKVRENQGIVSRAATFPASEAEDGE
>SEQF1086_CAE42822.1 two-component response regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRILIAEDDSILADGLSRSLRHNGYAVDAVRDGLAADSALAVQPFDLLILDLGLPHLPGLEVLRRLRARNSVLPVLILTA
ADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTRRGAGGGATIVRHGRLVFDQTGRIATVDDQTLDLSAREVSLLEI
LLARSGRMVSKTQLVDHLCEWGEEVSTNAIEVYVHRLRKKLEPSGVKIITVRGLGYCLERDQGASYLAS
>SEQF1086_CAE42823.1 two-component system histidine kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLAPLFLLWPMSVAITYVVAQNIANVPYDRALANNLNVLSHQVHAVDGRAALRMTDAARDVLRVDETESVFWLALGSRGE
YLGGDRALPLPPNVGQPRPGEILYADDTLRGFGVRLAYTWIDLGLPDTQPALVMVAETVEKRAQLANDIIKGVIIPQFVV
LPIAVLLVWFGLSRGVAPLNALQQRLRARRPDDLSPIDEQAAPSEIAPLVGAMNDLLDRLSANIETQRRFVADAAHQLKT
PLAGLRTQAELALRDASPEEMQSSLRQLVTGSERATRLVNQLLLLARAENPDSPGQALTDLNAIAYEQTMQWVPQALALS
TDLGFEGADRPVGISGNAILLAELLNNLIDNALRYTPRGGHITVRVSARGDHAVLDVEDSGPGIAPEERERVFDRFYRVL
GTASDGSGLGLAIVREIAQKHQAEVVIDDHPTPYSDLPGTRIQVRFPLPGAL
>SEQF1086_CAE42824.1 putative sugar transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTATLSGQSPSAQRRPMTREERRVIFASSLGTVFEWYDFYLYGSLAAIIAQHFFSGVNPTAAFIFALLAFAAGFAVRPF
GALVFGRLGDLVGRKYTFLITIVIMGLSTFLVGVLPSYASIGIAAPAILIILRLLQGLALGGEYGGAATYVAEHAPHGRR
GFYTSWIQTTATLGLFLSLLVILGVRTFMGEEAFKDWGWRIPFLISVVLLGISVWIRLQLNESPTFKRMKEEGKGSKAPI
AESFGQWRNLKVVILALLGLTAGQAVVWYTGQFYALFFLTQSLKIDSNTANIMIAIALLVGTPFFVLFGALSDRIGRKPI
IMAGCLIAALTYFPIFKGLTHYANPALEKAQATAPVTVIADPATCSFQFNPVGTASFTSSCDVVKSFMARNSVNYENQAA
AAGSVAKVMIGNDEFASFDGKGLAPAEFKTKATELDKALTAAIRSHGYPAKADPAQTNYFMVVVLLTLLVIYVTMVYGPI
AAMLVEMFPTRIRYTSMSLPYHIGNGWFGGFLPPVAFAVVAATGNIYDGLWYPIIIAVMTLVIGTLFVRETKDNDINA
>SEQF1086_CAE42825.1 putative enoyl-CoA hydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSHTFMVHSEVREGALWILFDRPAARNAMTAEMEHAILALCESVAHRPEIKAVVFSGAPASKPAFMAGADFGALETATT
AEEFVALERSSEALLEAIEGMRVPTIAAMAGACVGGGALLALCCDIRIATPSLKFGFPIARTVGNCLSVKNYARLAENLG
AQRVRDMVFSASLLSADALLHAGAIREIVPEDALHGRAQAIAAQVMALAPLTLWATRTSLLRLRDKAVDGIADDDILSAC
YMSADFQEGVRAFMEKRAPAWTGA
>SEQF1086_CAE42826.1 ABC transport protein, ATP-binding component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKAIRIQGLTKHYGAHQVLRGIDLELAQGELLALLGPSGCGKSTTLQMLAGFDQPTDGQIWIGDRQVSGAGVMVPPERRN
ISLVFQNYAVWPHMTVFENVAYGLQVRKVARTELAQRVKRALDTVRLTALAQRYPSELSGGQQQRVALARALVVEPDILL
LDEPLSNLDAHLREEMRYEIRQVHDLLGLTTVYVTHDQGKALVTADKIAVMQSGQVQQFDSPVNVFSRPANTFVASFIGT
NNELHGQLAEPGALRVGDRVLHGDDRSQAGAGGAACLCIRPSAVKLGAAPGANTLSGTVTRVAYLGEYRDVQVELAAGQF
VRAYVDPSSTLEPGQRVEVHLPIEHCQILSVTTS
>SEQF1086_CAE42827.1 ABC transport protein, solute-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSVAMTEKPAVAREPRAGRHALPAIAVTVLVAAALALLVLQPVGIIALNSWRDDLTGQWSLVNYLRIFTTPNLIEPMLNS
LVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAFITPSFIGALGWILLAAPNSGWLNVWLRQWLGGDSPLNIY
SMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMPAIVAGFILSFIQGMTLFGVPAFL
LTPARVPVVTTKLAEFYQMFPPELNLAAAYCMPLLLMTGGLFFLRRRILGRRQYVMIGGKARGSRLVGLGRWRWPALLGA
LLVPAVTVFLPYASLTLVSLSKAWGQGPSWDNLTLHWYRWAVLDNPQTQSAIVNSLLYATMAATVCLLLGVVVAYMVERK
LFRGAWALGATASVPIIIPGIVLSVGFFSAFTQPFYGLYGTGALLVLAFVTTFLPIAYSHGGAIIKTISPDLERASRILG
AGQVGTFGRITLPLMKPGLVSGWMLVFIPVMRELSVAVFLITPQTNVMTTLIYNYKDGGNYEAVCATSNVLLLGTILIVM
LGRLLTGLARRRGAAPVTAGVTS
>SEQF1086_CAE42828.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNQYSRRDMLRLGVSASAALAGSVFLPVRAQDNPLYEAARKEGALNLYWGSYEQKSIEDIRDAFVKKYPGIQVNLLRQGS
QTVYTRLRLELQNNAANCDSLGTTNLLHYTELKKINALMAYRPTGAEHLPEAFRGLDPDNTFHVGAISITSINFQSQKVP
NPPESWQALLDPAWAGKITVGSPASSGDVAHWALAMRLKYGDDFFKKFAAQKPKVGQSNVDTVTDILAGERVVGAAAPFS
YSLTQKAAGQPVDVKVPTDDAILNLGLTAIPAKAPHPNAAKLFTDFLYSTEVSQILARNYWPTLRTDVPWAEGRSLESLK
WFRNPTDDLTKQINDTIALWRSTVG
>SEQF1086_CAE42829.1 probable 3-oxoacyl-[acyl-carrier protein] reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKNERLQGRVALVTGGAGGIGLAVCRRLQAEGARIVVGDIGEERVLAAAASLGEGALGVFLDVADRQSWAAAKRAVDAQG
WQVDIVVNVAGIVRDRSLAKMSDAEWSAVIDVNLRGTWLGCQSAFAWIGERGWGRIINVASTAIFGAYGQANYSAAKAGI
VGLTRTAALEGAKRGILVNVVAPGIVETAILADVPDQVREGWLARMPLKRTARPEEIAAVIAFLASDDASYMTGQTLVVD
GGATTGDY
>SEQF1086_CAE42830.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPVEFERIQLGERHVSSRITITESHIVTFAGLTGDFNPLHMDEVAARENGYGQRIAHGMLGHAVSTGLRSGIDDWDIVAF
LETRRRFVAPILAGDSVRYEAEVLELRPSRSKPFGVVKVSMQLRNQDGVTVQDGEDVFAVAMGGGVA
>SEQF1086_CAE42831.1 hypothetical protein BP2556 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFDVTMPPVQDACSQPFWEAARQQRLLVQQCPTTGRHQWYPRAHSLADPGVAPRWVQASGRARLFSYTVIHKGGVQRAPY
TCVLVELEEGPLMLTRCPSERPLQVDMPMRVAFEKVGDTLTLPVFVPVES
>SEQF1086_CAE42832.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSISNRAAIVGLCESPRRHAPEVHPYQIQMECVQGALVDAGLSLADVDGLCVAAGDWAEGGGVNSVTEFAEYAGLRPTWF
NSTDVGGCSYIVHAGHAAAAIAAGLAEVVVISYAATPCWWPLSTPSFDPFVFPAGPGQYELPYGPTLISAYGLYAQRHMA
RYGTTAEQLASVAVTFRAHAAANPHARLRTPITVDDVLASPMIASPLHKLDCCVVTDGGGAVVMTSAERAQDLRQKPVLL
SGFGAATARTQLSQIAPDLSTPATLSGPRAFAMAGLAPADIDVAQLYDAFTITPLLALEDLGFCKRGESGAFAADGQLTL
GGALPCNTDGGGLSSNHPGKRGIFALIEGARQLRGEGPGVQVPDAGRALVHGLGGTFCAAATAILSV
>SEQF1086_CAE42833.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIYRRLPPLIAVRAFDAFSRSGSIRAAADLLAISHTVVSRHIQNLEDAVGTRLVKKDGRGLALTREGQRFAAKTRRALDL
IADACGELVHGRGDAIHVCCMAGLASRRLLMRLPELESRLDGKELILQPTTARPDFNTDEADAEIIYLTQPFIGDGLRAE
MFSRPRILAVCNPAFRERFPDIGEPEHLVHLPLLHEQSTDQWEQWLGSVGVAQLPILHGPRLWHGHLTMEAAQLGQGIAL
VSELLANDRIARGDLVEVLPNVSVQMGGYYFVAPEHKWNDPAIATVRQWLTEALS
>SEQF1086_CAE42834.1 hypothetical protein BP2559 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLAQSAPAKPLAGLKVLDITHMLAGPYCTWLLGLLGAEVIKVERPGEGDFARAIAPFHGGESLYFMSVNRNKRSIAVNLK
TEEGKQILRDLIARSDILVENNRAGVMDRLGLGYDDAKALNPGLVYASISGYGQTGPYRHKPAFDVIAQAISGMMSITGQ
EGGPPARVGVSIGDIASGLFATVAILAAIEGRHGSGEGAFIDVSMMDCQMALMENAISRYLNAGDVPERLGSRHPLIAPF
QSFETQDFPIAVCVDTEPQWQRFCAALDLEPLLHDPRFQDGPMRALNHSQLEPLLNALFASGRRDDFIARLEAADVPCSP
INSIPEVARDPQVAHRQILVDNEGVKYVGAPFHYNRAPVGGETSPPALGADSVSILRELGRSEAQIADLQRTGVL
>SEQF1086_CAE42835.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPATIVGAVLIVLGAAALVYKGFSYTSEETVLQVGSVKATAQTEKDVAIPSWAGIAAIVVGVLIIGVGRRRKAKKGPTH
RVGPVRGTQCRVNKARGEHGIGVRVLALQSADRGSFVHGLAQGRDLSDQSNPGGLTAS
>SEQF1086_CAE42836.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MWFKNLKIYRLSAPWALNGDQLEECLARFAYQGGNNLEMQSLGWISPRENGLLAHTLNGQILLTLRAEKKLLPTTVVNQV
AKARAQEIEEQQGYKPGRKQMKEIKERVTDELLPKAFSIYRDTRVWIDTVNHWLVIDAAASAKADEVIGLLVKTIDPLPL
DNLYVEQSPAAAMTGWLAADEAPANFSIDQDTELRASGESRAAIRYVKHSIDVDDVRRHIQSGKQCTRLAMTWADRVSFV
LTESLDVKRVAPLDVLKENPDAATQNDDEKFDSDMTLMTGEVAKLLAELVDSLGGEKRV
>SEQF1086_CAE42837.1 aspartate transcarbamoylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSISQQAFLRDAMRRLNLTRDVFAGRIGVKRRALDTWLLPEGSQEFRAMPEVVERFVSEIVQNRDLLEKYTQSGQVGPLR
DRIAVEGRHQLLSVDQFTRESVEDLFRVADMMQPIARRQKVSRVLEGAVLGNLFFEASTRTRVSFGAAFCRLGGSVCDTT
GFTFSSMAKGESIYDTSRVMSGYVDAMVIRHPEQGSVAEFAEATNIPVVNGGDGPGEHPSQALLDLYTILTEFSRLGKLL
DGAHIAMVGDLKYGRTVHSLIKLLALYKGVKFTLISPQGLEMPGYIVEQASRNGNVIEQKSTLAEGLAGADVIYATRVQK
ERFANEEAGEGYTADFQVSRAIIDAYCGPDTIVMHPLPRDSRPGSNDLSTDLNHDPRLAIFRQTDNGIPIRMAIFAVLLG
VEGLVQHSMRDVTWQHPSHIGPDDSVFHGLD
>SEQF1086_CAE42838.1 putative integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGEGADCRPGDNGQGLLAGPLRLLAGLNGLAALMLVAFSLGIVGGEVAPPALQAPLALFLAGLAAAMGAMLFGTAARYLQ
RRQAAAGVRGRGHLPAVVLAVALYLASVAAFGAGCWLAVAPADTDYDQLPTVYAARV
>SEQF1086_CAE42839.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRVGLIGALLAAGVLSGCASQGLLSGDTPGLSESFIVTADFQAAYRRAGEYVRVCHEQRPHPYGVVYQSSRRLGDRGAP
NEVHVFKREEPSKILEIIQSQTETPSTARVTVRVLGDGKWDAAEIAAAKASIQSATPVCRQGGD
>SEQF1086_CAE42840.1 entericidin A anti-toxin precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKNKALIAVLLAMAALSAGCNTVAGAGKDIERGGEKIQGAAQK
>SEQF1086_CAE42841.1 putative exported endonulease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAHAIHLQCCAMKYAVVLAALLSLPLAAQAELVTRPNAVGHRDFRHAKKVLPRVYQNLERDFYCGCPYQDKRIDLQACGY
EPRKQLRRAQQLEWEHVVPAWTLGHQRQCWQQRVNGKPGGRKHCSRTDPSFARAEGDLVNLMPSVGEVNGDRQNFRYAVW
ADRPAPMYGQCETIVDFKTRRIQPRKYVRGRIARIQFYMVERYRLKLSREDRRVLCVWARAYPVDDWERARDQRIRTLQG
NGNHYVTDPAAIQRQCG
>SEQF1086_CAE42842.1 hypothetical protein BP2567 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRYHGPPERPCRIQGGDMGTAKYDHPGYLANAGAAGTYHVGVWCPHGYPAHVHIGRAGSQDDARLRLRIPDGVFQSMPDD
METLCRRAFGQALAEGLLAASEGDFQEVRLRLDAQPWSGPLAAAQPA
>SEQF1086_CAE42843.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE42844.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMIENLPRMRRAGWAAAAITVAGLAFTGCTTTTPNNQAATADQRNEINAGADATLSKLYTASPQAKDLVQRARGVLVFPS
VMGASFIVGGEHGKGVLRTGGKNAGYYSTTSGSVGLQAGAQSRAYVLLFMTDEALAQFRQSSGWTAGADASVAVATIGAN
GRIDTNTAKQPIVGFVLNNAGLMAGVSIEGAKINKLEL
>SEQF1086_CAE42845.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLRGMKKSTCFAVHLVATALVVIVALAWPSFPTRLISVHFADGRLEVNLNSNAEFSYAILADVPASIDATALESLSLKPS
EEGSIVLPAPEPANREYSIIVIKGKDWFELVRQPEAWLRAKFRFEQRGGYTVLGRRTVNIDTESTYSPRPLVLSHTPTLQ
VGQVDSFPYPAIGLAVALLEFLWEKPVMQGPTTLSYREFVKQPLTEKLRAVQEGRFSVQCAGFRELFVHASTGIKGLKVR
PVDAYGSDPQLPGLTSYSHAATEVWVEQLNKWVLFDPWNGIFVERDGIPVSANEMSTHSADQLSIVPVMESIPRFHVDEH
GQTKKVDYDPKSLSLTSFTCVDAGCQPGYQQYFKIIRLRDVHL
>SEQF1086_CAE42846.1 putative transcriptional regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRTEPTVTTLPPIPAKRYFTIGEVSDLCGVKPHVLRYWEQEFTQLKPVKRRGNRRYYQHHEVLLIRRIRSLLYEQGFTI
SGARNRLGDARDAAHDAEAAVRLSAGELQALRNELGDISSMLGEALGGQSENAANA
>SEQF1086_CAE42847.1 integration host factor alpha-subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGTTMLAEPRTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPPRPGRNPKTGETI
PIAARRVVTFHASQKLKSVVEQPNSPPDPASAE
>SEQF1086_CAE42848.1 phenylalanyl-tRNA synthetase beta chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQFPESWLRSLVNPSIGTDELAHRLTMAGLEVEETEPAAPPFTGVVVTRIVDIAPHPDADKLRVCQVDDGSGALLQIVCG
APNAAAGLTVPLARVGAELPGGMKIGVAKMRGVQSSGMLCSARELGLSQDHAGLLELPAALRPGTDIRAALDLDDTLFTL
KLTPNRADCLSILGVAREVAALTGTPLTAPAAEPVPVTIDHRLPVAIQAPDLCGRFAGRVIQGVNARAATPEWMKTRLER
AGQRSVSALVDISNYVMLEVGRPSHVFDLDKIGGDLSVRWAREGETLELLNGQAVALDPKVGVVVAGEQVESLAGIMGGE
ATSVTLDTRNIYLEAAFWWPGAIAGRARRYKFSSEASHRFERGVDYASIPEHIELITRLILDICGGQAGPVDDQCVNLPV
REPVRMRLARCHRVLGVAVERAEVAQIFTRLGLPFQEQGDDFVVTPPSYRFDIEIEEDLIEEVARVYGFERIPDVPPVAR
AKMHAQPEARRGAHAVRRLVAARDYQEVVNYSFVEAAWERDYAGNDNPVRLVNPIASHLSVMRSSLIAGLVAIVRHNANR
KQSRMRLFELGRVFHRDPQLADGPLEVAGVRQPLMLAGVAWGGAVEEQWGVPHRQVDFYDVKQDIEALFGARADALRFVA
DRYPALHPGRSARIELDGQPIGWLGELHPQWTQQADLHHAPVVFELDFEALAERRLPAVRKLSRQPVVVRDLALWVDAKL
PAQAMLDTVAAAIARDPQLSVVQDAQVFDVWREKPVAGQTVTEKSLAFRFWLQDTEVTLDEARVADCIARIKDALVAAHN
ARQRA
>SEQF1086_CAE42849.1 phenylalanyl-tRNA synthetase alpha chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRFEGSNSMTLLVDDLVSQAQERFAAASDAAALENAKARFLGKEGALTVLLKALGKLDPEQKREMGARINQAKQQIEALL
NARRAALAQAELDARLASETIDVTLPGRGKAAGGIHPVIRTWERVEEIFRSIGFDVADGPEVENDWTNFTALNNPLDHPA
RSMQDTFYVDMHDADGLPLLLRTHTSPMQVRYARMHKPPIKVIAPGRTYRVDSDATHSPMFHQVEGLWIAEDISFADLKG
VYTDFLRCFFESDDLVVRFRPSFFPFTEPSAEIDMMFTSGPNRGRWLEISGSGQVHPQVVRNFGLDPERYIGFAFGSGLE
RLTMLRYGVNDLRQFYEGDLRFLRQFNE
>SEQF1086_CAE42850.1 50s ribosomal protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPRVKRGVTARARHKKVIAAAKGYRGRRGNVFRIAKQAVMRAGQYAYRDRRNKKRTFRALWITRINAAVREQGMSYSVFI
AGLKKAAIELDRKVLADLAVRDKAGFAAIVQQAKAALAA
>SEQF1086_CAE42851.1 50s ribosomal protein l35 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPKMKTKKSAAKRFKVRGSGSIKRGQAFKRHILTKKTTKNKRQLRGSAAVHETNVASVKAMMPFA
>SEQF1086_CAE42852.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE42853.1 deoxyuridine 5'-triphosphate nucleotidohydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKSVDLKILDARMREYLPAYATPGSAGLDLRACTEASLVIEPGQTVLVPTGLAIHIGDPRYAAMILPRSGLGHKHGIVLG
NLVGLIDSDYQGQLMVSTWNRGTQPFTLDPMERLAQLVIVPVQQVAFNVVEDFDASERGAGGFGSTGRG
>SEQF1086_CAE42854.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE42855.1 putative GntR-family regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHHRAMNTQPLYLRLADHYRRAIQTGVLAPAQRMPSVRNLVRAHHVSLSTALQACRQLEDDGLIEARPRSGYFVLRPRRP
ALAPVPEPDIKGALDPAQYVGIHDRVSDFIASCQQHPLSADFALAAAPPQAYPMRALQLALTRAARHTPELLTAPVPPYG
HPEFRAVLARRAMECGISATPDEVLVTHGCIEALNLALRAVARPGDTIAVESPTYFGLLQILESLGLRALEIPTSPQRGI
SIEALELALQTHANVRAVVVVPNFQNPLSCVMDDSDKARLVTLCERTGIALIEDDTYGALGDHGTPLALKSWDDSGNVIY
CASLHKTLAPGMRLGWMLGRRWSRRIGMLKFAQSRPNPPLPQAAAADYMGTKAYDRHLARLRQTLRVQREAMAAAVARHF
PDDTRLSVPTGGMLLWVELPAGMPAMRVFEQALRAGIRITPGPMFSNSNRYDHFLRISCGVPYTADIAAAMQRLADIVAA
GL
>SEQF1086_CAE42856.1 hypothetical protein BP2581 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRPRKFCDMEGDMDIQEQIAVIVHTVSHQGGRIDALHSTLASVLHLVKGSPGLREAIEAHLEQSYANLLARSENPQYVAG
FESVRDTVVAALK
>SEQF1086_CAE42857.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE42858.1 hypothetical protein BP2583 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLKRLSVVHSPNGAPMAPSSHEWTDTLKDVYTARAANADLNARYIPLLPVNQRIQHERDRALANMLRQHLSVPPAQARVL
EVGCGSGSNLLDLIRLGFDPANLMGNDLMDSRVEQARHRLPQAVPILAGNALDLDLEREGFDVLYQSTVFTSILDAQARR
DLAQRMWHWTKPGGGVLWYDFAYNNPRNPNVRGVPLREVRALFPHARIHTARVTLAPPLARRLPATLYAPVNNLCPFLRT
HLLCWIGKPAAP
>SEQF1086_CAE42861.1 DedA-family integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQAYIDRIGDFIQANQDWAGPITFLLTFGESMVLVGLLIPATALMLLTGGLIGAGTLSPWGVLAWGIAGAIAGDAVSYAL
GRWLGPGVMRRWPLNTQRSAVARARLFFYRYGFASVLIGRFLGPIRSTIPTVAGIMGMHHLRFQLANVLSAVAWLPLMLA
PGYITARGLGAMDNAQHIGLAAGMGASVLIGCWLLVAVMRKRRQPARANRRP
>SEQF1086_CAE42862.1 integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDSVTQVVLGAAIQGSMLGRSQGRKALLYGGLLGTLPDLDVLMRYPDPVSLMTYHRGFSHSILVLTALAAVMAWLIRRRW
SDAPYSGRRLFATLLLVLVTHPVLDAFTVYGTQLFWPFPLVPESWSAVFIIDPVYTVPMLAAVLVAAWRGMTPATCRGLA
ATVLFGAAYLLVALTGRFQAETSVTAALRERGEQVEAVLATPMPFNTLLWRVIAKTGDGAYYEAVSGRFDRQPPEMARLP
LHTDVGQALAGVPLHERLRWFTNDWLRYDALGDALVVTDLRMGIAGYYTFRFVMAERDGDRWRAVTPRRWPSDRGNWEQM
RLTLARIVGSQPLPLARWARQAEN
>SEQF1086_CAE42863.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE42865.1 putative DNA-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEYLFTLKYQLADADSDLDALVERLGEAGCDDALVGMGLPGRLVLEFTREADSAEAAVRSALADVRRAMPTAALIEAAPD
LVGLTDVAQIVGVSRQNMRKLMLAHPATFPAPIHEGSASLWHLADVLGWLQARGGYPLAQATLDVARMALKVNVAKEARR
LPRSAGAGLDALVG
>SEQF1086_CAE42866.1 putative LacI-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTKATGNRKVVKIVDVAKAANVSPAVVSRILSNDSKLVVREETRARVQQAIEELGYTPNLQARGLRLSRSNTLAMIVPE
LNSPVFPVIIQGAQRAAWERGYSLLVGGMGGEEEDPKVAGRLLRSNRIDGLLVTTGRHEAQMLQELATLNAPFVLVNRYL
DDQHPYVELDERGAAAAITRHFIELGHRRIAFLGGLQRRVGERRVAGYADALAEAGLPWVPQLVVDAGYYKPGGEDGLRQ
LLALDEPPTAVVATNEIVAAGAMAAAHRQGVRIPRDLSIASFSDGIVAELLSPALTAVRFPLERMGYLATAMLVDIVEGR
GEPQAGLCLPHESVIVRDSTARPPGRKARAATR
>SEQF1086_CAE42867.1 ABC transport protein, ATP-binding component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHQDTILNIKGLGVRYGRNQVLHGVDLALPRGASLGIVGESGSGKSTIAWTVLGLLPPGAAVTAGSVVFDGEDITGERAA
GLRGDRIAMVFQDPFTALNPSLPVGRQITEALVERGRADARAARAEALRLMDEVRLPRAGTLLDAYPHQLSGGMKQRIVI
ATALACSPDLLLLDEPTTALDVTVEARILDLLDELRVQRGLSMVFISHNIGLVERMCSRVTVMHGGRVQEAGAAQQVLWH
PAHAYTRKLLAALPLLEKRAPAVPAVGAPIARVRDVRLTFRPAHPLGGWARLLRLPRAEGVAALAGVSLELRPREVVGLV
GESGSGKSTLGRCLVGLQAPDAGTVELSDHDVYRASPEVARRLRRQSQMVFQNPDSSLNPRQRVGEVLRRPLQLMGLDRR
QQDRRLAELLDLVRLPAAYAERYPHQLSGGEKQRVGIARTLALEPSVLVCDEATSALDVSVQASILELLKDLRDRLGVAM
LFISHDLAVVSQISDRVVVMRHGAIVEQGRTDQVLSAPAHEYTRLLLDSVPAFVARRAREAAVA
>SEQF1086_CAE42868.1 ABC transport protein inner membrane component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALVVGTLMLAAIVLVSLGAPWLAQYDFDAMDAAARMLPPSPQHWLGTDEFGRDVFSRVLYGGTTSILLGVSATALSFVV
GVPLGLLAGYLRGWIDDTVMRAVDIVISVPPVMLGLLILASTDPSLWKAALAVGIIYTPIMIRLARGMTLSLANEEFITA
ARARGEGLAWILLREILPNALPPLVVEASLRVSFAILLGAVFSFLGLGTQPPSSDWGLMVAEARPYLERAPWVALSPGLA
ICLTVIAVNLMGEGLRKRLDARGEQRN
>SEQF1086_CAE42869.1 ABC transport protein inner membrane component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MWAYLVRRLGHVVFVVAAMAVLIFLITQAMPGNVAYTIAGHFASPEQVAAIEARLGLNDPLWTQFWRWAGAALHGDMGQS
LVMGRPVGPLISEALGRSALLAVAALALTAALGIFLGVVAAVRHGRWQDRLILAFSWLSISLPQFLIAIVLVLLVAGTLG
WLPATGYVELSAGFGAWLSHLVMPVCTLVLGLVAHVTSLQRSSMLETLSALYVRAARAKGLRERTVLYRHALRNALIPTV
TVLALDFGILMGGIVVVETVFSYPGLGRLLIFAVEQKDLPVLQAGVLAVTVIYALANLAADIAYAILDPRIRYGNLDTH
>SEQF1086_CAE42870.1 ABC transport protein, solute binding component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMSKTGKMAAALAALCLSVGLAGAARAESTLQVALSTSLNSLDPNVTTLGEEYVFNGLVFGGLTRIDANSKVVPDLAVSW
TPSADLREWTFKLRPGVKFHHGKPLTASDVVFSFQRIVDPATGSPGRTQLEVMKSVDAPDDATVHFTLTQPYADFPGLLT
GRQLRVVAQDRIDTIKTQPSGTGPFRFVRYTPGDQLELERNPDYYDKDRIKIDRVVMRVMPEAAARVAALRSGSIDMIWK
LPLETIPDLKKDAAVVVDSVPSASWDGIVLNNSKPPFNDVRVRRAVFLALDKKELVNFALFGEGSPTHSPIAPTDPAFNK
DIGFAPDLAQAKQLLAEAGYAKGFAVDIFVPAGRPSRERLGVAAQQLLRPLGIKLNVQRVPYNRYSAGVAGIAPMYVDGF
FASPVIDAATSPWFYSTGSWNARMWHFSSKRVDQALDAARASTDRAEQIRHYQDFQRALTEEVPGIIGYVTNVATAYRAD
IKNYHTNPFLWLDLYDVEKTGGAR
>SEQF1086_CAE42872.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAGKRTEGSGKGGAKAAGKGGLGEVVLLSGGNPQIAKGYGDAPVQAYIAAMPGWKRAVGERLDALVARTVPGVYKAVKWN
SPFYGFEGEGWFLSFHCMTKYIKVAFFRGASLQPLQPGASKQKDVRYLDIYEDAPFDEARFADWVAQASRLPGERM
>SEQF1086_CAE42873.1 putative membrane transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLLAFLLAAALLAITPGPGIAYVVARTVAGGRAEGLASCLGTALGGLVHVLAAALGLSVLIVESALAFSLLKYAGAAYL
VYLGLRMWLRPRPAAVRVVAPQGARRALAEGVLVEALNVKTVLFFLAFLPQFVDPGAPLAPQLALLGCICVTLNTLVDVM
AVAAAHRLLRSEAARVARARVLTRVSGTTMVGLGVFLALARRD
>SEQF1086_CAE42874.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYLPAHFAETRPEELARIIRAHPLGMLVTQDAQGLDADHLPFEFDPDAGPHGTLIAHVARANTLWQRCPDGSAVMVVFRG
AEGYISPNWYPSKHEAHRQVPTWNYEVVHAHGTLAVRDDERFVRGVVARLTRRHEAGEPRPWKMTDSTPEYIDSMLRNIV
GIEVAITSLVGKRKLSQNKDERDRLGAVQALQARGQDTLAQSMARAE
>SEQF1086_CAE42875.1 putative GntR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGQSGKPASRPSGPNGAGRRIYDLLRGQIADGTLAARAPLPSTRALAAGLGVSRTTVTAVYEQLAAEGFLDTAPGRAARL
ASPLAAPDPDATPASPPAGRPLTLSAWGRRVANIGTPAPLPHPPVRYNFLYGALASRDFPSLAWKRAYQHALQRPPHSLS
YAPPEGEPALRRALQGYLRRARGIACEPGQILIVQGSQQAIDLCARLLLDAGDDFVFENPGYLMARHCFAATGARLLPVD
VDEHGLDTEQLPDTARVRLAYVTPSHQFPLGGVLPIGRRRQLLQWARRHDAWIVEDDYDGEFRYGQRPIDALQSIDTDGR
VIYVGTVSKALSPRLRLGYMVLPRHLVEVFRQAKRLADRHAPALDQQVLASLIDSGVYERHVRRMRRDNERRRTALLEAI
ARELPQGARVDGTAAGLHVVLGLPGLDARDEPALVATAREMGVGVYPLAPLHAPAGAGQARRPAGLILGYASLDVEQIRQ
GIAILASAIGRAAPARANSRTARRLARPPP
>SEQF1086_CAE42876.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTHDRIASMPDLTGILPDRVQRGNIWRLSIAQALAGANSVVVYATGAIVGDMLAPSPMLATLPISIFVVGMAACILPAGA
IARRHGRRAAFLAGTLAGVLTGLLAMAAVIMGGFWLFCLATFFGGCYAAVVLSFRFAAADGVAPERRARALSLVMAGGVA
AGVVGPQLVTWTMDWWPPHMFAATFLVQAAVAAASALILLGVRLPMPGAAEMASGRPLAEIARQPRFVAAVVCGAVSYML
MNFLMTAAPLAMHLCGHSQQSANLGLQWHVIAMYAPSFFTGSLIVRFGALRMATAGLVLTGLSAAIGLAGVDVAHFWWSL
ILLGLGWNFGFLGASALVLECHRPEEKTRVQSLNDFIVFGLMALGSFSSGGLLSAYGWNTVLWVSFVPLVVAAVALVLVP
SRLLSGRAGEGEK
>SEQF1086_CAE42877.1 probable alcohol dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKETYRAMQASRPGVLELVERRTPRPAAAEVLIRVEACGMCGADIADIEKAGPTVPPRVPGHEVVGRIVALGGQVPPIWR
LGQRVGVGRLGGHCNECDQCRQGRFQLCESQPIVGASCDGGYAEMMLARATGLVSIPDELDAQEAAPILCAGVATFNALR
KCGAQPGDLVAVVGIGGLGHMALQYARRMGFRVVAIGRGADIATDAMALGAHAYIDNLEQNVVATLRRMGGAQAVLTTID
QAEAVSALLGALAPEGRLVVLNPGKSALQVSAGLLVGGQRSIVGSLTGTPHDNEKALNFSVLVDARPSIEVWPLARADEA
YRQLQSGAPRFRLVLAMGNTDQD
>SEQF1086_CAE42878.1 hypothetical protein BP2602 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLSVRVAIVGGGLAGLYAAALLEARGVTDYVLLEARETFGGRIMSVPVAAEPDAQRDAAERFDLGATWFWPAMQPELLRV
VTAFGVEAFEQYETGAMLVERARDQPAMRIDAGASMSGAWRMAGGMGALTDAISRRLDAARLRAGWRVQRLRKVDEGVDV
EAEDGVGRARCWRAAQVLLAMPPRLAVRTVAFAPALPDVLALPWAACQTWMAPHAKYLAVYDMPFWREQGLSGGARSAAG
PLAEIHDASGQQGGAALFGFLGVPAAARGRMAQADLRAACRAQLVRLFGERARWPRAEFLKDWADDVCTAVDADRCAQGS
HAELPPALADAGAWKDRLIGIASEWSPAFGGYAAGAVDAARRGVEALLGSPDAGVPARRHQGRLWEAWR
>SEQF1086_CAE42879.1 hypothetical protein BP2603 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLVNADFSLRATVSPRQYQWVASPQPGVERVMLDRWGGEKGRATSIVRYAPGACFPRHEHPGGEEILVLAGSFSEEGGRY
PAGWYLRNPPGSSHAPYSAEGAVIFVKLRHMRPDDSRRVRVDSRDAAGWRVEDGRAACVLVSDRDEQVSMVRLPPGAGVF
ADAVEGAEMLVLEGGLAEGAREHGQGTWIRLPAGCHAGFCAARDGALVYLRTGPWAGQAVDQGQAC
>SEQF1086_CAE42880.1 putative LysR-family transcriptional regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLPAHLNALRAFEASTRHLSFSEAAAELSVTPAAVGQLVRSLETWLGMPLFVRATSGRTRLIPTDAALRALPEIRAGFD
RLSAGLERLREDAAGGALTVTVSPAFAAKWLLPRFERFQAAFPDTDVRLETNLKPVDFVAQRVDIGVRYGAGNWPGLTAE
KLMDEQMYPVCSPELLRRIRPVRQPGDLERLTLIHDLSMDGHAGFPTWDMWFRAADIAGVATSRGLKINNSAAVLQAAID
GRGVALARSVMAGDDLAAGRLVRLFPDIHFDSELAYYIVY
>SEQF1086_CAE42881.1 putative Arac-family transcriptional regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAVRVAVFAFEGASLFHLSVPAMVLSALNGTPSLPRYEVRYFAQSPGRMRSDHGVVIEVSDGLQALRRADIVIVPAWHD
PETAAPAEVTDALRKAHKQGKLIVGLCLGAFVLADAGLLDGKAATTHWAAREAFARRFPDVLFRPDVLYVDDGNVVTSAG
TVAAIDCCLHLVRQRHGCEAANHMSRLLVTPPHRQGGQAQYIERPVPQLPHDNRLPGVLEWARDHLAEDLSVDALAEVAK
MSRRTFTRRFRETTGTTVTKWLNAERVARAQQLLEVTDRSIECIASEVGFGTPLSLRQQFASQLGTSPSSYRRSFCNALR
AAA
>SEQF1086_CAE42882.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQIKSFTRALALALCFSAATVTAQAQSTTEKQVQLQQIRNATVKITYAGTTFLIDPMLARKGAYPGFENTYRSTLRNPLV
DLPLPVQDILADVDAVIVTHTHLDHWDDAAQQLLPKDIPLFVQNQADAVTIRSQGFTNVRVLADQADFGGVTLSRTGGQH
GTDDMYARPEVATFLGDIMGVVFQAPDHKTLYLVGDTIWRDEVDQALSRHRPGVVVINAGYAMLSDYDGSIIMGKEDVLR
ASRSVPGATIVAVHMDAINHMALTRDELKAYVDQHGIEDRVRIPADGATIAF
>SEQF1086_CAE42883.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRHLLAGNQLRQSLLIAQPASVRVALVAGLQAGLAIFVALVSAHLSPWPHLVGFSALGGLAALFGRFASAQGRQRIVMVC
GLLLVAGVLVPSLATYAGAGALSMVLLLALSAGLYTLAVWRWGLTGGPGAVIFVFAVGATLAPVDSAAAVVERTLATAWG
ALVAWLACALTDRLRPHGAVAMAAAPLPPLSLQLMVAGRIAVGAGAAALIIFWAGWQYPAWAAIGAAAVMQGTHLHLTMN
RSLQRMAGTIVGACIVWAILAQDPSFWTLVAAVVLCQVITEVTIGFNYALGQVTVTPMALLMTYMASPAPASNMPVERVV
DTIVGAAIGIVFAVIFSTVDDRVHLARRYRKLRIWR
>SEQF1086_CAE42884.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE42885.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLTLTCLGGAGTVTGSKHLLRHGDTRLLVDCGLFQGLKNLRELNWQPLPVAPADIDAVVLTHAHLDHCGYLPRLVAEGFR
GRIHATPATRDVAELILLDSANLQEKDAEFANRKGFSRHTPALPLYRVVDAERALARFSGVALHRETALPGGATLTLRRA
GHILGAATAQIDIGGMRVVFSGDLGRYNDPVMHDPEDVRNADYIVIESTYGNRRHDAADPVEALGAVIERTVLRGGTVVI
PAFAVGRAQTLIHALWKLRQAGRLHNVPVYLDSPMATSATELLARHASEHKLSAQDCAAACAAVTYVRDVEGSKALPANR
YPKVILSASGMATGGRVLHHMAAFGADHRNTVLFAGFQAAGTRGRKLLDGATETRIYGQWIPIKAEVAELPMLSAHADSD
ELMRWLAGFQEAPRRVFIVHGEPQASEALRERIQRELSWQATVPLQDHGYTL
>SEQF1086_CAE42886.1 putative solute transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MASSPADTPHRSWLRWLPGLAVLKTYQAAWLPRDLAAGLVLTAMLVPVGIAYAEASGVPGVYGLYATIVPLLAYALFGPS
RILVLGPDSALAAPILAVVLSVSEGDPMRAVATASLMAIVSGLFCIILGLLRLGFITELLSKPIRYGYMNGIALVVLASQ
LPKLFAIPTDDGGPLRELWQLAQAVLDGKTNGYSLAVGSATLVLILLLKRFKRLPGILIAVVLATLAVSLFGLDGRGVQV
LGEIPQGLPGFTIPWLSNADLATIVLGGCAVALISFADTSVLSRTYAARTHTRVDPNQEMVGLGVANLATGFFQGFPVSS
SASRTPVAEAAGSRTQLAGVVGALAVAALLLAAPNLLRHLPSSAMAAVVIAAAIGLFEFKDLRRIFRIQQWEFWLSMLCF
AAVVAFGAIPGICLAVVVAVLEFLWDGWRPHFAVLGRVPDLRGYHDLKRYPHAALIDGLVLFRWDAPLFFANAELFQQRL
LEAVQASPTPVRRVVVTAEPVTSVDVTSADMLRELSHHLAESGIALHFAEMKDPVRDKLKRFELSEVFGADRFHPTVESA
VDDYLKRPPHGTIDP
>SEQF1086_CAE42888.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRDLPVLRALRSLPDKVVGEALVSNDAISMRYDVDASTGKVVRPSHDLYGQSISGKVLIFKNTKGGVATGWALLNLKSR
GTAPIALVCDTTNPVFVQGAALAGLPIMDGFRESPRSAVRTGDVVELDGISGELKVLRRGAGGQ
>SEQF1086_CAE42889.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNLTLEEQAMLDGRRGPTLQWALQLQKQVGEYFGAEDMVEVSSVHVSGDVEELGVVGTEFLEHIARQGGSCATHTITDPR
GVEFHGARLRQDPGAIEIETRTVAAFGEMGFKQCNNCIIYQTHMQPGLGEHLGWGDTGSVIYANSVYGARSNFEAGPSAL
AASMTGRVPRYGFHLDEPRKANVIVRVHAAPRELAEWGALGCLVGKTMNGYWDVPVFTGLDVRPDSDALKHLGAALASFG
SIAMFHIVGVTPEAPDLASTLSAERNIRILDVEADALERVFQAYDADFAHPDIVVFSAPQLSAQELTLIADAMLGKNVAA
GVRMFVTAPESVVAEIEASGVKNRLTAAGVEILTGVCFYLLTPRILASLNRFSRLTTNSAKLANIMGGHGYQIQLCRLED
CIRAATEPRDE
>SEQF1086_CAE42890.1 ABC transport protein, inner membrane component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKAYVLPESTPGKLQHLTIFIVSILCGLAVWAWTSGSLFPSILFPGPQATLREGVRMLESGSIIVDAAVSLARIVAGFTI
GSAIGIVVGLLIGYFPMVRTAFNPYLQFFRFVPPIAWVSPAMIWFGVGETSKIFIIVYGTVFTVALSAVAGVADAHVNKI
RAAQMFGATRWQIFRHVVIPSTVSPILTGMRVSMGISFMTVIAAEMLAAESGIGYLILNSRLWMATDKIFVGIFVLGCLG
YGADRIFDLIIGRWARKYHPNPSR
>SEQF1086_CAE42891.1 ABC transport protein, ATP-binding component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEFDYLVLDDVRFKHPGAKPGDPDVLGGMSLQLRRGEFVCILGPSGCGKTTVLNLIAGFERPDRGAISLNGKSIEGPGME
RGVVFQGDDSLYHWLTALENVEFGLRIARVPPRERRQKARAYLDIVGLRGQENKFPSQLSGGMKQRVNIARVLACDAEVL
LMDEPFGQLDAQTRATLQDELVEIWRQTHRTVFFVTHDIAEAVALADRIVVMRAGPSSSVKEVVTCSQPRPRDRGHPDFG
QMYNRISGLISEEVAAARGARLEGELA
>SEQF1086_CAE42892.1 ABC transport protein, periplasmic component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLRRNLIAVLPLLIVAAAVRSEAAEPVKFATGVDAVFLPLVIAVDKGYAKQRGVDAAYKQFASGAMALEAVVAGDADVAM
SSEISTLGPRAKGAKIKTVARGAYSKDLIGLAAISGINGAQDLVGKSVAYPKGTAGEYYMDQYFQHYGISRDALKLVNVA
TPEMVPLLARGDVQAIFAWEPWFSRARSVVKDFKVVEMSGQNGIYTMQFLTNFSEKFLRERPEDVKKTLLAIGDATRWLN
DPNNAAEAAAVLSRVFKVPEADAPRQFEQLKYRLESPEVLKADLVRAGGWLKDKGLIQSADVAGLVDGMLVPDVLRSVPA
AVVNQ
>SEQF1086_CAE42893.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNPTTLADVDTVIINANILTLDRDCPHAQAIAFAAGRILALGTTQELSPLAGRAATVVDARGSTLLPGFIDSHSHLMFGG
VVAQALDLTEAACLSDLLDMVRSRAQSTPEGEWIRGYGVAAGRLKEKRYPTRQELDQVSGGRPVWLAEDSFHASLVNSKA
FRMLEIPLSTPGVELAADGSPTGAFLNDAANVPARQRVFGFISDDEARQMLQHVTQLGATRGVTTVHAFEGSRMSADRDI
ELLMRFRHELPIHVVPYYETFDVERAMQLGVSGVGGCGRNCLDGMPNIQTAAMVDPYCCSEERGSLFQESIKLHNFVIAA
FERGMQVGMHAMGDAAIEQLLATYERAIEETGRTDLRPRIEHFHVPSRDHVRRAADLGVGLAVQPIFTHLWGGRDGIFFE
RLGERRYKRIDTYREILDSGAIASCGADLPVHPADPLRWIQLLVDNQIDRDQSVSMTEAIRMCTYNGAWLGFQESETGTL
AVSKAADAVMLGRDPHQCMPHEIAAIPILKTLGGKLVFESSRP
>SEQF1086_CAE42894.1 putative transcriptional regulator, partial [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKHLEYLLNALDVLEAVGKSESDIALSAVARNVGVSKSGVFRILSTFESRGYAEKGPGGGWRLGPRIIELGVGVPQRTLL
TTAAPLMEALTKETLESTYLSVRDGFSMITLHTLEPDQTIRVHLPVGARTPANCTVSGLAVLANMDEQELLAMLPDELEG
TAPASIVDRARLMEELRIIRERGYAAFLGAWRPDTGGGAAPIFDATGRVVASLGISAPSSRLSDWRLHELGQRAQKAALQ
ISRQLGYVGRLSAVEVAGPAGLAQAAAPSRR
>SEQF1086_CAE42896.1 probable membrane efflux protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPSPNVERRHPWRALAVLLTGNFVTILDLFIVNVALPSIQHGLSATDTDLQLVVVAYALAYGLCLINGARLGDLFGRRRL
FMAGMGLFTLASALCGLAVTPWQLIAARALQGVGAGVLMPQVLASIRVLFEGEARRRAFGVMGAVQGVAATVSQLLGGVL
ITMNAFGLGWRLVFLINVPVGIAALLAGRRALPEWRAPIATKVDMRGALLGAAGLALILVPVMEGREHGWPWWSLVGPVL
ALLVLGYFVHYEQGLVRRGGVPMLDMGLFANRPFVAGIGAVFFFFSAISSFFFALTLLLQFGLGMAPLAAGAVFTPSALA
FFGASLVGPRLAARYGRGALLFGVLVFAAGVALSVVTAATQPHHLPLLVASLVLNGAGQGLVIPLAFNAILGSVREEQAG
MASGMLSTLQVVGTSTGVAVVGGVVFAVLEGAGGWPVGDGAMVYGRALAVAMVYNVAAALASLVLFRAATRR
>SEQF1086_CAE42897.1 putative TetR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYDRIYSMMKNPICAITPNPAMTQLAPSPTVDGRRLRGERARARVLDEAVKLLSVEGLDGITFGQVAERAEVGKSNLQVL
FGDKERLQLAALDHAIGLYQAQVIEPAMRKRTPLARLRALMNGWFDFVETRQLPGGCVITAASSEYRARPGPLRDAIRQY
RDGARARLRELIRQAKAQGQLAADTNEARLAMDLLAYQAFANVAASMDDAAEFKRAKAAVAQMLAGGAG
>SEQF1086_CAE42898.1 HipA-like protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGRRSHSRSLSIWTNGVRVGRWTVPARGEMELQYDVDWVRADVGRPLSLSLPFNLQNLPLKGERVANYFDNLLPDSDAIR
RRVAERFRTGSVDPFDLLKAIGRDCVGAVQILEDEEIPEGFDRIEGVPLSEEDIERHLIETVTPRAFAAGRDPDADFRIS
LAGAQEKTAFLWWGGQWLAPRGATSTSHIFKLPLGLVGGRRADFSTSVDNEWLCLKLLKAYGLDVAEASIATFGQQRVLV
VERFDRRVAPNGQWLMRLPQEDFCQVEGCSPLRKYENEGGPGLKALFATLRQSVNAAVDMRTLMAAQILFWLLRAPDGHA
KNFSIQLLPRGRFQLTRLYDVMSAYPVLGDGANQWSPFEIKLAMALIGKNRHYEMHGIQRRHFNSTAQKVGYGPTAEPII
EDLLARTPAIIAAVQADLPQDFSPRVADSVLGGLAQAAKSLGAMMP
>SEQF1086_CAE42899.1 DNA-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLLAEYQVFPMPPPSQPLLTTGQLGAVLQAARKAQGLTQSALASRIGLSQSRVSHLELNAHQLSVEQLLAWCAALGLELT
IATRGSPAGSSDADW
>SEQF1086_CAE42900.1 GMP synthase [glutamine-hydrolyzing] [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHQRILILDYGSQVTQLIARRVREAGVYSEIHAGDVDDAFVRDQVAQGLKGIILSGSHASAYEEGSMRVPAAVFDVGVPV
LGICYGMQSMAQQLGGTVSFSDHREFGYAEVRAHGHTKLLDGLADFTTDEGHGMLKVWMSHGDKVTELPPGFKLMASTAS
CPIAGMADESRGFYAVQFHPEVTHTVQGKAMLARFVKDICGCEGDWNMPDYISEAVARIREQVGSDEVILGLSGGVDSSV
AAALIHRAIGDQLTCVFVDHGLLRLDEGKQVMQTFTENMGVKIVHVDATSQFMGKLTGVADPEAKRKIIGREFVEVFQDE
AGKLQGAKWLAQGTIYPDVIESAGAKTGKATSIKSHHNVGGLPDTLNLQLLEPLRELFKDEVRELGVALGLPPQMVYRHP
FPGPGLGVRILGEVKHEYAELLRRADAIFIEELRNAKDPASGLTWYELTSQAFAVFLPVKSVGVMGDGRTYEYVVALRAV
QTFDFMTADWAPLPHPLLARVSSRIINEVRGINRVVYDVSSKPPATIEWE
>SEQF1086_CAE42901.1 inosine-5'-monophosphate dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRLVQKALTFDDVLLVPAYSEVLPRDTSLTTRLTRNITLNIPLVSAAMDTVTEARLAIAMAQEGGIGIIHKNLSADDQAK
EVARVKRHEFGIVIDPVTVTPDMKVRDAIALQRQHGISGLPVVEGRKLVGIVTNRDLRFEDRLDQPLRNIMTPQDRLVTM
KEGATLDEAQALMHKHRLERVLIVNDAFELRGLATVKDIVKNTEHPYACKDSQGQLRVGAAVGVGAGTEERVEKLVAAGV
DVIIVDTAHGHSAGVLERVRWVKQNYPKVEVIGGNIATAAAARALVEAGADGVKVGIGPGSICTTRIVAGVGVPQISAIS
DVAKALEGTGVPLIADGGIRYSGDVAKALAAGAFACMMGGMFAGTEEAPGEVVLFQGRSYKSYRGMGSLGAMADGSADRY
FQDPANNADKLVPEGIEGRVPYKGSVLAIIYQLVGGIRASMGYCGCASIDDMRTKTQFVEITSAGVRESHVHDVQITKEA
PNYRAD
>SEQF1086_CAE42902.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTPMPIYTAFAGHALLAAGPLAEVALAARRAADGDAGAAVFIYEDATGRAIDVDTRGTDAEIVARLPLPLPTPVEPEAE
PEGSPARPRGRGRPRLGVVAREVTLLPRHWDWLAGQPGGASVALRKLVEQARREHAGADALRRGRDAAYTFMSAAAGNLP
GFEEAVRALYAGDAERLAAHMAGWPADVRAYALRLAGAADLPA
>SEQF1086_CAE42905.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE42907.1 putative GTP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLRRIALEAFRKFRQPVALEDLDGGLNIIVGPNEAGKSTFVAALRAAFLERYATNKPLADLAPWDMPDARPSVTVDFTH
DGHAYSLRKQFLHRARCELLIDGGAQRHEGEEAENLLARLLGYEFAGRGLSRPEHAGVPGLLWIQQGEGQTLLAPAGHAG
MHVRAALTEVSGELAATDGDRLFERVAAERAALLDARGGKPKGAYKEAEEAWARAREQCETLAAAKRQVDDDVDRLARLR
AEYERAQREQPWQAMAERAAQARQRLEGIARERQALEQLQRELAQADETLALLAEQVGRDQHDAEALAQLRNDAQAAQQA
MEPARAALERVQAGQGELAAQVAHWRERLACAQAGAERGDLAEQLARLQADAQRQQQALQQAAELAAAVAGHQAQLAESA
IDADTVARLREQERLLNELRAQQRAMATRLHHRLLPGKQVELDGVALAGDAQVLITSAARVRIDGVGELEILPGGRDLPA
LLDELRARGAERDALLGKLGVPDLAGAEARLAASEQARRDLDMARKALRIHAPDGVPALQAEQAATARRRDQLQARLQAL
PPAAAGDMPPLAEIQQALRAAEQAAEHGARATVAARTELDTQAARAQLLQAQWQAREQDYAGEQRSAQRAQRGLRLVEAR
ALRDSLARRAKEAGAALAAHQPELVEQDLQRYERSAALEREAQHRRHGELLQLQGRLEQAGAQGLGEQLLLAEADLQRLA
RRRTEYVERAEALDLLWRLLDEHRTAATQRLLEPLARRLQHYLALLFPGAQWRLDETLMPVALRRDGLEDGLDALSFGTR
EQLGVLARLAYADLLAQAGRPALLVLDDALVHADDARRDLIKRALFDAASRHQVLLFTCHAEAWRDMGVPLRELPSGG
>SEQF1086_CAE42908.1 possible exonuclease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRFIHTADWQIGRQYGQFDSDDAAVLAEARLEPVARIAAQASELAVDAVLVAGDVFDTQSVSDRTIRRLFGAMQAYEGP
WVLIAGNHDAALADSVWSRARRLECIGTNVHVPQDTAAVELPLAGLAVLAAPLTQRHTYDDVTAAFDTMDSAAGLVRVGL
AHGSVADRLPEQADAANPIAPDRAQRARLDYLALGDWHGCLRIDERTWYAGTPEPDRFRGNAPGYALLVEVAAPGAPPQV
RQLEVGKYRWSHWVERLDLASDAEDLGHRLAGLQAGDVLRLELHGALSLARRWDALRRDVERAAARVRALVADSAGLVLE
PDAADLAALSVDGYVGAAAARLQAMQGDGAQAAAARVALRLLLQYQRELAEGAS
>SEQF1086_CAE42910.1 leucine-responsive regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRELDRIDRKILDILQREGRISITELAEKISLSATPCSERVRRLEREGVITGYHARINPAALGKTLLVFLEIRLSAKSGD
VFDKVKQELLYVPEVMECHLVSGDFDYLVKARLSEMNEYRRLLGEILKRLPASAESHSYVVMEEIKETLYLPVDR
>SEQF1086_CAE42911.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRLYRYFFRGLITVLPIALTLYLLFIFLAWTEALALTLLRPFIGSFYIPGMGLALGILGILAIGYLVSKQRVQRWLLLL
EMPFTNLPVVKSIYSSLKSFADYFSPSAKTSSQQVVILRMPGNPLELVGLVTRRTLEGLPDGFTQGDRVAVYLPMGYMIG
GYTVFVPTEWVHPIQMSVEEAMRSSLIAWMARAENGAASGTVATPPAPPAPPAPPAAGGPQA
>SEQF1086_CAE42912.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIASRAGSLRRHDGSGSLSMSTAAPVPGGILIACAAAAADANQQALLQYVQGLGLADAVTLSCIRRGETAALSMTLAPAF
QARHAPGHDTTGIAASLGLRPEHDSGDLEREILLAILASPVAFPLPEAAELASAVRIRRHIVQAARRTALAFDTEQAERP
QDDWVYDEQRGFTVLPGRPLVEALRKATQPDESGRLYSFSCYRATEYVTVLGIAQELQACNPELAARLQRQWETRAVMSG
LFHDTFLREYGSLQDPLPPRYYVPGDRLWFRNPDEHSSNVEGYEGSWVFYLGSGLFNNFWKRDQPYTLAGKCVEIYHWRH
GARRNEAGKLIIDESIVEARVHATMADPQATARVLERMVRIRDPQGIYAEGGCIDATRECARWVGPGHTDIVLPDFPRPA
>SEQF1086_CAE42913.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKMRMHAMAAAIALIGTQAAWAGEPEAKKWVDSEFQPSSLSKDQQMAEMKWFIDAAEKLKAKGVSEINVVSETITTHEYE
AKTLARAFTEITGIKVNHDLIQEGDVVEKLQTSMQSGKSIYDGWISDSDLIGTHYRYGAILPLSDYISGAGKEYTNPGLD
LKDFIGTKFTTAPDGKLYQLPDQQFANVYWFRVDWFARKDLQDKLKAKYGYELGVPTNWSAYEDIAEFFSNDVKELDGKR
VYGHMDYGKKDPSLGWRFTDAWLSMAGAADKGLPNGMPVDEWGIRVADDKCTPVGASVARGGATNSPAAVYALTKYVDWM
KKYAPQQATGMTFSESGPVPAQGQIAQQIFWYTAFTADMTKKGLPVVNEDGTPKWRMAPSPYGPYWKDGMQNGYQDVGSW
TFFKSTDANRLAGAWLYAQFVTSKTVSLKKSITGLTFIRDSDINSEFFTKNAANYGGLVEFYRSPARVAWTPTGNNVPDY
PKLAQLWWKNVATAVTGEKTPQQAMDTLANEMDQVLARLERAGMAQCAPKLNPKSDPAKWLSDQHAPWKKLANEKPQGQT
IAYEKLLQAWREGKVR
>SEQF1086_CAE42914.1 putative integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFGWMVWTTPVAVFFACIALMLAGMTIWELRSPTRLRKGFLPIATTRGDRLFIGLMIAAWINLAYVGLGSKAMEWFALDE
PPTVWIGFVLSMVVLALVMRKG
>SEQF1086_CAE42915.1 putative ABC transport protein, inner membrane component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAERRSSWRGIFLALYLLFAVLPLYWMVNMSFKTNTEILGSLTLWPSDFTVEHYRTIFTDPAWYSGYINSLIYVLINTVI
SLAVALPAAYAFSRYRFIGDKHVFFWLLTNRMTPPAVFLLPFFQLYTSLGLMDTHLAVALAHLVFNVPLAVWILEGFMSG
VPREIDETAYVDGYSFPRFFLTIFLPLIKAGVGVAAFFCFMFSWVELLLARTLTSINAKPIVATMTRTVSASGMDWGVLA
AAGVLTIVPGVIVIWFVRHYIAKGFAMGRV
>SEQF1086_CAE42917.1 probable ATP-binding ABC transporter protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MASIELDLAYAYGPDPRGEDDYALLPLRFTFEDGGAYALLGPSGCGKTTLLNCVSGLLRPSQGRVLFDGQDVTGRTPQQR
NIAQVFQFPVVYDTMTVADNLAFPLRNRGVPQAHIRERVGRIAEMLELSAVLERRASGLTADAKQKISLGRGLVRSDVSA
ILFDEPLTVIDPHLKWELRRKLKEIHHEFKLTLIYVTHDQTEALTFAERVMVMSRGRAVQVGTPDDLFERPAHTFVGHFI
GSPGMNFLPAEWRDGALRIGSQRLEGLTAGQAEALAQGGPVKLGVRPEYLRLVAPHTPGALPVRVARVQDVGTYALLGAE
FESIALRARLPLDAALPGAGDTVWLAVLNRHTCFYRDEELIR
>SEQF1086_CAE42919.1 glycerol-3-phosphate regulon repressor protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLNPRQSALVELVRTQGSATIEALARHFDVTLQTVRRDVNLLSEAGMLSRFHGGVRIESSTIENIAYRKRQGLHAEGKR
RIAEAVARAVPDGCSLLINIGTTTEAIARALLRHRGLRVITNNLHVADILSDNPDCEVIVAGGVVRSRDRGIVGEATLDF
IRQFKVDIGLIGISGIEADGTLRDYDFREVRVARAIIEQSREVWLAADSSKFQRQAMVELVHVSRIHRFFTDTQPQEPLA
QVLQDAGVRCDVAAQSAGAAAA
>SEQF1086_CAE42920.1 putative glycerol-3-phosphate dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAPTLAPIDPPARAQLLTDLQGAPDWDVIVIGGGATGLGTAVDAAARGYRTLLVEAADFAKGTSSKATKLVHGGVRYLA
QGNISLVREALHERGLLNRNAPHLVWPLGFVVPAYSLLDQPFYGVGLKMYDMLAGKLNLAPSRWLSRGETLRHAATVAER
VNGRALRGGILYYDGQFDDARLAIALMRTLYDLGGVALNYARAVGLTRTDGRVDGVTVADALGELRVTLRAKCVVNATGV
WVDAVRRMDDPAAQTMVAPSQGVHLTLPRDFLPGEDAILIPKTDDGRVLFVVPWNGHTIVGTTDTPRTDLPLDPQAGQNE
IDFILATAARYLSRKPTRADVTSVWAGLRPLVKATGEASTKSLSREHTIVVSKGGLVTVTGGKWTTYRKMAQDVVDTAIE
HKLLAAAPCRTSELPLHGAPADGQPNGAPHGTPDSYYGTDLATLRALPGADRMLVKASALTEAHVRYAARHELARTVEDV
LARRNRALFLDAEAALLAAPEVARILAQELGHDEAWSRATLAEFEAVAAHYRLA
>SEQF1086_CAE42921.1 putative IclR-family regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDTTTLKGLTVLEALVRSGESRSAGELAQELGLVRSNVHRTLQTLAHAGYVEAIADSAKYRPTLRLWELGNVVVQRFDIR
KQAYPTMQALAAHTGETILLAVRQRLEVCFLDKIQTEKPVGTFVLLGARAPVHCTAPGKAILSRCSHGELQALPETFERY
TAKTITTREALIAELAIARERGYAINTSEWREGVNSLGVPITAPGGEALGAISVTGPDTRVTLKKLDGYAPVLVEAAREL
SRRIGG
>SEQF1086_CAE42923.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGAAPTTREETGKMKTSMHFVRTWCSALCALVVLAGASLPARADYPTRNITLIVPFPAGGSVDMLARLFAAHVGAPFKD
KVVVINRPGASGVVGETAMARAEPDGYTIMFQGAPAAINAEIYKQPLYGAKDLQPVGLIMTAPFVVATYPESEIKTLADI
KTVAAGMPNGLTTAEAGISTRLVAEMYRLITKDKLYLVPYNGGPAAAMSLVRHETGLYFSDLTSVTSYILSGQFRALAVT
SAKRVKDHPTIPTTAEAGVPEFTPQTWFGVFTRTGTPPEIVQALNQAVDGFLRNPAVIQKIEQVGGTPTHMSVAQFEDYY
GRQRLLWRDVIKRAEIPLQ
>SEQF1086_CAE42924.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAQEVKEVDVVVVGGGLAGHSAAIEVSKAGKSVAVLEKMPDIGGSTVLSGGSFAFAGTPEQAGQGIDDSPERLRRDLLA
CAAREQARELIDVYVAHQLDAYRLLRHLGVVFDPIQFSSNQSVPRSHPTSPARVMALMNEHLRQQYGVAVQTSAPVSALH
RDPASRRIVAVTARHADRAVEYRARQGVILASGGFSQSPELMSMLAPHLENVLLTGGAGNQGDGLKIAWAHGAAIADIDA
LVPTFGALQEAVPSEPNTILLAYYRGGIVVNSTGERFVDESKSYKAIGKASMGQAGARGFQIFDQKVMDLSVRAPKTLDF
QRAFDLGRVTAADTIVELAERIGIDPQALARTVSEYNDGIRQQRDSFGRRHLSNQVGEAFPLEHPRYYAYATVPYMATTY
AGIKVDRRMRVVDVWGKPIDGLYAAGEIIGGAHGRGYMTGASLGKALIFGRVAAWSAISG
>SEQF1086_CAE42925.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIVDMRLRPPIPGFARSTLYQAGPKTSHPDFPVEPSVGQCSLPLLISEMDAAGVAVGVVPGRYSMEPFGIVSNDELATLF
ADHPGRFVGFMGLDLGWPMQRMLDEIDARVGTPGFRGVALEPTISADASFCGMNDKRLYPIYEACVKHGVPVSVTLSAVL
QAFTKRPYEHSNPVQAYQVAIDFPGLDIVIAHAAYPWVMEMIGVCLTCPNVWLSPDLYLTNVFPGAQEYAKAAATYLPRR
TLFGTGYPAKPFKPMIDAYAAWGWPQDVVAAILGGNAARLLRLADQ
>SEQF1086_CAE42927.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MCLAVLALHAIPGLPVLIAANRDEFHARPTAEATRWPGSPSIYAGRDLQAGGTWMGVSDHGRYAVVTNFRDPRNIQPDAP
SRGALVEAFLRGAASAQEYLHDVHARGARYNGFNLIVGDAGGAWYCSNRDGAPRRLAAGVYALSNHLLDTPWPKLARTKA
AFERIIAAAPQPDLAALYAALADPTPAADHELPATGLALERERLLSSPFIVSPDYGTRSACILALHDDGRGELHERRFRP
DGAIAGQTDLDFPWRAAHAELHRASCV
>SEQF1086_CAE42928.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKQFRLARAAGPRARLTGELSMNKRHERAWMAAALAAGSIALGGAVQAQGALPAVQQQGSVQFVTGGVGLDESEAMKAA
SKDYPLALTFAARGDGRAGLYLADVAVQILDRTGKPVLDAKADGPYLLAKLPAGTYRVKATSGGVEQTRQVSVRPGSTAR
AVFEWKD
>SEQF1086_CAE42929.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRVMQKGLMAALLLGSAFASAAAADSFPQRPVTIVVPFTPGGAVDIVARTVAAGLSEQWSQSVVVENKAGAGGAIGIQSV
ARAKPDGYTLLLGSVGPVTVNPSLGPVGYDVAKELAPVVLLAKTPAVLVTLPSAPVDDVAQFVKQAKAQPGGLNYGSAGT
GNITHLVSEYFLSSAGLAANHIPYKGSAPAITDMLGGRLDFMFDVVPTAQPLIKSGKYKALAVTTIKRSDVLPDVPTLDE
LGYKGFDVSSWFSLMAPAGTPDAVIGQINAAVNEVLRSDASRERLAAIGAYSAGGTPEQLGEFVRSETARWKKLIDERGI
RAN
>SEQF1086_CAE42930.1 probable dihydrodipicolinate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAARFPGYVPAGVIPAALMPFNEDLSIDEKSLRAHIRDLASVRGISALCVNGVSQEIPGLTLDEQRRALDVMADEVGDQV
PLMHGVYAHGPLDAARIARQAEAGGASCLLVFPPAVFVRGAAMLPEMTLGHYKAIADATDLPLIVFQYETSTGMAHPLDT
LVKLAEAVPSVMAIKDRSNNPIEHERNIRVLQSLARPVNVLTTHSAWLMPSLVLGCNGILSGSGSVHADLHVALWEAVQA
NDLAAARAINDQIYPMASCFYSAPTLDMHTRMKEALVMLGRLPSGRVRLPWVDLSDAERARVRAALVQAGRLPA
>SEQF1086_CAE42931.1 putative IclR-family regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKNIPASAPRDTAQSLRRSIEILKALSAPMKRGFSLSELSRMAGLPHPTVLRLLRHLTGLGMVAWDPATKIYRLGTLTFE
PGLAAAEHCDIRGLCGDSLDRLQAETQDTCYLTMRSGFDAVCIDRREGASPIRVLTLDIGSRRPLGVGAAGLAILDCLPE
EEAETVIQASESKLDRYNRMSTDIMRMLLQETRERGYAVCGNWVTLGVTAVAVPICIEDGRPIGSLSVSAVSHRMPADRW
PGIARALRAEMHEIHRKLQGPSSRPGYGG
>SEQF1086_CAE42932.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNATAAFLLAAALLPLVPAIAAKAGGRRYDNNDPRPWLAGQAGWRARANSAQANTFEALPFFFAAVLYALHTQAPAATLH
VLMGAWLVARLVYVALYIGGRGNLRSLIWLAALLVNVAILLAGS
>SEQF1086_CAE42933.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTEARAGLFARRRYLPALAVLYAALWLALAIEPHDRSDWLLENALVLGFGVALYATRRWFVFSRVSYTLIFLYLCLHAVG
AHYTYSLVPYDAWWQRLTGHSLDQLLGWERNQFDRLVHFSYGLLLAYPIREIFLRVVDVRGFWGYLLPLDVALSTSALYE
LIEWGAAEFFGGELGVAYLGTQGDIWDAQKDMALAGLGALIAMLLTALFNRGARRDPARDWVDRMKPGHT
>SEQF1086_CAE42934.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLHVLGSLYLDERELDFDMIRAQGAGGQNVNKVSSAIHLRFDVRASSLPDSVKETVLALADRRISSDGVIVIKAQTHRSQ
EKNRADAVERLLALLREALRPVRPRRATRPTLGSQRRRVQRKVQHGETKRLRGRVRDD
>SEQF1086_CAE42935.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAYSVKELFKTLQGEGAQAGRAAVFCRFAGCNLWTGRESDRAGAACTFCDTDFVGTDGQGGGKFADAAGLADAIAACWGE
HPADRYVVFTGGEPLLQLDEALLQAVHAQGFTVAIETNGTLPPPPGIDWICVSPKGRAPVVVERGHELKLVFPQADARPE
AFAHLAFEHFFLQPMDGPARAAHTTQAVQYCLDHPQWRLSLQTHKYIGIP
>SEQF1086_CAE42936.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MISVTRRLEFDAGHRIPDHNSQCRNLHGHRYVLEVTLSGDVVQAPGASDNGMLMDFSEIKRIARAHIVDVWDHAFLVYEG
DHAVRGFLDTLPDHKTVVLDRIPTAENLASIIFATLAPHYHGHYGADLRLTRVRLYETPNCWADCGS
>SEQF1086_CAE42937.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQRRRFLTAAAAGAGSAVLAAPAVAQEAPTIRWRMPSSFPRSLDTVWGAAEAITARVSELTDGKFAIRAFPAGEIVPPLQ
VLDAVQNGTTECGHTAGFYYMGKEPALVFDTGVPFGLTPRQHSAWVLQGGGQALIDELYAGFNAIAIPCGNTGAQMGGWF
RKQMRTPDDFKGLRIRTPGLLSMVYQKLGAIPQQIAGSDIYPALEKGSLDAVEFVGPYDDEKLGFAKVAQYYYGPGVMEL
GANLCLNVNRESWQSLPPRYQVALRAACAMAGEELLAKYDAHNIPALKRLVGQGAKLQSWSPEIMAAMQKATREVLEEYA
GKNPRFAKVLESWRAFRADQLLWASVNDGAAERYLLATRENGL
>SEQF1086_CAE42938.1 putative aldolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MESMMSSSYTVQDKDVLRARVDREIESRVSEPQWTRAQKMALACRMLAEQGHWHGGLAGQITERGDEPGTYWTLPFGVGA
DEARASELILIDEDLNPLDGKSLPNPANRFHIWIYRHRPNVQCIVHTHPPAVSALSMVGEPLVVAHMDATPFYNDCAYLP
QWPGLPIGDNEGEVISAALGEKRAILLANHGLLTAGSSIEESAVMALWMEQAAMLQLRARAIGPVKAVPGELAQESHDFL
VKPKIQSLTFAYFARRVLRAAPDCLD
>SEQF1086_CAE42939.1 putative transcriptional regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MASCVLTHSPPPPMTAKSPPVPAPSPEQIGLRIRALRKRQKRTLAWLSAQCGLDKGFLSRLERGEKSASVGTLHTVAGAL
GSSLSALLGEADPQTEIQIVRAADRHRMTTAPGPGEHIYEAITLGSSHSGLSVMVVEVGTHGAHTEAHHGGDELIFVLDG
RIRVHFGGHTVLLERDDSVRFPGYLPHSLSAEGRKLARALVVIASG
>SEQF1086_CAE42940.1 putative MarR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTATDNRLMAMTANLMVLSRAYRSAADKALADFGLSQATAWPVILTGRLGDGVRQGALAEALGVEGPSLVRVLDQLVAA
GLIERREDPQDRRARTLHLTPAGQSLREQVENVLVQLRRQLFQGIADSDLETCLRVFDSLKSALGRESAAAREDYRP
>SEQF1086_CAE42942.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE42943.1 adhesin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAFSFRLVYSECRAMYVPVAPRRRAARRGRGGAGRRLRRALAAAGAALACGAMAAPHRSPSGVPVIDIVAPDANGLSHN
RLREFDVGPPGLVFNNSLTEGRSQLAGYLNRNPGLRQAATAILTEITGTRPSRLHGALEVFGRRADLIVANPNGLSVDGL
VTLNAGRLTLSTGRPVTEGGRLRLDVDAGHIAVAGAGVNTSGLDYFDLVARTVSLDGPVAAGAGARAAALAVVAGRNRFE
PANGSVTPLAGSAGSGGSGYAIDGTAAGAMYGARITLLSSDSGVGVRQRGAVSSPGAITVSSRGEIRLREATAGAGHLAV
DAGGAVAATALASGGAMRIAGEGAVQVGTATSGDALSLHAGGALQAQRLRADGPLDARAQGALRVGAADSLAGISIDTAR
RAELGTLQSRGALSVRAGGEVALEAAKTDGALRVDGAGVTLGTGSAGQARIDSSAFVHVGALAAVGAQAHGGGVEIHARD
DVRVGEGRRGQGVAVRGDITIDATNGVLLLRNDVTADQGMVAASARAAVLEHASLRSGITPRARQARPDGGRPSVALRVQ
DVLFLNGTLRALDEAGAVVPGRHIEVVDGWVRIADEIAETVHDEESVVSDAVIAARSGAVLVEAGTFVNFGGGVGNGGKQ
GAGSDLTLRVRGDARNKGYISAGRRGELQVGAVLKNEFLIDSAGTQRIEAGRIENLGTIQSLGGEAGAQGLVIKAAESVA
QAGVVAAERGVEISGRTEQRPVVAASARSSIAGERLLVQVASWDNRGSLALGQGGMRAEIAGRYAERGTASLDGEYAVSA
QTIGIAGALRQGRGATALVARQEMTLAGRLGLAGPVRLDAGGALSNTGMASACDRLAVTAASFDNAAGGLLSAGSVDIAV
RGAARNAGRLLSNQDIVLGAASFYNAAQAEARGNFAATVGAALENRGSLKAGGDLTLRAARIDNHGVAAAGHDVGLRSPQ
LRNSGQVAAGHDIRIVEGRELRNPGRLDARNDIELAVDDYANTGSIHADGNATLALARGTDRDLVIDTPDILPVALGALR
VKARSLRVNTEIGVPGSLDVQTQGDIDNRQAIVAGGNLKLASASGALNNAAGALLWAGADMALRARRITNGKAALIESGG
GMRLAARDTLINDLGSVRAGGDLRLDAARIENRATLTGHVRHAGENTVGGGGYGFWRGLAYLDYRLRYGNGAAVAAPFYD
VALQAGQSRIESGGDLYVNRELGPGRRGHLRNEGTIQAVGHAYIDGDVENRSLSREVSLADYLRTPLAAAIELKVTDSRA
ALTPAYWSFRTLYELLDYLVGENRWETIWGFYDTYTDWATNTLKNLDLGYVSPPPPQAPPVPAKPELSLPDGSADSPAAR
QALADYREALREYEAARAQARAAEAYGEAQRQVREILAARYGADRLAGLDTETAALDRVIGDYAAALARLGDDEPARAQA
LRKQYEQAVDRIQLAPATPGRALLARALSAALGADWRAQPHPVLVQRWNDFKAGRRGAPLTFYPQAQTVLAAGKGVTLSD
GYLRNGENAARNRGRPDTLRIGEHKVETSGGSFDALRGLGLETRLDIDGALEAVLANRHLFARVGDQPAASSVAVPAAMP
APQGDADPAALRDVPRKPVAPAVALPQPLIETRIKYLDQGGFYGSGYFFEQIGYQPDRATRVAGDNYFDTTLVREQVRRA
LGGYESRLPVRGDALVARLMESAGTVGKALGLKVGVAPTAQQLKLADRDFVWYVDTVIDGQKVLAPRLYLTEATRQGITD
QYAGGGALIASGGDVTVNTDGHDVSSVNGLIQGRSVKVDAGKGKVVVADSKGAGGGIEADDEVDVSGRDIGIEGGKLRGK
DVRLKADTVKVATSMRYDGKGRLAARGDGALDAQGGQLHIEAKRLETAGATLKGGKVKLDVDDVKLGGVYEAASSYENRS
STPLGSLFAILSSTTETSQSARANHYGTRIEAGTLEGKMQNLEIEGGSVDAAHTNLSVARDARFKAAADFAHAEHEKEVR
QLFLGGKVGAGGYEAGFSLGSESGVSSHAGRGAASSASARVGWESVWEKSASSRKTYRNADLRLGDGLLAVGGVLDFGGA
DINRDRYGGGAEGEPGLRLRGGEVRTTKYVDTEHTVRSGGRVGLELGVDGSVNPQVTSSRLGRSLTQAGDGRGIDGGLMF
GQALSTAFQSVMADTISSTLSASLRTEWWNESRNATSENLTHVGGNARIESGAGDMALAGVRFDGGREVDLRSAGALRMR
SAESREQRTRDAHSLSLDARLAMGANLVKGDAYVRGTAGLSGHHEHAASERHTHGRTGVRAANVHLQAARDLVMQGARVQ
AAQGARVEVGGALSMASVQDVHDESHTSADWMAAAGAHASTGNGFKPQPVAQVGVSFSHGHDRGAIVAQRTGIAAGGPLS
VRVAGDAQLIGADLVSTAGQGRVQVGGRVRAEQLADRRDRDGGSAGVSAPALLSTSTRPTLVVSGGRLERDHYDAVHRSV
IAVSPGGLAAADGVSGHLQRDPVTGLRVLRDEHWAGGDMAFTLGSVPKFDRGKYAPPRPDTSAPGGSPFSLHR
>SEQF1086_CAE42944.1 phosphoribosylformylglycinamidine synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLVQHLPGSSVLSAFRRERLLAQLKKAGLPVADISARYEHFIHTDSALPAEQQARLAQLLDYGTPAAETPAKSLELLVI
PRLGTMSPWASKATDIAHNCGLDAVRRIERGVRYALTPERGLLGAKSFDADMLARAADCLHDRMTETVVDGAFDGQALFE
TLAGKPMRTVAVQAEGRAALEQANVALGLALSEDEIDYLAQSFGDLGRDPTDVELMMFAQANSEHCRHKIFNAQWVIDGQ
EQSNTLFGMIRATHKAQPAGTVVAYSDNAAIMEGGPAQRFQAGVPGVAGEGAQAARYVRRDTTVHTLMKVETHNHPTAIA
PFPGAATGAGGEIRDEGATGRGSKPKAGLTGFTVSHLRFDDALQPWENDHHGLPERIASPLSIMIDGPIGGAAFNNEFGR
SNLLGYFRAFEQTAGGTRWGYHKPIMIAGGLGSIDAGLTHKEVIPPGALLIQLGGPGLRIGMGGGAASSISMGSNSAELD
FDSVQRGNPELERRAQEVIDRCWQQGERNPIVAIHDVGAGGLSNAFPELVNDAGRGAIFDLKRVPLEESGMSPAEIWSNE
SQERYVLSILPQDLERFDAIARRERCPYAVVGVATEERQLRVVDGEGLPGLDTIRAQGENEVRPVDVPIDVILGKPPRMT
RDVQRLPGVSEPLDLAGLDLTEAAYRVLRHPTVANKSFLITIGDRTVGGLSSRDQMVGPWQVPVADCAVTLADFEGTRGE
AMSMGERTPLAMLDAPASGRMAVAEALTNLAAADVARLEDIKLSANWMAACGVPGQDAALYDTVSAVSELCQSVGLSIPV
GKDSLSMKTSWDEVGEQRQVVAPVSLVVTAFAPVGDVRASLTPQLRTDAGDTVLILIDLGRGRHRMAGSILAQAYNQVGE
TVPDIDAPQDLRAFFVTIRTLAEAGTILAYHDRSDGGLFATLAEMAFAGRTGVSVNLDMLTFDPQSADWGDYKIRPEQVA
VQREELTLKALFSEEAGAVIQVPASQRDAVMQVLRGAGLSAHSHVIGGLNGADEVEFYRDGRKVWSQPRADLGRAWSEVS
YRIMARRDNPACAQAELDVWNDAKDPGLAPRVAFDPQEDVAAPFIGTGKRPRVAILREQGCNSQVEMGWAFDTAGFEAID
VHMTDLLSGRIDLAGMQGLVAVGGFSYGDVLGAGEGWARTIRYNDKLSDQFAAYFARPDTFALGVCNGCQMMAALAPMIP
GAEHWPRFTRNQSEKYEARLSLVEVTASPSIFFAGMEGARIPVAVAHGEGYADFSQQGDAARALMAVRYIDNHGAATETY
PFNPNGSPGGLTAVTTADGRFTVMMPHPERVTRNVMMSWAPAQWGERDAGGAFSPWMRIFRNARVWLK
>SEQF1086_CAE42945.1 putative integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQPLILPALCSTLLPMHRPDASDEPVEPIIPPEADPAVKVPLALEDWLAVILLAALAIITFLNVLVRYLTDQSFAWTEEI
SVFLLIVLTMVGASMAFVRNHHIRIEILADNGSPRRQYLMALTAHSLVVFFFALLTVLSARLVYDEFRYEETSPAIGVPT
WWYSIWMPLLAAVITLRVAGAARRLIARHKAET
>SEQF1086_CAE42946.1 putative membrane permease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIAALLFAVFITLMLIGVPVGVALGLGGTVAIVLSNLDVSWFGLLAVPQNFYAGLAKYPLLAIPMFVLVGSIFDRSGVAR
RLVDFAVALVGRGPGMLPLVSIAVAMFLGGISGSGPACAAAVGAVMIAAMSRAGYPAPYSAAVVAAGAATDILIPPSVAF
IIYSVLVPGASVPALFAAGMVPGILAGFALIIPAVWLARHHSMGAREAHLPRPPLWASLREASWGLAAPVLILGSMRMGW
FTPTEAAVVAVFYGLFVGMCIHRTIKVRDLFVILREAAELSAVIMLVVTLAGIFAWALSTLSVIDPITHAIVNSGLGEWG
VLALLIMLLMTVGMFLDGISIFLIFVPLLMPIANAYGWDPVWFGVILTLKVALGQFTPPLAVNLMVSCRIARVPMESTVG
WVVWLLGGMFLVLVAVLIFPQLALWLPHRLGY
>SEQF1086_CAE42947.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKFRNIVGAALCAAFALGVAPAQAQNYKSEYKLSIVVGTTFPWGQGAVIWSDLVRERTEGRINIKVYPGTSLVQGDQTRE
FTAIRQGVIDMAVSSTINWSPQVKQLNLFSLPFLMPDYAAIDALVQGEVGKEVFKLIEKAGVVPLAWGENGYRQLSNSKH
EIKTPADMKGLKLRVVGSPLYIDTFTALGANPTQMSWADAQPALASGAVNGQENPLSIYTGSKLYTVGQKYLTLWNYVAD
PLIYVVNREVWNSWSEKDREIVRQAALDAGKQQIVIARKGVTPEDPSLLKEIAGHGVTVSSLDAGQHAEFVAATKPVYEK
WKKQIGAELVDLAEKSIAARKK
>SEQF1086_CAE42948.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE42949.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNNHKHARLTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKWLARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFA
QQRRQRLPLWRIAREAGRSLATVARYMERIGLSRLASLEPPAPVRRYERASPGELLHIDTKRLGRIRGVGHRITGDRAQN
RNRGIGWDAVHLAIDDFSRVSFARILDDEGGDQCAEFLRQATAYYASLGVRIDRVMTDNGSGYVSRTFRAVCVELGIRHI
RTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQPFIDRYNWCRPHSALGHQPPITRIPDVNNLLRIDS
>SEQF1086_CAE42950.1 fimbrial protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQAKTFLLGAALAGVALAAHAEDGTIVITGTITDQTCTIEDPSPGYIKVVHLPTISKSALKNAGDVAGRTRFDIKLKDCP
TTVNTLKLYFEPGPTTDYGTKDLKAYKQAWYVDAATLLKSPPSVTEAKGVQIRLMNLNGKQIPMGETEPNQHAAAFSGTM
QAGQAKKSFTLHYLAGYVKKASGEVEATMLTTYVGFSVVYP
>SEQF1086_CAE42951.1 phenylacetate-coenzyme A ligase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTTMSKPGLDPIEHASRDEIAALQLERLKWTLSHAYQNVPHYKKAFDAAGVHPEDLQQLSDIARFPFTTKQDLRDNYPF
GMFAVPRERVSRVHASSGTTGKPTVVGYTARDLDNWANLVARSIRAAGGKPGDIVHVSYGYGLFTGGLGAHYGAERLGCT
VVPMSGGQTEKQVQLINDFRPDIIMVTPSYYCNILEEQRRQGMDPRQSSLRIGIFGAEPWTGQMRADIEAEGGIDAVDIY
GLSEVMGPGVASECVETKDGPVVWEDHFYAEIVNPDTGEPVADGEPGELVFTSLTKEAMPIIRYRTRDLTRLLPPTSRSM
RRIGKITGRSDDMLIVRGVNLFPTQVEELVLKIAQLAPHYQLVLSRSGNLDELEILTEVRAEFSTLTEAERAGLGKQLQH
AVKSYIGVSARVQVADTGFVERTLTGKARRVIDKRPR
>SEQF1086_CAE42952.1 phenylacetic acid degradation protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAHVPAVDVPSDPHELARAVGATMYAGDAASQGLGMTVVEIAPGYAKLSMPVRADMLNGHKTCHGGFIFALADSAFAFS
CNSRNVSTVASGCTIDYLAPGLEGDVLTAVAQERSLAGRTGIYDVTVTNQQGRSVAVFRGRSYRIRGQVVGEPPQD
>SEQF1086_CAE42953.1 probable enoyl-CoA hydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTYQDILFELAGGVARLTLNRPDKLNSFTARMHCEVADALGRIEREGARVLVLTGAGRGFCAGQDLSERRPTADGAPLDL
GETVEKFYGPLVRRLAALPLPVVVGVNGVAAGAGANLALAGDIVIARESASFIQSFCRLGLIPDTGGTFALPRLVGRARA
AGLALLGNKLSARQAQDWGLIWQCVADDEFDSALDGLAAHFAQAPTKGLAFTKRALQASLGNDLSTQLDLERDMMRELGR
SADYAEGVAAFLDKREPQFKGK
>SEQF1086_CAE42954.1 putative oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQDFFERHQPMLQKALEAAAQRGYWSPFPESPSPRNYGETAAQDGQAAFEALRGKPFALDLPQASGAVGGEVSPFGFEL
GITYPQVAPEALVAASSKALEQWRRAGPRAWVGVSLEILQRLNRRSFEMAHAVQHTTGQAFQAGGPHAQDRGVEAVTYAW
QEMSRIPGVALWEKPQGKHDPIKMEKRFTVVPRGIALVIGCSTFPTWNGYPGLFASLATGNTVIVKPHPGAILPLALTVQ
VAREVLGEAGFDPDVVLLAAHPAGDDTAQRLALDPAVRIVDFTGSSANGNWLEQNARQALVYTEKAGVNQVLIDSTDDLK
GVARNLAFSLALYSGQMCTAPQNIYVPRDGIQTAEGRVGFDEVAAALGAALDKLAGDPAKAVELTGAVQNDATVARIGKA
RQLGLPVLADSKALAHPQFEQARVHTPLLLRADAGNDALGQEWFGPIAFVVATDSTAHSIELAGASVRQHGALSLSAYTT
DEAVASRVQDMAEHSGVSLSLNLTGGVFVNQTAAFSDFHGTGANPAANAALSDSAFVANRFRVVQTRRHV
>SEQF1086_CAE42955.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE42957.1 phenylacetic acid degradation protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNALPRVPAGQVLAWLESVPDPEIPVLSVVDLGVVRDIGWDGDTCVVTITPTYSGCPAMREITHDIETTLAGHGLASVRI
ETRLAPAWTTDWMTARGRAALRQYGIAAPVERAVDISGISRRRAAPAIECPHCGSLDTRLISHFGSTSCKALYRCVACRE
PFDYFKPH
>SEQF1086_CAE42958.1 phenylacetic acid degradation protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDKSLFEYLLRLGDTTLVLSQRLGQWCGHGPVLEEDLALTNTALDLLGQARMWLTLAGEVEGAGRDEDRLAYLRDAPQFR
NLLLVERPNGHYGDTMARQFLFDTWHYFLLIRLARSADERVAAIAAKALKEVTYHARRSADLVVRLGDGTALSHARMQAA
IDAAWPYVGEMFVDDAIDQDLAARGIACELSSLRDEWLAQVREVLDEATLAMPQEDEAFHPAHRGGRQGRHTEHLGYILA
EMQHLQRAYPGASW
>SEQF1086_CAE42959.1 phenylacetic acid degradation protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKDWPLWEVFIRSQHGLAHKHVGSLHAPDTEMAINHARDVYTRRNEGLSIWVVRAADIVASSPGDKEPLFEPANSKVYR
HPTFFPMPDEIKHM
>SEQF1086_CAE42960.1 phenylacetic acid degradation protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYAQLVETGVGKVKHVDQLEGPEQAFQRRIDDGVRIEPKDWMPEAYRKTLVRQISQHAHSEIVGMLPEGNWITRAPSLKR
KAILLAKVQDEAGHGLYLYSAAETLGVSREDLIDDLHTGRAKYSSIFNYPTLTWADIGMIGWLVDGSAIINQIPLCRCSY
GPYARAMVRVCKEESFHQRQGYDLLIQMCLHGTPEQKAMCQEAFNRWWWPALMMFGPSDADSPNSAQSMQWKIKLFSNDE
LRQKMVDQTVPQAEYLGLTVPDPDLKWNAERGHYDFGAIDWDEFYAVIKGHGPCNRERLAARVKAHEDGAWVREAMAAHA
DKQARRKAA
>SEQF1086_CAE42961.1 phenylacetic acid degradation operon negative regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MASTPSPLDRFLSRLLKNDPPRAKSLCVSLLGDALAPHGGAIWLGDLIELLAPIGINERLLRTSVFRLVAQGWLQSERHG
RRSLYLLSEHGLRHTAHASQRIYDGPARAWNGEWTLVALPRAGNNGLAERGELRRELLWEGFGMVAPGLFAHPQTEARAA
HDILEKLGIPDKALVLSARDQAGAGGLPIASLAGQCWNLDEVADQYRLFSRNFGPVEKLLDPPPTPAQAFAVRVLLLHNW
QRIVLHDPQLPTPMEPDGWPGNAARALCRRIYWQVFDASERHLDAVAGRENARYRPAQADIMGRFGGRP
>SEQF1086_CAE42962.1 hypothetical protein BP2686 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDIERVEQVRAVERLAHRRGLALMPRAGLAAADFVAARLPAGAQVLALAGPGNNGGDALVAATLLQARGYRVAVVMPAGP
ARLPDDARRAWQDWCAAGGQASADLPAHAPALVIDGLFGIGLARPLDGAWQGLIDQVNAWRVPVLALDVPSGLSAASGQP
LGDPPGRPVRATWTLSFIGVPAALRAPGAAAWCGEQYLSLLGLTPAFLAEAVGPCGQATATAARRSGP
>SEQF1086_CAE42963.1 oligoribonuclease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAANENRLVWLDMEMTGLDPEKERIIEVAVVVTEADLTVVAEGPVLVVHQPDSLLDAMDNWNKSTHGKSGLIEKVKASTL
GEAQAEQILLEFLAEHVPAGKSPLCGNTISQDRRFMYAYMPNLERFFHYRNLDVSTLKELARRWAPAVYKGFDKKSRHEA
LADIYESIDELKYYREHLLKV
>SEQF1086_CAE42964.1 putative integral membrane zinc-metalloprotease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAPVPLFTLFFVVLLLADIGVRLWLATRQIRHVAANRQSVPPEFAPRIGLHSHQRAADYTVARVRLGMLERVYDAAILV
ALTLLGGLQFIDLWLGQLTQHDFLRQLLLLACVPLLLGLLGLPFTLWRQFRLEGRFGFNRMTPALFFSDAVKGVLVALVL
GLPLAAAVLWLMAGAGAYWWLWAWGLWLGYNLLLLLIYPTFIAPLFNKFTPLNDPELAGRIRQLAQRCGFALNGLFVMDG
SRRSAHGNAYFTGFGKSRRIVFFDTLLARLNGDEIEAVLAHELGHFARRHIIKRLALSFAGALVFFAALGWLARQPWFYE
GLGVLPNLGGRNDAMALVLFFLVVPVFTFMLTPLASWYSRRDEFEADRYAAAQSSPDRLVSALVKLYDDNAATLTPDPVH
SAFYDSHPPAAVRIRHLMAGA
>SEQF1086_CAE42965.1 putative ATP/GTP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSNQAEGLIIAAHGRHYTVELADGSLRQCFPRGKKNGPAVGDRVRITPQGRDEGAIEAVLPRRNLLFRSDEMRVKQFAA
NVDQLLIVVAVEPTFADDLTGRSLAGAWSADIEPVIVLNKIDLPNGLDAARARLEPLRRLGVPVIELSAQDHAMVHERLA
PRLAGRTSLLLGQSGMGKSTLLNTLVPHAQAATREYSAALDMGRHTTTSTRLYHLPEPGGDLIDSPGFQAFGLQHLNGEQ
ILRGFPEFAPHIEHCRFYNCTHRHEPGCGVLAALQAGQIDAGRYALYLRILDENAAARPY
>SEQF1086_CAE42968.1 ABC-transport protein, inner membrane component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATMFKLILRRVVVAIPTLILVSMIVFMLQKILPGDPVLTLAGEERDPAVLDYLREKYRLNDPLPVQYGAWVAQVLQGDL
GKSMRTDVPVLTLIAQKLPVTLQLAVMAMAFALLVGIPLGIVAAVRKGTAVEMGANMAALSGMSIPNFWLGIILTMVVSV
QWKLLPASGYVSPAEDFWLSIKTMLMPALVLSTAIAAYLMRHTRSAMLEALSADYVRTARAKGVAPRKVVLRHALRNALM
PIVTLVTLLFGELLAGAVLTEQVFTIPGFGKLIVDAVFNRDYAVVQGVVLCVAVGFIVMNLLADILYILVNPRLRHA
>SEQF1086_CAE42969.1 ABC-transport protein, solute-binding component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTKTKSLSMMMGAAVLAGAGGAALAQDLRIGLQEDPDVLDPHRARTYVGRIVFTSLCDKLVDIDEKLQFVPQLAQSWSFS
EDNKTLTFKLRTDVQFHDGSKFDAAAARANLGRAMTLQDSMRKGELASVEKIEAPDPATLVLTLKRPDATLLAQLSDRAG
MMLSPKAFEGDAAAVGRKPICSGPYKFVERVQNDRIVLQKFDQYYGAKDYHFDKLVFLPIPDTTVRLSNLRAGGLDILER
MNPSDAPQVKNDASVQFMPVSGLGYQEVFFNTGNGKRAETNPFKDKRVRQALALSIDRAIINEVVGGGIFDPASQPFPPA
SPYHSDKFPVPKRDVERARALLKEAGLQKVKAEFAFGNNTTTSAIAERIQAMAAEAGFELSLRPTEYAAMLNEAQAGNFE
MIMRGWSGRVDPDGNIYQFVTCKGALNDGRYCNAEVDKLLAEARTVPDQAKRKAIYDQAQALLQADTHDIYLYYQPWPFV
LGKNVRGFKPYPDGMVRLKGVTLVK
>SEQF1086_CAE42970.1 putative gamma-glutamyltranspeptidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKAFNWVNPYPSTRIPVFARNVVSTSHPLAAQAGLRMLLKGGNAVDAAIAAAATIVLVEPVSCGLGGDCFAIVWDGRQLH
GLNSSGVAPAAWNVEYFKRKYGTGPDGLAVQPKRGWDAVTVPGVVAGWAALHEKLGKLPFEQLFEPAIEIAERGYTVPPV
VAHKWAAAAAELGEQPGYAQAFMPEGRAPRVGEHFLFPDAAYALRRIAASGGRDFYEGELAERIAAFSKECGGAMTLDDL
RNYRPEWVKPISRSYRGYELHEIPPNGQGIAALIALGICERFDLADMPVDSVQSQHLQIEAMKLAFSDLYRYVADPRSME
VTPQQMLDDAYLDSRARLIDPDRATHFEAGRPHAGGTIYLTAADENGMMISFIQSNYMGFGSGVVVPGTGISLQNRGVGF
SMNPASANVVEGGKRPFHTIIPGFLTRGGKPVMSFGVMGGDMQPQGHLQTVIRMLDYHQQPQAACCAPRWKVNRDFTLDI
ESTMNRATVEGLKNLGHRLKAVDDPYMDFGAGQFIWRMAESDNDLGYVAASDSRRDGQAVGF
>SEQF1086_CAE42971.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSIRFLRTFLAVAQHGTFSEAAEQVALTQAAVSFQMRALEAELGRELFDRGGRLAILNAAGRELVPEIKRLLDLYDHLK
APRNVPGELAGSVSVGAIVSCMGTLSKVVSQLKRDHPALDVRVFSGKASELAGKVEAGELDAALVVEAGRKMASTRWTPL
YEEPLVVLAHPHAPGADAREVLAANPFLRFDRTQRTGRQIDRIVRRLGGGLNEFLELNAIETLVELVRQEVGVTLLPLLN
GANWQASPQLRVLPLPAELGPAVRAIGMIERRDHARLAVTAEICAQCGALFGR
>SEQF1086_CAE42975.1 endonuclease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRINCVPVEELSGPHLVAEYRELPRVFALAHKAAARGALVQPAAYTLGKGHLLFFYTRLGYLARRHRALVEEMRRRGYR
PAFAGVTCEDFADIPAPFWNDRTPTEEALALNRARIAARGGGKA
>SEQF1086_CAE42976.1 nitrogen regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKQVTAIIKPFKLDEVREALAEVGVSGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIRVEVVLADDMVDPAIEAIVKA
ARTGKIGDGKIFVTPVEQAIRIRTGESDEEAL
>SEQF1086_CAE42977.1 putative NAD synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLARVGIAQINACVGDLAGNAARVLQAARQAAGQGADVLVTPELVLTGYPPEDLLLRPRFIQEQQAVFERLCQDLAGLA
GLHVVIGHVLARQDRLYNAATVVCEGRVLGSYCKRELPNYSVFDEQRYFSAHGEAFGFTVKGVRFGLNICEDIWFERAPR
AAAADGAQVLLVPNASPYNTGKQEERLSVARRSVQDTGCALIYANLVGGQDELVFDGASFALDAQGRMSARLPDFTEGVN
VLEVDARSTVRPVTEQAAVQPYGLEEQVWNALVLGVRDYLGKNGFPGAIIGLSGGIDSAVVLAVAVDAVGADNVRAVMMP
SRYTADISLTDAADMARRLGVQYDVIAIGEVVDRFEAALAPQFAGLPVDATEENIQARARGTLLMALSNKTGRLVLTTGN
KSEMTTGYCTLYGDMAGGFAVIKDVPKTLVYRLANWRNQRQPIIPERIITRPPSAELRPDQTDQDSLPPYDILDGIIERY
MEHNASAADIVAAGFPREAVGQVVRLIRINEYKRRQAPPGPRITPRAFGRDWRYPVTNGFRETV
>SEQF1086_CAE42978.1 putative membrane transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLPKELENVVATLDNYVPDTAWGQTLVGIGVLVLTALFVQWVVARVVLYFAHRLLVLSGREDWDRALSRRRAYQNFWYAV
PFAVVSMGIELVPHAERAVTVVGRLSHAGAWICVFVAFSGVLSAWQDTYSATTRAQTRSIKGYIQIGKLILCAVGAVLVL
SILLDRSPLWMISGLGALSAVLLLVFKDTLLSLVASTQLTSNDMLRIGDWIEMPQANADGFVKDIALHTVKVQNWDNTVT
TVPTYKLFSESYRNYRHMFESGGRRIKRTLRLDAASVRFMNEEEGGRLKRFVLLRDYLQAKEDALLEANRQLGELAEVPA
NRRRLTNIGTFRGYALAYLRQHPEVRQDIAMMVRMMEPQPNGIPIEIYCFTAITAWVEYERIQGDIFDHLLAILPELGLR
LFQEPSGSDLGNLAGGMREAALHEFRREQVAAGEAPLALRGDGAAPVR
>SEQF1086_CAE42979.1 argininosuccinate lyase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MANTSHSSQDQFANKAQAWSARFSEPVSDLVKRYTASVDFDKRMARHDIRGSLAHADMLAAQGIISAQDLADIQRGMQQI
LSEIDAGSFQWLLDLEDVHLNIEKRLVELVGDAGKRLHTGRSRNDQVATDIRLWLRDEIDTLVDLLRQLRHALATVALEN
AATIMPGFTHLQVAQPVTFGHHLLAYAEMFGRDAERLADCRRRVNRLPLGAAALAGTSYPIDRERVARTLGFDGVCRNSL
DAVSDRDFGIEFCAAGALIMTHISRLSEELVLWMSPRVGFIDLADRFCTGSSIMPQKKNPDVPELARGKTGRVNGHLVAL
LTLMKGQPLAYNKDNQEDKEGLFDTADTLRDTLTIFADMAGGIKVKADNMRAAALQGFATATDLADYLVKRGLPFRDAHE
IVAHAVRDCEQRGCDLADLSLADLQAYHPSIGEDIHQVLTLEGSVAARKHIGGTAPERVREEAQRVLAETAGA
>SEQF1086_CAE42980.1 hypothetical protein BP2703 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTVSPLHALTSRRSMKFLRAPAPKQDELEQILQAAMSAPDHGALRPWRFVLIRGDAIGRLADLAIEAVKRSGDKRMTPEK
EKSVREWAAGVPLFIAVAQKISHDNTRIPEQEQLLATGAAVMNILNAAHMLGYGAFWSTGLGTYVEDVQDALGLDAMDYR
FLGFVALGTPGCAVPPAQRPDFREFVSEWQGVTA
>SEQF1086_CAE42981.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE42982.1 putative molybdenum-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTYKFRIGLRPQWVLEGGEGAAGQPLQDMLALLAAIDDSGNIAGACKTCGLSYRHAWGVLRRFEALFGMPLLVTRRRLGT
ALSPFAQRLLWANRRIDARLMPTLESLASELQEELERLLPESGPHLRLHASHGFAVEALMQHLDTRLPGVELRYRTAAEA
LASLRGNDCDLAGFQVPQGEFEAPILRLYAQWLDPDEHLLIHLAVRNTGLFVVAGNPKGIGGVADLARADVRFVNRQAGS
STYYLVNLMLQRAGVAPAAVQGYQNNEFTHMAVAAHIASGMADTGIGVETAARRFGLDFIPLVRERYFFAIRKTALESAA
MRALLEGMRSPEYRGFVGQLPGYDASDTGAIQTLEQAFARDFRPRAAL
>SEQF1086_CAE42983.1 molybdenum cofactor biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKVIFLTDRRQADLAAPSADLPPAGEPARDVRARPLRDLRISVTDRCNFRCTYCMPREVFDSSYAFMPHSALLSFEEIT
RLAAQFARLGVEKIRLTGGEPLLRKNIETLVGMLAELRTPAGRPLDLTLTTNGSLLARKAAALKQAGLSRVTVSLDALDA
ALFARMSDSNFSPDDVLRGIDAAAEAGLAPVKVNMVVRRGLNDGEILPMARRFRGSGHILRFIEYMDVGSTNGWNLSEVV
PSDEVLARIAEHHPLAPLDTPVMGRVAERWRYDDGGGEIGAISSVTHAFCSGCTRARLSPEGRLFLCLFASHGHDLRAPL
REGADDDSLARILTGIWGQRDDNYSERRGQGGGAADRIEMSYIGG
>SEQF1086_CAE42984.1 molybdopterin cofactor biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLEFDQAQQLLAQAGAPVAGTENVALEQADGRVLATDLAATVDLPPADNSAMDGYAIRLADYQAGARMPVQQRAYAGDMP
QALIPGQATRLFTGSLIPAGADTVVMQEDAREADGQVEITQAPTLGQWIRKRGDGTTAGRPLLDAGTLLHAGHVGLLGTQ
GLASVPVRARLRIGVLTTGDELVAPGQPRAAQQIYNSNGPMLAALVRGMGAQVSHVLHARDDEDALRAALCTLLADSDLV
LSSGGVSVGERDLVKPVLEALGGELGLWKVRMKPGKPVALAHIDGKPVVCLPGNPVSSYAVFALLVSPLVRRMQGRAELY
PTVSRLPLRTERPRQDSREEFLRVQWRATEDGAGELQPFGNQDSAIITSVPWSTGLARLPAGVPVNDGERVGYYDLRHWL
T
>SEQF1086_CAE42985.1 molybdenum cofactor biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNDAKQVSLVCAILTVSDSRSAGDDTSGNMLAESLAHAGHMCVRRDLVKKDLYQIRRVISEWIADPEVQVILVSGGTGFT
PRDCTAQTIEPLFDKTIEGFGELFRQLSYEEIGSSAVQSSALAGTANDTVIFCMPGSNHACKLGWNRIIREQLDDAHKPC
NFAMHYRAKPDAD
>SEQF1086_CAE42986.1 molybdopterin converting factor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNIMVIVQEADFDSAALLAALRERVGGQAGAIVTFVGYVRDFAPEQATETLYLDHYPGMCERELETIAATARERWDLAGT
VIAHRVGALPRGAQIVFVAAASAHRGDAFRGCEYIIDALKTRAPFWKRETLAAGDSFWVEQRQSDADRTQSWDDPGTPTK
EHP
>SEQF1086_CAE42987.1 molybdopterin converting factor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGATIKVLYFARVAELVGKRTEDWPLAETVTGAQLLAALAARYPQLEPAERLKLAVNQTHVKVGASVRPGDEVAVFEPV
TGG
>SEQF1086_CAE42988.1 molybdenum cofactor biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTTPTLSHLDESGQIRMVDVGHKTDTDRVAIARGSVRMNATAYGLLTQPGQGKGEVLNTARVAAVLAAKRCAELIPLCH
SLPLAFVGIDFELDEAAHSVHIRATCRTQYKTGVEMEAMTACSVAALTIYDMCKAADKGIVIEQIRLQYKAGGKSGEWRN
D
>SEQF1086_CAE42989.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPVRMPGVRLTRRTVKVLLATVLVVLLLAGLAAWQVPRIVRGALTQDVSAMLGRDVSVGKIRFNPFTLTLRAHDLALAQP
EGAAPLLQVAELDVSASWMSLFWFAPVVDSLVVRQPKVALVREDVTRFNFSDIQKKVADMAAQSPPEPEPESGPPRFSLN
NMVLEGGEITLDDKVSGRQQRIDEIALGVPFISTFGYATDIDVQPRVHMRINGSPFDLTGVARPFDTVPSSTLDVSFAGL
ELEKWADAWPLPLPVKLERALLDSDLQVLFEQPKDAAPRIKVVGELGLRQLDVRESSGDVLAQWSALAVRRIAFEPMQRS
LYVGEVELWSPQIQTRRYADQRLNWLDIAQKLQKLGAGDAPAKPTAASAPAPAPAPAPAQAQAQAPESATPAAAQAAAAP
QASAAAAAPDAWHVVVDAINVRDAELHLRDAVTKLDYVMNGVGATVEGLELPQPPDRPIGLWLTMDSTIDGSWLRAKGSL
TLEPLNLDVKVELDRLALARLAPAVRASAPILVEDGRLGAQARVRVAQRDGATQVVAEGAALRLSDLSLRDESVKPAVPV
SVKQFEARFDRLALDAQPSPFTLKADGVQGEGALAMQGSLTAQPLALKSSVDLARLDLAPFAPYIASSLNATVRAINLSA
RGDAEFAAAAGATPMKAAWRGALDVNDLDLADRVNRDDFMQWKRLGLAGMQVSVNGDAFAANLGDITLDDFYGRVLLNAE
GRLNVMDLVAEPGQAGCSITQDTQTRARAAAPAKPGPMPDIAIGSVTLKGGKVTFTDRFVKPNYTAELSRIEGSVSAVSS
RQPKPAKVNVAGRVYTSAPFSISGTVQPFAQFLSLDLKASAKGVDLPRFTTYSAKYVGYPIKRGKLSLDVQYQIKDRALQ
ASNRVVLNQLTFGDKTDSPDAVKLPVLLAVALLKDSRGNIDINLPISGSLDDPQFSVGGIIVRVLVNLVVKAVTSPFTLL
ASAFGGGEELSYIEFDPGSAALTPEAESRIETLAKALNDRPGLKLDVAGRADPASDEEGLRQAWVERQIRLAKARDTGGR
GKKPPPDGVEVAPAERAQYLEEVYDDTKIEDKPRNFIGMAKSIPAEQMEALLRGAAPLGAEDLRKLADARAQAVYEKLQA
EGPADRIFVVAPQLDADGIKDDGKPTRVDFSLK
>SEQF1086_CAE42990.1 putative hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDADPQFDSLLPPLTLTRRGFVVTSLAAGFSLAAGAAAAQSAIHTDAAGLTAGKVDIPTPDGKMPAYRAAPAGKKDLPT
LLVVSEIFGVHEYIQDVCRRLARLGYQAVAPELFARYDDPTGYTDIGRLRAEVVGKAGDRQVLADLDAAAAWAAANGGNA
SRLGILGFCWGGRIVWLYAAHNPGLKAGAAWYGQLGGQASELKPRSVLESIGDLKAPVLGAYGGKDAGIPLSDVDRMRLA
LAKGPQAARDSRIDVYPEAPHAFHADYRPSYRKAEAEQAWQRMLDWFGQHGLAA
>SEQF1086_CAE42991.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRHFLAALLLAAASGAACAQAGADPAGQAIFDQIVLTSGAANGAARTCGASPPDLAQHAETWRLNLRRYADEYHYAFDS
FDERYARGQQEGAEMMADMRASGVDGCTGALASFQRERAMTYDEMKQAIAEATDGLPEDQPAD
>SEQF1086_CAE42992.1 AhpC/TSA-family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTIKAGDRVPDGTLTEFIETETAGCTLGPNAFQVADLVKGKKIALFAVPGAFTPTCSAKHLPGYVEQAAALRAKGIDEIW
CVAVNDAFVMGAWGREQQAGGKVRMLADGSALWTTALGLELDLVQRGMGVRSQRYSALIDDGVVKQLNIEAPGKFEVSDA
ATMLAQA
>SEQF1086_CAE42993.1 putative membrane transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLTTISSFSSLYFATLLMLIGTGLFNTYMGLRLTAQSVNEIWIGALIAGYYLGLVCGARLGHKLIIRVGHIRAFVACAAV
ATSMILAQALVDHLPLWLLLRLISGIVMVTEFMVIESWLNEQTENHQRGRVFSVYMVVSGLGTVLGQLALTAYATLDDGP
LTLVAMCLVLCLVPIAVTARSHPPTPLPAPLDLRFFASRVPLSLTVLFVAGNLSGAFYGLAAVYAAKHGLSTSQSAIFVA
AAVTAGLLSQWPMGWLSDRINRAGLIRFNAAVLVLLPVLMWGWIVLPYWAMVALSCVFGVLQFTLYPLGAAFANDHVEPE
RRVGLSAILLMTYGVGACLGPLIAGVMMSLGGPGMYYVFISACAVILVWQVRPARVTGAHQVDEAPVHFVPMPDTLQSSP
AAVALDPRVDPDVDITMEMADPGPDVVEPPAPAGPPAPAADSESTSAPQAGEQAAPDDAAARRTGT
>SEQF1086_CAE42994.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNQGLLYLAASVACSVTVAVLLKLARRHAIDVRQAIAVNYAVAAALCWLLLRPDAQALRQAMQGVPVLAALAVLLPTVFV
AMARSVRYAGIVKSDAAQRLSLFIPLLAAFALFGESLTARKLAAIALAFAALACLLRRRAPAGAAADDAPDDRRAAWMWP
LAVWAGYGVIDILFKQLARSGTAFSAGLLATFVAAGLLTLAYLCIRRTRWQARHALAGVALGLANFGNILTYVRAHQSLP
DHPALVFGAMNMGVITAGTLVGALAFRERLSALNLAGLALALAAIAAMLPW
>SEQF1086_CAE42995.1 biotin synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEPRPMHTAYVPVPAPVRPPSAERWPLAAVAELFELPFLDLLHRAQQVHRQHFDANTVQLSSLLSIKTGGCPEDCAYCPQ
SAHYDTGVDADKLMPLDEVVRAARAAQANGAQRFCMGAAWRSPKPHHLEAVAEMIGAVKALGMETCVTLGMLRDGQAEQL
KAAGLDYYNHNLDTAPEFYGKIISTRTYQDRLDTLQQVREAGINVCCGGIVGMGESRRDRAGLVAQLTNMEPYPESVPIN
NLVQVEGTPLAGAETLDPFEFIRTIAVARITMPLAKVRLSAGRETMSDSEQALCFMAGANSIFYGDVLLTTGNPQVEADR
RLLQRLGMRAEGLPCAAGQA
>SEQF1086_CAE42996.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRIATALILSASVFGVAQAGELDYPPAIESASALSHTQVQAELQAARTQGLMAAGEQDYPIAAYAAASTVSREQVRDEL
AAARAQGLTESGELAYPPVAG
>SEQF1086_CAE42997.1 putative TetR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDTPSTNTTREQLLDYAQKLIRTRGCNGFSYRDLADHVGVKTSSVHYYFPCKDDLLYEAVENYTGSALETLRGISPTLPA
KERLDAYIAMVESHSCQADQLCLGGMLAAELNTLPERVRAALQAFFTVEENWLAKVLADGAREGTLRYASTPEKAARALF
ATVQGCLLGARLFQRPPELREALGALYVQCGASPAH
>SEQF1086_CAE42998.1 transposase for IS1663 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF1086_CAE42999.1 putative membrane transport ATPase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPSTTRDLALDMPSGQRTDAHGHDHAGHDHAGHDHAGHDHAHDHGIPACCGHGHGQPAAPAAAPAWQPGPGQQVTRVRIG
QMDCPTEETLIRKKLASLPEVHELDFNLMQRVLIVLHADGALDRIDAAIRSLGMTPEPLAGDAPATPAGAAAPSRGWRLL
AAGGVLAALSELAHFTGQPVYVAAALALAAILACGLSTYRKGWIAVRNGNLNINALMSIAVTGAMLIGQWPEAAMVMFLF
NVAELIEARALDRARHAVRGLLDLAPQTATARQPDGSWAEVPAARLRPGDLVRVRPGERIAADGTISEGQSAIDQSPITG
ESLPVEKGPDDDVYAGTVNASGSFDYRVTAAAGNTTLDRIIHAVEQAQGARAPTQRFIDRFSRIYTPAVVGLAVLVALAP
PLLLGHAWLDSVYRALALLIIACPCALVISTPVSVVSGLTAAARRGILIKGGVYLEEGRKLRWLALDKTGTLTQGKPVQT
DLELLHDASAGGRPALRAAVSLAARSDHPVSRALAQADHALDAPLDEVNGFAALPGRGVQGEIGGERFQLGNRRLMRELG
VSTPDIEARIDAYEAAGKTAIALADGQRVLLLAAVADTLKASSAAAVADLHRLGVRTLMLTGDNTRAAQAVAAQAGIDEA
RGDLLPQDKLDAVEAKLDPALRVGMVGDGINDAPALARADIGFAMGAAGTGTAIETADVALMDDDLRKIGTFVRLSRATH
RILTQNIVLALGIKAVFLVLAMAGQATLWMAVFADVGASLLVVANGLRLLRAGRHQAS
>SEQF1086_CAE43000.1 putative MerR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKIGELARTAGTTVETVRYYEKEGLLPAPERGLNNYRSYGEAHVERLRLIRNCRALDMTQDEIRTVLALADNHEAGCAPI
NQVFDEHIAHVDARIAELTQLKAQLGELRQRCASARPDAEDCGILHGLSEMQVEERPERHTHLG
>SEQF1086_CAE43001.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHT
>SEQF1086_CAE43002.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTLYTLTRGDAPLVVNIPHGGTWVPAELRPLMQAEALGVPDTDWHVDRLYDFVRARGVTLMAATHSRYVIDLNRDPDGG
VLYPGASNTELCPTTRFDGGPVWKDEAAGHLLLDVAARRRQYFDPYHAQLAAELARVQARHGYAVLLDGHSIISHCARFF
DGKLPDLNLGTADGASCPPGLQQAAAQALQADGFTAAVNGRFKGGWITRHYGRPAEGYHALQLEMALSAYMTEQAPFHWQ
PERAEPLRQVLETLVAALLAWRAA
>SEQF1086_CAE43003.1 putative oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTEKTAIVTAGGSGMGAAAARRLAADGFRVAILSASGKGEALAAELGGLGMTGSNLEPADMQALVDATLQRWGRIDAVV
NSAGHGPKGALLEIDDAGWHAGMDYYLLNVVRIARLVTPVMREQGGGSIVNISTYATFEPEAAFPTSGVLRAGLAAFAKL
YADQYAADNVRMNNVLPGFIDSLPEKEDRRARIPMSRYGLAEEVADLIAFLASSQSSYITGQNIRIDGGITRSV
>SEQF1086_CAE43004.1 exported SurF1-family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTHPTQQNAAGGREPAPTRRPRGAATLIILAALAAALFAGACALGVWQIHRLAWKRNLIAQVETRAHAPATPAPVPADWP
GLSNANAEYRRIAASGTWHYAGQTLVQAATELGSGYWVMTPLRLDGGGTVLVNRGFVLPEWRRQQSAGDAARPDAPARVE
GLLRMGEPAGGFLRENKPAAELWYSRDLPAIAARRGLGEVAPYFIDADAAAGAPRNPAQAPVGGLTVLSFPNNHLGYAIT
WFGLAAMVLAGAAIVARHELRARRRG
>SEQF1086_CAE43005.1 cytochrome ubiquinol oxidase subunit IV [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSERTEHAADLPPPHGAGHHHEDDDGPHGTLASYLTGFVLAAILTAIPFWLVMDGVFASSRTTALVILAFAVVQIVVHLV
YFLHMDAKSESGWNMLALIFTLVLVVITLSGSIWIMYHLNSNMMPMSVHDVRNMP
>SEQF1086_CAE43006.1 cytochrome ubiquinol oxidase subunit III [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSEPTATTLPPSAAPDPERLFYVPGEHHPKNGTLLGFWVYLMSDCLVFACLFATYGVVGRNYDGGPTGAELFDLPLVAVN
TSLLLLSSITYGFAMLEMRRQRIGATQAWLAVTGLLGAGFLGLELYEFAHLIHQGAGPQRSAFLSAFFTLVGTHGLHVTF
GIVWLVTLMVQVARHGLIPENRRRLMCLSMFWHFLDLIWVGVFTFVYLMGVLP
>SEQF1086_CAE43007.1 cytochrome ubiquinol oxidase subunit I [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDQPDQTLLLGRLSWEAIPYHEPILLVTFIVVALGGIALLGAITYMRAWGYLWREWFTSIDHKKIGIMYVVLGIVMLLR
GFADAIMMRLQQAIAFGDNLGYLPPHHYDQIFTAHGVIMIFFVAMPLVTGLMNYIVPLQIGARDVAFPFLNNFSFWMTAT
GAVLVMMSLFVGEFARTGWLAYPPLSGILHSPDVGVDYYIWTLQIAGVGTLLSGVNLLVTIVKMRAPGMTLMRMPVFTWT
ALCTNILIVAAFPVLTAVLALLSMDRYVGTNFFTADGGGNAMMYVNLVWIWGHPEVYILILPAFGIFSEVVATYCRKRLF
GYASMVYATVVITVLSYLVWLHHFFTMGSGASVNSFFGITTMIISIPTGAKIFNWLFTMYRGRIHFEVPMLWTLGFMVTF
VIGGMTGVLLAVPPADFALHNSLFLIAHFHNVIIGGVLFGLMAGITYWFPKAFGYRLDPFWGKCSFWFWLVGFYLAFMPL
YVLGLMGVTRRVNHFEDASLQIWFQAAALGALLIALGIASFLIQLVVSYRRREALRDDTGDPWDGRTLEWSTSSPPPAYN
FAFTPRVHDLDAWWQMKQYGYARPLQGFVPIHMPSNTWAGIVLTGLSGVLGFALIWHMWPLVVLAFAALIGVTIAHTFNY
QRDHYVPAEEVVRCEAARTALLSRHV
>SEQF1086_CAE43009.1 putative membrane transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTTTQHPGYAPATPHPGSSGGASHSHVAPGEIAVGVVIGRASEYFDFFVFGIACVLVFPSVFFPFESELDGMLWAFVIF
SFAFIARPFGTALSMAVQRRWGRGAKLTAALFLLGTATCGMAFLPGYDAIGMYAILLLSLFRCLQGLALGGSWDGLPSLL
ALNAPAGRRGWYAMLGQLGAPIGFMIASALFLFLISTLARDDFLDWGWRYPFFVAFAINVVALFARLRLVVTEEYTQLME
EGELEPIRTTEMLREQGYNMLIGAFAALASYALFHLVTVFPLSWIAAGASQMSGDVLVVQIAGAALAIVCTLASGWLADR
IGRRTTLGLMALLIGVFALFTPWLLGGGPLAQDAFILIGFALLGLSYGQASGTVTANFIRRFRYTGAALTADMAWLLGAA
FAPLVALGLSARFGLVAVSVYLLSGVVCTLLALRVNRLLETRD
>SEQF1086_CAE43010.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43011.1 putative chelatase (Pseudogene) [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLAVLASRAIAGWQAPAVRVETHLGSGLPAFAIVGLPDVEVRESRERVRAAIQNSGFDFPPGRITVNLSPADLPKASAR
FDLPIALGILLASGQVAASAAQTAALPDCVWAAELSLSGALVPLAAPLALALAVAREQPGATLVLPAGSAAVAAWVPGIR
VLAAHTLGEAAAYLAGHAELAPAERRSWPEAEPGPCLSDVRGQPAARRALEVAAAGGHSLLMCGPPGAGKSMLAQRLPGL
LPPLEQRQALEVAAIAGAGGAPEVLRGQPPFRAPHHSASAAALVGSGARPRPGEISLAHHGVLFLDELPEFERRALESLR
EPLETGKVVISRALHSVEYPAVFQLVAAMNPCPCGWRGHASKACRCTPDQVRRYAARVSGPLVDRIDLWIELPATEPQWL
AEPPGEPSLPVRERVVRCRQRQLARQGCLNAKLSGPALDAHCALGAAARTLQQQAMRRLGGSARAAHRALRVARTLADLA
HEPEIGAAHIAEAVQYRRPA
>SEQF1086_CAE43012.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRTQQWMEDLQKNISDLIARSPAADVERNVRAMMTQTFARLDLITREEFEVQVDLLARARTRVDQLSAQVQQLEARLAA
LEAGKPQA
>SEQF1086_CAE43013.1 nitrogen regulatory protein P-II [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLVIAIIKPFKLDEVRMALSDIGVQGLTVTEVKGFGRQKGHTELYRGAEYAVDFLPKLRVEAAVPDHLVDQVIEAIEQS
ARTGKIGDGKIFTAPLEEVIRIRTGESGEAAL
>SEQF1086_CAE43015.1 autotransporter (pseudogene) [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNDRKSNSMSPAARYLRFGVVAVAGVAAGALPSSDVDAQAAPAAAEVAKIEALSDADIYSDYEHEHGIVMTPDGKDDYIS
YRSAESGRPKPPPPLSNFKPLGNDVVAERIRVEVHGDETLGVYVDSEHRSLTVRDSTIDAYGKPPSVDSPDYYGAAAVYA
GTLNIENSTVHHNYAAQPFEDAVGVGVTSLGDKAILNVTDSEVSGARGAVIGWGGEATFTDSVLRGSAFGLYAEMCDTCR
DDDGTSPSIRVQGGVVQGGMGANNVAVVATGSGKVAIENAELLGASGMYATFGAQVDMKGGRILAHNTNILGSQGYADGP
YGGVVVTEDGQVNLEGAKVSATGLGAAGLWLLGDKDTSPRASLRNTDVHGEVAAIALGFNGEANISGGSLSVEDGAVLTT
LTPDAVEYYYDYALSMEHLPADAPLTPVRVTLSDGARASGETLIAHGGLLPMTLRLSSGVDARGDIVTLPPSAPPDSAEQ
PDAEPEPDAELEPDAAAQSDAKANARVMAQVDGGEPVAVPIPAPSHPDAPIDVFIDSGAQWRGMTKTVNALRIEDGTWTV
TGSSTVNSLHLQAGKVAYATPAESDGEFKHLRVKTLSGSGLFEMNASADLSDGDLLVVSDEASGQHKVLVRGAGTEPTGV
ESLTLVELPEGSQTKFTLANRGGVVDAGAFRYRLTPDNGVWGLERTSQLSAVANAALNTGGVGAASSIWYAEGNALSKRL
GELRLDPGAGGFWGRTFAQKQQLDNKAGRRFDQKVYGFELGADHAIAGQQGRWHVGGLLGYTRARRSFIDDGAGHTDSAH
IGAYAAYVADNGFYFDSTLRASRFENDFTVTATDAVSVRGKYRANGVGATLEAGKRFTLHDGWFVEPQSEVSLFHASGGT
YRAANNLSVKDEGGTSAVLRLGLAAGRRIDLGKDRVIQPYATLSWLQEFKGVTTVRTNGYGLRTDLSGGRAELALGLAAA
LGRGHQLYTSYEYAKGNKLTLPWTFHLGYRYTW
>SEQF1086_CAE43016.1 putative TetR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRKSAPSSTAAPAPKLAADRIRATARELFYREGIRAVGVDAIVSAAGVTKPSLYRSFSSKDELAASYLRDYETEFWSRF
DAGAQRHPDDPRAQLRLYLESLAERAANAGPYRGCGLSNAAVEYPDPDHPARLVAEAHKRELRRRLIDMARRMGAREPEV
LGDGLMLLIEGAFISGQLFHGDGPARHVARLADRLIEASL
>SEQF1086_CAE43017.1 putative membrane transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSITRLPPPFRHLGQKYAFVVVAVIFFSLLVSAGLRSTPSVLIVPLEQAFGWSRSTISLAAAIGIFLYGLAGPFAAAAME
HFGLRRVLIGALLLMAASSAASAFMTESWHLLLTWGVFSGIGSGAVAVVLGATIVNRWFTTRRGLMMGLLTASTATGNLL
FLPVLAALAASGDWTRVVWAVAAGAALMAPLAWWLVPDRPADVGLRSYGSAPDAPEPSVAPRTGLLAATFGALRRAARTR
TFWYLFATFFVCGFTTNGLVGTHLIALCGDHGIAEVQAAGLLALMGIFDLVGTTASGWLTDRYDPRRLLFVYYSLRGLSL
MYLPYSDFSFYSLSLFAIFFGLDWIATVPPTLRLTTEAFGDRDAPIVFGWIVAGHQLGAASAAWMGGVVRETTGSYLMAF
VLAGSTGLIAAVIALMINRKPRPTALAEA
>SEQF1086_CAE43018.1 putative ABC transport protein, ATP-binding component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTASQALLELRGLQVAYGGIRAVRGIDLRVDPGELVCLIGANGAGKSTTLRAICGLVPLAGGQVLYDGQSIGGQPSFALV
RKGLVMVPEGRGIFGQLTIEENLAMGAYVRRDAAQVRQDTERVFTLFPRLAERRRQAAGTLSGGEQQMVAMGRAMIARPR
LLLLDEPSMGLAPLMVDKVFEVVRTIAAEGVTILLIEQNARLALEHADRGYVMESGEITLSGPAREMLHDPKVRAAYLGE
VEA
>SEQF1086_CAE43019.1 putative ABC transport protein, ATP-binding component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRILHAQGLGKRFGGLRALSEVSFDIEAGEIYGLIGPNGAGKTTLFNVLTGLYVPEEGQCEFNGMSLIGKKPHEVAAAG
LARTFQNIRLFANLSAIENVMIGRHVRTHAGVLGAVLRTRAERVEEAAIERRAQELLEYVGIGHRANDVARSLPYGDQRR
LEIARALATDPRLLALDEPAAGMNASETVVLRQLIEKIRTDGVTVLLIEHDMKLVMGLCDRVLVLEYGKVLSMGRPAEVQ
RDPKVIEAYLGAGAAHDPELHTTEQAP
>SEQF1086_CAE43020.1 putative ABC transport protein, ATP-binding component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRQPNKSGLSARNLVGIALIGIVLAVLPFVLGMAGQSWVRILNFALLYVMLALGLNIVVGFAGLLDLGYIAFYAVGAYT
WALLASPHFGLHLPFWAILPMALGVACVFGVLLGAPTLKLRGDYLAIVTLGFGEIIRIFLNNLNAPVNITNGPQGINRID
AFKVGDFVFGRTETILGIRFTGPEKYYYLLVLLTLLIIVVCVRLQNSRIGRAWEAIREDEIAAKAMGINSRNIKLLAFAM
GASFGGVAGALFAAMQGFVSPESFSLTESISVLCMVVLGGMGHIPGVILGAVILAVLPEFLRAVVEPAQHLLFGAVVLDP
EGIRMLLFGLAMVCVMLFRPAGLWPSAVRKRELSSTRQGGAA
>SEQF1086_CAE43021.1 putative ABC transport protein, inner membrane component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDIFTQQIINGLTLGSVYALVALGYTMVYGIIGLINFAHGDVVMIGAMAATMVAAALVGGDPSTSAFAVLGAGLLVSVPL
CMAVGWTAERVAYRPLRRAPRLAALITAIGVSIILQNVAMMVWGRNYLNFPQVLTPTVFEIGGARMSMLQIAIVVIAALI
MGALLLVVHKTRLGTAMRATAQNREVAGLMGVNINTVISAAFLIGSALAAIAGMMVTTYYGVSQYTMGFMLGLKAFTAAV
LGGIGNLVGAMAGGLLLGIIESLGSGYIGDLTGGFLGSHYQDVFAFVVLVMVLIFRPSGLLGERVGDRA
>SEQF1086_CAE43022.1 putative ABC transport solute-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLRTPIKMLAAGIAAACLAGVAQAADIKFGFAAPLTGPQSHYGEDMQNGLTLALEEANQKGVTVGGKPAKFVLVSRDDQ
ADPRVAVQVAQQLVDQEVNGILGHFNSGTTIPASRVYHDAGLPQIAMATSPEYTNQQYETTFRMMTSDTQQGAAVGKFMV
EKLNAKKVAIIDDRTAYGQGLADEVEKAVKAAGGQVVRREYTTDKANDFTSILTNIKGVAPDAIFYGGLDAQSGPMKRQL
ATLGLKAPLVSGEMTRSDTFIKLAGDAADGTYASLAGVPLEKMAAGKEFAKRYEERFKKAPGVYAPYAYDGAWNMITAIE
KAGSADPSKYLPELAKLSRKGATSEHIAYDAKGDLKEVAVTIYEVKNGKWEMVETMVSQAN
>SEQF1086_CAE43023.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI
>SEQF1086_CAE43024.1 bifunctional proline oxidoreductase/transcriptional repressor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MASTTLGVKVDDALRDRLKAAAQKLNCTPHWLHKQAILSYLDRIERGHLPAEMAHLGRDERGEDEDAGASADAMPPFFEF
GQDVQPQSVLRAAITAAYRRPEPECVPLLLGQARVAGPEKVHAMASKLVHALWAKRSGGGVEGLIQEFSLSSQEGVALMC
LAEALLRIPDRATRDALIRDKIVHGDWRSHMGGSQSLFVNAATWGLMITGKLVAVSSEQSLSKALTRLIGKGGEPLVRKG
VNMAMRMMGEQFVSGQTISEALANNRKMEARGFRYSYDMLGEAATTAADAERYYAAYEQAIHAIGKAAAGRGIYEGPGIS
IKLSALHPRYARAQRDRVMAELLPRVKALTLLARQYDIGLNIDAEEADRLEISLDLLEALCFVPELDDWNGIGFVIQAYQ
KRAPFVIDYVIDLAKRSRHRLMVRLVKGAYWDTEIKRAQVDGLEGYPVYTRKVYTDVAYLACARRLLAAPEATYPQFATH
NAYTLSAIYQMAGQNYYPGQYEFQCLHGMGEPLYEEVVGPLAQGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFV
NLIGDDSITVEQLVADPVEAASRIVPLGAPHEKIPLPRELYGSVQQGARANSAGLDLTNEHRLGSLSAALLASAATDWRA
WPMLGEGDPGWDPASAVEVANPANLRDIVGHVMQATPQHVEQALRDAANAAPIWQSTPVPERAQCLRRAAQLLEEQMQTL
LGLIVREAGKSLPNAIAEVREAVDFLRYYADQAEREFDNDTHRPLGQVLCISPWNFPLAIFTGQVAAALAAGNTVLAKPA
EQTSLIAGQAVAILRAAGVPAGAVQLLPGRGETVGAQLVASPQVRGVMFTGSTEVARIIAGALAERLDDQGHTIPLIAET
GGQNAMVIDSSALAEQVVFDVLTSAFDSAGQRCSALRVLCLQEDSADHVLTMLRGAMRELRVGNPDRLSVDVGPVIDAEA
RNGIQGHIEAMRSSGRPVDQVELAGECRYGTFVPPTLIEIDHIGELTREVFGPVLHVLRYRRDDLDGLIEQINATGYGLT
FGVHTRIDETIARVTEQVHAGNLYVNRNIVGAVVGVQPFGGEGLSGTGPKAGGPLYMYRLLATRPAGLPPALDPAAPMPQ
ALALPGPTGETNTYRVEPRGAVYCVAATEAGARAQWAVVSQTGNHAWFADTPAARAWIDGLDARLREQAALLEDSEFDEA
DFQAVLFEGDGDALRALNMRIAQRPGPLVSVHGLSADALAAGASYAPDRLLAERSISVNTAAAGGNASLMTIG
>SEQF1086_CAE43025.1 lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKSTVARCAPLLIATILAGCGASPPARYYTLQPPGATQAVQAGVAAAPFMIEILPVNVPAQADQPQLMVRTGDGTVAPLY
SERWSAPLPDEFRAALSDTLTRELGAPDVQVIKPASGTPVWRVQVDVQRFDLVAGGPSLLDATWRVRPVNLVAPALVCRT
RVDVPAGGERDTAALVQAQQRGTALLARTIASAIRSQGQSAEAGGPEVQVLGCSRNDAKTEG
>SEQF1086_CAE43026.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAESTPPPQEPGTPIAAPQIARKQKSRISWIWLVPIVAALAGLSLVVRTIMQAGPEITILFDTAEGLEVGKTQVRYKDVN
IGVVQGIHFNEDRSKVVVEAELAKEVSNLARDGTQFWVVRPRLGISGVSGLGTLLSGAYIGVDAPPDKEGGTDRASKFEF
VGLELPPAVTHDRAGKRFMLSATDLGSLDIGSPVYFRRIPVGRVIGYKLDDSGRVVNVEVFVDAPNDRFVTDSTRFWNAS
GVDVAVNASGLKVRTQSLVSLAVGGVAFESVSARQGEPVKADTRFELYESETAAKANPDDQPFPIRMRFDQSIRGLTVGS
PIDFQGITLGEVTRIAIDFDNAKKRFFAVVDATVYPERIGRVFDEIRARTEASSGSHAAGQLLSIMIKYGLRAQLRTANL
LTGQLYIVLDTFPEAPPVAFVPGDDPVIIPTIPGQLDQLQAQISSIVTKIEKIPFDQIGTDLRATLASTAKLMNRLDKDL
APEARAVLSQARQSLVDINNMLAPDSGLPANTERAMQEMSRAARSLRNLADYLQTNPEALLKGRGADPIPGAGPVRN
>SEQF1086_CAE43027.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLSNWLALALAALIVFVLANAYPVASLEVQGMVQRASLLDAIRVTWQQQHWVVAIMTGLAGFGMPLVQLMVLLWVLGPL
AAGRLPVGFRGAMRFLGLLRPWSMVQVFLLGVVVSVVKLAGMAAVKPAVGLAGFAALTVLLTILGRLSPHVLWRYAERAG
LVDVHVPRSGPGMVLTGCHVCGQVQALPAGHDDEALHHCRRCAAQLHLRKPDHLARTWALLLAAVVFYIPANILPVMSVS
SVVGDSAHTILGGVVELWEMGSWDIALIVFVASIMVPLTKLLALSLLALTLQRGSTANLRQRTRLYQMVEFIGQWSMLDV
FVVIVLAALANFQGLMEISAGSGAASFGMVVILTMMAAMSFDPRRSWDLESAPAPHVHDALHAHSSAHGAAASDQPST
>SEQF1086_CAE43028.1 ATP-dependent clp protease ATP-binding [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MISQELEVSLHMAFVEARSARHEFITVEHLLLSLLDNASAVEVLRACAANLDDLRRNLRQFVTENTPVIPSGAAEVDTQP
TLGFQRVIQRAIMHVSAGGTGKKPVTGANVLVAIFGEKDSHAVYYLQQQGVTRLDVVNFLSHGITKQPQEESSALPKEQQ
ASGEEPGAESRQSPLDQYANDLNAAALAGRIDPLIGREHEVERVIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAWRITRG
EVPEVLQTAQVFALDMGALLAGTKYRGDFEQRLKGVLKQIRGNPDAILFIDEIHTLIGAGSASGGTLDASNLLKPALSSG
QLKCIGATTYTEFRGVFEKDHALSRRFQKIDVPEPSVEQTVQILRGLKSRFEEHHNVRYSAAALSAAAELSARYINDRHL
PDKAIDVIDEAGAAQRLLPRSRQKKVIGKGEIEHIVSKIARIPPQSVSNDDRSKLATLDRDLKTVVFGQDEAIGALTAAI
KMARSGLGKPDKPIGAFLFSGPTGVGKTEVARQLAFTMGIELLRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAIT
KQPHCVLLLDEIEKAHPDIFNILLQVMDHGTLTDNNGRKADFRNVILIMTTNAGAEILNRPAIGFANERVAGDEMAEIRR
MFTPEFRNRLDAIIPFSALSREIILRVVDKFLMQLEDQLHERRVAAVFTEKLRDHLAKEGFDPLMGARPMQRLIQDTIRR
ALADELLFGKLVDGGNVTVDLDDAGKVVLGFEAPGKPSSNAADKQEVELID
>SEQF1086_CAE43029.1 penicillin-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTFRRLAGWRRPALAAAVLAGGVVMALLALDRLFPLPRFGSDGAQVVVAADGTPLRTYPSRDGVWRYPVGPGQVSPHYLE
TLLTYEDRWFYWHPGVNPFALARAGWQWAAHGRIVSGGSTLTMQVARLLDPELAGQPSKTLSAKLRQAWRAIQLEMHYSK
DEILGLYLSHAPMGGIVEGVEMGARMWLGKSAADLSHAEAALLTALPQAPSRLRPDRHPQAAQLARDKVLQRMAQRGVWD
AALVADARIENVVAPPLRARWLAPLAAQRLLGEAGPAAGVVRSTLDPDIQSTVEAMLLDRVDALPPKVSMAVLVMDNDSL
EVKAYAGSADFTDDSRYAHVDMVRGVRSPGSTLKPFLYALALDEGLIHSESLLLDAPLSFGGYAPGNFQAAFAGPVSVAQ
ALQRSLNVPAVDLLDRVGPARFASVMLAGGVHLRMPAGAVPNLSLILGGGGTTLEELVGAYRALARGGLSGRPRLRASQP
RIEARLMSPGAAWIVRDILELGGHPDRPLFQGAAAGRQLAWKTGTSFGFRDAWAVGVTDRYTIGAWVGRPDGTPNPGFFG
ANVAAPLLQDIVAALPAGAPVPRTRPPQVQAVVTCWPLGWRLGSAPAGICPERRMAWALDDTVPPSFVGYADTATGPLRI
EGVADGTILRPVPGKRAVTLEVGAQGASGEVWWMLDGKVYRSGAAGQAQTLTLSRNGRYALTVMDGQGRYAGLEFEISGV
TP
>SEQF1086_CAE43030.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGMKKEAWLALGGAVVVAAAVGTGWWMGKGGGQPAATPAAVTAPAAGQAAQPAPQAAQPATGQAVVGSADPFAALNCQP
RQYNDTLSLALTFTQPVDRRTDLSRLIKVVDTGPLAQSDDENAAIERPAPAQAGAAGAKGKQVDGAWAVGDNPRVVYFPY
VRPQRSYAVQWQGDVPAGDGKSTLGAVGHCVVNTQAMPPSFYFASRGVVLPAGQNGGLPVATVNLAEVDVQFLRVEPDRV
PEFFGSVLGIGNDAGADDRDDADDWRYADNRSLKGSVSNWDLDRLHGLTTSVYQGRFLTDDKPNRRHVTFLPIEGVKELQ
EPGIYVAVMSQPGRFRYEYQVTYFYVSDIGLHTRRYAERIEAYTVSLKDGVAIPGALVEVLDGAGKVLAKANSDAQGHVR
IDGDFAKSKVLRASRGKEMTVLALGEPALDLSEFDVGGHPGRSNNLFVYAGRNLYRPGETFHVSVLPRDPDGRPLAAAPV
SATLKRPDGRVVRTALWHPAKDQPGYIEQAIELPVDAQTGAWMLELRIDPAARLPDAAWKFQVEEFLPERMKLQLDSAQT
VLQPGQPWRVDVQGDYLYGAPAAGNRLLSSFQVKRNRYALPQQWPGFIFGDVADDTRRHYEELPESELDDTGAGQLEIDP
HTDGTHSPMSVRVSASLLELGGRPVVRSLERTVWPAPQLIAVRPLFDRDVAREGAPAAFEITRVDASGKVVPVQQAQVRL
YHEERQYYWRFDDQRGWHSGYTENEELTDSRVVDVGERTPLTLNVGWGRYRLEIADPQTGETLRYRFYAGWNAQDADAVG
NRPDRVQLKLEGVPARPGDTVAMTITPPHDGQALVTVEGDRMLWSKWVPVQASGTQVEIPVDKAWKRHDLYVSATVFRPG
SQGDRVTPARALGLAFLPIASDERRLQVSLSAPAKTRPETRATVRVKVEGAAGKAARVTLSAVDVGILNINQYATPDPLD
FFFGKHRYAPELLDIYGKLIEKMDGTQGRLKWGGDAAMRGDSRSLPKKVKLVDLFSGPVKLDDKGEADIALDLPDFNGTL
RLMAVAFTADQFGSADREMTVAAPIVAELNTPRFITPGDQTAIALDVTNLSGATQKITVRLQALDPLAIADGTRTLTLKD
KQRSTLRFVATTTGSYGLGLMRLSVDGEGAAEPVRIVRESVLQVQPAHAPERRVRRVRLNPGEALPAPGDWTSAYFPDSV
SVSMTLSNRPPINVSRLVDGLLTYPYGCTEQTISAAIPWVLIDEAAAERFGLKVYSRADRESRVASALGRLAGMRAANGS
YSLWGDSSSRDVWLTAYTVGFMQDVRDHEFNLAPALLERPRQWLLEQLQQASGGFGTWSPNLRRTLASGRFDENDAAILR
EDHRRFAGLAAAALVLARDGKAPLSTVRQLYDNYQERARSPLPLMQLAAAFKLMGDEGRMKTALDEAMTRSYGINRRAGS
NYLDEWLGDYGSAVRDYALSYALVNQYGLKHDRTEALLDQVGGYLGVRSYLSTQEQMALLLAAGATGAESRTPWQAALQI
GTGELKTLQGRDDHTLALSAGDLAGLQLRNTGSQSMFAEFDVQGTTMAAPAPRSDVIRLKRVWYRPDGTAWNGGTLQTGD
MLVVWVQAEASRLIPDALVVDRVPAGFEIENLNLSQSPDMQDWTIGGRRVAESMADPNIKHREFRDDRYVAATMLGRGKV
DIFYLARVVTPGRYSVPATEAEDMYRPELRAVGDSWSSIEIRDRAPRRP
>SEQF1086_CAE43031.1 hypothetical protein BP2756 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSTLDTQHDVVVEKQPARTAPPPMYQVVLLNDDYTPMEFVVKVLQKFFGKNSEDATRIMLQVHHEGRAVCGVYPRDLAA
TRIAQVSQYARARQHPLQCIMEPT
>SEQF1086_CAE43032.1 putative cold-shock protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDTTATAVQGDNPKATGTVKWFNDAKGFGFITPDDGGEDLFAHFSSIQMNGFKTLKEGQKVSFEIIQGPKGKQALNITS
A
>SEQF1086_CAE43033.1 exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHCPPTPAPMSIAAVLPVLRRIARTRFCAAVLALSVLSFGAAAQHSSSGKPQPRLPTTPLSAGIHIIHAEVADNDDTRRQ
GLMYRTELPGNDGMLFVFEAPDQQCFWMRNTPLPLSIAFIADDGTIVNIEDMAPRTDDTHCSRKSVRYALEMAQGWFARH
GIKAGARINGLP
>SEQF1086_CAE43034.1 putative thiolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAVQAFICDAIRTPFGRYGGALSSVRADDLAAVPIKALMARNPGVRWEELDDVLYGCANQAGEDNRNVARMAALLAGLPI
EVPGATINRLCGSGLDAVGSAARAIAAGQTSLMLAGGVESMSRAPFVMGKADSAFSRNAAIYDTTIGWRFVNKLMKAQYG
VDSMPETAENVADDFKISRADQDKFALASQQKALRAQQSGFFDAEITPVSIAQKKGDPVVVSKDEHPRDTSLEALAKLKG
VVREGGSVTAGNASGVNDGAAALLLADEKAAASHGLTPRARVVGMVTAGVAPRIMGMGPAPATRKVLAQTGLSLAQMDVI
ELNEAFAAQGLAVMRDLGIADDDARVNINGGAIALGHPLGASGARLVTTAINQLQRGGGRYALCTMCIGVGQGIALIIER
V
>SEQF1086_CAE43035.1 putative chloride-channel protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRVSHRTLSVSLLLGGAALVALVSLGFTQLADLALHWNRQWTAAHGWLALIVTPCALAVLCWLTLRLAPYASGSGIPQV
IAGLSLPPGGAQQRLVSLVQALWKIPLTFLAMLAGASVGREGPSVQVGAALMLAWGQLWRRLGVPLRGFHSQELIAAGAA
GGLAAAFNAPLAGVIFAIEELGRGTVLRWQRLVLIGVLAAGFLVVAIAGNNPYLGTFAGQALAHNMLWWTLVCCVVNGIL
GGVFARLLGKGAAGAAPQRWRERVRRHPVATAFGLGLALACLGLLTGGAVYGTGYDQAAALLSGHDGVPDGFGLAKLAAT
VASYWAGIPGGIFTPALTTGAGIGEQISHWAGPGVDTRVLVLVSMAAFLAAATQAPLTASVVVMEMTGSQPMLFWLLVGA
LGASVVSRQFCPRPFYHLAAGRFRRTAVVEAGRKASTE
>SEQF1086_CAE43036.1 superoxide dismutase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAHTLPPLPYALDALAPRISKETLEFHYGKHHQTYVTNLNNLIPGTEFENLSLEEIVKKSSGGVFNNAAQVWNHTFYWNS
LSPNGGGEPSGALADAIKAKWGSVDAFKEAFNKSAAGNFGSGWTWLVKKADGTLDIVNTSNAATPLTTADKALLTCDVWE
HAYYIDYRNARPKYLENFWALVNWEFAAKNFA
>SEQF1086_CAE43037.1 exodeoxyribonuclease large subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTIGLSVTNDVFARDILTVAQLNQAVGQLLERSIPSLWVRGEISNFTQAASGHWYFTLKDSRAAVRTVMFRSRAAQVGFV
PRPGDQVEVRARVSLYEPRGDYQLQADGMRRAGVGNLYEAFLRLKAQLQDEGLFDPQRKRQPARLPRAIGVVTSLHAAAL
RDVLSALARRAPQVPVIIYPAPVQGADAAARLAARVAQANQRAEVDTLLLVRGGGSIEDLWSFNDEALAREVAASDIPVI
SGVGHETDFTIVDFVADLRAPTPTAAAELACVPRGDLLAALRHTAEWLARAQQRRLDQAAQRLDRAAAMLTSPAQRLAHQ
QERLNTLRHRLASAWRGPQGHRVARLDMLAQRLAHRRPDTGRAAERSAALLAQLGRAQARLAAARQARLDTLAAQLRALD
PQHTLARGYAIVRDAAGAIVTDATRLAARDRIEIAVARGRIGADVTDIGTPDGTDGNPALRRG
>SEQF1086_CAE43038.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADESSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43039.1 putative biopolymer transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLNLLREAGWPIWPLLATSILGLALIVERLLALRRSRILPRGLNEQVLEMLRNQQDTPEALARLERNSPLGRVLAEVLRQ
RHLPREELRTAVEDAGRGAAYELGRYVSAIGTIAVVAPLMGLFGTVVGMIEIFGSYAPGASDPAQLARGISIALYNTGFG
ILIAIPAMIVHRYLRARIDGYLHAMEQSAGRLARYVAPARSREARP
>SEQF1086_CAE43040.1 putative biopolymer transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNFRGGRASQDELEINLIPLIDVLLVILIFLAATTSFARFTQLKVVLPEAAAEQEAPPALEIAISQDGHYALNGNLLDAA
NPTDIAHALNLATAGKADPIVVINADAQATHQAVVNVMEAARLAGIGRVNFAAQIAR
>SEQF1086_CAE43041.1 putative tetraacyldisaccharide 4'-kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAPRCLRRLLERQWRQGGWLSTLLRPLAALTGLVVARKRNAYLTGARAAWRAPVPVVVVGNIYVGGTGKTPVVIEVVRQ
LQARGWTPGVVSRGYGVDVGAAPRVGQGQLAAADYGDEPALIARATGAAIAVHPHRPRAVQALLRAHPGVDVVVSDDGLQ
HLALARDVEIVVQDERGVGNGRLLPVGPLREPAQRLADVDAIVTNAGRPRAAAAPAAGAPRQLAMWLEPTHAQRVTDGAT
RTLADLAALPPARLAAAAGIGNPARFFQTLEQAGIRPAHTLALPDHYAYAQSPFTALDADLILVTAKDAIKCAALDDPRL
WAVQVGTRLSDPDFGDWLSATLRARQP
>SEQF1086_CAE43042.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MESRLLDILVCPVCKGRLEFQRAQAELVCNADRLAFPVRDGVPIMLEAEARSLDAEAPAQPS
>SEQF1086_CAE43043.1 3-deoxy-manno-octulosonate cytidylyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSFTVLIPARLASTRLPDKPLADIAGKPMVVRVAERAALSGAERVMIATDDARVQQAAAAHGHAAILTRPDHPTGTDRLS
EAVDALGLPDDAIVVNVQGDEPLIEPALIDAVAAQLVAAPHADIATCACPLADAEALFNPNVVKVVCTADRRALYFSRAP
IPWARDALAGGARVLAPGLPAWHHIGIYAYRVAFLRRFPALSQGQLERYESLEQLRAMEHGHVIVVHHTDSAPAAGVDTP
ADLERARAAYTNRL
>SEQF1086_CAE43044.1 adenylate kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRLILLGPPGAGKGTQAAFLTQHYGIPQISTGDMLRAAVKAGTPLGLEAKKVMDAGGLVSDDLIIGLVRDRLTQPDCANG
YLFDGFPRTIPQADALKSAGIALDYVVEIEVPESDIIERMSERRVHPASGRSYHVRFNPPKAEGVDDVTGEPLVQRDDDR
EETVRHRLNVYQNQTRPLVDYYSSWAQSDAAAAPKYRKISGVGSVDEIKSRLSQALQS
>SEQF1086_CAE43045.1 probable short-chain dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEIANKVFIVTGGASGLGAGTVRMLVANGAKVVIADVQDEPGQALAKELNQRYVHCDVTQEADGKQAVAAAVELGPLFGL
VNCAGVAPAAKIVGKNGAHPLDLFQKVVSINLIGSFNMMRLAAEAMSANTPESTGERGVLINTASVAAFDGQIGQAAYAA
SKAGVAGMTLPIARDLSKTGIRCMTIAPGIFGTPMIFGMPQEVQDSLAASIPFPARLGRPEDYARLVHSIITNDMLNGET
IRLDGAIRMPPK
>SEQF1086_CAE43046.1 conserved integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPARCFGTLAFMALLRSAATVSSFTLLSRITGLVRDILVARAFGAGPLTDAFWVAFRIPNLLRRLFAEGAFAQAFVPILG
AARTERSDAEVRTLLDRVAVLLTAALMLVTLAGVVAAPWVVTAMASGLRSAERGAEFGAAVWMTRVMFPYILCMSLIAFA
SGVLNTWRRFAVPAFTPVLLNLAMIAACLWLAPRMDVPIYALALGVMAGGVAQLAVQWLALARLGLTPRWSLDLRQAWRD
PTVQRILKQMAPATLGVSVAQISLLINTNIATWLQPGSVTWLSFADRLMEFPTALLGVALGTVLLPSLSAAHARADQDGY
SGLLDWGLRLVLMLGLPAALGLALLSDGLVATLFHYGAFQAQDVQQTRLAVIAYSAGLIGLLAIKILAPGFYAKQDIRTP
VKIAIMVLVLTQLLNAILVPWLAHAGLALAIGLGACINALALLTGLRRRGVYRPGAGWGRFMLRLVPALAALAAVLLAAD
RHIDWIALQPWPGLRALWLGGVLLACMLAYFGLLLAAGMRPRDFTRRGARWRM
>SEQF1086_CAE43047.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTAANTPPLSDQVVDWLLLLRSGQATRTDYARFLAWRNANPMNENAWQQLTGTLAGANTGRLGDAYPTGYDGADQAPPA
ELPAETLAMPARRHFLSSVGALTLGGAGLAAAAYVGNSFYPLNALAADAATNTGERRRYMLSDGSELLLDARSRVNLEFT
ATYRRLHLLEGAVSVTVRADPYRPFSVQTAEGVVRSLGTRYMVRQQVRRTLVVVHENDVEIETVANARGIVRAGTGARFD
ATRVDTPRAGLAAHAAWENGWIEAHGRPLADVVAAMRPYRRGTLRVSMAAGGLPVSGTFPLDDSDATLVALQASVPIRVT
RLTPWFVSIGVATA
>SEQF1086_CAE43048.1 30s ribosomal protein s20 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MANTAQARKRARQSVQRNKHNSSLRSMLRTAIKRVRQSIATGDKAAAGETLRKATSVIDSVADKNIIHKNKAARHKSRLA
AAVKALA
>SEQF1086_CAE43049.1 putative aldolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTMNSPLPNRFRQRILAREQLIGYWLSLASHITAEVAGMADFDWLLLDAEHSPNDVPLLLQQLQALQGSASAAVGRPSW
NDPVEIKRMLDIGFYNLLIPFIDSADDARRAVAAMRYPPQGMRGVSVAQRSNRYGTVTDYLRTINDNICVLLQIESRPGV
EAVDEIAAVDGVDGVFIGPSDLAAALGHLGNPGHPEVQEAIRHLHGRVAAQGKAVGILAPVQADARRYLDMGAHFVAVGS
DLGVFKQATFALRAAFPA
>SEQF1086_CAE43051.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43053.1 putative malate dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPESGMEADMVAIGRVREQIDRVLRAWGMPEAPAGVTADLMAETDLLGIDSHGISMLPSYEDKLRAGTLRIDAQPRLVRE
GTASALLDGMGGLGHPVVAQAMRMAVDKAFEHGVGAVSVRNSHHFGAAGVYARLAVQRGAVALVTSSATTLIMVPTHGAR
PMLGTNPIAFGAPAAHNDALLLDMATTTVAANKVKVYDYYGKPLPPGWAVDGAGAGVTDSAAAMQFIFQRPEGGLTPLGG
TAEMSSHKGYGLAIMAQVLGGTLGGSLMAARHAARRRPDDPDDVGHFFLALDPDAFRAGGSFESEMDDLIDTLHDTPAAD
PAQPVLVPGDPEAAERARRLRDGVPLAAALRERLRRICERSGAEYVLDAG
>SEQF1086_CAE43054.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE43055.1 lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLKTMTLAFAVTGLGVLAGCSSPSVVQQRDGSQVVTPDEPKYNEDTGFYEYEKDGHKVQMNKDDVKTIEEVK
>SEQF1086_CAE43056.1 threonine synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKYISTRGGMAPQSFSDILLEGLAPDGGLAIPEQLPQVDAATLESWRGLSYADLAFEVLSLFATDIPAEDLRGLTRAAYR
QGVFKSEDIVPVRELGQGLQLLGLSEGPTLAFKDMAMQFLGQVFEYVLTRRGTTLNIVGATSGDTGSAAEYALRGKQGVA
VFMLSPHGRMSAFQRAQMYSLQDENIHNIAVRGVFDQAQDIVKQLAGDLAFKTRYRLGAVNSINWARIAAQVVYYFHGWL
RAAPKGGEVSFAVPSGNFGNILSGHIARGMGVPIRRLVLATNENNVLEEFFRTGGYRPRGPEHTYATSSPSMDISRASNF
ERFVFDLVGRDPGRVASLWADLARDGSFDLSALKPQFETRYGFVAGASSHADRLQTIRNTFDETGVLVDPHTADGIKVAR
QFVEPGVPMLVLETALPAKFAETIEAALGRTVPPPADLADLESLPQRVTLMDCDAQAVRAFIEAHAKV
>SEQF1086_CAE43057.1 homoserine dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNPMKVGLLGLGVVGGGTWAVLARNAEEIARRAGRRIEVSRIAVRDVAKARSRVGDGVEISTDGFALVRDPAVDIVVELI
GGDTLARELVLEAIAQGKHVVTANKALLAKHGNEIFAAASARGVMVAFEAAVAGGVPIIKAIREGLTANRIEWVAGIING
TTNFILSEMRARGLPFADVLAEAQRLGYAEADPTFDIEGVDAAHKLTLLASLAFGVPVQFDKAYVEGITQLAQEDIAHAE
RLGYRIKLLGITKRRVDGIELRVHPTLVPAERLLANVEGAMNAVLVRGDAVGPTLYYGQGAGEEPTASAVVADLVDVTRL
HTADPGHRVPHLAFQPDALSDLQILSIEEVSTSYYLRMRVDDQPGVLADIARILADRSISIGSMIQQPARIGGADIIFLT
HEAVEGNVNQAIEHIEALPFVRSKVTRLRMENLT
>SEQF1086_CAE43058.1 putative aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRKFSRIERLPPYVFNITGELKMAARRRGEDIIDMSMGNPDGATPQHIVDKLVEASTRPDTHGYSVSKGIPRLRKAICDW
YMRRYAVEFDPDSEAIVTIGSKEGLAHLMLATLDRGDTVLVPNPSYPIHIYGAVIAGANIRSVRMTPGIDFFEELERAVR
ESIPKPKMMILGFPSNPTAQCVDLSFFERVVALAKEHDILVVHDLAYADVCFDGYVAPSIMQVPGARDVAVEFFTMSKSY
NMAGWRIGYMVGNRELVGALARIKSYHDYGTFTPIQVASIAALDGPQDCVNEIVAQYQRRRDVLARGLHEAGWNVEIPKA
SMYIWAQIPEPYRAMGSLEFAKRVLSDAKVAVSPGIGFGEYGDEYVRFALIENEQRTRQAVRGIKDMFRKDGLLK
>SEQF1086_CAE43059.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLHTDPATALNTVTAYGDGYIEVNQVRFSHAIAFAPEGPVASWPVQRPADITASLLQQAAGLAEVVRDPLAFLDEPEAG
AGARPANAPEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDTQAAARTYNILMAEGRRVVVALLPDGDS
>SEQF1086_CAE43060.1 hypothetical protein BP2787 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTPLIGKPAPLFTAESTIGPVSLDQCQGRAVVLYFYPKDNTPGCTTESQDFRDLYEDFLAASTIVLGVSRDSLKSHENFK
TKYELPFPLISDADETVCNLYGVIKQKNMYGKQVRGIERSTFLIDAYGVLVQEWRGVKVPGHAKEVLQAAKSIG
>SEQF1086_CAE43061.1 hypothetical protein BP2788 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTPMPLPKLPNRPAAILTFPSGDTARAKAARTNSKPAVAGNTDEPLLQPELAGLAPARKAQQKAPARPVAAPAPAPAPAP
APAANRPAARPAPARKPRARTDSAARKLFVLDTNVLLHDPSSLFRFEEHDIFLPMMTLEELDHQKKGMSEVARNARQVSR
SLDSLVQDADNLDDGLALNALGNKDATGRLMFQTTAIHSTLPSDLPMGKADNQILGVVRALQERHPQREVVLVSKDINMR
LKARALGMAAEDYYNDHVLEDTDLMYSGVTQLPEDFWNKHGKDVESWQQGGTTFYRIRGPLCAQFLVNQFVYFEGQMPLY
AQVREVSGKTAVLATLRDYTHGKNNVWGITARNREQNFALNLLMNPECDFVSLLGQAGTGKTLLALAAGITQVLETKRYT
EIIMTRVTVPVGEDIGFLPGTEEEKMLPWMGALEDNLDVLNMGEGEGGDWGRAATMDLIRSRIKVKSLNFMRGRTFLNKY
LIIDEAQNLTPKQMKTLITRAGPGTKVVCLGNVAQIDTPYLTEGSSGLTFVVDRFKGWPHSGHVTLQRGERSRLADYAGD
VL
>SEQF1086_CAE43062.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAPLPVGITMGDAAGIGPEIIAKACAQGLGAPAVVYGDPAIMRRATELLGARLRVLELAAIDQASGQPGCIEVIARGTP
LPPDLPAGRVSAAAGQGAYDYLCAAIDDARAGRIRAIVTAPLNKKSMQLAGIDQPGHTEILAERTGTRDFAMMLANDELR
VLLVTIHIPLAAVVAQITPQAELRAIRLADRACRQMGVTRPRVAVAGLNPHAGEDGKFGREDIDIIAPAVAQARAEGIDA
SGPWPGDTVFMRARRGEFDIVVAQYHDQGLIPVKYLGLDQGVNVTVGLPFVRTSVDHGTAFDIAWQGIADHASLVAAFDL
ALAMT
>SEQF1086_CAE43063.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQRIARFLPDRFTLLLVATVIIASLAPAYGQGIVAFGWITNLAVALLFFLHGARLSRDAIVAGVTHWRLHLTIFSATFLM
FPLLGVALKPVLEPLVTPELYLGVLFLCCLPATVQSAIAFTSIARGNVPAAVCSASASSLLGIFITPLLVGTVVASAAAA
PISFDAVGKIMLQLLLPFVLGQLLRPWIGAWVHRRKALLKWVDQGSILLVVYTAFSEAVNEGLWSNTPIPALLGLLTVCC
IILVLAMAGSLLLGRLFKFDVADRITLLFCGSKKSLASGIPMAQVIFAGQAVGAIVLPLMLFHQIQLMVCAVLATRYGKR
PD
>SEQF1086_CAE43064.1 DNA helicase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTPADPQLEYLRVPPHSIEAEQSVLGGLLLDNAAWDRIADVLVEEDFYRHDHRLIWHHIARLIGLARPADVITVNESLA
SAGKSEEVGGLAYLNALAHNTPSAANIRRYAEIVRERAMLRKLVSIADEISAAALNPQGKEARQLLDEAESKVFKIAQEG
ERGSAGFQEIQPLLTQVVERIDELYHRESESDVTGVPTGFADLDKMTSGLQAGDLVIVAGRPSMGKTSFSMNIGEHVAIE
QGLPVAVFSMEMGAVQLAMRMLGSVGMLDQHRMRTGKLVADDWPRVTHAVQLMQDAQVYIDETPALSSMEVRARARRLAR
QCGQLGLIIIDYLQLMSANSAGENRATEISEISRSLKGLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA
DVILFIYRDEVYNPDSPDKGSAEIIIGKQRNGPIGTVRLTFQGSSTRFLNFAPGTQY
>SEQF1086_CAE43065.1 hypothetical protein BP2792 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNEPPLHHNAPPGLRAWLDGEQAAAIRSVKEVTVDGVPCVVKRRRPGVRRGISYVLRYLRAFFLALLCRILLGEFPRPSV
LLRNGLDYEAERLRRLLQAGCRVPEVWWQEPGLLVLEHVGDDLPFRLRQADEAGRIALAQALARDLAEFHGRGMWHGGAQ
VRNVTLRDGRLWRIDFEENIGGALSLPLAQAYDLYQTLASLVSLRKLPPEQASHLGKLVLDTYFAAHPDSEVRARMRRIA
RLICGAARLLRPLGGRLPWRDVRAFFRVAETLRLLLHP
>SEQF1086_CAE43066.1 50s ribosomal protein l9 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQIILLEKVANLGNLGEVVRVRDGYARNFLIPQKKARRATDAALKEFEARRAELEKVQAEKLAAAQALAERLNGFQLKIS
QKAGVDGRLFGSVTNADVAEGLRKAGFEAVEKSQVRMPNGQIKAVGEYLVQAVLHADVVADVVVLVEGEMA
>SEQF1086_CAE43067.1 30s ribosomal protein s18 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAFFGKRKEKRKFTQQNPLFKRRKFCRFTAAGVEEIDYKDLDTLRDFVQENGKIIPARLTGTRAIYQRQLDTAIKRARFL
ALLPYTDNHK
>SEQF1086_CAE43068.1 primosomal replication protein n [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTLELSARVLECGAMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLLADTPLGTEMQVQGFLAPAR
KDSVKVKLHLQQARRIAGSMGRDPLVG
>SEQF1086_CAE43069.1 30s ribosomal protein s6 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRHYEVVFIVHPDQSEQVPAMVERYQALVTGQSGTVHRLEDWGRRQLAYPIQKLVKAHYVCMNIECGQATLDELEHSFRY
NDAVLRHLVIKTKKAPAAPSIMMKSVEREEARKASAEAAATATAAE
>SEQF1086_CAE43070.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNSPIDPAIVMPDVQSSTDTRHIPIQRVGIRGVRHPMLVLAGDGAAQPTVANWTLTVALPAEEKGTHMSRFVALLEKYRA
TPMTPALFAAMAREMLPLLHAERGDITASFPYFINKSAPVSGVQSLLDYEMQWIARAVGEQVEFELVAQVPVTSLCPCSK
AISEYGAHNQRSHVTVSAIVDGDFRMDELIRLVEDEASCELWGLLKRPDEKYVTERAYDNPKFVEDLVRDVAARLKAHPG
IGRFRVEAENFESIHNHSAYAVVEG
>SEQF1086_CAE43071.1 1-deoxy-D-xylulose 5-phosphate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTELLDRILSPADLRQLDRRELKRLADELRGFVLESVSRTGGHLSSNLGTVELSLALHYVFDTPHDRIVWDVGHQSYPH
KILTGRREGMAHLRQQGGISGFPKRSESEYDAFGTAHSSTSISAALGMAVASRNAGVQRQHIAVIGDGAMSAGMAFEAMN
NAGVTPNINLLVVLNDNDMSISPPVGALNRYLARLMSGQFYAAAKNVGRAVLQHVPPVLELARRLEEHAKGMVTPATLFE
EFGFNYVGPIDGHDLDALVPTLQNLRALPGLQFLHVVTRKGQGYKLAEADPVLYHGPGKFDPAVGIQQAKAPARKTFTQV
FGQWLCDMAERDERLVGITPAMREGSGLVEFEQRFPQRYFDVGIAEQHAVTFAAGLACEGQKPVVAIYSTFLQRGYDQLV
HDVALQNLDVTFALDRAGLVGADGATHAGNYDIAFLRCVPNMVVAAPSDESEARLLLSTCYEHPGPASVRYPRGAGCGAA
VGEGLATVPLGKGLVRREGRRIAILGFGTLVQAALGAAGQIDAMVADMRFVKPLDRELVLELAARHDALVTVEEAAIMGG
AGSAVLETLAEAGVTLPVLQLGLPDAFIDHGDQAALLAGLGLDAAGIERAIRARFGALLA
>SEQF1086_CAE43072.1 probable geranyltranstransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKQSHLACADWLRERAQHVEHVLDELLPGADIAPTRLHEAMRYAVLGGGKRVRAALVYAAGQACPVNGSTLAVGASMDRA
AAAVELIHAYSLVHDDLPCMDDDTLRRGRPTVHVQFDEATAMLAGDALQPLAFELLAGMPIAPALVVQAAQVLARAAGSQ
GMAGGQAIDLHSVGRMLTRDELQTMHSMKTGAMLACSVTLGGIVAGASSTARQALDSYAQAIGLAFQVVDDILDVTADTA
SLGKTAGKDAADNKPTYVSLLGLEQARALAQELRQAAHQALAPLGESGARLGQLADFIVLRDR
>SEQF1086_CAE43073.1 exodeoxyribonuclease VII small subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MASSKQADPQTDARPLPQDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPL
DPAALDDE
>SEQF1086_CAE43074.1 putative transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLSEINYKNDAIPMQPFSTRPPDPDGLPASQPARRKRAASAAGAASPDFITALARGLDVLRCFRPGVRALGNLDLARLTG
LPKPTISRITYTLTELGYLRYHADTGKYSPGYAVLALGFGVLASLEVRELAKAGMSELAVQTGGAVALGAFDNDAMVYVE
AMHGSPALYLRLPVGYRASLDTAMGRAYLAALPEAARQALLGRLGQAAPPPAVVARAVEELSAEGCCYALGEWQSGINAV
AVPFASVTGEGVFVMSCGGPLGLLPERTLREQVAPALRQAAARLAGGAG
>SEQF1086_CAE43075.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLRKGLQLLAALSLSLAAASVSAQSFPARPIKVVSPFPAGGATDVLTRLLTERMAKDLGQPMIVENKAGAGTSIGAAYVA
RENPDGYTLLMATNSTLVTNRYLYKELPYDPDSFVPIGMVGIGPLVLLASPKHGFKSTQDIVAYAKQHPGKLTFATFGAG
TSSHLAAELFKKQAGIDILHVPFKGATQALPALISGDVDLFFDMVATGMPQAEAGKIDVFAITSPTRLATLPKLATLTEQ
GYPNEMTAWFTFVAPHGTPEAVRARLEQALQATLKDETVRTKMLAMGIDPRSGTAQELSTQMKNEQPVVSQLIKQANIVL
Q
>SEQF1086_CAE43076.1 putative integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPTIEDRYARLDAARWLAALAVVLLHSAAQTVSDPAAYGSHAWLAANLYDSAARWCVPVFVMVSGALLLDPDQPHDARRF
YSRRMARVCAPLLFWTLFYLAWRTALDWWDDGRLDFSFWPRKVAEGAPYYHLWYLYMIVGLYLFAPLVRLLYARSQPRAR
ALWVVGILGVAVLDALYRRALGGGNGLFLTWFLPYLGYFVAGRLIFDGELRMPRPGLVLAASVAATAWGVSALSDSRALD
LYFYDYFSVTVPLMSLAAFQLIVGSPRLPALPALAPLTFGIYLIHPLFLDLAHRIGAARAWRPDAWGVPAITAAVFALSA
LASWMLRRHRLTRRLV
>SEQF1086_CAE43077.1 putative iron-sulfur protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDIGRMAHVVPARTQLPVSAYFDEARFAREQELIFKQSSLYVGHQKLVPELGDWRTLVQEDGGRALVRNQQGVELVSNV
CRHRQALMLGGEAGNVSGNANTRGSLKDTGGNIVCPLHRWTYNDRGKLLGAPQFDATPCMNLQRFRLRDCHGLLFEGPRD
PAADMAPLFARPEFDFGDYVLDHVEVHQCNYNWKTFIEVYLEDYHVGPFHPGLGRFVTCDDLAWEFNDWYSLQRVGVHQA
LAQPGSAVYKQWHDRLLDFRAGQAPDFGAMWVTYFPTHMIELYPHVLVLSTLYPKSPQETLNVVEFYYPEEIVAFEREFV
EAQRAAYMETAIEDDEIAERMDAGRKALMLRGANETGPYQSPMEDGMQHFHEWYRRVMGETED
>SEQF1086_CAE43079.1 putative cation transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQSSATPKPPATPRRLDPEDAQHALAEVQECLRRQHLVEDLVHRQEQGDDKAHLVEDLVHRQHEAELATLINGLHPADI
AFILESLPKDERQTVWRLVSTEHDADVLIEVEDWVRESLIEAMDRQDLVAATGSMDADELADLAPDLPPDVVAEVQKGLT
EEERAQLLEAMGYPEDSVGAIMDFEMVRVREDVSLEVVLRYLRRLHELPDHTDQIFVVDRQDKLQGVLPIATLLVSEPDT
EVRAVMNSDFLTLGPLDSDADAASAFERYDLVSAPVTDEQGRLIGRVTIADVVDVIQEDSQEQALSRAGLQEEDIFAPVL
MALRNRAPWLLFNLCTAATASFVASRFEDTVSHIVILAFLMSIVAGIGGNSGNQTMTMIIRALAVGRITGRNLWQLVKRE
MLVTLLVGLCGSLVAALFAWAISDSLSIAVVMMAAMICNMLVGASVGVMVPMLRARFGKDPAIGSSVLLTFATDSLGFFI
FLGLATIFLL
>SEQF1086_CAE43080.1 putative thioesterase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTNPPKSPFTSLPSGREPVLRVMPMPADANIHGDVFGGWIMAQVDIAGSIPAARRAAGRVATVAVNAFQFKQPVFVGDLL
SFYTSITRTGTTSVTVSVEVYAERQRLDAEVVKVTEAVLTYVATDEARRSRPLPTL
>SEQF1086_CAE43081.1 putative integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTTTSTLPLPTPWRDKLNGILFVALMAAAVVQLADLPFIRQFGFSPLVVGIVCGMLYGNFLRGTMPADWGAGVHFTARR
LLRIAVAFYGLNISIQQIAAVGLPGLAVSVGVVASTLLIGTVAGQRLLGLDRDTAMLTAAGSAICGAAAVLAFEPTLRAA
PHKSAVAVATVVLFGTLSMFLYPVIYHAGWLPFDTQALGIYIGGTVHEVAQVVGAASNIDPATTEVATIVKMTRVALLVP
VLLVLGFWLRASAAAGADGKSHAKLPVPWFAIGFLVLAIVNSLDILPSDLVTAIRKLDVFVLTMAMTALGIETRFAQIRK
AGPRVMALGLVLYAWLVFGGYGIVKLAT
>SEQF1086_CAE43082.1 putative transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTPEQLLTFASVADAGNISRAAELLHLSQPAVSGQLRMLQDWFGEPLYRRSGHGIVLTAAGERLAEHARQLRQVYSQAGA
LRDAWRGLETGSLRLGASTTPASYLLPGLVAAFRARYPAVGVHLSDGNTRQIVERLPSLDLAFIEGEVPAGLPADTVVHP
WRQDEVVAIVRSDHTLAGNGAATLRDLAAWPQVTREPGSGVRGLVERAFASAGLAPAVGLELAGVEGVKQAVRAGLGVGF
VSIMSVRHEDGSLATLRLLPRPLTRTLSILAPHASAAARATQRFLDACLALP
>SEQF1086_CAE43083.1 putative hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLIEPIVAWRQDIAAIRRDIHAHPELAFEEFRTADVVAARLQEWGIEVDRGLGGTGVVGIIRGTREGPRAVGLRADMDA
LPMQEANTFEHASRNPGKMHACGHDGHTAMLLAAARFLSQQRDFAGTVYVIFQPAEEGGGGAKRMIDDGLFTRFPMEAVF
GMHNWPGMKVGQFGLTAGPIMASSNEFAIHIKGKGTHAGMPHLGVDPVMAAVQLAQSLQTIVTRNRNPLDAAVLSITQIH
TGSADNVVPNEAVMRGTVRTFTLETLDLIERRMGEITRLTCAALDCEGELEFRRNYPPTINHPAESAFCAGVMRGIVGAE
NVNDHVQPTMGAEDFAFMLQDKPGCYVWIGNGSGDHRDAGHGAGPCMLHNGSYDFNDELLPLGATYWVELARQWLARP
>SEQF1086_CAE43084.1 long-chain-fatty-acid--CoA ligase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEANTMLRPWLAHYPAGVPHEISPQDYTSLTDLLDQACRRHAGQVACRSMGSDMTYAQLDAHARHFAAWLQGRGLARGAR
VALMMPNVPAYLVCLLGTLRAGMVVVNVNPLYKADELQRQLLDSGAETIVILENFAHTLQAVPDRGALSHVVVVGPGDLL
GGLKAPLVNLAARYVKKLIPPWRIDGAHRLPDALRDGARATFTPPALGMDDLAVLQYTGGTTGVPKGAMLSHGNLVANVL
QTEAVAQPVLHDLHGRQLTIISALPLYHVFAMTVCGLYGMHAGMRNLLVINPRDQAALIVAWRQAPINIFPGVNTLFNAL
VNNPDFAKLDFTDLRLTLGGGMAVQRQVAERWLELTGHPLIEGYGLSETSPVATVNPTDAKTYSGSIGLPLPSTDVAILD
DDGAPVPLGERGEVAIRGPQVMLGYWQKPEETRNVMTADGFFLTGDIGIMDEAGYTRIVDRKKDMIAVSGFKVYPNEVEA
VIAAHPGVLECAVIGVPDEHSGEAVKVFVVKKDPALTAEAVLQWCEERLTGYKRPRHVEFRDELPKSNVGKILRRELRPE
AGS
>SEQF1086_CAE43085.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43086.1 inositol monophosphatase-family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDKHHAVATKYLAAGPNSPWLRNALRAWAYTWAMQTSAQRSPASATLDLGAAVDAAVTAAHAGAAILQSYAHHRSDLVID
RKARNDLVSQADRESEAAVISVLRERTPQFGIVAEETGGAAQGPATTWYIDPLDGTTNYLHGIPHYAVSIALVAHAGTRV
VAGADLQEDTPVIGVVYDPSSEELFTAVHGIGSWLNGHRISCSRTSTLDDAVLATGFPFRDFSFAHQYMPMLHDAIRRTR
GVRRMGAAALDLAWTACGRYDGYWEMGLAPWDVAAGTLLVREAGGVCTDMMRQQSWPSGGRVVAGNRHIHGALFDMVSPH
LDAPAPDSSQA
>SEQF1086_CAE43088.1 hypothetical protein BP2815 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPPKFDFAHTTQLDTVELLTSRPSRIDFDAGDGLHLVVEAHAPGVYRLRCGEASLLTDEKSSARARAVAEMLLARQEAVG
EATLTPRDDGGGWRIAQGDTTLEVLSDPVRVKLYRGDQEVFASEVSAHTPAFGHNALDETDEAVWTVGLGLEGAEPVYGL
GETPGDLNRRGEAVVSDDPEHRALPLAWSPRGWGVYANTMRRVEHAVGLEPAEGAYVLTIDDPVLDLFLFVGEPAEILNQ
YTALTGRAGQPVLWAMGAWLQQADGQMPTETAALVARLRDQQIALDAVTLALPAAWSFQADKPVLEWDAQRFPDARQMLA
LFHKHHVHVAASGFPGVLKSSLLFEELEDRGWLLTRDDGSAQVFDGNAATGGQPYGLLDLSYRDAYAMWVERHRQLIEDG
LDAPACDAQIAIPDGVSARNGETGPALRTMYPLLARRALFDAVAGLKVPPEGVVPSTDLFPAAQRLPWQVGPRVTNDWAG
LEHSLRTALSIGASGVPVQVHALGSAQAPLEGMTAELYLRWLGACVLSANFSFQGVPGLLPDAFGEEALAHARTWMQWRY
RLIPYVLGAIEDSARTGLPVQRSMAMSFPHDPHAHAWDLQYLLGPALLVAPVTQPGKQVRVYLPKGDAWWDLNTGHRYEG
GTTWTVECELDRYPVFGREGHMLCLGPAAQHTGEFNSARILDEVWMFGMPVHNPVVMRNKIRVMQMQGSSYIKGLEGLRI
LPSEGLEVKRRGAEVRISRAR
>SEQF1086_CAE43089.1 ABC transport protein, ATP-binding component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIHIENLSKTYATPHGRFEALRGINLHIQQGEVFGIIGPSGAGKSTLVQCINLLERPDQGSIAIGGQALVGLGEAQLRNQ
RRRIGMVFQGFNLLARRTVYGNVALPLEIAGVARAEIPARVERLLALVGLEHLRDRYPSQISGGQKQRVGIARALANDPD
VLLSDEATSALDPETTHNILALLRDINRKTGVTVVMITHQMEVVREICDRVAVLSHGEVVELGSTREVFAAPRHEVTRAM
VSAATASDLSEATLAAVKQRIDALAAAEPGRAVRLWRLSLKGVAAGEPLWSDLAREFALDVSLVQARVEDIQGVAVGTLF
VLAQGAPHAVKDALAALAAREITVEEIAHEPATDRSAYHVAA
>SEQF1086_CAE43090.1 ABC transport protein, inner membrane component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVGVSGAISVVVGIPLGVLLIVTGRGGMLQNLAVNRVLAAVVNGTRSVPFIILMVAIIPFTRLLVQTSIGTTAAIVPLAV
AAIPFMARVAENAMREVDPGLITAARAMGTSPLQIICKVLLPEALPGLVAATIVTIVSLIGYSAMAGAIGGGGLGDLGIR
YGYQRFLPEVMLAVVVVLIALVQVVQSLGDWLVRRMSHR
>SEQF1086_CAE43091.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTKFLKTLAAFALGAAVFAQPALAQDKPLKIGVTAGPHAQIFEVVKQEAAKQGLNIQVIEFSDYVQPNVALASGDLDAN
SYQHQPYLDNANADRGYKLVSIAKTVIFPIGVYSKKVKNLNELKDGARIGIPNDPTNGGRALLLLQEHGLIKLRPEAGLK
ATPIDVVENPRKLRFIELDAAQLPRSLDDTDASAVNTNFALEAGLDPSKDALVRESAESPYANVLVVREQDKDRADLRKL
VSIYQSAPVREFILGKYKGAVVAAW
>SEQF1086_CAE43092.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIVHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43093.1 putative alcohol dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAMFEFCTHARTLVGAGASDALGETLAARWGASRVLLVTDGALVSLGLAGRLRDALTSAGHTVAMFDEVVADPPESVVER
AITAARDARAQMIVGFGGGSSMDVAKLAAAFAGTTQDLRQAYGIGLVAGPRLPLVQVPTTAGTGSEATPIAVVTTGEGAK
AGVISPVLYADLAVLDASLTLGLPPAITAATGIDAMVHATEAYTSRVLKNPISDALAREALRLLFRALPVACRDGGDLAA
RQDMLLGAMLAGQAFANAPVGAVHALAYPLGSAFHVPHGLSNSLVLGPVLRFNSLRCETQYAELADVILPGHAGGVAEKA
AAFVQAMAEVAGALELPTRLAQVGVTAADIPALAGLALQQQRLLANNPRDVTLADATRLYEEAF
>SEQF1086_CAE43094.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43096.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTGQTQGKAVIARERISFWGGFDPQTGRIVDPYSSLRGRDISDCVLILLSSKGSSGTSGMLSLATRAGHAPAAMIQVEMD
PVTVMGCLVNNIPLLQASGFDPFEQIQDGDLVRIDGENGTITLTPGQA
>SEQF1086_CAE43097.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MILTDEQQGLLNGDAGDVVAKYFTWLVEWGRLMGAQRLVKVDSVHTSGITAQDRVAGAVSPEARKKTLEQVIEFTSVRMR
APTATHVARVCVEDDKGGGLSAEDQEFQKLVIDRARDAGIQLTWTCAPYIAGILPSKNQICAWTESSAVVYINAMIGARS
TRNGTESAIAAAMSGWFPEFGVLLEENRQADLIVEVEAAPSEELCDWGFLGYFAGEVSGLRTPVLDQLRAPSLEEAKQLS
AAVATGGGCTMFHIAGVTPEAPTLDAVARRPLERIRYTAADRARIAAKLNTLTSERIDYVVLGCPHATLHEIQVIASQLE
GRRVSPNVRLEVWTAWAVRAVAQRMGLVDVIERAGGKVLTDSCPSITRSGHGRRMVTNAVKQGNYLQGMTGHEVAVGKLT
DVVSAAMTGTWQGL
>SEQF1086_CAE43098.1 putative GntR-family transcriptional regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSTKRPASRADEITQELVRMIQLADARRIAKLPTEMELAAQLGISRPVIRESLSRLESLNMVTRRQGSGLYIVAPEKRS
PEALVLLEQSAPLSPRSIAEAMSVRAILELETGRLAALNHRQVDLDRMAAEIERLAATGARGLEAAEADEAFHRALSDAA
GNVTLSQVLDLFLRLSWRRRVEYFSQPKLGKQSIIEHQEILNAVASGDTDAVSTAIRTHLNSAERFWDSKYVKKKS
>SEQF1086_CAE43099.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MERRRLLLGGLAAGIAAPLLARRAMASPRKYPGKPIRMIIPFPAAGVTDISARLLAAAMAEELGQTIIPENKPGAAGNIA
AKYVADAAPDGYTILFNNSATHGINPTLFKSINFDAERDFTPILYCSSSPNLFVANKNFPGDTIADFVDIARQQGPAVMM
ALGSLGSSQHMAAELLCHVTATQFTTVPYRGGALALQDLIGGTVQTLCDGYPSSIQHIRRGTIKALGVTSPERIPSAPDI
PAVAETLPGYSAYGWFGLVGPAGMDADVVAVLNQAGNQALQDPELRTRYAEVGATLHGGPPEVFKQHIQDEIKRWREIII
ATNAKPE
>SEQF1086_CAE43100.1 hypothetical protein BP2827 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPCRVVPNTPAIFCHGKRAMFFEDIERIRSALQRSGRKYLTPRLEAVLGTVYQLKRGEESVYLCVEPSMAVRKHAHRPHC
TIELGAPDWDTVLSGERSIMSKVLAGKCGFLKHERRYIMHFSMLLQAVLLEEKQ
>SEQF1086_CAE43102.1 putative ABC transport protein, inner mebrane component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKENRLGMLLLSPALLVLTALVIVPLLATIAFSFFDLRLGESSAKFIGLQNYGDLLASEPFWRSLRITFLWIVLSVIPQL
ALGTIIAVLLDRVTRFRAFLRGAIFLPWVIPVAVVAYMWQWLLTPETGLVSGIAGGAGLEGLARFPFLSSPDTAFATALI
VSAWRGIPFVVIMVFAALQGISDEDYHAARVSGGNSIQCFVYVTLPYLKGLLLILAVIRTMQIANNYSLMALLTNGGPAD
STRILPLMIYELAFREFALGKASALGVIALALTCLCIAFMMRRRHADN
>SEQF1086_CAE43103.1 ABC transport protein, inner membrane component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAWLVGAVLFVPIAWMVLTAIRPEHELYQVPLRILPGALDMANIQSAWYEKSFGQFFFNSAVNSVLSVLFSMPIGILAGY
AFSRFEIRHSKYYRAYVLFAYMVPIIILVVPFYLIAVWLNIYNTRMGHVLGLSTYAIPFATWVMIGYFEQLPKEVEHSAA
IDGADRMKTLIYILAPMIKPGVVATALLTFILAWDDYIFALILLDSETLRTLPLAIGYLSSDYELTDGLMMAMGTITTLP
ILLLFVFFQKYFVGGMTSGAVKG
>SEQF1086_CAE43104.1 ABC transport protein, ATP-binding component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKSTSTAIQLNSVSKSYGGSPILDDISLAIAPGEFVVILGESGCGKSTLLKIIAGLEQPTSGAVRIGDAVMTDVPPKDRR
LAMVFQSYALYPHLKVWENISFPIKMSLWKYAYSLPLLGRLFPNRKRILKTMREAAERAAGKVRLTPLLDRKPRALSGGQ
RQRVALARAIVDGREICLMDEPLSNLDTQLRASTRREIADLHRDLGHTIVYVTHDQTEAMTMGTRVILMREGRIEQDGAP
AELYEQPATTYAAEFLGSPRINFMRVASAQFSQAAAQAVVTLGDGRCPLDPHGDLLIGVRPDHLEITPDAQGEFLFLSSE
YLGGKTIVSLKRESGETMVQAFGSDRLDRAQRYSVRFEGRHAMCFDPQSGRRIRE
>SEQF1086_CAE43107.1 ABC transport protein, Solute-binding component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMKRVASLLVSSLLYSGCAMADGSIVVWMTDSRPGYKKWLETEAAAFKAKHPGVKVSVVQMSPNDAYLKIPAAAAAGGLP
DVIWTTYGLAPWLDGMKGGKLADVSDLIDRLGKNRFDEDALKQWSYRGAVACVPVARTPTYLMHRADLFKKAGLAAPESW
EDVIRAAQKLNDPANGKYGIAMPGKTDFSPRFAYGMILYSMGGSTFDTQGNPIFESPASIDALKVYKQLYAYSPPGSLNF
GFSEIQRALAQGRVAMTISNPSSMATFQRTNRDEGSTLALALPGKVNRTIQNQRGWCIADGKNSQDAKAFVEHLFSTSSF
AAYLDAASISSFPVYHDQAAYDQFQASNETVKRFPGATDFIRRHTVGTMPGIDGVGLTPKSGDLISSGQIESAINRMLAN
DMSKQETAAAMQKETLRLLN
>SEQF1086_CAE43108.1 putative DNA-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAPFSICVSILLLVGDSNRAGVTARYVSEQLGLSLSTAYRWIDMLRQSGLVVRHPNTRKLHLGPVAFDLGVQAVARPYVP
PAIEEVLKPIASRHACRLHLVRCSGDYSVLQRTYFDRAELEIVPSKVAAMRLLGIGPAGVCLLSRWPDYEIDRYLVRNQD
GLLAAGYQGADIRERVRQCRKLGCFVTRSVLTPGYTAVVIDFEVDGVVYGVSAASAGSEGGKQFHAIREALDRARASLAT
QAIPEFALHG
>SEQF1086_CAE43109.1 putative MerR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMRSAQAVRRPDLLSVGEVAARTGLAVSALHFYEAKGLIASTRTAGNQRRYARAVLRRVAVIRVAQRMGLPLAAIAQALA
TLPTSRAPTVADWRRLSRAWRQELDQRILGLTQLRDQLDGCIGCGCLSLRECPLRNPDDAMARLGAGPHFPPHE
>SEQF1086_CAE43110.1 putative hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLASVVPELAFLSPRIMDPRTDFADGLTRCGWLDHSVDYVAYHDHEWGRPQADDRALFEQLSLEGFQSGLSWRTILNKRA
AFRRAFADFDMERVAAFDERRVEALLQDAGIVRHRGKIEAVINNARRALALRDREGSLAAFFWRYEAPPRGADAPFEVLA
CTAESEALSKALKKQGWSFVGPTTVYAFMQSVGMVNDHHPQCHHHAACEQARYRFQRPD
>SEQF1086_CAE43111.1 exported protein, conserved [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRKKKIFLGVAGAVLVLLAAVLVVLATLDWNRLKPTINEQASAALGRPFAIQGDLSVQWACEPGQGGWRGWVPWPHFVV
HDVAIANTVWARDPNLLTLRRGEFRLAPLPLLRQRVVIRRIQLSGLRADLQRRADGVANWEFTMPDTGEPSPWKVDIDAI
GFDQGAIRYADAIAQADLDVLVDPLGKPVPFAELAGAPAAGGAADQAAGKADSGKAADAAAPAAPPDYAFGWQVNGRYKD
LPLEGTGKVGGMLALRDARQPFPVQAEVAIGSTRIAVAGTLTDPMSLGALDLRLKLAGASMANLYPLTGVTLPDTPPYST
DGRLVARLQDSKGARFEYRDFNGKVGASDLHGDITFALQQPRPRLSGKLSSRLLRMADLGPLIGVQSGGAKSVKAEGEKA
VAQPADKVLPVQEFRTDRWRVMDADVELRGERIVHSDRLPISDLTAHVLLDDGMLTLAPLRFGMAGGSLDATLKLDGREA
PMSGNVHLAVRRLRLKQLFPNVQAMQKALGEVNGDVALSGQGNSVAALLGSASGETKLLVNDGVISRALMEIAGLNVGNY
VVSKLFGDDEVKINCAAADMGMTCGVMTPRVFVIDTENAVVNITGSIDFRKELLNLDIDPDSKGFRLFSLRSPLYVKGSF
KKPDAGVHVGPLAARGAGAVALSVLLTPAAGLLALIAPSTNDENHCATLLTEMRKPARAPRR
>SEQF1086_CAE43112.1 putative TetR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAERGRPRSFERTEALRQAMEVFWSKGYEGASLADLTSAMGINAPSLYAAFGSKEALFREAVQRYADTEGARTRRALLEA
PDARAAIEGMLLAGAQTCTLNGKPPGCLMVLGATAGPAQHAPVRGWLCEHRRTMQDLILQRLEQGRRDGEIGPGADLAAL
AAFYATVLHGMSIQARDGADRAALQAVARQAMHAWDALAHPPAAAR
>SEQF1086_CAE43113.1 putative short-chain dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MELAMAALDGKVAFITGASRGIGAAIARRLAADGADIALTYVSAADKAHALVEELRAAGRRAHAYAADAADAGQVREAVA
RAAADLGRLDILVNNAGIFLAGPVEDISADDYDRSMDINVRAVFVATQAALPHLGEGGRIVNIGSCLAGHTGRPGVALYA
AGKAAVAAFTRALARELGPRGITANVVHPGPIDTDMNPAGTDQAAALVQMLAVPHYGEPADIANMVAYLAGPQARYVTGA
ELSVDGGYAA
>SEQF1086_CAE43118.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43120.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIVHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43121.1 putative LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDLKLFEDLIALAQTGSFVRAAELRHVTHPAFGRRIRALETWAGAPLVERGRTPVVLTAQGEALLQAAGQVVEQVDRVR
EQLRSAGRQEERILRIGTGRSLARTLVADWIARLRQRPARLLDGAQVELSTGVMQEMAALLEQGRVDLVCCYEHPALSVQ
LTPGRFRYMTLGIDKLVPVCQADARGRPRHALSEGGPAAPLITYSGGLAMARIAGDRLETFPYALAPFVRCDSLDAAHGM
AQKGLGIAWLPWSMVAGDCRRGVLAALGGRAEEIAFEVRLYRPRTRLSALAEAVWECTQRGR
>SEQF1086_CAE43122.1 probable 3-methyl-2-oxobutanoate hydroxymethyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSVPTAAKRITTRQLRMRTPDEPIVALTAYTAPIAGLLDAHCDLLLVGDSLGMVIYGMETTLPVTVDMMIQHGRAVMRGS
QRACVAVDMPFGSYQEDERQAYRNAARIMAETGASCVKLEGGAEMASTVAFLVERGIPVMGHVGLKPQSVHGHGGFRTVG
RGAEAEQVMADAQAIAAAGAFTVVIEGTLEPVARAITEALPVPTIGIGASPACGGQILVSDDVLGLFSDFTPRFVKRYAQ
LGPIIEQAAAAYASEVRARTFPAPEHCTGMPAPDGRPA
>SEQF1086_CAE43123.1 outer membrane porin protein precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKKTLLAVALASGFAGTAQAAATSVTLYGLIDSGIGYEQVKGPDGFKQSHVGATSGVSSGSRWGLKGAEDLGDGLQAVFT
LEAGFNNQTGNSEQSGRLFGRQATVGLSSSAWGKLEFGHQTNMASKYMADISPFGTDYGMAGIGSTFGATKSLRLDNMVM
YQSPDFSGFRFGLGYSFNADTTKGDNFSTSDNPRVVTAGAKYASGPLTLVATYDRLSPNHAATNGESQSVQEYALGGMYD
FEVVKLHAAWGQTFDGWFSGYSMGTNPSFAGYSKLPSLAYKDGAKVDSLMLGATVPLGKTKVFGSWQRADPKNDKLTGGD
KTYNIFALGATYDLSKRTNLYAYAAYGDNYAFHDEVRNTAVAVGLRHRF
>SEQF1086_CAE43124.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43125.1 probable short chain dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQYWEGKAVVVTGAARGQGAAEVLRLLAAGAIVYALDVLPADDACWRELAEAAGPAASRLHPRVADVAREATWSALAAD
LAAAGAPLYGLVNNAGITLRKTVTETAPDEWRRLLEINLDGPFLAIRALAPLMPRGAAIVNTSSTAGLTGYFSAAYTASK
WGLRGLTRAAALELADQGVRVNTVCPGLVETPMIMQPNAVHDAARARLFHDGNRDATPLGRGADPDEIAAAVVFLLGPDA
SFITGADLPVDGGMTGGGIY
>SEQF1086_CAE43126.1 probable short chain dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQYQDLAGKIAVVTGAGGGIGRAIVAALREQGARVVATDLDPQALAQAMRESGQDVDCRALDVADPAASRALADAVAQQY
GVLDIWVNNAGFMARMPALELDEQTWQRTLDINLKGTFFGAQAAARHMTRQGSGAIINLSSYAGIKPRPNCADYASAKAG
VAHLTQCLALEWSPLGVRVNAIAPGFIDTPMSSWMHGDAQTYTEYIARIPSRRLGQPEDIAAATLYLASQASSYVTGHVL
MADGGVSKA
>SEQF1086_CAE43127.1 membrane transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQQIMETQDLRRRLTSLRAAAVGNALEWFDWTLYGTFSAYLAMNLFDPADPTSALLATLGVFAGGFLARPVGGWLFGRI
GDRYGRKFTLVLTMCLLALTSLAIALLPTYEQAGVYASVLLFVCRLTQGLAHGGESGVAYTYVAEIAPPARRGLWSSSVF
ISVTLGVMAATALAALLTSMLGKEAMEAWGWRVGFGVGALLGVYALYMRRSASESEVFEEHARQAGGQPAGPAMTRGQAL
RIARNIVMIAVASNATYYTWVTFAPATAIATRGMDPSGAYTASLIAQLVCLLWLPVCGWLADRYGRKPIVMAFGLGVALA
VFPVAHIVTAQPWTLFVAQLIGLLVWALLAAIFPAFIAEQVPTQARAMGVGFISSLSVAIFGGTAPYINAWLGAHDLGWV
YTAYVAALGVMAFIGAFLIRETAGLDLNDIPLPGEPDNAAVSRRAAYN
>SEQF1086_CAE43128.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSESWQGRAAPNGSAEPIEFMLDGDCIRGTFYRPAGAGAPVPAVVLAHGWSMVAGGDLEDYAAAVVNRGLAALTFDFRNL
GKSGSLPRQEIDPYRQVEDFRAAISYVRGRPEVDRERIGIWGSSYSGGHALTVAAIDRRVKCVVSQVPTTSGFSAAQRRV
RYDKAQALQAAFEADREARFAGAEPATLRMVDPDPEAPVAYPGPDSYRYMTGEARRCPQWVNAVTLRSLELARTYEPGVY
ARRIAPTPLLMIVAASDGLTPADLQQDAFNNAQQPKELLLLPGGHYSVYTDHFDRTSQAAADWFALHLR
>SEQF1086_CAE43129.1 putative LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDLRQLDCFLAVASELHFGRAAEKLYMSQSSVSEAVKALERALGAPLFDRTSRRVALTPLGETLRQGAAPAVIMLKAALD
DCRRQASGKQRRLSIGFLGGGFYELYRPLVAEFTAAHPGVELDFTELTYVTHYAAVADGSVDVAFCRLPLGADGLCHGPI
VLRDQRMLCVPHDHPFAAAHLLDPELLARERLVRMVPGSVNQEWQDYHFPRHTPRGKPIGDGPIVRTVREGIEAVNARQG
LLMLTKRAASYYATPQIAFVEIDLPAMPSALVRRIDDHRPILQELDALLLRIAMRYGVAPG
>SEQF1086_CAE43130.1 aromatic-amino-acid aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFEHVQAYPGDPILSLNEDFQKDPRVGKVNLTIGIYFDEAGRIPVMAAAREAEAALLADIGPRPYLPMAGLPAYRDLVQE
LVFGAGSAARRAGRIATVQTLGGSGALKVGADFLKRYFPKSEVWVSDPSWENHRTIFEGAGFAVHTYPYYDDASGGLRFD
EMLATVGGLPAGSVVLLHACCHNPTGVDLDRAQWDALIPVLRERGLIAFVDMAYQGFGDGLDDDAYAVRALAEAGVTCVV
ANSFSKNFSLYGERCGGLSVVCETAEQAGCVLGQLTSTIRAIYSNPPTHGARIVAQVLGTPALRQSWEAELGAMRERIQA
MRRAIHDGLAGRVEPRMLQRYLSQRGMFTYTGLGAEQVETLRRDQGVYLLRSGRMCVAGLNRDNVAVAADAIASVLARG
>SEQF1086_CAE43131.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTNPGDGAAGAADRATLDHWRPRLAAIAAAAGQDDAAHDLGHLRRVWDAARAMLQAHPEADALVVLAASYLHDLVNLPKN
HPERHLASRQAAAAARERLARAGFPAARLDAVAHAIEAHSFSAGIAPRTIEARIVQDADRLDALGPVGLVRMFHVGGSLG
RALAHPSDPLAAQRALDDSRYTLDHIEAKLARLPHGMQTEAGRRLGEQRLAWLRDFRAAFSAQWGGGQLR
>SEQF1086_CAE43132.1 probable cation-transporting ATPase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTCASCVGRVERALKAVPGVSDAVVNLATERADVRFAGAPDVGAAVQAVEQAGYAVAASTMELAVSGMTCASCVGRVERA
LKAVPGVRAASVNLATERAHVEVAGAVAPQALVQAVAAAGYEARPLDPGGAAADAAARRQAAELQGLRRALIVAAVFALP
VFVLEMGSHMIPAFHHAVAGSIGVQNSWYIQFVLASIVLFGPGLRFFRKGVPALLRGAPDMNSLVAVGTAAAYAYSVIAT
FAAGVLPPGTVNVYYEAAAVIVALILLGRYLEARAKGNTSEAIKRLMGLQAKTARVRRDGATVEVPIAQVAAGDVVEVRP
GERVPVDGQVTEGTSFVDESMISGEPVPVEKQPGAEVVGGTVNQNGALALRATKVGGDTVLAQIIRMVEQAQGSKLPIQA
LVDRITMWFVPAVMAVALATFAIWFVFGPDPALTFALVNAVAVLIIACPCAMGLATPTSIMVGTGRAAQLGVLFRKGEAL
QALKDARVVAVDKTGTLTKGRPELTDLVLAEGFERAAVLGKVAAVEAKSEHPIARAIVDAAQVEGARLGAIEAFESITGY
GVAARVDGARVEIGADRYMARLGLDVAVFAAEAARLGDEGKTPLYAAIDGRLAAMIAVADPIKDTTAAAIRALHGLGLKV
AMITGDNRRTGEAIARQLGIDEVIAEVLPDGKVDAVKRLKAEHGALAYVGDGINDAPALAEADVGIAIGTGTDIAIEAAD
VVLMSGDLGGVPNAIALSQATMANIRQNLFWAFAYNVALIPVAAGVLYPVNGSLLSPVFAAGAMALSSVFVLSNALRLRR
FAAPFAAR
>SEQF1086_CAE43133.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE43134.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPQHDKSRLVRIDTGPMINPVAGKPSRPIAGDASFRTVTAFEGGQGKVESGVWESTSGSFQSNTTGYIEYCHIIEGEARL
VDPDGTVHAVKAGDAFIMPEGYTGRWEVDRHVKKIYFVTHLA
>SEQF1086_CAE43135.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPNLNLSLDHTGLIVFKLEDARQAFERLGFTLTPRSMHAGALTPGGPVVPWGSGNHCAMFRNGYFELLGLVEPDKPSTAR
RMLDRYEGLHIVAMDCESADAMHPQLTAAGVPAPAPATLERDAAFGPANDQTRRARFRNINLDGEAYPEARFIVIEHGTR
DVLWQPHLLDHPNGATGLAAMYFAAADLSATLERFQRLLGTPSAHGDAYCFELRRGRFWVMSEAAMREHCPVLADGPVHR
VAAACIEVRSLPALQEYLQARQIDYVAAPYLDGAAPSIWVAPAQASCAALQFIQAR
>SEQF1086_CAE43136.1 putative alcohol dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRAAVIYEHGGPGSIKYETAFPDPVAKPDEVILKVGAATLNYHDVFTRNGMPGITVPMPIIMGLDFAGEVVEVGADVKDW
KVGDRVLVDPSDRKTFGGVIGEARHGGLAEYCAVPDHHLVRLPDDVSFETAVCLPVAYGTAWRMMQTIGKIQSGERVLIL
GASGGVGTCCVQLAKMAGAEVVAAASSPEKLARLTELGADHVIDYKQEDFMKAIFAKFGKPHRRLYENGVDVVVNFTGGD
TWVKSLRTLHRNGRVLTCGATAGYDPKEDLRFIWSYELQILGSNGWTRDELIALLEQVRAGKLQPIVDRTYGLADINDAF
RQLEDRQVFGKILVKP
>SEQF1086_CAE43137.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQQAARKLEKADIEAIFARSRFISAMNLEILDIDHAGSRFSVRMPLQDTYERGVPGTKQFHGGALAALIDVVGDFAIGM
LVGGGVPTMNLRIDYLRPAVGDYVDGVAVVRKAGKSAAVVDIDILCPAGKLVAIGRGTYVPITG
>SEQF1086_CAE43139.1 putative ABC transport proteins, ATP-binding component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNQAQHNGNAPVFRVQGLEVTYRSSRGPTTALEGFSTTVAEGEFLSILGPSGCGKSTLLKVAAGLLKPSAGVAELRGQAI
DGPRRDVGIVFQHATLLPWQNVLDNVLLPIRTMGMDIAAGTARAHALLKTMGLEKFEQHYPHELSGGMQQRVGIARGLIH
DPSLLLMDEPFAALDAMTRETMMVELQRIWSETRKSVMFITHSIPEAVFLSSKVVVLGPRPARVLREIDIDLPFPRTEET
LASPKFAQLCAELRSLFSNVAH
>SEQF1086_CAE43140.1 putative ABC transport proteins, inner membrane component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKERTKSIVYPLLLLAALLVLWFIANRYLGVPYYVLPPVEGVLAALYRGYVQGDFWGDFGFTLASMAIGYVGGCTAAFII
GVLFAEYRWLERLLYPFVLALQSMPKVALAPLILVWFGFGLESKAIMVALVCFFPMFINTAVGLEATDPALLDLMRAFSA
SRWHILTRIKIPSAASHIFAALQISVVLGLIGAVVAEFVSSSKGLGYLINAATTTLDTSTMFAALISLAVLGIAGSQLIR
VLHRKLVFWDRGEAGRTLTE
>SEQF1086_CAE43141.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHASDPFSETYAQARAKFLEAARAAGADIHSYCHDTQRGPDGEALYLDVARLGGAQASRMVVVGCGTHGIEGYSGSAAQT
DWLRRLDPSRLPRDTGVLLLHAHNPWGFAHALRFTEENVDLNRNFVDFSQPLPQNPRYAEVHALIARDHWDEQDVEAIFR
KLSDFRESVGEQVYSDAFNGGQYSHPTGIFYGGMRQQWSNRALREAIATHLAGVRQAAFIDLHTGIGPERGHVFLCFHEA
GSPAYERARRWWGERAVNRDGVTHKAVARYQGLLVDAFVAMLPEAETTAVVVEFGTLPRPRMQRASMAARWLWEHQDADG
ALRAMLMRDIREAFYPSAPDWRAGVLVQSREIFDRALAGLGQD
>SEQF1086_CAE43142.1 putative acid CoA ligase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLNLGQLTDPNKNPAAIALIDCLDHEAPRIYTHGDLDRLANACARGLLRKGLKTGDAVALMGINRAEFLIAYLGIMRAG
MVAVPVNYKLAPDTLSFLLQDCQARLAFVDKPRAALAPAGLDTVRFDTAQWDEFLDPGPFETYAPPLRTTAMILYTSGST
GRLKGVQLSHDGQLWTIRSRFLNRKDFDDERFIVAAPMFHMNALANCKFALAAHASIVLLPQFDTHRFIEALGRHEVTWI
TSVPTMMALVVKEKQALAQIDTARVRYIRMGSAPATDQLYEAVRRAFPNAAIAGGYGTTEAGPIVFGPTQGRALPGGGGL
GWVLPDVEVRLVDAQGRDADEGELWMRTPANMLGYLNLPDKTRQVLTEDGWYISGDVFRRDSDGCYYFIGRADDMFNCGG
ENIYPGEIEQVIERLPAVMQACVVPVADEIKGHKPVAFVVLQRGMSLSEQDVKSYVLANAPAYQHPRRVFFVESLPLAAT
SKVDRRAQAEA
>SEQF1086_CAE43143.1 hypothetical protein BP2871 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRFNATSVAGAAQPQRLHGLAADIDRAVAAASTAQTPAAVAGVLAAYREPDELLTPAQQAGNAEHYARHLLYAHPLGRFS
IVALAWQPGQCTPVHGHFTWCAYAVLRGAMQEEQYDWDAAGQCALATRVVARAPGDCVASLAGLDAIHRLRNVGAGTAIS
LHVYGVEGDRVATHVNRIARAA
>SEQF1086_CAE43144.1 putative AsnC-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDATDRKIIAILQENAETPIQSIADQVSLSTTPCWRRVQKLKESGVIRRQVALCDPVALNVGVTVFISVKTNQHSQAWLD
RFADHVTDIPEVVEFYRMSGDIDYLIRVVVPDISTYDTVYKKLIRIADLHDVSSSFAMEQLKYTTALPVDYAS
>SEQF1086_CAE43145.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKSIQSRLLATWAVCAAAGMLAGPAVASGAAYPTKPVTMIVSFPPGGSSDFFTRLVANNLSKMWGQPVVVENRPGAGGNI
GAQAGAHAPADGYTLYMSSINTHAINPGLYQNPGYDHIKDFAPISEIATVMNVLVVNPSVPAKSVSELLAYFKADPSKAF
YASPGAGTSPHLSSELFKRMTDTPITHVPYKGSNAALTDVMAGMVPMAIDNLPAALAHIKAGKLRALAVTSPKRSPDLPD
VPTMDEAGVKGYDVTTWWALFAPAGTPQPIIAKINKDVNALLALPDVKQSIAKQGAEPAPSTPEELARLVEQETARWGKV
IKDAKVTID
>SEQF1086_CAE43146.1 riboflavin synthase alpha chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFTGIVQGTATIAGIADRQGLRTFTIDFPAGFCVDLAIGASVSVDGVCLTVTRIVSADTATFDVMLQSLDITTLGGYAVG
ARVNVERAARDGAEIGGHPLSGHIDFAAAVERVRSMDNNRVLRIGIPPAFRKYVFAKGYIAVNGASLTVSEVDRGEGWFE
VWLIPETRRMTVFEEKQAGDALNIEIERSTQVVVDTVREAVQESLGKLQPVLEAILKEKGLSLEDFVRPPALK
>SEQF1086_CAE43147.1 amidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNYHPSTHTPLTFHDRTQAFLDGGDSPRDYLERCLDTIARREPVVQGWVVLNEAGAREAADASARRYREGRPLSAIDGMP
VGIKDLIETRDMPTQMGSPAYTGNFPKRDSAVVRALREAGAIVLGKTVTTALGFLDPGPTTNAFDPERTPGGSSSGSGAV
VGANMVPVAVGSQLVGSMLRPASFNANWVLKPTYGGMNRGERQGFSQSHVGIHAGCAQDMWTTSIEIVRRVGGDPGHPGL
YGEAAPPAGRKPARLAVLETEGWERLDAASRAAFEAALERIAGQGVRIVRRADCSLVDGLERAIAQAGALSMRLISWEHH
WSLKNMAEQHPGTLGPSLVRQLELGQAMTLERYRHDMLEREAARQRLAALATQCDALVSLASSGPAPRIADLRGTPYPTG
DYSFSCVSSLLGAPAISVPALGVDGMPVGLQVIGQPHGDEQVTAIGRWLHALLAAPR
>SEQF1086_CAE43150.1 putative LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDGLPPLNAVRTFEVAGRLCSITEAAAELCVTPSAVSRQIRLLEEHLGRKLFIRQHRGVVLTTIGHQYLGDISKALVEVR
RATSEAAKPRQRAVFTVRAPHSIAMRWLLPRLARFHAAHPHIDVKLHTSLTPPDFEREDLDAGVMLGRGQWKGLLSHMLI
RNELIPVCAPHKARALRTPADLADETLLHVFGRPDDWVAWLGAAGVEHVDVHRGMKYESSALAYEAALEGYGIAIAQKAL
IDKDLQEGRLVTPFDLSVDQSDYTYYFVLPPEGYKRRSPALDTFRRWVRDVSLPRQAAPP
>SEQF1086_CAE43151.1 putative membrane transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAPRLGAAPRAWAMLALVALIGLNLRPFLTGPGTVLAGIEADTGLGHLGASMLTVLPMLLMGVGAFLAPAVQARVGTRR
GVLAALLALALGSALRLAAWDGALLVATAALCGLGVAYIQAVFPGVIKDRFPGRMAAVMGVYSAMMMGGGALGARLTSRL
AGGAGDSWRAALAWLAVPALIAFAAAWRHLAETPAARRDGALAGTLMRRPRTWLLIAAFGLVNGGYSSMVAWLAPAVQAQ
GWSIAQSGDLMVAMTIAQAAAALTLPALAARRPDRRPWLYATLAMQAMGFAGMAFWPAAAPLAWALIGGAGLGGCFALTF
IAALDHFSQAEPAGVLAALMQGGGFLIAGLAPFAVAALRAATGGWTMHLACVAIACLLIQRLDPASYAQVMAAQPGAAAT
RRAPSA
>SEQF1086_CAE43152.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRANSNSNPGAATPDDDALLREAIALARANARAGGRPFGALVAKDGVVLARGVNRMLADHDPTAHTELLALREAGRALRS
ARLDGCVVYASGQPCPMCLAAMRMSGVARAVYAYSNEQAEPYGLSTAALAVELALPPQRQPGFAFEHRPGAAAPDADLYR
EWQDGPQAP
>SEQF1086_CAE43153.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGMPIIRFYRCWLAACLVSLGGASVAAGDAGQALLQAAADGDAARVKTLLAGGAPLEARDAQGNTPLLRATQGNHAEAAG
ALIEAGADVNAQNGIQDSAYLLAGARGYRAILALTLAHGADLKSTNRYGGTALIPACERGHVEVVDMLLRAGVDPDHVNR
LGWTGLLEAIILGDGGTRHQAIVARLIEGGADVNLADGDGVSPLRHARQRGQAAIVQLLEAAHAR
>SEQF1086_CAE43154.1 putative lysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLDPVLLRSFVTVVDTGNFTRASEHLHLTQSTVSQHVIRLEENLGCRLLDRGQRHVLPTEEGERLLGYARSILRLADEAR
ESVAAAQGNAVLRLGAPEDFMGAALMPVLAPLLARYPLLRLEFDSGLSHQLLRRYRDGELDLLLVKQWEVDADCQAHWPE
PLCWVAARDGPTLPAGEAVPLAVFPAGALYRQEMTRTLEASGRPWHIRYASTSLAGLVAAVGAGLGVSLMPAASAGGELR
VLRKRDGFPAVDGLQLGLYARARLGAAGRDLRDALAAHCGRRAAAMNQA
>SEQF1086_CAE43156.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43157.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQSSLFNSRAFVGLLIVVTIAFAWLLWPFYGAVFWGAILAIIFAPVHRRIAVRLAPRRNLAALLTLLMVLLVVIIPLIF
ITGSLVQEGANLYQRLKSGNLNFGAYLQQAIDALPPTVHDVLARFDLADLGSIQEKLTAGMMQASQFIATQAFNIGQDTF
QFLIGFGVMLYLLFFLLRDGSQLSRRLRRAVPLDEHHKQHLFRKFTTVIRATVKGNIAVAAAQGALGGVMFSVLGIQGAL
LWGVIMAFLSLLPAIGAGLIWAPVAVYFLLTGAIWQGVVLILFGVLVIGMVDNVLRPLLVGKDTKLPDYVVLISTLGGMA
LFGLNGFVIGPLIAALFVACWDLFSPPDDTAGDGAARP
>SEQF1086_CAE43158.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPAMRSGAAWVLEGRFMRFGWGLPALAVVLALAGCVNREPEERAAFIAYLEQVAAPQAGVVAAPPDPPTRKALGDYEAQY
EPMEAAHAAVREALAAQQAALQALRLHSVDEIVARQDGWDRLAERLAAARTGLEQARAAADAARAGMEQPPDLRNAYARA
YEHSVTAPAQALARISGLLEPAVEDARRVAGFVARHRDQVDTDGPLTQVRDPSVRSELNVLLQALNGRSDQVSQAQALLN
GLAGPARQAP
>SEQF1086_CAE43159.1 hypothetical protein BP2887 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRPCAHSITRTRKRKNMNQLFDTNHLIRRPTQTKLDDTPIHVGDVVHLQLADGPVIRARVIYNAPINGTTTYTTELIRCA
GDDKASHGQRIRFRHEHVHRIESVRGLTH
>SEQF1086_CAE43160.1 putative integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQPTATSVRIWDLPTRLFHWAFAAAVIGALVTVKLGGLYMDWHVRFGLTALGLVLFRLIWGFVGPRHARFATFVRGPGAM
LAYLRGRAADHAGHNPLGALSVLAMLAVIGVQAATGLFASDDIMIQGPLYGHVSEATANTLTGLHQANEWIIFGLLGAHL
LAIAWYSAVRRRALVRAMITGNAPAAQLPPATPASQDGPAIWLRAAVVGACCAALVLWIQAQAVAVDMSFS
>SEQF1086_CAE43161.1 putative c'cytochrome [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKKLSIVAAVVCTMLAPLWSSPAAAQFAKPQDAIKYRQSALTLMASHFGRMQPVMRGQAPYDAAQIKANVDIFKTLSTLP
WAAFGPGTEGGDALPAVWSDAEDFKQKQQRLADNVAKLSAAADAGDYDKVRAAFGDVGASCKACHDSFRKKK
>SEQF1086_CAE43162.1 adenylosuccinate lyase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQIADQLTQLNALSPLDGRYASRAGALRGLLSEAGFMAHRVEVEVAWLVALSDAGLPELPAFPAAARERLAALVRNFSEA
DAARIKDIERVTNHDVKAVEYWLKEQVADDAELARAAEFIHFACTSEDINNTSHALMLTRARAEVVVPQLNQVLAKLNEL
ARTHADQPMLSRTHGQPASPTTLGKEFANVAARLQRAVAAIEAVEPLAKLNGATGNYNAHLSAYPEIDWPAFSRNVLAGL
GLIQNRHTIQIEPHDWMAALFDAVARANVIVLDLDRDIWGYVALGYFKQRLKEGEVGSSTMPHKVNPIDFENSEGNLGLA
NAVLRHLSEKLPVSRWQRDLTDSTVLRNLGVGLGYALVAWDACLRGLNKLEVNAAAIDADIDACWEVLAEPVQTVMRRYG
LPQPYEQLKTLTRGKGITEEALREFIGGLALPDEPKARLLAMTPRSYIGLAAQLARAV
>SEQF1086_CAE43163.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLIGSLTSPYVRKVRVVMAEKKLDYQLELENVWSPDSQVQKYNPLGKVPCLVMEDGGALFDSRVIVEYLDTLSPVARLI
PQPGRERAAVKCWEAIADGLLDACVTVVRERLRPAAQQSPEWIERQYGKVRASLDAMDHSLGENAHCMGVNYSLADIAVG
CALGYLNLRFADLDWRADHANLARLYEKLSARPSFVDSMPPTA
>SEQF1086_CAE43164.1 putative integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDVVMLICLLALGAVVGFAAGLLGIGGGMLLVPFLTMLFAWQGMPGDLVVHAAIATSMTSILFTSVSSVRAHQKRGTIQW
SIVWAMAPGIIIGGLLSGGAVFAALSTAWLSLFFALFVGYSGWNMLRSKKPKASRQMPGIVGTSAAGAGIGFLSGLVGAG
GGFLSVPFMVWCNVALHTAVSTSAALGFPIALANSVGYVISGLNESVTRPGMLGYIYWPALLALVATSVLTAPLGARMAH
RLPVGTLKRVFATLLFALAAYMLTKAWQAFMV
>SEQF1086_CAE43165.1 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPSNPTRKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSEYCSTRQDLLDAASVADLVGVEFEYVNFAAE
YKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGAEHIATGHYARVRTVETPAGPRHQLLKALDDTKDQSYF
LHRLNQVQLARTLFPLGELRKTEVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRYLPSEPGPILTPEGQRVGTHHG
LSFYTLGQRKGLGVGGVKGRQRDDGTAEAWYAARKDLARNVLYVVQGHDHPWLLSAQLQAQDASWIAGEPPAAGAYGAKT
RYRQADAACRLDQAGGERFALAFEQAQWAVTPGQSAVLYDGEVCLGGGIII
>SEQF1086_CAE43166.1 putative LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRFCPSLTDLQAFEVAARHNSFTRAAQELCVTQGAVSKQVKHLEEFVGVELFLWIRQGLVLTEAGRSYLKKIRAGLGQI
EAATLELIAHQGRGGTLHLTAMPTFGARWLIPRLAAFRRLRPDIHVEFLPHRQGYDFSTPELDAAVRFGEGIWPGSGADY
IVGRDVVPVCSERLVPGGCQDAADLLAYPLLHHTSAMEGWREWFEQAGCDTRRSLEGARFDQYSLLSQAAAAGFGVALIP
RCLIEDELRDGKLHVPIQLPIRARQGYYLCYPEQKASSPTLQAFRGWLMEASSEAEPRPDQLAAAV
>SEQF1086_CAE43167.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQRRNVILGLSLAAILAAPLAAGVAHAQDAYPNKPIRLIVPFPPGGTTDIVGRLFADKLSKELGQTVVVENRGGAGGSIG
SAFVASSVPDGYVLGIATVSTHGINPAIYTNLPFDAEKDFTPISNLAAVPNIMVVNPKVPAKNIEDFIKLAKSQPGKLTY
ASAGNGSVSHMMGEMFKMASGTDLMHVPYRGVGPALNDTLAGQVDVLYDNLPSSLPHVQSGALVPLAVAAPQRVAALPNV
PTFAEAGLQPVNDSSWFGLVAPAKVPQPVIDKLYATVVKVSAEDDVKKRLEGLGAAPVANTPAEYAKQISEEIAKNKRIA
KEANVKID
>SEQF1086_CAE43168.1 putative hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFITQPLSYRLDLPTEYPHAQSSTPLVLDSPHSGAAYPPDFAPSVSAGALRTAEDTWVDDLWGDAVGLGVPLIAASFPRS
YIDANRAVDEIDPLLLAQPWPEAINESPKVKLGKGLVWRMLDDGTPLYDRKLSVDEVRHRIEACWKPYHRALGAVLDQAH
ARFGKVWHINCHSMPSVAGAFATDQPGLVHPDFVLGDRDGSTSDPAFREFVAAWLRERGYDVSVNDPYKGVELVRAFGRP
ADGRHSLQIEINRKLYMDEVSLRPNDNYPRLKAHLRELTAALVDWTRAQAA
>SEQF1086_CAE43169.1 NAD(P) transhydrogenase, subunit alpha part 1 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQIGVPKETRDGETRVAATPETVKKYIGGKHSVIVERGAGVAAHYPDSAYEEAGATLGTAETALGCELVLKVRAPADNEL
PHMKRGAVLAGMLDPFDADDLQRLAAAGLTAFALEAAPRITRAQSLDVLSSQANLAGYKAVLLAANYYGRLLPMMMTAAG
TLKAARVVVLGAGVAGLQAIATARRLGAVVEASDVRPAAKEQIESLGAKFIDVPFETDEEREIAQGVGGYARPMPPAWMA
RQAELVAQRCKQADIVITTALIPGRPAPTLLTAETVQAMKPGSVVVDLAVERGGNCPLTQKGLVADHHGVTLVGLTNLPG
MLPTDASALYARNLLDFLKLIVDAEGALAIRRDDEIVTACLMCEGGQVTRRS
>SEQF1086_CAE43172.1 putative transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHYRHSFMTQTPPRAPRGGAGAALVAGQTLIDLSRHSAARYYLSVPGKERPVFQGVFDTSEVAPGVVAHRVDIRDLQGAA
VRAELKPGLRLALTIGGRADVSIGHCRLPRGPQGGDGVQGALVAVAAPATFARQSRRGDIERTVSLAFSHDWLARRLGAD
GAALAAFAQRHLAMHCWPASAQAITLAEQMLRPPALAPALWRLYLESRALDLLVEGFDGLEAGAGAAPQAGRGGLARRDF
LRMARIRELLESGEADAWSLEELARHACLSVNTLQRHFRAAWGMTVFECLRGARLTRARLGLERDGLSVAQAACLAGYTS
AANFATAFRRAFGVTPGQLRARR
>SEQF1086_CAE43173.1 ferric enterobactin receptor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTPRFALHYASASVLLAASGLAMAQTATQIHDPSQVQQMATVQVLGTAEEEIKESLGVSVITAEEIARRPPTNDLSDLI
RREPGVNLTGNSASGARGNSRQVDIRGMGPENTLILIDGKPVTSRNAVRYGWNGDRDTRGDTNWVPAEEVERIEVIRGPA
AARYGSGAMGGVVNIITKRPADRATGSITYYTNQPEDSREGNTNRVNARISAPISDTLSMRLYGNYNKTNPDARDINAGH
ANTSDNGNPSTAGREGVINQDLSALFSWKADSHNTVDLDMGFSRQGNLFAGDTMNNANSDFSDSLYGKETNAMYRENYAL
THRGVYDWGTSRASVGYDYTRNARQREGLAGGPEGAPTAGGYDTARLKNWRAAAEASVPFHLGFEQVATVGVEWLRESLE
DPAGTRQTYTGGAIGGTAPADRDPKSRQTSYALFAEDNIEIDERTMLTPGVRLDHNSEFGSNWSPSLNASYAVTDALKLK
GGIARAYKAPNLYQSNPNYLLYSRGNGCLASQTNTNGCYLVGNEDLSPETSVNKEIGFEYDPGTWRTSMAYFRNDYRNKI
VAGTDVQYRLANGARVLQWTNSGKAVVEGLEGNLFIPLASNLDWNTNFTYMIQSKEKATGEPLSVIPEYTINSTLDWFYT
PQLSFQANLTYYGKQEGPSTNVRTGVELNGDGRQTISPYALAGLSMGYEVNRNLKFRVGVSNLFDKQLYREGNASSAGAA
TYNEPGRAYYATATVSF
>SEQF1086_CAE43174.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATALLPRRAAPWLLAAALRPAASRAQPAAVPSEPPERARARLGVLGLVQQTVLARGGGLRNVRLTVAVPAGQPPAAGWP
VIYMLDDGAALQALAQANRADLARQAVLVGIGYDSPGRIDGQARAWDYTPALPGTGVHGTPDPRSPQRRNGGAEAWLEFI
ETRVKPWVAGTTRVDTGRQTLYGHSYGGLFVLHTLLARPQTFQRYVAASPSLWWHAPYMMRRASDAGDFSHGAPTLHLMA
GGAEMLRRPGAAPLATAGATTRLAAILAAKPGLSVTLREFPGLSHGAMLPASAQAAAELAAQP
>SEQF1086_CAE43175.1 glycolate oxidase iron-sulfur subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQTNLASWARDTDFGEEADAILRRCVHCGFCTATCPTYQVLGDELDSPRGRIYLIKQLLEGSEPTQATQQHLDRCLTCRN
CETTCPSGVEYGRLVDIGRQLVHERVPRRLGDRLRREALRRGMNSAWFGPAMRLGQMVRAMLPQALRRKVPAARPPGLLP
DPSRHERQVLMLTGCVQPSMMPTIDAATLRVLDAIGIGARLAPGAGCCGAVNFHLDAQGEALAQMRANVDAWWPWVERGE
IEAIVMNASGCGAMVKEYAHHLRRDPDYAERAARIVALVKDVAEVVAPHAAALRERLAPGPRAAFHPPCTLQHWQGLRPL
AERLLVELGFELAPFGESHLCCGSAGAYSVLNPDIALTLRDRKLGEIAAAAPTVIMSSNIGCIGHLQSGTDTPVRHWIEV
VDQRLATQG
>SEQF1086_CAE43176.1 glycolate oxidase subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDFVLSELCDQVMTARAGHKPLFIVGGGTKGFYGNHRAVTPQDGHCLLDMTPYRGIVSYQPSELVVTARAGTPLAELEAA
LAEHGQMLAFEPPHFGPGATLGGCVAAGLSGPRRMAAGAVRDFVLGARLLDSQGHILAFGGEVMKNVAGYDVSRLQAGAQ
GIFGALLEVSLKVVPRPAVVESLRLPATQDEALRWFGQWRGRPLPISASCWTADGAADGGGAVVLRLAGAPPAVQAAREV
LGGELLDAAQAHDWWESLREQSHAFFDRGMPLWRLAVPPTAPALALGPTLIEWGGGQRWLSGHYDAQAVRAAAAQAGGHA
TLFRAAGRAAPADGVFHPLSDGVAAITRRLKQELDPAGLFNPGRLVPEL
>SEQF1086_CAE43177.1 glycolate oxidase subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTLVDAGFSPRREGFAPQPLIEALLSILPAHCVLHREEDTRPYECDGLSLYRALPAVVALPEDEAQVRAIMQLCKRMNV
PIVARGAGTGLSGGAMPHAQGVLLGLSKLNRIKRIDPAGGTAVVEPGVRNLAISEAAAPYGLYYAPDPSSQIACSIGGNV
AENSGGVHCLKYGLTVHNVLRVRVVTIDGEIVELGSEAPDAPGLDLLSVFVGSEGMLGVVTEITVKLIPSPACAQVVMAS
FASVEAAGNAVTQIIAAGLIPAGLEMMDRQAVHMVEPFVQAGYDLQAQAILLCEADGTPQEVAHEVAMMEAVFKRAGATS
LQVSGSEAERLRFWAGRKNAFPAAGRVSPDYYCMDGTIPRRHLARVLGAIEQMEDDFGLRCANVFHAGDGNLHPLILFDS
NKPDEVERAEKFGAAILELCVQVGGTVTGEHGVGMEKINQMCVQFSRDELDAFLAVKRAFDPPGLLNPEKVIPTLARCAE
YGKMHVHAGEMRFPDLARF
>SEQF1086_CAE43178.1 putative oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAPQPAEALRRPVPPACLDALKARFGDRLSMAHAVREHHGRDESPYPPMLPDAVVFAHSTEDVAEVARLCNEHCVPLIP
YGAGSSLEGHLLAIQGGISLDLSQMNQVLAVNAEDLTVTVQAGVTRKQLNEEIRDTGLFFPIDPGADASLGGMAATRASG
TNAVRYGTMRENVMALTVVTADGRVLRTAGRARKSSAGYDLTRIFVGSEGTLGIITEVTVRLYPQPEAVSAAICNFPNLD
AAVQSVIEIIQMGVPVARVEFMDEASVRAVNMHSKLTLRETPLLLFEFHGSPAGVQEQAETVQAITAEHGGMDFEWAERP
EDRSRLWTARHNAYFAGLQLRPGCRASTTDVCVPISRLADCVRETVDELERASFPYTIVGHVGDGNFHVLMLLDADSPQE
WQESETINHNLVRRAIAADGTCTGEHGVGLHKMQFMAEEHGEEALALMRSLKHAFDPNNILNPGKIIAW
>SEQF1086_CAE43179.1 adhesin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNKHCFKLVHSPALGMLVPVHEHRTGRPLRGARRAMAVTLAVLAPAGAAAAGGIAPQGATQVAPARNGVPVIQIAAPDAT
GISHNRYTEFNVRQPGVVLNNSTAEGVSALAGRISGNPGLRGPARAILNEVTGVSPTTLEGALEVFGPAADVLVANPNGL
TANGLSTINIRGLTLSTGRPGAGGVLDVARGRLEIGPHGVNTAGLSYFDLVARTVALHGPVGAGDGQPPADINVVAGANR
YDYGRRTRLQPTGRPAAAPDASAGHAIDGSAAGAMYGRHITLVSSDAGLGARHRGLVSAAGHIAIDAAGGVSVQALAAHA
ASDGTAGSATIRAGGDALIGSVIAFGGDIEVRAAAGRIATHGALNAPRGRVRLQAGDALAVHGPVQAARVALATRGDASI
AADLHATRDGVSLAARNATLAHARVIATPPAAQARPSTPAIDIALSGTLTLRGTLHDADGDGRRIEGTSVALANGMPVIV
DTRQPQRAVPNALLASDAGLYAASQPISIRAAGLRNEGGAIDSTGTGQGHIGLRIGGPAVNLGYIATHGTLEATVDGTLE
NRMLLSAAALRVATHDLSNHAAMTASGPDTGTPALDLSVQHRVENAGSLLAARGALRLRGGAELSIVNQPAGFMLAHGQD
IAAARLANAGTLSSTAAGTLTLAGDLENSGVLQSAHALRVQARRIASRGRLATATDGAGLTLAADENLTLAGRTSSAGAL
LARAGAALVNEGIVTARQDLSWRARDIVNDAAGNVVARSVDMRAGQGFDHRGAIGSVTDLVLKAARIDSAGVLRANQDID
MHADDAMRLKAGARTLAGRDLALAADQLEQSGMAQAGRTLTATAGALENDGLLDAADAKLRTTRAFVNRGQIQADMLQAQ
GPQIRNAGVLRTGALLALQAAGRLENTGGMAASGSLSIAAAGPFANSGTMGANGDASFALSSFANTGSISVGGDLALRLP
DVELTLDADHRLPVSQGTTLLQVASLDNRARSETPGRLSVQARGAIRNQDTLAAGQGLWLESAANDIENGAGALLWSGAD
LRLRGTRIINREAAIIESAAGMVLDARAEIDNGLGIIRAGGDLWADAPLLRNSGRLGGRIVPAGDAAIGGGTYDHYHSAA
VVWHELFTAGAAGIRVPRYDGKDVRVAQSVVQAGGNLHLNQGEQKGRQARVSNQGRIEAAGMALVDGNVDNASLHLSLSV
DEYLRRPLAAPIVLRATDSRAQHVIPAFWKFHTLYEFLDFLLSNNEPRYIWGYYRTWPEWAFQTLRNLDLGYAGAPDPTA
PPVPRPPVLDPQAKASTTPAAQALVAQYHKDLAEYATALEAAQRAEAIRTARQRVDGALRARYGEKLAQLKTRTPEVDAA
VAALAQTIFDARAKPAAEVEKLIAAALCSPRAQACAAGTARIAQLLDQASLPPRRPAVALFAQAMAAVLGPDWHGPVGHA
TLMARYADFKRRVATQGRAAGGELAFYPAQQTVLAGGAGLVLSGGRVTNGENVAGLLARNMTVHIGEQRIETPRGSIDAI
RHPDAGPAVTVKDSIHALLENRRLFARTAPARAAAGPGGPDVPATPPGLPQPLYETRLSYLDQSHYYGSQYFFDLIRYRP
DRPLRTIGDNYFETRLIREQIARAMGGHEYRNAVRGLALVQSLMDAAPLAAAELGLRVGQAPTAEQLARATRDFVWYVRE
TVDGQEVLVPRVYLTRATRTAASATREAGGALMASAGTVLADTGGAAIESGNAAFLGKDVILDAAGGAVRLINDKGIAGG
ARALGTLAIRGGDIAIQGGLLDAAQAYLTGERVSLAASARYDAHGRLVSRHDARLNGRADAAGLLYIAAKRLDSAGATLS
GDHVRLEADKVRLGGLYDVDSSYSQTSRYGLGKAWWLLSSQTETATASHARFQGTTLEGAILSGRATDMDIEGSSARFQQ
TDLQVAHDFKARAAADYAYAERAKRVDQLFLRLSAGAGGYEAGIDLSAQGGLQAHAGRGQTAGAHASAGFESTREYERSR
MTHYRNADLNFGAGLLAVGNTADLGGADINRDRYGQGASTASDAIPGDLLRIRAARVAATKYLDVTDSLTASSYLRASID
GALTSSVATAATRLGDTLAEARQENSQVHAGQMALQMAGEATQLATTDTAALSISATFAAGYADSHRNTQTENTNYFGGN
LDIRATEQDIDLAGTKFSGADWLALSARRDINVRAAASRYQESGEQHDLQLHQTINAGANAMQAAAGVGVTAGLSGSHMV
RHGAGQTYEGSALRATQLHLQARDLNLDASMAQATRMDLHVARDLNAISRQDEQRFAQTGGNWEVSLGAAIQNRTLVAPV
GTIGAGVRHEHDYQALTQNGQAGLLASQGLRATVGRDARLRGAIIADASNQGGMDIAGRIHAEALHDYRDKDGFETGASV
GISSTTLNPTLSLTLGRPAVEQYRAVRQATIAMGAAPGAPRYTARGGVSGRLNTDSGQAVVVQRAERWASARTEFSFDQP
SRRDKADSGSPGARPAHPGAAKAPALPLARPLTSVLAGPSSTSPTANPAAAPGIAAQPAPASPGRDAPKPDPYANRVIVQ
LAQDDVATQAAQALFHKHAEQSDWYRQADDGSLHPVHPLRAAAAGPTKIQLVGHGSADRQALSGHDGHAVAGIVQQLRER
LPPAAALAKVALVGCDTDCASGASLRGDVAQRLAADGAQPAPAVSGYIGRLEVDAAGRKHAVAQGGLGDVDPEARAQGTQ
PVPRVFSHGPVNIAQSGQARQLVIDGHGSWVRPDRAVAPSYSGTVRLPAGTRMHFYSDDGQMVSAIPLRNIPDNPERAWR
AQPFSERISSERIRRVANAAKVPFDVARQGFETSTQVREIAAPGTAVKNYLLTPIDPQRDAALAFHQSRSQADVDLASAA
PGKGALLSDLLLAVAASGHSYPLIHYTCCRGEFQRPGSDTPSPQLPPHELLIRSWLASSAPVHALPLPPSSRGTLPGADP
YALRSIVQLGTDAATARAAAALHGKHPANSNWYLQTRDGGLEPVRQAAGPAAGPHKVQFVGHGDVYHGVPLLGGNAAATL
ADLLNQVEQHSPAGARLDKIALVGCDTDCTGRPSLREPFRQSLAARPDAPALTVTGYIGRIDVDSAGRKRRVATGGLGDR
PPADEPASPRPPAQPAAPGPGAATPSSAPSAPVAARLFTHGPITLSQSENARQLLIQGHSGWTRPPAGTSGAGEIPAGWL
RLPSGTRMHFYSVDNQQTSGVPVQAIPRNPELAWLGRPFVREFPASVIRQFAHARQAPFDVARAALVESTRVQEVAAAGA
LVKNYRLAPAIDPLVTGVEQFHAQRRQGDVDMAVARERASLSDVLAAVEASGHHYPLLHFTCCRGETTPPGAPPDAVAPP
LAPVSARYLQQWRERSGVAQPRPPTPLGAEPPVHGPDRYGHRTIVQLGSDALTETAARRLFRKHAGNASWYSQDASGQLT
QVRAPAAPATGPQKIQFVGHGSILEGMPLLGGNNAAQLARMLPAIRQGLPATARVEKITLVGCNTGCASRASLRNLLNHY
LITTAGLSAEVKGYAGRVDVDAAGHKQIVEQGGLGNTPPPEAAPAPRVFRHGNVTLSQSGEARQLTIVGHGFWPRPGPAD
QPDGASPPGWVRLPANTSMYFYSRENQLVGGLPSQAALRAPMLAAQGQGAAELFSRAVIRGFAHRHQLPFDVARHTLVGA
TRPQDIGEPGALIKDYVVSPAPETGLGAIEDFHAARQQPDMDLAQAAPGSEIRLSEILQAVAQSGVRYDLIHYACCRAEI
PATDTPTQQVATPVPAPDKLVIQQWHSGAGAARPPSPQAQAQAPYGPDRYAHRVIVQLGSDTVTESAARRLFRKHAATSL
WYGQTLEGTLMLKQGGDTPAAGPLKIQFVGHGGPRYSMPLLGGNTPAELAQMASTIQHAGPPSQLEKVTLVGCQTDCVAR
PSLRKLFSTALATEHGLTPAVTGYAGRVDVDAAGRKRIVEQGGLNEPRAQAGASTAAPNRIVQSVAHGVALSQSGQARQL
VVLAHGGWKDKTTSRYLRRVRGDGYTELPANTRIDYYTEDGIPTKGFAVYQEVTARANDTYTGLQPTLAISPADLEALAR
MHNTSPQALTDAMLASAVGRRESIIGAATMKDYALYYHEQFALNFLRRHNADGSSADVDLAIITEPTHKRHLSDVLKAAG
ESGAHYDVVHFGACRVGRCRNAAAEMGASATSRLPP
>SEQF1086_CAE43180.1 phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSHNTDDLRIREIKELNPPAHVMREFPCSKDVSEIVYAARQGMHRILHGMDDRLIVVIGPCSIHDTKAALEYADRLKPVR
DRLAADLEVVMRVYFEKPRTTVGWKGLINDPDLDGSFDINKGVRVARELLLDINSRGLPAGCEFLDMITPQYIADLVSWG
AIGARTTESQVHRELASGLSCPVGFKNGTDGNVKIAVDAIKAASQPHHFLSVTKGGHSAIVSTAGNEDCHVILRGGKAPN
YDAASIEAACQDMAKAGLAQRIMIDASHANSSKKPENQPLVVDDVANQIEQGDARIVGLMIESHLLGGRQDLVPGQALTY
GQSITDGCIDWDASVQVLERLAHAVRERRRASLSAGK
>SEQF1086_CAE43181.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLIDPAISALATAKNLLLDPWGLTEADLARALGEIFTHKVDYADLYFQYTRSEGWSLEEGIVKTGSFSIGQGVGVRAVS
GEKTAFAYSDSLSADALLSSARTVRGIARQGAGKVKVAAQVPPVDGRSLYADIDPLVTLTAADKVALLERIERMARARDP
HVIQVMAGLGAEYDVVLVAGSDGRLAADVRPLVRLSLTVIAERNGRREMGHAGGGGRTGLAYFTDDILRDYVERAVHEAL
ANLEARPAPAGEMTVVLGSGWPGILLHEAVGHGLEGDFNRKGSSVFSDRIGERVASPGVTVIDDGTLPDRRGSLNIDDEG
NATQRNVLIEDGILRGYMQDTLNARLMKTAATGNGRRESFAHLPMPRMTNTYMLGGATPPEEIIASVKRGLYAVNFGGGQ
VDITNGKFVFSASEAYMIENGKVTYPVKGATLIGNGPDAMNRVSLIGNDMRLDSGVGTCGKDGQSVPVGVGMPTLRMEGL
TVGGTA
>SEQF1086_CAE43182.1 putative hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTGDPRTDTTPSCRVAAIQMVSGPDVDENLAQAAELIGKAAQDGARLVALPEYFCFMGHTDTDKLAIKEESGYGKIQSFL
SNISSQYGIWVVGGTLPLTSPDPQRVFNTTFVYGPGGQPAARYDKIHLFNFQRGAESYDEAIAIRPGKAVQVFDGPCGRV
GLSVCYDLRFPELYRAMGTVDLILVPAAFTYTTGQAHWELLLRARAIENQCYVLAPAQGGRHSTGRRTWGHSMLVDPWGQ
VLDVLPEGPGVIGGTIEAARLAEVRASLPALRHRVL
>SEQF1086_CAE43183.1 putative DNA-binding protein (histone) [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPRENYAVLQAKIEKEITKLKHKAEALHTRRRKPVIASIVKSMREYNITPEEIAAAFGSAKSVRAPSAPVRRKAGAPVAK
RAVAPKYRHPQTGETWSGRGKAPRWLAAEEAAGAKRDSFLIRD
>SEQF1086_CAE43184.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43185.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSEHPFHVLDVPGAPIGEADLHAYADGQLGDARRAEVAAFLAAHPEAHARVEGWRRQNAGLRALLDPVLEEPLPLRLPLA
PPPARYRWGMLAAGLAIAVTSASAAWLVRGELDARQAVAQRQAAAEGMVFARRAAVAHAVYAADVRRPVEMGAEQEQALV
TWLTRRLGAAVHAPNLAAAGYHLMGGRLLPGGQGPVAQFMYGGPGGQRLTLYVTREAQGDQTAFRFTQDGPVRVFYWVEG
KFGYALSGELERDALLKVAQEVYRELG
>SEQF1086_CAE43186.1 putative RNA polymerase sigma factor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRPEDEALIVACIPSLRRYARGLTGERDRADDLVQDTLERAWSRFSRWQRRGELRAWMFGIMHNQFIDGLRAQKRQADYG
AETEIPELPVRATQADRLEVRDLDRHLQRLPADLRAVLLLVAVEEFTYREAAQVLEVPIGTVMSRLSRARERLAALLQAQ
ARAPAASTVQRIRAT
>SEQF1086_CAE43187.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSIRHTAALLLVSSLYAGAALAQAPAMEKGGMLVDAKGMTLYTFDKDAGGKSVCNDQCAKNWPPLMAAGDAKAQGDWSIV
KRDDGSSQWAHKGKPVYLFAADAKPGDKTGDNKNNVWHVIKP
>SEQF1086_CAE43188.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPSFDVVSEVDKHELTNAVDQANRELSTRFDFKGTNASFELEGYVVTQVAPSAFQLKQMLDILRGRLSARSIDVRCMDVA
DPLENLGGARQKVTIKQGIEQAIAKKLIAAIKASKVKVESQINGEKLRITGKKRDDLQAVIALLRKTDVDLPLQFENFRD
>SEQF1086_CAE43189.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLYASLKFLHLLSIILWVGGMAFAHCFLRPAVAALEPPARLRLMHDVLGRFLRATQYAVLIVLATGAYMMAQAMGAGLAR
PPVGWHVMAGLGLLMALVFVHVRYVLFRRLARAVAAQDWPAAGAAMAPIRGWVAVNLALAVVILAALMLA
>SEQF1086_CAE43190.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATEIYVNLPVADLPRSVAFFKQLGYAFNPQFTDENATCMIVDDNIYVMLLVEAFFQTFTPKAVCDAHTQTEVLLCLSMD
SRAEVDRMVRRAVAAGGKTYNEAKDHGFMYQHGFQDLDGHIWELVYMDPTAAPPPGD
>SEQF1086_CAE43191.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPRIACSRQPSEPSAAGGRLWRPLRALLAALALALLAACGSTSGGSGGAFYRVQSGDTLHSIARKHGQSVGDLVRWNKLA
NANRIEKGQLLRVKPPGTGGSASPPPRAASGKSAGGAPAKPAAPIRGITLIWPADGKVTRQFNGSSVLGITIANSAGASV
VAAAGGTVAYASNGLRGYGNLVIVRHDGSFLTIYAHNRKLLVKQGQRVSQGQRIAEMGDTDSSQVNLYFELRRDGKAVNP
AGALPRR
>SEQF1086_CAE43192.1 putative chromate transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPASPPPPAPGTPPSQAEAGGVGEVFGAFLRLGLTSFGGPVAHLGYFRHEFVQRRRWLDDAAYAELVALCQFLPGPASSQ
TGMALGLARAGWAGMAAAWIAFTLPSALFMLAFALGLGQLDGLAASGALHGLKLAAVAVVAQAVWSMGRSLCPDRARQAL
ALGAAIAALLLPAAWMQVGIMLACGLAGWRLLPALAAPAGTALAVGVGRRTGLCALLLFALLLAGLPLWAAASGSPAWQL
ADGFYRAGALVFGGGHVVLPLLQAAVVPGGEVSQAAFLAGYGAAQAVPGPLFSFAAFLGALLPAPLGGWPGALACTALIF
LPGALLLVGALPFWNVLRGRPAVRAALAGVNAGVVGILLAALYDPVWTGAVASRPDFAIAAGAFGLLAWGRLPPLAIVAL
CAAAGALAG
>SEQF1086_CAE43193.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTLVLRAKRWLYLLHRWMGVGLCLLFVLWFASGVVMMYVGYPNLTPAERLAHLPGLDAAQVRLGPAQALRAAGLEQAAE
IRLAASRAGQPFYAVVPLAGGRTLRVDAASGQLAGRATPAQARASALAYFGARHAAREGGLVSEDAHTHTRTLDEHRPLY
VFEMDDPARTRLYVSSSTGEVVRDAPRLERGWNYVGAWLHWLYPLRGAYWHDIVVWLSVLGVALTVSGTVVGLWRWRFAR
PYASGSRSPYRERFMRWHHIAGLLFAATTLTWIFSGLMSMNPWQVFGTRATQLDRAAYRGGPLQADNLPAGPAVAMPARK
LVWTRVAGQTLLQVYGAAGAPALRTADGAAPRTLAPATLGVALGRLLPSAAPPRIEVLDGYDSYYYARAPHTMLGHVEKP
LPVWRVVYDDPRGTWLHVDPRSGEILGSLDRPRRVSRWLFAFLHSWDWPPLLQRRPAWDAVLIVLSLGGLLLSGAGVVIG
WRRVGRKLR
>SEQF1086_CAE43194.1 putative TonB-dependent receptor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKQTSLYYATLGLVGLALAAPARAQEQSLPVQLAPVVVHGAPEANGPLNLDAVDSTGSRLGLTLRETPASVTVINREQIE
ARGALDTQEIARGIVGVDNASPPGSAGSVSYRGFSGSQVSQLFNGISVQYDVVAARPIDSWIYDRVEAIGGPSSFLFGAG
AVGGAINYVTKVAQRDTFYDGQLRLGSYGARQASVGLNRQLAGEPGGRGQYLRIDANANASDGWVDGNRSHAEQVAASLL
SDLGERVTHTLALEYQHEMVHRPYWGTPLTTDGDGVVRGEGHIRGGTRWKNYNVDDGRYEQSVWWLRSLTEWQASDRLSF
RNTLYYYRADRDFQNLETYRYNPGNSQVLRSGALLQRHEQRLLGNRIEGLYHGSLGGLRSDWSFGADYSVNRQTRYPTSV
AGQVDSVDPYEFDPGEFYDIPGMRRGHVPDRDNKVRTLAFMLENRTEVGGGVALVTALRHDIIDLDLTNRRAASAASPGH
ASRRYNPTTGRVAVNWEVSPGATLYAQYATAADPPSGVLSTATFADVLNNDKLTTGTQVEAGGKFAFWDGRGTATVAVYE
IKRKNLATPDPLNPGSSLPVGSQSARGLELAGGLQLTRALSLQANLALVDPRYDDFSQNVGGVAVSRNGKVPVNTPRRLA
NVWLDYAFAPDWRASLAARHVGKTYADAANTVWAPAYTVFDAALSHRIDRHFSVTARVRNLTDKVYAASVTGAPMYYLGA
PRSVELALQARF
>SEQF1086_CAE43195.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIQTGSRSRRLLARPLAWIALLAILWAACAPLLMQMAPQRHAPLALSVDYCTEQGTATVQLPLLLADAGQADEQDGHGAH
HDGLGHLEHCPFCRHAQGDLALLPVMPRVQPLPARAISYPPLYYVARASQHAWTGAQPRAPPAAA
>SEQF1086_CAE43196.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKKSTTAMLTLALSSAAVLAAAPAAHAADMEKCYGVALKGKNDCKAGAGTTCAGTSKVDYQGNAWKQVPKGTCEQTKSPT
SPTGFGQLEAFKEVKTGS
>SEQF1086_CAE43197.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNVPAMPARASRPAPGLPARAGLGFKPEHYATLVEQPPDLGFFEIHAENYMVPGGPAHAQLAWLRERYAISVHGVGLSLG
GHDPLDARLLAGHRQLQRRYAPDSISEHLAWSRHDGRYFNDLLPIVYDDAALRRVCAHIDQFQQCLGQPILLENPATYVR
FEASHIDEAQFLCELVARTGCGLLLDVNNVYVSAVNHGFDARAYLARLPLAAVGEIHLAGHARQRDAHGRAVLIDSHDAP
VDEAVWDLYEYTLALTGPVATLLERDGNIPPLAGLLAETGRVTACLARGLALAA
>SEQF1086_CAE43198.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHPQAAFARALLDPLAPCPPGLRRAGDADPAQRYAIYRNNVVASLIQALADTFPVCRELVGADFFHAMAHAYVARRLPRS
PVLARYGGAFAAFVAAHAPAASVPYLADMARLEYLRVRAYYAADAVALDAAAAGARIAALRKPASARLRLHPAARALVSP
YAIHALWAAHQGALDIAEVDPYAAQGALVLRDPAEAVLAIPLAASAAAFVRALRAGLPLGAAHSQAADPGLALNHLLALL
IRHGAIISIEE
>SEQF1086_CAE43199.1 putative integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRFACRLHAHAIRCFERIPHCLIALLGRCSIAATFWLSGQTKVEGFAVNALAGEFDLGWPRLSESAISLFRDEYQVPLL
PPELAALLAASVEHILPVLLILGLATRWSALGLLLMTLVIQVFVYPDAYATHGVWATVLLYLVARGPGCVSLDAWLARRR
ARRQA
>SEQF1086_CAE43200.1 putative membrane transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPSLSAARAHRSLGWSLALLAFAQLIYSLDINIVFVALPEIGAGLGFSEQTLQWVVSAYTVFCGGFLLLGGRAVDLLGQR
RMFIGALWLYALSSLVGGLAWNPAVIVIARAVQGIGAALLFPSTLSLINRLFEEGPPRNRALAIWGGAGASGLTLGSLAG
GVLTSAYGWPSVFFVNVLLAGIAIVAAFLVIPKDAPRAARRSFDMPGALTATAGATLLVYALVQGPEDGWLATPIFASLA
LAAVFLLAFAVIESRSRDPLMPMRLFGNGSLVVGMILTFIFMGTFGALPYFLTLLFQNVQGYSALQTGLAFIVPSLAIFF
GTQLGARLANRMSARSTLVAGFVTGIAGTLALASAAFVGAPYALILPGLVVSGIGQGIVWTAMWIVAASGVAHHEQGIAS
GMASTTLNVGNAIGIAVLVAYANRGIGGLHGDALRAGLAAGAQHAFYLAAAGLVLGLLVSLAFSPRAGAGARVGAA
>SEQF1086_CAE43201.1 putative regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLPNHPERGQIRLENVLNALGNPLRLTVVRALAAGGECSCSAVLQGIPKSTLTHHWRVLRDSGVIWQRPNGRENLLSLRR
DDLDARFPGLLDTLLGAVHHDALTEETTARNLAPR
>SEQF1086_CAE43202.1 cytochrome 0 ubiquinol oxidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSHAVTSEDHGHADHGSLKSYLIGFAISLVLTFGSFGLVMAGTVPRGIALAGVVVLCVAQLLVQLVFFLHMGGSKKQRDN
VTTFVFTILIIAIIVGGSVWVLHNMNANMMHPMPG
>SEQF1086_CAE43203.1 cytochrome O ubiquinol oxidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTNAVATHPHAGDHHGHHDDGSKTVLGFWIYLMSDLLIFSVLFATFAVLSSATAGGPTGKDLFDLSFVLGETMLLLVSSF
TFGMAMLNLHAGSKGKVIAWLWVTFLFGAGFIVMEVYEFHHLLSIGAGPQTSAYLSAFFTLIGTHGLHVTFGLIWILVMI
HMLSRYGIDPITTRRLSCLSLFWHFLDIVWICVFTFVYLLGAL
>SEQF1086_CAE43204.1 ubiquinol oxidase polypeptide I [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFGKLSLEAIPFHDPIIMGTMVVVILGSATLLGAVTYFGKWKYLWTEWFTSVDHKKIGIMYIIVALVMLLRGFADAIMMR
TQQAVASADSAGFLPPHHYDQIFTAHGVIMIFFMAMPFITGLMNIVVPLQIGARDVAYPFLNSLSFWLFMVGVVLLMLSL
FVGEFAATGWLAYPPLSGLDYSPGVGVDYYLWALQLSGLGTTLSGINFIVTIMKMRAPGMALMKMPVFTWTALVTNILIV
AAFPVLAATLALLTLDRYLDMHFFTNDLGGNVMMYVNLIWIWGHPEVYILVLPCFGVFSEIVATYSKKTLFGYKSMVYAT
ASIGVLSFLVWLHHFFTMGAGANVNAFFGIMTMIISIPTGAKVFNWLFTMYRGRVEFSLPMLWTIGFMIIFVIGGMTGVL
MAIPAVSFVLHNSLFLVAHFHNTIIGGVVFGCIAGMVYWFPKAFGFKLNERLGKYSFWCWFVGFFLTFTPMYLLGFKGMT
RRLNTYDNPEWQPYLLVALVGATLIMLGIFFLLQQVFVSIRDRKENMDVTGDPWGGRTLEWSTSSPPPFYNFAHVPHIDS
LDQFWEDKENGRAYQRPAKYEDVHMPRNTAAGIYIGAFGLAMSFGLIWHMWWLAIVGFLGMIVSFVVRSYDRDVDYYVPA
KEVEEIENAYFGKLQQKAA
>SEQF1086_CAE43205.1 putative ubiquinol oxidase polypeptide II [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKHPHLTTIARTLGVGAVLLLGGCTLEVLSPKGDIGAQEKTLILTALGLMLIVVVPVILMTLYFVWKYREGSVHAQREYA
PKWSHSNAIEAVVWTVPCIIVAILAVLTWKSSHALDPYRPIESDVKPVNIDVVSLDWKWLFIYPDYDIATVNEIVFPVDA
PVQFRITSASVMNSFFIPQLGSQIYSMAGMETKLHLIAREAGSYDGLSANYSGAGFSGMRFKAIATTDQGFEDWIARIRA
TNNPLTPQAYADLAKPSERTPVTLYSTAPTGMFDFIMHNQMSKLAGVDPFNCTPATKNLIATAE
>SEQF1086_CAE43206.1 putative two component system response regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNLSEPGLLIDDDELYLRTLQRSLARQGLETRTAASIAEALRVAEDIRPSFALVDLRLGEEDSGLTLIRPLRALRADMRI
LLVTGYASVATAVEAIKRGADDYLPKPATAPMILRTLGLLKAESVTIESTMTPLHRLEWEHIQQALSETGGNVSAAARLL
GMHRRSLQRKLAKKPGPEREAQLD
>SEQF1086_CAE43207.1 putative two component system, histidine kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGSSALSFLRTLCSLRWLAIAGQAVTIVAVSSVLELDLPLRPLWLGVLVLVAFNLYASWRLRRLSDVSHVTAFAHLLVD
IGVLAWMVGWSGGITNPFGLMFLILTALAALALPSNWALATGLASLAGYTLAAIFGQPLRHEDTYTLLLGGLAFNFVISI
GVVLYFSTRLAADMRARERELAALRERFTRNEGIVALATHAAAMAHELNTPLATMTLLADEIAAQASTVDLRNDVDTLQQ
LLTLCRERIRNLAVPTEVDLVSVVGQWRLVRPTVDLHRTGSLPASLRVDPAIAHLLQALLNNAADAGEAAGEPRVDLRLD
YRDGVLTGEVSDHGAGFDPSHTLLPATSLFNSGKPGGLGVGLALSHVTVEQLGGAMTMTAAEGGGARIRFTLPLGLGRAS
AKP
>SEQF1086_CAE43208.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPDAGVAICELLWLAFVATSAGVHPPVFFIRPAMSPSPLISHRAASADLAGMVRQARQRIFLQGDLPGFDVARQIELLLG
LAESELGRFLLLYRGLNAEWTHRLVTHQPGSGALAPLERVFYERLPAVLATRERHGHFRRALQRHLRPGCVAASVPCGWM
SELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHPLAAQITLHRQDAWALDTREGYDLLTSNGLNIYEPDDARVTELY
RRFWQALKPGGVLVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFED
DRARLFPTVIARKPA
>SEQF1086_CAE43209.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKQVIGTHSAPRPHWVGDGFPVRSLFSYHSLGRELSPFLLLDYAGPAQFDATARQRGVGEHPHRGFETVTIVYEGEVAHR
DSTGQGGVIGPGDVQWMTAGAGILHEEFHSEAFARRGGPLEMVQLWVNLPARDKMTAPTYQSIVDSDIPRLALDGEAGTV
RVIAGAFGEAGAGPARTFTPVNVWDVRLAAGKQAVLPVPDGYNAALVVLRGTVLVNGAQVLRDAQMAVLERGGAGVQVEA
NNDAVLLVLSGEPIDEPVVGHGPFVMNTQAEIVQAIDDFNRGAFGRMG
>SEQF1086_CAE43211.1 putative LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQSAVSHAIANLEAQLRVTLFDRSVYKPALTPAGQALLADVRIILAKVDALRAHAHELGEGVELGLSLAVDTLFPPDAVA
HALKAMHARYPSVGVRVEYASLGGPAQALKARRCTLAVAVLERPDDQIRRRFLAPVTTWAVAAPGHPLARGEAGTELADH
LQVVVEDLSAATRGRDYGVLSPRTWRVGDMVTKLALLRAGVGWGSLPAWLVQADLRAGTLVRLPLAELGPDGAVQMRAYL
SHCADEPLGPAARSLCDSLREGAAALRG
>SEQF1086_CAE43212.1 putative integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRIWSSVRLSSMIEIIDQLGRKYVISWNMKDWHSSAMPAHRNPPMSRSLASALPAAPGAGAARHGRVVALVVGAGIVSAM
QVGKVPAALPELRAALDASLAQASWLLSAFAAIGAALGAGVGMAVDAWGARRMAVAGMLAQGVASLLGAMAGAIGWLLAL
RVAEGIGFLAVVVSAPSLIVAATGTAPARARALAAWSTFMPLGVAAAMLSAPALEYLGWSGMWRLYGLALLAYACWLAWG
TRGLPGMAAARRTTLARLRATLAAPGPRLYAMLFGLYTAAYFSIFGFLPSILAERLHVAPWAAGPLAALVVAACVGGNLG
GGALLARGVRRTRLMTAGFVLLALGTAVTMAPGVPGAAAYLACLAASALCGLVPTALLAGAPQHAPQPELAGATMGIIMQ
GNNTGLLVGPAVAGAIAGAWGWTWVAAWVGLLALAALGLIALLARTPREQTP
>SEQF1086_CAE43213.1 putative racemase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRVGRSGRHGAADCGTFLGERDMGPLQGTRVVELAGIGPAPMACMLLADLGAEVVRIERAESVELGVVRPARYNLLMRN
RCLVAADLKQPAMVEQALDLVARADVLVEGFRPGVAERLGLGPQACQARNPRLVYGRMTGWGQSGPLAQAAGHDLNYVAL
TGIIHAIGRAGQPPSIPLALTGDMAGGALYLALGVVAALLERSRSGLGQVIDAAIVDGAASLATVFYGLCAAGLWQDARG
TNILDSGAPFYDVYECADGAWISVGPIEARFYAQLLEKLELRAQDVGARDDRAAWPRAKMAIASRFRTRTRDAWCALLEG
SDVCFAPVLSFEEAPAHAHLKARGTFVEVDGVVQPAPAPRFGRTPPATPRPPSESPDSTLAAVLARWAAEDEARRG
>SEQF1086_CAE43214.1 putative LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDLRQLQQFVVLSETLNFHRAAERLHMAQPPLSTAIRKLEDELGIVLFDRKPRSLSLTVAGAAMLKHARRTLSNVDELQR
CAREYVSGDQGRIVVGFSNTASNAVLPRILHSFQARYPRVELVLHESTTHELVSELAAHTVDVALLRTPLFDACDAELID
LEQDHFILAVPADHPLAQQSCARLADLDGQRFIAFSREKVPAMHAIISLAFGEAGVTPKVVQQIVQVPTAIALAESGIGM
ALVPSAAARYLRTGARLLPVVDLPASLRIGIALGYDAQTASAATLRFVENTRAAHAAAPSPPA
>SEQF1086_CAE43215.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNSNRRRMLTAMAGMAGMTAFPFAHGSAGAWPERPIRLILPYAASGPTDVVARRIAARLAERLGQQFIVENKPGAGGNIA
SEFVAKSAADGYTALYHSSGIAIAPALYSKMGYDPARDLAAVAMPASIPAIIIAGPALPASVTTPAQFVQYLKDNPGKLS
YGSGGVGNITHLAVELMLQETGTQATHVPYKGTAPAMVDLIGGRVHFMLDALSTALPAIREGRARAIAVTSPQRAAVLPD
VPTLAETVIPKFAATTWHGVFVPASTPAAVVARLNAEINLVVQEPELARQFAEQAVELHASTPAAFSAFLGEEIARWGTA
ARDAGVQPA
>SEQF1086_CAE43216.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLLDTEVRIYWEDLELGTRFGTRKRTVTETDLVNFVNLTWLTEELFSNGEPADRAHMGITGRVVPGGLVYVFAEGLVAP
SFQAAGIAFLNAELDIKGPTFVGDTLHVECEVVQRRMTSRPGRGLVRTRNTVVNQHGEPVLAYTPLRMMRTRQIP
>SEQF1086_CAE43218.1 putative arsR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDADHADARLAAVAAAIADPARARMLCSLLDGCARTATELAALADIGASSASAHFAHLRAQGLVELAVQGKHRYYQLADA
DVAQALEALLVVAGVPRVPFKPATPGPLCHARTCYDHMAGTVAVRLHDAMLAQRWLQPDGRDYRVTPAGAAALTSLGLDL
GAIGRQRRRHAYPCLDWSARRPHLGGALGAALLQCCLQHGWVEQQLDSRALRVTAQGERRFDAWCRPRGRLADAA
>SEQF1086_CAE43219.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI
>SEQF1086_CAE43220.1 putative riboflavin-specific deaminase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTSTPTDDVSWIRRALALARSVMYSTAPNPRVGCVIVRDGQVLGEGATQPPGGPHAEVCALREAAARGASLAGATVYVT
LEPCSHFGRTPPCVDALVAAAPARVVVAMGDPNPRVNGQGLARLRAAGIAVTEDVCRDEALELNAGFAARMSRGLPWVWL
KLATSLDGRSALHNGVSQWITGEAARADGHHWRARSGVVLTGMGTVLKDDPQLNARAVQTSHPPRKAVIDGRFEIPEDAR
LFDDGAQVLIFTARSDAAKARRMADRNARVIELPGVRPDRVDLPAVMRWLASQEINEVHVEAGAGLSGALLAEDCVDELL
VYLAPVLLGDAAGMVRLPLLEHLDGARRFEFAELAPVGTDVRLRARVASRWRALQDSVSAASRQRG
>SEQF1086_CAE43221.1 hypothetical protein BP2949 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAVLARPRPGAQNSASATPKPLPRSLAMKQALIVIDVQESFRHRPFWDDSELPAFLAQVQALIDGCRQRDIPVLQVFHVN
AANDPASPFAPASGHVVALRELRIAPTAVFRKTVHSSLYARDEAGHTLHDWLLEHGVGEIIVCGIRTEQCCETTTRHASD
AGFKVRFALDATLTFAMRAASGKTYTPAEIRERTELVLQDRFAQVLPAAAALAA
>SEQF1086_CAE43223.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRCPFCGNADTQVVDSRVSEEGDTIRRRRRCLSCDKRFTTYERVELAMPSVVKRDGSRTEYDAGKVRGSLSLALRKRPVS
TDEVDSAVARIEETLLASGMREVPSEQIGELVMGELKRLDKVAYVRYASVYKSFEDIGEFVEAIREMQGPLLPGKKLRKD
>SEQF1086_CAE43224.1 serine hydroxymethyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFNRNLTLDQVDPDVWAAIQKEDVRQEQHIELIASENYASPAVMQAQGTQLTNKYAEGYPGKRYYGGCEYVDVVEQLAID
RLKQIFGAEAANVQPNSGSQANQGVYMAVLKPGDTVLGMSLAEGGHLTHGASVNASGKLYNFVPYGLDADEVLDYAQVER
LTKEHKPKLIVAGASAYALHIDFERMARIAHDNGALFMVDIAHYAGLVAGGAYPNPVPHADFVTSTTHKSLRGPRGGVIM
MKAEFEKAVNSAIFPGIQGGPLMHVIAAKAVAFKEALSPEFQDYAQQVVKNAKVLADTLVKRGLRIVSGRTESHVMLVDL
RPKGITGKEAEAVLGQAHITVNKNAIPNDPEKPFVTSGIRLGTPAMTTRGFKEAEAELTANLIADVLDNPRDEANIAAVR
ARVNELTARLPVYGN
>SEQF1086_CAE43225.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNLSSLSFSDNESIPERYAFGRIDAQSHVALADNFNPQFSWDDVPDGTQSFALICHDPDVPSQPDDVNQEGRTVPADLPR
VDFFHWVLVDLAADMREIQEGAFSDGITPRGKGGPLAPNNARQGVNDYTGWFAADRDMNGDYFGYDGPCPPWNDERVHHY
VFTLYALDVPSLNLQGSFTGLDALKAMQGHVLAQASLTGTYTLNPDLAPRQIGATTSS
>SEQF1086_CAE43226.1 tyrosyl-tRNA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSHPEAPITPEVEADLAIARRGCDELLVESEFARKLARSRATGVPLRIKLGLDPTAPDIHLGHTVVLNKMRQLQDLGHNV
IFLIGDFTSTIGDPSGRNSTRPPLTREQIETNAKTYYAQASLVLDPARTEIRYNSEWCDPLGARGMIQLASRYTVARMME
REDFTRRFKGGVPIAVHEFLYPLLQGYDSVALKADLELGGTDQKFNLLVGRELQKEYGQEQQCILTMPLLVGTDGVEKMS
KSKGNYIGISEAPESMFGKLMSISDTLMWRYYELLSFRSLADIAALKAEIDGGRNPRDAKVALAQEIVARFHSPQAAEAA
LAAFEARFRDGAIPEDMPEVTVGGAPQGILRILREAGLVASGSEAQRNVEQGGVRVNGDRVEDKSLQLSAGTYVVQVGKR
KFARVKLVG
>SEQF1086_CAE43227.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43228.1 hypothetical protein BP2956 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRGPNSLVRSFKRKVAALFAPPVEPTSRGGALLRRTLTVSALGLFAGAAALGMVQQPDRSELPPLRLIDSVLPLEAGQM
QVSDASNAPYISETRIRAGDTLAAVLQRLDIDSPRLQNFLTHDASARSIYKLYPGRSVQAATNENGDLVWLRYIHTPGNE
SGGQVVTRLLHVAPDGANGYKAEEVTQGTEQQTRVAVGTIRSSLFGATDAAGIPDSVTMQMADILSSKIDFLRDLRQGDQ
FRVVYEVRTHEGRYAGAGRVQALEFINGDKTYNAVWFSPDGKSGSYYDFDGTSLRGAFLRTALKFSRISSTFGMRMHPIH
KTWTGHKGVDYAAPTGTPIHATADGTVEFAGWQNGYGNVVIIKHHGKYSTLYAHQSRIASGLKKGQKIAQGELVGYVGST
GWATGPHLHYEFRVNNQPIDPLAVDLPVARKLEPAELRAFTQAVQPYKQQIKLLTEFQQTLPEGSATVASR
>SEQF1086_CAE43229.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDSTTHGPRTHVPGRLFIGLMSGTSMDGADGVLVRLDGPRPEVLASASLPMPAALRDELFALNHAGANELERAALAANGL
ARLYARAVRQLLDQAGLQPGDVAAIGAHGQTVRHRPDLGYTLQLNAPALLAELAGIDVVADFRSRDVAAGGQGAPLVPPF
HAALFAGGQARAVLNLGGIANVTLLEPGRPPRGFDTGPANVLLDAWCQRHTGQPYDADGRFAAQGQVLADLLEHLIASEP
WFALAPPKSTGRDLFNLDWLLARLQAFDGPAPQPQDVQATLQRLTARTVANAIDASAAAPRDVLVCGGGARNPGLMRELA
YCLQRPVRPTDDAGVPAQWVEALAFAWLAQACLDRIPAGLPTVTGARAARVLGALYPA
>SEQF1086_CAE43230.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAVTETVDLQAPPPVPLVFTDSAAAKVKDLLAEEGNPELKLRVFVQGGGCSGFQYGFTFDEVVNDDDTVLDKAGVQLLV
DPMSFQYLVGAEIDYKEDLEGAQFVIRNPNASTTCGCGSSFSV
>SEQF1086_CAE43231.1 putative integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPDDSASVQPRAPVARPQGRARAWLALAAGLVVGAVAGWRYGLAHQGPDDAVVLTRQQVAAQEAAMQQREAEARFLRAQL
DTADGEIAVERAARTELETQLQSAQSEVGRVRDQLAFYEQLLPPGPAGSVDIRGVAFEREGQGLRYKVLLMRSGRGETPF
SGALRFQATGTLKGETVTRDLEPLTVKAEGGGATVPEAGASLLALQFDQYQRSQGLLDLPDGFVPETVTVSVLEDTTVRA
TRTVKLEF
>SEQF1086_CAE43232.1 N-acetyl-gamma-glutamyl-phosphate reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAQASNSRIKVGIVGGTGYTGVELLRLLSQHPHVELTAITSRKEDGLPVADMYPNLRGRVKLAFSAPEKASLTDCDVVFF
ATPHGVAMAQAAELLAAGTRVIDLAADFRLQDTAVFERWYKIPHTCPDILADSVYGLVELNREAISKARVIGNPGCYPTT
VLLGLAPLIEGGKQLVDVQTLIADCKSGVSGAGRKAEVGSLFSEASDNFKAYGVAGHRHQPEIVAQLEKLAGGKVGLTFV
PHLVPMIRGMFSTLYARILPQARDTDFQALFEARYADEPFVDVMPAGSLPETRSVRASNNLRISVQRPGGGDQLVILVVQ
DNLVKGASGQAVQNMNLMFGLPESAGLDQVAILP
>SEQF1086_CAE43233.1 30s ribosomal protein S9 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIGNWNYGTGRRKTSVARVFIKKGSGKIVVNGKPVDEFFARETGRMIVHQPLELTGHLESFDIKVNVHGGGETGQAGAVR
HGITRALIDYDAALKPALSQAGFVTRDAREVERKKVGFRKARRRKQFSKR
>SEQF1086_CAE43234.1 50s ribosomal protein L13 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTFVAKPHEVKRDWFVIDAKGKVLGRVASEVAHRLRGKHKPEFTPHVDTGDYIVIINAADIVVTGNKAQDKKYFRHTTY
PGGIRETNFEKMQQRFPGRAIQKAVKGMLPKGPLGYAMIKKLKVYAGAEHPHTAQQPKPLEF
>SEQF1086_CAE43235.1 putative exported solute binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQRRSFLKHAGLGAVAGSAAVAAPVFAQDAPTLNWRMASSFPRSLDTLFGTGEIFVKFVSEATGGKFNIRQFPGGEIVPA
LQVMDAVSNNTIECGHTVSYYYYGKDPAYCFDSAVPFGLNARQMNAWMFDGDGMKLTREMFKPLKIVNFPMGNTGVQMGG
WYRKEIKSPEDLKGLKMRTAGFAGEVLSRMGVVPQQLAGGDVYPSLEKGTLDAVEFVGPYDDEKLGFNKVAKYYYYPGWW
EGGPQVSLYLNEGAWEGLPKSYQAIVEAASRVAHVAMTSRYDALNPPALRKLIAGGAELRAFPRSVMDASYEAALTVYKE
FSDKDPKFKAIYENYMGFRDSVVPWFRLAEGSYDQYLGVAMAGRK
>SEQF1086_CAE43236.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVNSSNSLPIAANHARFSELVEQVLAYARQAGASDAAAEVSESLGLSVSVRKNDIETVEQTRDRSLDLTVYAGQSRGSAS
TSDFSEQALRETVEAAWHIARHTAADPAAGLPDADLLATEFPDLGLHYPWPVTTEEAAELALRAERAARDVDARITNTDG
ASVASYEGQFVMGNTRGFLGGYPYSRHSLSVAPIAGRGNNMQRDYWYTSDRNPNRLAAPEVVGRYAAERTLSRLSARRLR
TGKFPVLFEAPLALGLLGAFTQAANGGALYRKATFLVDALGKPIFADHIDVSENPHIPGAMGSSPFDDEGVRTRARSVVS
AGVLEGYFLSSYTARKLGMATTGNAGGSHNLTLSSRLTRPGDDFEAMLRKLGTGLLVTELIGQGVNYVSGDYSRGAFGYW
VENGKIQHAVQEITIAGNLVDMFRHIVAVGSDAISRGTKTTGSILIEQMSVAGT
>SEQF1086_CAE43237.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTIAVQFAETVIIAKSVSTQFPMSSHSQEPVGEENFDDSEYDRPNKSQVKREMHALLDLGKELVELSPERLRQLPLEERL
YEAIREAQRTTGREGRRRQIHFVGKLMRSAPAEAIRAQLDTWRNGSREETAAMHRLEALRERLLTDDDALTAVLQRNPDA
DIQHLRALIRAARKEAAANAALSQGQEPQRKQYRALFQALKNLSA
>SEQF1086_CAE43238.1 probable carboxylesterase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAQTDLLDCIELETAPNPTHAVIWLHGLGADGNDFVPIVPELRLDGLAVRFVFPNAPVQPVTINGGMAMRSWYDILVTD
LVRREDAAGIRASEAAVRTLIARENERGIPASKIVLAGFSQGCAMTLHTGLRLDQQLAGMMGLSGYLPLLDSAAAERHPA
NAATPIFLAHGLYDPVVAPERADASRAHLQALGYDVRWHTYPMPHSVCLEEVADIGAFLREVLR
>SEQF1086_CAE43240.1 putative ABC transport proteins, ATP-binding component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAVVHNLMPAPAAAKIELREVSLSYFTPEGKTEALSKVSFSLAPGEFVSLIGQSGCGKSTLLSLIAGLIPPTSGAVLVD
GTPVTRPSPRIGYMLQQDYLFEWRTILDNVMLGAEIQGRRDARSEARAVHLLEKCGLGAFLEHTPRQLSGGMRQRAALAR
TLVTEPDVILLDEPFSALDSQTRLAISDEVVDILRRERKTVVLVTHDIGEAIAMTDRVIVLSRRPGRLKSQYCINFAEPR
PTPFQARSRPEFNTYFEQLWEELDVHVEG
>SEQF1086_CAE43241.1 putative ABC transport proteins, inner membrane component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAPAANTLALRPAHAPSEKYQEYLRRDRRRKHHVRLAQLMLLVLFLCAWEILPRMHVLNPLLTSYPSALWPTFFELWNH
GNLPRHIAATVMATLVGFGLSMLIGVAVAAALWWSDFLYKVIDPFLVVANAMPKIAFVPIFYLWLGSDYAVYGMAVAIAV
FVTIMVVYAGFRGVDPNKMKLAYTFGASRWQVLTKVILPGSVPTLIAAVKMNIGLALVGVIVGEFQSADLGLGFLIMNGS
QIFKLNIVMTAITLLALISSVMYLVIYRLEAAVARRYA
>SEQF1086_CAE43242.1 putative hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEFPQWVVDRVQARQGCLHPYDSLPGPRTAAVVIDMQRYFTLPGYQGECAAARAIVQPINRLCAAVRAAGGSVVWVQTAS
DHADSFWSHHHGVMLTPERSKRRLETLKRDSEGYALHPDMDARAEDVRVTKRFYSAMAPGSSELEPLLRGRGIDTLLIAG
TVTNVCCESTARDAMMRDFRTIMVDDALAAVTPAEHENALHGWMLFFGDVLSVDEASARLAAADETRRIA
>SEQF1086_CAE43243.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRIRLNSIFVDDQDKALRFYTDVLGFTKKHDIPAGAARWITVVSPEGPDDLELVLEPNGHPAASAYQAALRQDGIPVTAF
ESADIHAEARRLKDRGVAFTIDPTPAGPATIAIFSDTCGNLIQLYQVER
>SEQF1086_CAE43244.1 probable ATP-dependent RNA helicase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTNTSFSSLPLLPALLDNLQGLGFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQNLDVNRLAPQALVLCP
TRELADQVAQELRRLARLIPNVKVLTLCGGAAARPQAESLARGTHLVVGTPGRIQDHLARGSLDLSTLNTLVLDEADRMV
DMGFYDDIAAIASHCPARRQTLLFSATYPDNIRKLSARFLRNPAEIKVEAQHDASRIEQLFFEIDEGQRLDAVATLLAHF
RPASTLAFCNTKIRSHDLVERLRAQGISAQALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAVINVDVT
KDTEVHVHRIGRSGRGDQKGLALSLCSPEEMRWANLIEQYQGAPLKWADLGSLRPKSDRPLRAPMITLCIQGGKKDKLRP
GDLLGALTGDGGLAFEQVGKINITEFNAYVALDRQVAKQAFARLSNSNIKGRRFRMRFLEEF
>SEQF1086_CAE43245.1 putative integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGQQVVITAAHWMYLLGVVVIVITMIFRANVVVPSLLGTLLVGIAFGGSIVSGVTAVFNASFMAAKELFNIFLVIAFMTA
LLNALKTLGSDVRMVQPFRAVMTNGHIAFVVLALATYLISLFFWPTPAVPLVAAILLPVAIAAGLPPLGAACAIAIAGQG
MALSSDYVIGVAPGISAKAAGVATALVAERTLILSLVTGIVALVLAYVGMRRQIQAPSEALLDAWQRRAVVVPESVEESG
TMDKGELAAAVDYDSGSVPLGKQGWSRLFAIVTPVVFLLVVLVMVAPRLFPSLPALRGGEAAALVGGAAALLMVAATAVG
VPGRDFLNTAADHVTDGFVFAFKAMGSVLPIAGFFFLGAPDQAAGILGVEPGHAPNLLFDLLQAAQGWIPNSHLVVAFGV
LIVGVITGIDGSGFSGLPLTGALSGALGATVGVDAATLAAVGQMGAIWTGGGTLVAWSSLIAVAGFARVPVLELVRKLFG
PVVLGLIVSTVAAVMFMT
>SEQF1086_CAE43246.1 putative GntR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLGSQHSPLFALVQETLRKRILSGAYAQGERLVEGDLAEEMGVSRIPVREALRALAAAGLVRIEPRRGASVASLSPEHA
RDIVEVRATLEALNARLAAQPRNPQQVVDMDRAIRDGAHACEHGDTAALVEQNRQFHELLGGVSTNAVLQDLMRSLRDRT
ALLFARNSVTRAADILDEHAGILQAVTAGDADLASLLAARHVHNAAQWYFERPVDRKAVAADTD
>SEQF1086_CAE43247.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43248.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLRHVLAPMFEPASLVVIADRLLPVTSVLPSALRARTTVVQAAPGAAPELPAACAGVAEGLRPDLALVCVAPGVLPETLR
RLAALAPRAVILLPHELPDPYPRGTQALCRAWAAENRCELLGPRSFGAQRPHAGLNLSQHPSLARAGRVALVAQSRSIMA
AVMDWAEDVHIGFSIAVSLGDEAVVGLSQVLDYLASDSRTDSIVLYIEDVGPAREFMSALRAAASVKPVIVLKAGRADAN
GADAVFDAALRRAGAVRVRYFVQLFSAVKVLGYTRRPRGRRVALFSNGSGPPQLALDLIGPDAAVLQAKLSPATQRTLAD
MLEPDAATANPVITYTPLTPERIQAILDCLLDDAGVDGVLVLLAPDALADMPAVARQLAQLAPRARKPVVSCFMGDAGMR
PLRRMLDDAGTSAFRTPESAADAFGVLATHHYNQQLLLQTQPPEPPGLLPDSAGARDIMGQARAQGRRELDPIEARALLD
AFYVPLREGPLGVRPIEAESRPMAIRVRRDPHFGPVIRFGAGGPDAVLSGADRGMDLPPLNGFLARQMIERSRLWRRVLA
PQVTNAAAEALQHALVQVSEMVSELPDIESVDIDPLYAGETQLRAGGLRIVLCEREATVSPQLSGYAHMAIHPYPARLVQ
ARRFDDGTPWVIRPIRPEDGEPLQEFIRGLSERSRYMRFVSMMRELTPRMVARYTQVDYHRELALVAATQVPNPANRGHP
REVIIGFAHYLRNPDGRGAEYALVIGDDWQRRKLGGQLMSALIDAAREQGLEYIDGLVLSTNRPMLTLMTRLGFTNDADP
EDPTMRRVWLQLREPDAPA
>SEQF1086_CAE43249.1 glutamyl-tRNA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRTRFAPSPTGFLHLGGARTALFSWAFARHHQGVFVLRIEDTDVERSTPEAVQAILDSMDWLGMQPDEGPFYQMKRMDRY
AEVLAGMLEAGTAYHCYCSPEEVDAMREAARAKGLKPRYDGTWRPEPGKTLPPVPADRKPVIRFRNPIDGATSWNDMVKG
PISFDNGELDDLIIARPDGTPTYNFCVVVDDWDMGITHVLRGDDHVNNTPRQINILRALGATLPEYGHVPMILGPDGEKL
SKRHGAVNVMEYDAQGYLPEAMVNYLARLGWSHGDDELFTREQLVEWFDTRHLSKSASQWDPKKLNWVNAHYIKGMDDAE
LAGRVAPRVERRGGKPQAADLPAIMGLLKDRAETLEQLAEDAMLFCGEYQPAPAELAAQHLTETARAALADFAARARDTE
WNRAAISALIKAVLADRGLKMPQLGIPLRVAVTGRAQTPAVDAVLELLGKETVLARLQAL
>SEQF1086_CAE43250.1 putative membrane transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLSSESRAILLLALAAFASSTAFRICDPMLPQLAADFATTTGQAAYAVTAFAIAYGVLQMFFGPLGDRYGKYRVVCIAT
FACALGSAAAVLAGSLDALVAARALSGAAGAGVVPLSMAWIGDNVPYERRQATLARFLTGTILGMAAGLFADTVGWRWAF
AVLVVIYLVVGTLLYRELRRQAASGQTGAAGAARTGFVAQARLVLGTPWARVVLATVFFEGLLVFGTLAFAPSYLHARFG
ISLTAAGALVASYALGGLLYTLVAGHVLRRLGERGLALAGGLVLSAAFLCYWLGPQWLWSLPAGVLAGFGYYLLHATLQT
NATQMVPAARGTAVAWFASCLFMGQAAGVALAGLVVDAAGAAMLFGMTALLLPLLGCGFAWALRRHAAAQTAQAA
>SEQF1086_CAE43251.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFVLRGSEEVMSRVSISLVGALGVALMLGGCAARKESAATAPRATPEAPEAVACTPAQAGDPMVGTWYSVSRQRGFAGDF
QALTVLSADGTMRYETQLKVGRKTRPALRETGCWHVADGIYTMQTMQSNGEPVDASDPIYQNRYRVEKVDSGKLTLRELK
RNGQAVTARRMQPGYRLPY
>SEQF1086_CAE43252.1 putative AsnC-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDKTDIGILKALQEDGRASAQQLSETVGLSAAPVWRRVKALEANKVITGYSAQVDRSKVGLQGCMFAQISLERHSAGTVE
TFERSVRDAPEILECYAVTGDSDFLLKILVESPEAYDRFLHRFLFNLPGIRQTRTIVVLRELKHEVRLPL
>SEQF1086_CAE43254.1 ribonucleoside-diphosphate reductase alpha chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQTTIASVTRPTAVPPAQSETSTDPNSGQWASYNIIRRNGSVVGFEPSKIAIAMTKAFLAVNGGQGAASARVRELVEQLT
AQAVSALVRNRPAGGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRAQERAAAAEVLEKSSPAAAQEPTLSVVDNGV
RRPLDLAALRATIEAAGEGLTQYTDTEAILKETVKNLYDGVPVDEVFKSAILAARALVEKDPAYSQVTARLLLHTIRKEV
LGEEVSQADMATRYAEYFPAFIQRGIEGGLLDAKLAEYDLERVAKALDGRRDLQFGYLGLQTLYDRYFLHVRGTRIELPQ
VFFMRVAMGLALREADREARAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAG
GLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHD
MNTANWIPDLFMKRVMENGEWTLFSPSDCPDLHDKYGKAFEQAYAGYEAKVASGELKLFKKMPAVSLWRKMLSMLFETGH
PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNATEIAVCNLGSVNLVAHMKPNANGGYELNHDKLKRTIGVAMRMLD
NVIDINYYAVDKARNSNERHRPVGMGIMGFQDCLHVMRVPYASQDAIDFADRSMEAVCYHAYWASSELAQERGRYQSYEG
SLWSRGILPQDTLAMLREERGGNVDVDDSSSLDWDTLRSRIKEHGMRNSNCIAIAPTATISNIIGASACIEPTFQNLYVK
SNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRKLYATAFEVEPSWLVECASRRQKWIDQAQS
LNIYMSGASGKKLDDTYKLAWQRGLKTTYYLRTLGATSAEKSTGRGGELNAVSAGDHGAGSAVSAAPVLPEPEIVGAVCT
MRPGDPGFEECEACQ
>SEQF1086_CAE43255.1 ribonucleoside-diphosphate reductase beta chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLNWEEENIATKPATSPAPAGGREAAPAVRAATGVFGDAALPTPTAPQHAASLGASDATAGRVKVADKRIINGETDVNQL
VPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECR
QFLLRQAFEEAIHTHAYQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFHTGTPEADQKLLKSLIVFAC
LMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKLENPHLWTPEFREEIRELFRKAVELEYA
YAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLFPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE
>SEQF1086_CAE43256.1 histone protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATAKKAAKKAVKKPAAKKAAAKKATPAKKAAVKKVAVKKVAAKKPAVKKVAAKKPAAKKVAKKAVAKKAVAKKAVAKKA
VAKKAVAKKAVAKKAVAKKAPAKKAVAKKAVAKKAVAKKAVAKKAVAKKAVAKKAPAKKAAPKKPATPPSTAAAPGAKTA
LNPAASWPFPTGGRP
>SEQF1086_CAE43257.1 putative integral membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATALMLGDIIRFLLEITFTLFGAALILRAWIHAVRLHPFNPLARAIYQGTNWLVLPLRRVIPATGSIDWTSLIATWVAA
LIYLILVWLSAVGALPPASALPSAMGSALLMVLKWTLNLMVWMTLIQAVLSWVNPLSPLMPLLQTLTAPLLDPIRRILPR
TAIDFSPLVLLIGAQILLMMVARLAYGIFGV
>SEQF1086_CAE43258.1 putative D-alanine-D-alanyl carrier protein ligase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRGMYFDLRSFEFVSDARGGQADAVVGSDRVLTWQALREEAGQWAARARAHGIGPDVPVVIHGHKEAAFFVAMAGALLAG
APFVPVDTIYPPERVRRIVEIVRAAAVYDTQADVFRPGAAEPAALAERGLAYVMFTSGSTGDPKGVQIGRESVALLGDWL
RDGLALGEAPVFMNQAPFSFDLSMYEVFGTLAAGGTCVLNAREQIAAPQQWLGRLAGSGVTVWVSTPSFAHQQLVNRDFS
PQQLRALRTFLFCGEPLPVALARKLRQRFPEAAILNTYGPTEATVATTALVVDDAVLAEHDPLPVGYAKPASLLYVADDE
ICIVGDYVMRGYLNRPDLNQAKLFVHHDGRRGFRTGDLGRMREDGLLFCRGRMDDQIKLNGYRIELAEIDAALHALPGVA
GGACAVLRRPDGTAVRVIGFVAQRTMEQASFQLPAALQQWKAQLTGRLPSYMVPSELVACPDLPVSNNHKIDRKKLLEIY
AAIPAAA
>SEQF1086_CAE43259.1 putative protein involved in the transfer of D-alanine into teichoic acids [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MELFGSFAFFGGALFGGLGLLLYRTLGLPWRLGYRHLIGALCLAVWLAVFWTRPYQPLGLLAVASAALWAMRRGHLPTWA
AVLLTMALLLLLKCGITTMTGMLGLSFATFRAVDVLLFAPRNERISPLDYCNYLFFPLTLLAGPMYRWRNFQADLKRGYE
GVTLETWLAGLELLIFGVIQKFGVAEAIWRYGLNTLDAHDYSLTGVALNASLYSFYLFFDFAGYSSMAIGVGMLFGFTLP
VNFRNPLASANPQDFWRRWHISLSEWLRDVVFMPIYKALSKTAFFGRHRLAAQNIGILATLLAMGVWNGLALHYVVSGLM
FGAYSVGHNLLVQHARTRPALQAFLARRPVQWAGRALTLILAALALYVFSGRSPI
>SEQF1086_CAE43260.1 hypothetical protein BP2989 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRFFWHLCLYLGLILVFVLQAQPTTGSGGPIKVEFQYQQF
>SEQF1086_CAE43261.1 putative protein involved in the transfer of D-alanine into teichoic acids [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MASAVALSLGLYWGADGALSALVHPHSSVASVRDNYLPNLGPDWGTQNVNLNRLGNALADGTLVVLGSSELSSHDLRFVP
YRFFPQELKVPTLAYGHAMFQSYGIVSVLEAVADSLTPNTRLVIMVSPAWFASGGQLPRSAFAEHVTGPVWDRLWDKPAT
REQMQDWIADNANWGLLWLIANGQVAELKDKIALWWNSRGERAPDRPRSPLAVPAHKYVSWPAAARLDAGRWHDLLGQAR
GIEAELGGHNPYDVRDDYYRQYLAPLNSPARNEFPEMPPMTRPELGDLARVMALLQQRKVRAYFVIQPFNPKLILDVERF
DPVADAIKGMCARYGMGCLDMYSVPFQPGMVRDDMHLAELGWAIADQGIAEFFSR
>SEQF1086_CAE43262.1 acyl carrier protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHTEQELHTRIADIVESIILKKVTPDTALISSGLVDSLAAVDITLAVESEYGCSIPAPEIAEHLQSVRTLAGYVAANSQ
>SEQF1086_CAE43263.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNYMHSPSVVAGRARRLLAVAAVAGSVAVLAGCANPSASSGVYTYGQAQREQIVRTGTVTGVRPITIQNDKSSGVGLVAG
GALGGVAGNAVGGGTGRTIATVGGVILGALAGNAIENRAGKSSGYEITVRLDNGETRVVAQEADVPISVGQRVQVISGAG
PTRVTPY
>SEQF1086_CAE43264.1 putative carbohydrate kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAPVLVCGSMAFDTIAVFEGRFKEHILAERIQSLSVSFLVPAMRKEYGGCAGNIAYNLKLLGGQPVPVATVGEDAGEYL
ARLSGLGIDVSRIQVVPGTFTAQCFITTDLEDNQIAAFHPGAMEFSSGNDLSDAQAAWAIIAPDSKAGMFAHAERLHARG
IPFIFDLGQAMPLFDGADLERMLKLAQALTVNDYEAGVVEQRTGRSLAEIANGLRAAVVTRGAHGATVMAGGQTIEVAPV
QAQAVVDPTGCGDAHRAGLLYGLTSGWGWADSCRLGNLMGAIKIASRGPQNHAPSRGEIDALMRANYGIGLPD
>SEQF1086_CAE43265.1 possible membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALTTRCPQCGAAFRVVADQLRVRNGLVRCGECATVFDGRACLVPAPDAGAPRAAAPPVLSAPPSDPPYAQPAAPAPAAP
ATQAPPAVLRGRADMQRGDGPPADEDEPDAMAEGAPEDEADWDAAPRPESAEAGWRPILPRDPAHDDREPAFRIGRTATA
CAAADAEDAVQVPGEVRTRYSNAVDSGRTPPEFLDDDRIQARQLVRRLWAYACVLGVLALAAQLVYVYRGAIAGAAPALR
PVLEQACVPLQCSVGHARRIERISITSSSLRPAAGAAQGDDARTRLTLNVVLRNRYDRPQEWPALVLDLTDISDTVVARK
IILPQDYLPSQAGPAFAAGGEINLAIPVEVAGLQVNGYQLDKFFP
>SEQF1086_CAE43267.1 biotin carboxylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFEKILIANRGEIALRIQRACRELGIKTVVVHSEADRTAKYVRLADESVCIGPAPSRESYLNMPALISAAEVTDAEAIHP
GYGFLAENADFAERVEKSGFVFIGPRPETIRQMGDKVSAKRAMIEAGVPVVPGSEGALPDDPQEILRIAREVGYPVIIKA
SGGGGGRGMRVVYTEAALLNAVNMTRSEAGAAFNNPEVYLEKFLENPRHVEIQVLADGGRNAVWLGERDCSMQRRHQKVI
EEAPAPGIPRRLIERIGDRCADACRKMGYRGAGTFEFLYENGEFYFIEMNTRIQVEHPVTELITGVDVVQQQILIAAGEK
FTLRQRDIQFKGHALECRINAEDPFRFVPSPGRITNWHVPGGPGVRIDSHAFNGYFVPPNYDSMIAKVITYGDTREQALA
RMRIALSEMVVEGISTNIPLHRELLQDARFIEGGTSIHYLEHKLAQRP
>SEQF1086_CAE43268.1 biotin carboxyl carrier protein of acetyl-CoA carboxylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDLRKLKTLIDLVAESGIAELEITEGEGKVRIVKFSQALQPVAYHMPEAVAPAAAPAAAAAPAAEAAPAAPQGHVVKAPM
VGTFYRAPNPGAAPFVDVGQSVKEGDPLCIIEAMKLLNEIEADKAGVIKEILVENGEPVEYGQPLFIIG
>SEQF1086_CAE43269.1 3-dehydroquinate dehydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAQRILVLHGPNLNLLGTREPHIYGSLTLAQIDQGLAALAGQLGVALTSWQSNHEGALVERIQAAAADGTDFIIINAAAY
THTSVAIRDALAAVAIPFIEVHLSNLYKRDSFRQHSYLSDLAIGLITGLGADGYEAALRYAARH
>SEQF1086_CAE43270.1 thioredoxin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHCYDRAMNRRLFLYAGVAAAAAASGGYFLAERRNARPAPSVAAPAEGAGDPLAQLRQLALPDLHGTPRKLADWGGQPLV
VNFWATWCAPCVKEMPELDALQKKYPQVRFVGIGVDTTDNMRKFVEKIPVSYPLLVMGAGAIDTLRSLGNPSGGLPFTLL
LSADGSMKRKILGQIVYDDLDRSVAGLSA
>SEQF1086_CAE43271.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHLHILGICGTFMGGLALIARSAGHKVTGCDAGVYPPMSTQLAEQGIELIEGFGADQLALAPDLFVIGNVVSRGNPLMEA
ILDSGARYISGPQWLGEHILPGAHVLAVAGTHGKTTTSSMLAWILQCAQRQPNFLIGGVAPDLQVSARYAPGARPFVIEA
DEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIETQFHHLVRTVPSNGQLVLPTDAPALERVLERGCWTPVA
RFGPGGQWQAGPADEQGAFEVSVDGRDAGTVRWTLGGEHNRRNALAALAAARHAGVAPAEGIEALSRFGGVKRRMELRGT
VNGIRVYDDFAHHPTAIATTIEGLRRQVGAARILAVLEPRSNTMKLGTMAARLPEALAGADLVFCFGDHAGKHALGWDPA
RVLAPLGERAAGYDDLPALVRAVAAAARPGDHVLVMSNGGFGGVHGKLLDALAQPR
>SEQF1086_CAE43272.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPILYLHGFRSSPDSFKARLLAQAMHQRGLAGQWQCPQLPASPQQAAELALALAREQLAGQQDPRRLTVIGSSLGGYYAT
WLAERLGCQAVLLNPAVQAARDLATQVGEHRMYHSDAPFHFLPEYVEELRALYADPLTHPERYFLVAATGDEVLDWREMR
DRYPGCRQRIVQGGDHGLSDFPRWMPEVLEFALGSPH
>SEQF1086_CAE43273.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYVFYDDDGGFKAGNILSETDASLQVESETGKRSKIKRASTLFTFAAPEPAALMAQAATLAEDIDLQFLWECAPQEEFDA
PALAAEYFGHAPGPVEQAALLMRLHGAPAYFHRRGKGRYRPAPPDILAAALAALEKKRLQAEQQQQWIDEMAQGRLPEAI
AQAAESLLVRPDKNSMQWKAFDAACTQLQKTPERLLLDLGAWPHPLALHKRRFLAVNFPRGVGFPAMDVPSIERELPLAE
GEIYSVDDITTTEIDDALSVSALPDGKIRVGIHVAAPGLAITRGSEHDKLARTRLSTVYMPGEKIPMQPDNVIQAFSLDA
GRPVPTVSLYVTADPRTGAIEASETRLERIVVRENLRHNDLDAQISEAALADPDAPLAYGHWLRPLWQLAQALGAQREAV
RGKPENNTRVEYSFYLDGSPDDPDTPVRLVPRQRNAPLDRMVAEYMILANNIWGGLLNQHGVPGIYRSQQAGRVRMSTQA
LPHEAIGVPQYAWSTSPLRRYVDLVNQWQLIAAVEHGVSARLVAPFKPRDADLYAIIGAFDAQYAAWADFQNAMERYWCM
RWLKQQGISRTTAHVLREDLVRLANAPLVTRVGGLPELERGAAVQIDIMNMDELALELDCRYLGPAD
>SEQF1086_CAE43274.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRSASSSSILTRFWRWLGAPAQHYLLVGTAISLLVHAGALAWRFAGPAPARPQASTLEIVLVNARTDSAPVTAQVLAQS
QVDGGGNAARGLAATPLPQTGRNAETIVLEAMRKRQAQLEAEQDRLLTQLQSQARTGQERQPVHPWPDASEPGLDPREQP
GVIQNAQIATLANRVQAYNAQPRKEFVAPAAQASRHAAYLDAWRTRIETIGTRHYPEDARGRIYGSLRITVTVRADGSLA
DFEIDQPSPHAVLNQAARRIVQMAAPFPPFPPEMARDTDVLVITRTWHFVNDSLETTAP
>SEQF1086_CAE43275.1 shikimate 5-dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLPASPPRYAVIGNPIAHSRSPQIHAMFSAQTGRPLRYERLLAPVDGFLPTVQAFRESGGLGLNVTVPFKLEAYALAEA
RLSERARLAGAVNTLSWRDGAWHGCNTDGVGLVNDLLRLGVALAGARVLLVGAGGAARGVLQPLAAAGCARIHIVNRTAA
RAAELAAAWRAAAPRTGTQVSAGALAQAAEPGGWDVAINATASGLQGAAPDLPGGLYAPDALAYDMMYGARPTAFMRQAE
ADGAARCADGLGMLVGQAAESFHIWHGVRPDPGPVLLALRTELLAAG
>SEQF1086_CAE43276.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43277.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQYFRSLAFFLLPVPATAMACDGWPSWARGACQRVDQIWNEGGNDLYLTGYSWHNRAMYSSDKIRSFNELAWGGGLGKS
IYDEDGDWQGLYAMAFLDSHSDIEPIAGYGFQKIGRIGADTRLGIGYTVFLTSRSDIMSRVPFPGILPLVSAGYRDATLY
ATYIPGGKGNGNVLFMFGRWEF
>SEQF1086_CAE43278.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVLVMSLRESAAAADAGAGPLAGSARDLLAQWNGGEDVWVFAYGSLIWRPDFAWQERRLATVRGYHRSLCLWSHDHRGSP
DNPGLVFGLDRGGCCRGVAFRVAGRDVPEVFQALWHREMSGGAYKPRWLRCHTGQAPVRGLAFVPDRRCRHYAGALSDEL
LIRAVRQAVGRSGACLDYVRETHRALNEHGIVDWRLGALVDRLAQP
>SEQF1086_CAE43279.1 glutamate uptake regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGVPVDQTDIKILRLLQKDATCSVAEIAEQVNLSVTPCWRRIQKLKDDGVIARNAVLLDPKALGLNLTVFVSIKTNQHNA
KWTDNLINAVMSLPNVVEFYRMAGDIDYLLKVVVEDMAAYDRFYRRLIEAVDLLDVSASFSMEVIKSTTELPLDAV
>SEQF1086_CAE43280.1 putative D-amino acid dehydrogenase small subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMRVLVLGAGVAGMTAAYYLWRDGHAVTVVERQAGPARETSFGNAGGLCPSFAGPWAAPGMVAKVLRMALQRNAPIRFSL
APRPRKLAWLARWLGECSAERFRVNKLRMQRVAHYSQACLREIAAAGLPISFDFHQDGTLQLFRGEADLKAVPNITRALD
EFEVPWQFLSGAEAAAREPALAGAGAPVAGGLFLPLDGSGDCYKFVCGIGAWLAGQGVAFRYGCTVASLAQAGGAIAGVH
TDQGLLQADAYVIALGGSTPFLLRPLGLKLPIYPVKGYSITAPIADEARAPRAAIMDEYNKVMISRLGPRLRAAGMAELK
GYGLAIDPGRVAFLKRVVREWFPQGADYDAAQAWAGLRPMTPDGPAILGPTRYANLYLNCGHGSNGWTQACGTGRIVADI
VAGRTPQIDLDGLTADRYT
>SEQF1086_CAE43281.1 putative oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDLGIAGRTALVFGGSRGMGRACARQLALEGVKVTLAARTAQTLEQAAAQITREAGIGVGWVAADLTRAEGREAALAACP
APDILINNADGPLPGDFRDWSRDDWISALDAMMLGPIDMIRRVVDGMTQRGFGRIVNIVSRSVKAPHAELGLSNGARSGL
IGFVAGLARQTVRHNVTINNLLPGAFATDAQVRHIQGLVEQSGQPFEKLWEERGRANPAGRYGQPEELGALCAYICSMHT
GYMTDQNILIDGGGLSRHLLTRTRGAGAAA
>SEQF1086_CAE43282.1 hypothetical protein BP3011 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MANPFRNVAPRIGRLSAFVHPMRTPPLVSVPISPSLQNLCASVQSAQLNAAQALLRELAASVAGANGALADLPPELRAGH
PDHYSRHVAYADPHGSFTIAYLIWRPGQFSPVHGHKTWCTYRVLQGELTESHYRWDPELGLALRTGAVARRPGDIVTATP
GLAQIHRLGNAGDEVAISLHIYGVAQSDIATGVNHVVQEAAPRPH
>SEQF1086_CAE43283.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRDPWMAGRPFSLTLWGRKSMKPRILKGFAASLCALALLGAGVAYAPAHADERPLVLVVPYPPGGSTDILARIMQPRLSK
ELGGRAVVVENKVGAASQIATAYVARAEPDGNTLLVSFDNHAINPAVKPKLPYDTFKDFVAISQTVRFPLVVGANPSVPG
KTLAEFLDAARKRPANTFNYASTGVGSLNHLVPEELKRRAKVELLHVPYGGAGPAVQAVVGGQANMTWLSYAALRGQIQA
GKIKPLAVAGDKRLSDLPEVPTVIESGFPGFVAYSWSGMFAPAGTPADTVRKLTAAFQTVLADPEVSRKLNEAGFEIVAS
DGPALEQYVRSEYERWDSFIKANNISLEN
>SEQF1086_CAE43284.1 hypothetical protein BP3013 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLHAVGRTEFDHAVVMVRDRLDALAPHFERQGFHLSEKAVHNLGSCNRLIVLEGTYVELLGWPPGAPPARKEIADSPLGL
EALVFRTYDAEATYRRLLEAGFAVNPVQELTRAAQWQGREVQARFHTVRFAEQPIPGIRMYFCRHLTPELVWNDELLSHP
NGARGIVSIEADAADAQAVAQRLAAVVDVPAEAVAGGWDVPLGNLRLRVRQDPACATPRLRTLTLENRDGAHYTLDTGV
>SEQF1086_CAE43285.1 preprotein translocase secA subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVSLLKKLIGSRNDRLLKEYRKQVAQINSLEPKISALSDEELSAKTQEFRDRHQQGTSLDDLLPEAFAVVREAGKRVFGM
RHFDVQMLGGIALHNGKIAEMRTGEGKTLMATLPVYLNAIAGKGVHVVTVNDYLARRDAEWMGRLYRFLGMSTGVVVPQQ
PNDEKIAAYAADITYGTNNEFGFDYLRDNMEYRVEDRRQRRLFYAIVDEVDSILIDEARTPLIISGQAEDHTELYVRMNA
VPPLLKRMASEPKPHEPEPEGDYWVDEKSQQVYMSEAGHESAEKILTRVGLLPEGESLYDPRHIALMHHMMVALRAHTLF
FRDQQYVVQDDEVVIVDEFTGRLMVGRRWSDGLHQAVEAKEGVKIQHENQTLASITFQNYFRMYDKLSGMTGTADTEAYE
FQEIYTLETVIIPTNKPMVRKDQNDQVFKTTQEKYQAILNDIRDCHERGQPVLVGTTSIENSELLAGLLRQAKLPHEVLN
AKQHAREAEIVAEAGKPGHITIATNMAGRGTDIVLGGSVDKQVDLIHANEALSEAEKEARIETLRAEWKPLNERVKQAGG
LRIIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDPLMRIFAGDRVRAIMERLKLPEGEPIEAGMVTRSIETAQRK
VEGRNFDIRKQLLEYDDVANDQRKVLYSQRNEVLEAASIGATVEGLRDAAVAEMFRGFIPEESVEEQWDVAGLEKALAGD
WHIQLPLTDMLEQEPNLTDEELLERVVAAARQIYTAKVEQVGAESWAQFERSIMLQSIDTHWREHLSALDYLRQGIHLRG
YAQKNPKQEYKREAFELFSGMLDRIRDDVVRVLMTVRVQSAEQVEQAEADAAQPHVQNVQYHHSDYDEALADDGQPQGAQ
PVRNVLPKVGRNEPCPCGSGKKYKHCHGQLA
>SEQF1086_CAE43286.1 putative peptidase family M23/M37 protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLVGATLLTAAIVGAAVQRYMSPSAPAAYAVDWPAYAQAVSPDRDTAFVRENVTMLATKVGTLQAKLASIDGLGRRVAQV
AGVAYTDPELATQLQGMPEEATHVMDDLFTDRQPPSPATAADLAQQLDEIQVRMAQQADNLRLLDAALTRRSADKALLPS
AMPITEYPYLSSSYGWRRNPVTGRYAMHEGLDFSAPSGTPILAASGGVVLVAKYQSGYGNSVEIDHGNGLITRYAHASRL
LVKPGDVVERGQEIARVGSSGRSTGPHLHFEVRLAGQPLDPRLFLGPQQTAPPTVAQAPATAPAASATR
>SEQF1086_CAE43287.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRGAGVLATARKHLQIQHAVAAVLPPALGALCVVAKLENQHLQLAVPGPAHAAKLRQMAPRIAQTLTGQGWNVNEISVRV
QAGMPRPGQKAPRPPKLAQPLGSTALDAFETLHRGLRPGPLADAVARLLKHHKNR
>SEQF1086_CAE43288.1 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFRQRSIQNLVRTIGVGVHSGRRVELTLRPAEANTGIVFHRVDLPQVVDLPASAIGVGDTRMASVLQQGNVRVSTVEHLM
SALAGLGIDNLHVDLTAEEVPIMDGSAATFVYLLRSAGIVEQNAPKRFIRVLKPIEVREGEGRNEKWARLEPHEGFALAF
SIDFRHPAIDSTANFAEIDFATHSYVREIARARTFGFVNEVEALRSMGLARGGSLDNAIVMDEFRVLNSDGLRYDDEFVK
HKILDAIGDLYLLGKPLVARYVAYKSGHALNNQLARALLEQQDAWELVTYESQAEAPQAFRHEWKLA
>SEQF1086_CAE43289.1 cell division protein FtsZ [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMNFEMLENNAKGTVIKVVGVGGAGGNAVAHMIRSGVSGVDFICANTDAQALAATNAPVQIRLGRTGLGAGAKPEQGRAS
AETAREEIRAALNGAHMVFITAGMGGGTGTGAGPVVAEVAKELGILTVGVVTKPFTFEGNKRLRMAEDGIGELGKHVHSL
IVVLNENLYELMDDDATQEDCFKAADDILHNACAGIAEIINVEGNVNVDFEDVKTIMGEQGQAMMGTAAASGADRARVAA
EKAIACPLLEGVDLNGARGVLVNITASRTLKMRETREIMETIRSYASDDATVIFGTAYDEQMGEELRVTVVATGLGREAV
RPQLVQHTSEALRTGTDNMPVGNMLAGQQGDYRGLDMPSVMRNPRSQASAQVRALESSGMDHFDIPAFLRKQAD
>SEQF1086_CAE43290.1 cell division protein FtsA [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRDIKDLIVALDIGTSKVVAVVAEILPEGRFEVLGLGQHESRGMRKGVVVNIETTVNSIQRALEEAELMADCKIRDVYA
GIAGSHIRSFNSSGMVAVKDKEVTATDVARVIETAKAVNIPTDQQVLHVLTQEFIVDGQEDIREPIGMSGLRLEVRVHIV
TGAVSAAQNIVKCVRRCGLEVQDLILQPLASSLACLTADEKELGVVLVDIGGGTTDVAIFTGGAIRHTAVIPIAGDQITN
DIAAMLRTPTPDAEEIKLRYGVAKQVLARPDEAVEVPGLGDRGPRQVKRQALGAVIEPRVEELFTLIQQVVRDSGYEDLL
ASGVVLTGGSAQMPGMIELAEDVFLKPVRVAVPEYEGSLADVMRNPRFSTVMGLLQEARMQRLRGRKVAAQTGNFKTLLA
RMKEWFMN
>SEQF1086_CAE43291.1 putative cell division protein FtsQ [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MWNDARTINLIANTLAVLAVAAMLLAGVAWVAQRPYFTLAAIEIESMPETEMHYVSTGAVRAAIAGRFGGNFFTVDLDEA
REAFESVPWVRHATVRRIWPNTLRVRVEEQQPLALWNENQMINTWGEAFTANTGELADDMVLPHFTGPEGTESLVVQRYA
ELARWFAPLDMHVRELVLNPRYAWAVTLSNGMKLDLGRDPGADAPDPHGLPGALPFAARIQRFVQAWPVVSSRLEGRTVT
QADLRYPTGFALALAPLPPEHASHSKSKPAKKR
>SEQF1086_CAE43292.1 D-alanine--D-alanine ligase B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKQFGKVGVLYGGRSAEREVSLMSGKGVHEALLSAGVDAHLFDTGERSLADLAAAGFERVFIALHGRYGEDGTLQGALE
LLGIPYTGSGPLASSLSMDKIMTKRVWLQHGLPTPAFEVLGGSTELRLVPDRLGLPLILKPPHEGSTVGITKVAGYSDMK
AAYELAARFDAEVLAEQFITGRELTVAVLGSGAAARALPVIEIVAPGGNYDYEHKYFSDDTQYFCPADLPADVAADVAAV
AERAYAALGCEGWGRVDFILDRENRPWLLEMNTSPGMTGHSLVPMAARAVGMSYADLCVAILAEAACKVRSPARQD
>SEQF1086_CAE43293.1 UDP-N-acetylmuramate--alanine ligase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKHRIQHIHFVGVGGSGMSGIAEVLLNLGYTISGSDLNESAVTRRLAELGMRIAIGHDRANVAGAGAIVTSTAVAGDNPE
VLAARAARIPVVPRAVMLAELMRLKRGIAVAGTHGKTTTTSLVASVLAAGGLDPTFVIGGRLTSAGANARLGQGEYIVVE
ADESDASFLNLLPVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAILCADDANVREIMPFVSRPITTYGLSP
DAQVCAQDVQADGTRMRFTVQRRDRDVVLPALQVELNLPGLHNVRNALAAIAVATELGVDDAAIREALAAFKGVGRRFTQ
WGDLPVPAAHGGGIFTLVDDYGHHPVEMAATLAAARGAWPQRRIVLAFQPHRYTRTRDCFEDFVRVLGSADGVLLTEVYA
AGEAPLVAADGRALSRALRVAGKVEPVFVEDVGELPQAILDFVRDGDVVVVMGAGSISKTPALVGELA
>SEQF1086_CAE43294.1 UDP-N-acetylglucosamine--N-acetylmuramyl- [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAPTILIMAGGTGGHIMPGLAVAEVLRERGWRVLWLGNPDKMEGRLVPPRGIELVPLRFQGVRGRGAAALLKLPFLLAR
ACAQAWRRLADIRPDVVLGMGGYVAFPGGVMAALRRTPLVVHEQNAVAGTANRWLARLARRVLSGFPGVLPRGEALGNPV
RADLCALPEPAERYAGRSGALRVLVVGGSLGAHALNTTVPQALALLPEQARPQVVHQAGEQHLPALQQAYAQAGVQADCR
AFIDDMADAMAQADLLICRAGAMTVSEVAAAGVAALFVPFPHAIDDHQTANARFLSDAQAAWLQPQASLTPQWLAQWLGQ
RTRQELQAVAGRARTHALPRAAAHIADVCEQAARRAS
>SEQF1086_CAE43295.1 cell division protein FtsW [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLFAELTASVNAVRPGRTRMRNYDMPLIVAASTLLLLGLLMVYSASIALADGPRYASYGRYYFVIRHGLFLTAGLLAAA
VVLSVPIRVWQRLAVPLFMFALILLVAVLIPGIGREVNGAHRWIPLGPLNFQPSELMKLAALLYAADYTVRKQEHMQAFS
RGFLPMACALGGVGMLLLLEPDLGAFMVIVAIAIGILFLGGINGKYFSSLLAVLVGTFLMLIWVSPWRRARLFAYLDPWN
KANAYGSAYQLSHSLIALGRGEWFGVGLGASVEKLHYLPEAHTDFLMAVVGEELGFAGVMLVITLFAIIVYRGFDIGRQA
IAMERTFAGLVAHGVAMWVGVQAFINMGVCLGLLPTKGLTLPLMSYGGSGIVMNLCALAMLIRVDVENRVMMRGGRV
>SEQF1086_CAE43296.1 putative peptidoglycan synthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTTETSRAAAPLVLILGLGETGVAAARWYARQGSPLRVTDSRAQPGGLAALQAALADATVEYRLGCGEQFPPDLLDGVA
QIVLSPGLVPHESPTRELLEQARERNVEVVGEIELFARALAGLAESREYRPRVLAITGTNGKTTVTALTRQLIEAGGMSA
RAAGNISPAALAALMDALDQDDLPQVWVLELSSFQLETTRTLAPDAAVVLNVTQDHLDWHGDMQAYAQAKARILKPARLA
IVNRDDPLAVAMVESLQALNVRSFGRDVPALVGDMGLELGQGVAWLTACESNDFDEPAPAPRRKKDAPPPTRAGGRMSRL
MPVDALRIRGVHNALNALAAMQLARSLDLGWGPMLRTLRDYAGEPHRAELVRSIGDVDYINDSKGTNVGATVAALEGLGQ
QVVLIAGGQGKGQDFSPLVPVVRRHARAVVLIGVDGAAIGKVLEPTGVPCAAAADMREAVRRAAELAQPGDAVLLSPACA
SFDMFRNYPHRGEVFAAEVRELALDRGEVA
>SEQF1086_CAE43297.1 phospho-N-acetylmuramoyl-pentapeptide-transfera se [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRAIGVFEYITLRAVLACATALLIGLVAGPRVIRRLTEMKIGQAVRAYGPESHLVKTGTPTMGGALILIAIAISTLLWAD
WTNRFVWVVLLVTFGFGWIGWMDDYRKVVYRDPEGMPARQKFFWQATIGLVAAVYLAFAVSAPANTELWPLFKAWVGSGF
TMPLPTRADLIVPFFKSVSYPLGVLGFVALTWAVIVGTSNAVNLTDGLDGLAIMPTVMVGSALGIFAYVVGRVDYSKYLL
FPYIPGAAELMVLCAAIGGAGLAFLWFNAYPAQVFMGDVGALALGGALGTIAVIVRQEIVLFIMGGVFVVETLSVMVQVT
WFKYTKRKYGQGRRIFRMAPLHHHFEVGGWKETQVVVRFWIITMMLVLVGLSTLKLR
>SEQF1086_CAE43298.1 Possible murein precusor biosynthesis bifunctional protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSPTNRLNAVQRQHLDQALAWLRGCVAPTADLRLDSREIEPGDVFVACPGLVSDGRQFMDQALARGASAILYETEGAPVA
PAGAQALPVAQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIGTLGALLPDGQSLGGSL
TTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQWPDLQAA
VVNADDPAGERLLASLPAALKTGYSLQGAPADVHARDLQATAHGQVFTLTLPDGEVQIVTRLLGQHNISNLLLVAGALSK
LGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPDALARALTALRPVAQARGGRLVCVFGCGGE
RDPGKRPEMGRIAVERADRVVVTSDNPRSESPQDIIDQILAGIPAGMRAAVQPDRALAIMQTLWSAAPDDVILLAGKGHE
TYQDIGGRKLPFDDRQWARLALLLPHAGAVSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVADVALP
QLVLGDTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGNFNNEIGVPLTLLRLRARHR
AAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQEFMHTVEAVAHENGAVIGALPEDGVAVYPGDEPYAAIWDKLAGA
RRVLRFGLQPGLDVYAERVVTQAHGTQCGVVTPAGSAGLDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAGFQAVA
GRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPAPRALVLGDMGEVGDNGPAMHREVGDYAREHGIDALITLGEAS
RDAAHAFGPAARACASVDEVVAALRGLRPSSILIKGSRFMRMERVVTAFSGNNQAPSGQGDKHAA
>SEQF1086_CAE43299.1 peptidoglycan synthetase precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRVPFFDNPVLRGQLPMWRARLVLILLFGGFVVLAGRALFLQGLSTEFLQQQGERRYERTLTLAATRGKILDRNGVVLA
SSVPARAIWAIPEDAKPIPPEQVAALAQLLQTPVAELRRRLADEDRNFVYLKRQVPMDVADKIKQMALPGIHQQPESRRY
YPEGEVTAHIVGFNNVEDQGQEGVELTFNQQLSGQPGSRRVIKDRLGRVIEDVQAVTLPVDGRDLRLSIDTRLQYLVYKE
LQDARVAHQAKSATAVVIDVHTGEVLALVNLPSFDPNHRETFQVSTLRNQAITDTFEPGSIMKPFTAALALDLGRISTAT
MFETGNGRFQYQGSTISDVSRNGTLDLAGVLLKSSNIGMTMISEKLQSREMWDLFTGLGLGQAPQLGFPGAAPGRLRPWD
RWRLIEKATIAYGYGLSVSLLQVARAYTVFARDGDMVSLTLVKRESAPTSVRVYNPKTAATVRAMLEAAAGPDGTKRAQV
QGYRVAGKSGTARKIVDGKYSAQRHRSSFVGFAPVSNPKIVVAVSIDEPQVGGYYGGAIAAPVFSRIVGGSLRLMGVQPD
APFESTIVAGNPEGAR
>SEQF1086_CAE43300.1 putative cell division protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGRISLIVAALLMLSAISLVTSRYQSRQLFIELGRSQAEARDLDTNWRRLQLERAELARNARIDRAARDDLKMIPIVPDR
TLYMNQPAGGAQ
>SEQF1086_CAE43301.1 S-adenosyl-methyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEFEHRPVLLEPTVDALVLPDFGGKGAHRQAGEPGPDAATRLQHGVFVDGTFGRGGHSRALLARLGAQARLVVFDKDPQA
IAVARELAAGDGRVEVVHGGFATMAEELTARGIEQVDGVMLDLGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVADW
LAQASVDEMREVIADYGEERFAFQVAKAIAACRATRPLHTTLQLAECVAGAVRTREKGQHPATRTFQALRIYINRELEEL
ARALASALDLLGPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHARLPLRESELPQPLVRSLGKVVADDVEVAGNARARS
AILRVAERTGEPLPPGGGAGFVKAGRVPGEPVRGTRAGSKGRRR
>SEQF1086_CAE43302.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFQGSSALTLDAKGRISIPTRHRDALMDRAEGRLTLTRHPDGCLLVYPRPEWEEKRAQIAAFPMSARALQRLLLGNAQDV
DIDGSGRVLIAPELRNASGMTRDVMLLGMGAHFELWDAASLARREAEDLAQGMPDVLNQFSF
>SEQF1086_CAE43303.1 putative ABC transporter ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALASLITLTDVQLAYGHHPLLDHADFAIQEGERIGLIGRNGAGKSSLLRLLDGRTQPDDGDIARSSGLRVATVEQEPAL
DETGTVFDVVCDAHAHPEDWQRPARVRAALERLGLPAEAAIASLSGGMRKRVALARALVDEPDLLLLDEPTNHLDFDGIA
WLEAMLRNWKGAAVIITHDRRFLDAVATRIVELDRGRLLSFPGNFSQWQERKAQWLEAERLEQARFDKLLAQEEVWIRKG
IEARRTRNEGRVRRLEQLRVERAERRERVGNVSLALAQGQRSGKLVAELQDVGKAFGDKVVVHDYSTTILRGDRIGIVGP
NGAGKTTLLKLLLGELPPDSGTARQGSNVSVAYFDQMRAQLDENATLVDIISPGSEWVEIGGARKHVMSYLGDFLFSPAR
AGSPVSSLSGGERARLLLARLFARPANVLVLDEPTNDLDIETLELLEELLQEYAGTVLLVSHDRAFLNNVVTQTIAAEGD
GRWRDYVGGYDEWQAQRPAQAAAPKAEKPAETAKPAAARPKPVRAARLSAWDLRELEALPDAIATIEARQAELSGKLADG
SLYRDAPDEVERINAELATLESELEEKFARWELLEARRGDSA
>SEQF1086_CAE43304.1 dihydroorotase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRPASMSNQHATELTITRPDDWHLHLRDGSALEAVVLDTARQFARAIVMPNLRPPVTTTEQALVYRARIEAALRKAGGDT
AAFTPLMTLYLTDNTPAEEIVRAHESGQVAAVKLYPAGATTNSDAGVTDLLGKCGAALAALERCGMPLLVHGEVTDPAID
VFDREAVFIERVMQPLRRAYPGLKVVFEHITTREGAHYVRDAEGPTAATITPQHMLYNRNAIFTGGVRPHWYCLPILKRE
VHRQALVEAATSGSPRFFLGTDSAPHARGLKEHACGCAGCYTALHAMELYATAFDAVGRLDRLEGFASFHGPDFYGLPRN
TGTLTLRREAYEIPAEVAFGDTTLVPLSGGESLGWRALA
>SEQF1086_CAE43305.1 putative hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYARSPLESIRLFHDELTALRRDLHAHPELGFEEVRTSGIVAGALEALGIEVHRGIGKTGVVGVIRGRTCDSGRMIGLRA
DMDALPMTEDNDFGHKSTKPGLMHGCGHDGHTAVLIGAAKYLAQTRNFDGTAVLIFQPAEEGRGGAKAMIDDGLFDTFPC
DAIYALHNWPGLKPGTVGINPGPMMAAADRFEITINGRGGHGAHPYQTIDPVTVAGHLITALQTIVSRNVNPLDSAVLSI
GSVQAGHPGAMSVIPREARMVGTVRTFRRSVQEMVESRMRELASAIASAFGATAEVLYERIYPATLNTPQHANLVADIAT
EMIGRENVVRDLVPSMGSEDFSFMLQMRPGAYFRLGQGGAESGCVLHNSHFDFNDAVIPLGSAMFSALAERGMPLAD
>SEQF1086_CAE43306.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATPSKTATARKPNAAFMKPLTPSAELAAVIGSEAVPRTEVTKKIWDYIKKHNLQDASNKRNINADAKLRPIFGKDQVTM
FELTKLVNAHLK
>SEQF1086_CAE43307.1 putative membrane protein, partial [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
VIVSDPQTLQPGGAPDLRTLTHVAYGLYALGFLTGGFLGIATLAAVVLMYVKRGDTAGTMYASHFDWLLRTFWWALLWLA
ISAIATLIFIGWIGVVATVVWVLYRLIKGWLALLEGNAPSSYT
>SEQF1086_CAE43308.1 leucine-responsive regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGLMMLGVELDRTDRRILAELQRDGRLSNQELAERVSLSPSPCLRRVRRLEEQGYIKRYVALVDAEKVGLGLLAYVTIKL
NKHSGGSHAPMGNFARDVQLWPEVVECYAMSGDMDYLLRIQVADLAHFSRFAMDTLMQHPAVVDMKSYFALQQIKETTEL
RI
>SEQF1086_CAE43309.1 putative hemolysin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAENFQPWENPMGTAGFEFIEYTAPDPVALRKVFELLGFKAIAKHRHKDVTLYRQGGVNFLINAKPDSFAQRFARLHGPS
ICAIGFRVQDANKAYKRALELGAWGCDSHSGPMELNIPAIKGIGDSLIYLVDRWRGKQGHGGIGDISIYDVDFEPIDRDT
AQTDLNHTGAGLTLVDHLTHNVHKGRMAEWSEFYERLFNFREIRYFDIEGKVTGVKSKAMTSPCGNIRIPINEEGTEEKG
QIQEYLDLYRGEGIQHIAMATDDIYQTVEALRRNGVVFLDTPDTYYELLDRRLPDHGEDVTRLRKNRILLDGAPGGGLLL
QIFTENQIGPIFFEIIQRKDNDGFGEGNFKALFESIELDQMRRGVVKQVD
>SEQF1086_CAE43310.1 putative methionine sulfoxide reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSSQPAGAATEAAVLGGGCFWCVEAVFKDLRGVTGIEPGYAGGHVEHPTYEQVCGKDTGHIEVARVEFDPAVLSYGDLL
RVFFATHDPTTPGRQGNDVGPQYESAIFWQDERQREQAQAVMDELRAQQVFDAPIVTRLLAPAKFWPAEDYHRDYYALHP
EQGYCQFVIAPKVAKFRKQFQDRLAR
>SEQF1086_CAE43311.1 cytochrome c-552 precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHLKSSLAAWAVLACLAGGSAGAQPAGEALARNKNCMACHQVDSKRVGPPLRSISERYAGQSEAAAYLAGKIRGGGRGAW
GAVPMPAQPQVSDADAHALAEWILSLPAKP
>SEQF1086_CAE43312.1 dihydroxy-acid dehydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDNNRSRHITEGVARAPNRAMYYALGYTEADFQNPMIGVANGHSTITPCNSGLQRLADAAIEAIRVSRANPQVFGTPTI
SDGMSMGTEGMKYSLVSREVIADCIETAAQGQWMDGVVVIGGCDKNMPGGMMALARMNVPGIYVYGGTIKPGHYKGKDLT
IVSVFEAVGEYTMGRMDETDFKAIEQCAIPGSGSYGGMYTANTMSSAFEAMGMSLPYSSTMANEDQEKVASAAESARVLV
EAVRRQLRPRDIITLASIENAVAVIMATGGSTNAVLHFLAIAHAAEVPWNIDDFERIRKRVPVICDLKPSGRYVATDLHR
AGGIPQVMKILLNAGLLHGDCITITGKTVAETLANVPDAPPPGQDVIMPIERALYPQGHLAILKGNLSPEGCVAKITGLK
NPVITGPARVFDSEDDAMAAIMDRRIRDGDVVVIRYEGPKGGPGMREMLAPTSALVGQGLGETVGLITDGRFSGGTWGMV
VGHVAPEEFVGGPIALIREGDSVTIDAHQLLLLLLNISDEEMAARRKAWAQPKPRYVRGVLAKFGKLACTASRGAVTDAF
EE
>SEQF1086_CAE43313.1 prolipoprotein diacylglyceryl transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLQYPQIDPVALRIGPLAIHWYGLMYLIGFALVYAFGRRRITSGHTTSMTVRDLEDLIFYSVLGVVLGGRLGYVLFYKPA
HYLANPLEIFYLWEGGMSFHGGLIGVIVVMLLFAHKKRLGFFTVSDFIAPLIPLGLAAGRLGNFINGELWGRPTDVPWAM
IFPQSGDGLPRHPSQLYELGLEGIVLFALLWWYSSKPRAAGQVSAMFLMGYGAFRFLVEFTREPDNFLGLLAAGLSMGQW
LSIPMVLAGAGLYLFTARPPSR
>SEQF1086_CAE43315.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE43316.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MERVDVTILGRDYSLACSAEEKPVLMAAVRHVDQLMLRIQGSGKVSSNERIAVMAALQVAGELLAMKAPDGPLGGLAVGD
FKRRIEEMNLMLDDALSGQEKLL
>SEQF1086_CAE43317.1 hypothetical protein BP3048 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQVLPNIAVFLSLREEARSVPGWFTIAPMLQDLDQLAARIGQLVQRTRHLHAERDALRVRLNDSESEQRKLKQRCADFET
ELQALQARLREHDGATATQLAEAQQTEVALREQLAREAAERQALESRVSAREAELQGNLRARDTDLQRLRVAASTARERI
DAVLARLPGAPAGEQP
>SEQF1086_CAE43318.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43319.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQLRNRQDFWSGVMFIVLGLGFSWQASSYQMGTAARMGPGYFPFWLGLVLALLGAIVLISALSKKATETAVEGFDWRIVF
LVVGSVVLYALILKPLGVYLSVFILVVVSSLASHEFSWKVAVANGIFLVVFSYLAFIKGLGLIFPLWPSFLGMN
>SEQF1086_CAE43320.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MELFDNLMLGFSVAFTPENLAYALLGCILGTLIGVLPGIGPVPTIAMLLPITYVLPPVAGLIMLAGIYYGAQYGGSTTTI
LVALPGETSAVVTVLDGHQMARNGRAGAALAIAALGSFFAGCVATLLLAAFAPPLAEVSFKFGPAEYFSLMVLGLVGAVV
LASGSLPKAIAMIILGLLLGMVGTDVNSGVARYDFGIPELQDGIDFAIVAMGVFGFAEIMTNLEQKENRVDITDKIGSLY
PNFQEFKEAAPAVVRGTALGSALGILPGGGAVLSSFASYTLEKKISKNPERFGKGHPAGLAGPESANNAAAQTSFIPLLT
LGIPGNAVMALMVGAMTIHNIQPGPQVMTSHPELFWGLIASMWIGNLMLVVLNLPLIGLWVKLLKVPYRILFPAILVFCT
IGVYSLNYNTFDIFMTAAFGVVGYVWAKLKCEGAPLLLGLVLGPMMEENFRRALLLSRGDFSTFVTRPLSATLLAVALFL
VVLVALPAIRKKREETFVEEE
>SEQF1086_CAE43321.1 putative gamma-glutamyltranspeptidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMKFDWNNPYPSTRIPVFARNVVATSHPLAAQAGLRILALGGNAADAAVASAATLALVEPASNGLGSDCFALVWDGARLH
GLNASGTAPAAWSPGYFQRKHQGAIPLRGWDSVTIPGCVAGWASLHDKLGSLPFADVLAPAIEYAERGFAVPPTVQRRWA
DQVDPLRSLPGFAEHFLPHGRAPEVGEHFVLAGAAATLRRIAASGGRDFYEGETAQKLVAHAQAHEAALTLGDLRDYAPQ
WVEPISQAYRGHALHQLPPNGQGLAALIALGIVEHFDLASRPAEHPDTQHILIEAMKLAFADVHAHVADAAHIRIRVEQL
LDPAYLAERARLIDLRRARVYNAAQAPQGGTVYLACADRNGMMVSFTQSNYMGFGSGIVVPGTGISLQNRGCCFSMDPDH
PNVVGGGKRPFHTGIPAFLTQDGAPLMSFGIMGGNMQPQGHLQALVRMLDYRQQPQAACDAPRWKWNRGLSVDIEAAMPA
QVTDALRARGHIVEVAAPADKDFGSGQFIWRLGDPAVDGYVAASDSRRDGLAAGF
>SEQF1086_CAE43322.1 putative oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGLPMAGHLARAGHQVTVYNRTAAKAQAWAAEFGGKAAATPREAAAGAQIVFCCVGNDDDLRSVVLGADGAFAGMQAGAV
FVDHTTASADVARELYAAARELNLQFIDAPVSGGQAGAVNGALTIMCGGDSATFEDIKPVAHAFGRAVTLVGPPGAGQLA
KMVNQVCIAGVVQGLSEAIAFGQTAGLDMKLVLDVISKGAAQSWQMENRGATMVDDQFDFGFAVDWMRKDLGLVLAEARN
NGARLPLTALVDQFYGDVQKMGGNRWDTSSLIKRLRD
>SEQF1086_CAE43324.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE43325.1 uracil-DNA glycosylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPNDNRLAPAALAAQAAALPAAWRHVLEQPAVARAFASVLGHVEQRLAEGAVVYPAAPFRALDQLAPADVRVVILGQDPY
HGPGQAQGLAFSVPDDCKCPPSLRNIFNEIAVDYPRPTRHDLSAWTRQGVLLLNTSLTVEDGQPGSHAKRGWETVTDALI
AEVARDPSPKVFLLWGAHAQAKQALVPADAGHLVLAANHPSPLSARRPPVPFVGCGHFRQTNAWLQQRGQKPVDWSGEQN
NASRQGEFAL
>SEQF1086_CAE43326.1 putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHMRRYMRQGKAMSFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALNRIAHQPG
NKGVGVQVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLKAGRVKLNT
VHTLVLDEADRMLDMGFIEDIETIIERLPKERQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANITQSLLYADD
AAHKMRLLDHVLRDARLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRGQLRVLVATDVAARG
IDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQAFTLATHAERHKVRRIEHYIGQSINAEVIAGLEPQRTPRPSTGG
PRRGGKPMGGKRPGGYGAPREFGDRPQRPYGDRPQRDFGDRPQRDASDRPQRSFGDRPQRDFGDRPQRPYGDRPQRDFGD
RPQRDFGDRPQRPYGDRPQRDFGDRPQRSFGDRPQRDVGDRPQRDFGDRPQRSFGDHPQREGGWHGAPREGRSFDKRPGG
PAKRFAKPAAPRRG
>SEQF1086_CAE43327.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRGPARAAALHRAFSLHGKIAVMQRPASSSLPPLDPAASAHSASVARHLRAAIAAAGGWLPFSQWMSAALYAPGLGYYT
AGATKLASPADAQGPALPAGDFVTAPELTPLFAATVARQVAQVLRATDTASVLEFGAGTGALAEGVLRALAGMDCPARYL
IVEVSADLRQRQQSRLAPFGDRVQWLDQLPDAFAGCVLGNEVLDAMPATLFRWSETGTVQERGVTVDADGAFAWQDRDAD
APLAQAVAQRMPPLPGYVSEINLQAEAWVRGMGLWLQRGAALLLDYGFPRSEYYHPQRAGGTLMCHLRHHAHADPFVAPG
LQDITSHVDFTAMADAALAGGLQVLGYLSQARFLVNAGLLDALSQLDPADARAYAQAVAPVQKLLSEAEMGELFKVLAVG
RDMPEPLLGFARGDRRGTL
>SEQF1086_CAE43328.1 tRNA nucleotidyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRTDDPGVAGLRVYIVGGAVRDDLLGLPAGDRDWVVVGATPEDMARRGFIPVGGDFPVFLHPRTKEEYALARTERKSGR
GYKGFTFYTGADVTLEQDLQRRDLTVNAIARTPQGELVDPLDGVADVRARVLRHVGEAFAEDPVRILRLGRFAARFGDFS
IAPETMQLCRRMVEAGEADALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELHDDTAVRAEIDRAAAAGLPLA
GRYALLCRHTPERDALGRRLRAPVECMDQARLLPLAVDALAASATPAAQLDLIERCDALRKPERFDALLQAAAIVAPVDL
SAWRARVQAVRAIDAGAIARQCAGDPARIKPALRQARLQALGGA
>SEQF1086_CAE43329.1 putative transglycosylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRGWLPVLALFTAACAPVDAQQRAAASTAPAAVSMQAAPDAEQARRPIAVPPAVLAGLPPAPQTPAQQAVVAAREASQRK
QWSVLGALAPQARTDPLGMYPEYWLLRYQLWSPPGGRRPDAELQRFLAAHAGSYLEDRLRGDWIQAAARAGDFETVRRLG
PVKQGNAQIACAGLDARHMTGQRASAAEAVAAFAPGTACWALYDQLVADGVLGWDEIQPQLRDAIEAGKLSDARKLAQYI
FEPKDQKSYDQMMKNPMKWLVRQDKSPVGRNEKELVTLALARLNKPDVSVADSYLRREWSRHLPRQNLAWVRSQYALVAV
LNQDPRAYEWYREAGAVRMTEYSHAWKVRSALRQPRIDWKWVIEAIEGMPPSQQAEPVWVYWKARGQAALGRAQQASQAY
ASIADQFNFYGQLAAEELGRRITVPPAPAPVTDAEIAEARAHPGLRRAIYLFRLGWRAEAVPEWNFSLRGMSDRQLFAAA
ELARAEGIYDRVVNTSERTAEQFDFSQRFIAPFEGRVSAKARAIDLDPAWVYGLIRQESRFIMDARSHAGASGLMQLMPA
TAKWVAGKIGMSDFRPGSVNDFDVNTELGTQYLNIVLQGLDGSQVLASAGYNAGPGRPRNWRASFGHPVEGAIFAETIPF
NETRLYVKNVMSNAVYYAAMFSGQPQSLKERLGSIVPPQAALATNQR
>SEQF1086_CAE43330.1 5-formyltetrahydrofolate cyclo-ligase family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHTQNTAKNTAAALRARLRQSRAELTSSQRSRGALLMRGRLFTWLNLACEQAAAQGRPLSRVAAFWPMEDEPDLLPLLEQ
WVESGIAVCLPAVQERDAPLVFRDWTPDSAMRTGAYGVQEPAAGPAVVPDVVLVPTLGYTLDAARLGYGGGYYDRTLAAW
QAAGASPTTIGIAWSEGLLPDDYQAAAHDIALDAILTPDGWVPGAPLVASGAAAGHRSAGSRFLLR
>SEQF1086_CAE43331.1 putative integral membrane transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPAIRQSYERNMQGNHQTATHQPVRASIAAFVGTMIEWYDFYIYATAAALVFGKLFFPSVDGFYGTLAAFGTFAVGFLAR
PLGGAVFGHIGDRIGRKKSLVITLLLMGTVTVLIGLLPTYASIGIWAPILLVALRFIQGIAVGGEWGGAVLMAGEHSPDR
SKRTFFASFAQLGSPAGLILSMLMFKLVTSLDDAAFMDWGWRVPFLFSAALLVVGFAIRLSVNESPDFLAEQAEKARLKD
AAAKQAADKAPIVEVLRGASGLLALAVGANVLGIAGFYFTNTFMLAYTTQYVGLSRGVILDCLLVVSVMQFIITPLSAYI
ATRIGSRRFLLITSFLSIFTPYVMFNMVDQGTLTSLTLGVGLAVVCLGAYYAVIAGYVSDSFPTRIRYTGISMAYQLSGA
IFGGLTPILGTILAEKFQGHWWPLALLFSGISLLSMISVIFLANHRTDAVTAPLRSA
>SEQF1086_CAE43332.1 putative aminohydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKAFYHPDQKLHHPQTYFSRGKMRTPQEVPARLDALAEAARKLKFDVREPVDAGAGAIGAVHSLDYLRFLREAHARWKQL
PDDWGDEVVSNVFVREPNALRGVLAQAARYLADGSCPVGPHTWQSAYWAAQCAISGAQTLLDGERHAYALCRPPGHHARR
DAAGGFCYLNNAAIAAQMLTQRYKRVAILDTDMHHGQGIQEIFYERSDVLYVSIHGDPENFYPVVAGFENERGAGEGYGY
NVNLPMPHGSPEPVFFDRLQQAQRAIELFQPDALVLSLGFDVFEKDPQAMVAVSANGFERLGQAIGAFKLPTLIVQEGGY
YIEGLEDNAERFFAGLAKA
>SEQF1086_CAE43333.1 putative transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSASPAPKKSAAALAPERLDWNLLRTFMFVVQERGVGRAATALHLSQPAVSQALKRLEQAVGGVLLYRRSGEFRLTNLGE
EIYRLAREMYGMVARVEEAAIQDEDDIAGTLRLLVMSKIQSTAYDDFLAHFHRRYPKVEFSVDVMQSAAILDALAKRVPA
LGLCLCRKAIDTLERRLFLRHRYVVVCGRHHPFFSRRNVRVEDLMDQNFVCFASDQLGDTLSPLTIFRDQQGFTGRIVGT
SPYLEEIRRMVVAGVGLSFLPEHLIRQDVLAGELRRLPPEHNVAEIDVFLAWHRQRKLSAAEQAFLAAFERFLHRTPLEM
RAR
>SEQF1086_CAE43334.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE43335.1 putative methylenetetrahydrofolate reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQSTAPAFSLEFFPPRDIAAQERLVRAAKQMLAIQPRYVSVTFGAGGSTRAGTADTVRTLRNLGCDAAPHLSCIGATRD
QLRDILAAYREQGVRRLVALRGDLPSGMGGDAGELRYASDLVAFIRQETGDWFHIEVAAYPEMHPQAESPSADLAHFVNK
VQAGADAAITQYFFNPDAYFDFVERAQAKGVAIPIVPGIMPITNHTQLVRFSEMCGAEIPRWIRLRLAEYGDDKASIRAF
GLDVVSELCQTLLENGAPGVHFYTLNHAEATLGIWKALNA
>SEQF1086_CAE43336.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALILVWILNAVALLAVAYLLHGITVASFGSALVAALVLGLLNMLVKPVLVLLTLPITIVTLGLFLIILNALLFWFAGSV
LRGFQVNGFWWAVAGAILYSIIAGLLTKLIP
>SEQF1086_CAE43337.1 adenosylhomocysteinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAVTDKSVADYIVADMALAGWGRRELAIAETEMPGLMAIRDEYAASQPLKGARIAGSLHMTIQTGVLIETLVALGAEVR
WASCNIFSTQDHAAAAIAATGTPVFAIKGETLEEYWQYTHKIFEWPEGRHANMILDDGGDATLLLHLGARAEQDISVLAK
PGSEEERVLFAAIKETLGRDPKWYSTRLAQIKGVTEETTTGVHRLYQMSQKGELAFAAINVNDSVTKSKFDNLYGCRESL
VDGIKRATDVMVAGKIAVVAGYGDVGKGCAQALVALRAQVWVTEIDPICALQAAMEGFKVVTMEEAAAHADIFVTATGNY
HVITRQHMEAMKDQAIVCNIGHFDNEIDVAGLENCQWEEIKPQVDHVIFPDGKRIILLAKGRLVNLGCATGHPSFVMSSS
FANQTIAQIELFTRNEAYTTGQVYVLPKHLDEKVARLHLKKLGVKLSTLSKQQADYIGVPVEGPFKPDHYRY
>SEQF1086_CAE43338.1 putative glycosyl transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRIVLVTDAWHPQVNGVVRTWTTMQGLLQDWGHELIVVSPQGSRTVPAPSEPDLRLCLQPGRQLRRVLGDVVPDALHIAT
EGPLGLAARRMALRRGWRFTTSFHTMFPDYLQARMGIPAGLPWRYLRWFHRPSQRVLVPTPTVRDIVARRGLGNLQVWSR
GVDARRFAPGPRDFLPELPRPLFLCVGRVAREKNLDAFLSLALPGSKVIVGGGPDEARLRRKFPAAHFAGPQADDRLAAY
YNAADVFVFPSLTDTFGLVMLEAMACGTPVAAFRSEAPLAVVQQGATGFLDDDLAQACRAALALDRDEVRAHALTRTWDA
VARDLLAAFTPLVEAPLALPPAAQRI
>SEQF1086_CAE43339.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDASFPVAPRVESDETPDRPARVFTATDSPCVAVCSTLFDDICRGCGRTAMEVANWVFMSEEEKREVWVRIQAQGYPRR
NNY
>SEQF1086_CAE43340.1 S-adenosylmethionine synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MANNDFLFTSESVSEGHPDKVADQISDAILDAIFTQDPNARVAAETLCNTGLVVLAGEITTTANVDYIQVARDTIRHIGY
DNTEYGIDYKGCAVLVAYDKQSPDIAQGVDRSSEDYLNQGAGDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDG
RLPWLRPDAKSQVTFRYVDGRPAEVDTVVLSTQHSPEISQASIREAVIEDIIKPSFPEGLITPKTKFLVNPTGRFVIGGP
QGDCGLTGRKIIVDTYGGACPHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLARQCQVQVSYAIGVAEPINITVYTE
GTGVIPDEQIAKLVREHFDLRPKGIVNMLDLLRPIYTKTAAYGHFGRSEPEFSWEATDKAAALKQGA
>SEQF1086_CAE43341.1 putative acyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLVTLLRMAAALPLPFLHAAGRLLGRLAYAFPGKYRDRLRANAAQAGYPQPAFARRAAGEIGAMILEMPKVWFRNEQSLG
KVVSDDYAIVEAARAEGRGILFLTPHLGCFEITARYLARQMPMTVMFRPPRKAALAPVLETARNTSAVNAVPATMQGVRT
LRRGESVGMLPDQAPGVGDGVWAPFFGRMAYTMTLPGKLASQTGVAVILTAGERLPGGRGWRIHYARVPEPLPDGPQEQA
ALINSAMESLIRRFPEQYLWGYNRYKVPRGAPPAPDSARQEPER
>SEQF1086_CAE43342.1 putative acyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQFKTRALTAMLRGFARMRPATRQRAGALVGWLSYRLARSRVRIVRRNLELCFPGQPEAVRERWTREHFRALGQSIVDR
GVLWYGSPEAVREMVTQTGAERINALIAAGRPVILLAPHFVALDAAATRLTMEVPSGATMYTPQSDPAVDAIVRAGRARF
NEVFLVSRKDGVRDLVRHLREPRPVYYLPDMDFGRAGSIFVPFFGVPAATLLATAQLARKWNAAVLPILDFWDPRTGRYH
VEVLPELPDFPGDGSLEDATTRLNRELESWVLRCPSQYYWVHRRFKTRPLGKPKLY
>SEQF1086_CAE43343.1 diaminopimelate epimerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGDNPCMMWNFTKMHGAGNDFVVLDGVRQDIAMTPERARALADRHFGIGADQILLVEPATRADADFRYRIFNADGSEVEH
CGNGARCFVRFVHEQGLSARNPLRAEIVTGVIVLDEGEDEQVTVDMGSTRFDPPSLPFDSTGLSAQTQGQDTVWNLEIDA
PAGLPRSVAISTVAISNPHAVQVVDDVDAAPVGVIGPLVESHPRFARRVNVGFMQVVDRHQIRLRVYERGAGETLACGTG
ACAAVAAGVRRGLLDSPVRVHTRGGMLTVDWNGERLRMTGPAISVFSGQVDIDRLVFTSGLHR
>SEQF1086_CAE43344.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAHTPTEPLNAHAVAEFLQHNPDFFIEHADVFATLQIPNPHGSRAISLGERQIQTLRERTRELEWRLSELIRNANSNET
IGDHLSQWCCRMLAEADAQHVPGEIALGLAEQFDLNHVALRLWRLEGLPESGYGEPVSDDVRTFADSLKTPYCGTDTEFE
AVSWLDAKPKSLALVALRPDADAPTFGLLVLGSDDAERFAPDMGTAFLEAIGKLASAALRRLGTPPLAAA
>SEQF1086_CAE43345.1 putative integrase/recombinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAAPAASPLPQPMADWLRHLQAHRRYSAHTLDGYTRDLRQLAQQAAAAGLPLERVANGHIRHFVARLHAQGLGPRSLAR
ALAAWRGFYQWWAPAAGLPGNPATGVRAPKAPRGLPKALSVEQTQVLLDHAPARLATEPAALRDHAMFELLYSSGLRLAE
LVSLDLRYERTPEYESRSWLNRDDAEVIVVGKGGKRRSVPVGQSALAALDKWLQARPQLAAAGAGAQDAAALFVGARGRR
IAPRVVQLQLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRA
GRKTSR
>SEQF1086_CAE43346.1 putative outer membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MICYIVSFNENGTSFYREGNMRFERHPLSAALALALAWQGAHAQASADGTSEAATLAPITVSASPLAGDLDSMTAPAAVL
EGDQLLLRRQGTLGDTLDGLPGVHADTFGGGASRPVIRGQTAPRVKVLSDGSELMDASAISPDHAVTTEPLLADKIEVLR
GPATLLYGGGAIGGVVNVLDRKIPTAVPQQGIEAEAELRGATGTKERAGAIGITAGSGNFAVRVEGLKRRSSDYRVPDWP
DGKLAGSYSESGQGTVGMSWITPRGYVGVAFTHLESKYGLPGHNHEYEGCHPHGSHLHCGGHDDHGHGHDEHEEGEAEHD
HGHEHGAGDVPYVKLRSNRTDLRAEYTDPFAGFEKIRFRGGLTDYRHDEIEGGQLGTRFQNRGYDARLELTHRPLYGWHG
VVGVQTSYSDFRATGEEAFLPRSKTRAHGLFLLEEYRWADWRFELGARQDWQRVSPQSGAPASRTAGTSLSAAAIWDFAP
QYSLALSVSRSQRLPSAQELYADGVHLATNTYEIGDPGLDRETSRNVDLTLRKHSGDTTFSVSAFHNRVKNYIYANTLDR
YEDFRLIEYTQRDAEFTGVEGEVRHRFGKVFSAAVFGDYVRGRLTGGGGNLPRIPAARLGVRADAQWQNWAGGVEYFHVY
RQDDIAAYESSTPGYDMVNATIRYRGKLDRTAYEIYLRGNNLLNKLAFNHASFISTVAPLPGRSVLLGVRLTY
>SEQF1086_CAE43347.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLVLGCLAALPAAAQGAHPFGVPEATGAPGWLAGWFGQVAMWQAHFYRQLTGAVRAWQAEGGAAWMLIGLSFAYGVFHAL
GPGHGKAVIASYVLANRQTARNGAWLALLSALAQALVAVALVTVLAVALGATAAAMNRATQWLETAAYAVVSLLGAWLVW
QKALRPWWGSKGGHGHGHHAHHHAPGCACGHAHAPSARQAAGPLNARKAWAAILAVGLRPCSGALIVLVFALAQGFFLAG
VVATLAMGLGTGLTVATLVALAAGARDAATRLGARLSTRRAAMLRQAIEALAAVAVLLLGLSLLGGQLAALR
>SEQF1086_CAE43348.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MWIDARAVVEFDAAGRIAAVRQVWRFDDMFGAYATQGLSRKPGGGLPPDVLRTMAEDWMKALGEPVSHYFTRVTQGARTL
PFGPPRDAAVSFEDGRLTLAFTLPLAEPAPAGGATAVDIYDPTYFVAYAFDEVGATALRGAPAGCSQAYRPPRPLDWATM
QQLAAIPADPEALPEELFAITKGLTHRIEVTCP
>SEQF1086_CAE43349.1 putative periplasmic solute binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKSRILALAAAVLLAPLVAAAQPLQVVASFSILADIAAQVGGPDVAVQSLVGPDGDAHEYEPTPADARKLAAAQVLVVNG
LDFEAWLPRLQKAAGFAGRTVVASEGIEPRRLDDAHEEHGDHDHGHHGEHGHHHHGDLDPHAWQDLANGATYARNIARAF
AEADPAHAQAYRQRADAYVARIEALDQRVRQLFGAIEPARRKVVSSHDAFGYFGQAYGVRFVALAGVSTDAEPSAADMAR
IIEQVRRERVPAVFVENIANPRLAQQLVRETQARLGGTLYSDALAQPGKPAGTYLGMFEWNAQQLAAALRP
>SEQF1086_CAE43350.1 putative ABC transporter permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLAEWLAGPFADYGFMRRALAGAVALSAGAAPLGVFLVLRRMSLMGDAMAHAILPGVAAGYLLSGLSLGAMMAGGLLTG
LAVALLAGLVARLTPLREDASFASFYLISLGLGVLLVSLRGSNMDLLHVLFGTVLGLDDAALLLVTAVANATLCILALAY
RLLVAECLDPGFLRAAGGRGAWVHMLFMGLVVLNLVAGFQVLGTLMVVGLMMLPAAAARFWAGSAPGQIALAAVSACAAS
AVGLLVSFHANVPASPAIILAAGAFYLFSVACGPHGGLLVAARRARRARPWQPEGDLP
>SEQF1086_CAE43351.1 putative transport protein ATP-binding [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAMTAPCIALRGAAFGWHGRPAVHGLTGEFSRGSMTAIVGPNGAGKSTLLKGLAGVLRPLAGALECEADLRRRLAWLPQA
SELERGFPITVADMVALGAWGRVGAWRRFDAAETARVHAALRRVGLQELAGRALATLSGGQMQRALFARLLLQDAPLLLL
DEPFSAIDAATTDVLLALLREQHAEGRTVIAVLHDLDLVRRHFPRTLLLAGRQVAWGETGQALGDANLARARGLAMREAA
>SEQF1086_CAE43352.1 putative regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTVMSASRPTRADTVGAQLDLAESLCTQRGRRLTPIRRKVLELLLVHGRSLKAYELLEAMRAEHPGAAPPTVYRALDFLM
DEGLIHRLDAVNAWSACHDAAGEPHDLLVVCTGCGAVAEISDPDMSRQLAERVARTGFALATHETEIRALCPQCQQNRPA
QAHGHTHSHH
>SEQF1086_CAE43353.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTARSLDKMVPVTILTGFLGAGKTTLLKRILTEYHGRRVAVIENEFGPESIDNDLLVQDRDEEIIELSNGCVCCTVRGD
LMRTLSDLRARREAGELSFERVIIETTGMANPGPVCQTFFMDDDIAEYYRLDAVVTVVDAKHGMATLDAQEEAQKQVGFA
DRILVSKKDLVNDVDYAALHQRLVRINPRAPITPVHFGEADLKSIIDISGFNLNSILDIDPAFLADEHPDAAHDHHDHDH
GHGHDHDHDHDHEGECGAHCNHHHHHHHAHHDDEIGAFVFRSNKPFDPARLEEFLGGVVQVYGPDLLRYKGILYMKGINR
RMLFQGVHMMMGAEPGKAWTAAEKPSTKMVFIGRKLPQEIFTRGLEQCLVG
>SEQF1086_CAE43354.1 putative dnaK suppressor protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATKAATKKSSKSTSDTAIDLPSEQELLAMPEADYMNDRQLAFFKERLKQLEQDILANAGETTEHLRETQFVPDPADRAT
IEEEHALELRTRDRERKLLKKVQQAIARIDSGEYGWCEETGEPIGVPRLLARPTATLSLEAQERREMRQKLYGD
>SEQF1086_CAE43355.1 ATP-dependent protease heat shock protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEQFHATTIVCVRRGNHVALGGDGQVTLGNIVIKGTVRKIRRLYHDKVLAGFAGATADAFTLQERFEAKLEKHQGHLMRA
AVELTRDWRTDRVLRRLEAMLIVADTEHTLVLTGNGDVLEPEHGLAAIGSGGAYAQSAALALLRNTELPPEAIVKQSLEI
AGDLCIYTNQNHVIETLGA
>SEQF1086_CAE43356.1 ATP-dependent Hsl protease ATP-binding subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSANHMTPGEIVSELDKFIIGQNRAKRAVAVALRNRWRRQQVAEPLRHEIHPKNILMIGPTGVGKTEIARRLAKLANAPF
IKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRSHAEDAAEDRILDALVPPPRGASGEPERGEDNSARQTF
RKRLREGKIDDLEIEIEIAQPMPQMDVMTPPGMEEMAEQLRGMFAGLARDKKKSKKIKVREAFKLIVEEEAAKRVNEDDL
RAAAITNVEQNGIVFLDEIDKIAARQETGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDHILFIASGAFHLARPSDLI
PELQGRFPIRVELDSLSAEDFVSILSETDASLIKQYTALLGTEDVKLEFTDDGIRRLAELAFSVNERTENIGARRLYTVM
EKLLEELSFDASANSGEVITIDAAYVDLQLAETAGSQDLARYVL
>SEQF1086_CAE43357.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAFSRKYSSRMAVATAMAVVSLATPLAFAQQADATGEVRRVDAAAGKVSIKHDAISALDLPAMTLVYQIDPALLAGIKPG
DKVRFTATRKDGRYVVTAISK
>SEQF1086_CAE43358.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MANRLSVIATRTGDDGSTGLGDGSRVGKDTARIAALGDVDELNSVLGLLRAETLPAEMDADLSTIQHDLFDMGAELCIPG
HIALADEQVAHLDARLAHYNAGLAPLREFILPGGSRAAALCHLGRTVARRAERSVVALARAEVVNAPVRQYLNRLSDLLF
VLARHVNQAQGARDVYWASRHARPAD
>SEQF1086_CAE43359.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE43360.1 putative phospholipase D protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPRLLSRIRAARARAAALLALAGCAILLGACTLPPPVDRTASHALDATQARATPLGQGVGELADTHPGLSGFHVLGDAQD
AFAARMLLARAATRTLDVQYYIWRNDMTGTLLLQALHAAAERGVRVRLLLDDNGISGLDDALAALDAHPNAEVRLFNPFP
TRSFKALGYLTDFSRLNRRMHNKSFTVDNQATIIGGRNIGDEYFGATDGVLFADLDVLAVGPVVGDVSAEFDAYWASESA
WPAGPLLPAPGAQTLRALAERAARIEQDPAAGDYMSALRELPFIRELMAGRLPLQWAPARMVSDDPAKGLGKAPPAGLLT
QQLRNILGEPRRTLDLVSPYFVPAEAGTQAFAALARGGAQVRVLTNALEATDVAVVHSGYAKRRKALLQAGVRLYEMRRS
YAGPKPQGRGRFGSSGSSLHAKTFGVDGERVFIGSFNFDPRSANLNTELGFVIESPDMARHIAATFDQDIPAATYEVRLD
DDGSLYWLEQRDGATVRHDSEPGVSLWRRFSVWLFSLLPLEPLL
>SEQF1086_CAE43361.1 molybdenum transport ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPSDFPPGQAGIHARFRVDYPEFSLDVDLRLPGRGVTALFGQSGSGKTTCLRCMAGLAPVSDGYLDINGEVWLDSAARRA
VPTHKRALGYVFQEASLFEHLDVLANLRYGMKRVPPALRRVDLEQATGLLGIGHLLARMPAGLSGGERQRVGIARALLTS
PRLLLMDEPLAALDVQRKREILPYLERLHDELDIPVIYVSHSPDEVARLADHLVLLEQGRAVASGPLDALLTRLDLPMAM
TDDASVVVTGEAAGFDPGYALLTLQLPGGRARLRFVHQAAPAGQRLRVVVHARDVSLALQQPREGSILNVLAVRVLEMAP
AANPAHVMVRLDADGTPLLARITRYSRDRLALAPEMQAWAQIKAVSLLA
>SEQF1086_CAE43362.1 molybdenum transport system permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLTSADWAAIWLTIELASLTTLLLLVIGTPIAWWLARTRSRLKGPVGAIVALPLVLPPTVIGFYLLVAMGPNGYVGQLT
QSLGLGTLPFTFAGLVVGSVFYSMPFVVQPLHNAFEAIGRRPLEAAATLRAGPWDRFVSVALPLARPGFVTAGILGFAHT
VGEFGVVLMIGGNIPGKTRVVSVQIFDHVEALEYAQAHWLAGGMVVFSFIILLLLYSRRQRATAAL
>SEQF1086_CAE43363.1 molybdate-binding periplasmic protein precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKIRAIPTLWALAATLLAAPALAGEVQVAVAANFTAPMQAIAKAFEEDTGNRAVASFGATGQFYAQIKNGAPFEVFLAAD
DSTPAKLDAEQETVPGSRFTYATGALALWSARAGYVDDQGAVLKQGDFKHLSIANPKTAPYGLAATQVLAKLGLADKLAP
RIVEGQSISQAYQFVASSNAELGFVALSQIYKDGKLTGGSAWIVPASMHEPIRQDAVILKKGQDNATARAFVEYLKSPRS
AAIIKSFGYQL
>SEQF1086_CAE43364.1 putative hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMPGNAAPRPVHYRHEQVGDVKIFYREAGDPASPAVLLLHGFAASSYMYRDVIAALADGYRVVAPDLPSFGFTESPARDA
YAYTFDNITRTMDRFTEQLKLDRYALMVHDYGAPVGWRLASAHPDRVTALVSQNGNAYEEGLAQGWDAIRRYWASPTAEN
RAALHGFPTPASIKWQYLEGVPDPSLVAPDGYTLEGLQVSRPGNAEIQLDLLLDYASNVQRYPQFQAYFRDRQPPLLAVW
GRNDPYFLPAGAEAWKRDIPAAEVRFYDTGHFALETHGAEIIPAIRAFLDAKVR
>SEQF1086_CAE43365.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATPATHPPHFIANNLALDFINSAFGVGPASHDCLGDDESALAWLEAAGHVPAGLAGPPAGLAELARALREAAARMVRAA
QAGQGGDAALVNQVLEAGRPARKLAWDNGQGGYTLAECPRDHSAASLLEPVAAALADLLAGDALRHVRRCEAHDCTLVFL
DVTKSHRRRWCSMALCGNRMKVAAFRSRRQGAG
>SEQF1086_CAE43366.1 hypothetical protein BP3098 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKQFAVTLLALFGVDAQASVAGPQRLLPILSGEPTRTERH
>SEQF1086_CAE43367.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRTFTSAALLAAALFGFNAFAGSGELDYPPAGAQGGSLTRSQVQHELAIARAAGQLVFGEAQEPAARPAGDAATRAQVQA
ELAQARDASAASEYVETGA
>SEQF1086_CAE43368.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDPPAWAALLEACALGAWMRGSSWAYPAANLAHLLGLVLLVGAMLLLDLRLLGLGRRFALADVSAVLTPLAAGGLLLQLA
SGALLFSADAVPLSGNALMQYKAAGIALGVANALLFRALWGARLAGWDSRPPPWGRLQAALSLLLWLAVATLGRLIAYA
>SEQF1086_CAE43370.1 putative regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDHALDALDRRLLALLRADARLPTATLARQLHVSRGTVQNRMARLERSGIVAGYTVRLRNEDEHGIRAITLIEVRGAATD
AVVAALRRIPEALQVHSTNGRWDLVVELRAADLPAFDRVLRDLRSIDGVANSESNLLLTAHR
>SEQF1086_CAE43371.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43373.1 putative molybdate-binding periplasmic protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEYPRIPGAALLAAALLAGQASAGEVRVAVATKLAEPIRLVAASFEKDTGNKVHYTVAPTSAFLRQIAEGADFDVLLPNN
KAALSELEALDRVVPGTRHTYAQNVLVLWSPFKDYVDDQGQVLRRNQFQRLSVASPNRVYGRPAAQVLDNLGLAKAVEDK
LVERHDLAQSRQFVTAGGADLGIVTLSQVYANGKLQRGSAWLIPQTLYDPIEQQAVILKPGRDNPVARSFLFYLRGPKAG
SILISHGYRYQLFSESL
>SEQF1086_CAE43374.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTVISRYLLGAFGRKARLACASAMLGAALLPAGAASADTYPSKPVRLIVPYTPGGATDMVARIVAQHLGARLGQSVIVEN
KPGAGGNIGSQMVASALPDGYTLLFSTTANAINESLYKDLPFDFKQAFEPVTQLVELPNVVITGPDVPVNSIAQVIALAK
KDPKALTYASAGTGTSTHLATELFKTMAGVNILHVPYKGSAPAMTDLRGGRVQLMFDNIPSALPQVQAGAVRALAVTSSR
RSPVLPDVPTVAEAGVPGYEAVAWHGISVPAKTPAPIVERLSGEIAQVLKQPEVVKQLTAIGATPVGSTPAQFQAHIDKE
LAKWQKVVAESGASLN
>SEQF1086_CAE43375.1 putative gamma-glutamyltranspeptidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSVDAFATGQSATSTYTAHRPVIAANRHAVSSGHYLASHAAFQILESGGNAVDAGVAAGLVLGVVHSDQVNIAGVAPMMI
YLAAEDRVITIDGLGSWPAAASCERFEREFGGVVPEGLLRTVIPAAPGAWITALQRYGTRSFAEVAQYAIRFAREGFIMY
PFLADRLQEAEAKYRRWPSNAAIYLPGGRPPRVGERFVQSDLAASLQYMADQETATAGSRVRKLQAARDAFYQGDIASKI
VAFHQENGGLLTAADLAGYAPTIEAPLSTRYGDMDVYACNFWCQGPALLQALNILKSFDLKEMGHNSTRYIHHVAEALKL
TFADREHYYADPRFIDVPAQTLLSDAYARQRAQLVRADRAWPEMPPCGEIAGYETLRAIHGNISREIDPPLDTSYVCVVD
RYGNAFSATPSDVSSDTIVIPGTGLCPSSRGSQSRADASHPASLAPGKRPRLTPNPAMAIQRGKRILPLGSPGGNSQVQA
MLQVLLNITLFGMDPQTAIEAPRFISYSHPDSFAPHAYYPGRLSVEGRIPAQTEQTLAALGHDMQRWPDWL
>SEQF1086_CAE43376.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKKPVVINAAPSGAFTPKTAVPGQPVAADRSTDVGLAPQEGVTAGIWECQPGLFRRTIMQREFSHFIAGHCYFTPDGGEA
IEIRAGDAVYFPADCHGVWDVRETLRKSYLIID
>SEQF1086_CAE43377.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRASTNQTLQLDRRAALPALARSYWFKQAVPQESAPQGLRGRHSVDIAIVGGGFVGLWTALAAKAMQPTARVIVLERDLC
GGGASGRNGGFAMSWWPKISTLLSMAGRDEALRLALASERAIGELERFCLARGVDAHFVRGGWFWTATTEAQRGAWASTL
QACERVGHQPFTAVAPDELARRTGSPVHLEGIFDTATATVQPALLARGLRQAALDDGIEVYEGSAVRTLHTGAPAVLGLD
EAEVRAGTVVLANNVWAAAIPELAPLITPVNSALVVTEPIGERLQELGWRGNEAITDSQLLVGYYRKTRDGRLVFGKGSG
ALSSGGRIGQVFSRDPGTEALTEADFRRTYPELRDVAIAQAWAGPIDRTYDSLPVFGRLRGADHICYGIGWSGNGVAPSW
VGGQILASLALGRKNEWSESALVGRECRKFPPEPIRFMGGTLVRNAVLRKERDEALGRKPAWLDTRLATLAPAGLEDKS
>SEQF1086_CAE43378.1 probable MerR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHNPSRSNMPEFGITQAAQLTGTNPSTLRLWEQHGLLSPLRSPTGQRIYGEHDLGLISTILRLRKVEGLNISAIKRALAS
TAPAPQDPARPKRSANTQQLGRQFRVARQKHDMSLQEAADATGLPVSFISTFERTGQGAAVASLQRLAACYGTTVTELSA
PPARSADSSAHVVRGGKARQAPSFGAGIQIFQLAETLQSLDCQRWVLQPGAQSDGAYSHEGEEFIHVLHGRFHISVQGLK
TWELVAGDSISFDSRLLHSWSAAGDEPTVLLWVNTPRSF
>SEQF1086_CAE43379.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43382.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE43383.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQHPFISRVAVRNYKSIGYCDVNLRPLTYLVGHNGAGKSNFMDALHFVCDALSYSLDSALNERGGINEVRRRSGGHPTH
FALRVEFVMQSGQAGRYGFVIGALKNGGYEVQREECVVAGIGKGPFFRIEKGKLRDSSETTFPSVTADRLALVAASGLTA
FRPVFDALTAMGFYNLNPKLMRELQKPQDGRLLRPAGENIASVIGHLEKVAPAQMALIQEYLHSVAPMVHGVERKPIGPM
ETLEFRQDMAGSKHPWRFLAQNMSDGTLRALGVLSALLQGNVDYSPTLIGIEEPETALHPAASAALREALVRASETTQVL
VTSHSPDLLDDHSIDADAVLAVVSEAGETKVAPLDEGSRQVMRDHLFSAGELLRMNQLAPDRASLEQQDKAASGDLFGET
ESV
>SEQF1086_CAE43384.1 putative modification methylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATKKTQKPGKSIEQITHTEAKRKNIPTVEHQSVMQHHEQAPVKVAYPRANRQWLEELCALHDAGKASPEFQQRLNRDLD
PQLIWRGKDQQDWSDLVVNAPPLYIQEKVKPKVLIDDLRRQTEERREATAPQQDLLDLFGDFNGLPEGADRTEFYQHEGH
WQNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNAGHITREPEQVKAFRDTWRDGIH
SYLTYLRDRLMVARDLLTESGSIFVQIGDENVHRVRALLDEVFGDDNCVSTIVFAKTSSSTGDFIGPTFDTLLWYARNKK
AVKYRKFLLKKAPGQKGGTGYKSVELPDLSRRQLTKDEIESPSSLPVGSKIYFRDNLTSQSVGREKGEGAASWFGVKYQG
RVYKPSQTVRWKTNELGFDRLLKSNRVEASSGDNLGYIRNLDDYPAYELTDIWADTLGQNQFGGEKIYVVQTSISVVQRC
FLMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALALARARIMGARYPFYLLADSREGQLKEAEVTRSAPSSQ
STYDNIAHGFVYERVPHITLKSIANNAEIDVIWDKAQTVLEPLREALNKTLGKQWQEWEIPREADAKWSEKAKKLHTDWW
QQRIVRQKEIDASIAAKAEFEYLYDKPYEDKKRVRVAGPFTVESLSPHRVLGVDEEDNLIDHVAETQAEYGQDFASLILA
NLRTAGVQQAHKADKIEFTSLEPWPGDLICAEGRYLENGQVKRAGILVGPEFGTVTRADLVDAAREAGDANFDVLIACAF
NYDAPASEFSKLGRINVLKARMNADLHMAEDLKNTGKGNLFVIFGEPDVDVLDTQGRSIRRYDGKRDVIDVPADGQLVVK
INGVDVFHPSTGEVRSDGADGIACWFLDTDYNEESFFVRHAYFLGANDPYKALKITLKAEIDPDAWATLNSDTSRPFPKP
SNGRFAVKVINHLGDEVMKVFKI
>SEQF1086_CAE43385.1 putative restriction endonuclease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDQFFAQPILNSPYEYPARHWELDTSGQPTQEIVSSRRRADFITPIPKPRKKKGEHEQAGLLFDEGKGLSTAQQAYDHT
AIINAVRQEVDAWRKLPPSQWRVTPETARLLEHWRNHKFAGVRPFFCQVEAAETAIWLTEVAPQLGKNGERFLDHLDKAS
NDANPGLLRLALKLATGAGKTTVMAMLIAWQTVNAVRHPQSKRFTRGFLLVAPGLTIKDRLRVLLPNDADSYYASREIVP
RDMLADMDKAKIVITNYHAFKLRERMELSKGGRRLLQGRTGSELDTLETEGQMLQRVMPELMGLKNILAINDEAHHCYRE
KPASDDDFIDDKGNPLTGDDLKAAKEHVKDENEAARLWISGLEAVNRKLGLQQVIDLSATPFFLAGSGYVEGTLFPWTMS
DFSLMDAIECGIVKLPRVPVADNIPGAEMPIYRELWKHIGKKMPKKGRGKNAQLDPLAIPVELQTALEALYGHYRKTYEA
WKQAGINVPPCFIVVCNNTATSKLVFDYISGFERTNDDGSIMRVPGRLELFRNFDEHGEPLARPNTLLIDSEQLESGEAL
DDNFRGMAADEIGRFKREIIERTGDRRQAENLSDSELLREVMNTVGKQGRLGEQIRCVVSVSMLTEGWDANTVTHILGVR
AFGTQLLCEQVIGRALRRQSYELNEQGLFDVEYADVFGIPFDFTAKPVVVTPPKPRETVTVKALRPERDPLEILFPRVQG
YRVELPEEQLEAEFNNDHHLTLTPDMVGATKTHNAGIIGEAVELDIKHLGDVRQSTLLMELTKHLLFQHWRDQGQDAPIA
LFGQLKRIVRQWLDECLECKGGTYPAQLMYRELADTACQRITKGITAKELEKGRQVKAILDPFNPTGSTAHVRFNTSRPG
SERWETLGVENQPKNQVNWVILDSGWEAEFCRVAESHPKVLAYTKNHNLGLEVPYRFGSANRIYIPDFIVQVGDGGGNND
PLNLIVEIKGYRREDAKEKKSTMDTYWIPGVNHLGTHGRWAFAEFGDVYEMQDDFAKEVEAKFNQMIEAAVPAPGNKEN
>SEQF1086_CAE43386.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHSLTPEYLAALCFDGTQVATLRTLGEYQGKQQLYAAQSPEALKGLRQIAVVESTESSNRLEGVVVAPSRLKSLVIRNAT
PKSRSEQEIAGYRDALALIHESAAHMPFSEGVVLQLHTLLYRYMPQAGGRWKATNNDIIERHPDGTSRLRFQPVASHLTP
MAMADLTGRYATALDQHLADPLVLVPLAMLDLLCIHPFPDGNGRMSRLLTLLLLYHFDYAVGRYISLERIFEETKESYYE
TLEASSQGWYQGQHDVKPWLDYFWGALLRAYREFEERVGTIERGRGSKGDRVRAEVLGRSLPFSISEIEEACPGVSRDMV
RLVLRAMKSEGLIESTGKGRGAKWIKQG
>SEQF1086_CAE43387.1 putative integrase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFLPVKPTGGKHWRWKYRLQGKENLFAIGGFPQVSLAEARAAREKARALLKQGIHPAHERRQVKERNLEALEERKHAKES
SFAKVAQAYLAEIKPVFALSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAIHVKGDLSAIFEFAV
VRGLVEANPIPSLRGLLRVPFSESKAAMTREQIQKFYQELRSYRGYPETSLCLRLIALTACRPGEAADAEWDEFDFEDAL
WRRPAAKMKARRDHVSPLSAQAIAVLKDLQCITGGGRYLFPHRSGKGFTTPNRLTYAMRDMNLGRGTTPHCWRTTFSTWA
NENGYRPDAIERQLAHVESNKVRATYNKALLLDQRRTLLQDWAEYLKAAEDSGAA
>SEQF1086_CAE43388.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALQCGIVGLPNVGKSTLFNALTRAGIAAENYPFCTIEPNVGVVEVPDPRLDKLAEIVKPERILPATVEFVDIAGLVAGA
SQGEGLGNQFLSHIRETNAIVNVVRCFEDPNVVHVAGKVDPIADIEVIETELALADLQTAEKALHRHSKTARSGDKDAQR
LVTVLEKCIAQLNQAKPVRGLDLSDEEQTLIAQLCFITAKPAMYVGNVSDDGFTDNPLLERLAEFAKSRNAPMVAICAAI
ESEIVDLPEEDRQAFLSDMGMEEPGLNRLIRGAFTLLGLQTYFTAGVKEVRAWTIPIGATAPQAAGVIHTDFERGFIRAQ
TIAYEDFIACKGEQGAKEAGKMRAEGKEYVVKDGDVMNFLFNV
>SEQF1086_CAE43389.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDVTTARQGAARATTFRQDLADCWRFLCRPTLRGRLPGRRADSGWASDWRPGVSASRLLAWAAVLWALNLFALGPIAVT
VAGAGGAMHRLDPANIPWLTAILWAPLVEELLFRYGLRRPAQALWFCPMVLPAILWGAQGWTLALVAVAVWLAWLSLRRG
RASLAGWDTSWRRYYSYRFGLVFHLVALTFAAVHLNNFSLSQTPVWLLPLLVLPQWATGLVLGWMRVRRGIGAAIALHAL
FNGGPVLMIWLLMTLMPAGA
>SEQF1086_CAE43390.1 peptidyl-tRNA hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDPIRLIVGLGNPGPDYETTRHNAGFWLADHLADDLRTAFALEKGFFGMLAKARHAGENVVLLKPITYMNRSGQSVGAV
ACFYKLAPEQVLVLHDELDLLPGQVKIKQGGGHAGHNGLKDIQAALGSPNFWRLRIGIGHPRSLGLAQQVADFVLHPPCR
EEQQQIDTVIDRCRAVVPAMLAGDFALATRELHGANGT
>SEQF1086_CAE43391.1 50S ribosomal protein L25 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEFSMKFNATARSVQGSSASRRLRRAGRVPAIVYGGTAAPLNIELDHNEIYHALRKEEFHALILNMVIEGGKTEEVLLRS
VQWHAYKPQVMHVDFQRVEANQALHTKVPLHFINAEVSPAVKLSGAIISHVLTELDITCLPALLPQFIEVNLGDLLGGGS
IHLADIKLPKGVTFNAHGGDTNPLIAAAVVKGGGAADEGDAAAEQPAA
>SEQF1086_CAE43392.1 ribose-phosphate pyrophosphokinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MANDSFMIFTGTANTRLAVDVVNHLDMSLGKMTVGRYSDGEVMVEINENVRGKDVFVLQPTCAPTNDNLMEIMVMVDALR
RASAGRITAAIPYFGYARQDRRPRSARVAISAKVVANMLQVAGVDRVLTMDLHADQIQGFFDIPVDNIYAGPILLGDIWR
RNFSNLVVVSPDIGGVVRARALAKQLEADLAIIDKRRPRANVSEVMNIIGEVDGRTCIIMDDMVDTAGTLCKAAQALKDR
GAGAVYAYCTHPVLSGGAIERIETSSLDELVVTDTIPLSEQAQACGKIRQLSCAALLGETILRISNAESVSSLFAD
>SEQF1086_CAE43393.1 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLYDVPAPAKLNLFLHVVGRRADGYHLLQTAFRFIDLADTLHFEARADGAIGRAYELPGVAESDDLVMRAARSLQRATG
TRQGAQIGLHKRIPQGGGLGGGSSDAATTLIALNRLWGTGLSRSQLMQLALPLGADVPVFVFGQSAFAQGVGEDLTAVAL
SPAAYLVVQPDAGVPTAVIFSDPDLTRDCASVTIADFLALPTSCFGRNDLEPVVLRRYPEVSGAVRWLFEHGLRVRMSGS
GACLFAEFPTLPEAVLAQEEITATMRVAGKTTSHTHPGFRLVQASTGLTEHPLRNWIAS
>SEQF1086_CAE43394.1 putative outer membrane lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSACPAPRSPVRWLHAFTLFLLLAVLAGCVSVPKPMAGAGEDVFSRVGRFAITVTESDGKQQAVQGGFAWRDDGGSYLLD
LTNPLGSTEARVEGRPGMAVLTRANGERLAAEHPDALAEDALGSPVPVTGLRDWLRGRLMAGAAPDGLERDAQGRPTAFE
QDGWNARLSRYDAQGPQLLVLQRQEPGRRILVRLVITQP
>SEQF1086_CAE43395.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQCKIINCVYEDCAINRTGRVKLSLKHINFGVAALALALAGLQSLPAQAAEVRPRDATGPRLIQPSKQPETEVIRLRPG
QLPYVSLTADIFYRIVGAELAAQRGMYGTAAATLVTLARETGDPRLARRGLEFQLAGGNLPGALDAARAWSSLAPNDIEA
SSTELALAAANGETSGLATALRKRIDTARDKPAAIVQAMGVLSRLNDRRLALRILDESLSDSARKLPAAHLALADVAQAA
GDYPRAANEAYAALAADPKSEAAAQRVLEYGAKVDATRAQHQARAFINRNPDARKLRLMLAGQIADGGDYDGALAELQAM
SRRSPEDFDLMFMQAQLAYKAGRLDQARGYLQQYLDVQNQRQMATAPGATDAGAAAADAHVLLSRIAEDQGRYDEAIREL
GRIDDPAMRYSAHMRQATLRARQGRIDGALAMVDRADPQDDEERTLGVLTKAQILRDADQVDRAVAILVAADKAMPDTVE
IKYELAMLYERQGRIDQLERLLREVIALDPDHAHAYNALGYTLADRNQRLPEALDLITQALELSPEDPFILDSMGWVKFR
MGEPSAAIEYLKRAYALRPEADIAAHLAEVLWVQGERDSATELLRTAYAKDPKNRALLDTMRRLEVRP
>SEQF1086_CAE43396.1 formamidopyrimidine-DNA glycosylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPELPEVETTRRGIDTVITGRTLRRLVVREARMRWPIPPALPDLLAGRTVLECGRRGKYLLLRFDHGVQIVHLGMSGSLR
RVPEQEAPRKHDHVDWVFDHAVLRLHDPRRFGAVLWHPDEAGPIAAHPLLARLGIEPFDPRFDGRWLHAYFRGRRVAIKQ
ALLAGDAVVGVGNIYASESLFRAGIDPRTAAQRVSAARCDRLAAAIRATLSDALDSGGSTLRDYVGASGEPGAYFAIHAA
VYERAGLPCRVCGTPIRRLVQGQRATYFCPSCQKR
>SEQF1086_CAE43397.1 putative cyclase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKQFASHADLEDKVVSFEKLSDNAYAYTAEGDPNTGIIVGDDAVMVVDTQATPVMAQDVIRRVREVTDKPIKYILLSHY
HAVRVFGASAYGAQEILASRDTYDLIAERGEQDKASEIGRFPRLFRNVESIPPGLVWPTMTFKGEMTVDLGNLEVKLLQV
GRGHTKGDTIAWLPEQKILFAGDLVEYQSTPYCGDCYFREWPATLDALAGFEAEKMVPGRGPALKSATEVRQGLAGTRAF
LTDLYAAVNRGVADGKDLKTIYREVYDFMKPRYSQWVIFDHCMPFNVSRAYDEATGHYDPRIWTDKRDIEMWQQLEG
>SEQF1086_CAE43398.1 putative oxygenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGDIDYQAIEFAYTKCADQQRDTPARHCVIVVGAGPVGLTTALDLARQGLRVVVLDDDYRLSTGSRAICFAKRTLEIWDR
LGVGQRMVDKGVSWNVGKVFFRDQEVWRFDLLPEPGHRRPAFINLQQYYAEGYLHELASAQPGIELRWKSKVVGVAQQAD
GVQVTVDTPDGAYALHADWLVACDGARSPVRKLLDLETHGRVFKDRFLIADVKMAADYPAERWFWFDPPFHPNQSVLLHM
QPDNVWRIDFQLGWNADPVEAVKPENVLPRIRALLGPDADFELEWVSVYTFACERMDHFRHGRVVFAGDSAHRVSPFGAR
GANSGVQDAENLAWKLKLVLAGHAPESLIDSYAAEREYAADENILNSSRSTDFITPKSEVSRTFRNAVLNLARQHPFART
LVNSGRLSVPAAYADSPLNTPDSDPYAGTMRPGAVALDAPVRADAQPGWWLSQLDGGFALALFCGAETPRADMLDALRAL
QQDEVPVQPILVCDAGAAPAAAPAGVRVVEDSEGWLARRYDARPGTCYLIRPDQHIAARFRAFDAQAVRRALARAIGRA
>SEQF1086_CAE43399.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPLITTPNLAGPDNFYEALIDTHRDLSDEQSRELNAALILLLANHIGDMAVLRAALEHARQSVVAPPAP
>SEQF1086_CAE43400.1 putative LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAELRNIDLNLLVIFQRLLQERSISAVARQLDLSQPAVSNALRRLRAACGDDLFVRTAQGMQPTPHAERLGGPVGEALAL
LSHALDATQDFEPRASTRRFRIAMSDVGEIHFMPRLMDQCARHAPGVRIDSLRLQGADLQREMDAGRVDLAIGAFADLGG
AVMQRMLFRQGYATLYRQGHPSAHEGMSLKAFRAAHHLVVSHATPYGQVNQSLERAGVTLGEHFSVPHFAAVPYIVSTTD
LLATVPQKLAASAAPHFGLGLLTPPLRMPTLQTNLYWHRRFQRDSGSQWLRALIVQAFADAP
>SEQF1086_CAE43401.1 homogentisate 1,2-dioxygenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLHYQTGFGNACATEALPGALPAGRNSPQICPYGLYAEQLSGTAFTAPRAENRRSWLYRIRPGVQHLPFAPFAGAQRWL
SDFGRQPVTPNQLRWSPLPMPDAPTDFIDGMHTWGGNGGPEEQSGVGIHLYAANRSMQGRFFYNADGEMLIVPQQGRLRL
ATELGLIDIEPYEIAVVPRGVRLRVELLDDVARGYVLENFGTAMRLPELGPIGSNCLANARDFQIPVAWYEDVEGDFELI
AKFTGGFWRAPITHSPLNVVAWHGTHAPYKYDLRNFNTVGSISYDHPDPSIFTVLTSPSDTPGTANMDFAIFPPRILAME
NTFRPPWFHRNIASEFMGLIHGVYDAKAEGFAPGGASLHNCMSGHGPDADTFEKASHADTSQAHYIRDTMAFMFETRRVI
RPTAQALASPQRQDDYYQCWQGLQKHFDPEQA
>SEQF1086_CAE43402.1 fumarylacetoacetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKLNETHDPALQSWVASANAADTSFPIQNLPFAAFRRKGTQDPFRPGVAIGDAIVDLAALAAQAPFDGAAAAALAACQG
ERLNALMALDQAHWSALRLALSRALRAGSALQARIEPLLVAQAEAEYTTPAHIGDYTDFYISVHHATAVGKQFRPDNPLL
PNYKWVPIGYHGRASSIGVDQRFARPVGQTRPAAEGEAPQFGPCQRLDYELELGIFVGRGNAQGERIALGEAESHVFGLC
ILNDWSARDIQAWEYQPLGPFLAKNFASTISPWIVTLEALEPFRAAWTRDAADPQPLPYLESAENRAHGAFDVQMEVLIS
TEQSRAKHAQPALLSRSNFRDAYWNIAQLVAHHTVNGCNLQPGDMMGTGTLSGPQASEAGSLLELTNGGKQPLDLPWGEQ
RTFLQDGDQIIMRAECSKPGYPRIGFGDCVGTVLAAK
>SEQF1086_CAE43403.1 putative sulfatase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRVFFCNEADEALALPPPTRNPVRRLTIRFAIAILVLLTLSRLGLSAWQWERVQAAGGLGPIMLGGLRMDLRLLALVLAL
PAVLAPWFGHRAWAASATAWWYRVWWMLFVLLEVSTPQFIAEYDTRPNRLYFEYLVHPREVASMLWEGYKGVLLASFVVL
VLAAWLAVRLFPTGRQDGFMKWWKRPFVTLAVLAVVVLAARGTLQHRPINASMVAFSSDAMVNTLPLNSLGNVLDAAYRM
QDERSSAALYPPMKTEEMNRIVRAAAGLEDPPLDARYPSLHKQTATVRRDKPLNLVIILQESLGAQYVGSLGGRDLTPQL
DRLAKDGWMFNRAYATGTRSVRGLEAVTAGFLPTVAEAVLKLPRSQTGFFTLADLLGRHGFHSRFIYGGEAHFDNMRGFF
LGNGFNEVIDRQSFVDPVFVGSWGASDEDMFNQLDRLLRADDGKSTFTLAFSVSNHSPWEYPAGRIEPVGDPASVDNTVR
YADWAMGQFFDKARKAPYWDNTVFLVIADHDSRVYGANLVPVRHFQIPALILGGTVPPRSDDRIVSQIDMGPTLLSLIGL
DNVNPMLGSDLTQRDPNRAIMQYGDNFGYLKGDSLLVIEPGKDPREYRYTAAASMRDEKYVPIDLDPALRDEALAFALWP
SWAYREERYKLPK
>SEQF1086_CAE43404.1 putative two-component system sensor protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSARPVSGNGSGSLTQRVVWALTGSVALFVTALVLLSYLTFDKMEDDLVNDILSTETDRLIQHVAADDHFRPDRGARELG
GAMRAWLVRAGAAQSDLPPPLHGLGVGMHLLEPGAETWHVMVADVEDARIYVLYDATDNEARVHDFGLFVLGVGAICIVA
AYGISRRVAGVAVGPLVELTRRLANWAPGAPDLAVTRDDEAGRLIEAFNRVQNQVDRSIAREREFSVNVSHEVRTPLAAI
RSDSEMMLLAAGLDEGQRTRLVRIVANVDNVSTALESARAMARDEPRAPERVDLAACMDDAWRGLEVNAEAAGLAFANRI
PAGSAHVLDRYAMLTVLRNLVRNAIEHAAPATLTAALRPDGALELRDDGRGIAAEELPFVFQRFYSGRLRDSADNGSNEL
PRGLGLAIAKRVCDMQGWQLSVDSERDGPARGTRFVLRFT
>SEQF1086_CAE43405.1 putative two-component system response regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAAPANRHFRVLIVEDDLTIAANLYDYLQVRGFVPDAAYDGRSALALLDEHPFDAMVLDVGLPGMDGHAVLHALRVERR
AALPVLMLTARDGLDDKLAGFAHGADDYLTKPFALAEVEARLLALIQRSRGAVVDSLRSFGPLQFDSATREVAVHGKPVH
LTRKCGMIVEVLLRDPGRVVSREQLENALWGDDPPSSDALRSQVHLLRRALADAGFDGIETVHGTGWRLALPAGGA
>SEQF1086_CAE43406.1 putative oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLPRELQALLGPSHVLTGDDAEPFLQDWRRRYRGRALAVARPGSAEEVAAVVRLCQAHGAPLVPQGGNTGLCGGATPDD
SGSAVVLSTTRLNRVRAIDTDNDTITVEAGCVLQAVQQAAEQAGRLFPLSLAAEGSCTIGGNLATNAGGTQVLRYGNARE
LTLGLEVVTAEGEIWNGLRGLRKDNTGYDLRDLYVGSEGTLGIITAATLKLFPLPVATCTALLALDSIDAAVEVLSRARG
GFGASLTGFELMAADCLQAVTRLFPQQRLPFDGASADSPWFALLELSDSESEAHARARFEAVVGAAIEDGLVADAAIAEN
LAQSQALWHLRESIPLAEAELGKSIKHDVSIPISAIAAFVHQTNGLLQGRFPGVRNVIFGHLGDGNLHYNVARGPGQTEA
DLLGLQSQVYDVVHDSVQAFAGSISAEHGVGQLKRDELPRYKSAVELALMKRLKVALDPRGLLNPGKVLQA
>SEQF1086_CAE43407.1 hypothetical protein BP3140 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAPGRVDLTAGGERRLDIPVHAGIDGSVEAGRAWERCVWRAARVLIAECPAPRLSARLEATLRGVAVRIARDRGWRGIGT
VVFSLDVGTGMFRMIEARLCGLQQGGPAADAASGGHALEVRISACADSGRRGAHLLTYGATRGEALRRAYQALAKLPGLA
QADRAFLMDRIASPAFCSGLTGSQLDRIAS
>SEQF1086_CAE43408.1 phosphoglucomutase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAHPFPASVYKAYDIRGSVPDQLDPVFARALGRALAASARAQGIGALVVGRDGRLSSPDLAGALQEGIMEGGVDTLDIGQ
VPTPLVYFAAHIQGTGSGVAVTGSHNPPQYNGFKMMMGGQALYGPAVQALRPAMLAPAAAPGTWGERRQLDVVPAYIERI
VSDVKLARPMKIAVDCGNGVAGALAPQLFRALGCEVDELYCEVDGTFPNHHPDPAEPRNLQDLIAHVTSTDCELGLAFDG
DGDRLGVVTKSGQIIWPDRQLILFARDVLARCPGATIIYDVKCSQHVGVAIEQSGGVPLMWQTGHSLVKAKLAETGAPLA
GEMSGHIFFKERWYGFDDGLYTGARLLEIVSRETDASRPLEALPQALSTPELKLEMAEGEPHALIAALQQQGEFASASRL
VTIDGVRAEYPDGFGLARASNTTPVVVLRFEAETEPGLARIQQEFRQQLLRLAPQAKLPF
>SEQF1086_CAE43409.1 glucose-6-phosphate isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPTPLPSSSAWLAFADAARHSSRRGARLRVIEAAGLRVDLTAQAHSDDLDSAAEDLLAQQDFDNARAQLFDGGPANWTEH
RPAWHTALRAARPPTPVAGAILGERDRLRRFVQDADMRGAYRHVLHLGIGGSDWGPRMVTRALRHNGLKREVRFASNVDS
HAVADALHHLDPHDTLIIVASKSFTTTEPLANAEVAMNWLRNAGVADPVRQVVAITANVDAALDFGISPQHIFRFWDWVG
GRYSLWSAIGLPVALALGCDALDELLAGAAAMDQHFLHTPMRRNAPLQMALAGVANRSVLGYGSLAITPYDSRLTHLVPW
AQQLEMESLGKVAGHDGSPAGVPTGPVVWGMTGTDCQHTFFQWLHQDTAGAPVDFIVCEQADHPYDHFHKLLIANCLAQR
AALLRGKPFDEALKEARLVESDPQQAEILAHHRVHPGGRPSTLIMLPRLSAHALGALLAMYEHKVFAQGVLWGINPFDQW
GVEYGKALARNIIRELENPSSEVNQQDPSTRYWIDALRKQP
>SEQF1086_CAE43410.1 putative glycosyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTSPRRLLFVVNNPAFFLSHRLPLAEAARADGYEVHVATMDGPSVPDIVARGFAHHVIPMTRSGKQPLQELRSVWALVRL
FRRLRPGLVHLVTIKPVLYGGIAARLAGVPAMVAAISGLGFVFVAGGLKARLLRAAVGRLYRLALGHRNSRIVFQNTADR
DVLARLGAVRAEQVVMIRGSGVDLGQYRVVPEPAAPVTALMAARLLRDKGVREFVEAARLLRQRGLSVRMQLAGGVDPGN
PASITPEQAAQWQDEGCVEVLGERKDIAALYGAAHMAVLPSYREGLPKSLLEAAACGRAVVTTDVPGCRDAIDPDVTGLL
VPPRDAPALADAIARLAEDASLRQRMGAAGRALAEREFGIEDVCRRHLAIYRALAR
>SEQF1086_CAE43411.1 putative glycosyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRILRVMHVITGLGQGGAESVLFRLATWPDQRVRHSVISLTDEGVYGTRLRAAGVPVHALGMPRGRVTLGGLLALRALL
RRERPDAVQTWMYHADLIGGVAARLAGIRAVAWGIRNSGEHLDRSSRSARLVLKLCARLSARLPAAIVCAAQDAATRHRQ
HGYDGARMVVIPNGYDLSRYAPDAQARERMRSLWGVAPGTPLVGCVARWDPLKDHANLLAALGGLVREGRDRGLQCALVG
RGMSPGNAGLAALIDAEGLRGRVLLAGPSDDVPAVMNALDLHVLSSCAEGFPNVVAEAMACGTPCVATDVGDAAYIVGDT
GGVAPAQQPAALAAAIEAALAGIAARGRDAAGAAGRQRVLAEFDLRRMVESYEAVWRRISGERA
>SEQF1086_CAE43412.1 putative glycosyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKILLLVSSMHAGGAERVAATLANGWAARGDQITLMPTYSSKGTCFYPLSDDVELLWLADRAGTRSGGVVAAWQRLRALR
AVVRERAPDVVVSFLTNVNVAAILATRGLKTPLIVCERTNPVVDTSIGRIWRVLRRVLYPLADMVTVQADATVEPFARQV
PGLKQLCVIPNPLPPELFDATPAAGSGAAPAARKRLMAMGRMVPDKRFDLLIDAYAGLADEFPDWDLWIWGEGPRRDDLQ
AQVAARGLATRIHMPGRTAAPWDELAKADAFVLSSAVEGFPNVLLEAMSLGLPCAAFDCPSGPAEMTRGGRDALLVPAGQ
RDALRDALGRLMRDPELRRDLGRRAAQSVRQRYALPAVLAQWDALFERVRGGA
>SEQF1086_CAE43413.1 putative asparagine synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MCGIVGIWGPLRDKANVLAESCRRIRHRGPDSNGYWEDAEADLALAHVRLAILDLTEAGHQPMVSACGRYVIVLNGEIYN
HMELRERLQQDGLAPAWRGHSDTETVLACFAGWGIEQTLQAAVGMFAIVLWDRAERKLALMRDRMGEKPLYYGYSQANLL
FGSELKAFMPVPGFGRELDRNALASFMRHNYIPAPQSIYAGIRKLPPGAWVEIDAAQMRRGELPEPQVYWSARRAADQGL
GDRRRFESDAQAIDALEQVVSQAVRGQMLSDVSLGAFLSGGIDSSTVVALMQAQSAQPVRTFAIGFHEKGYNEAEHAKAV
AAHLGTEHTELYVTAEDGLAVVPSLADMYDEPFADSSQIPTSLVTRMARQHVTVALSGDGGDELFGGYSRYFRVDNWWRK
CAAMPGPLRHLAGAALRGSAALPGAGAWRGKVGKLGELLGADTRGEFYRLFVSYWADPGRVVIGGTEPLSPFEQPMEGST
FDAMMKLDTVTYLPDDILVKVDRAAMAVSLETRVPLIDHRVYEFAWQLPFEYKVRGGTGKWLLRQLLYRHVPQAMVDRPK
RGFAVPLAAWLRGPLRDWAEALLDPARLRQEGWFEPEPILRKWREHLSGHRNWDSHLWGVLMMQAWLDRYRAGAGDEAGR
R
>SEQF1086_CAE43414.1 putative glycosyltranferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGPAERPLRVLIFIHSLHGGGAERVAADLSAHWARDGRAVMLVTQTDASGDVYPLHPQVLRRTLDTAGEGGGWRGVLAN
LRRIRALRALIKDFQPDIVLGMMTTASVLAVLAARGLGCRVVATEHTHPPSQALSGMWLRLRRWTYPRAARVVALTRGTA
DWLRTHVPGSRLAVIPNPVHWPLPRTEPVLVPPADGRPRLLAVGRLHPDKGFDVLIDAYARIAPRYPDWDLVILGEGEEC
AALQRRVDEAGLAQRVALPGRAGNVGDWYACAALYVLTSRFEGLSNTLLESMASGLMPVSFDCDTGPREIVRPGVDGVLV
RPAGDAGAMAQALAAAIDDEPGRRAMAARAIDVRERFSARHVLDLWQQLFDDALSQAK
>SEQF1086_CAE43415.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKAIRRKLDAIHPDHQRIFKGAFRVAVFLILGKAAGAIKEMAVAYRYGVSDAVDAYQFTMTMATWLPVTIVGALSVVLIP
VLVRLRRAGGHERDRFVRELQGWSLAAGLTLALLTWMAWPHVLDWLGGGLSGTVDGMTHELLLAFAPVAALLLMAGISAA
RLRSHERHVNTLLDSVPAVTTLAWVMLAASADSVGPLLWGTLVGYAIQAAWLAWLAARADGGFWGWPAFTLRSPHWPELA
AAAGVMLVGQVAMSFVGPLDQYAAANLGSNANATLGYASRLLSLVLGIGAVSVGRAALPVLADVQSRGDGARARAMALKW
SALMVGAGAAAVVVGWLLAPWGVALLFERGAFTAENTQAVAQVLRWGLLQLPFYFGVLILVQLLASQNRYRIMALIAVAN
FLLKAVLNTVLAPRMGTAGIMLATSLMYLLSFACYTVVALRPAPGADGGDDDREKR
>SEQF1086_CAE43416.1 UDP-N-acetylglucosamine C4 epimerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTNRFETTCAQLRAQPQKWLVTGCAGFIGSNLLETLLGLDQAVVGLDNFATGHQHNLDEVRAAVTPEQWARFTFIEGDIR
DLAACQRAVQGVDRVLHQAALGSVPRSLKDPITTNEVNIGGFLNMLVAARDAQVQAFVYAASSSTYGDHPDLPKVEERIG
NPLSPYAVTKYVNELYADVFARSYGFSSVGLRYFNVFGKRQDPDGAYAAVIPKWTAAMIKGEDVVINGDGQTSRDFCFVE
NAVQANLLAAMAAPEGANQVYNVAYNARTTLTELFEHLRRTLAGQGVSYEKAPVYAEFRAGDVRHSQADIGKAGKLLGYE
PAYDILRGLEAAMPWYTQFLR
>SEQF1086_CAE43417.1 polysaccharide biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRIDDVKLAVVGLGYVGLPLAVEFGKKRPVIGFDINERRIAALKAGHDHTLEVEDDELARAAQLSYTAEREELGKANVFI
VTVPTPIDEYKQPDLTPLVKASETIGAVLKRGDIVIYESTVYPGATEEDCVPVLERVSGLKFNQDFYAGYSPERINPGDK
AHRVNTIKKVTSGSTPEVAELVDQLYNEIITAGTHKASSIRVAEAAKVIENTQRDVNIALINELALIFNKMGIDTEAVLQ
AAGTKWNFLPFRPGLVGGHCIGVDPYYLTHKAQAIGYHPEIILAGRRLNDSMGGYVVSQLVKAMAKRRIHVEGARVLLMG
LTFKENCPDLRNTRVVDIVRELGEYHVDVDVYDPWVDPAEAEHEYGITPVAKPAAGAYDAIILAVSHHQFVEMGAEAIRK
FGKAEHILYDLKYVLAPEQADLRL
>SEQF1086_CAE43418.1 probable glycosyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTWLYICVVAFMVGGLIVASERWHGAFTGDSDLNKPQASHTRATPRVGGLAVLAGSLAGLLVLGPSNMTLTWLWPALFVA
ALPVFVAGLLEDITKDIGASKRLLAAFASAAIAWWLLGGVSRVGIAPVDWVLSFWPVSLIFTMFAVGGCTHALNIVDGMN
GLAGMIATLMAVSISLVALQVGDMPIFMIAAALASATLGFLVWNFPFGRVFLGDGGAYFLGFMLAELAVLLVVRNPSVSP
FYALAVLFYPVFETGFSIWRRRFKRGVPVDQPDALHLHQLVFRRLVRVTFSRGRRHAVPALCNALASPYMWVLALIGLVP
ATIWWDNAWFLCASLVVFAAVYTWLYMRLVSWRRPGWLLLPSVIRTH
>SEQF1086_CAE43419.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTSSSASALGRRAGPLDGLIGEIDRALRVLSGAATAARPYPAQAPEAPDALSEREKRHAAGLMRVNHVGEVCAQALYRG
QAAACREPAARALLREAAAEEVDHLAWCHERLRELGSRPSLLNPFWYTGSFALGVLASYAGVPRNLGFMAETERQVEAHL
DGHLRTLPVQDQRSRDIVQKMKEDEAQHRASAERAGGVPLPAPVRGAMRAMSKVMTSTAYWL
>SEQF1086_CAE43420.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQMECTIDWGGPAGMLFTASTGSGHVAVMDGAVDGGGHDLAPRPMEMLLAGTGGCTAYDVVLILKRGRHAVTGCSVKLQA
ERADADPKVFTRIHFAFTVTGSKLPRAAVERAVQLSHEKYCSASAMLEKTAELSFSVDIVDTQAA
>SEQF1086_CAE43421.1 putative thymidylate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKQYLDLVQSILDQGAWQENRTGVRTLSLPGAALRFDLQQGFPAVTTKKLAFKSAIGEMVGFLRATRSAAQFRALGCKVW
DQNANENEQWLANPYREGPDDLGPVYGVQWRHWPAYKLLPSSAGGQVADALARGYRQVAEVDENGAPHVLLYKAVDQLRQ
CLDTIRQSPGDRRILFHGWNWAQIEEMALPPCHLLYQFLPNAGTREISLCLYIRSNDVGLGTPFNLTEGAALLHLVGRLT
GYKPRWFSYFIGDAHVYENHLPMLREQLAREPYPAPQLVLSDRIPDFAVTGKYEPQWLEQVEPGDFTLSGYQHHAPLTAP
MAV
>SEQF1086_CAE43422.1 dihydrofolate reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPMSATPLLSLVVAYSTNRVIGRDNALPWKLPGDLAHFKRTTLGHPIIMGRNTWESLGRPLPGRTNIVITRNPAYDAAGA
VVVGSLAAAIQACGDAAVACVIGGAQIYAQALPLAQRVVATEVHAEIEGDAFFPPLPAGQWRETQRAAQPAENGLRYDFV
EYERVAG
>SEQF1086_CAE43423.1 probable GntR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIDFQPVRGRAQAPSLVEQVVQAFSSAIARQVLRPGMPVPSVREFARQHGISTFTVASAYSRLAAQGWLVARPGSGYRAA
SPQAAAPRAGTPGQWSPPRLNDSWLLSDIYADHSIPIKSGCGWLPPEWLHEEGLHQALRHLGRVPALRIAGYGHPYGYAP
LRETIAAGLGAAGMPAEADQVLLTQGVTHGLDLVMRTLLRPGDTVLVEQPCYANLLQLLRLVGMRVVSVPRGVDGIDCEA
LDAAALAHRPRALFVNTVLQNPSGASLGMANAFRVLQAAERHGLWIVEDDISRELMPAIAPLLAALDGAQRVVYLSGYSK
AISPSVRVGYIVAHRDLVRDLARTKMAAGLTSPEIMERVVHQVIREGRYRAHVLRTRERLGQAHAQVVQAMDEHGLQLCA
RPQAGLFLWARPGGAWRERGANALAELALKDGIWLAPGSYFDAADADIPWLRFNVAYSDAAALWRFLRGAGASAQPATRS
YSTKS
>SEQF1086_CAE43424.1 omega-amino acid--pyruvate aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAPASPPDLSHLWMPFTANRQFKSQPRLLARAEGMYYTSTDGRQILDGTAGLWCVNAGHCRPEIVQAIASQAGEMDYAP
GFQLGHPLAFEAATAVASFMPAGIDRVFFTNSGSESVDTALKIALAYHRARGDAQRTRLVGRERGYHGVGFGGISVGGIS
ANLKTFSGALLPAVDHLPHTHSLKHNAFSKGQPAWGEHLADELERIVALHDASTIAAVIVEPMAGSTGVLVPPKGYLQRL
REITARHGILLIFDEVITAYGRLGSPTAAEHFGVTPDIITMAKGVSNAAVPAGAVAVKREVHDAIVNGVQGGIEFFHGYT
YSAHPLAAAAILATLGIYRRDDLFGRARDLSPAFEKAAHALQGAPHVIDVRNIGLVAGIELASRPDAPGARAAEAFRKCF
DSGLMVRYTGDILAVSPPLIIDEAQIGELFEGIGKVLKEIA
>SEQF1086_CAE43426.1 putative extracellular solute-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLKSVRIAALAGAMLLAAQGAGAETVIKAVMHSPLRLTDPHATTAYITTWHGYMIYDTLLATDADNKIQPQMLEKWEVSP
DGKTYTMTLRPGQKWHDGKPVTAEDCVASIKRWAGGDGMGRTLMKFTDRIEAVDDQTLRIVMKEPTDLALRALSKPTGTA
AFMMPKRIADIPIGQPITDMTGSGPFKVAEFKPGVKTVYVKNADYVPRQEPASGLAGGKAVHIDRVEWNVMPDALTTANA
LLGGKIDFVEQFPYDLLPMVEGNPELKEEALSPVGYFTMYRFNFKYPPFDNKKIRQAAMYAIGQEDVMKALVGNPKYWQT
CASLWGCGTPFETDIGKDMVVPSNIEKARALLKEAGYDNTPILVMHATDVGTLSAQPVVMAQALRKAGFNVNLAAMDWQS
VATRRASKAAPAQGGWNIHNTNWYATDIMDPVRSAPAAANGDNAWFGWPDIPEIEALRTRFALSSDPAEQKKLAEEAQRI
GIDEGLYVPLGQMSVPTVYTTKLSGLVHAPVFAFWNVKKAP
>SEQF1086_CAE43427.1 putative ABC transporter permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLVFIARRLLATIPVLIMVAVVVFAILRASPGDPAIIMAGDAATPERIAQIRQVMGLDQPLVKQFFIWTGRLVRGDMGTS
LMSGVPVTQLIGQRLEPSLSLAMITLVFTLAVAIPLGILAAWRRGRLLDRAVMGFSVLGFSVPVFVTSYVLIWAFAIKLG
WFNVQGYTPLAQGFWPYLHRLVLPSLALSTVYVALIARITRTSIIEVMGEDFIRTARAKGLGETGVLLGHALRNAAVPIA
TVIGVGVALLISGVVVTESVFNIPGLGRLVVEAVMARDYPVIQGLTLFFAFVYVFINLVVDCAYTVFDPRIRY
>SEQF1086_CAE43428.1 putative peptide ABC transporter permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPTHSDAVADGALPENGPPQAGAWRRVRREFSGAPVLAALAVLALVVGAALLAPWLGTVDPTAIDPGARLKPPFGDYLFG
TDAFGRDIWSRVVYGARVSLVAGLGAALVSVTLGLVIGVIAGWFRTLDGLIIRTMDAVMAIPGILLAIALVSVTGASLAT
VLVAITIPEIPRVVRLVRGQILSVRGEPYVEAALALGTPLPLLLWRHLVPSTVAPLTVQGTYVFASAMLTEAILSFLGAG
IPPEIASWGNIMSEGRMYFRMLPGLILFPGLFLSLTVLSVNILGDALDPKMTRRT
>SEQF1086_CAE43430.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRWLLAMIKHETNTFSPVPTPLERFFRGSPEILAGERAIRAYENTDSGLGGYIEVARREGAEIVVPVAAESWPSAPTDRA
TYERLCGLVLDEARRGGFDVILLDLHGAMVAEGVEDAEGDLLRRLRDIAPAIPVGVTLDMHANIYDDIVRHATVISGFHT
YPHVDIRAAGLRAANAIARTLRGEIKPVMSWANKPMLPHIMRQGTHAEPNKSLQARCKALESEGVIAASVFVGFPHADIR
EAGLSAVVCTDANLAQAEQYRDELLETAWRGRADWVFHAEPLAPTIARAKAIENGPVVLLDHYDNTGSGGTMDTTAVLAE
ILDQGLENVAFYAICDPQAAQQAAAAGVGATVTLPLGGKVAMPALRQASPLLHLTARVKLLFDGVYLNRGPMYRGVRNDT
GLTVVLDTGKVEIVVVSRHQEPFDINCLLSAGIDPLQKRYVALKSRVHWRAGFADMAAHVIECTGVGVTTSDYGQVEFRH
VRRPVYPLDAI
>SEQF1086_CAE43431.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHT
>SEQF1086_CAE43433.1 urease accessory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHDISSLTTRTKALPPLRVGVGGPVGSGKTTLLEMVCKAMYPQFDLIAITNDIYTKEDQRLLTLSGALPPERILGVETGG
CPHTAIREDASINLIAIDQMLEQFPDADIVFVESGGDNLAATFSPELSDLTLYIIDVASGEKIPRKGGPGITKSDLFIIN
KTDLAPYVGADLAVMEADTRRMRGDKPFVMCNLKTGDGLDQVIAFLKTEGLFRG
>SEQF1086_CAE43435.1 urease accessory protein, partial [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
KIANTFIKRGAAGGLDLSQAPGVTLTLAERRRSRQRLDLDEGRGELGMAIERGQTLRDGDVLVAEDGTYVVVRAALEDVA
RVTAATPWQLARAAYHLGNRHVLLEIAERHLQFEYDAVLIDMLAQLGGVTATRLRAVFEPDVGAYGGGHRHGHDESFGDD
YALAQAAYHAHEAHPHAHFHAGGHGHVHSGHGHGGKHGEHDAES
>SEQF1086_CAE43436.1 urease alpha subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRISRSAYAEIYGPTVVGGVGDRVRLADTLLLAEVEKDHTIFGEEVKFGGGKVIRDGMGQSQRLATDCVDTVITNALII
DAVTGIVKADIGIKDGLISGIGKAGNPDTQPGVTIIIGASTEVVAGEGLIVTAGAIDTHIHFICPQQIEEALATGTTTMI
GGGTGPATGSLATTSTSGPWHMAAMLQALDAFPVNVGLFGKGSSSSHGALLEQVRAGAMGLKIHEDWASTPASIDTCLNV
AEETDIQVAIHSDTLNESGFVEDTFAAFKGRTIHSFHTEGAGGGHAPDIIRAAGMPNVLPASTNPTMPFTRNTIDEHLDM
VMVCHHLDPSIAEDLAFAESRIRRETIAAEDILHDLGAFSIMSSDSQAMGRVGEIVLRTWQTAHKMKLQRGPLQGDSERS
DNERIKRYIAKYTINPAVAHGIAHLVGSVEVGKLADLVLWKPAFFGVKVNMVLKSGMAVSASIGDMGASISTPQPVQIRP
MWGSHGKALRTSVAFVSQVSLSNPAVSELGLNKRLEAVRGCRGVTKHDMVRNNWLPAISVDPQTYQVYADGQLLRCEALA
ELPMAQRYFLF
>SEQF1086_CAE43437.1 urease beta subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIPGEILTEPGQIELNVGRPTLTIAVVNEDDRPIQVGSHYHFAEANNALVFDRELATGYRLNIPAGNAVRFEPGMRRTVE
LVAVGGERRIFGFQGKVMGALK
>SEQF1086_CAE43438.1 urease accessory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKRAMLGSGAAALMLFSGAALAHPGHLGHELPGSMFAAGFWHPLTGFDHLLAMLAVGMWSALTHHTARQAVWLPVMFLA
LLFAGAMMGMAGVRLPAVEPVIMVSLLVLGLLVASRKAVQGWAGFALVGGFALFHGLAHGMELPGSEGALGFVAGFMLAT
LGLHLAGLFAGFRLKHWNLWLSRALGVGIAGYGALLFVGARV
>SEQF1086_CAE43439.1 urease gamma subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MELTPREKDKLLIFTAALLAERRRARGLKLNYPETVALITAALMEGARDGKTVAELMSEGTRILGRDEIMEGVPEMISNI
QVEVTFPDGTKLITVHNPVV
>SEQF1086_CAE43440.1 urease accessory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSETLDQWRAGLTLGFAPGHAGRTVLRERAHYGPMLVQRALYPEGPQVCHVAILHPPSGIAGGDALEIRVDVAGGARAAL
TTPGATRWYKSNGRQASQDVHLRVAAGGRLDWLPLESIFFEEADALARNRIQLESGAAAIGWDLIQLGRVNQSGHWSQGR
LHTATELYVDGRLLWVDQGLVGAQDDVRRQVSGLAGFPVHAALWSFGPRLDAEQNEELAGLMPWSDTLRGAATTMPYDAT
QSLCLVRCLGVHMEDVRAVMTDAWAYLRPRVLDTPAVVPRLWAT
>SEQF1086_CAE43441.1 heavy metal dependent transcription regulator (partial) [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNIGEASKASKVSAKMIRCCEQIGLIAAAQRTASDHRAYGHADMHQLHFIRRTRDLGCSVAESGDLLNPWNPQSRQSADV
KRLAKRTLSY
>SEQF1086_CAE43443.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKVEGRCHCGAIAYEAEVEPGTITVCHCADCQMQSGSVFRANISAPADTFVLLQGTPKEYLKIAASGARRMHAFCGNCGG
PIYSCAAENPQSYSLRVGALEQRHALGRPLRQIWARRRFSWLSSLGDVEEFDGQP
>SEQF1086_CAE43444.1 probable GntR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQHASSAGRRPAVPVYLKIRNAIRDAISNAAYAPGDLLPSETELAKRYATTRATVVHAIQQLVFEGLVERKRGVGSFVAQ
PKLSSTVDTHRVAYFEQDAFARDLTYEVIGYGKAVVEDHVRDTLRLGRGEPVYRLQRLCLLSGKPIAFELRYLPALVGAR
LTAEMLARRSVQSLLDEEVGMPITRFLNAVRVALVPAAVARHLQLEKGRPVMVRTHTFLDAADTPLLWGETLYREEYQIN
YVLTAMQAPDEAVGGRPRKGAGRA
>SEQF1086_CAE43445.1 putative methylaspartate ammonia-lyase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPMQQDVPPIRIEAVRVTAGIGGHWINDQMAVQTGATADGYFFEGPTSSTAFPAVRSPSVAYLVSLDLADGQTAHGDCT
TVANAGYAGRPLPLRREDVQAVQAVLQESLAGRSFAGFREAAGALDAMPLADTLRLPVEYGVSQALLEAAALASRTRMVD
VLCREFGRPGPTRGPGFAGSCGGAWEANVDKAIVRGLDMFPQSAIQSRAECERLPDYAAWIAGRIRKLGAAGYRPDLHFD
FHSSLGRMLDNDEDRVLDYLATICERAAGLTVFFEDPMLSGSAAEARERMGSLRAKLDARLPNARLIADEWANGPGNVRA
FAASGAAHAVQIKMPDNGSLLTTIDAIQGCQEHGTLAYLGGSCNETDISSRASIHVGLAFGAWRMLTKPGLGFDEGLMIM
TNEISRTLSKR
>SEQF1086_CAE43446.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHARLHSRGARLAARLALAALTAGAAALPQAAAAADSASFPDRPVTMVVPFPPGAATDIIARTVAQKLSDKWGQSVVVEN
RAGATGSIGSTYVARSAPDGHTLLVATTSSHTMGPNLSSRLPWDPVSSFAPVTLLAWAPNVLEVNPSVPAKSVQELIALL
KKNPGKYTFASSGTGSSIHLAGEMFKEQAGVDMVHVPYKGAAPAVADLLGGQVDIMFDTVALSLPHLKAGKLRPLAVTTT
RRSSSLPDVPTMREAGLPGYEMAAWIGLLAPAGTPEAVVARIQADVGAVLKMPDVKEKLQAQGTDISGMPGSEFAVLIKD
ELGRYGQVMKQAGIQPGD
>SEQF1086_CAE43447.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPAAHATSQPPATRWLAEHALGFDYDMLPADARRIVRHCILDWYAVTLAACREPAVAALVDDALEEGAGGASPVIGHAAG
VSQGAAALIQGTAAHWLDYDDVNLAITGHPTAVVYSALLPLALARGSTAREVMAAFAAGYETACRVGRWLGDVHYRHGYH
ATATAGAVAAAAACARLMRLSTAQTASALCLAGTQAAGLKALFGTMAKPLHAGLAARNGLMAARLAARGLDAGQQGLEAA
QGFAAVLSPAPDWPAATATPPGGLFLGGRLFKYHASCYGTHAVIECGRMLRERGARVQDIARITLHAHPGSENMCNIATP
RTANEARFSLRMNAAFGLLGLDASAIDAYTPARLADPAIAELRDRMRVEFHDDLAMMESRMLIEHHDGSAMQARHDAGVP
AGSIDDEASRLQAKFHALAAPVIGVGAAGRLRDAILDLDAAPGLHALAVTVPATGGAA
>SEQF1086_CAE43448.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSEPRPRRILPIIVLAQFCGTSLWFAGNAASADLGMGDSVAYVASAVQLGFIVGTLCSAWLRIADRYAASRLFFGSCLLG
AACNYPLTMLALATLPQPDAAVLILRFLVGVALAGIYPVGIRAAASWFQAGLGHALGFLTGALVLGTSFPHLMRALGARI
DGGLVLASASAIAVLGGAAMLAWVPDGPYARRAPSSGGGTLAQAWRSLPGLRAAAIGYFGHMWELYAFWTFVPFYVAAHA
AALGAPMAAPTVSLWAFAIIGLGALGCVGGGFVSRRLGSRPVALTQLSLSGLCCVLSPLCFALPTPAFLAFLLFWGIVVV
GDSPQFAALVAQESPPAQVGSIVTLVNAIGFAITVVSIQLLDALAGALPAPYVMAVLAAGPIIGVAWAGAGGWRPAPR
>SEQF1086_CAE43449.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAITGGGELHAVGRAQPISEGSEWTFELIQRYDEAISEIAREYRLDTYPNQIEVITSEQMLDAYASAGLPIGYPHWSYG
KEFIRNEQYYRKGMQGLAYEIVINSSPCIAYLMEENSMAMQALVIAHACYGHNSFFKGNYLFRQWTDADSILDYLVFARK
YVMDCEDRYGIEAVEAILDSCHALAAHGVDRYKRPTPISYREEAQRQAEREEHARRQYNDLWRTVPRQESPAGAGERRAV
FPPEPEENLLYFIEKYAPKLEPWQKELVRIVRKIAQYFYPQGQTKVMNEGWATFWHYTLLNRLHQKGRVTDGFMIEVLQS
HTNVVSQRGFDERGYGGVNPYALGFSMMQDIRRICERPDEEDRRWFPDIAGSDWLTTLDFAMRNFKDESFISQYLSPRLI
REFRFFAIADHQANPKLEVAAIHDDEGYRQIRKLLAAQHNRDNQVPDIQVVRYFRESDRALVLRHQQSRGRPLAGEDADK
VMKHLARLWGFRVRLEEAAPDGTVLSYRQIEP
>SEQF1086_CAE43450.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNSLIDRRLNGRNKSAVNRERFLRRYKDQIRKAVQDLIRERSISDMDQGGEINLPARDISEPSFRHGEGGDREIVHPGNR
EFAKGDTFDRPQGGDDGSGSQPGEGESVDQFTFSLSRAEFLNLFFEDLELSHLARTQLGDVKQQRWHRAGYTTTGSPSML
SVNRTLKASLSRRVALGVGARAALDAAEQELDAAREAGAPQAELDRLLAEVEKCAARVARVPFLDDLDLRYRNRVAVAVP
MARAVMFCLMDVSGSMDEMKKDLAKRFFTLLYMFLSRKYEHVDVIFIRHTDNAEEVDEQTFFYDPKSGGTIVLSALELMH
EIVQKRYSPATWNIYAAQASDGDSFGADAGKSARFLAENLLPATRYFAYIEVPDSQEARKSSLWAEYEQESASHFVMRRI
CERGEIFPVFHDLFKKETV
>SEQF1086_CAE43452.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43453.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE43455.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPEPAAHLPRPMAGRRVVDLSQFIAGPTAAQYLADFGADVVKIESPQGDGVRTLQGNAYGSYYARSFNTGKRSQVLDLRV
AADRAALDALLETADAFICNLAPSSLAKLDLRGPALRARFPRLVIALVSGYGQQDERVCMDTIAQCESGFALLNGDEDGS
PRLSTSWPVDMFSGMYTGMSCAMAMLDPAGQGCLIDLSMMEVAAAMLIGPAALAVSEGDALGPPMGNRDRASAPSSIYRC
ADGHVYILGGVDTYWARLRPLIGAEDAPFTERLRRAAHFDAQVEAWTLPQRRKAVLARMHELQIPAGNVRPPEEALAMIR
GLRPGAVSRPLPSGEHVPAFPALFDGQRLPRTATPHVGGGRRAG
>SEQF1086_CAE43456.1 putative coenzyme A ligase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKQQERQPYSDTIWDEAETWSRDRIEQFQLDALRRQLQRVARTSNHYRQVFAAAGFEPGDLKSLDDLRRLPFTHKRDYLA
GLQAEPPFGSLAAVAPGEAVRVHFSSGTTARPAPVLWTQADIERWADLYARYLYGQGLRRGDVFQCMFNYAWFVGGLGAT
LAAQHVGALVIPASSGDTQRQIETIYQYGTQCVIGTPSFMAHMAEAAQAMGRDLATSPVRMVCVVGEPGASIPGTRERIE
RQWGARMYDCYGALECQPIGWDTAAQLEPTLAEDFIYVEILHLETHEPVADGERGLLVLTHLDKQACPLVRWWTGDIVVR
DSRPAPDGRTHARLTGGVLGRSDDMLIVRGVNLFPSAIEDVVRAFPGLTNEYVIVLDDSLKDPNTGFLTGVKLRVERESG
AAADVGERLSQRLREKLQVRFQVEVVESGTLPRTVHKAKRVIHA
>SEQF1086_CAE43457.1 TetR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MASAHQTPADANGGESRDEILRAAAELFMEFGYAATSIDAVAQRLGSTKGRIYHHYRSKADLFFDVQVTAMNRLTAQVEP
LAREGGGAVGRLAAMALRHTQILLKEMPMQKVAVQGLERHLLEASSAAKRLRAVVKMRDDYEQMFVEVIDDGIREGSFVD
LPPRLLSKPFFGALNWATVWYSQRRLQSEEAIDDIAHALAAYALRGLLKDSNDEAARETALFRYDLG
>SEQF1086_CAE43458.1 putative acyl-CoA dehyrdogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTVIWKPALDDAATRWQTLAERLGRERFGPLAPELDRDQRYPWETIEALVEHKFAGLFLPTQWGGQGANLTTTVAAVEAL
GTHCASTSAIMCAYQLGAFPILLAGTDAQKDFYLREMTLGRATSFALSERIAGSDAAAIEATATREGDGWRLRGEKYWIG
NGGASRYYVVFAKTDPAAGGRGVSAFMVDKEQPGAEIDELSDKMGIRGTQTSNLKLDLVVPDSARVGELNRALRLALQTL
NVGRIMVAAQSLGVALGAYREAAGRAVARRAFGQPIGENQAIGFRLADMATEISAARMMLYEAARAYDAGQDVSNLGAMA
KLFSSEVSHRVVDNTVQIWGGLGYCKPTVAERLYRDQRILEIYEGSSEIQRLVLSRAVRKEAEEAAN
>SEQF1086_CAE43459.1 putative ABC transporter permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIRLPLRRAALLPLAVIVLYLPAWLGGSPAIYSAAVLIAILAVMSYGLDVVVSDLGEVSLGHTVFFATGAYVTALLSTRT
GAGAWITLAATIVAALGVSAVVGLVTLRLREFVFSLVTYAVAVVAVTVAANWAFLGGSDGLRGLPTLDLSVAGLSLTARN
DEELWPYAFGLLVVVIYLIDRFRHSRLGTAAIMVHQNPRLATMSGIDPARVRLQVFLFSAPISAAAGWLYAYQRAYVSAD
ILETYFLILMLTAVVLVGRRQLLGPLLATALVLVQEKFFSFGGYVDKIVLGSVLVLVLAFFPQGLMGLVRPLARLARRRQ
PASPVATTLENPK
>SEQF1086_CAE43460.1 putative ABC transpoter permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNLLQQLINGIVLGHAYALIAIGWTLLLGVARLVNFGHGQMYMVGAFVTWWATTSAGMPYLLALPTAMALGALIGLAMQR
IMLRATFEQNLVSIMIMTLGFGYVIQGAASLIFGSTGQILDTAWSQRDIEVGELWVTWQDAAIVVAAIAVFAGLKWLLEG
SRAGRLVRMVAEDPKLAQLAGVDVRRIYYGVFAFEGAAVAFAAGMVAPRTPILTSMGFEEVIITFVVVVLGGIGSVTGSY
AAGVALGVFTALFSALVSPTYATAAAFLVLIGVLVLRPGGLSAGAARGVH
>SEQF1086_CAE43461.1 putative ABC transporter ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAPLEDQAVLSARQLEVGYAGNHALGLDRLSVGRGEIVGVIGANGAGKSTLVNALLGWSRGRPTVRGEIRLDGRRIDAT
PTHQRVRAGLLLVPEGRLIFASMNVEENLSAAFDAGSTDGRRFYTRDEVFQLFPRLAERRRHLDAQLSGGERQMLGIGRA
LMMGPRVLLLDEPSIGLAPMLVSQVLQTLQTLARSGLSILLVEQNVRAAMEVVDRLLLLERGRLVLEGPAASVGADPRIA
QAYLGAHAA
>SEQF1086_CAE43462.1 putative ABC transporter ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIAQPEAAAPAPALSVQALGVRYGALVALEDVSWEVRAGELLGIIGPNGAGKSSCYDAVSALIPRTGTVRLHGRDISAVP
AHGLAALGIKRAFQQNAFFDDLSVLENMMAVLGEQAQARLLASALNPLGAARRRAQARAYAAGQLERFGVPAACHDLHPK
EISYGMQRMLSIALAYGRGATVLLLDEPAAGLGGADMAALVRLLGELKGEGVALVVIEHHMELIMAVADRICVLNLGRPL
ACGAPAAIQNDPRVLQAYLGSAQ
>SEQF1086_CAE43463.1 putative amino acid binding precursor protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRIHRLFTAGLLALSLGAAAQAQQTPIKVGVIFPLSGGAGPQGQHVTQAIQAMAAVINESGGVMGRQIEIVSRDDESTP
AVGVSRATELISTGVSVIIEGWNSPVTLAMQPVIARAGVLDITAISKADPILSGEGNPLAIRLNSSNSQDGAVIADYIKS
VGAKRVAFLTENDAYGNGAQESIEASLKKLGYAYEKVAEEKFPFTQADFRVAMTNVRAAKPDVTVAINANEGLGMPAIIR
QARQSRLPGKLVSAVGTVAPSVINVAGDAADGLIGADIYFPDVEPFASNPANQRFVAKTQEMFKYTPDKFMALGATSLQV
WAMAANELKTLDREAIAKRIRGGAFKGTAMGDLQFEPNGQLKSNYYLFRVDGRKIVVQP
>SEQF1086_CAE43465.1 enoyl-CoA hydratase/isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAQTPDAAEVLVDRADGILTITINRPQARNAINLAVARGIAAAVDELDASDDLRIGILTGAGGSFCAGMDLKGFLRGER
PSIEGRGFGGLTARPPRKPLIAAVEGYALAGGFELVLACDLVVAADNAQFGVPEVKRGLAATAGGLVRLQRQLPYRIALE
LALTGDMFPARRAHGYGLINQLTEPGQALEAAPELARRIVANGPLAVAASKRVVVESQDWPADEVWERQAALTDHVFESA
DAREGSAAFAEKRQPVWQGK
>SEQF1086_CAE43466.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATDARFDGPGPDARYQAALAEGRLLLQHCEDCAAVRFPPALVCRACGGARLAWRESSGQGSVYTATTVRDRAGDYNVSL
VELEGGARMMSRVEGVEAAQVRIGQPVRARIVAGEEPYVVFAPRDGGAA
>SEQF1086_CAE43468.1 putative hydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAVDPDRLLAAEIPAVEQQYDWRQCVLYALGIGAGLDPEDGLDLPFVDETRLKVAPTFANVLADPGFWMRDLPLGLDWLR
TVHGEQSMRVHRPLAGRASVRGVTRIVDVADKGRDKGALIYAERELIDLADGAPLATLSQTVFCRGDGCFGGKPSARPPP
PPVPARAPDASVHARTSPQSALIYRLSADLNPLHIDPAVARQAGFPRPILHGMASFGAVGQALVKACCGGEPAAVRGMGG
RFSAPVFPGETVRVDIWRAGPGRAAFQARVAARDVVVMDNGTFDYEA
>SEQF1086_CAE43469.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTGSTAGKVLVVGALGVVGRAALEHFGQRPGLARVGLSRHAPDFAPEASWVSADLRDAQATRAALAAHGDATHVVYAALN
EQPDLLKGWRDSGNVDLNTGMLRNTLDALREAPLRHVTLLQGTKAYGVHTGRPMPVPARETDAVRDHANFYFDQQDLLAE
RAAAQGFGWTIFRPQIVLGVALGSAMNPVATLGAYAALSREAGQPLRYPGHPHLLTECTDARLIARAIAWAWDEPRAHGE
AFNIANGDVVLWQPVFERLAALFGMPLGEPVDTRMREAMPQLAERWRAIAERERLAVPELRDLIGLSWQYADATWAARHP
LPVPPLVSTIKLRQAGFGDCIDTQDCIVEHLREMQRLRYLPR
>SEQF1086_CAE43470.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE43473.1 putative fatty acid desaturase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVRPAEWLRHRRDWQSVLYLAALPALAAWQWVHGWHWALYAPMLFLTLGVGVIHHNHAHRRMWRPRWLNRLTDFWLTLLQ
GHPTFVFHAAHNANHHRYKHGPRDVARTYRFGGDTNHLAGYLLHPLQAVVVLYPLFLASLRRLRSRRPGVWRYCLRQYAA
WLGLWGGLLALDPGKAFWLVIVPQLHGLHWLLATNYLQHAHADGGPGRHAALSYARNFEGWVNPLLFNIGLHTAHHENPR
AHWSELRALHWQHYRDRVPSRLNERGLAPYMARVFVLGLFSRRCRTHTLMRP
>SEQF1086_CAE43476.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE43477.1 ribonuclease HI [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQNLEGSGDGQQVEMWTDGACKGNPGPGGWGVLMRAGQHEKTMHGGERQTTNNRMELMAVIEGLRALKRPCRVTIHTDSQ
YVMKGMTEWLANWKRRGWRTADKKPVKNVELWQALDEQVGRHQVQWRWVRGHAGDPGNERADALANQGMEAARGR
>SEQF1086_CAE43478.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAEETPPIVELAEWFQTPPGQYVLAWEQAQFDEAVADIFGYYAWQVGLAEPNLLRANRMPFKAWVGAGVPPPELAQGWQA
CVAAAPEALPFESQSVDLLVLPHAFECAEAPHLVLREVERVLVPEGRVVISGFNPWSLWGARNLMPGMEAWLPLPLSAQV
ALPRLKDWFKLLSFEVERGRFGCYAPACRTDKWLRRWRFMERYGQRWWGLGGAVYVVTATKKVAAMRLIGPAWKTRRKRA
QAASVVVNRQADDPGR
>SEQF1086_CAE43479.1 probable hydroxyacylglutathione hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQTAPPLSAVVPLPAFSDNYIWALAHEGQAAVVDPGDAAPVLRWLRATGATLRAILLTHHHPDHVGGVLELVQATGATVY
GPAGETLPHCDVRLAEGDRVTLPELALALEVLDVPGHTAGHIAYTGRAAGVERVLFCGDTLFAGGCGRLFEGTPAQMLDS
LEKLSALPADTQVCCAHEYTLANLRWALAVEPANRTLQQWYQRAQELRNEGTPTLPSTIGQERETNPFLRTPHAAVAHAA
AVWSGRSLATPVEVFAALRQWKNNFK
>SEQF1086_CAE43480.1 putative membrane-bound lytic murein transglycosylase D precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRFLRLLLPLFLAVLAGCAGTAKQNQAAGPSSNRYIAQDTSRTVDLTSPPSDAWDRIRRGFAIPNLNTDLAQEWTDYYAS
HPESVQRMAERAGKYLYFIVDEINRRGLPTELALLPFVESAYNPTALSRSQASGLWQFIPTTGQHFNLKQDWWRDERRDP
IASTYAALDYLEKLFEMQGDWYLALASYNWGEGSVQRAMAKNEAAGLSTDYLSLNMPDETRNYVPKLQAIKNIIANPRKF
AVVLPPVENTPYFVAVQKNRDIDIELAARLAEMPLDEFKALNPAFNRPLIRGEHAPTLLLPADRADRFNANLQNYKGDLS
SWKVYHTRRGESYAAIAKRFGISEAKLRASNDIGSKRKVAADQALLIPGVPSGDGAANIQLASLSPPVGALDNVGEPRAA
AAPRGKAPARVASARPNVRTHKVSSGDTLFGLARKYGTSVGALRALNNLKGNNLKLGSQLRIPGTGTRG
>SEQF1086_CAE43481.1 enoyl-[acyl-carrier-protein] reductase [NADH] [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGFLAGKRILMTGVLSNRSIAYGIARACRDQGADLAFTYVGDRFKERITEFAASFGSDIVLPCDVAEDSQIDAAFAELGK
RWDGLDGLVHAIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPAMAKAALPLMEGRKGSVLTLSYLGSERVVANYNTM
GLAKASLEASVRYLATALGPRGIRANAISAGPIKTLAASGIKDFSSILKFVEANAPLRRNVTIEDVGNVAAFMLSDLAAG
ITGEITHVDAGFSTVVPGMEN
>SEQF1086_CAE43482.1 transposase for IS1663 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF1086_CAE43483.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTIQVRANTPGGLQYTATAEGHELPLAMPQPQGEGPDPHDYFDTALGGCKALTLMVYAQRKGLPLQAVDVDVVRDASEER
KGIYRLTAKLKLHGDLDDAQIDELLKVADKCPLHKLMTATDIQVSTIVVE
>SEQF1086_CAE43484.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSARQLLDQLLQSGQSLMQGAGAQAQQATQGGKGTFLAGLGGGALGAGALGLLLGSKKARKIGGKVAMYGGMAALGALAY
RAYDQYQRNQAGGAAAPAPQTLDRLPPAPAEQHSNAVLVAMIGAAKADGHIGPDERQLLETELAKLSGDAGDRAWLEAEL
ARPLDPAVIAQQARTPEMGAEMYLASLLVADEQSFMERAYLDELARQLKLPAELKQQLEAQVPAAA
>SEQF1086_CAE43485.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRPVAPMTTMKSQVSILLAGCLLGAGAAAAQAPATYPDHAITIVVTFPPGGGTDLLARKLGAAMQQRLGQPVVVENRPGA
SGNIGARAVAEARPDGYTLLMVNSSFAVNPGVFRNLDFSPTRDFTAVINVAYVPSVIVTAEPAGDAGLPERLRQADTQSR
TLAFASCGNGTPQHLAGEMLRQASGAWLQHVPYRGCGPALTDVLSRQVPLGIVTASSAAPFIHAGKLRALAVTSAQRSPL
LPDVPTVAEQGAPGYELDQWHGLLAPAGTPPAVIQRLYEALSAIVAEPAMRRELESLGFNPVSEGPERFEALVQADIARF
AALTARMGLRAD
>SEQF1086_CAE43486.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVSEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWQRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43488.1 two component response regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDNPHTKLLVVDDDPALRQLLADYLNRHGYDTLLAPDASDLAARITRYAPDLLVLDRMLPGGDGADACRRLRDQGEDIPV
ILLTARDEAVDRIIGLEAGADDYLGKPFDPRELLARIEAVLRRKRGPSALTKDAPVSFGPFVFDPATRQLLRDDTPVKLT
GGEINLLEALVRNAGKPLSRERLLALARDDDGGERNDRAIDIAILRLRRAIEEDPKQPRWIQTVWGIGYRFSP
>SEQF1086_CAE43489.1 two-component sensor kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLLRLPAPRSLRMRLILLVLGSVLLAQAATLATVSYFRHKFMEDVAIDYIATTIRTLRASLSQVPTDERAEFVRQASGN
QWRLWSRSLPADARLQRWHRGPQEDEAERERMRREYERRHPPPDDIRRDLRGLVSELNERLSDGTRVALSRGPRPEIFIS
LAPSPSPDDAPPLREWLVIPLERLDPPVATPLIAFWVGGIGLVLLLAAWFSWHITRPLTRLADAADQLAAGQPQRVEPSG
PHETRVLGERFNAMLDALAESDSVRRTLLSGLPHDLKGPLSRMWLRIEMADDPTLKEGLRKDLQDMQHMVDQFIGFVRGT
DPAAYRYAPLALGEWLAERVGAWQGAGTDIRLQAPDNGALGIQADAVALGRLLDNLIGNALHHGAPPVEVSLRRDADMAV
LEVSDHGPGIAPERRTEALRPFARLDDARTRTGNVGLGLALAEAIARAHGGGLELRQAPSGGLLVRITLPLAKA
>SEQF1086_CAE43490.1 putative cytochrome oxidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIATLAASLGLSPDDPSFWMPLVFVGLLLLLMAAGIVLDGFDIGVGLLLQLAPSEERGRMMGLLSPWRDANEFWPLLGLG
LFVSAFPFAWGGVLGKLFGPLTVMALGMVLRSVSFEFRIRARTEIKPRWIFGFWVGSLLTALGQGMVLGRIATDYQADSG
YGWFAFFVGLCVMAAYALLGACWLVMRVDGELQRRAAGWARHSIRWTAAGMVAIAVTLGLANAGIFYKWSNTAHLGVAAM
VWALMLLGFVAAEMLLARLPGKADGFSWLPFVLCVMLFVLMLCGLAYSFFPYLILDDMTIWDGSGALDSMRLVLAGTVIG
VPVVLVFNILAYRSVFGKERRPVPLLPPPGA
>SEQF1086_CAE43491.1 putative transmembrane cytochrome oxidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNIPPLLLARAQFTASLGFLALFLAISLALAWLLLFFKLRARWSGQSGWTAAYRFWVRIFALAFVLALACAVPVLIQLGS
LWSGLMDKIGNLAGPLLGYGVLSIFIVKSCFLGVMLFGQRRVSDAAHTLAVLMVAIGQLVAVGWVLALFSWLQTPDGAVL
IDGRYQVYDWRAVVLNPSFGWRLGLTVLGAFLTAGFLMLGVTAMQALRRPLDDGERHAFRAGLTVALLASLLLGPVAAGM
GEVTARLQPAKAAAAAGFWHSGAEPELVVFGWPSARAQANLAAVSLAGAGGRWLHRDASLGYLGLDKFSGMQPPVAFTFW
SLRLALGLGLLMLAASCATLALTCRRGFDPVALPRWWLRVLSLLMFAGALGVVATWCYDLAGMQPYAVNRAVTQSEVLGP
VTTPALLYSLAGHIALYAVLLAAFVGMLFHAARYGVVPVRKTGGSS
>SEQF1086_CAE43492.1 putative glutaminyl-tRNA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTHAPTPPAASNFLRPIIEDDLQANRFQGKLWAGKPGPAALQAQGQPDPARIRTRFPPEPNGYLHIGHAKSICVNFGLAR
DYGGVCHLRFDDTNPEKEEQEYVDAIIEAVHWLGFDWQADGNDNLYFASDYFEFMYEFAEALVQAGHAYVDEQSAEEIRA
SRGTLTEPGTDSPWRDRPADESLLRLREMRDGKHPDGSLVLRARIDMASPNINLRDPVMYRVRHATHHRTGNAWCIYPMY
SWAHPVEDALEGITHSICTLEFEDQRPFYDWILARLAELGKLARPLPHQYEFARLNLTYVVTSKRKLLQLVREGYVDGWD
DPRMPTLFGLRRRGYTPSSIRLFCDRTAVSKSDSRIDYSLLEQAVRDDLDPVAPRSVAVLDPLKLVITNYPEGRSETCSA
PRNPHDPQAGVREFPFTRELWIEQDDFREEPPKKYFRLFPGNTVRLKYGYVVRCTGFTKDESGKVVEVQAEYLPDTKSGT
PGADSVKVKGNITWVSAAHAVPAQVHLYDRLFADAHPDGGDKDFLACLNPNSKQTVQAWLEPGIEAVPGATWQFERLGYF
TVDSKDSRPEAPVLNRIVTLRDSWQAA
>SEQF1086_CAE43493.1 putative cell division inhibitor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTESLALDFKSATLYAIRVVLHDADTTRLRAALDKRMADAGSFFENEPVVIDATRVDAPVDWPALLQALADHNLPPIGV
VAEGANLQGARDAGLVPVELSTSVARAPQVIDTAPPNDVATPVPSVPEATAEATAKAGPQDDEADGEQADEAPAHNPESV
PTRAARETTEANRPTATPPQSSSALVITKPLRSGQRVYARHTDLIVIGMVSQGAEVIADGNVHVYGPLRGKAMAGARGDT
SARIFTTQLDAELLAVAGVYRVVEDKLDRALHNQPALVRLDGDTLRIEALKG
>SEQF1086_CAE43494.1 putative septum site-determining protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRIVVVTSGKGGVGKTTTSASFSAGLAMRGHKTAVIDFDVGLRNLDLIMGCERRVVYDFVNVIQGEASLKQALIKDKQL
ENLFILPASQTRDKDALTQEGVEKVIDELKEMGFDYIVCDSPAGIEAGALMAAYFADDALVVTNPEVSSVRDSDRILGIL
AAKSRRAVQGDEPVKEYLLLTRYNPKRVNDGEMLSLSDIEDILRIKLIGVIPESEAVLQASNQGLPAIHLKDTDVSEAYK
DVVARFLGEERSLRFTDYEKPGLLKRLFGGK
>SEQF1086_CAE43495.1 putative cell division topological specificity factor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSFLSFLLGQKKSSASVAKERLQIILAHERGRGDSPDYLPQLQQELVAVISKYVKIDPEDIKVHLERQDTLEVLEVKIEM
PQN
>SEQF1086_CAE43496.1 transposase for IS1663 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKQVHLC
FGVLKNRIPYQPNYAMNG
>SEQF1086_CAE43497.1 osmotically inducible lipoprotein B precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKIGTLSKACMAALLAVSMAGCSSWDSMSRRQKSTVGGAALGGVAGAVITNGGILGTVGGAAIGGVIGDQVGK
>SEQF1086_CAE43500.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAFPLLATTIWSVNMVVTKMAADVIAPASIGFYRWVLAGLLLAPFALPGVLRQWPQIRPNLGRLAVLGGLGMALYQGLMY
VAAGTTTATNMGIITAMVPLLTVVVGSLVLRERPALTAILGAVVSLAGLGILLGEGNPLRLLALGGSRGDALMGLAALAY
ALYGVLLRKWPMSVGPWQSLFVQVLFGIVFQLPAFLLTPASSLNAQNIPLVLYAGIFPSLFAPFLWMQGVRYLGPNRASI
FLNLMPVVTVAIAAAFLGETPHLYHIAGGLMALAGVSLAQWRPARRRA
>SEQF1086_CAE43501.1 hypothetical protein BP3235 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSASAQPPASLTHFSPAELDMLAKTADALSAYLGKPVLAEVALGDEGTEWVTFGVALDTDADETDDAAPHVQMGGAGARL
LGGRGGLPDSDTESYDCLYLWAVQISLVEGERFIKLDQDGDECAWSDQLTDVLPFALSEDELPPDDDEDDEDDEDGADDD
GPGHNGDTHRH
>SEQF1086_CAE43503.1 putative binding-protein-dependent transport protein (periplasmic) [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRTMIAIAIAAACALPSIGQAKTFRWASQGDILTFDPHSQNEGMTIAANSYVYEPLVAYDKDFKVVPALATEWTQVSPT
LYRFKLREGVKFHDGAPFTAEDAVFSIHRAMAPTSNYKAYITGIKEARKIDDYTIEIETSAPNPVLLRQLPNVFIMNKAW
SEKHNVAKPQDFVNKEETFAARNTNGTGAYKLKSREVDVRTVFVENTEWWNKDRKIGNVTEVVFTPIKQNATRTAALLSG
EIDFVLDPAAQDLERLRQQAKVVEGNEYRTIYFGFDQKRPELLYSSVKGKNPFADVRVREALYRAIDVEAIKRAVMRGLS
APTGTMIAPQVHGWTEALHKRVPYDPEKARALLKEAGYDGTLSFTLDCPNNRYINDEAICQAVVGMWAKVGVKASLNAMP
RATYFPKVQSRDTSAFLFGWGVPTFDAMYTLQNLVRTKGEGADGMYNLGDYSNKEADAIIDRIKTETDPAKRDADIVRAL
EIHAQEFGHIPLHDQVIPWAMRKNVTVIHRADNRLSADWVRID
>SEQF1086_CAE43504.1 putative glycosyl transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIDSQFQFTVLTPTYNRAVTLHRVFQSLQRQTCRDFEWVVVDDGSTDNTHEVVRAWQAQADFPIRYVWQHNQHKKTAFNR
GVREARGMLVVGLDSDDEIPPDALAILKDAWEGIPADRRETYVAVTGLCARPDGSIVGDRFPQDVFDSTAVDMYFRYRVQ
GEKFGAMRADVLRRFPFPEDVAGFVPESLVWWAISRAGYLSRFINRVVRVYHDTPGGLSQGGVSLSSNIQGLYLLAWDML
QHHLDWFRYRPREFIMAAARYTRFRLHLDNSGLPTAVQAYRLTQPSARLLVLLMWPLGYLLYRRDRRRGVA
>SEQF1086_CAE43505.1 putative LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAYSYFAIGRGTLAPYLSDPVMQAQTVQLNDIALFVEVAKRKSFSLAARALDMPTSTLSRRINQLEKAIGLRLINRNTRR
LELTDAGTVYLLRCQGLIDETRLAREQLESLTGRPKGRLNISMPYSLAIWLLPTSLGAFLDSYPEIDCEFDLNLNASATS
QGAPFDVILRFGRDSGDDETPDPNTVVDEIISLDSYLYASEDYLARYGEPRDPADLGRHECLRTAIDPEHSHWTLHNGER
TERVEVSGHVAGNNISVVGTLAGLGLGITRLPHCQALDPVIERNSLRRVLPQWRVQPISIYAVYPSPILPGRTRVFMDFV
RPMLGPAPTGPQPRA
>SEQF1086_CAE43506.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPSYSDFRRRLFAPAMAGAGAAATPLEIIMAERKRVRRNTLERRCLGKAFKRLFVKSPKGVFKMLEKIKRV
>SEQF1086_CAE43507.1 putative excinuclease ABC subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSQIRIVGARQNNLKNLDLTIATGELVVVTGVSGSGKSSLAFDTLYAEGQRRYVETFSPYARQFLDRMDKPQVDRIEGI
LPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFARGARLYCRGCGKQVRRDTPESVFHSLAGRAAALGDPRLVVTFPIAV
PANFTEDEVRGFLDQQGYTRVHAEEAASAAAPAPKARRGKSAKGAKDGAAPVARRILHVVQDRFRFAAAERERVMEALDT
ALRMGAGHLAVYAMGEEGGADQAVWKYSDRLHCADCDIEYTDPLPSSFSFNSPLGACEACRGFGRVIGIDIGLVIPDENK
TLLEGAIKPWQTPSFKECQDDMVKYAPRAGIPLSVPWKSMTPEQRGWVLHGDPDWKGGNQAWKTQWYGVHKFFAWLESKA
YKMHVRVLLSKYRSYTPCPTCHGARLKPDALLWRLGSRAEADAVLPPGEGRYQRFMPAGTSWSRPQLEALDGLSVHDVMQ
LPIERVRRFFDGLRFEGVLDAAADLLMTEVRARLKFLCDVGLGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLD
EPSIGLHPRDMHRVVEVMHRLRDAGNTLVVVEHDPQVMVAADRIIDIGPGPGERGGRIVFDGSPAQLRAANTLTGDYLGG
RQRVEAPRPMPVANNTPRLILEGATAHNLNNVSIELPLGRLVCVTGVSGSGKSTLVQDVLYPALLKQKGKPSEAPGAFDR
LLGAEQIADVVMVDQTPIGKTARSNPASYVGAFDAIRKLYAQAALSKERGYTAGTFSFNSGDGRCPTCGGTGFEHVEMQF
LSDVYLRCPDCDGKRFRPEVLEVRVEHLGKSASIDQVLEMTVSEALEFFKGLRDVQTGLAPLADVGLEYVRLGQPVPTLS
GGEAQRLKLAGHLAEAARSGISTAKVAKKGSLFLFDEPTTGLHFDDVARLMRAFRKLLAAGHTLLVIEHNLDVIRAADWL
IDLGPEGGDAGGEVVGVGTPQDLMANDRSHTGLALRDYEGSILPVAPVSALAEPAAAYGEEAGTPLQSLMRRRRQAAQSI
EIRNAREHNLKNVNVEIPRDKFTVITGVSGSGKSTLAFDILFNEGQRRYLESLNAYARAIVQPAGKPDVDAIFGIPPTVA
IEQRTSRGGRKSTVATMTEIHHFLRLLYVKLGTQYCPDCKVAVEPQNADQIVARLLREHKGQHIGVLAPLVTARKGYYTD
LAKWAGSKGHTHLRVDGAFIPVSPWPRLDRYKEHTIELPVADVVVDPGNEAALRDAVRQALEHGQGVLSVVYPLDRLRAG
LDGDLQQQHFSVKRACPSCGISFPEPDPRLFSYNSKHGWCGGCFGTGLQLQGFDAEQTGEETAWNAWYEGEARTCTVCHG
QRLNRVALAVRWRDRSIAELAALPVSDAHTFFTGLVTRGREGEIARDILAEIRGRLNFMQEVGLSYLALDRAAPTLSGGE
AQRIRLAAQLGSNLQGVCYVLDEPTIGLHPRDNRILLDALARLEGNGNTLVVVEHDDDTIRRASHIIDIGPGAGIRGGRV
VAQGSAQDLIDAPESVTGRYLAKPLAHPLNGRRAVTADTPMIRVHGARLHNLRSVDASIPIGRLSVVTGVSGSGKSTLAR
EVLLDNLVQAVSQGKAPGWSGCERITGWEVIDRVLEVDQTPIGKTPRSCPATYVGFWDDVRKQFADTREARMRGWTAARF
SFNTGDGRCPICEGQGMRTIEMSFLPDVKVPCDACNGARFSSDTLSVQMRGKNAGELLAMEVDDAIGYFAAHPKIHRPLQ
LMQDVGLGYLTLGQPSPTLSGGEAQRIKLVTELSKARLTEGVITTGRASRAPHTLYVLDEPTVGLSMADVEKLIHVLHRL
VEAGNTVVVIEHNLDVIAEADWLLDLGPEGGSGGGQLVAEGSPEHVVSLRERSHTGRVLSEFLQQ
>SEQF1086_CAE43508.1 putative chorismate-binding enzyme [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MECRFEDRLAGRALRLAGDPIRIEARSVDAVAPALREIERARAGGRWIALLLDYELGEWLLPEALRAPASGAAPAPREDG
RARLTALAFERAEVEAPWPAPATPAARIVSVAPRMARDDYLRAVDAIRELIAAGELYQVNYTQPLDVRIEGDPRLLYRQI
AARHPVGNGAYIEDGERTILSFSPELFVARQGERLVTRPMKGTAPRHADPAEDARLGRELLASDKNRAENLMIVDLLRND
LGRLATPGSVKVDALFSLERYPTVWTMTSTVSAHAPHAGLADVLRALFPCGSITGAPKIAAMRRIRQMEAAPRGLYCGSI
GWLAPDGDFSLNVAIRTLVLDRAGHGVYGVGGGIVHDSDAAQEWQECHWKARILG
>SEQF1086_CAE43509.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQPELIETILVTADRQLPLLGRHLARLLTSCQALRYRCNEPAVESAIMAAVRGLHAPGPHRLRLLLARDGSHDIQTAPLA
PLPPDQEVMLAPEALDADEPLLRYKTTYRPWYAHTIEWLPSHPRVFDLLYLNQHGELCEGSRSNVYLELGGRWYTPPIAS
GCLPGVQRAELIDQGKVQERTLTMSDLRSAESIRLSNALRGWIEVQYH
>SEQF1086_CAE43510.1 transposase for IS1663 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF1086_CAE43511.1 putative oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRPVVLVTGASRGIGRAIAQRLLADGYDVVNFSRGKPADVLPGERFVPVDLSDTEAARRAATELAAQREVLHLVNNAGL
IEVAGIDQVAPDAMQRTLALNLVAPLVLLQALLPGMRARGYGRVVNIGSRAALGKPGRSAYGASKAGLAGMSRTWALELA
PAGITVNVVAPGPIATELFNQSNPPGDPRTRQLEAAIPVGRVGRPDEVAHAVASLLDPRAGFITGQVLYVCGGMTV
>SEQF1086_CAE43512.1 putative conserved membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRTPGQWRACRAAVRALIAACMATLAAQAGAAGYPEHPVTVVVPYPPGGAADIFGRAIAHAMQPHLKQTVLVENRPGAG
GNVGMTYVTRSKPDGYTLGLGTIGTQSINQFLYADMPYDPGRDLVPVALVSTTPNVLAVSARSPYRTLADVIEAARQRKD
NKLTYASPGVGSSVHLAGAYFEAVAGISLLHVPFKGTSASLPAVAGGQVDLLFDNLPGALAQIKDGSLVRGIAITSAQRD
PSVPDLPTFAEAGVAGFDVTAWFALYAPRGTPQPVAAARQGLQAPELARQFGAMGARPGDKFGAQLGQFEQAERQKWGEL
IKQRGIRAQ
>SEQF1086_CAE43513.1 putative fatty acid CoA ligase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRAALAPLPEAAMPAAELFATRLDTHARERPEAVALIDRDRPVTHAALRAGVLDLAGGLAALGVCRGERVALWLPNCAHW
VTMFLACARLGALTLAVNTRFRAQELGDILGRGQADWLVYWPGLKGIDFAGILAAVPPAARARLRGAIVVDGSGAQATPG
PAGLAAHALAALHGPAPLPAPNAGVLCFTTSGTTSLPKFVLHDQDTLLRHGDAIARSYGYDDDSRILASAPFCGAFGFAT
LVGALARGVPVICEPAFDAARSVAAVRRHRVTHTYANNEALVQMFRLGERADFATARLFGFASFAPALGDLLPLARAQGV
PLTGLYGSSELIALVAAQPREPADGDVSVRYEPGGALIHPEARVRARDPQDGRILTDGESGEIEILAPSLMRGYLDNPQA
SAGALTDDGYFRTGDLGYTLGTRQFVFQTRMGDSLRLSGFLVNPAEIEQAVEALPGIRACQVVGATRDGKTVPYAFVLLD
AGASPDPPGWMAACRQGMAGFKVPAGFQVLEAFPVVESANSAKIQKHKLREQAEALLAAAPAA
>SEQF1086_CAE43514.1 putative transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAARLFARSPQPLYLQAAAVFRGHIQTGVWRPGRQIPPLDALAARYGIARSTVRQALGLLEADGLIRRSRGSGTFVEDT
LPETPTLLIPKNWAETVALSRQLGTVALHESSAQQPLPDDLGIPCDFARDGRFQYLRRLHTAAAGPFCFSEVYLESALFR
KHRAEIRASTVAPVLDRHYRARLSHARQVLNVIEAGAASAQVLRIPVSAPVAELRRYVCIDARVVYFARLEFPFHKVRME
FDLLP
>SEQF1086_CAE43515.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNSQPSVIAPACEADAERRFGGLARLYGPDAPAALRGAHVAVAGLGGVGSWTAEALARCGVGALTLIDLDHIAESNVNRQ
IHALSDTLGQAKIEAMAQRIGQINPACAVTRVDEFVAPDNVMQVLGGPYAAIVDCTDQAAAKIAMILHARQRGVPLLLCG
GAGGKTDPLALRAGDLSEAVNDALLAKLRNKLRREHGFPRASDANGKVRKRVPRMGVRALWFDQPAILPDAWTRAVEGED
DMGAAGTRAAPQGLSCAGYGSVVTVTAAMGLAAANEVLRWVVGKPGA
>SEQF1086_CAE43516.1 putative inner membrane efflux protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTSDPTPSRPTHGPELSGAGYLCLLAMLNHMALTGGRITVSLTALKLGLSTFTVGMLVAVFAVLPMFASVHAGRWVDKI
GVVRPLVIGSSLVTFGTALPFVSQTQAALLVASCCIGIGFMLHQVATQDLLGHAEPRERLRNFSWMSLALAASGFSGPLI
AGLAIDHLGTRLAFGMLALGPMLSLVGLYLLRQPLRTMNGALTGGSNRPAERRRITELLAVPPLRRILMVNTILSGAWDT
HLFVVPIFGVAIGLSATTIGVILAAFAAATFVIRLVLPFIQTRVRSWTLVRAAMATAAIDFLLYPFFTDVGMLIGLSFVL
GLALGCCQPSMLSLLHQYSPPGRAAEAVGLRMALINASQVSLPLTFGALGAVIGVAPLFWAYALALVAGGWANRNPPQES
DSSKSS
>SEQF1086_CAE43517.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTQSPPSPHDPHGAAALPFRLWTAEERRASLDTALREWRDGEDVWVYGYGSLIWRPDFDFVERRLATLHGHHRALCLWS
RVNRGTPECPGLVFGLDRGGSCRGVVYRLAGRQVPDYFPALWDREMSTGAYLPRWLRCATEHGPVNALVFIMNRANPAYI
RALPEPELLAIVRRASGRYGPCTEYVVQTAQALRQAGIRDARLEQIARQLEADVHPLGV
>SEQF1086_CAE43518.1 pyridoxamine 5'-phosphate oxidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSVSDLRQSYEKGVLVEEQAAASPFQQFARWFDEAVAARVPEPNAMTLATVNAEGQPSARIVLIKGYDDAGFVFFTNYES
RKGLDLDANPRASLLFFWQPLERQVRIEGVIEKVSAAESDEYFHSRPLGSRLGAWASRQSQPITRDELEAREREFRDRYG
EHPPRPPHWGGYRLKPNRFEFWQGRPSRLHDRLRYEPDGKQGWTIDRLSP
>SEQF1086_CAE43519.1 putative monooxygenase component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAAFPPAFDAAFFRTALGRFATGVTVATTAGPDGQPVGLTVSSFNSVSLNPPLILWSLARTSSSLAAFERCQRYVVNVL
SASQIALARRFATGKTPERFAGLTLAQAPAGTPMLGEGCAAWFECRNRSRYEEGDHIIMVGQVEHCGHSGVPPLVFHAGG
FDLTPPHGGASS
>SEQF1086_CAE43520.1 putative conserved exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSLKARLCVRGKHLLYEYCAA
RGVPHQRLGKLIVATSDAEASQLDSIARRAGANGVDDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDA
ESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGIPRDSIPPEYLCKGSYFTLAGR
APFSRLIYPVPQHAGLGVHLTLDLGGQAKFGPDTEWIATEDYTLDPRRADVFYAAVRSYWPALPDGALAPGYTGIRPKIS
GPHEPAADFAIAGPASHGVAGLVNLYGIESPGLTASLAIAEETLARLAA
>SEQF1086_CAE43521.1 putative formyltetrahydrofolate deformylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQHNDYILTLSCPDRTGIVFRVSGLLFELGCNIRDSQQFGDEETGRFFLRVHFDLPRAAAESALREQFAALANGYDMQWQ
IHDAHRKARLLIMVSKQGHCLNDLLFRVSSGQLRAEVAAIVSNHNDYASLAASYGIPFHHMPVTPDTKAAQERQVLELVE
REQIDLVVLARYMQILSADMCQALAGRAINIHHSFLPSFKGARPYHQAHARGVKIIGATAHYVTSDLDEGPIIEQDIERV
DHTMTAADLTQVGSDIESLVLSRAVRSHVEHRILLNRSKTVVFR
>SEQF1086_CAE43522.1 putative LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDLEPRLLRYFIAVAQERNFSRAAQRLHISQPPLSYAIRQLETQLGARLFERSSRHVALTDAGRVLYGEALSLLRQGEEV
GRLVRRAEAGLQGRLRIGFVGSMLYRGLPDLLAALRAELPDVEQVLAERNSHDQLEALRCGELDLGFIHANPPPEGVSAR
DLVAEPFVVCLPDTHRLAGQRSLRLADLAGEDFVFFAQAASPSYYETVLSLCVAAGFHPAVRHEVRHWLSVAALVASGLG
VSIVPACLARAGLAGTCYVAFEHQARSVCQIAWPSLAPTSLQATALQAALRHFAPPPVRA
>SEQF1086_CAE43524.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43527.1 indole-3-glycerol phosphate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNDILAKILAVKAEEVATARQMRSEAELLREAQARQDVRGFAQAIEDKISQGKAGVIAEIKKASPSKGVLRENFDPAEIA
ASYAMHGAACLSVLTDVQFFQGSHDNLRRARAACSLPVLRKDFIIDPYQIISARAMGADCVLLIVATLAPAQLRDLETLA
IDLGMDVLVEVHDAKELDAALALRTPLIGINNRNLRTFETTLQTTLDLLPMIPAGKRVVTESGILKPEDVRLMREHDVQA
FLVGEAFMRANDPGVELARLVA
>SEQF1086_CAE43528.1 anthranilate phosphoribosyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTIAATEALTRCIEHREIFHDEMLHLMRLLMRGELSPQIASALLMGLRVKKETVGEITAAAQVMREFATPVVTPNPQDLL
DMCGTGGDGSHTFNISTTAMFVAAAAGVPIAKHGNRSASSSSGSADVLEALGANLQLTPEEVAECVAATGIGFMFAPAHH
GAMKNVAAVRKELGVRTIFNILGPLTNPAGAANQLMGVFHPDLVGIQVRVLERLGSRHVLVVHGKDGMDEASLGAATMVG
ELKDGVVREYEIHPEDYGLSMMSNRGIKVSNREESRALVIEALDNVDGVARDIVALNAGLAIYAGNKADSIPEALALAFE
TISNGSARAKLEEFCAYTRKFQK
>SEQF1086_CAE43529.1 anthranilate synthase component II [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLLMIDNYDSFTYNLVQYFGELGEEVRVARNDQITLDEIAAMRPDRICVSPGPCSPAEAGISVPVIQAFAGKLPILGVCL
GHQAIGAAYGGDIVRAQQIMHGKTIAITHTGTDIFTGLPSPCTVIRYNSLTIDPATLPDCLEVTATAPDGDIMGVRHKTL
PLYGVQFHPESVLSEHGHALMRNFLTR
>SEQF1086_CAE43530.1 anthranilate synthase component I [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTELEFKALAAQGYNRIPLVAETYADLDTPLAIYLKLAHSGPQGGRMSCLMESVVGGERFGRYSFIGLPARTVIRASGST
TEVLQDGHVAETHEGDPLAFIESYQARFKVALRPGMPRFCGGLAGYFGYDTVRYIEQRLGPAVKPFPDGMEEGTPDIMLL
HVDELVIVDNLAGRTYLMVYADPAQPEAYSHAQQRLLELRARLRRPVEIPYSYASMQTEERRDFQKADYLAAVARAKEYI
AAGDVMQVQVGQVIAKPFRDAPLSLYRALRSLNPSPYMYFWNFGDFQVVGASPEILVRQEQIDDQGETRSQITIRPLAGT
RKRGGTPEEDLALAAELQADPKERAEHVMLIDLARNDVGRVAEIGSVRVSDTMVIERYSHVMHLVSNVAGKLLPGMSSMD
VLRAAFPAGTLTGAPKVRAMEIIDELEPVRRGIYGGAAGYLSYGGEMDVAIAIRTGVIKNGTLYVQAAAGIVADSSPEAE
WAETEAKARAVLRAAEQVQHGLDEPI
>SEQF1086_CAE43531.1 putative phosphoglycolate phosphatase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHTINAVLLDLDGTLLDSVPDLAIAANAIRRDLGMAQLPEALVATFVGKGVDNLVRRALAGSLDGAAPDEALFARGRLSF
FKHYHAVNGAHATVFDGVKAGLAAMREQGLPLAVVTNKPTEFTLPLLERTGLAGFFRLVVCGDTCARRKPDPDQVLHACD
RLGVAPAQAVTIGDSVNDALAGRRAGTAVLAVPYGYNEGMDVRSLDVDGIVDTLVDAAHWISQRNAKPQRTTAA
>SEQF1086_CAE43532.1 ribulose-phosphate 3-epimerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHIMPPEIANTMSTQPASTRIAPSILSADFARLGEEVRNVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPHVQVPID
VHLMVEPVDEIVPQFAKAGANVITFHPEASRHVDRTLALIRDHGCKAGLVFNPATPLHYMDYVMDKLDVVLLMSVNPGFG
GQAFIPATLAKLRDARARIDRWRAAGGQPILLEVDGGVKVDNIAEIRAAGADTFVAGSAIFGKPDYAQVIGQLRAEIARG
ETIAV
>SEQF1086_CAE43533.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNRERPVKPYDLTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGLGVVGQQPLL
APGETFEYTSGCPLPTPIGTMRGTYHCVGENGIPFEVPIAEFLLAMPRTLH
>SEQF1086_CAE43534.1 putative membrane-bound transglycolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRLLCLSLLSVLLAACTTPSQIPPETAPGGVPPAAEGPLVVPPLSALSDTPPRALAGRYQRVAWTELPNWESDDLSRWW
PLFLRNCKGLMRPTSGNLAAPARATPRAWQPVCAAAVDPSKAPAAGDSAAVRRFLQTWLQPWRIAGADGRPATNTVTGYY
EPLVRGSRRQGGRYQWPLYAVPADLLVVDLGSVYPDLTGKRVRGRLDGRRVVPYDTRAAIEAGDRKPPAIVWVDDPVDNF
FLQVQGSGRVQLTDGPDRGTTIRVAYADHNGQPYASIGRWLIDKGELRADQASMQNIRAWAQRNPSRVQEMLNANPAVVF
FREEAVVDPEQGPKGAYGIPLAPQRSIAVDAGFVPLGTPVYLSTTLPASDRPLQRTVFAQDTGTAIRGAARADFYWGYGE
EAGQQAGRMKQRGQMWLLWPKQAGEPSAR
>SEQF1086_CAE43535.1 putative monooxygenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPQIVICGAGIVGLASALALARRGQRVAVLAPRAPVPAAEPDRYHPRVYAISPASQQFLAGLGVWDAMPAARLTPVQAM
EIHGDGDGLVRLNAWQAAQPQLAWIVESGEIERVLMQAVQMFGIPWIAERCVGWRAGEVETDGGQRLRAELFVGADGAAS
PLRKAAGLRHDATPYDDTGLVTHLDAERAHHGTAFQWFRDDGVLALLPMPDTADGPQVFMVWSMRTPQAQALQAMEPAVR
AAELERLLACASQGRLGRLRVRSPVLGFPLTLERAQMVAPGIALAGDAAHRLHPLAGQGLNLGLGDVEALACAVGDREPF
RGPGDLRVLRRYQRARAEPVLAMRMATDGLHRLFGARGAPLAWLRNAGMQWVDAVPFIKRQLIEGASRN
>SEQF1086_CAE43536.1 putative thiol:disulphide interchange protein (periplasmic) [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGPSFSGAGMNFRITVWCAAAAVWSSGALAQDGAGQAAPGTPDKVYSTTGSAPAKPGDKVYSTRSAQAPDPQADAVKER
FAQRFEGFDVTAVRRTPYGLFEVQIGTDLLYTDEKVTWVMEGPLIDALTRRDVTRERQEKLSSVPFEELPLDLAVKQVKG
DGSRVMAVFEDPNCGYCKQLHRTLEDMDNITVYTFLYPILSPDSTTKVRDIWCASDPAKVWKDWMVRGQRPPTAECDAPV
DQWLALGRQLMVRGTPAIFFKSGGRVSGALPRDELEARL
>SEQF1086_CAE43537.1 putative 2-hydroxyacid dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAERYADWTTLGAQARVQVFRDALPSGPARAVALQPFDVIVAMRERTPFPAELIQALPALRLLVTTGMRNNAIDMQACAA
GGILVCGAPGSAEAGAATAELAWAHILALFKRLPQEDAAMRRGLWQTGMPQPLARRRLGVLGLGKLGSAVAQVGRAFGME
VVAWSPNLTDERAAQAGVTRVDKHTLFSTADVVSLHLILGESTRHIVDAAALSAMKPSAYLVNTSRAGLVDQDALLDALR
KGRLAGAGLDVYESEPLPPTDVWRTLDNVLLTPHLGYVNAENFQAFYANALEAVRAWAAGAPVHVLGGARG
>SEQF1086_CAE43538.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43539.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLTASPTAARTPAEEKARFEGNKLAKRLARETTRAIADYNMIEAGDKVMVCLSGGKDSYALLDILLSLQKRAPFAFEII
AVNLDQKQPGFPPEILPDYLRALGVPFHIETQDTYSIVTRVIPEGKTMCSLCSRLRRGILYRVASELGATKIALGHHRDD
ILGTFFLNLFYGGKAKGMPPKLVSDDGRHTVIRPLVYVPESDLIAYAQFKQFPIIPCNLCGSQENLKRKEVGRMIQEWDR
KHPGRSWNVFNALSRVVPSHLMDRDLFDFVGLKPTGVADAGGDTAFDQIDPEPDTAGPGCASDAPAGQADGMAEQRVVFR
>SEQF1086_CAE43540.1 dihydroneopterin aldolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPTRRIFISGLALDARIGILEHERRATQPLHIDAEFDIDIMRNVDDHDIHSVLDYRRLREAIVEECTQAHVNLIETLTEQ
VAARLLADFDEIRSLRLRISKPMAFSDCAAVGVEIQISR
>SEQF1086_CAE43541.1 putative oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRQFYDAVIVGGGPAGASCAIWLARLGLAPLLVEAGERLGGLGNDNPFTDDWIAVLPDVTGQQVAANIAASVAAAGVPVW
LRAPATAVRPCKGGVEVQLGGAGQDTVYGKSLVIASGVRARGLPGHPQQARWPGVLIGPGSPIVAQDYAGLTVAVLGGGD
NAFENFVYVRNRGARQVDLYARTVRAQQQWVARAGTEGVRVGPYRVDPAARTVDGRAYDLILVFYGWEPQADFADSLGLE
RDSRGYLRTDFATAQTSLPDVYAIGEVADRMHPCVVTSLADGVTAAKAIQRRWERPAPPR
>SEQF1086_CAE43542.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRMNDTPVIYRLEPHDPAGHRYRITLTVAEPAPEGQRLALPAWIPGSYLIRDFSRQIETLAARAGGRPVAVNKVDNHTWQ
VAPCSGPLQVDYTVYAWDLSVRGAHLDESHGFFNGTSVFLRVDGQENAPCILDLAPPRGIEGWKVYTSLPEAQGLPGAAR
RHGFGRYRAPDYDALIDHPVEMGTPQVIGFQAHGAEHELVFTGVAPRLDLARIAADVQRICETQIAFFEPRSKQAPFLDS
ASRYVFMTMVTGDGYGGLEHRASTALMASRKDLPVLGQQGQGEGYRGFLGLVSHEYFHTWNVKRIKPAAFAPYDLERPDL
TRLLWVFEGFTSYYDDLLLLRSQTITRNDYLRLLGKTISGVARAPGRHKQSVAESSFDAWTRYYKQDENSPNALVSYYTK
GSLVALGLDLLIRRDSGGVHSLDDVMRLLWRRYGRDFYRGRPQGLAEDALPTLIREATGVDARRFIARHAHGTADVPLAE
MLAPHGISLTWQAGANIPTLDVRTRKQGEALALATVYEGGAAHKGGLSAGDVLVAIDGLRVDAPAGLDVLLSQYHPGDRV
TVHVFRRDELRSFQVRLAAPAPLDCVLAAA
>SEQF1086_CAE43543.1 putative enoyl-CoA hydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSFMRISYISYSDRRQSMSESFVLVETRGRVGWLTLNRPKALNALNDQLMEELGAALLALDADDGIGAIVITGSEKAFAA
GADIGAMKDWSYMDVYRSDYITRNWETIKRVRKPVIAAVAGYALGGGCELAMMCDIVIAADSARFGQPEIKLGVIPGAGG
TQRLPRAVGKAKAMDLALTARMMDAAEAERAGLVSRVVPADRLADEALEAATVIASMSLPSVMMAKECINRAYEVPLNDG
LLFERRVFHSLFATEDQKEGMAAFTEKRKPDFKHR
>SEQF1086_CAE43545.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE43546.1 putative inner membrane ATP synthase protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGLVAAAIAGVVAGTAAGLSALAGAGAYFLPNALFALRLLVNVVRAARPNPFAFLYGELLKLLMTALLLWLLSWLAQGWL
VWPAVLLGLVFTLKGYLLLLMLRKRS
>SEQF1086_CAE43547.1 ATP synthase A chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAPSGASPQSEYIQHHLVHLNNIGEKQSVIAQFNVINYDSLFWSILMGLLVVFCLWLAARRATAGVPGRFQGFIEMIVD
MVDDQAKSIVTNAKSRLFVAPLALTVFLWIILMNALDLLPVDLLPSIWRMTGLGAEHGDPLYYHRILPTADLNVPMGMSL
GVLLLMFYYGIKIKHPGGFVKELFTAPFHAHGLASLVLAPFNLLLNLIEYAAKSVSLGMRLFGNMFAGELIFMLIALLGG
AWTGFNGASIGLGIGHVLAGSVWAIFHILIVLLQAFIFMMLTLVYIGQAHEGH
>SEQF1086_CAE43548.1 ATP synthase c chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTNVAFVALACGLIIGLGAIGACIGIALMGGKYLEASARQPELMNALQTKMFLLAGLIDAAFLIGVGIAMLFAFANPFVG
>SEQF1086_CAE43549.1 ATP synthase B chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNLNATIFFQMLVFFVLGWFTMKFVWPPLTKAIDERRQKIADGLAAAEKGKADLAQAQARVSLIEASAKSETHARIIEAE
KQAASMIEQARREAEAERARIVAQAAQDAAQEVQRAREALRDDVAALAVKGAEQILKREVDARAHAELLNQLKAQL
>SEQF1086_CAE43550.1 ATP synthase delta chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAELSTVARPYAEALFGAARDDKAGLAVWADLVSEMAQVAANPDVREAMADPRLDDKQRSEVFTGLIKSQLPQAARNFIE
LLVKNDRLLLLPVIATQFVALKNRHEGTAQAEITSAFELSDAQVKELIAALELKFGLKLKPHVSVDQELIGGVRVAVGDQ
VLDTSVKAQLARLRDTLAA
>SEQF1086_CAE43551.1 ATP synthase alpha chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQLNPSEISELLKSRIEGLGASTDVRTQGTVVSVTDGITRIHGLSDVMQGEMLEFPNNVFGVALNLERDSVGAVVLGDYT
GVSEGDQVKTTGRILEVPVGPELKGRVVNTLGDAIDGKGPINTTQTDIIEKVAPGVIARRSVSQPLQTGIKAIDSMVPIG
RGQRELIIGDRQTGKTAVAVDTIISQKGKGVTCVYVAIGQKASTINNVVRKLEEHGAMEYTIVVAAAASDSAAMQYMAAY
AGCTMGEYFRDRGEDALIVYDDLTKQAWAYRQVSLLLRRPPGREAYPGDVFYLHSRLLERAARVNEEYVEKFTNGAVKGK
TGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETDLFNAGVRPAINAGISVSRVGGAAQTKVIKKLSGGIRTDLAQY
RELAAFAQFASDLDDATRRQLERGKRVVELLKQPQYQPLQVWELAVSLYAVNNGYLDDVDVAQILAFEKSLKDHLKAKHA
ALIQRIEDTKELSKDDEAELAAAVQDFKKHGAF
>SEQF1086_CAE43552.1 ATP synthase gamma chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPGIKEIRTKIKSVQNTRKITKAMEMVAASKMRKAQERMRAGRPYATKVREIAAHLMQANPEYSHPYLVEREVKAVGVVL
VTTDKGLCGGLNTNISRVTLSKLKEFEQRSIKVQATAFGNKGLGLLTRIGAKLVSQEVQLGDKPDLDRLLGAIKVQLDDY
LEGRIDALYVATTRFVNTMKQEPVFLRLLPLSNGLDDPFQSGVETLAKTAEIKSDYSWDYIYEPDAKSVIDDLLQRYVEG
LLYQAVAENMASEQSARMVAMKSASDNAKKVIGDLQLVYNKTRQAAITKEISEIVGGAAAV
>SEQF1086_CAE43553.1 ATP synthase beta chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNGTIVQCIGAVVDIQFPRDNMPKIYEALTLVDEGSSFAEKGLTLEVQQQLGDGVVRTIALGSSDGLRRGMQVAGTGAP
ISVPVGHGTLGRIMDVLGRPIDEAGPIASDEKRAIHQPAPRFDELSPSVELLETGIKVIDLVCPFAKGGKVGLFGGAGVG
KTVNMMELINNIAKQHSGLSVFAGVGERTREGNDFYHEMEESNVLDKVAMVFGQMNEPPGNRLRVALTGLTMAEKFRDEG
RDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSIQAVYVPADDLTDPSPATTFQH
LDSTVVLSRDIAALGIYPAVDPLDSSSRQLDPQVVGEEHYQVARGVQQTLQRYKELRDIIAILGMDELSPEDKQAVARAR
KIQRFLSQPFYVAEVFTGSPGKYVSLAETIRGFKMIVDGECDALPEQAFYMVGTIDEAFEKAKKLQ
>SEQF1086_CAE43554.1 ATP synthase epsilon chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATLHVDVVSAEEAIFTGEAKFVVLPGEAGELGILPGHTPLISRIRPGTVKIVRADEGEENIFVAGGILEVQPGSVTVLA
DTAIRAADLDEARAVAAREKAEEALRNAKDKADIAVVEAELAMLAAQAVAARKLRQGRTH
>SEQF1086_CAE43555.1 hypothetical protein BP3290 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRALLECAVLVMPDQPSWVGAWLAAVRGPEARLADRLRLHEYPLLSGGRDGLALGQAAMSLRRFDALLLPVQASTLGWAR
LVLAQASPALSTPVLVLVRDLTAPAIADLLHLGARDFLRVPACLEELRVRASRAWRAIPPPAAGARAAVPVPGAEPGGGP
GPDAPADPGEGGGYRLPGMPETADASAAAPCMLAQTRAPYAATLGDVRMAVQRELPFRQAKAQVVGRFERAYLRGALARH
GGNVAQAARAACKHRRAFWALMRKHGIDARPYREGVAGAWPYETAPPRDPADEA
>SEQF1086_CAE43556.1 uroporphyrinogen decarboxylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSVAPLKNDVFLRALLREPVPYTPIWLMRQAGRYLPEYNATRARAGSFMGLAQNPDYACEVTLQPLARYPLDAAILFSDI
LTVPHAMGLGLDFAPGEGPRFAHPVRDESDVAKLAVPDMDSLRYVFDAVRTIRRELDGRVPLIGFAGSPWTIACYMAEGR
GSDDYRLIKSMLYGRPDLLHRILEINAEATRHYLNAQIDAGAQAVMLFDSWGGVLADGLFQQFSLAYTRRVVEGLTRERE
GRRVPVIVFTKGGGQWLEEIAACGCDAVGLDWTVNLGAARRRVTDAVALQGNLDPMTLFGGAQAVRAEARRTLDAFGPVG
KGGHVFNLGHGISQYSPPEVVSELVDEVHTYSRALHAG
>SEQF1086_CAE43557.1 putative primosomal protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRVALDVPLPGPFDYRSAAPLPLGARVIVPFGRRKLVGVVVEHPGQPSIDPAQVREVEQPLEDLPPMPADWMRLARFAAD
YYQRPLGEVMLPVLPPPLRKPSAYQGKRSGLGPVARLDARKPRAAAAVAAEPDQAPELNEAQREAVDTIGALSAFQPVLL
HGVTGSGKTEVYLHAAARVLQAGRQVLLMVPEINLTPQLEGALRARLEALVGPQGVAILHSGLADGERVQAWARAQRGQA
RLLLGTRMSIFAPLPELGLIVVDEEHDPSYKQQEGLRYSARDLAIWRARDLDIPVVLGSATPSLESWQHAERGRYLRLTL
PGRARASSLPEIRLIDTRRLQLKQGLSPQFIEAIGQRLERGEQSLVFLNRRGYAPVLHCASCAWVSHCPRCSTFTVLHRG
PGAGGYRLQCHHCGYQAPVPRACPECGDQDLEPMGRGTQRIEEQLAEWFPQARIARIDADSTRRKGSAQALFAAVHAGEV
DIMVGTQMVAKGHDFARLGLVGVLNADSMLFAHDFRAPERLFAQLMQVAGRAGRHAAGAQVLIQTGYPEQPVYQALLRHD
YAGFARHALQEREDTGLPPFAYQALLTAEARELTVAQGFLQRARDLATGEPWPGVDAITLYDPVPLRVVRVAHVERAQLL
IESTSRPALQGFLTAWAACLPQLAVEARVRWQLEVDPLEI
>SEQF1086_CAE43558.1 ATP-dependent DNA helicase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSASDTSIGSGLNPSQKEAVLYLDGPCLVLAGAGSGKTRVITQKMAYLLRECGYMGRNIVALTFTNKAAREMAERVKTLV
DPKLAKGLTISTFHALGVRLLREEAAHAGLKPQFSILDADDAMSIIQELLATTDRGRLREVQSIISLWKNALLTPDQAAA
AAITPTEVEAVTVYRGYAATLAAYQAVDFDDLIRIPAELLERNKEVRTRWQNRVRYLLVDEYQDTNVCQYRLVQLLTGVR
AMFTAVGDDDQAIYAWRGATIENLAKLTTDYPNLKLIKLEQNYRSVQRILAAANNVIERNPKLFEKKLWSDLGHGEPIIV
SPMNGDEHEAESIAMKVSAARFERQAQWKDFAILYRSNHQSRVLEQALRNLKIPYTISGGQSFFDKAEVRDILAYLRLVA
NDEDDPAFIRAATTPKRGIGQGTLQTLGQYAAQRQCSLLAAVDEAGLESLLAPRQLEPLRTFAEFVRRIQWRAGRGVEGQ
PARAPEPAGQILDDLLSAIQYERYLYDMLEERPAQTRWQNVLELTGWLKRKAEEDGMTLFDLVQHVALVTMLERGEEEEP
DAVKLSTLHASKGLEYPHVYLAGVEEGLLPHLGKDDEDSGDPARAAETLATRIQEERRLMYVGITRAQRSLNLSWCKKRR
RAREDVVREPSRFIEEMGLGDAKVQEDEATRAMSPKERLGMLKALLKKD
>SEQF1086_CAE43559.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE43560.1 putative peptidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTTLPDTDQLVAGIQSWIQCESPSNSPAGVTAMAHLAAEYARAVGLAVEIRPLNAEVGPLVHATNRAAGDTRPGVLILG
HIDTVHPIGTLQDNPCRIDGDRLYGPGSYDMKAGIYLALSALRGLPSPDATALPVDFLLVPDEETGSHASREHIEHYAAR
AKYALVCEPARPNGGKCVTARKGTGMLRLNVKGRPAHAGMQHEKGRSAIREMAHQVLELESMTDYERGITVSVGTIAGGT
VTNTVPAQCRCVVDFRVPDMGATEDVLRRMRNLCSVGPDMELDIDVELNRPPMVKTEAASALLQLAQDFAAQAGFALEDA
PMTGGGSDANFTSAMGVPTLDGLGADGDGAHTLNEYILVSTLAARMRFWELLLKELH
>SEQF1086_CAE43561.1 hypothetical protein BP3296 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPADLTNADRIALELGHAGRNAIPYLDDDRNADRPFTLNTYRPYGYTPDRPVVVVQHGVLRNGADYRDFWIPAADRHKL
LIVAPTFSDEIWPGVESYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPH
APFHAVTAANPGWYTLPTFEHRFPEGLDGVGLTEDHLARLLAYPMTILAGDQDIATDDPNLPSEPAALRQGPHRYARARH
YYEAGRRAAAQRGLPFGWQLQVVPGIGHDGQAMSQVCASLWFDGRMPDAAELARLAGSQSA
>SEQF1086_CAE43563.1 putative binding-protein-dependent transport permease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MANPPSNGRTRTVHPLSETPRRAQILKKLHSRPTVRGSVIALLALVALILLAPYFAPQNPYDLASLNLLDGRLPPRSPTM
DGGFYWLGTDDQGRDMFSAILYGLRISLLVGLTAVVLATAIGSLVGLLAAYAGGVIDAVLMRIVDFILGFPTILVALVLL
AMMGRGVDKVILALVVVQWAHYARIMRGRALQERRKEYVEAAANLGFPAWRIMLFHLLPNCMAPVMVFATIQIANAIVLE
ATLSFLGVGVPVTEPSLGLLIANGFQYLLSGDYWINLFPGLALLLLILSINIVGDRLRESLDPRRA
>SEQF1086_CAE43564.1 putative binding-protein-dependent transport permease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALFILRRLIQSLFVLLAVSVVVFFAVYAVGDPIELLVSPEASAEARQAMIARLGLDLPVWQQYGNFLWRALHGDLGNSF
VHGIPAISLILQRIPATFELVLVAIVLTCTIGIPLGLVAGLHRDRPLGRGIMATSVLGFSLPNFWQGMMLILLFSVWLGW
LPASGRGDTANLFGVPLSILTLDGWSHVIMPAINLAVANVALVLRLTASGVVEAQSQEYVKFARAKGIKPGRIVRRHILR
NILIPVVTVIGMEFGHLIAYSTITETVFAWPGMGKLLIDSVYQLDRPVVVAYVMLVTLIFVVINLVVDILYAALDPRVQL
VAPAQ
>SEQF1086_CAE43565.1 hypothetical protein BP3300 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRPYAFQRAVVVTPIQFEPLSGVAMSPPPAVAAVRPFELACPRLDAERVGNGATPGVWHFDAGLPGRHVLLTALIHGNE
LCGAWALKDALAAGLRPRRGKLTLAFCNLAAFDRFDPLNYAPARFVDEDMNRVWSADKLASPDTQERRRARALLPWVEQA
DWLLDFHSMSNADEPLQLTGTQPRNIELALKLGNPAHLVADAGHAAGVRLRDYGRFGAEGENGTRSLLIECGFHGAPTVA
RDILARFLLEAGTLAADDIPPGWLADAAPRQRALRVTHAVAARSADFRFAQPWQGLERIARAGTVIGWSDGEPVATPYDD
CVLIMPSLANLRPGVTVVRLAQPI
>SEQF1086_CAE43567.1 hypothetical protein BP3302 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDLTLSHNARLTDSLERELLRGAMEDQSNTIRPLAAVKAAAVGVGRGVRAVFAFIDEVNESMNRARAQSAHYTGSQW
>SEQF1086_CAE43568.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDTPTSSSLPAIERQHLPALFAARPTDAHKGSCGTLGVIGGGPGMVGAALLAARAGLKVGAGKVLVGLVADTPPLPCDPM
QPELMLRDFRGLLEAGLGIDAWTAGCGCGMDALAANALSELFQLRGDAALVLDADGLNLLAAGAVQARWGDAPVVLTPHP
AEAGRLLGLSTEAVQADRPGAARALAARYGAWIVLKGAGSIVCDPAGACRINRTGNPGLATAGTGDVLAGILGSLLAQRI
APEQAVPGAVWLHGAAADALVTHGVGPIGLTAGELADSARRLRNSRA
>SEQF1086_CAE43569.1 putative enoyl-CoA hydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSETDTNPEHYARYRALRIRRHPEGILELVMGAKDASGKLSTADERLHRELADVWRDIDTDDQTRVVVIRGEGNGFSGGG
DLGLVQQMAEDFEVRTRVWREARDLVYNIINCNKPIVSAMHGAAVGAGLVAGLLADISIAARDARIIDGHTRLGVAAGDH
AAIVWPLLCGMAKAKYYLLLCDAVSGEEAERIGLVSLCVDRAELLSKAFEVAGRLAAGSQTAIRWTKYALNNWLRMAGPS
FDTSLALEFMGFAGPDVHEGIKSLREKRAPDFR
>SEQF1086_CAE43570.1 putative enoyl-CoA hydratase/isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNSLLTERDAAVLTLTINRPERRNALDTATYDALAAQLRAADADTGLAAVILTGAGDHFTAGNDLRDFQAERAAGDSPAL
RFLRALVDTDVPVLAAVEGHAVGVGVTLLQHCDFAFAAGTARLRMPFVALGLCPEGASSLLLPRLAGMRKAAEWLLQGRA
FDAAEAHAAGLLTGVTEPGQALAAARAVAADLAAQPRQALRVSKRMLRQADRAAIHATLDHEAEQFRERLRSPEAQQAFA
RFFNK
>SEQF1086_CAE43571.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNARDTAMPHPVVAELYASMTLPVVCSPMFIVSNPKLAIAQCVSGVMGSFPALNARPQSLLGDWLDEVEAGLAEHRRAHP
DGIVAPYAVNQIIHQSNDRLEHDLDVCARHRVPYIITSLRAPGDLVAGVHAWGGKVFHDVTTVRHAEKALEAGVDGLILV
CAGAGGHAGTLSPFALVSEVRRFYDGPLVLSGAITSGQGILAALATGADFAYMGTRFIATAEANASEAYKQAIVDASASD
VLYTPFFTGIPGNYLKASIVAAGLDPADLPAAEAASSNFGTTRAKPWKDIWGAGQGVGGIASVLPARELVASLRAEYAQA
QARLGARNLG
>SEQF1086_CAE43572.1 putative TetR-family trasncriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADAPAPAPKRARAGRPPTLAAPRERILEEAARLFARSGYENSSVADLAAAIGVSKAALYHYFPTKQDIYDAIILETLAG
LLQAVTREVERQHEACERLRAFMVGHARYFARHHEQFVTMLIGYSGMALPERADAAQLRDRYEQLLRDLLEQGMAAGTLR
RLDVAATGRAVLSMLNWMVRWYKPGQGDSAEQIADGYYDLLFNGLRI
>SEQF1086_CAE43573.1 putative acyl-CoA dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALDNETLNLLLDAVRRFVNDRLVPAENELAETGRIPDEIVQEMRDLGLFGLSIAADYGGLGLTMEEEVRVVFELGQTSP
AFRSLAGTNIGIGSQSIVLAGTDDQRQRFLPKLASGELIGSFALTEPDAGSDAMALRTSAVRDGDHYVLNGTKRFITNAP
VAGLFSVMARTAPERRADSISCFLVEAGTPGVTLGKPDKKMGQAGALTCDVVFDNCRVPAEALLGGKEGTGFRTSMRVLD
KGRLHIAALCVGIAERLVRDAVRYALERKQFGQPIAEFQLVQAMIADSQTELYAARSMVLDAARKRDLGQNVTMEAACSK
LYATEMVGRVADRAVQIHGGAGYISEYAVERFYRDVRLFRIFEGTSQIQQLVIARETLKAYA
>SEQF1086_CAE43576.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQVPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHT
>SEQF1086_CAE43577.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNNHKHARLTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKWLARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFA
QQRRQRLPLWRIAREAGRSLATVARYMERIGLSRLASLEPPAPVRRYERASPGELLHIDTKRLGRIRGVGHRITGDRAQN
RNRGIGWDAVHLAIDDFSRVSFARILDDEGGDQCAEFLRQATAYYASLGVRIDRVMTDNGSGYVSRTFRAVCVELGIRHI
RTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQPFIDRYNWYRPHSALGHQPPITRIPDVNNLLRIDT
>SEQF1086_CAE43578.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE43579.1 putative blue copper protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQSDQRGSNMRARVYAVRMAAAACGISFGAAASGAHGGGHGGGHGAATAGATAIGKPGVASKASRTVNVDMTDAMRFTP
DQIEVKAGETVRFKVTNSGKIRHEMVLDTDADLGAHYQMMLKDPGMRHEEPNSVSLDAGKSGEIVWQFDKAGRVAFGCLE
PGHYPAGMKGAVSVK
>SEQF1086_CAE43580.1 copper resitance protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRAVSNQRRRFVQGLAGGGVLAGLGLWRQAAWAQPGAAQPEVLSGTEFNLEIGRTPANFTGAARMATTVNGSIPAPILR
WREGDTVTLRVTNRLDEDTSIHWHGILLPTGMDGVPGLSFPGIRPGETFTYRFQVRQSGTYWYHSHSGFQEQTGLYGAIV
IEPRRADPVRAERDHVVLLSDWTDEDPMSVFRKLKVMPDYYNYIQPTVDNLIDDARKQGWASTLGERLMWQQMRMNQTDL
ADVSGATYTYLANGKSPAGNWTGLFKPGERVRLRFINGSAMTYFDVRIPGLKMTVVAADGLPVRPVEVDEFRIAVAETYD
VIVEPAEDRAYTIFSQAMDRSGYARATLAPREGMQAEVPALDPVQVLTMMDMGMAHDMPGMDHGAAGQQGAAMDHGAMGG
MDHAAMGHGSSEASGGMVEVRHPYPAEHGPANSMLPDIVTTRLDDPGVGLRDNGRKVLTYADLRSMVEPEDNRAPTREIE
LHLTGNMDRYMWSFNGLKFSQAKPIVLKYGERVRFVLVNDTMMTYPIHLHGLWSDLESPDGNFQVRKHTISLNPAQRISY
RVSADARGNWAYHCHLLYHMEAGMFRAVVVE
>SEQF1086_CAE43581.1 copper resistance protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPNFSIDRKRLAGMAASLGLAAAAAAASAWAQAPAMDHGSMPGMDHGAAPAPAIGALPSSDGAGDQSYAAYGIHSHMMDD
MVTSQLLFDKLGMTYDRDRRTGLQWDGQFWVGRDLDKLWIKSEGERVGGRSDGKVEAFWNRTISPFWDLQVGARRDFGTG
PKRNWGAIGLQGVAPYNIETEVTAYVGGSGRTALALKAEYDLLLTQRLVLTPEIEASVYGKDDKARGIGAGLSDASFSLR
LRYEITREVAPYVGVSFGRKFGKTASYASEEGESRSERAIMAGVRIWF
>SEQF1086_CAE43582.1 putative enoyl-CoA hydratase/isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSASLPLTITRQPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHREQVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLL
RMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVLGTRRFRDIVGADQALSILGS
ARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRATLHRVLRDDHDDADLAALARSAAQPGFKARIRDYLA
Q
>SEQF1086_CAE43584.1 putative IclR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRCKGIRHMDKTLLKGLTVLEAISRLDGATPTLDQIAEEIGLTRSNTHRTLQTLAHAGYVRRDPATGSYQCTLKLFELGA
RQLASLDARKLAPPFMDELARLTNETVHLSVLDGLDVVYVDKLDSPQPLLAYSTVGGRAPAYAVATGKALLACQTADYLD
HYGAAIKRHTEDTHVSLLALKQELADVNRIGYAINRGEWRQGIGGIAAPIFNGLDKAVAALGISGPLERLTNQKMREYAP
LVQQAARQLSAHMGYRGGYFGGAA
>SEQF1086_CAE43585.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSERLLNTVVALGQLVERTGLQEAAILAQARQLIAGLVAHDDWLPDEMAQPHPEYYRQYLLYGDPRDRYSLVSFVWGPGQ
KTPVHDHTVWGVIGMLRGAETDQPFRRAADGRLAPEGPGKVLRPGDVACVSPSIGDIHQVSNAYDDRVSISIHLYGGNIG
RIRRSVYDPQTGASKAFVSGYSNAMTPNLWAAPNAG
>SEQF1086_CAE43586.1 putative amidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLTIAALASAYRTRQTTPSATLRDLLDRIAASPLNSFISVDPETVMRQAADADAAFAGGAPAGALHGIPVAVKDLIDVAG
MRTTMGSQQYANQASAERDAQVVARLRAEGAIIVGKTNTHEFAYGPTGDRSYFGAACNPRDPARMTGGSSSGSAAALGAG
LCAAALGTDTSASIRLPAALCGVVGLKPTYDLLPRAGAFDLSQTLDHVGPMSATVRDNAVLLDALAGQPAHSYARLAGQS
VRGRTVGLATGFYLDYLDAPVRQALEQAQEAFRQAGAQVVPIEIAQVQAIYEAQQLVLKTEAYARHLRALTTNAPYQDEV
RARLLTGADVLAVDYLQAMAMRTVARRAFDEALAQVDVLLCPTCGLTAPLRDQRTTALDGQEYSTTWLLTRLTAPTNLSG
HPSLSVPFGADSQGLPISMQLIGRHLDEAVLYQFGQALEDAA
>SEQF1086_CAE43587.1 putative binding-protein-dependent transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIAFAPRTLAVASIAATVALAGCGQKEEQAAAGATPLRIGIIESVTGPAASYGDAHNKGTRLAVEEINKAGGFNGVPLEV
HGEDDKSDPATSINAAKKLITQRKVDAIVGSAASLVTIAFSKENEKYKVPLVNGMAGSPIITEQGFQYTWRIKITDNQLD
TKAIEHYVQNKNARKVAFLAENSDYGKPPTKAAADRARELGAEVVAYEEYNRGETDFKAQLTNIRDRAPDVLFVHGYYTE
GSIIARQIRELGLKTQLIVNEGQGVPKFQELAGAAAEGAVFPTTWLPGLSDARSKQFETAYQARYNSLPGAFDAGSYEAV
YTVVEAARKGGGTKPEQIQAGLAQLQGFETLLGPVRFDKKNQNDGSIRLARFNNGKIEPLQ
>SEQF1086_CAE43588.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43590.1 putative pterin-4-alpha-carbinolamine dehydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPAGGRGRGEFAMSTEFPMRIGAEVALPALQGWNAAAGRDAIEKRYRFDNFNAAFGFMARVAMFAEKMDHHPEWRNVYNR
VDVTLTTHDAGGVTELDVRMAQFMDEAAGRLGATGLPARADQPRT
>SEQF1086_CAE43591.1 putative inner membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAFGRSQRQVFKPSVYQPGKRTRRMPRWLVLLLVGIALGAGGVLFLQTNYGPQRLTVEQSEQLHTELSAANLERQRLQTQ
LDEAIGQRDANKSTHEQLTTDLAQARTRIDTLNQELLLFQDAMPPDPRGGDIGVRSAVFKRQPGQLSYQVLIMRENHAGP
AFKGNVTLAIEGNYANGRRGTLTPDPLALDLQRYNNTQGVLPLPDGFTPRSVTIRVLDGQQKQHAMRIYYVRG
>SEQF1086_CAE43592.1 putative nucleotidyl transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRAMILAAGRGERMRPLTDTTPKPLLAVGGKPLIVWHIERLVAAGLRDIVINHAWLGQRIVDHLGDGGAYGARLHYSAEA
AALETAGGIAQALPLLGDAPFLVINGDIWCDWDPAQARRQAAALDAAGAQAWLLLVDNPPQHPQGDFRLEDDGRVADDGA
PKLTFAGIGLYRPALFDPVARGSAAPLAPLLRQAMARRAVIGARHAGRWTDVGTPQRLAALDGQLRPEGT
>SEQF1086_CAE43593.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPGTSLPIRGRRDPETIETRCLNNDQDSRLALIHAWLQTLPGSLGLRPETMEPASSDASFRRYFRLQAAAGTLIVMDAPP
PHEDVRPFVHIDGLLREAGVNVPEIVAQDAGQGLLLLSDLGQDTFYQRIRAGISDAQLQSMYRDTLATLVRLQQASTAGL
PAYDGARLAAELELFPEWYVGRHHGVTLDDKTAAALRQIFGLLAAEGDTGHRVLVHRDFHSPNLMVCDEPRYGPNPGVID
FQDALAGPLTYDLASLVTDARTTWEEPQQLDWAIRYWELARAAGLPVDADFAQFHRAYEWMGLQRNLRILGVFARLNHRD
GKSIYLSHMPRVSGYVRQVAQRYGAFAPLLRLLDKLDDRQVQVGYTF
>SEQF1086_CAE43594.1 putative outer membrane (permeability) protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRMLRWLILSAFSVAGAVQAQGNQDSAAASAPSASIGAPVLRTSPGLRVHRLPDEKIPAFMEADQISGDPDSEVTLTGNA
QVRRVDGIIKGDRINYRRDTGDVDVQGSARMLRDGTLITGPSARLNVDTYSGEIQEPNFWIGASGGTAQARHADIFSKSQ
MRLSQVTYSGCPCPKPSWYIKADTVDLDFDENEGVARNGVLYFKDVPILASPYLTFPVKKERKSGFLMPTYGTTSNSGFD
ISLPYYFNLAPNYDLTLVPRYLSKRGAQLGGEFRYLGSGYRGVAIGTYLPDDNETGRDRWMYRTYHRQLLGNGFYTDWDI
AGASDDNYFRDISELGLNTASTTYLPRRGRVGWSSTYWQTYAQVYKYQTLQDPDAPLAPPYDKVPELWLKGARYDWGGFD
AEWVSTAVRFQRSLLNGRRLGPDGDRLQTYPTVSYPIGRPGWFLVPKVGVHYTQYRTDWYNRDWNRIGLSNYKRTESRTV
PIMSLDAGMIFERDASLFGKAATQTLEPRLYYLRVPYRDQSALPVYDTTLADFSFDQAFQENIYTGGWDRIANANQLTAA
LTTRWLDANTGFERLSLSAAQRIYFQDQEVTLPAEQPRKNVRSDFLVGATAALTDTLITDVAAQYNPYDNKWSRGMVSAR
WSPQRLTTVAVAYRYQRDPLPGISYQPQGQNQVSLAVQWPIHRRWYGVGRVDYSLRSEPATAAAAEQSPRVTQAIAGLEY
KGDCCWVGRVVYQRYAVSAADTNTALFFQLELTGLGALGTDPISLLNRSIPGYQSVVPPTPTGTTFERYE
>SEQF1086_CAE43595.1 putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMRSLHSLRRMSGTVLALMLAAGLPLSAAQAQPAKPAPKGDQKPATPAPSEQFVDGIAAIVNKDVITLREVREASKLASA
DLQKRGIQVPDERTLQKQVLQRLIMERLERQEADRMGIRVDEAQVDQAINMIASRNKITPAAMRAEIEKSGVTWEQYRKS
LRDDIRMDRLRQRAVDANIIISDAEVDAFLKDQERNPAAAQATRAPAPQQPQPQPRQPAQSGPAMLVLAQILVRVPEGSS
PDQVAALRKKAEGLLARAKKGDDFASLAAANSDGPEALQGGMMGARPLDGWPDLFVKAAGSLSAGQVSGLVQSGNGFHIL
KVVDRAGGGQPAQAARPAPAPAPQQPSSFQEGPSVAAPQGPVRVTQTHARHILIKTSTVMTDDQARQRLEQIRERLQGGA
VKFEDMARQYSQDSTAPQGGDLGWVNPGDTVPPFEAAMNALQPNEISPPMLSPFGWHLIQVLERREHDVSDEVQRMRARQ
LLFERRAVPAFEDWLEQLRSQAFIDNRLEKQERLEQNNR
>SEQF1086_CAE43596.1 dimethyladenosine transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAHQARKRFGQHFLTDESVVESIVRAIGPARDDRVVEIGPGLSALTRPLLDRIDHLTAVEIDRDLAARLRRQYPAERLT
VVEADALTVDFAQFGQGLRVVGNLPYNISSPLLFHLMGAAEQVRDQHFMLQREVIDRMVAEPGSGDYSRLSVMLQARYRM
EKLFDVAPEAFDPPPRVVSAVVRMAPLPADRLRPASDAAFETVVARAFSQRRKMLRRVLDDWAALTPWDELGIAPTARAE
EVGVAQFIGLADALLAAGAPGLARP
>SEQF1086_CAE43597.1 glycerate kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKIVIAPDSFKESLSAPDAAAAIARGVRQACPGAHTLCIPMADGGEGTVQAVLAATGGQWRETTVRGALGEPVRARWGWL
PDDATAVIEMAAAAGLELAPPAQRDPLRACSHGVGELIRAALDAGARRLIVGLGGSATNDGGAGMLTALGVRWLDADGRA
LAPGGAALADVRQVDASGLDARLRGVVVEIASDVDNPLCGPHGASHTFGPQKGATPEQVRQLDAALAHMAEIVTRAGHPD
QRAAPGADAAGGLGYAALAFLSARLRPGVEIVAELGQLAQAVAGATLVFTGEGRIDAQTLRGKTPAGVARIASAAGVPVV
ALAGSLGEGYQDLHAGGITAAFSLAPGPITLQQACEQAETLLAERARDIMQLWVAAGRRML
>SEQF1086_CAE43598.1 pyruvate kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFSSERAYMPVLRRTKIVATLGPATSTPERLDGLIRAGMDVARLNFSHGSAQDHRERVRLVRELAAEQGRFVALMGDLQG
PKIRIARFTDQQVTLQAGQPFTLSRSHSKEAGDATIVGIDYPELVQDCRPGDELLLDDGRVVLVVDSVGAEEVHTTVTVG
GPLSNNKGINRRGGGLSAPSLTDKDRTDIKLAAEMELDYVAVSFPRYGADIDEARALLRAAGSQAWIIAKIERAEAVADD
DALDALIRASDGVMVARGDLGVEVGDAELVGIQKRIIQHARTLNKVVITATQMMESMVASPMPTRAEVSDVANAVLDYTD
AVMLSAESASGQYPIEAVAAMARVCLGAEKHPTTTHSHHRLGETFTRCDETIALAAMYAANHFPGVKAIIALTESGHTPL
IMSRIRSGVPIYCYSPHGPTQRRAALFRGVYTVPFAPAEYDPADLSNAAIDELKKRGRVAAGDWVILTKGDFYRDSGGTN
GLKILKVE
>SEQF1086_CAE43599.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLNKLWLAFFLTAAAAALYRWLGLGEPDVFQAMVVSLFDMARVSVEVMVLLFGTLTLWLGFLRIAEAAGLVERLASLLGP
LFARLMPEVPRGHPAIGLITLNFAANGLGLDNAATPIGLRAMRELQSLNPNPDTASNAQILFLVLNASSLTLLPVTLFMF
RAQQGAADPTLIFLPILLATSASTLAGLLAVAFCQRLRLHDPVVLAWLGSAALALGAFMVMLAGMSAAAIAALSSLLGNL
TLFAVLLAFLVAGAWKKVPVYETFIAGAKDGFNIARDLLPYLVAMLCAIGVLRASGALDFALDGMRWLAHAAGWDTRFVD
ALPTALVKPFSGSAARAMMLETMSHFGVDSFPALLAAVMQGSTETTFYVLAVYFGSVGIVRARHAVGCALAADLAGVLAS
IGVCYWFFG
>SEQF1086_CAE43601.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE43604.1 putative ABC transport ATP-binding subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAPGLAIEGLGVAYGARTVIAGLSLGPLPHGTLTALLGPNGSGKSTLLKAVAGLLPARGGAIALDGQRLDQADLAQRAQ
QVAYLPQGLPADVHLRVFESVLVAARAHGGEAAGQIGPPAIAALLERLGIGHLALQFLDELSGGQKQLVGLAQALIRRPR
VLLLDEPLSALDPNYQFHVMDLLCQETRDHGLITIAALHDINIALRHADQALLIRAGELAAAGEPAAVIDAPMLARVYGI
QARVERCSRGHPHVLVDGVAGPVR
>SEQF1086_CAE43605.1 putative ABC transport inner membrane permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAEAAPDAVRAYGRLLRRRRWLMAALAAAACAALAADAALGPAGLTLADLWRTLLQPGAADTAARVIVWDIRLPQAAMAA
IVGMALGLAGAEMQTILNNPLASPFTLGVSSAAALGASLAIVLHVGVPGVAAPWLVPLYAFLFAALAGLLLDQVARHRAI
GAPAIVLFGIALVFTFNALISLIQFTASAQALQNLVFWTMGSMARADWASVGILALACALALPLALRHAWRLTALRLGET
RAASFGVDVRRLRLAALCRISLLAALAVAFAGTIGFIGLVAPHIARRLFGEDHRFYLPGSALTGALILSLAASVSKSLVP
GVIVPVGIVTSLVGIPFFVAVLLRRPQSP
>SEQF1086_CAE43606.1 putative periplasmic protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRDQALPLRTLVITASLALAAMAAPAHAFADDEARRAILDLRQQVQQQNEQNQRARLQLADQLQAMQQEIAQLRDQLELI
SRQQPNAQGGQPQHAGNPPGVTAVDQQEQAAYDGAIDLFRKGQYKDAAESLAAFIALYPNSQLAPTAQFYLGSSRYAMKD
FKGAIEQLNNLVQNAPTNARAPDALLVIAGSQIELNNRAGAKATLQRIVRDYPTTPAANTAKSRLQLLQ
>SEQF1086_CAE43607.1 putative peptidoglycan-associated lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKSRIAKSLTIAALAATLAACSSVPLDDKAGQAGGSGQGSASGQILDPFNPQSILAQQRSVYFDFDSYTVSEQYRGLVET
HARYLASNNQQRIKIEGNTDERGGAEYNLALGQRRADAVRRMMTLLGVSDNQIETISFGKEKPKATGSSEADFAENRRAD
IVYQR
>SEQF1086_CAE43608.1 putative TolB-like translocation protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTPAFRRADLTGFLRTYGAALILLLAAMLAWQPAQAQLRVDISGTGATQYPVAIADFAVDDTHGRALAEVIRADLTRTGQ
FRLINAAGSGLNVDSQVAHDDWRAKGADFLAYGSITRGPDGRYDVRYRLADTVKKGQLDGVAFSGTEQELRRVAHQIADR
IYEKITGVRGVFSTRIAYVLKRGSTYELQVADADGQNPQVALRSREPIISPSWSPDGSRLAYVSFESGKPVVYVHTLATS
ARIPVANFKGNNSAPAWSPDGSQLAVALTRDGLSQIYIVSAGGGSNMRRITRSPGIDTEPNFTPDGRSIIFTSDRSGGPQ
IYQTGLDGGDARRLTFNGGYNISPRISPDGSTLLYVARRDGAFRIASLNLSSGSETLLTDGRDDQSPSFAPNGMQVLYAA
IQNGRSVLAGVSSDGRVRQTLSVLNGEIREPTWGPFTR
>SEQF1086_CAE43609.1 Proline-rich inner membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTPPLIRSDRSAPPSPATQDNRKALGLAVLVHLLLLLVLIFGVNWRSENPGPVQVELWADGDSPVNPPPDEVKPQPKPEP
QPEPEPQPQPEPEPEPEPPPPPPPPPPPQPEVQPKEQPDPEIALEEARKKREQEEKARQAAEAAKEKARLEEERRQAELK
EKQRLEQERRAAEKAAAEKAAAEKQAAEKKAKEEAAKKAAADKALRDAFRNDALGAAGIPGGTADRNQAGGGRDSGYGAK
VRACVQPGVAYPPPPRAGSANPTAQYRVQLGSDGKVNGVTLTSSSGNPGFDRAVETGIRRCNPFPKPSTGRYEPIIDVVY
RMYD
>SEQF1086_CAE43610.1 putative TolR-like translocation protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPSVRSNGRAGRRMKADINVVPYIDVMLVLLVIFMVTAPLITPGLIELPSVGQAADVPAKPLEVQISEDGKIALRMREPG
ATPQDIARTELVNQVRSRITAETPVVIAADGKVPYESVVKVMDELRSSGITRLGLLVDQGAGAETQQPARKR
>SEQF1086_CAE43611.1 putative TolQ-like translocation protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQVTNDMSLLSLISHASVPVQLIMLLLLGISIMSWTYIFAKRLAIKRAHQQTRRFEDDFWSGGDLAMLQQAVATRRDEQG
ALARIFDAGMTEFLKARRTSAAGDVNAVLDGPRRAMRAAYQREMDSLESHLNFLASAGSVSPYIGLLGTVWGIMHAFIGL
SNMQQATLAAVAPGIAEALIATAIGLFAAIPAVVAYNRFTNDIDRLSIRFDSFVDEFLNILQRQVR
>SEQF1086_CAE43612.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDPKFSESVLDIRVYYEDTDAGGVVFYANYLKFLERARTEWLRGLGVNQSDLAEREHRLFGVHSLDMSYRKPARLDDLI
TIRSRITRIGRASIHFAQRAERNGELLAQGNIQICCVDSIRMRPAELPDDIRAKLKFIQIQE
>SEQF1086_CAE43613.1 prolyl-tRNA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRASKYHLNTLKEAPAEAEIASHQLMTRAGMIRKLAGGIYTYMPLGLKVIRKIEGIVREEMNAAGAIELLMPVVQPAELW
MESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARNEIQSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDA
YSFDRDEAGAQRSYDIMYAAYQRIFQRLGLEFRAVAADTGSIGGSRSHEFQVIADTGEDLIVYNPESDYAANIELAEAPA
LLATRAAPGQDLEAVPTPGAAKCEDVAKLLDLPLARTIKSIVLAVDQPEGPAQVWLLLLRGDHELNEIKAGKLPGLAGFR
FATETEILDHFGCKPGYLGPIKTARPVHVVADRTVANMADFVCGANREDYHYQGANWGRDLPEPELVADLRNVVEGDPSP
DGKGALSIQRGIEVGHVFFLGTKYSEALKATFLDDNGKPAVLQMGCYGIGVTRIVGAAIEQNHDARGIIWPRAIAPYEVV
ICPVGWGKSETVRDTALALYEALRARGVDVMLDDRDSRPGVMFAEWELIGVPLRVTVGERGLNEGVVELQARREAEAAKV
PVDQALAQTLAKLDLL
>SEQF1086_CAE43614.1 putative Nudix hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLDREGYRPNVGIILVNGKNEVFWGKRIREHAWQFPQGGIKYGESPVQAMYRELHEEVGLKPEHVRILGRTRDWLRYNVP
DHFVRREWRGHYKGQKQIWFLLRLVGRDSDVCLRATQHPEFDAWRWSQYWVPLDAVIEFKRDVYTQALNELAVILFRRHH
ETRYLRQRVHGPRSTDSPSSETDGHAHIAG
>SEQF1086_CAE43615.1 two component response regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRILLVEDERDMAAWLMRALAQSGFTPDHAPDARTAEGLMVGNEYDAVVMDLRLPDKHGLVLLREMRNRDDRTPVLLLTA
QGALQDRVRGLNLGADDFLTKPFALEELEARLTALVRRSRGRQPPRLQCGSLSYDGESRAFTLDGALLFLTPREHAALAA
LLTRSGYPVDKSQLFGKVFTHESEANPDAIEVVLHRLRKKLTGSDVRIVTVRGLGYMLESTVSESSES
>SEQF1086_CAE43616.1 N-terminal region of a two component sensor kinase (partial), partial [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLPGVVVLLVIDSWNDYRTLAAITNEAYDSALLEPARVLESSLEFAADGTLQVATPLYAQVMLESKGG
>SEQF1086_CAE43617.1 phage-related conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MCGRIAQKSAPEDYVEILWPNARLIFDDVAGPRYNIPPGTRPLTMHRLVDQAEALARLPWGYKPHGSRFFMVNAKLETIE
RHGWPWKLMIGVGRILVPADGWYEWRALDSGPKPAKQSYYIHGDAPLLFAGLSAWRRGAELDEAHGFAIVTNDALGGMVD
VHDRRPVALPPELAREWVDPATPVARAKEILRAGLPETAFSWYPVRQEVGSSKYQLPDAVDPL
>SEQF1086_CAE43618.1 putative phage-related hypothetical protein (partial) [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSWSRAYSARPGLHARRRAGGYYQGIIIEQLVKASRFQAGDRVLFGEDQVQAPATEADRARRPIRTPRRYRGW
>SEQF1086_CAE43619.1 phage-related hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPFRAPLTHDELRAIRERQPWNPDVLTLLWEVKRLRSMMLRAYQLSGEFHRPVGVLANCYDEYMAQLVVEPCVLERDADV
AEMLNAPAQPRKG
>SEQF1086_CAE43620.1 phage-related conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGAWRRSAVVALLSAALAAGAAWTAQGWRKDAAIARQAAAFALERDRQAQATVAALEAVREEGRRRTAAVEKARDDAQEL
AAAAAANAVGARAERDRLRTHANALARAAVARDPDAADGSPTGASAIDLLAYMLSRVSGRAEALAGVADRARIAGLTCER
AYEAVRGNVRP
>SEQF1086_CAE43621.1 putative phage lysozyme [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRPGRRIKGGVAALVASGVLVLASVRLMDFLGRWEGQGQQVVYADRLARGLPTMCKGVTKHTSPYPVVVGDYWSPERCAE
VERMVVSKGQLQLARCINVAISQPIFDALSSHAHNFGVPSTCASRAVGLINAGRLAEGCNALANAPDGAPVWSYVTDQRG
RKRFVQGLRNRRLEERALCLSGL
>SEQF1086_CAE43622.1 phage-related conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEPQPIVDKVAANVTYVGSGWAVIFGLSANEFAALVGAAVAVVGLLVNLWFKWQHLRIARTVAATRKQHEDEESCDLEEE
>SEQF1086_CAE43623.1 phage-related hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIGVGVCLWADSTLQSGGHASRLLLDGKPFDTRAPLSLGTQARISGGRGDESLSGPLAGGPARRVKGYLPALPDGKLVAR
FSSVAELTGVSDAWMGGTSVGSGRRAQVFHFRKIDDQKEVQLQIVAGQYTKAVKVRFYDDRDGIKAGVMYARYVEGSQLG
LDFDIIEARSQEIATAESEIGYGCAAISLVGIQEYVFLTYALDSDVILTVSGANTYIGTTTVESGTVRIGHPLAFGRNGL
IKVRAGAALDKHGYALPHRMIVNDGATVLE
>SEQF1086_CAE43624.1 phage-related hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKDRFILYQPSLGGPVNSAFAVTPSDTQDLREVTRALYLGAAGSMRVRFADGTEHTYAALAAGRHPLRVVRVFSTGTTAT
DITGEV
>SEQF1086_CAE43625.1 phage-related hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGFVKPRMGNFVMYDQIGRIHQATKGQAHRTQADARSMGLQVLEVDDLYSPDHYMVVDGKVVPRPASPITRRGLVLSGV
PATPEAPADLMIGQDGYYEVTDSRVELEFGEEGTHQITVKRWPYKDWVGTIEHAEDQL
>SEQF1086_CAE43626.1 phage-related conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPDITIRRDPFRPHLRQETVVARQGTRLDTILRREGFIVGRAARLARTSPFIVQRNGRWLLQAAWHVRLKKNDVVVVVVL
PAGGGGSNPLQVVAMVVLAAATAGVGAWATSAYAGAAGVGATSAAALTVGAGAATAVGPVGGMVVNSLFPPARLPGTLQR
EKASPTYTLSAQGNMARPMEAIPVRYGRYRSYLDFAAQPYTEMVNNQTHLYQLFCVGQGRYEIEEIRIEETPIGNFSEVE
YEVVEPGGQVTLFPDNVVTSAEVQGIELPAINVEGAGPKGPFAANPPGTLASEIAIDVLLPKELFYAAHDGTLESAGTGV
NVYARQIDDSGRPIGTTILLGKENIVAATLTPQYRTFRYKVEPARWEVSVERNSGHLAERATRMIRDVTWLGLRSYLPSK
RTYGNVTMLAVAMRATGNLNQTTARRINIIATRRLRTWDPVQGWSKDLKPTRNPAWAIADACTDREYGRGLPDSRINLAA
LYRLAKVWDERGDWFDGVFDVSTTFWEAVTQVARAGRALPIYHAGVIDVIRDEPKSVRTQMFTPANIVARSFSVDYVFPA
HDDPDYIIVEFVNERTWKDDEVECAWPGAAKRRPYRLRLVGVTGRVQAWREGMALLARNRDQRRFASFQTELEGAIPGYA
DLVEISHDVPKWGLSGIVEDYDPRALRLTTSEPLQWWQGQNHYISLRGRDGVPAGPFRVEPGTHEREMRIVDLVDGQGLY
VSTGEAEEPTHYTFGPGERRALLAQVMRAVPSEAGLWTLDVVNYAPSVHTAELGGQEPEFASPSLLPIVPLGPIVDSVTV
FSGPRPGQQIVSATPASGAYRYEFEASDDGGVHWQPLGMAELPSLEVYLRAGSWQVRVRGIGALSGPWKTWQGNVSASAA
PPPKLSALTTISQVMAIELAWTVPDAPWMSSVEIWESSTPNLGDASLMGEFRLPQSRFTRFGLSHGTRIWFWGRIRDVAG
QLGPWYPDGQGVLGSASSDAGKILDYLSGQIGPEQLTRDLTQTISGMERNINTVTAKLDQEREERLSQDGALARRVEDAI
AANGAGATAVKQTSAALASLDGRLRATWSVQAQVAQDGKVYAAGMALGAYAGEGGQVQTSVYFLADRFAFLNLANGKVSS
PFVIQNGQTFLNQAFIGKAWIKSAQVESLDVGKIVAGVMSADRINANSLIAKLASFTTAYVKTAHIGVAQVDTLRLASGA
VVTGSHSIISKSLWRGGSELATVAIGSLYLPYGGSVVVFMQYAQSGGRFPFGRNTIVSIDGEIIPNALSNPPDGVAMITW
ISDTLPEGKTISWSIKARHPVDGTYYISGRVAVLAIQR
>SEQF1086_CAE43627.1 phage-related conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTSDDVNRYIGLAWQFGARGPGAYDCWGLLRECREHYFGGGIPDTVFGEQARALYAEKMRTGGWEIVMQPEHGDGVLLRA
GNDPHVGIYLDLDGGGVLHAMEGRGVIFSPMRALVTMGFSQPTFYRIHA
>SEQF1086_CAE43628.1 phage-related conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLEKALKEAYASAPQDRVVFDTLELRHPAFVDEHGERTAVRVVLGYEDIYARLEAEAPLDGGKEVLFQAGAFRLRLPGF
EEGQVPSLLITIDGASEKIVDHVEAAVQSRYPIYATYRPYVSTDLSRPQMNPPITMELNKVTVTGASVSGTATLADVHNW
AFPHQRYMRERFPGLFR
>SEQF1086_CAE43629.1 phage-related conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLPHWPAGLPLVEFSRQPISPFQRTEMENGRARHRRHTRVHPVHAHVSFVLDREQYDVYQRFCSIDLNGYAGWFLMAMN
GPGGLKLRKVRWLLPVPREERIPGDLWRVSGELESMSDE
>SEQF1086_CAE43630.1 putative phage tail protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADEVASLVLRVDSTQAKGASADLDKLATSGAKAEQAAVKVGTAGKAAAAGLGAMGQAAKTAQAQAAAAAMTAGEMRLAM
RSLPMQMTDIAVGLSTGQSPFYVLMQQGGQLKDLFGGIGPAIKAVGGYVAALITPFTAAAAGAAALAVAYQQGAEEGRRF
TAAITLTGNAAGVTESQLAAMAKRISDIQGTTGNAAAALTKLVETGKIAGDSIEGLGRAAVLTEAATGRSVDEMVKDYER
IADAPAEALTKLNERYHFLTLAVYERVKSLQEEGRQQDAARLALTTYAQAMEERSNQVVKNAGYMERAWNAVKGAAKGAW
DAIADVGRPDAAQDVLNGLEREARQRRENIALAEQAGASVSKAERMSLAAAEACVALARDQMQTQSAIAKAQALDAQRSA
VGIAARDELNKLIAQGASNEEKRAKALEENEERIRRIRAGGGTVTATEEAASIAAINKQYEKRSAAVAGSVAAGVRELEQ
AREREAVLRAELETTGKITSDRQKLVAFEQRIADLKAKDQLTADEKSILANETANRQQLERNAGLADQIELQKEVVKLKT
LEASAQATLAADQDRYNDLLEGFTASPRVREQLQAQQQIYRDFQRQVRASEKEGLTPDALAARVQVLKLNLDQRLELLAR
HYENVGVLEGDWKKGAEGAFNDYAETVGNVASATRNAFADAFKGAEDALVQFVTTGKLSFAELADSVIADLMRITVRQSI
TGPLASVLGSVFSNAFGSALPATASWAMPELAGRRATGGPTLPRRLYEVAENGPELYDEGGRTYLLSGGDGGHVTPLSRN
AYRPSMPVTVNVHGVDSQPQVRARPDARGGLSIDLIFRQVKDRLAHDIDAGVGSLPRALERRYGLNRQLA
>SEQF1086_CAE43631.1 phage-related conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYRPMLDKAQLAEFGLRSDDFPAAVIELWPDNVMPKVVFEAMGSQWRIGFAGPTGLDYGALPGVMRMLGVPPEQETDVFD
GVRVMESAALRMMNKK
>SEQF1086_CAE43632.1 phage-related conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNIIFKLQPAPTFTVPVEIPRHGEEPANIKVTFRHKSRDEMKDFLERADKSDASQDIALVNEMIAGWDGPDMEFSDEAV
GLLIQNYQGAVPALVQAYSLELLQARRKN
>SEQF1086_CAE43633.1 phage-related conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKSGWPELNERVVRAVNTASNTFALEGIDTTKVGRFSKGQGIGTATPVSTWVDLSQVTNVAKTGGEQQFYQWRYVEDRNG
RQRQRPTYKSAKFITLTLDYDPALAWYEALKEADAAKDAVVLRAKLPNNDELYYLVYPSFDSDPSMELDANMQNTATFSM
MSDFTRYAPLAS
>SEQF1086_CAE43634.1 phage-related conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNEARITAERLRSVVHYDPETGKFTRLVRLAQRHNVGDDAAHATANGYQRVGIDGQRYLAHRLAWLYVYGAWPTQNIDHV
NGDRSDNRIANLRDVPQAVNMQNRRHPQADNKSGYLGVYWERGAKKWRSRVQVAGKAHEVGLFDDPAVAHAAYVAKKRKL
HEGCSI
>SEQF1086_CAE43635.1 phage-related conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQDLIRAAFEKRLKDWAKARTPELAVAWQNINFTPPSNAVYLRAYVLPAATISRDAAGDHRQYRSLFQVNVVMPIGAGS
RAAEQIQAELDALFQVNLIMPSGGLAVRVRTPISSGQPTTGDADHTVPISLGYDVQFYPE
>SEQF1086_CAE43636.1 phage-related hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSFTADLGKFAARAKGNIDTATRQATVLLAKGVILKSPFDTGRFRANWQFSAAGIQRATSMAVDPDGQVTLHRLVADIKQ
TRAGGVTYLSNSLPYAVPLENGWSKQAPQGMAKLTAQEFQRYVSQAAKDANK
>SEQF1086_CAE43637.1 phage-related conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATFDYADMAATAQELLLEFGGPVSVRQFVTGEYDPDLGQAPTTTVDNAGIGALFDYSAQAAGLANMAGSVIETGDKQMY
LAPALAAGGAMPEPKPADLVLALGATWRVVTVKTLAPAGLVLLYELQLRQA
>SEQF1086_CAE43638.1 phage-related hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MENFLRLVVPDPSGEPGLQECCGVQLYTADGMPISGLVAMKLESSTDRPIWRATLVMDINVSGKAV
>SEQF1086_CAE43639.1 phage-related conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPLLTRGFPSACGDIPMPLIVEDGTGLPNADSYVSVADCQAYAAAHGLAFAGEEAALEAALRNSALYLDGEYTYRGERAT
DTQALEWPRTVATGVPREVVNACCELAARALTGPLWQDVSSTTAGAAIEKTVGPITTKYASAAGARNDGQTRYAGVAAML
RRWLSSYGSSVKLVRC
>SEQF1086_CAE43640.1 phage-related hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQKTKLPVWYLPGPFYRYEQDVKAEAAKAGVRIVDANATGSRDGAAKEVPKVTLKPEYRSKGKAEAPKEKESDPQPKDP
AKT
>SEQF1086_CAE43643.1 phage-related hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPLDRNDPEVKALLEEVAAEATEALSAKNKELLAELRAAKAKAKGSEIDPEEHARLQTQVEELTGKLDKVTKDSARQIEK
LTKDLAEKDDALTQHLIDSGLSTALAKAGVAPHFMDAAKAMLRGQAAIKDGAAVIGDKPLADHVTEWAGTDQGKHFVTAP
ANSGGGGQGGNSGGKCTGNMGGSREDRVAALKVKFPELAG
>SEQF1086_CAE43644.1 phage-related hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPLHLVPDAPKPAETEKDRIRKRIKALPKPKDMIQCPRCGGREVIETRIGVFETARTWSGGTKVLLCVLCFMRGERVVLK
>SEQF1086_CAE43645.1 phage-related conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRYSNGVVRRIIALLNQVDSDLGEQITRAMGRLPASAFTVARLKELLKDVRTLNAEAYQQVRGELEKDLRDLAGYEIGYQ
GQLFDSLGIEFTTRGVTAGQVYAGAMAQPFQGRLLREWMAGLEAGRASRIRDAVRMGYVEGQTIQQVVQRVRGTRAKAYA
DGLLEIDRRNAEAVVRTAISHTAGFARDRWYDANDDIVGALAWVSTLDSRTSQMCRLRDGLRYEPDSHKPIGHKVPWGAG
PGRLHWQCRSTSVPILKGMEDDPLIGTRAAKDYRDSARGKGEQVRATTTYADWLRRQPAAIQDDILGPTRGALFRKGGVE
LESFYNDRGVYLTLAELRRKDAAAFAQAGVE
>SEQF1086_CAE43646.1 phage-related conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPVDSKHPLWLANQPRWERCRTALQGRDAVHAAGEKYLPKLAGQDKAEYDAYKGRAMFYGATARTEEALIGMVFRKEPTV
TLPAALQPMIEDADLAGTPVDTFIENVTKEVIDVTRVGVLVDYPVASGEFMTVGQAQAAGMRPYLATYKAEAIINWRTAR
VRGVNQLVLVVLAECYTDPKDEFTAEEKTQYRVLDLVDGFYRVRIYRTDLNTPAFEYTPMMNGKRLPYIPFVLIGRNGEA
IDPQKPVLLDLVDVNMSHYRGTADYEHALHFTALPTAVVIGHELKEGQALKIGSSEAWVFTDPQADAKYLEFSGQGLDSI
KVSLERKEGMMATLGARILAPEKRDAEAAETAKIHRAGENSVLGGIALGVGRSLAKAFRWAAEWAGAGSGTVEVKLNTEF
FPAGLTAQDLTALVGALQAAAISPQTFYDNMRRGSIIDDGVTFEEEQDRIEAAGPALGTLGGQDVKPANGAV
>SEQF1086_CAE43647.1 putative phage terminase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPTLNQPQARFLALPHKFRAFVAGFGSGKTWVGGAGLCRHAWEFPRVNSGYFAPTYGQIRDIFYPTIEEVAHDWGLAAKI
NESNKEVHLFAGRKYRGTVICRSMEKPGDIVGFKIGKGLIDELDVMKADKAALAWRKIIARLRHTAPGLLNGVDVTTTPE
GFKFVYQQFVKQVRERPELAALYGLVQASTYENGKNLPEDYIPSLRASYPPQLIAAYLRGQFTNLTSGSVYANFDRRLHH
TDAAEEPHEELHIGMDFNVLNMTATVNVIRAGLPLTVGELTKVRDTPEMARMLKERFKDKGHGVTIYPDASGGNTSSKNA
SESDLSILRKAGFTVRVNSRNPSVKDRINAVNGMLLNDEGARRWLVNTDRCPTLTEALEQQVYDKNGEPDKSTGHDHPND
AQGYFLVHRYPITPTGMSRIKLTGT
>SEQF1086_CAE43648.1 phage-related conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARPSKYQPAFAEQAAKLCRLGATDKDLADFFHVTERTLNTWKKQIPGFLQALNGGKVMADAEVADRLYQRALGYTHVED
DIRVCDGVIITTPTTRHYPPDTTACIFWLKNRRPDLWRDKPDPTNDDNAPPPVKVVIEVVNTSIPDADA
>SEQF1086_CAE43649.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43651.1 phage-related putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGRLLLRRCGGGQSSMGASLKVGIGSLAELLGQATNALLVSIRSQQIGPLQRKPLPSCEVENVAAVGRPQSVPAERRIG
DSYTFLIYAGGTRLKLFDRIALFLWRDRYDYDPTRGCPGEQNNISLWTRLRPARKRLIAVLLNGQLWLAFIGGMFALGAA
LLPGYLDRVKTDQQVNTNTGELLLRCVQEANHVLRCRPVSDEQDEIVSGVDGPSLDSNRPGRESPAQDVKHE
>SEQF1086_CAE43652.1 phage-related hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNLLLGLGGQLGPDAGPVAGTQITAAYFAAGGPLYRCAMLDRNRSAARAPLIDECRGHSDLARQRCSTGGVFPVEIAIQ
VHGPNYSVATVQTQAMLQNNLNSIAI
>SEQF1086_CAE43653.1 putative phage repressor protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRIGGVPAPWEPGGTTTRQMERHSQGLRISQAVNVGHVEDSGYSANDHEFIPIPELDVRLAAGKLGIENYQETEIGQILL
RRSFLESFKRPIKRMRICYGNGPSMEPVIRHRNPMLVDVHPVSLDEVQPRFVYAINRGGKMIVKCLERWKDGRWMAISTN
PDPDHHPFPLATDDGGEVRIIGTVLWSPYDLRNGVDERLLQGW
>SEQF1086_CAE43654.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYMNIDNTLIQAVVVAGVILLLILWICLPFAVFGVKRRLDRIIRLLEQQQSAPQPERRTDSEPFVSRSLR
>SEQF1086_CAE43655.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43656.1 putative inner membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTVPRPESIIPPAGNAATGAAGIARAFKRALVSQCHPNMLFAVLLPFLIALLGAILLLWLFWTPLNEWLRFEASQWQAIN
QVDDWMVAAGLFSLKIYLVPVIAAAILLPISGILGLAIAAVFVMPLVLRHVGGREYAGLARQGRNATAVSVWNALWVSLA
FGAGWLLTLPFWLIPPMVVILSVFWWAFAFTRMLRLDAIVEHASPAERAILLKRHNSGFWLIGLVCSLLNLLPPAWIILP
VFSGLVYAHYGLDALQRLRQERAIDV
>SEQF1086_CAE43657.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARPENGYAGYDSQTRCDLPTMPLHVPGSDIPTLRAALARSDAWLVACFCAAWCDTCQQYRPKLLELARARPGHTFAWID
IEDHPDLLGEEDVENFPTLLVQAHGKVLFYGPMLPHIGHLERLLDSLDPQGRPVATGLPDVARLLAAA
>SEQF1086_CAE43658.1 putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTESTSSDAPVTDAPTRTFADFGLHPLLLKLIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLM
PLANTSASPARHPVRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHVEQ
KNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQRQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATADTVTQ
IAYQMHGDTKRAAVVHLVKSRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKAGDLEVLVAT
DVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEERYLLDIEKLIKRQVPRGKLELPADLVAR
SHGRDRDAPRERGADRHRGERCTSGAAAPRQPVDELFYKPYEPANGQPASPETPEQEGRSNAPKRQLAVLLGGSRKG
>SEQF1086_CAE43659.1 putative conserved inner membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDRDLYVYGAILLLTLCSVLTRAGFMLFGDYIPLPDGVRRALRYAPAAALTAIVVPDLLPWKAGLGPAFDYKLVAGVLA
IMAFLRTRSAVLVIVVGMVALWGLRWLAG
>SEQF1086_CAE43660.1 putative inner membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MASDPATSALEDARQARQERADAFRAGVRAITPALIATGTWGMVTGVAMVKSGLTESMALAMTLLMYAGSAQLTSLPLIA
TGAPLWLIFAAGFVVNLRFLIFGAALHPYFRHMSWPRRLGLGYFTTDMGFVLFMPRFGDAAERGTREQLWFFLGTVAPGW
MVWQVTSIVGIYLGSLVPEAWSLDFAAVLALLAITVPLANSKPMLVSMLAAGMVAWVGQLLPLRLGLAAAVVAGIVAGIW
AERFFKGRT
>SEQF1086_CAE43661.1 branched-chain amino acid aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSMSDRDGFIWYDGKLVPWREATTHVLTHSLHYGLSVFEGVRAYETAAGTAIFRLQDHTNRLFNSAHIYQIPLPYDRDTL
NEAQREVVRANGLASCYLRPLAFYGSEKMGVSPKGAQVHVAIAAWPWGAYLGETALAQGIRVKVSSFARQHVNVTMPRAK
VATTYANSIIANAEALQDGYNEALLLDTEGFVAEGAGENIFIVKDGVLCEPEIASALTGITRSTIHALAADLGLRVVTKR
LTRDDVYIADEAFFTGTAAEVTPIREVDNRQIGAGRRGPVTEKLQQAFFDLVNGRNPKYQHWLTPV
>SEQF1086_CAE43662.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAAAQAAVPAHDAIEVGAEDLPVYCPGPKAPLWSMHPRVFLDVTHTGQASCPYCGAAYRLKPGTVVHGH
>SEQF1086_CAE43663.1 hypothetical protein BP3400 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFATPDEAEHAFYEALEHADLDRLMQVWSDDEEIACIHPGGLRIVGHTAVHESWQQVLANGPLHLRPLRPLVMQSMMCAV
HVLVEQVTVMTREGAQFANCYATNAYHKGPAGWRMVLHHASQAPAEAGVLDLHDFPDRLH
>SEQF1086_CAE43664.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAASRIDLTPCPVPPWLPDRHSQTVYAAALAQYHRIAFVRERVDTPDTDFVDFDWTGPGLFPHKTAEGAAPAGPAPQGNG
RIAAARWITATDWASLPQTADTPALILFHGLEGGSASRYAQSIAHYFRARGWIVVIAHFRGCSGVPNRLARAYYSGDSAE
VGFMLDTVRARIPHARWHAVGVSLGGNALLKYLGEHHDEASWLAAAAGVSVPLDLVAGGKALCTGFIARRIYTAYFLKTM
RRKVLEKAKRFPGAIDVIRIAHARDLRDFDDAYTARMHGYRNALDYWTRASSKPWLAHIKTPTLVLNARNDPFLPESALP
IPAECSDSVLLHQPAEGGHAGFPTGPFPAHLNWLPQRLGRFFEMGS
>SEQF1086_CAE43665.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRWNLTFSPSLGRRALAAALSLALGLPVAPAVGQPSGLPSMGAASASELSPMLERQLGDAIMAQGRRDPTYINDPELRQ
YLTTMGRKLASFAPGAAPHVEMFGVRDPEINAFAMPGGYIGVNTGLIVSSASESELAAVLAHEIGHVAQRHIARGMTQQN
QNSMVMLASLAGALLAALAGGGGNLAMGVAAFGQAAAINRQLGFSRDAEREADRTGLQMLAKAGYDPDGMAQMFSRLMNA
SRLNEGMGGGAWASTHPLSIDRMSDVQNRIRGLPGSRHVDSDGFWFIRAKMRVAQGRDALSLRTAQQQLQDESRALSGVR
QAAAFYGLALYAFQRNDLAQARAFLEQAGAGGRSSPQMARLAIDVAVAAKDNDQALALAQAAVKRWPDRKALGIAYAQAL
QAAGRHADAQAYLRERARQWGGDEPSLYQLLAQSEERTGHPVDARRNMARYYDLTGAYASAESQLQQARGLSNDFYEQSQ
IDVSIREIKQKLADERQLLERFKSG
>SEQF1086_CAE43666.1 putative UTP--glucose-1-phosphate uridylyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIARGGKKFAASTNFPALPPGVFMQVVRKAVFPVAGMGTRFLPATKAMPKEMLPVVDKPLIQYAVEEAVAAGITDLIFVT
GRNKRAIEDHFDAAPELETDLEAKGKHELLALVRDILPAHVNCLYIRQSAPLGLGHAVLTAAPAVGNEPFAVLLADDLID
ADTPVLKQLIDVAVARQGSVLGVQEVPREDTRKYGIVASQPVDARTERVTHIVEKPAPEQAPTTLAVVGRYVLEAAIFDH
LRATTVGAGNEIQLTDGIAALLRERDVYAHRYDGKRYDCGSKAGMFQATVALGRKYHGLIPE
>SEQF1086_CAE43667.1 putative inner membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRMDWLEWLIPWEFSPTLVAAFVVAIVLFVRGQRVHHVTAARQWLFWSGMVLLYLSMHTRLDYYAERMFFIHRAQHLVL
HHLGPLLVMAAFPGSAMRAGLPMAWRVRLRDFLRTGTGRALAAVLTHKVFVPTLFVFLVLVWLLPSVQFYSMLDWRLYRL
MNWSVVISGFMYWNLILDRRPSPPAAMTPGGRVLSPALTMAPQMVAGAVIAFTERDLYPLFELCGRAIAMSAQTDQTIGG
LTMWIPAALVEVVGLLVALGTLMRLSGKGRLRPQDRAARARQRAAGSPTSPAA
>SEQF1086_CAE43668.1 outer membrane porin protein OmpQ [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRLLVVAAMAAGSSSVFWSVAPARAANQLELYGVVDVGLATTRVSGLGTRQQVLGGGQTDNLWGLRGTEELDGGWRASF
GLESGFDAANGTRNDDARLFDYGTWVGLGHAGVGELSLGRQQSIGLQYGGQLEIASWRDMGMGALFKASDNYRVNNLVNY
LSPEFSGWQWGVGYAFDVESGDTGRFDRSPAFSTGLKYEDGPLLAAFTWDKLNLHDTSATGGRSPQALQAGFTYDFEALK
MALAWSRQRNGFVGLNGGGQIGLGPEPFAHGGAINAWLLGLEVPVHGNGAWLVQGSMARPDWHWANGQQASKAYVVTLGY
RQDLSARTSLYAYGGYMKGYDPEDPFASDVGRATRFGVGMTQRF
>SEQF1086_CAE43670.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHYYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE43671.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE43672.1 hypothetical protein BP3409 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRFFDLFLRRAGVDRTHALSQRRGTSRLTFVCPRDALGAVRKQICLDFSAAGLSVAQFQVDSGRDAELASACITVSCPPE
LRAELMSQARRLSANPAVQQLRFGAAEPAGARACAEAVA
>SEQF1086_CAE43673.1 putative inner membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFITLLLFFLSAAIIYFACEFFVNGVEWVGHRFKLGATATGTVLAAFGTALPESAVTFMAVVFGTTPEQKDIGVGAAMGG
PLVLATLAYAVVGLTLARTRRAGSSQVEAAINADQRRLARDQAWFMGVFVFKVALGLLAFAWKPWLGLLFLAVYGLYVKR
ELTREEECLDCEDLEPLKLRPRDPSPSLFWACAQTVLALAVIALASHVFVRQIELLGLAMGASPHVAALLLAPVATELPE
IMNALIWVRQGKERLALANISGAMMIQATIPSAMMIQATIPSALGIFLTPWLLDAPLLAAGGFTLAAILLLWLRFRRAAM
SVPALSAVGGLYALFAGYLGWHFYA
>SEQF1086_CAE43674.1 putative Xaa-Pro aminopeptidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLPPDDIAPFAARRRRLMDHMRAAGGGIAILPTAPQALRNRDAEYPYRHDSDFFYLTGFTEPEAWLVLVAGATDRALLF
CRDKHPEHEIWEGFRFGPEAAAARFGFDDAHGIGTLDELVPALLLDQPALWTPVAASAALDERVRSWLAAARAQGRSGRL
APAVLRDPAPVLAGMRLVKDAAEIAAMRRAAKISAAAHQRAMRAARPGMREYELEAELLYEFRRQGAQSVAYNSIVAAGA
NACVLHYPAGDAELRDGDLVLIDAGCEYDSYAADITRTFPVNGRFSGPQRALYDLVAHAQEAAVAATGPGRSWNDGHEAA
VRVLAQGMLDEKLLTGSLDGVLESGAYSRFYMHRTGHWLGLDVHDVGDYRGAGPAGAQRPWRMLEPGMMLTVEPGIYVRA
ADDVPARFWDIGIRIEDDALVTEEGCELITRGVPVQAREIEALMRE
>SEQF1086_CAE43675.1 putative inner membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQAHLSVPGAARRPRSKIALGLLACALGWIGAHWWYLGRRRAWMVTLAAILCLAATQWFPVWYDNPAFFLLFIPMIDGF
IEGVVFSLMPDEKFDRLYNPGLGQVSRTGWGPVLVAISGVLVGAIASMFAVAMVVVYTWVAMGWLDGYVF
>SEQF1086_CAE43676.1 putative monooxygenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRCMTLPAYDIAILGAGPVGRVLALLLARLTPQPQRIALLQGGAGLPPTPAGTLGPAADPRVLALNHGSRVLLESLRAWP
AHAAEIRHIHVSQRGRLGRTVIDREDFDVPQLGNVVAYAALHAQLEQAVQDCGVTVLSGPPARVDGQDGEGLTVRQGDAA
LHCRLAVQCDGAGGSDVRRDYAQHAVLTSAHATLPRSGWAWERFTNEGPLAMLPHPQTPEAYSVVWCCAPPRARRLAGLD
DEAFSRELTEAFGTRLGRLRSAAPRHVFPLELKARHAQAHGRLATIGNAAQTLHPVAGQGLNLGLRDAAQLAHALPDWLA
APQADPSPLLATFARARLADRWVTAGLTDLMPRIFATGLAPVEHACGLALLGLDIAAPLRAPLARHLLQGLRV
>SEQF1086_CAE43677.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRMRIGPWSLPNNVLVAPMAGVTDRPYRQLCKRLGAGYAVSEMAASNPRLWDSVKTSRRLNHEGEIDPISVQIAGADPTM
MAEAAAFNVAKGARIIDINMGCPVKKVCNVASGSALLRHEDLIVRILEAVVAACAPLGVPVTLKTRTGWDREHRNALRVG
RLAEQAGIAALTLHGRTRADLYTGQAEYDTIRAVKAELKIPVIANGDIDSPEKARQVLDYTGADAVMIGRAAQGRPWIFR
EIDHYLRTGARLAPPSYGEMRDLLLEHLDDHYRFYGEHTGVRTARKHIGWYLDDLPGAAAFCARMNQIDNTREQWRAVAD
WFDTILREGRDQQAFVAQPLLAA
>SEQF1086_CAE43678.1 DNA-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKKDVLEECVRASLERYFEDLGDSEPHDMWDMVMRCVERPVLEVALERSGGNQSRASEMLGITRNTLRKKLLAHNIQP
>SEQF1086_CAE43679.1 bifunctional purine biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKIETALLSVSDKTGIVEFARALTARGVRLLSTGGTARLLSEAGLAVTEVAQHTGSPEILEGRVKTLHPKIHGGLLARRD
SAEHMDTIAACGIDRIDMLVVNLYPFRETVAKPDCTFADAIENIDIGGPAMLRAAAKNHGTDAGGVTVVIDPADYSRVLA
QMDQGGSTSYALRLELAAKVYSHTAAYDGAIAAYLTSLAEAAPAQDAVPARNEWPGTLTIQVRQEQALRYGENPHQTAAF
YVDAQRPAGLLGNYRQLQGKELSYNNIADADAAWECVRSFDSTACVIVKHANPCGVAIGDGTLHVYQQAFKTDPTSAFGG
IIAFNRPVDAATAEAVSGQFLEVLLAPAYDGAALAILAAKKNVRVLEVPAGPGQNAFDIKRVGGGWLVQSPDAYNVPRDA
LKVVSKRQPTEQEMNDLAFAWKVAKYVKSNAIVFVGGGMTLGVGAGQMSRIDSARIASIKAENAGLTLRGSAVASDAFFP
FRDGLDVVVAAGATCVIQPGGSVRDDEVIAAADEHGIAMVLTGTRHFRH
>SEQF1086_CAE43680.1 crossover junction endodeoxyribonuclease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRVLGIDPGLRRTGFGVIDAEGMRLRYVASGTIVVPPALALPERLKVILDNLREVARETRPDVAALEIVFLNTNPASTLL
LGQARGAALCALADSALDVHEYTALQIKKAVMGTGRAAKEQVQMMVQRLLSLDGTPAPDSADALACAICHAHVGPLHDKL
DRLGTAAQLGSRPRLRNGRLVG
>SEQF1086_CAE43681.1 holliday junction DNA helicase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIGRITGTLIEKSPPVVCVDVNGVGYEIDVPMSTLYALPETGARVTLFTHLVVREDAQLLYGFGSSAERSTFRELIKVTG
IGARTALAVLSGLSVAELSQAITLQETGRLTRVPGIGKKTAERLLLEMRGKLGADIGATPHAASGHQSDILNALLALGYS
DKESQAALKKLPDGVDVSEGIRLALKALVR
>SEQF1086_CAE43682.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRILVIGGTGFIGRHLVARLAAQEHKVLVPTRRYNKGRDLQVLPTVTLIEADVHDDAELDRLMHRCDAVVNLVGVLHGGR
GRPYGAGFARAHVLLPERIAQACVRNGVARMLHVSALGADSGGPSMYLRSKGDGEAAIQRVFGATGGWTLFRPSVVFGPD
DNFTRMFARLARLFPVLPLAGARSRMQPVYVGDVADAMMAALANGHTAGKIYELCGPQVYTLGEIVRLCALWSGHPRPVC
EMPMALGRMQALLFECLPGDPLVSRDNLDSLTRDNVASGAAPSGLAAPPAALEAVAPAYLARR
>SEQF1086_CAE43683.1 putative serine/threonine dehydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQPQLPTYADVEQAAATLAGVAHRTPVLTSATADAMAGAQVFFKCENFQRMGAFKFRGGYNAIARLTPEQRRAGVVTFSS
GNHAQAIALAARLQGVQATIIMPQDAPAAKRAATEGYGGRVVTYDRYSEDREAIARRLHEETGATLIPPYDHADVIAGQG
TAAKELFDEVGELDFLFVCLGGGGLLAGSALAARALSPACRVYGVEPAAGNDGQQSLRKGEIVTIAAPKSIADGAVTTHL
GRLTFAIIQQQVADILTVSDAELVQSMRFFAERMKMVVEPTGCLAATAALRKLIPEAAGKRVGVIISGGNVDLPVYARLL
AD
>SEQF1086_CAE43684.1 holliday junction DNA helicase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAIQSDSLSSLPDSPRIVAPQPVSPNEESIERALRPKALEEYVGQQRAREQLEIFIAAARKRGEALDHVLLFGPPGLGKT
TLAHIIAHEMGVQLRQTSGPVLERPGDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDFQIDILIGEGPAARSVK
LDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNTDELARIVTRSASLLNADITADGAHEVARRSRGTPRIANRLLRR
VRDYAQVKSHGVIDQDAAGRALAMLDVDPQGLDVMDRKLLEAIVHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHG
YLQRTPRGRTATLTTWRHLGLTPPAAASGGTGELFSK
>SEQF1086_CAE43685.1 ATP-dependent DNA helicase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDPRALGVLARVFGYESFRGDQQAIVEHVIGGGDALVLMPTGGGKSLCYQVPALVREGTGIVVSPLIALMQDQVDALTE
LGVRAAFLNATQDWRVAREVEQAFLAGELDLLYVAPERLLTDRCLQLLERGRIALFAIDEAHCVSQWGHDFRPEYLGLSM
LHERWPEVPRIALTATATAATRSEIAQRLALDEARHFVASFDRPNIRYRIVEKNEVRRQLLDLIRSEHEGESGVVYGLSR
ARVEETADFLCANGVNALPYHAGLSPAVRAANQARFLREDGIVMVATIAFGMGIDKPDVRFVAHIDLPKSVEGYYQETGR
AGRDGLPASAWLAYGLQDVVQQRRMIDESPGDDAYRRRLGQQLDAMLGLCETVECRRVRLLAYFGQTITACGNCDVCLEP
PQAWDGTVAAQKVLSAVYRLWKERGQRYGAGHIIDILRGKSTDRTRQHDHETLSVFGVGADLSENAWRGVLRQLLAQGLL
AVDHEGFGTLALTEGSRAVLKGEHQLMLRREAEKKPRSSRAGARARPDPIDLPAEAKPVFESLRSWRGEVAKSNGVPAYV
IFHDATLREIALARPESLDDLSHISGVGARKLQAYGEEILRCVQRP
>SEQF1086_CAE43686.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI
>SEQF1086_CAE43688.1 putative carbonic anhydrase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFPKRLTDGYHAFLQGRFHSERSRYEALAEKGQKPEILLIGCCDSRVSPEVIFDAGPGEIFVVRNVANLVPPCEPDAESS
FHGTSAAIEFAVNGLNVKHIVVLGHASCGGIRSFYDDGEPLSKMDFIGKWMSQISPVAERLGPSTGDRATDIKRLELAVV
EESLRNLMTFPSISSRVERGELELHGTYFGVATGLLYVLDRATGQFAPWLEEDAAA
>SEQF1086_CAE43689.1 putative amidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSELAFSSLAELARGLEAGRYSAVELARHYLARIARANEALHAYVSVDEAGALRLAQAADARRAAGYALGPLDGLPIAIK
DLCEIEGQVTTAGSAAWRERRSKVTGTAVRRLLAAGMVVLGKTHMVEFAFGGWGTNPVMGTPRNPWDLSHPRIPGGSSSG
SGVAVAAGLAPAALGSDTGGSVRIPAALNGITGLKTSAGLISLHGAVPLSQTLDSIGPMTRDAYDAMLLVQALAGPDAAD
PATLGVPALVYAPPREGGRPLAGRRIAVMAEENYPLAVSADVALAVRQAADTLRALGAEVATVATPFDFTRLMHANGRII
AAEAYVLHRGYIDDAALPLGEFVRARVQSGRAIGAADYIAAMREHAQARAQWRAWMQDYDALLTPSLPFAACRLDEVDEQ
GAPLAAFSRAGNFLGASGLALPAGFSADGLPVGVQLMGKPFDDGLLCGLGVAFQQATDWHLRTPDLRAAGLA
>SEQF1086_CAE43690.1 putative branched-chain amino acid binding protein (partial) [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPVSAMLRAPMALAGKLGVKKAAILYSDEPFPAGLADGGRAQAAKNGIEVVLYEKYPKGQKDFSTLLQKAKAAGADALVP
TSYEGDLISMTRQMKQLDINFPYTFMVYASTPQFQAIGADSNYIFSHTNYHPAINWKVNAGLTREQFAKAYDTLFPKAEF
PPDFQTALTYGAGALTEEIIRKAGATDAAALKQASMDLSDKVTVMAGPYAIDETGKQLQMPFPVVQLLPGKGMVPVYPED
VAVEKAVYPAPAWNKR
>SEQF1086_CAE43691.1 putative branched-chain amino acid transport permease (partial) [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADTGICYKVLGWPILPSLAAASVVGLLIALLFAPTLRLRGVYFGIVSLALATIMRLLISNLPDGFTGGSMGLILSSANN
PTHSYYAMLAVMAATLATVAWLSISRLGKALKAIRDDDAAAACVGIHVPRTRLKAWLLAALFPALAGGIEAWYTNVVDPE
YAFHVLITAKSIIYAMAGGFGTIIGPVVGTLALLGIDHLIWQKFPVLNLLLGLVIVLLMLFLPRGIVGSLLKRYPQLRQY
IA
>SEQF1086_CAE43692.1 putative branched-chain amino acid transport permease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGLIIQGLVNGLILGAIYGLIGVGLNVIFGVLRVVNFAHGEFLVLGAYFAYYLLEYAGIDPLLALPLAFGAFFLAGYVL
YFVLIPRLSKADDPEISSLLLMFGVSIMLGAIMLLAFEADARSLPYEIEPVFFKIGPVLIPTVRLIALAIALAVVAVLAW
FLYRTQLGKALRTIIMNRDAVRIVGINVERLSAVAFGLGIGLAAVTGVLVAMVFPAFSPFMGNDYTLIGFIVIVLGGLGH
PVGALVGAMLFGVTEQVSVVFFNPSIATICGFVLMVAMIFVRPTGLFGHRALR
>SEQF1086_CAE43693.1 putative branched-chain amino acid transport ATP-binding ABC transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLKVSNLQKRFGGLVALRGVDLHVPRAAILGIIGMNGSGKTTMLNCINGLYVPDAGSIALDGAEIAGKQVHEVARLGVGR
TFQVPRVFQHLSLLDNLDVAQQQTSRNADERYAQSEYWLHKVELHRLRHNHAEELSGGQQKLLELARIMVAQPKVILLDE
PFAGVNPALAQLLIGIIRDVPTEHGCSVVLVSHDLTSIYQLSHHIIVMNEGAILCEGDADRVRTDPRVIEAYLGA
>SEQF1086_CAE43694.1 putative branched-chain amino acid transport ATP-binding ABC transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPTSAATTEPVFALDHVTVAYHGDITILNGVNVQARAGQVTGIIGPNGAGKSTVLKTLFGFLPLRGGRIVLRGQDISRQP
SHERAASGVAFVPQHRSLFGELSVEDNLVLGCWPFRRDKDKVRRRIDSVYQRFPILAQKRHDPVSSMSGGQQRFVEFGRA
LLIEPSVILLDEPTAMLAPKISKEIYALVRGFADEGMTVILVDQNVRRCAEISDYMYILELGRNKAEGAHEQFGHDGGLR
DMVASWMDYKID
>SEQF1086_CAE43695.1 putative sulfite reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYVYDPVDQQLVEERVKQFSDQTRRFLDGQLTEDEFRTLRLQNGLYIQRHAPMLRIAIPYGMLAARQLRKLAHIARTWDR
GYGHFSTRQNMQFNWPRLEDVPAILAELASVQMHSIQTSGNCIRNTTSDHFAGVAPDELVNPLVWCEIIRQWSTLHPEFA
FLPRKFKIAVSGAVEDRAAVGVHDIGLQAVERDGQLGFRFWVGGGLGRTPMVGHLINPFVPWQHLLTYLQAALRVYNLHG
RRDNKFKARIKILVKDLTPEVYAREVEQEWQSLKDGPDTITEDQLNTIAGRFVWPDYDSAAASEPDPTDARAQAYPRFAR
WLRTNVRAHKVAGYAAVTVSLKATGVPPGDITADQMDAVAGLSERYGFGELRVSHEQNLVLADVRRARLHDLWQELQQLN
LATPNIGLLTNIIACPGGDFCALANAVSIPVAESIQRRFDDLDYLFEIGELDLNISGCINSCGHHHVGHIGILGVDKAGE
EWYQVTLGGRQNGAAKPLPDLESPRGGGAAIGRIIGPSFARTQIPDVIDRLIRTYLELRDSDAERFIDVVDRVGIDPFKR
DVYADPAVAKLASQQEPAHA
>SEQF1086_CAE43696.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPEASHPDHLIRAGRLQADDARLFTPEADGPADQTPPDEPGWLVTLATWKAAAATLRARRHPVGVQLPPDARLDELTGPD
GELDRAALSFIAIEFPVYTDGRGYSLAQLLRRRYGWDGELRAVGDVMIDTIHYQARVGFDSFLVKPGHDPQRALAAFRTF
SVHYQHTYPAPLAA
>SEQF1086_CAE43697.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRIRHLVAACAALFSIATAPALAQDAELKVGVTVGPHAQIGEVVKSVAARDGLRVTLVEFSDFIQPNAALDAGELDLNIY
QHRPFLDAQNKARGYRLAPVASAVVQQMGVYSRRHQTLDALPQGAKVAIPNDPTNGARALLVLQAASLIELKPGVTVNAS
LFDIAANPRNLKFLEIEAAQLPHSLADVDAAAANSAYAIPAGLSPARDALALESKDAPFAVVVIAAREDNKNDPRIARFI
KAYQSEEVKQFVARQFPGAYSTSW
>SEQF1086_CAE43698.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPCAVPVMSSSADLHPHARALLADHYAAIDADLPALLELLFARSAGEDWHKAGTFKHHLLGVYRTLALWNQPREVRLLGL
FHSVYGNEYVDLTLFDRERERATLRQYLGEEAEQWVHLFCAMPRTQFVQRILAGEGRGATGLVLQGADGQPLTLTPRQVA
AFIVVSAADVGEQWHSWQDEIFAGYPHQERRDTSTHWAASLWPGPLKPPARILDMLSRLLQPLSTLPAGTGIPTPPAFGH
CTAVLDAGDEAAAAALYWQVITRMHPMTEMDSAHHLLQAAIAHNPWVAEPRLLLAQLALTAQDYDTALEQAAAGLAALQA
WGTSWDKRIEWSGWMAWARILLQNARDRQWPATLGGLNGLGLMG
>SEQF1086_CAE43699.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI
>SEQF1086_CAE43700.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAESARRIGLIIVGDEILSGRRQDKHFSKVVELLGARGLKLSWAELLPDDRATLAAVLRRSFASGDIVFSCGGIGGTPD
DHTRQAAAEALDLPLALHPEAEQAIALRAAEMAAKGQGTADMGTPENQQRLQIGMFPRGCEIVPNPYNRIPGFFVRDHTF
VPGFPVMAWPMLEWTLDTRYRALHHQVRHAEHSFLVFDMPESRITPAMLEIEQRWPGVRAFSLPSVGETGGPSHIDLGVK
GEPEAAAQALAFLRAEVVRLGGKLAPPAQN
>SEQF1086_CAE43701.1 IclR family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRIPNATARGPGSHSDDGAGQHPIAIQVIDRAMRLLDALAAQPEPVTLKELSATTGLHASTAHRILNDLVVGRYVERVD
NGLYQLGMRLLELGSLVKGRLNVREAAIGAMRSLHKQTGQTINLSVQQGDEIVYIDRAWSERSGMQVVRAIGGRAPLHLT
STGKLFLSTYDTRLVRAYALRTGLAGHTRNSLTELDRLERELALVRRHGYARDNEELELGVRCIAAGIYDDTGKLVAGLS
ISAPAERLQDEWIRLLVDAAASISEALGYEPGVNGIHAPAAA
>SEQF1086_CAE43702.1 dermonecrotic toxin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDKDESALRQLVDMALVGYDGVVEELLALPSEESGDLAGGRAKREKAEFALFSEAPNGDEPIGQDARTWFYFPKYRPVAV
SNLKKMQVAIRARLEPESLILQWLIALDVYLGVLIAALSRTVISDLVFEYVKARYEIYYLLNRVPHPLATAYLKRRRQRP
VDRSGRLGSVFEHPLWFAYDELAGTVDLDADIYEQALAESIERRMDGEPDDGSLDTAEHDVWRLCRDGINRGEQAIFQAS
GPYGVVADAGYMRTVADLAYADALADCLHAQLRIRAQGSVDSPGDEMPRKLDAWEIAKFHLAATQQARVDLLEAAFALDY
AALRDVRVYGDYRNALALRFIKREALRLLGARRGNASTMPAVAAGEYDEIVASGAANDAAYVSMAAALIAGVLCDLESAQ
RTLPVVLARFRPLGVLARFRRLEQETAGMLLGDQEPEPRGFISFTDFRDSDAFASYAEYAAQFNDYIDQYSILEAQRLAR
ILALGSRMTVDQWCLPLQKVRHYKVLTSQPGLIARGIENHNRGIEYCLGRPPLTDLPGLFTMFQLHDSSWLLVSNINGEL
WSDVLANAEVMQNPTLAALAEPQGRFRTGRRTGGWFLGGPATEGPSLRDNYLLKLRQSNPGLDVKKCWYFGYRQEYRLPA
GALGVPLFAVSVALRHSLDDLAAHAKSALYKPSEWQKFAFWIVPFYREIFFSTQDRSYRVDVGSIVFDSISLLASVFSIG
GKLGSFTRTQYGNLRNFVVRQRIAGLSGQRLWRSVLKELPALIGASGLRLSRSLLVDLYEIFEPVPIRRLVAGFVSATTV
GGRNQAFLRQAFSAASSSAGRTGGQLASEWRMAGVDATGLVESTSGGRFEGIYTRGLGPLSECTEHFIVESGNAYRVIWD
AYTHGWRVVNGRLPPRLTYTVPVRLNGQGHWETHLDVPGRGGAPEIFGRIRTRNLVALAAEQAAPMRRLLNQARRVALRH
IDTCRSRLALPRAESDMDAAIRIFFGEPDAGLRQRIGRRLQEVRAYIGDLSPVNDVLYRAGYDLDDVATLFNAVDRNTSL
GRQARMELYLDAIVDLHARLGYENARFVDLMAFHLLSLGHAATASEVVEAVSPRLLGNVFDISNVAQLERGIGNPASTGL
FVMLGAYSESSPAIFQSFVNDIFPAWRQASGGGPLVWNFGPAAISPTRLDYANTDIGLLNHGDISPLRARPPLGGRRDID
LPPGLDISFVRYDRPVRMSAPRALDASVFRPVDGPVHGYIQSWTGAEIEYAYGAPAAAREVMLTDNVRIISIENGDEGAI
GVRVRLDTVPVATPLILTGGSLSGCTTMVGVKEGYLAFYHTGKSTELGDWATAREGVQALYQAHLAMGYAPISIPAPMRN
DDLVSIAATYDRAVIAYLGKDVPGGGSTRITRHDEGAGSVVSFDYNAAVQASAVPRLGQVYVLISNDGQGARAVLLAEDL
AWAGSGSALDVLNERLVTLFPAPV
>SEQF1086_CAE43703.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPPISRKLSALFAAVALTGADTALAEYPERPVNMVVPFAAGGPTDNVARSLAESMRPTLGETVVVENKGGAGGTIGTTQV
ARAQPDGYSILLMHAGFSTAPSLYKNPGYEPYTSFEPIGLVVDVPMTIIARGDFPPNNIKELAEYVKKNADKISLANAGI
GAASHLCGTMLVEALGVNLLTIPYKGTAPAMNDLLGKQVDLMCDQTTNTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDE
SGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQLGAEVLTNEANPEALQAKVKQQVPQWAELFKKA
GVEKQ
>SEQF1086_CAE43704.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAIPQQVLARQKATVNSLVAAQSAMFAGFEKLVDLNLKVVRATLDEVAQQSQQAAELKDPQDVASFTSGLVQPGAEKAL
AYGKHVYDIVAGVQAELAQLAEAQIAEGQQQLTEAVEQFSKNAPTGSESAVALIKSSLATANSAYDSLTKAAKQAAEVAE
SNLNAAANASFKAASDAAEVATKAAGRNRRAA
>SEQF1086_CAE43705.1 dihydroorotate dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSILFHAYPLARPALFAMDAETAHEVTLAQLQRAYDCGLTRKLLHAQPEAPATLMGLSLRNPVGLAAGLDKNGAHIDALG
NLGFGFVEVGTVTPRAQPGNPKPRMFRLPRANALINRLGFNNQGLDAFIANVQRSQWRSQGRILGLNIGKNADTPIERAA
EDYLIGLAGVYPHADYVTVNISSPNTKNLRALQGGDELSALLGQLQERRLALADQHQRHVPLAVKIAPDLSDDQIDAIAE
ILPRHGIDGVIATNTTLARDAVQGLPHAEEAGGVSGAPVHELSLRVIERLRSRLGDAVAIIGVGGILSGRQASEKMAAGA
QAVQLYTGLIYRGPALVGECVRALAQGSR
>SEQF1086_CAE43706.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPDMSQLKELPFSTLQFYATAPYPCSYLPGRQARSQVAAPGHLINAGTYSQLVEQGFRRSGLFTYRPHCDNCHACVPVRV
DAARFEPNRTQRRAWRSHQALRAFVAELAWSPEHYDLYTRYQQGRHPGGGMDEDSRTQYAQFLLTTRVNTRLVEFRAPQG
QLAMISIIDVLDDGLSSVYTFYDPDMAGSLGTYSILWQIEQCRTLDLPWLYLGYWIADSRKMAYKANFRPLQMHVDGAWR
ETPP
>SEQF1086_CAE43708.1 putative NUDIX hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAQQSLQYFPAPRRARFCSQCGSPVDHRVPEGDNRARDICDRCGAIHYQNPRMVVGTVPVWENRILLCRRAIEPRYDTW
TLPAGFMELGESAAQGAERETLEESGARIRLGQLYTVIDVPQVEQVHFFYLAEALGPGLDPGPESLEARYFDEAEIPWDD
LSFRTVVTTLRRYLEDRRKGEFPTHHYSLESHR
>SEQF1086_CAE43709.1 LysR family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDTHTAMQTFARVVELGSFAAAADKTDQARSVVTRQVAFLERKYGVRLLNRTTRKLSLTDAGRAFYDRIRPVLAELAELD
LALQAQGSQPAGRLRISAPVSFGVLHLGPAIADYLLRYPEVVIDLDLNDRVVDLVEEGYDVAVRIGPLVDSSLVARPLAP
QQLVACAAPAYLERYGAPAQPEDLRRHRCLHYAYASTGNDWHFEKDGQTHVVRVNATFRANNGDVLRTAALAGHGIILQP
EFLVGEDLRAGRLTALLTDYRHSLITMMAVYPHRRFLSPKVRSFVEHLEKRFGGARQPLESRS
>SEQF1086_CAE43710.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIDSRTAPYAVLLLRLALGVMYLAHGLTKLLVFTLPGTAQFFAKVGFAGWLAYPVTYFEIVGGVLLILGIYPRWVAAIAA
VQLLAAATVHAGNGWAFGNPGGGWEYPVFLAVGAAALALLGNGKAALLPRPRA
>SEQF1086_CAE43711.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDQLVKDALARWPDVPAVYGWLSLDARGRWHLHPQGDAARGAPGESITSPQILAFIGRNYECDAQGNWFFQNGPQRVYVR
LDAAPLILRRADEFSGLQTHTGQAVTAVRQWWLDDEGRLYASTAAGPGLVEDRELAPLLAQLHVDGQALADVLETGWPEP
GRPPLMVSHPAWPNAAPLHGVASGDVARRLGFVANPAKPA
>SEQF1086_CAE43712.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLTCGRRNYVRTPMPTLHFPRPSARHGARLLLALVALTLACAPMMARADDDDDDDDYRPRREYKEKYWDGACKVERKWKR
NGEYREKRKCPGYRSGYDYGYAQPAMVPMIPANPAIIISAPPIVIRP
>SEQF1086_CAE43714.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43715.1 GntR family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRQPQSADIEELPLGRTSKSLPEQVADRLMQSIQTGVLQPGERLKEETLSDRFAVSRTTVREAISTLERRGVIERVPRF
GARVREIRADEIEEIFCIRAQLLGLAARRVAEHGDDEILEQLRQQVERLRQLADKPSTSPASYAKVSIETQQLLIQAVGW
KQLGTMYEGLSNQMLWKTSVRGKSLSFQSQQRRRESVGDWQRLLEAVCTRDAAAAEESAKLLLGASYRAVRGQLAS
>SEQF1086_CAE43716.1 putative acetolactate synthase large subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNPTLAARTGGRILVDALKVHGVDQAFCVPGESYLPVLDALRDDAQDIRLTVCRQEGGAAFMAEAYGKLTGKPGICFVTR
GPGATNASIGVHTAFQDSTPMILFVGQVGADVAEREAFQEIDYRRMYGQMAKWVASIDDAQRIPEFVHRAHQVALSGRPG
PVVLALPEDVLRATAHAADRVPHRIARACATSADMKRLHELLAAARRPLLIVGGGGWNEAASAAITRYAERAGLPVATAF
RRQDRFDNRHPCYAGHIGLGIAPSLARHVRQADLLLVVGARLADATTDSYALITPEHPGQTLIHVHPDPQELGRVYPADL
PIAADVQAFAAQLDACDNPPARCDAWLRELADDYRTDLAVAPSRRDTDLAQVMHWLNQHLPQNAIVTNGAGNYAGWVHRY
FQYSPQRRQLAPTNGAMGYGVPAAIAAKLAAPARTVVCFAGDGCFMMNGQELATAIQHDAAVVFIVVNNGMFGTIRMHQE
MHYPGRVSGTSLRNPDFVALASAYGAHAERVAHHDDFPAAFERACASGRAALIEIRTDPAAISARRDLPTLAA
>SEQF1086_CAE43717.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQRIFEKAALALALVAMPLWAGVACAQQPLRMMVGFPPGGTTDVIARLVAQRLGGELSRSVVVENRAGASGNLAAATVAK
ADPDGNTLLFAPSSHATNASLYTNQSFDTVKSFRAVGMVAVTPYVLVVNPGMQATNLRDFVDYLKRNPGKVEFASASPGT
GQHLAAELFKDEAGVDIMHVPYKGSAAALPDLIAGRVPMMFDNIAVMLPHIQQGTVRPLAITSKTRSRFLPDTPTMAESG
YPDFEVLGWFTLLAPAKTPDATVQAYNDALKKISADPDFVAQLAKLGGEAVARTPAQADAYIAEEVDKWGKVIRTAHINL
N
>SEQF1086_CAE43718.1 putative taurine dioxygenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDITVRPLGYAAGAAVSGIDLRQALQPEQLARLRAAWHEHLVLVFPGQDLNAPQLIDFTRHFGDVERNDSVPYYRDPDY
PEVLLVTNKPRDGKPSQTRNTGRNWHSDLSYTDRPAKGSVLMCKEKPPVGGDTMFANMYQAYESLSAPFKRFVDGLHAVH
DISLIKGFDRRDPEQTAALKRRNPPIAHPVVRIHPETGRKCLFVSDRVRTFVGMTEEESRPILDFLNRHATSPEFVYRHR
WSVNDIVMWDNRCTLHIALPDFDQSKPRHMMRCSMLGEPSGYVIEDAPLDEQAARSAIAAVS
>SEQF1086_CAE43719.1 NADP-dependent malic enzyme [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKDTDRQAALDYHAYPHPGKISVTATKPLVTQRDLSLAYSPGVAAACEEIVDDPVNVFRYTGRGNLVGVITNGTAVLGLG
NIGALASKPVMEGKAVLFKKFAGLDVFDIEINETDPDKLVEIIAGLEATFGGINLEDIKAPECFTVERKLRERMKIPVFH
DDQHGTAITVCAAVVNGLAVAGKRIEDVKLVTSGAGAAALACLDLLVDLGLPLEHIWVTDIEGVVYEGRKKLMDADKERF
ARKTKARTLAEVIEGADVFLGLSAGNVLKPEMVATMAANPLILALANPNPEILPEAAHAVRDDIVMATGRSDYPNQVNNV
LCFPYIFRGALDVGATTITREMEKAAVLAIASLAREEQNEVVAAAYGTYDISFGRDYLIPKPFDPRLIVRIAPAVAKAAM
EGGVATRPIADLDAYAEQLQQFVYHSGAFMKPLFSQAKQIVRDGGRARIVFTEGEDERVLRAVQVIVDEKVAKPILVGRP
QVLLSRIEKFGLRLRLGQDVEVCNPEYDERFHQYWTTYWDMMCRNGITKEMARVEMRRRLTLIGAMMVHLGDADGMICGA
VSGFHDHLRFIDQVIGRKPGAQTYAAMNILLLNERTVALVDTHVNEDPSAEQIAEYTVAAAEEMQRLGLAPKVALLSRSN
FGSGSSASGAKMRHALELVNRQAPGLEIDGEMHGDCALDESLRLRLLPDSPLKGSANLLVCPNVDSGNIAYNLLKTVAGK
NVAVGPILLGANAPVHIVTSSATVRRIINMAALCVLDANRPQ
>SEQF1086_CAE43720.1 LysR family regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTGSPSVDAAEIVRRLTSRLKMRHLQLLLHVRQLGSLTRVAQQLSTSQPAVTNALAELEDMFGAPLFQRTARGMTPTPLG
LVVLARAEAIIHDLRHLVDDMGASASGYTARLHLGVTPFVSSRLIAAAIGRAQRADHRLAASVHDGISGKLLAGLRDHSL
DVVVARAGPALDVEGIVFEPLYVQQPRLIASRRLAARLARRALDWSALAELDWILGVPQTAMRDQVASLFMQAGIRPPAA
TTECHSAKLIGELIAASDRALSIVPADIADELVSVAGVAIVPFSFTWHLPPIAVFMRHESQGSAPHRLFAEALREECRHA
RAG
>SEQF1086_CAE43721.1 binding-protein-dependent transport systems inner membrane component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLSYTLRRLLMTLPVMLFVALFVFGLLDLAPGDPAALLAGEDATPQDIARIRATLGLDQPFLQRFAEWGWNVLHGDLGTS
LFTGLPVSHMIGQRLVPTFSLMLMTLLVSVVIAIPIGALAAWKHNRLQDRGIMVLAVFSFSVPSFAVGYLLAWIFGLQLR
WFPVQGYVPLATGFWASVHTLVLPALALGSVYVALITRITRATLLETLSQDYIRTARAKGVGNRGLLFRHALKNAAVPII
TVIGSGVALLISGTVVTETVFSIPGLGRLVVDAILWRDYPVIQGVILLFSFMYVLVNLLVDLLYRAFDPRIKY
>SEQF1086_CAE43722.1 binding-protein-dependent transport systems inner membrane component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNIAGFLKRHPTTAVGGGLLLLLFLMAVCAPWLGTVDPTALSPIHRTRAPSEQFWFGTDLLGRDVYSRVIYGARVSLIV
GFTVAALSTVIGVVIGLAAGFVRWVDAVVMRIMDGFMSIPTILLAIALIALTRASLQNVIIAITIAEVPRVVRLVRGLVL
SLREQPYVEAAVAAGASRLRIVARHIFPNTLAALMVQATYICGVAILAEASLSFIGAGVPPSVPSWGNIMAEGRALWQIK
PHLIAFPAVFLSITILAINMLGDGLRDAVDPRMAKRI
>SEQF1086_CAE43723.1 ABC transporter ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTTTTQSRRVLELENLSIAFGRGVHTFHAVKSLSLHVDRGETLAIVGESGSGKSVTSLAVMRLVEFGGGRIESGRMTFY
RGAGEAVDLAAASEDSMRAMRGNDLGMIFQEPMTSLNPVFTVGAQIVEAIRLHQACDARAAQAAAKRILDQVRIPDSASI
LGRYPHELSGGMRQRVMIAMALSCKPALLIADEPTTALDVTIQAQILQLIRELQREMDMGVIFITHDMGVVAEVADRVLV
MRKGDVVENNDVHGLFNAPSHPYTKALMAAVPRLGAMQGTTAPARFALLSDAQARHEAEPPAVAPSDKVVLRVRDLVTRF
DVRGGIFARVKKRVHAVEQVSFDLHAGETLSLVGESGCGKTSTGRSLLRLAKTTRGQIEFDGKPVRQEDPASLRALRRNM
QFVFQDPFASLNPRMRVGDCVKEPMLIHNLYSGAQADRRAAELFERVGLDAAMMQRWPHEFSGGQRQRICIARALSVDPK
VLIADESVSALDVSIQAQIVNLLIDLQRDLGVSYLFISHDMAVVERISHRVAVMYLGQIVEIGPRQAIFENPQHPYTKKL
MQAVPIADPGARRSITLELSELPSPARPVGDEPVVKLLEQAGPGHFVARHRIGGAY
>SEQF1086_CAE43725.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSNAPKVAILGFHLESNAFSPLSVEADFLAQCWEQGEDITRLARGASRLPSEVPGFYARMDELGAWTPAPLIVIGAPPG
GPASAGVWRRFLAEAETRLRAALPVDAVYVANHGASSAEGQDDTEGELMGRLRAIVGPGVPIVASHDLHCNVSEQTVQAL
DGLISYRTNPHVDQRERAADAADMIHEILGGTRMVSAYVRLPLTPPSVTLLTSSGPYADLVALGASLIQKPDEGPIANVS
VCSGFVFSDLPKCGLTITVTARGDLQAARRAALRIARAGWADRKRYVANTVEVARAVELARAAGQPLLFADVADNPGGGG
GNTAWLLRAFHEARIPGVVLGVFVDPELAAQAAQLGEGAEFDAVFNRIETDYARRYQARARVLRLTDGEGMGWRGILRGR
KFSLGASCLLELVDSGMRVVVGSLRRQLAEPAMLEMHGIDIARAGHVVVKSRGHYRAGFDEFFPDDRIHDVDSLGLTTPN
LKQIAFKRLPRPVWPLDDAAAWQEPDWAEGL
>SEQF1086_CAE43726.1 LysR family regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLNTALRYFLEVVDAGSLTLAAQKLHVAPSAVSRMVRKLEGEHQAQLFERHARGMVLTEAGQLLKAYARRASLDAERARA
EIRELSQIGQKLIRVSANQAFGRELLPRVIGEFREIEPTVRFELNILQSSEINRRVREGEDDIGLSYNLAPPQDVHVQYA
RRMPLFAVMAPQHPLAGRDMLSMQDIGDYPVVLMGPGSTNRFFIDLCCMHEKIELNIAMTCNNQGAIQTCCQQWGAISFS
GDLTVMTPTERGELVSIPMANSELHQRIMHIQTMADRQLPASVGRFVQALASRINASYADPAWLAAGRGSGAL
>SEQF1086_CAE43727.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAARDKHIYIRMIKKRYLATAVVALAVAVAAALYARQDEPEHFDEVVLLCLDDQAMSTVRRTGSVDGILPACQPELAEV
LGEDFGAVDEPTLRAVLATVAAANFAEYGSSSAVACEAIEKSQHLNCGNLVFLMGYLYGGLKEKGIRPIGVDGGAVGNHA
QIMYKSGNNRLLLDPTTGVVAAITFNKLMSGQPVPEEQVRVFRVKAKTIDSFRDRVYRAVVGGGYLPSDLMYMHESLWEL
KTKGSSSVYFTPGGITVRKKLAQAAG
>SEQF1086_CAE43728.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTRQHSTQPDPKLDLVLERTIDVPPALVWQAWTQPEHIKHWLTPAPWQTVRCDVDLRPGGRFRFVMRSPEGEEHTHDCCY
LEIVEGSRLVWTNALLPGFRPAGGGGDVPAFTAVIRIEPHDQGTRYTATAMHGTQAGCRQHSDMGFHDGWGAALDQLVAH
ARNMQQAS
>SEQF1086_CAE43729.1 putative ArsR family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPNQAAQLSQVFQALSDPTRRAVLERLCQGSAAMSELARPFNMALPSFSQHLDVLERCGLVRSRKSGRVRIYTLAPQPLG
MAEHWMTRQRAIWERRLDQLDLYLQDLKEQKR
>SEQF1086_CAE43730.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTWFKRIVIGLVVLVVVAVVGLAIFLLTFDPNAYKYKLEEAVQARYERTLNIEGEIELSLFPRIGLAVQGVSLSEPNSP
DVFASIDSMRLAVAVWPLLSNSLVVDHVTINGFKARVIRGKDSHFNFENLVGGSVQSTDVPGNAAEATAGAITGTAQAIV
NGTVSTPKSMQIDIAGLDLKDGEIQLQDAMSGMAVAITKLNAATGRVTYNQPFDVSLSARVEGGNPRLDAGLTGQAQLTL
DPLAKRYAAQRLDLRMEGRLPGAQAKSLAARGNVAFNGMTSSLDVAGLEILFQGDIVDTATKLTNVEASVAMPKLAVDPH
KTELQIDKLAVRAKGAMPGGPFELAVDAPALNISPTNASGDALSGRVRTQELDASFGLNGISGNAGELDIKEAKLDSTLK
QGERVVKSAFASPVTLNLLQRSIGLSALKGDVNITDPGLPKGSLQIPVIGSVNANLLKDQANARINAVLEGGKFDLSADI
VALSAVPRVTFALAVDTLDLDKLAPPAGASAPPKPAGDGKQDESKPPAKPQPAPAPAAADDSINLSGLVGPTASGTIKIG
QLVMRGLKAEQVAANIKLEKGKLDISTLTAALYGGKLGGVMSVDAVNGNQLVAKMSLAGIAIQPLLSDLAGKDTLSGTGS
LAFDLKTAGANTYAMKSGLAGTMQVRLRDGAIKGINVAQTLRELKAMFRGEAHDPTVQDDQTRQTDFTSLESDLVFNKGV
ATVKRLDMAAPLLRVNQGNPANIDFVRSELDFVARVRVVNTSTGQDGKDLAELRNLTIPLLITGPFDKPVYTLQWREVAG
EALKRGLEKQLKEALTGGEGASGSPAKNIDKALKGILGK
>SEQF1086_CAE43731.1 hypothetical protein BP3468 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTTAYQPIAECGATTQSEAAAYQKRWLVANDAGQWLNRDLCPRLAEVSVELRMGYLVLKAPGMLRLDIPLDVIEDDDSV
RYQMLVGEQTVDVVDEGELAAAWISNHAGVPCRILKVHPDMAEVRWPS
>SEQF1086_CAE43732.1 putative transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAIVAGLVAVLVSFGGTAVLMVQAGHAAGLDAARIGSWLGSICLALGVGGALISLRSRIPVVFAWSTPGAALLVTGLVG
VPFDQAVGAFVLAAALTLACGVFGWIDPIVRRIPAELAAAMLAGVLLNFGMGIFGSIAAQPVLVLSMCAAYLLGRRWAPR
FAVLAVLVVGLAAASSLDLLRLGHVQWAWTEFVWTTPSFTWQAAISLGIPLFVVAMASQNLPGLAILQAAGYRPPASRLV
GLLAAPFGAHSVTLGAIIAALCAGPEAHANPGRRYVAAATYGLTYVLLSVAAGAVAVFFQALPGALIAALAGLALLGAIM
GGMTTAMADPQRREAALVTLLATASGISFWGIGSAFWGLAAGLATHGALAWRRARSA
>SEQF1086_CAE43733.1 ferredoxin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALKITEECINCDVCEPQCPNEAISMGADYYVIDPDRCTECVGHHDEPQCKVVCPVECIELHPQWQEGQEQLMAKYRRLT
GAA
>SEQF1086_CAE43734.1 phosphopantetheine adenylyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIIAVYPGTFDPLTRGHEDLVRRAATLFDKVVVGIAHSRNKKPFFTIEERVDIAREVLGHYPNVEVHSFGGLLKDFVRDQ
NGRVIIRGLRAVSDFEYEFQMAGMNRHLLPDVETMFMTPSDQYQFISGTIVREIAQLGGDVSKFVFPSVERWLQAKAKER
REQSAQGGA
>SEQF1086_CAE43735.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPSRPGSKPIRIVGGLYRRTLIPVADAPGLRPTPDRVRETLFNWLNHLWGGEFADKRVLDLFAGSGALGFEAASRGAGQ
VQMVERDRGAAAALRTLRDKLQAGAVRIHAGDAMQVIERMDASRFDLVLLDPPFGQGWLERLWPLLPAVLAEDGLVYVES
ETAPAPPAGFELLREGKAGAVHYRLFQFAAMRKSMNNPALEDGASH
>SEQF1086_CAE43736.1 cell division protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPMFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPEPQPQQPPEPQPPVAAAPEAPRKASWLSRLKQGLSR
TGQNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLG
RAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVISQDGGDPAAVAFDSVNA
GRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIRAFDAAITLTGLVVTKLDG
TAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD
>SEQF1086_CAE43738.1 binding-protein-dependent transport system permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTSVTSLEPGHPRTWQRYSGGQKALRFMLYLLLVAAIVQAVRSVEVIPEFLYDAPEQMAALLRRMWPIDWSYYPEGVHA
ALVETLHIATLGTILSVGMAVPVGLLAANNLTPSRTINMLARLILVSSRSVNSLVWALLFIAIFGPGALAGTLAIAFRSI
GFVGKLVGEAIEEAQRGPIEALTATGASKAAVLWYGYWPQIRPSFWSIVLLRWDINVRESAVLGLVGAGGIGMALDTALN
LFQWDRVALVLAAIFIVVVAAEIVITQARKRIL
>SEQF1086_CAE43739.1 binding-protein-dependent transport systems inner membrane component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAGVTVRTANMARRPFSLSWRAKTGVLLVVLYTFYAAAQLDFSWARFETGLGHAATFLARMFPPNFEKPDTLWKGIAESL
EIAVLASVLGILLSLPIGLLGARNLMPAWASWPARALVALCRALRPVIVAILFVKAVGFGALAGILALTVASIGFIGKLF
TEAIEEISLKQVEAVRASGASFGNVIIFGVLPQVFARFVGFATYQFDSNLRNSTMVGIVGAGGIGGTLFSAFQRFDYDFV
AAILLTLIAIIMLGEILAGFVRKVFLDNMGFERILQRRFTAARGLGSTTPLARKGEVDE
>SEQF1086_CAE43741.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFFFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE43742.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRAKRLLQAAAVTALIFGSYAAQAADAACSNRGDLDNMYCDANKDLVADTPTDKSKLKTPSTLVFTYTPVEDPAVYEDIF
KPFTKHLSECTGKRVVFYQVQSNAAEIEAMRSGRLHVGCFSTGPTAFAVNIAGAVPFAVKGYADEFQGYNLIVIVKKDSP
YQKLTDLKGKKLAHTAPSSNSGHMAPVALFPKEGLTPDKDYKVIFSGKHDQSVMGVNSGDYDAAAVASDVFKRMAERGQV
KEEDFRVIYRSEKFPTSSFAYAHDLEPAFRDKMLKCFYDYRFPDEMKKAFDGADRFYPVTYQKDWAIVREVAESGGEKFN
RAAYDRETAKSKGKQ
>SEQF1086_CAE43743.1 putative transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAAKSTAKPAAAPGNDGRRSIQSVEVGFPLLAALVDAGRPLTLRDLAGAAGMTSAKAHPYLVSFTRVGLVQQDTVTGQY
ELGPFALQMGLVSLQRLDPVRVALPEVDKLQSEIGHTLGIAVLGSHGPTMIHITEASYPVHVNMRKGTVMSMLHTATGQV
FAAWLPPKVAEHYIAREDGDAAVIASLTPRKTTRANLDAMLADIRVHGMARALGNPLPGVDALSVPVFDHTGGIVLALTS
LGPTGLFDASFTGAIARPLLACAQEISRKLGYRGN
>SEQF1086_CAE43744.1 haloacid dehalogenase-like hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQALAAMPAPVAASVRIVLTDIDDTLTTEGRLPAGAYAALERLEQAGIVVVPITGRPAGWCDHIARMWPVRAVVGENGAF
YYAYDRSARRMNAHYWADAATRAANRQALQAIRERVLREVPGTAVASDQDYRVADLAIDFCEDVPALPDSAVGRIVEIFH
EAGAQAKVSSIHVNGWFGDYDKLTMTRTLFEREFGLSIDSALQHTLFIGDSPNDEPMFKFFPISVGVANIQSQLHRIQHR
PAFVAAARGGDGFVEMAERLLANRG
>SEQF1086_CAE43745.1 putative 3,4-dihydroxy-2-butanone 4-phosphate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAQISPLNAGAAPESFGIASVPEIIAELRAGRIVILVDEEDRENEGDLVMAAEFVTPEAINFMVTHGRGLVCLTLTEER
CRQLDLPLMASRNGTRYGTNFTQSIEAAEGVETGISAADRARTIQVAVARDAQPSDLVQPGHIFPVRAVPGGVLVRAGHT
EAGCDLTAMGGLTPAAVICEILKPDGTMARLPDLVEFAREHKLKIGTIADLIQYRSEHESIIARMGERMMQTPWGDFRCI
AYRDDATRSPHLALVHGNIDPERETLVRVHEPASLFDVLDTGASPHSWSVGQALHAIAASPAGVLVLMNCQSSTEHLFGQ
IANWAGPAERAAAQEGDRFGLRTYGIGAQILRDLNVGRMKLLARPRKMPSMAGFALTITGYDCVPPNLRND
>SEQF1086_CAE43746.1 putative 6,7-dimethyl-8-ribityllumazine synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNPYILTPDLNGEGLHIGIVRARFNEEIGQAQLQACLEELGKLGVDERDVMVVSVPGALELGVALARMAESYEFDALIAL
GAVIRGETYHFEVVSNESAAAISRIALETGIPVANGVLTVDTDEQAQARAAGKGADCAQVAVEMANLAAALEPEEDDEDD
EDEDFDDEEDDGR
>SEQF1086_CAE43747.1 N utilization substance protein B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQARANARSARRRAREFALQGVYAWLLRGGEGTQDAGEIDAHLRDAEDFSEADAQWFKTLLHGVLREAPVLRERFLPYID
RPLAELSPVEHGILLIGSFELMHHVEVPYKVAINEAVELAKSFGGTDGFKFVNGVLDKLAADVRTAEVQAAPRR
>SEQF1086_CAE43748.1 putative thiamine-monophosphate kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLAGVALASEFDLIARYFTRPAPDGVLGVGDDCALFPVPPGQQVATSTDLLIEGRHFFPDVDPQALGHKALAVNLSDLAA
MGARPVGCLLGLALPGVDEAWLAAFARGFQALADTHACPLIGGDTTRAPQGLLAISVTVFGAVAPGHALRRAAAQPGDDV
WVSGELGAADIAYRLLDRQLPADPLRLAATRAALEWPRPRVELGMALAGLARAGIDISDGLLQDLGHILAASGVAAELRY
DALPVAAALAGLPAETVRRAALGGGDVYELCFTADPAHRQAIRQAAHGAGAPVSRIGRILAGQGLRVLDADGAPLGELPG
GFDHFSDATDQPAPDRRP
>SEQF1086_CAE43749.1 putative phosphatidylglycerophosphatase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQVRTRVSYPSWSWVRARPARLLAFGLGSGLLRPASGTWGTLLAWLSWFVFAPLAPDWALGMGIAAAFAYGCLACGQAGR
ELGVSDHVGMVWDEIVAFWLVLWLVPQTVAAQALAFVLFRVFDIAKPPPIKYFDARIKGGFGVMWDDIVAAAYTLLVMAI
LVRMGVFT
>SEQF1086_CAE43750.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLHDTQGRAGLAPTPLTAAAIQGLAEMVGEALLRRDWMMGTAESCTGGLLAGAVTSVAGSSDWFERGFVTYSNAAKVAE
LGVSGETLDHYGAVSEPVALEMANGVLLATPSAQVGVSTTGIAGPGGATPGKPVGMVCFGFAMRAHGGITSRAITHVFPG
DRAQVRNASVEFALRGILEFLGEPVNRG
>SEQF1086_CAE43751.1 putative orotidine 5'-phosphate decarboxylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTFLKKLEHAWSASQSLLQVGLDPDPKRFPRELEGKPDAIFQFCRDIVDATAPYACSFKPQIAYFAAHRAEDQLEALCQH
IRAQHPDLPIVLDAKRGDIGSTAENYAREAFERYQAHALTVSPYMGLDSVEPYLAWGDRGVIVLCRTSNPGGSDLQFLKM
ADGQPLYLHVAGLVADKWNANGQCGLVVGATFPNELAAVRQRIGDAVPLLVPGIGAQGGDINATVQAGANSAGAGMMINS
SRAILYASTGEDWRQAAGEAARGLRDAINAVRT
>SEQF1086_CAE43752.1 putative NADH dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQTPNTGSPHRVVIVGGGAGGLELAAKLGRAHGRERVTLVDSRPFHIWKPSLHEAAAGTLDIHQEGLSYLMLANMCNFT
FAQGELQGIERERRQIQVGPVADPSGQQVLPPRELSYDTLVLAMGSTSNFFNTPGAAEHAVTLDTTENAEQFRLTMLKAM
VQVDLRKVHDPSARLDLVIVGGGATGVELAVELIEASHVVSAYGLPNFRADRDLVITLVEGAPRILSALPEKISRATHAR
LTELGVRVETDCRVAEVGADHVVTADGRRFEATMCLWAAGIEGPPLFRQLGLPLNRLGQLEVNERQESPDPHILALGDCC
AAPWKDGRTVPARAQAAHQQADYLARKLTARLRNAAEPTEAYAYHDHGSLVSLGQGSGVGSLMGKLAGRGLFVSGTLARL
MYMSLHLMHHRAVLGISRTATLALARLLMRRTRPRVKLH
>SEQF1086_CAE43753.1 putative diacylglycerol kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAHTPHPSPFKSTGGLRRILNALRYSLQGLKAAIKYEAAFRQELVLAILLVPAAFFLGRTTDEVFILIASVILVLVAELL
NSAIEALADALSVETHPLLGRAKDLGSAAVMLMLLFTLAVWVAVLISRFVLD
>SEQF1086_CAE43754.1 serum resistance protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRLPRQIRLPHLRDIGALLTDSAREWSRHRASSKGAALSLYMVFSLAPMLILVIAVAGAFFGEEAVRSELFSQVRDLTGE
RGAEVIQTVLASAHESGSGWLAALLSICVLVFSATTAFAELKASLDELWDVKEDKSGLQGLVRSRMLSFGLVLVLALFLL
LSLTLNAALGAAKGYYGDLWSTSAFAMAADWLSNLFSFAVVTALFAVVYKLLPSKRIPWLDVIPGAIVTAALFLAGKWGI
GLYLGRGAAVSAYGAAGSLIALLLWIYYSAQIFFFGAVFTRQFAERFGSLRRAAPA
>SEQF1086_CAE43755.1 serum resistance protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYLDRFRQCPSSLQIPRSAWRLHALAAALALAGMARLAPAAAQAPQPPVAGAPHAQDAGQEGEFDHRDNTLIAVFDDGVG
INLDDDPDELGETAPPTLKDIHISVEHKNPMSKPAIGVRVSGAGRALTLAGSTIDATEGGIPAVVRRGGTLELDGVTVAG
GEGMEPMTVSDAGSRLSVRGGVLGGEAPGVGLVRAAQGGQASIIDATLQSILGPALIADGGSISVAGGSIDMDMGPGFPP
PPPPLPGAPLAAHPPLDRVAAVHAGQDGKVTLREVALRAHGPQATGVYAYMPGSEITLQGGTVSVQGDDGAGVVAGAGLL
DALPPGGTVRLDGTTVSTDGANTDAVLVRGDAARAEVVNTVLRTAKSLAAGVSAQHGGRVTLRQTRIETAGAGAEGISVL
GFEPQSGSGPASVDMQGGSITTTGNRAAGIALTHGSARLEGVAVRAEGSGSSAAQLANGTLVVSAGSLASAQSGAISVTD
TPLKLMPGALASSTVSVRLTDGATAQGGNGVFLQQHSTIPVAVALESGALARGDIVADGNKPLDAGISLSVASGAAWHGA
TQVLQSATLGKGGTWVVNADSRVQDMSMRGGRVEFQAPAPEASYKTLTLQTLDGNGVFVLNTNVAAGQNDQLRVTGRADG
QHRVLVRNAGGEADSRGARLGLVHTQGQGNATFRLANVGKAVDLGTWRYSLAEDPKTHVWSLQRAGQALSGAANAAVNAA
DLSSIALAESNALDKRLGELRLRADAGGPWARTFSERQQISNRHARAYDQTVSGLEIGLDRGWSASGGRWYAGGLLGYTY
ADRTYPGDGGGKVKGLHVGGYAAYVGDGGYYLDTVLRLGRYDQQYNIAGTDGGRVTADYRTSGAAWSLEGGRRFELPNDW
FAEPQAEVMLWRTSGKRYRASNGLRVKVDANTATLGRLGLRFGRRIALAGGNIVQPYARLGWTQEFKSTGDVRTNGIGHA
GAGRHGRVELGAGVDAALGKGHNLYASYEYAAGDRINIPWSFHAGYRYSF
>SEQF1086_CAE43756.1 60 kDa chaperonin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAKQVLFADEARVRIVRGVNVLANAVKTTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKFENIGAQLVKDVASK
TSDNAGDGTTTATVLAQAVVQEGLKYVAAGFNPIDLKRGIDKAVAAAVEELKKLSKPVTTSKEIAQVGSISANSDASIGQ
IIADAMDKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINSPEKQVAALDDPYVLIYDKKVSNIRDLLPVLEQV
AKSSRPLLIIAEDVEGEALATLVVNNIRGILKTTAVKAPGFGDRRKAMLEDIAILTGGTVISEETGMSLEKATLQDLGQA
KRIEVAKENTTIIDGAGDGKSIEARVKQIRAQIEEATSDYDREKLQERVAKLAGGVAVIRVGAATEVEMKEKKARVEDAL
HATRAAVEEGVVPGGGVALLRAKQAITGLKGDTADQNAGIKLILRAVEEPLRTIVTNAGDEASVVVNTVLNGKGNYGYNA
ATGEYGDLVEQGVLDPTKVTRTALQNAASVASLLLTAEAAVVELMENKPAAAPAMPGGMGGMGGMDF
>SEQF1086_CAE43757.1 10 kDa chaperonin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALRPLHDRVIVKRLDNERKTASGIVIPDSAAEKPDQGEVVAVGPGKKTEDGKILPVDLKAGDKVLFGKYAGQTVKVDGE
ELLVIREDEILAVIQ
>SEQF1086_CAE43758.1 hypothetical protein BP3497 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTHSKALLLVSMEPPAGMEAEFNDWYDTEHLPERAGLPGFETALRYVCVAGWPRYLALYDLSNIEVLDDKPYQDVSGERF
SPWSKRVLNRVRGQSRMAAQQVYPRQAITQRAPRLLLLRFVGLTLQHEADLVSTLRSAFSNRAGVQQLRVYREPADNGPR
FLALVEAHESFSHQEKTSGLGPYARHLDMINEYTPYWTRGALHGVYPES
>SEQF1086_CAE43759.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHKSHYQRFIMPTAIRIGVLIPENNTRVAEELPLWLPGCRLEVVKIPRDKGLLNAAALPAYKENALALAREKLGTGDIDV
VAYGCTAAGFLLGPVGDQELARQLRENTGKPVATIASSMTSVLTQDGIRKVAVVTPYSDAVNAQLKGFISNAGIEIAAFD
SLYAKDVDELGRISAQAVSHIARQTMNDDCEAMFIACAQLPTFNVLHQLETEFGRPVYSSIQAMATQIQAIAS
>SEQF1086_CAE43760.1 hypothetical protein BP3499 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTKALLLAMMTPPGDLEEEFNEWYDTEHFPRLSTVPGFDRSSRYVAVKGWPKYVALYDLASVDALEHPQYTRAPGARFSP
WAQRILTKLHGQYRFSGDQIYPGPALMGDRGRPLQVAVMRFREMPGAHEVALIEGLQAIVDSSEDLLQARVFRGSGPLQG
DYIALVECRAHDPRIPVTASALGPAADHLDLMTFYIPYWRRGYVPSVFEAQ
>SEQF1086_CAE43761.1 putative dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSPVVSEASPERWDDETDVLVIGSGAGGLSAALFAAQAGLRVLICEKLAYVGGTTATSGGGIWVPGTKAGLAAGDTLEAA
RTYLKALLGDFYQEEVIDTYLATGGKVIDFLNENTEVKFDLSSWPDYRSSLPGGATRGRSLFPQPFDGKKLGRNFSLLHP
PLHRLMVLGGLMLGPEEVHDFLRPFSSPRALMRVLRKLLRYGMDRIRYARGTDLRSGNALAARLLYSVDKLGCRILTQAD
LESLAIDHDRVIGATVVVGGVPKRIRASKAVLLATGGFAHNQEMLRRYGPATPHRFSLCNPACTGAGIQAALDAGASVDR
ELSSVGFWTPASASREKNGADTPVIYGYLDRGRPGVIAVNEQGERFVNEANSYHDIVTAIFANGGADGKPFYFITDREFV
RRHGLGLIRPWPWNRSLRPWIRRGYITVASTLDKLGPKIGIDPGALAAAVQRHNQSARTGQDPDFHKGASAYNRMFGHNM
TWPNPNLAPIETPPFVALRIHPATIGTAMGLKTSASGQALNAAGQPISGLYACGNNQASPFRGFYPGGGSTLGPAIVGAY
LAVQSLSKP
>SEQF1086_CAE43762.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIKLMLAGLAALMPMLSMASDYPSKPVTLIAGFAAGGPTDVMARAFAQQLAAELGVPIVVENRPGADSLLASQAVRNAKP
DGYTIYLASSAHAINPSLFKDAKFKVRDDFTPISTIGEVPNVVAIPTDLPARTLKEFIDYAKARDGQLNYATTASITYLQ
TALMLKSAGLNLQRIPYKGAAPAAVALMSGDVQFMMSGIGPMVPQIQSQKIRALAVTSAKRSALLPDLPTAIEAGLPGFT
STVWYALLAPANVPPDIVKCLNESTRAALQNPDLIAKLTAQGVEQRGSSPEELSQFLAAEEAKWMATVDELGARQQ
>SEQF1086_CAE43763.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPNTIHQDEGRPIVNSNDHDSPAESRASGVLNLTHLRTLVAVVQEGHLTRAAERLRISQPAASHHLRSLEQQFGLPLFTR
TPQGVVPTAAGLQLSEQAARLLASSLELLSTASELRGSASGRIAIGTIEDPSVHAALPSLIKWFHEHYPLIELSIESRNS
SSIRQGILTGEINAGFYVSCTNEANLREYEIGQRELVVVAPQSWRERVATATWPELAKLPWVMTTTGSAHSEITAQLFRS
HNITIRPALEVNTERLLRAMVSQGVGLGFTRREFAEAEQARGAFFIVPISVHRTTMHFAYARSAETDPLIQILSRGLATV
LPVAERLIPSTAKPAEK
>SEQF1086_CAE43764.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKDVTPARADYPWDGERDVIVIGSGCAGLSAALLAAKKSLDVVLCEKSSQVGGTTASAGGVMWIPNSREARAAGVDDSSE
QVRVYLRALMGAYYRADLVDPYLKSAPLAAQAIQEDTQVRLKLMPAMSDYHASLPGGKAGGRSLEPERFDGRRLGADFEL
VRAPIKRLMLLGGLYIDKRRIDEFLNPFGSFRNFIGVIRTLARYAIDRTRFSRGTDIGAGNAFVASALLSLRERGVPIWL
NSPMVSLVRNPQGGVAGVAICRDGKLQRIRARKGVILAAGGFPRNAALLEELAGGFPHDQSVGYEGNVGDTLQAARQAGA
AIDADLASPCWWTPTSRNKEADGSMSTVLYGYLDRSRPGMIAVNAAGKRFVNDSDSYHDIVYAMFKDGVTPDSRFYLICD
RRFVWKRGLGNLIKPYCLSLGRYVRSGYISTGRSIRELAAAIGIDPDALEVTVTRHNGFCETGVDLDFGKGGNPYNRMFG
DPRVKPNPNLLAVRHAPFFALRIYPGTLGTILGLKATADAQVVGQDGEAIPGLYACGNDMSSVFRGFYPGAGATLGPGLV
FAYRAIEHLARSSGGSAAQSA
>SEQF1086_CAE43765.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE43766.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLPVDGLIASFDVDAQKSFTPLCPDELPVPDGHAIVPELNAQAAHADLRLGSKDAHSPHAIWRATADQPMFSPVAGANV
DVRWNMHCVPGTRGFELLDGLPAPAAYDFFVWKGVEPDMHPYGSCYHDLAERQPTGVIEFLRARDVRCVLVGGLALDYCV
KVTALQLRRAGLEVVVNLAACRGIAAATCEQARRELSQAGVRTVPHAGVLVRAGR
>SEQF1086_CAE43767.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPSPEILALRWKDTCAHYSPHEWVAARNVVTANKAALADYFYECMLADPNAAFFLSDQLVKTKLHASMQDWLESVYAAA
PTEEYERTVAFQRKVGEVHARIDIPVHLVTRGACALIRRICELLDRDASLSAAQAAATCRYVADVTMTAVEMMCHAYSVS
HDRNARAEEGYRLLALSQNVGAERERQRAALLDWENQLMFGLSVGKPWDELPPIRKSEFGLWFIHKAAHAFEGAAESRSV
SSQLQHIDQLLADAQQTQPPPDQRLAILHSVRDATKAIGFLIDGLFEQAGNLESGRDTLTRLLNRKYLHVVLSKEVAYAR
KTGVPLSVLVADIDYFKSINDAHGHDAGDFVLQQVASLIASYSRGGDYTFRLGGEEFLVVLVDADGTQALNVAEALRRRI
QEKATVLPDGGEVRLTLSIGVAAHDRHPDYQRLLKRADQALYAAKSGGRNRCVLANAGPAEPSQRPDAVAQSGQH
>SEQF1086_CAE43768.1 hypothetical protein BP3508 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQTESLPRSEADTRACRALAAALRARDPSTAIHSGRVAALAGELGRAYGLDGMAIRRLELGASLHDIGKLGVADRVLHHP
GRLLGEDWTHMQEHSVLGERIIAATGLDDGAAIGRIVRHHHEHYDGSGYPDGLAGEAIPLEARLIALVDAYDAITAHRPY
RPPVPHDRTMAMLEAEQGARTDPQAFTIFARMIERSQWRAG
>SEQF1086_CAE43770.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43771.1 hypothetical protein BP3511 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MENQEIMVAFAQAIQQVTAKVSALETTVQCLIAAQPAEQREQFGAALRQAASGLLAESDQRPLTGSALSHLKLAIDAYLE
AAGQHPLQ
>SEQF1086_CAE43772.1 hypothetical protein BP3512 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSEPAIAWRRVDDYCWVGPPGWTICRVWLDGSYQYELWFSRGDAGTIYGMRASLEGAQHLYMQKLG
>SEQF1086_CAE43773.1 hypothetical protein BP3513 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPGRGKIDAERRCGLMKTEQKRGFLDRFFPAGIRPACPKCGHQGFIVLHDDAVVNADKPIAIVACASEDCHAALGVLPAS
AVWDE
>SEQF1086_CAE43775.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAHTPTMLAAAAPFMPEATGVDPALDALLAGLQAHPARIDPKYLYDALGSSLFAAITQLPEYYPTRCEAEIFATHLEAIA
RHTGPVRTLIDLGAGDCAKAERLLPCLRPQRYVPIDISTDFLGQAVARVRRAHPWLDVLPLGRDLNAGLDLPEAIDAQGR
LFFYPGSSIGNLDPDAALALLASLRAQAGVSGGLLIGVDRVKARAIVEPAYDDALHLTGAFNLNLLRHVNSVLGSDFDVR
DWTHVALYNEPRSRMEMHLQARSDIRVRWPGGQRRFQADERIHTENSYKYTIERFVDLLRRAGYGDIRYWSDARDWFSVF
SARA
>SEQF1086_CAE43776.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSIVVARFDSVPSARSAAHALVGDGFREEAISILYGDPDRTGRRMSRPAWRFGPDLRTRAARWRAIVSAAALAAIGTLG
GVIVPVLTGYGRVGMVVGAALGAYAGALAGACWMASGLRRARAEAAYAGQLARDRVVLLAVQVHPDDEEAAAALLRDAGG
LQVEKARSRWWPGARGQSTPTGWRTRAPRPPAQRTQWQP
>SEQF1086_CAE43777.1 putative phospholipase D family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATLRRGFACRLARQVAVMFMLAALGACATVPGMQGLRERRAQAGLSTDYGWQSLQRSHTIVTDATGGDGDDAMARHLAV
EAAISGAPLVAGNQVRLLADGPATYRSMLDAIAQARRYIHMETYIFEDDEAGQRFADALMAARQRGVEVAVMVDAVGTLN
TPRQWFERLKQGGIKVAVFNPVNPARAGLGWAPNQRNHRKLLVVDGQVGFLGGLNISSVYSSGSRSGSGSGRAAQAPGPA
ASRADTAPWRDTHIAVRGPAVAEIERVIQDGWLRQTGAPLGGGAVRLSVPAPGDLHVRILANEPNERDGYTVYLTLMSAF
ESARQSIHITMAYFVPDPAFVRVLADAARRGVDVALVLPGFSDSSLVWYAGRSHYQALLDAGVKLYERRDALLHAKTAVV
DGVWSTVGSSNMDWRSFALNYELNAVIVGARFGAEMEALFERDRAAAVPIDPRNWADRGADDRFMEAFSRLFERWL
>SEQF1086_CAE43778.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF1086_CAE43779.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE43780.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNWIAGRYTTFALMLIGAALTSALAVHSSRAWLWAAVPFVLLSLLGVYDLLQTRHAIRRNYPVLGNLRFLFELIRPEIRQ
YFLEDDTHASPFSRAQRSIVYQRAKQDIDKRPFGTQEDVYGDRYEWINHSMTPAHVADADFRVTVGGPECRQPYSMSAFN
ISAMSFGALSANAVLALNEGARIGDFAHDTGEGGISRYHRERGGSLVWNIGSGYFGCRDAHGAFSEEAFVKNACTPQVKM
IEIKLSQGAKPGHGGILPAGKVTPEIAEARGVPAWQDCNSPSSHSAFDSPVGLLHFVARLRELSGGKPVGFKFCVGHPWE
WFAIVKAMLQTNITPDFIVVDGAEGGTGAAPVEFVDHVGTPLREALRLVHNTLIGVNLRDRIKLGASGKIITAFDMARAM
AMGADWCNAARGFMFAIGCIQAQACHTGKCPTGVTTQDPLRQRALVVPDKAQRVANFHGNTLHALAELLGAAGLTHPGQL
RPHHIARRISSSEVRLLSALFPELAPGELLRGEFRHHVFQVGWGMAQADSFQPAMDISAALAALRPAGAPAHA
>SEQF1086_CAE43781.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPPVLYCNDPGRASALSLFLHPLRDVIMSINTSTLDLPSALPPIRINHKPLWAALLLVLAGAAYLLQSVGWRQSALWVVG
ALLGVTLYHASFGFTQAWRVFVSDRRGAGLRAQMVMLAVGVLLFFPFLAQGTLWGQPVSGFVSPPGVSVVLGAFLFGIGM
QLGGGCASGTLFAVGGGNTRMLVTLLFFIVGSVIATANFGWWSALPALPPTSLIKSWGLPGALLANLAVFALIAWTTTVL
EKRRHGQLISHAARTSRTPSLLQGPWPMVWGGIALVVLNFATLALAGRPWGITSAFALWGAKALDVLGGDVASWAYWSRQ
QAALAAPVRQDITSVMDIGLMLGALAAASAAGKFAPVWKVPARSLLAAVVGGLLLGYGARLAFGCNIGAYFSGILSGSLH
AWLWLPAAFLGSALGVRLRPWFGLAVEKTPAASSC
>SEQF1086_CAE43782.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQAVLTAALPVFALILTGWLAARWRVLGPSATDALNRYVVYLSLPALLFRAMAQADLRQLADYWDFTAAVAGGIALTFGA
AILACRRDGARLTDLSLEGLATSYGNAGYMGIPLCLALLGPASLAPAIITTLLTACVLFGVAIALIEFDQHRDRHWSATL
LKVARALLRNPLLAAPLLGLACAAAGITLPAGLDNYAALLGASASPCALVTIGLFLAQSQPGGDRGTVGLMVGGKLLLHP
AVTAVLAFAVFDMPPLWAWCAVLMAALPIGTGPFMLAQLYGRDARPSSRAILLSTVLSVPTITALVAWIGRQPLG
>SEQF1086_CAE43783.1 putative acetyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPQTAAPLRIVLGTWDRLREDATTVRFEVFVAEQRVPEDIELDDFDPLSVHAVAYGADGAPLGTGRLLPDGHIERMAVRK
RARGLGVGGRILDALIEQGHGDGHRMLVLHAQSHARGFYEAHGFQAEGDEFVEAGIAHVAMTRELAR
>SEQF1086_CAE43784.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRPVCARCARPRSHCLCALIPALSCRTRVLFLQHPAEARHALNTARLAALGLRQAELHVGERFDPALWRRPGMRSWLLF
PGEAAREPGPVGEGGPLLLVVPDGSWRQARGLVAGNPDLASLPRLALPADGVSAYRVRHADLPGALSTIEAVVRVLNALE
APARFDALLAPFHALVQGQVRAMGDEVYQRHHVRRAGRRGKSG
>SEQF1086_CAE43785.1 putative ribonuclease R [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAKRSKNESNNNRSTPVLPDVPADFDPDVPSREAILTALRSAGAPLSPAELAERMGVERPATLVGFERRLGAMERDGQLL
PNRKGVLLLATKLDFVAGRVQGHRDGFGFLVRDDGGPDIFLSPREMLKVLHGDRVLVKPSGEYRGKPEGAIVEVIERRTN
KLVGRFLHEHGLSIVVPEDQRIKHDILIPPSDTNGAQHGQVVSVQIMEQPTRHTQPLGRVYEVLGEIDDPGMEIEIAVRK
FDVPVDFSEPANKQAARLPDSVRKTDLKQRVDLRDVPLITIDGEDARDFDDAVYCEPVELGTGQRKRPAWRLLVAIADVS
NYVRPNDALDDDAYERGTSVYFPRRVIPMLPEVLSNGLCSLNPNVDRLVLVCDMVIPATGAKAGTVTAYQFYNAVMHSHA
RTTYTSIWEALQQPGGPAAAALGAIMPHVRHLHELYQLLSQQRRKRGAIDFDTVETRIVCNELGRIEQIVPMVRNDAHKL
IEECMLAANTCAADFMSRSKHPGLYRIHEGPTPERLQSLRDFLRTMGLSLGGGDEPTAKDYGEFLDSVRGRPDYPLLQTM
CLRSMQQAIYSPDNLGHFGLAYPAYTHFTSPIRRYPDLLTHRVIKALLEGQRYMPELEDQPIVIGRSQREHEHAVWEKLG
LILSGSERRADEASRDVEAWLKCWFVKERVGEDFSGTVTGVASFGIFVTLDTLHVEGLVHVSELGGEYFQFNDALHELRG
ERTGMRYRLTDKVQVQVSRVDLEARRIEFRLVKGTSFDALRKAAARGSDEGRRVKKAAAPKPAALKGQTAKQRRAEAKQA
SKPANTPKAAKSAGASAQKKPARARH
>SEQF1086_CAE43786.1 putative tRNA/rRNA methyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MASTQVLAGFHAVVARLRHAPESIKEIYVEASRRDKRMQTFLEQAERAGRRVHPVAAERLDGLARGTRHQGVVAVAEERS
LAVGIDEVLDVIEGPALLLILDGVTDPHNLGACLRTADAAGVHAVIAPRDRAVGLNATVQRVACGAADTVPYLTVTNLAR
TMRELKERDVWLVGTDDQAGESMHQVDARRSMAWVMGAEGEGMRRLTRETCDQLVRIPMLGSVESLNVSVASAVCLYESV
RQRQG
>SEQF1086_CAE43787.1 Cys/Met metabolism PLP-dependent enzyme [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHQNGFTTTIVHSDRDQSAEHGAVHKPMHPSSEYVYEDARELAAVFQGKAGFTYARQGTPTTTALEARITRMEAGKSTVS
FATGMAALAAIFTTLLRRGDHLVSSQYVFGNTNSLLNTLMELGVEVTMVDATDVRQVRDALRPNTRMVFTETIANPGTQI
ANLAGMGALCRERGLVYVVDNTLTSPWMFRPVEVGASLVMNSLSKYIAGHGHALGGAVTDTGLYDWSGYANIYESYRKGA
PTGWGLTQIKKKGLRDMGGTLAAEPAHRIAIGTETLALRMARHCSNALALATFLQGHPGVARVHYPGLSSHAQHQRASEL
FDGRYGGLLGVELAEGIDCFDFLNRLRIVLMATHLGDTRSLALPAAHTIYYEMGAEKRAQMGIADSLIRVSVGIEDEADL
LFDFDQALRGCLQS
>SEQF1086_CAE43788.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLIQIADLFTPAEAAQIRARLEAADWVDGKVTAGYQSAQVKHNRQLSEQHPLAQELGGLILQRLAANNLFMSAALPRKIF
PPLFNRYEGGEAFGYHVDNALRPVPGTAERVRTDLSATLFFSEPDSYDGGELVVDDTYGPRTVKLPAGHMVLYPGTSLHK
VTPVTRGARISAFFWLQSLVREDSQRSLLLEMDVAIQRLNQDTPGHASIVQLTGVYHNLLRRWTDV
>SEQF1086_CAE43789.1 DNA-binding protein Hu-beta [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNKTELIDHIASKADISKAAAGRSLDALIGAVKTTLKKGGTVTLVGFGTFAVSARAARTGRNPRTGETIKIKKAKVPKFR
PGKALKDAVN
>SEQF1086_CAE43790.1 siderophore-mediated iron transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPSPQSGRSFSSHTSLALRAGAGFTVLALHAAVIGAVFLSKTERPELLEPEAVMVSIIEAPLPQLAQAEPTPEPPTPVEE
TPPEPEPVIEPEPEPEPEPVVEPEPEPEPVVEKPPEPAPKPKPKPKPKPKPKPQPKPEVPPEPKKIETPPAGAPQGAQQV
TQAPRQAPPPDEPIMVSSVEYQGARPMPVYPMASKRLREEGRVVVLVEISTQGLVDRASIDTSSGFSRLDESALAAARKA
RFKPLTRNGVAYPAKAKLPFDFVMRN
>SEQF1086_CAE43791.1 MotA/TolQ/ExbB proton channel family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNAINTATLVAQAATPSAAATPDAPAAAPLAQQAGEAAGAAAQTGAEALNQAAQAGTEAVNQAAQALSAAAPAVPPAPL
ATPDMGFLHFVAQSDFVGKTLFIILIVMSLVTWYLIVVKVVGNMGMRKRAAHFLNKFWNASSLEQVENEIVTHGARDPFS
HLASHAMHAQQHHAKFGATKLEESGSNGEFVSRTMRKVIDEETAKLENGLTVLASVGSTAPFVGLFGTVWGVYHALVGIG
LSDGVTINRIAGPVGEALIMTGLGLAVAIPAVLAYNAFVRNNRVFLSRLDAFAHDLFAFLTTGQQVAVSDGKVRALRRQH
GRGSE
>SEQF1086_CAE43792.1 biopolymer transport protein ExbD/TolR [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAFGSFDNKGSGSHTVSEINMVPLIDVMLVLLVIFIITAPLLAHSIRINIPQVSAEQIEEEPKTIDLAIDANGALFWDEK
PVSIDDLPNRFKAIAGDKPQAEIRIRADQATRYETLAQVMASARRSGMTRIGFITSPAPQGAPGEAGASAAPAAP
>SEQF1086_CAE43793.1 response regulator protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRVLVIEDDTTLGHALQEFLADQGYAVDWLTEGDKVLGALAGQPYDLLLLDLNLPGMSGLDVLRQLRQDGNQVPVLILTA
RDGLDDRVAGLDAGADDYVTKPFDLPELAARVRALGRRRSGQAQPQIEVGPLVFDTVGREVRANGTRLALSVRELSVLEM
LMARSGRVVTKRQIVNSLSAWDADFSENAVEVYVYRLRKRLEGSGASIQTVRGFGYMLDVEAA
>SEQF1086_CAE43794.1 sensor kinase protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNSLPPTPPPPDPVGWKLPRGSLARHLVLRLMPPVLLLVLLDLAATWVITHKIDMSIWMLEDFFWLMVVGQIVLIALFTG
VIIRGVRSGLRSVNHLAEEIRQRSIDDMQPMEVAGLPAEIAPLVTHINDLLGRLDASLAAQRRFIGHAAHQLRTPLSGLR
LESELMLARPLPEDVRMRAERIKAVSDRMIRLGQQLLVMARADPDARPQDRFIRLDLCEWVRASGAEWIPRVRAAQAEID
LVAPEQPVWIDGDPLLLDEMLGNLIDNALRYGKPRGRICLTIGVNPPALIIEDDGPGISPQERDSVFEAFYRAPDAKAGG
SGLGLAIVREIAHAHGAWWKLSSRPEYAGTRLSVVFPGPRIGTQLTRQERAS
>SEQF1086_CAE43795.1 putative potassium uptake protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTHTAAGAPRDAKTAIHAPSSRMALMLGALGVVYGDIGTSPLYTLRACLNTIDDLQPAHVLGVLSILFWLLMIVVSLKYV
TLVLRADNRGEGGTLALLELAVRGREGRARWLLIVLGIFGAALFYGDSMITPAISVLSALEGISIVSHTLEPWVVPVALV
VLVALFAIQSHGTGAVGKLFGPIMALWFATLAVLGGYQIWLTPEVLAALNPVWALRFIAEFPVMSFLLLGAVVLALTGAE
ALYADMGHFGRPAIRRAWFAMVLPALTLCYFGQGALLLRDPAAIRNPFFLMAPEWGLAALVGLATVATVVASQAVISGAF
SVTRQAVQLGFWPRMQILHTSAVEKGQIYLPQVNALLLCAVLVLVLLFRNSENLAAAYGFAVTGTMLTTSVLAFAVLPRD
STGGKRVLWMVLLGALLVIDILLFGANIFKIHEGGWLPLLVGVVVFTLMMTWRRGRRLLADMQARDRQPLREFMTQLEAF
PPARVQGTAIFMTMNAGNVPPALLHNLKHNKVLHDHVLFLSIRVADVPYVSEDERFEMHKISASSWQASINYGFKEDPDV
PDALRQVAEAYPEIDLEPMRTSFYLSRQTVVAARRPAMARWRRALFAFMARNSTRSTRFFKIPPNRVVEMGMQVEL
>SEQF1086_CAE43796.1 argininosuccinate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTILPNLPTGQKVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEPDYDEIPRRAMQYGAEAARLVDCRAQLVAE
GIAALQAGAFHISTAGLTYFNTTPIGRAVTGTMLVAAMKEDGVNIWGDGSTFKGNDIERFYRYGLLTNPDLKIYKPWLDQ
TFIDELGGRAEMSEYMRQAGFDYKMSAEKAYSTDSNMLGATHEAKDLELLSAGIRIVQPIMGVAFWQDSVQIKAEEVTVR
FEEGQPVALNGVEYADPVELLLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGLALLFIAYERLVTGIHNEDTIEQY
RENGRKLGRLLYQGRWFDPQAIMLRETAQRWVARAITGEVTLELRRGNDYSLLNTESANLTYAPERLSMEKVENAPFTPA
DRIGQLTMRNLDIVDTREKLFTYVKTGLLAPSAGSALPQIKDGKK
>SEQF1086_CAE43797.1 ornithine carbamoyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTPPTTQNGPLRHFLQFKDFSPAEIAYVLERTRIIKDKFKRYEPHMPLHDRTLAMVFEKASTRTRVSFEAGMYQMGGSVI
NLTSNDSQLGRSEPIEDTARVISRMVDIVMIRTFEQTRIERFASHSRVPVINGLTNEYHPCQILADIFTYIEHRGPIAGK
TVAWIGDANNMSYTWLQAAEMLGFTLHVSTPAGYELDPARIGAPAAGVLKQFKDPMQACQGAHLVTTDVWTSMGYEAENE
ERRAAFADWCVDAEMMAAADPQAVFMHCLPAHRGEEVTGEVIDGAQSVVWDEAENRLHVQKALMEFLLLGQLA
>SEQF1086_CAE43798.1 putative acetylornithine aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSALANIYARLPVSFTHGRGVWLWDTGERRYLDALAGIGVSCLGHGHPGLVAAISEQAARLIHTSNIYEVPQQAALARR
LAELSGMSEVLFNNSGSEANEAAIKLARYYGYKQGNTHAHIITMDSSWHGRTLATLAATGSDKARQGFGPMPSGFIQVPY
NDLPAIRAAGEAEPRVTAVLLEVLQGEGGIRPSDMAFLQGVRQLCTERGWLLMIDEVQSGIGRTGKWFAHQWADIRPDVM
TLAKGLAGGVPIGAMLAAGPAAGVFAPGSHGTTFGGGPLACAAGLAVIDAIEQEGLLGNAHEVGAHLHAALASELAGAPG
VIEVRGRGLMLGIELDRPCGILATRAMEAGLLINVTRERVVRLLPPLILSGEEADQIVRILVPLIKQFLAQQQ
>SEQF1086_CAE43799.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATRVKQFVIHGVTESGVRFRPSDWAERLAGVMAQFRPPGSAGNHLTYSPYVLPVVIDGVRSVVVDQRLRELEPLAYKFV
VDFAHDNHLKTEEREA
>SEQF1086_CAE43800.1 LysR family regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDRFDQYRVFAQVAEMGSFIKAAHTLELPRASVSAAVQQLEGQVGARLLHRTTRQVRLTADGTQLLERIRPLLAEVEDID
QLFQASQRQAAGRLNIDVPSRIARRLVAPALPALLRRHPRLQLALGSGDRAIDLVREGVDCAVRIGVLHSSSLVVRPLGS
LALINCASPAYLREHGEPGHPDELAAGHWTVGYASPQTGRALPWECATPRGGTNLVEAASRVVVNNAESYIACCLAGLGL
IQIPRYDVQHLLDGGQLVEVMPDRRAASMPVALLYPHRRQRSRRLAVFLEWFEALMQPHLEA
>SEQF1086_CAE43801.1 putative short chain dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADHSIQGKVALIAGGAKNLGGLIARDLAAHGARAIAIHYNSPASKADADATVAALQAAGAQAVALQGDLTTAAAVEKLY
ADAVAAVGRPDIAINTVGKVLKKPFSEISEAEYDEMAAVNAKSAFFFLKEAGRHVNDHGKIVTLVTSLLGAFTPFYSAYA
GTKAPVEHYTRAAAKEFGARGISVTAVGPGPMDTPFFYGQESPEAVAYHQSAAALSPHSPTGLTHIEDVVPFIRHLVSDG
W
>SEQF1086_CAE43802.1 putative D-isomer specific 2-hydroxyacid dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTKHRIIQVGSLAGSPTANRRLADEYDVLELWQQADRAAALARHGKGVTALVTSANFGADAALIDALPDLKAICSWGVG
YETIDVDAARKRGVLVSNTPDVLTDCVADLAWGLLISGARRMAQGDRFVRAGQWGQVHGSIPLGTRVSGKNLGIIGLGRI
GEAIARRGDGFDMQVRYHNRRRRDDVSYGYESSLADLARWADFLVVATVGGPSTRHLVNQEVLEALGPKGLIINIARGPV
IDEAALVAALQAGKLGGAALDVFEHEPLVPDALKASDDTVLLPHISSATFETRMAMENLMLDNLASFFKTGDVITPV
>SEQF1086_CAE43803.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNKLKSLLAAAGMAACAVGAAHAASYPDKPITMIVPFVPGGSSDITARAVTPGMTKILGQSFVVENKPGANSAIGAQALA
RSTPDGYTMMVGSIGTFAINEALYKKLAYNPSKDFSYLTQAVRNPNVLVAPPSFPANTVAELIDYARKNPGKVSYASSGT
GSSDHLSAILFRQRTDTTGVDVPYKGGGAAIADLLGAQVNVSFQNLGAVQTHIKGGKLKALAITGDKRVGELPDVPTLAE
AGVKDMVVYSWQGFAVPKDTPPAIVKQLAEALRTTLRDPQVEKTLQGLGFEVVANTPAEFSRFQQDEVKRWREVIEKGGI
QLE
>SEQF1086_CAE43804.1 hypothetical protein BP3545 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFAIPTNRVRGVLAALRQGSVRARLQEQGARPSGNTLEPFKAFMADEARKRAQVVRQSGATVD
>SEQF1086_CAE43805.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTTPVTPDDLQRSVIAVQPLARHADLTLNPAANQAVLRHLEAGGVRSVMYGGNANFYHVQVSEYAQLLDFLAESAGPDT
WVLPSAGPDYGKLMDQTAILRTRDFPTAMLLPMSFPYTDAGLADGIRRFSDAMDRPAVVYIKSSDYLAPATVARLIGEGR
IAALKYAVVREDPARDPYLDALLKEVDPRWIVSGIGERPAIVHFRQFGLRSFTSGSVCVAPRGSMRLLHLLHQGDFEAAE
QVRAAYIPLEDCRDGISPIRVLHDAVTLAGVADMGPMLPLLSGLDPADRERVAPVARALLAGDRQ
>SEQF1086_CAE43806.1 GntR family regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MILARGAPRDDVRWRNRSDQSGVPVARKQESAKSAAVDADGGVALHLERGQRVRLADQLYGQIFDQIASGRLNVGDKLPS
EHEICEKFGVSRPVVREALLRLRADGLVTAHQGLGTFVSHQPAPRLKTFSDVQNVGAYLRAQEVRVALEGDAARLAALRR
TDEQLHKIGEAHAAFVEELEHGRVSPEADLAFHASIAEASGNDFYLGVLETIHESISGFMRLTLSLTRTGSRQRAQRVAD
EHAAILGAIREQDAERARIAMQFHLGQARHRLVDRDKD
>SEQF1086_CAE43807.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIVPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43809.1 AraC-family regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDKPAAEAISVAHARAPAVVTRRNRYPADAHVKPHWHDRAQFLCGSSGVMRVATRRRLWVVPPMRALWIPARTVHEIRMS
SAVDMRSLYIDAALVRGMPDDCAVLDMTALMRELVVRASTDAPSTRDAPQRHEASDGALDEEYGLLSALMVAELRRLPRC
GLDLPLPESAALRGLCERALADLSAFDSAQAQARRLKLSARTLYRRFLDETGLSFARWIQQARLLDAVRRLGDGQAVTDV
ALDLGYQSPSAFTAMFNRALGCSPREWRRLGEGRE
>SEQF1086_CAE43810.1 putative antioxidant protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEFLSTIKDQLPDWAKDIRLNLDAVIARSTLAPEDALGAALSAAFAARSQLLIDAFKGALSETDANAALTASALMGMNNT
WYPYVEMTGDAQLKSLPAQLRMNAYATHGGVDKKRFELFALAASIIGKCHFCVQSHYENLKKDGLTVEQLRDAGRIAAVV
NAAALALAAQGK
>SEQF1086_CAE43811.1 alkyl hydroperoxide reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTVGDKLEPFKVTGVKPGFNQHEENGVSAFEDITESSFPGKWKVIYFYPKDFTFVCPTEIVGFNKLAKDFEDRDAVLLG
GSTDNEFVKLAWRREHPDLNKLGHYQFGDTTGALIDQLGVREKGAGVALRATFIVDPDNTIQHVSVNNLNVGRNPEEVLR
LLDGLQTDELCPCNRSVGGATL
>SEQF1086_CAE43813.1 tresponse regulator protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTQNTTPTRKILVVDDDPRLRDLLRRYLSEQGFNVFVAEDAKEMGKLWQREHFDLLVLDLMLPGEDGLSICRRLRGGHD
NTPIIMLTAKAEEIDRIVGLEMGADDYLSKPFNPRELLARINAILRRRGTEEHPGAPSQENESIAFGPYVLNLSTRTLTR
NGEQVPITTGEFSVLKVFARHPKIPLSRDKLMELARGREYEAFDRSLDVQISRLRKLIEPNPSKPVFIQTVWGLGYVFVP
DGGS
>SEQF1086_CAE43814.1 putative acetyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDLNLLAFETSSSRCGVALLTEHGAEPVVAVLEHEGAQEHAERLLPMARELLARAGLAPEALQAVAFGQGPGGFTGLRVA
CGVAQGIALGLGIPVLPVVSHEAVAEVSGAAADDAVVVALDARMEEVYLAVYLRGDGGQWQALQAPLLIAAGEVVPWTVH
HLDAWSARAGRALRVRMAGDAWQVYAASMAAPPGWVRVQAERPQAQAVARLARRAWRDGGGVAAELAAPLYVRDKVAFTT
AERERGQGGNPRAVSALAATQMLPMAQRDLDEVAELEAQVQSFPWTRGNFADALQAGYPACVLRQDGRLAGFCVMMAAPD
VVHLLVIAVPRHLHRQGLGGLMLGWCERQARARGLAGVLLEVRPSNATAVQFYERHGYLRIGRRKDYYPAGKGKREDALV
MQKTLGEATVGNERA
>SEQF1086_CAE43815.1 bacteriophage-related DNA polymerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAPEAAAPAAPRPNPLQRIWLREIGIEKTWLPAPLASAAGAVAPAAPAAEAANAAVATAEAVRPAAATPRADGPAASPT
RAPRPPVAAPQRAEPAAEADGQAARAAVAARAAGADLGQLQQLVQDCTACGLCQGRRHAVFGMGAQPARWMVVGEAPGEQ
EDRQGLPFVGRSGKLLDAMLQSVGMSRERDVFIANVIKCRPPGNRNPKPEEIAACSPYLRRQIALLNPERILVLGRFAAQ
TLLNTEATIGNLRGRVHSLQTDEGRSIPVVVSYHPAYLLRSPAEKARAWQDLLLAARG
>SEQF1086_CAE43816.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRGFYLVMAAQAFSSLADNALFIAAIALILELSGPDWMAPMMKWSFALAYVVLAAFVGAFADSFPKGRVMFITNALKVA
GCMLMFSYASIGVPATYQTYLVCAAYGLVGIGAAAYSPAKYGIVTEMLPPDLLVKGNSWIEGLTVLSIIIGTVLGGVLIS
PHVSSVLLAYPWLNKLVHTPAEAAILVIALVYVIAALCNLLIPPTHVRYPPQQRSPFKLVRAFSGYVCVLWRDKLGQISL
AVTTLFWGAGATLQLIVIEWGRSHLGYRLDQASVLMGVAAVGTVVGSILAGRIPLRKALSVLPVGAAMGLVVLLMPLVYS
PWSVYLLLVTGGLAGFFVVPMNALLQHRGHVLLSAGHSIAVQNFNEQLNILLMVAIYTVLLWLELPINIIIVIFGLIVTV
LMVVFIRWSRRNLSADPALREQIGQKGHGKALDSAH
>SEQF1086_CAE43817.1 putative chromosome partition protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRLTQLKLAGFKSFVDPTVIPVPSQLVGVVGPNGCGKSNIIDAVRWVLGEAKASELRGESMQDVIFNGSGNRKPAARASV
EMVFDNTEGRAAGQWSAYSEIAVRRVLTRDGTSSYYVNNQQVRRRDIHDIFLGTGLGARGYAIIGQGMINRLIEARPEEL
RVFLEEAAGVSRYKERRRETENRLSDTRENLTRVEDILRELGSQLDKLEAQAEVARKYRELQADGEKKQFALWLLKETGA
RDERERKNQDMARAQNDLEAAIAGLRAGEAELESRRQAHYAASDAVHAAQGQLYEANAQVSRLEAEIRHVVDSRNRLQAR
REQLQAQIAEWNTQQEHCTEQIALAEEDLATGAARTEEARAAAEDAQAGLPAIEARVRDAAAGRDDMRAALARVEQNLAL
VAQTQRDADRQLQTLEQRRERLQQELRELHTPDPERLEQLAGDRLAGEDQLEAAQAELATLEGRVPEADAERSRAQAAAQ
QDAQGLARLEARLAALVKLQEDVQKQGALEPWLAKHELAGLGRLWQKLHIEPGWETALEAALRERMAALEVRSLDWARAF
ADDAPPARLAFYQVPVAAPAPAAPQGQTPLASLLRVTDPDLRTLLNQWLAGLYTAADLTQALGGRASLPAGAAYVVKAGH
LVDAHSVRFYAPDSEQAGLLARQQEIENLQREIKAQQLIADQARAAVARAEAAWQQVSQAIAPARQRVVEVTRRVHDIQL
EHSRLQQQAEQSGERAARLRQDLEELAAHEEDLRATREEAEVRFEALDGELAEHQSRFSDAEIDGETLSAQADAARTRLR
ELERAAQEAEFAERGVQVRITDLQRNRQLAADQSQRAATELQQLETDLVDLDASASQAGLQDALELRAEREEALTRARLE
LDNLSALMRGADEERMQQERGLEPLRARITELQLQEQAARLAEEQFTEQLNAREVDRETLARELAEMPDEWRKASWLQSE
VGRISRQVDALGPVNLAALDELNTSRERKTFLDAQQQDLLTAMETLEDAIRKIDRETRELLQETFNTVNRHFGELFPKLF
GGGEARLTMTGDEILDAGVQVMAQPPGKRNSTIHLLSGGEKALTATALVFALFKLNPAPFCLLDEVDAPLDDANTERYAN
LVSNMSEQTQFLFISHNKIAMQMAKQLIGVTMQEQGVSRIVAVDIDSAVQMAAEA
>SEQF1086_CAE43818.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDLQIGLIALGVLLILLVLGFNWWQDRRVRRRMQAHFPSTEQDPLLGAGAQDRTAAGATRREPGMGGAAAGAAPAAAPA
NPDTDDQEEPDPACEVVIEIHFSEPVRGADLLPYLQSLRQAGRKPLRVFAATAEQRHRARIHPEESYANMQLAVLLANRS
GPLTAIEWSQAWARAQDLADRFEASVEGPDQQEVLEQAARLDDTCAALDTQVGLTLLLGVAQPAAEVLAVARDLGFAADG
ARLAWLADNGAVRFTLARADGAAFDAGMGGIERLYLLLDVPCSPADQRAFGRMVDVGRDLAARLRAELVDDQGRPLQDGA
DAVIDERLQVLFEQLDQAGLPAGSARAQRVFA
>SEQF1086_CAE43819.1 DNA ligase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAQAGPTPQQAIARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELVTPDSPTQRVGAAPLAEFGSVRHA
VPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEYFCELKLDGLAISLRYEEGRLAQAATRGDGQTGEDVTANIR
TIKGVPLRLHGAPRVLEVRGEVLMNRAEFERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHG
LPEGMPTRFDEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYERIGKLRADLPYDIDGVVYKV
DALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEIRRKDVRI
GDTVIVRRAGDVIPEVVGPVLEKRPADAREFVMLTACPICGSAIERPESEAIARCTGGLFCAAQRKQTLLHAAGRKALDI
EGLGEKLIDQLVDADRVKSLADIYSLTAFELAALERMGKKSAENLVAAIDQARRPALGRLLFALGIRHVGETTARDVARH
FGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQGVHPQAEAEPEGTSLAGKTFVLTGTMPNWTRD
EATRRILAAGGKVSGSVSKKTAYLVTGEDAGSKLTKAQELGVPVLDEDGLKALLGL
>SEQF1086_CAE43820.1 putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRIAMLAAACVIAVPAFAQNVATVNGKPITQKSLDEFVKLVVSQGATDSPQLREQIKQEMINRQVFVQAAEKDGVAKQA
DVQTEIELARQGILVRALMADYLQKHPVTDAQVKAEYEKIKKEQAGKMEYKVRHILVEDEKTANDLLAQVKSNKNKFDDL
AKKNSKDPGSAERGGDLGWAPATNYVQPFAEAVTKLKKGQLVDKPVQTQFGWHVIQVDDTRPVEFPAMDQVRPQLEEMLR
QQTLANYQKQLREQAKIQ
>SEQF1086_CAE43821.1 BolA-like protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSENSEQIEIISARLTALNPIILEIQDESHLHAGHEGAKGGAGHFRVHIVASCFASLTPVARHRLVYHHLQDLLPYPIHA
LALDAQAPSPDNAK
>SEQF1086_CAE43822.1 putative intracellular septation protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKKFLFDLFPLILFFVAYRYADIYAATAVAITASIAQILWLRLTGKAIEGMHWINLSVIVIFGGATLWLHSDVFIKWKPT
VLYWLFGGALLGARYLFGRNLVRRLLGKQIALPDPVWERLNLSWALFFVAAGAVNLYVAFSGHFTESQWVNFKVFGLMGL
LVAFVIAQSLWLGKHLQASDTPDQDRNED
>SEQF1086_CAE43823.1 peptide methionine sulfoxide reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEKIRKTDAEWRTQLAPEEYAVARQKGTERAFSGRYWDTSTPGIYRCIGCGTPLFASDTKFDAGCGWPSYFEPLAPERVR
EELDTSHGMVRTEVLCNICDAHLGHVFPDGPEPTGLRYCINSLSLKFEPLEDE
>SEQF1086_CAE43824.1 ABC transporter ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLIEFDQAVVATPQAQVLHGVSLRLSERRVGVIGPNGAGKSTLARLVNGLALPSSGRVLVDGLDTRNQVKDVRRRVGFVF
QNPENQIVFPIVREDLAFGLKKQGLAPAERDARIAAALERLGVGHLAERTSHTLSGGERQLVAMASVLVMAPQLVVFDEP
TTQLDLRNRNRVAEAIAALPQQAIVVSHDLDLLAGYDRVLAVVDGRIAADGEPAAVLGWYREHCA
>SEQF1086_CAE43825.1 putative cobalt transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIEPLYVAGASFLHRLPAGLKLAALALAGVGLFLLSDWRALAAVLAGAALLVWRSGVGAAAWWRQTRGLALIVLAVGLFT
GLMQGWPHAAVVVLRVAALIGLAMAVTLTTPVPALIDACERALRPAERLGLLNAAQVALALALALALRFIPEIWRNYQEI
REAQAARGLGAHPLALLVPLVVRTLKRAEEVAQAIDARG
>SEQF1086_CAE43826.1 BioY family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTKDTVLAALFAALIVVLSLMPPIPLPAIPVPVTLQTLGAMLAGAMLGPLRGALACLLYLVLAAIGLPVLPGGRGGLGV
FFGPTGGFLVGMVAGACVTGWLARRLALRAAGTWRGLAGYVAACVLGGIVVVYAVGVPWLAGVTQMGMAKAWAAVAVFLP
GDLVKAAVAAWVASRVERVWPVLGR
>SEQF1086_CAE43827.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRKHFGLSAVAAAVALSLPLIASAQVKVGVTIAATGPAASLGIPERNTVALLPKEVDGTKIEWIVLDDATDTTQAVKNSR
KLASEDKVDVLVGTSITPGSLAMVDVAAEAKVPMISVAASAKIVEPVDDKRRWVFKTPQNDALMASALADAMVKAKIKTL
GFIGFADAYGDGWLAVMQAAAKAKGIEITAVEKYGRTDTSVTGQVLKLVGAKPDAILIAGAGTPSALPQKELRARNYGGV
IYQTHGVANNDVLRVCGKDCDGMLLPAGPLLVAAQLPDSNPVKQSALAYTQAYEKTHGAGSTNTFGGHMWDAGQLIVAAL
PTALKSGAKPGTPEFRAAMRDALEGIKNLPASQGVFNMSATDHAGFDERSRVMVKVEGGKWVYQPDL
>SEQF1086_CAE43828.1 branched-chain amino acid transport system permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDSSIALILLQDGVVNGAIYALLGMALVLVFAVTRVIFIPQGEFVAFGALTLAMLVDGRVPGTAYLLPLLGGVCLLLELV
RALRTGAWGAMPKVLAGCVALLWLTDSYAAQGTSLWLNMLLTLALVIPMGPMVYRIVYQPLAEATALVLLIVSVAVHFAL
MGLALVFFGAEGWRTPAFVSGQVDLGFSTWSAQSLFVVATCALLIVALWLFFGKTLYGRALRATAVNRRGARLVGISTTM
SGSLTFTLAVSIGAMSGMLIAPITTVYYDTGFLIGLKGFVGAIIGGLVSYPVAAAGALLVGILEAFSSFWASSYKEVIVF
TLIIPVLVWRSFSSRHVDEEE
>SEQF1086_CAE43829.1 putative branched-chain amino acid transport system protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRFLLIAFIVVLAGLPLLSATPEFWITQLNYIGLAAMVALGLVLLTGVGGLTSFGQAAFVGLGAYTTALLTTQYDISPW
LALPVGLLVTAVVAFLLGLITLRLSGHYLPLGTIAWGLSLYYLFGNLDWLGKHDGIAGIEPISLFGWSLASGRHIYYLIW
VFVLLALWATRNLLDSRPGRAIRALKSGAGMAESMGVNTGIYKIVIFVWAALLACLSGWLYAHMQRAVSPSPFGLNYGIE
YLFMAVVGGAGHVWGALLGSAVILGIKDQLQNILPKLIDTNANFELIFFGVLMILVLQYASNGLWPILSGWWERVTGAAG
SRRNMAPPPQAPALPHRARPQAGELVLEVDSIRKEFGGLVAVNDITFKVRAGEIMGLIGPNGAGKSTTFNLISGVLPATR
GQVRFLGDRIDGRSAREIAKRGVGRTFQHVQLLPTMLVLENVALGAHMRSDVGVLSGALHSERAREAQLLHEAAQQLQRV
GLGDYLYEQAGNLALGQQRILEIARALACDPVLLMLDEPSLGLAPRIVREIFHIIARLRETGVAILLVEQNARAALQVAD
YGYVLETGEIVLHGPARELAGNPRVIESYLGLGKGAQD
>SEQF1086_CAE43830.1 putative aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEALYWYDGQWLTENPKLLGPSDHAFWMASMVFDGARAFAGLTPDLDLHCQRVVRSAEKMLMKPALPWQRIQELCLEAVA
RFPAGSELYIKPMFFCADGFLLPDAEQTQFVLHVFKVPLPGEQGFSACFSSFARSWPNMAPTDAKASCLYPNGQRAIREA
NLKGFDNAIMLDGAGHVAEFATSNLWIARNGRIATPVDNGTFLNGITRQRVLALLRADGVTVDERALTRADVEEADEVFS
TGNYGKVVHVNRVEARSLSYGPLARHAYRLYMDYAAGGR
>SEQF1086_CAE43831.1 putative solute-binding periplasmic protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHAPRFVRVALAALASVAALTCAPSASACEIDRPVRFSGLNWESNLVMVGIQRFILEKGYGCKTAMEIGETLPMLAALQR
GDVDVTPEVWPGQIEGAWKKALASGKVLGVGHVFTAGEGWYVPRYTVERHPDLRQAADLQRYKSTFTDPEDPAKGRIYGC
PAGWACGTLNENLLKALQLEHDYNLFAPGSGAAQKAAIMSAYKRKRDIVFYYWTPTALVGALDLVKLQLPAFDQAAYTCM
TDPRCAKPVPTEFKPNPVVTGLNADFARQAPALHRFFEALTVPDEAIGATLGWLENEKAEADDAALYFLRQYGDVWKKWV
PADVAQRVQAAL
>SEQF1086_CAE43832.1 putative branched-chain amino acid transport permease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRQLLGYAAFAIVVGILPYVGVYPIFAMKVMCYALFACAFNLLLGYTGLLSFGHAAFLGSAAYAAGHALKVWGLPTELG
LAFGVAVAALLGLAMGALAIRRSGIYFAMITLALAQMVFFFLQAHFTGGEDGLQGVPRGTLLGTIDLRNDLNLYYVVMGI
FALGYFVIWRTVHSPFGQVLKGLRENEPRAISLGYDVDRFKLVAFVLSAAIAGLAGATKTLVFVSATLSDATWQMSGLVI
LMTLIGGLGTLTGPILGAFIVVLLENKVGDFGQMLTRLTGLDWFLRLGESVTIVIGLIFVVCVMAFRRGIVGELVALRER
RQART
>SEQF1086_CAE43833.1 putative branched-chain amino acid transport permease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDLFGIPIQALLGQLLLGLVNGSFYAMLSLGLAVIFGLLNVINFAHGALYMLGAFVAWMGLSYLGLNYWIMLILAPLVV
GLFGILIEKLLLRHLYKLDHLYGLLLTFGLTLLIEGLFRSFYGVSGQPYPTPEALRGATNLGFMVLPNYRAWVVVASITV
CLTTWFVIERTRLGALLRAGTENPRLVEAFGVNVPRMITLTYGFGVALAGFAGVLAAPVLQISPLMGSNLIIVVFAVVVI
GGMGSIMGAIVTGLGLGVIEGLTKVFWPEASNTVVFIIMAIVLLLRPAGLFGKEK
>SEQF1086_CAE43834.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLHKITVALAVAGLGFAGLPAQAQGISDDVIRIGFITDMSGVYSDIDGKAGVEAIRMAIEDAGGAINGKKIELVSADHQ
NKADIASARTREWIDQQKVDMIIGGTNSSTSLAIAQVAAEKKKPFLAVGAGASDLTNAQCSPYTIHYAYDTVALARGTGS
AVVKDGGKTWFFLTADYAFGHALERDTANVVKASGGEVKGQVRAPLGASDFSSFLLQAQASDAQILGLANAGGDTINSIK
AANEFGVTATMKMAGLLVFINDIHSLGLDATKGMYLTDGWYWDQSDASRAWAKKFEDKIGRKPSMLQAGDYSAAMFYLNA
VKATGSDDGDATMKWMKSNKINDFFAQGGYVREDGRMIHDMYLMKVKSKEESKGPWDYYNVVATLPGDEVYTKLSESTCP
LLKK
>SEQF1086_CAE43835.1 ABC transporter ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSIPALEIAGLQAWYGESHILHGVDMQVGQGEVVTLLGRNGAGRTTTLRAILGLTGARQGSVRIHGTESIELPTYKIAHL
GVGYCPEERGIFASLSCEENLLLPPPVGALGGGMSLTEIYDMFPNLHERRNSPGTRLSGGEQQMLAVARILRTGANLLLL
DEISEGLAPVIVQALARMIMALKERGYTIVMVEQNFHFAAPLADRFYVMEHGQIVEHFEAAELSRKQGTLNELLGV
>SEQF1086_CAE43836.1 ABC transporter ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDDTILETKGLTKEFRGFVAVNGVDLRVKRGQIHALIGPNGAGKTTCFNLLTKFLAPTSGTIVFNGRDITRERPAQIARR
GIIRSFQISAVFPRLTVLENVRLGLQRKTGLSFQFWRSERQLAALNQPALRLLEEVDLASFAHELTINLPYGRKRALEIA
TTLAMEPELMLLDEPTQGMGHEDVARVTQLIKRVSAGRTILMVEHNMNVVSSIADTITVLARGAVLAEGPYAEVSRHPAV
MQAYMGTTNGELQGAHA
>SEQF1086_CAE43837.1 endonuclease III [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAVKRREIFARLQAANPKPTTELEYETPFQLLIAVLLSAQATDKSVNLATRKFFPRHGTPQAMLELGEEGLAEYIKTIG
LYRTKAKNAIATCRLLLERHGGEVPQSREALEALPGVGRKTANVVLNTAFGEATIAVDTHIFRVSNRTGIAPGKNVLEVE
RKLEKVVPREYLLDAHHWLILHGRYVCVARKPKCPQCGISDLCEYKLKTKA
>SEQF1086_CAE43838.1 putative ferredoxin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSCSSLVDRIDALLPQTQCTKCGYDGCRPYAQAIADGAAAINRCPPGDESGVAALAALLDTPPLPLDRARGEPGPLLVA
VIDEAHCIGCTLCMKACPVDAIVGANKRMHTVLADWCTGCDLCVAPCPVDCIDMRPAARVWSEADAQAARQRHQQRQARV
RRETAANERLMAATAEPAPQPAATESAEDAARKRSTIEAALARARARRSAQRP
>SEQF1086_CAE43839.1 intracellular PHB depolymerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLYQLHEMQRAFLRPLAAFTDASSQLFTHPYSPLAYMPMSRQLAAGCELVHRIGKEYQKPAWNLPATEIQGKRVAVIEAV
VLDKPFCRLVHFQRDVRRTAGRADPRVLLVAPLSGHHATLLRDTVRALLPAHDVYVTDWVDARMVPQDAGPFHLDDYVRY
IQAFLRHLGPDTHVISVCQPTVPVLAAISLMASANDPCQPRSMVMMGGPIDPRESPTQVNRLATTKPYAWFESQLIHAVP
APYPGAGRRVYPGFLQHAGFMAMNPDRHLKSHYDFYLDLLRGDDGDAEAHRRFYDEYNAVLDMPAEFYLDTIRTVFQEWL
PGGTWEIDGQLVRPADIRKTSLLTVEGELDDISGQGQTRAAIKLCSGIPAARKSHYTAVGCGHYGIFSGRRWRELICPKI
AAFIRQS
>SEQF1086_CAE43840.1 putative ferredoxin--NADP reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDTKYTRQTITAVQTWVPGKLFSVRVTRDPAFLFQAGQFARVGLPDSDDPQAEPSVWRAYSMVSAPEEPWLEFYSIVVP
EGQFSPRMERLQPGDALYVEKKPFGFLTIDRFAPGGDLWLLASGTGLSAYLSILRDPATWRAVDRIILVHGVRSAEELAY
RDEIEQWRSQPAFAPYFEADPRKLIYLPIATRETLPGMPQARLTTLIADGRLEQLAGQPLDPQRAKIMLCGNPAMLADAR
KLLSERGFAPGRRGIPGNLAVENYW
>SEQF1086_CAE43841.1 ferredoxin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEEDVPQDQVPFIALNVELSAEFP
SISRAKKPLEDADQWNGVQDKLQYLEK
>SEQF1086_CAE43842.1 pututative nicotinate phosphoribosyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVCRNVSRQQFRAIMIITSLLDTDLYKFSMMQVVLHHFPAAQVEYRYKCRTPGINLRPYLDEIRAEVHELCQLRFTSEEL
DYLRGLRFIKSDFVDFLGLFHLPERCIFIGEGEQPGEISITVKGPWLHTILFEIPVLAIVNEVYFRNTRRNPDWEEGRKR
LQSKMNLVLDDPALADFRVAEYGTRRRFSKVWHEEIVSTMKARMGVHFAGTSNVLLAMRHGVLPLGTMGHEYLQACQALG
PRLRDSQVFALEVWAKEYRGDLGIALSDVYGMDAFLRDFDMYFCKLFDGARHDSGDPFVWGERLLEHYRTNRADPRAKTL
VFSDSLTFPRAIELARQFAGRCKVSFGIGTNLTNDLGHEPLQIVMKMVRCNGQPVAKVSDAPEKTMCDDPAYLAYLRQVF
QLPPA
>SEQF1086_CAE43843.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSIKRFNVEKRLSDMAVYNGVAYLAGQVPDDASLDMAGQTAQVLATIDRLLAEAGTDKTKILMAQIFVANMKEFDGMNKA
WDAWVAPGNSPPRATVEARLANPDYKVEIVVTAAIG
>SEQF1086_CAE43844.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTLLIAWHSRTGAARQMAQALERGALAAALALEQPGQLRVRRQAASRTDAAALLAADGYLFCAPENLGSLSGAMKECFD
RCYYGVLDRIQGRPYGVAISAGTDGEGAARQVERICTGWRLRAAAPPLIARSGAQTPEQIAAPKQVPADVLARCEELGGL
LAATLLMGS
>SEQF1086_CAE43845.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLRWLRGRGAKAGEVAAMQARIPPDLWRRTLHAYPFLAALSEAEQQALQARAAWLLASKNINGAHGLEITDFMRLSVAAQ
AALPVLNLSPTLYEGWDEIIIYPAGFSIQRERMDEDGVMHEYIEEAVGEAWEGGPVILSWSDAAGSDGAFNVVIHEFAHK
LDLLAGQADGMPALAAHPDIDPRQWRRVLEDSLDRFAAAVEAVERAIPAHVDPESPQADPWYARLPLDPYAATDEAEFFA
VSSEHFFVEPEPLADALPQWYALLRAYYRQDPLARLA
>SEQF1086_CAE43846.1 putative GTP pyrophosphokinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSATSAPDTPTPFDDAWRQLAAAGLDDAGQRQLAHAAAWAWPRFEAQKALTGEPLASHAAGAVRILASLHTDQATRVAAV
LASLPADLNAPAPTLRNDPVASEFGVEVARLVQGARALLRLGIVARHASDSEAESGSQKEMQRKMLLAMAADLRIVLMRL
ASRLQSLRWHAETKTPCAAGFARETLDLYTPLANRLGIWQLKWEMEDLAFRFLEPERYKQIAHLLEEKRVEREAFIAEAI
ARMQEALARAGVVAEVSGRPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDDVRACYTALGLVHEMWTPLPEEFDDYISR
PKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAHWRYKEAGARGGQVAASSEYDRQLSWMRQLLAWNSDVEDE
GEAARRADQRIYVLTPQARVIELPAGATPVDFAYHLHTDLGHRCRGTRVDGQMVPLNTRLATGQTVEVIAAKSGGPSRDW
LNTQLGYLASPRARAKVRMWFNAIELQQRITQGQALVEKELQRLGKTAVNLEQLAQGLGFARADDLYVAAAKDEFSLRQI
DAVFQQPAPVAEPEPAALAHARSADSAEKSGKSGVLVVGVGSLLTQLARCCRPAPPDEIAGFVTRGRGVSIHRADCPSYK
ALAEREPERVIEVAWGKTSDSFYPVDISVRAQDRPGLLRDLSEVFARQRLNVVGVNTQSRQSLAHMVFTVEVRGGESLHK
ALDALGEVAGVTSAARR
>SEQF1086_CAE43847.1 putative peptidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHAPGNSMDTRAWLETLVAIDTTSRNSNLALIETVRDWLGRQGVQAWLAHNPERTKANLFATLPASDGAEQGGIVLSGHT
DVVPVDGQDWSADPFALREQEGRLYGRGSCDMKGFIAASLALVPAFLEMPRKKPIHLAFSYDEEVGCAGAPVMLADLRER
GIQPEGCVVGEPTGMQVVVAHKGINLFRCRVHGKAAHSSLTPRGCNAIEYAARLICRIRDLADAYKANGPYDEFYDVPFS
TMTTNQIHGGIAVNTIPELCEFSYEFRNLPGMPADAIQAEVERYVRDELLPRMRAEYTQARIDIETGAAAPGLEASEQAA
ITQLVRSLTADRVTRKVAYGTEAGLFQGIGIPTVVCGPGHIEQAHKPDEYVALDQLAACEAFLRRLGQSL
>SEQF1086_CAE43848.1 tryptophan synthase beta chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPYDLPDARGHFGPYGGVFVAETLMHALDELRAAYDQCRVDPSFIDEFNYELKHFVGRPSPVYHASRWSQRLGGAQIWF
KREDLNHTGAHKVNNCIGQALLARRMGKPRVIAETGAGQHGVATATVAARYGMECVVFMGSEDVRRQASNVYRMKLLGAT
VVPVDSGSCTLKDALNEAMRDWVTNIENTFYIIGTVAGPDPYPRMVRDFQTVIGQECLTQMPEVIGRQPDYVVAAVGGGS
NAMGIFHPYIPYENVRLIGVEAAGEGMETGRHAASLAAGQIGVLHGNRTYVMQNADGQVQETHSVSAGLDYPGVGPEHAW
LKDSGRAEYAGITDDEALAAFHDCCRIEGIMPALESAHAIAQAVKMTPALSKDKVILVNLSGRGDKDMHTVAERAGLQL
>SEQF1086_CAE43849.1 tryptophan synthase alpha chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTTDRIAAAFARVSEAGRAAALIPYIAAGDPSPQATVPLMHALVRAGADLVELGVPFSDPMADGPVVQRAAERAIAQGV
GLRRVLELVADFRRDDSVTPVVLMGYANPIERMGQRAFAQAAQAAGVDGVLVVDYPPEEVDEFAVMLAEAGVAPIFLLAP
TSTEARIEAIGRVARGYVYYVSLKGVTGAGSLDTDDVARKLALIRRHVHIPVGVGFGIRDAASAQRIAAHADAVVIGSKL
IETMEQAGAQAGADQKNEAAIAAAQQWLHTIRLALDDVKRENAPA
>SEQF1086_CAE43850.1 acetyl-coenzyme A carboxylase carboxyl transferase subunit beta [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSWIEKLLPPRINKNSDSGARRVPEGLWVKCPSCESVLYSEDLAANLHVCPKCDHHMRIGARARIDSLLDIEGRVEIGQT
TRSVDTLKFKDSRKYPERVQEAMKQTGETDALVVMSGSIRGVSAVLACFEFEFMGGSMGSVVGERFVRGVQAALENKTPF
ICVAASGGARMQESLLSLMQMAKTNAMLTRLSAAGLPFISVLTDPTMGGVSASFAFVGDVVIAEPKALIGFAGPRVIEQT
VREKLPEGFQRAEFLLKTGAIDMVVDRRQLREEIARLLALLGNESADIVAAA
>SEQF1086_CAE43852.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43853.1 5-methyltetrahydrofolate--homocysteine methyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPYPRIPFPLSAYTHGGEFVRQLDKRILILDGAMGTMIQRYKLGEADFRGERFAEHHKDLKGDNELLSLVRPDVIAEIHR
QYLEAGADVIETNTFGATSIAQGDYDLPELAYEMNLESARLARAACDAYSTPEHPRFVAGALGPQPKTASISPDVNDPGA
RNVTFDELRAAYVEQLNGLLDGGIDIVLIETIFDTLNAKAAIFAVEEAFEARGVRLPVMISGTVTDASGRILSGQTVEAF
WNSVRHARPVTIGLNCALGAALMRPYVAELSKICDTYVCVYPNAGLPNPMAETGFDETPADTSALLEEFAQAGLVNMAGG
CCGTTPEHIRAIAGKVAALTPRAVPEVPVKTRLSGLEALNIDDETLFVNVGERTNVTGSKMFARLVREEKYDEALAVARQ
QVENGAQIIDVNMDEAMLDSVACMHRFLNLIASEPDIARVPVMIDSSKWEVIETGLKCVQGKAVVNSISMKEGEEPFRHH
ARLCRRYGAAMVVMAFDEQGQADSLERRKEICGRAYRILVEEEGFPPEDIIFDPNVFAVATGIDEHNHYAVDFIEGARWI
RANLPHARISGGISNVSFSFRGNEPMREAIHTVFLYYAIEAGLTMGIVNAGQLGVYADLAPHLRDLVEDVILDRPEPVGR
SDSADERSPTERLVQFAETVKGSGAKKEEDLTWRTGSVEQRLAHALVHGITTFIVEDTEEVRQQVAARGGRTIEVIEGPL
MDGMNVVGDLFGAGKMFLPQVVKSARVMKQAVAHLIPFIEEEKRQIAAAGGDVRAKGKIVIATVKGDVHDIGKNIVSVVL
QCNNFEVVNMGVMVPCAQILQKAKDENADMIGLSGLITPSLEEMAYVASEMQRDPYFRERAMPLMIGGATTSRVHTAVKI
APNYDGPVIYVPDASRSVGVATSLMSDQAPAYLAELAQEYEDVRRCHANRKAVPLVSLAEARAARPQIDWSGYQPPRPKF
LGRRAFKSYDLAEIARYIDWGPFFQTWSLFGPFPAILDDKVVGEQARKVYEEGQAMLKRIIDGRWLTASGVVGFYPANRV
NDEDIEVYADETRSEMLFTYRNLRQQGVKREGVSNKCLADYIAPRDSGLLDYIGMFAVTAGLGIEKKEAEFQAALDDYSS
IMLKSLADRLAEAFAECMHARVRRDLWGYAADEALSNDELIAEKYSGIRPAPGYPACPEHVVKTDLFRVLDAADVGMELT
DSYAMFPASSVSGFYFSHPESQYFNVGNIGADQLADYVARSGRAEEDVRRTLAPNLG
>SEQF1086_CAE43854.1 putative outer membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKSRSLRRCAGVLACVAPLAGHAQAGAAAGQPIPELDPVVVTAARSPQLLKNVLADASVIERDTLARAGQSSLAEVLAQQ
HGIEFADSGGPQSVTSLFMRGANSNQTLVLLNGQRINNANGGGIALNALPPEAIERIEIMRGAASSLYGADAIGGVINII
TREPGDKALSAYANAGYGTYGTSRYDAGVSGAADGFSYSLSTGYGQSHGFNATNRRSFSYNPDKDSYYQNYATGTLGYEW
RPEQKVVAQVYRSRINGGYDASASYDYNDRYIQDLQAYSLASENRLTRYWKSTLRAGYVEDKNDSRAEGMFEDNNTRFRT
RQMQYLWQNDFTLAAGQTLTLAYEHLDQRADGQMSTATGIGNYTETRRHVNSYTGVYLGDFGRHHVQASLRNDNNSQFGS
HTTGGLAYGFDLTPNLRATVAANTGFRAPSFNDLYTPTSAFGYRGNPDLKPEESRNAEIGLKYQDEDSELGVVYYQTRIK
NLIQVTEDFSTVENVGRARLQGFTISGAHRFGNTRLRASLDLSNPRNEDTGKQLLRRARTVLRAGIDHRFDRLLVGAEWY
ASDERYDYGFPEEKRLGGYGLVNLTAAYDLSRNMQVQVRWNNVLGQRYTLADGYNTAGSNAFVNPSWRM
>SEQF1086_CAE43855.1 periplasmic binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAARLALRLIALTVAALAASGAAGAAPVRVVDDQRRTVELAQPARRAIALAPHAAELVYAAGAGDRLVGAVRGTDYPPA
ARQLPSVGDAMQPDPERIAVLRPDLLIGWQPAAGAPLAPIAARLGAALYYSDPRTLADIPAAIEQLGRLFGTEAQADAGA
AALRARLAALAARYAGKAPVRVFVQAGTDPLFTLNDHSIVGDVLRLCGGVNVYGQAPILAPQVTLEGVLAARPDAIVAGV
TGTADAAATLRAWQTAGVPAALRGHVYGIDADSLYRPTGRLIDAAEQLCARLDEARG
>SEQF1086_CAE43856.1 thiazole biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTEDTLTIAGRSYQSRLLVGTGKYQDFAQTRAALDASGTQIVTVAIRRTNIGQNPDEPSLLDFVPPSQFTLLPNTAGCY
SADDAVRTLRLARELLDGHDLVKLEVLGDPQNLFPNMPETLKATKTLVDEGFKVMVYCTDDPIQCRMLEDLGAVAVMPLA
SLIGSGMGILNPWNLRLIIDQSSVPVLVDAGVGTASDAAIAMELGCDGVLMNTAIAGARDPILMASAMRKAVEGGREAYL
AGRVPRKLYSAAPSSPTEGLIAAAK
>SEQF1086_CAE43857.1 putative phosphomethylpyrimidine kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNHPASSATPRGERRIPNALSIAGVDPSGGAGVLADVKAMSALSAYGCAVIAAMTAQNTQGVIGISPVPAEFVGLQIDTL
FADVPIDAVKLGMLGQEAVTLVVAEKLARWQPGHIVLDPVMVAKSGDLLLERRAVGALRETLLPLATLLTPNLPEAGVLL
DERPVETLKEMRRVAERLRNRMTHAGQRWVMVKGGHLPGNETIDLLHDGDRMIELPGHRIETPNTHGTGCTLSAALAALL
PQCPDVPEAARRAKAYLTEAIRQADRLQVGSGHGPVHHFHAWW
>SEQF1086_CAE43858.1 putative protein-L-isoaspartate O-methyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNASTLPDVEQARFNMVEQQIRPWDVLDPKVLDALFAVRRELFVPPALRALAFSDLEIPLEINAVNTRQNMLAPKIEARL
AQELLLQPTDCVLEIGTGSGYQAALLAYLAQQVTTVEIDSRLATFAQQNLQVNNVADVKVETGDGRNGWGSTEYDAILVT
GSVPVVPDALKYQLRVGGRLVVIVGQAPIMTAYRITRTTAASFETVSLFETVIKPLRGTTVSQFKF
>SEQF1086_CAE43860.1 putative cytidylyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSARFESKILSRAELVAAVAAGRLPRPLVFTNGVFDILHRGHVTYLDQAAQLGATLVVAVNTDESVRRLGKGSDRPLNQ
VQDRAALLAALGCVDAVTSFHEDTPQELIGELRPDLIVKGGDYDMDTLPETALVKSWGGRAVAIPFDFERSTTALLGKIR
QG
>SEQF1086_CAE43861.1 transposase for IS1663 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCAHLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF1086_CAE43862.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHQPVLPAFLIARWLLLLVLLAGIYFLSGFLVPALAALIIGLATWPLFQRLVRAFGGRTTLAATLALVAVIVILVVPLSL
ALSYAIKEAGNFFAWALAANKHGVDVPAWIMSLPMVGERLAEYWRTYLGEPHALGALVEIVSGEHLGNIYRMVLSATGNA
FQLLLTVLFMLITLFFVYKDGTRMVGQLDILGERVLPARWQRFSRVVPATVSSTVTGMCLIALGEGVVLGLAYWVAGVPS
PVLLGVITGFMALVPGGAPLSFTLVSLYLVGSGHLVAGIGLFVWGTVELFIVDKTLRPRLVGGPVKLPFLPTFFGLVGGV
KTMGIVGLFVGPVLMALLVAIWREWVRNVERERDQSILNPEGEEPAA
>SEQF1086_CAE43863.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAALVAQQVATLREQGFAVVRNFASPPVRQALRELALQHLAQTVDPVEYEADLKYPGAPSSRLAAGGQTVRRLLDAYGR
DQRFRDWATQAAIGAFLRAYFQDTPVLSTVHHNCIMTKHPAFGSLTGWHQDIRYWSFSDDDLVSCWLALGDERADNGGLY
FVPGSHTASFMPEQYDARKFFRDDLPQNQEWIGRAVCPELQAGDVVFFHCRTLHAARQNATDTVKLSLVHTYHPASCHPL
PGTRSAGSPGVPLP
>SEQF1086_CAE43864.1 putative potassium channel protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIRLRNFLRRIGRYFPPNWWLAALVAIDGYLFVRPVLGRAVDYPMDYWLSFDSWRDAMDAVGLLQIPRVILGAGLLLMAA
GLVLKARIAWAFSLVLLGAIGVVAGWDGGHGLLLAYTGVLIAALVCFWRRFDRASLAAGSLFAVISITSLLIYAVFGTLY
LGAEFSPKVESPATAFYFSIVSMSTVGYGDITPQTTAARLFAASIIILGITVFATSISAIAGPVIGGNLKRLVRGRISHA
MRKHHIIIAGATPLAQSVYAGMRERGNNVTVVVAPGIAHNYPEDADLVTGDPSNTAVLAEAGAAHARYVLALRDDDADNA
FIVLAAKEVAGPDTKTVAVANTAMHLAKIRRVQPDMVFSLQLLGAELLARTLSGETIDNALITDLFFTKATPSGAA
>SEQF1086_CAE43865.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43866.1 30S ribosomal protein S12 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPTISQLVRKPREVSIIKSKSPALENCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTNGYEVISYIGGEGHNLQEHSVV
LVRGGRVKDLPGVRYHIVRGSLDLQGVKDRKQARSKYGAKRPKKA
>SEQF1086_CAE43867.1 30S ribosomal protein S7 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPRRREVPKREILPDPKFGSVELAKFMNVVMLDGKKAVAERIIYGALEQVQVKTGKDAIEVFNLAINNIKPIVEVKSRRV
GGANYQVPVEVRPVRRLALAMRWLREAAKKRGEKSMDLRLAGELIDASEGRGAAMKKREDTHKMAEANKAFSHFRW
>SEQF1086_CAE43868.1 elongation factor G [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARKTPIERYRNIGISAHIDAGKTTTTERILFYTGVNHKLGETHDGSATMDWMEQEQERGITITSAATTAFWRGMAGNYP
EHRINIIDTPGHVDFTIEVERSMRVLDGACMVYCAVGGVQPQSETVWRQANKYGVPRLAFVNKMDRTGANFFKVYDQLKT
RLRANPVPIVIPIGVEDSFTGVVDLVKMKAIIWDEASQGTKFEYGDIPAELEGTANEWREKLVEAAAESSEELMNKYLET
GSLDEDDINVALRQRTIAGEIQPMLCGTAFKNKGVQRMLDAVIDYLPSPADIPPVDGQDDDGNPIKRSADDAEKFSALAF
KLMSDPFVGQLTFVRVYSGVLKSGDTVYNPIKGKKERIGRLLQMHANNREEIKEVLAGDIAAVVGLKDVTTGETLCDIDS
HILLERMEFPEPVISQAVEPKSKADQEKMGLALSRLAQEDPSFRVRSDEESGQTIISGMGELHLEILVDRMRREFGVEAN
VGKPQVAYRETIRKNCDEVEGKFVKQSGGRGQYGHVVLKLEPLPPGGGYEFVDAIKGGVVPREYIPAVDKGIQETLPAGI
LAGYPVVDVKATLFFGSYHDVDSNENAFKMAASMAFKEGMRRASPVLLEPMMAVEVETPEDYAGTVMGDLSSRRGMVQGM
DDIVGGGKTIKAEVPLAEMFGYATNLRSLTQGRATYTMEFKHYAEAPKNVADEVIAARGK
>SEQF1086_CAE43869.1 elongation factor Tu [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLSNKFGGEARGYDQIDAAPEEKARGITINTSHVEYETETRHYAHV
DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSK
YDFPGDDTPIVKGSAKLALEGDKGELGEQAILSLAQALDTYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRIERGVVK
VGEEIEIVGIKPTVKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGSINPHTDFTAEVYILSKEEGG
RHTPFFNGYRPQFYFRTTDVTGTIDLPADKEMVLPGDNVSMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKIIK
>SEQF1086_CAE43870.1 30S ribosomal protein S10 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKNQKIRIRLKAFDYKLIDQSAAEIVDTAKRTGAVVRGPVPLPTRIRRYDVLRSPHVNKTSRDQFEIRTHQRLMDIVDPT
DKTVDALMRLDLPAGVDVEIALQ
>SEQF1086_CAE43871.1 50S ribosomal protein L3 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGRKVGMTRIFTEDGESIPVTVLDVSNNRVTQVKSLESDGYAAIQVTYGTRRATRVVKPQAGHYAKAGAEAGSILKEFRL
DPARAAEFAAGAVIAVESVFEAGQQVDVTGTSIGKGFAGTIKRHNFGSQRASHGNSRSHRVPGSIGQAQDPGRIFPGKRM
SGHMGDVTRTVQNLDVVRVDAERGLLMVKGAVPGHAGGDVIVRPAVKAPAKKGA
>SEQF1086_CAE43872.1 50S ribosomal protein L4 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDLKLLNDQGQAATFSAPDTIFGRDFNEALVHQIVVAFQANARSGNRAQKDRAEVKHSTKKPWRQKGTGRARAGMTSSPL
WRGGGRAFPNSPEENFSQKVNKKMYRAGIRSILSQLAREDRVAVVDTFTLESPKTKLAAAKLKSLGLDSVLIITDNVDEN
VYLATRNLPYVAVVEPRYADPLSLIHYKKVLITKPAIAQLEEMLG
>SEQF1086_CAE43873.1 50S ribosomal protein L23 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAERLMQVILAPIVTEKATFVAEKNQQVAFRVVADATKPEIKAAVELLFKVQVESVQVLNRKGKVKRFGRFVGRRRNER
KAYVALKDGQEIDFAEVK
>SEQF1086_CAE43874.1 50S ribosomal protein L2 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALVKVKPTSAGRRGMVKVVSPKLHKGAPHAALLEKKTRGSGRNNNGHITVRHRGGGHKQHYRVVDFRRNKDGIPAKVER
LEYDPNRTAHIALLCYADGERRYIIAPRGLEVGATLISGIEAPIRAGNTLPIRNIPVGTTIHCIEMIPGKGAQMARSAGA
SAVLMAREGTYAQVRLRSGEVRRVHIQCRATIGEVGNEEHSLRQIGKAGAMRWRGVRPTVRGVAMNPIDHPHGGGEGRTG
EAREPVSPWGTPAKGFKTRRNKRTNNMIVQRRKRK
>SEQF1086_CAE43875.1 30S ribosomal protein S19 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRSIKKGPFVDAHLIKKVDAAVAGKDKKPIKTWSRRSTVLPEFIGLTIAVHNGRQHVPIYINENMVGHKLGEFALTRTF
KGHAADKKSKR
>SEQF1086_CAE43876.1 50S ribosomal protein L22 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
METTAIIRGVHISAQKTRLVADLIRGKSVAQALNILTFSPKKAAVILKKAVESAIANAEHNDGADIDELKVTTIFVDKAQ
SMKRFSARAKGRGNRIEKQTCHITVKVGA
>SEQF1086_CAE43877.1 30S ribosomal protein S3 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGQKIHPTGFRLAVTRNWTSRWFADDKAFGTMLAEDIRVREYLKKKLKSASVGRVIIERPAKNARITVYSARPGVVIGKR
GEDIENLKADLQRLMGVPVHVNIEEIRKPETDAQLIADSISQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGI
EIARTEWYREGRVPLHTLKANIDYGTSEAHTTYGVIGIKVWVYKGDMLANGELPPEAATPREEERRPRRAPRGDRPDGAR
TGRPGGRGRGPRKADAAPAPEGE
>SEQF1086_CAE43878.1 50S ribosomal protein L16 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLQPSRRKYRKEQKGRNTGLASRGTHVSFGEFGLKATGRGRLTARQIEAARRAINRHIKRGGRIWIRIFPDKPISQKPAE
VRMGNGKGNPEYWVAEIQPGKVLYEMEGVSEELAREAFRLAAAKLPISTTFVARHIGA
>SEQF1086_CAE43879.1 50S ribosomal protein L29 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKASELRSKDAAELGKELESLLKAQFGLRMQKATQQLANTSQLRNVRRDIARVRTLLTEKAGK
>SEQF1086_CAE43880.1 30S ribosomal protein S17 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSETQNTQVAKRQRTLVGKVVSNKMDKTVVVLVERRVKHPIFGKIIMRSAKYKAHDESNQYNEGDTVEIAEGRPISRSKA
WRVVRLVEAARVI
>SEQF1086_CAE43881.1 putative hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSCQHLPASHYARCAGRELHYVEWGRRDAPPLVMWHGLARTGRDFDDLAQALADRYRIICPDTIGRGLSQWSPRPAQEYC
LDFYATLACELLDRLGLSGVRWIGTSMGGAIGMHGAATALRGRITHLVLNDIGPTLPAPAIERILAYAGAPPAFDTVGEL
EAWLRSAYRPYGWLSDAQWRRMAETSIRRLPDGRVTTHYDPAIVGQFRHHPTDYEPWSEYDSLRIPVLLLRGADSDLLLP
EVAHAMTRRGPRARRIDFPDCGHAPALNVTAQIQAIADFLAAPAALA
>SEQF1086_CAE43882.1 putative aldehyde dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYEQLALYIDGEFLTGDGRRTQDVVNPATLEVLGQLPHASEADLDRALAAAQRAFETWKRTSPMERAAILRKVGQLSRDR
AQEIGRNMTLDQGKPLAEAVGEVASCSEHADWHAEECRRIYGRVIPPRNPDVRQFVVREPIGVCAAFTPWNFPYNQAIRK
IAAALGAGCTVVLKGPEDSPSAVMAIARMFHEAGLPKGCLNIVWGEPAKISDYLIRSPIVRKVSFTGSVPVGKQLAALAG
AHMKRVTMELGGHSPVLVFDDADVDRAAEMLARFKVRNAGQVCVSPTRFYVQNGAYEQFLARFTEVLKNIKVGDGLEKGT
DMGPLAHERRVPAMSTFVDDALKHGGKVVLGGDAPDRKGYFFSPTVVTELPDNAMLMTEEPFGPLAPVVRFTDTDEVLRR
ANSLPFGLSSYVFTNSLKTATKVSNALEAGMVNINHFGSALAETPFGGIKDSGIGSEGGLETFDGYLVTKYITHI
>SEQF1086_CAE43883.1 50S ribosomal protein L14 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIQMQTTLDVADNTGARAVMCIKVLGGSKRRYAGIGDIIKVSVKDAAPRGRVKKGEIYNAVVVRTAKGVRRKDGSLIRFG
GNAAVLLNAKLEPIGTRIFGPVTRELRTERFMKIVSLAPEVL
>SEQF1086_CAE43884.1 50S ribosomal protein L24 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNNIRKGDEVIVLTGRDKKRRGTVLARVDADHVLVEGVNVVKKHVKANPMANNPGGIVEKTMPIHVSNVALFNPATGKGD
RVGVQEVDGRKVRVFRSNGAVVGAKA
>SEQF1086_CAE43885.1 50S ribosomal protein L5 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRLQEFYKSKVVADLQAKFGYKCVMEVPRITKITLNMGVSEAVADKKVIEHAVSDLTKISGQKPVVTKTRKAIAGFKIR
ENYPIGCMVTLRGQRMYEFLDRLVAVALPRVRDFRGISGRAFDGRGNYNIGVKEQIIFPEIEYDKIDALRGLNISITTTA
KTDDEAKALLTAFSFPFRN
>SEQF1086_CAE43886.1 30S ribosomal protein S14 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAKLSLINRDIKRAKLADKYAAKRAELKAIIDDQSKTDEERYQARLKLQQLPRNANPTRQRNRCVVTGRPRGVFRKFGLT
RHKLREMAMKGEVPGMTKASW
>SEQF1086_CAE43887.1 30S ribosomal protein S8 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSMSDPIADMLTRIRNAQQVDKTTVTMPASKLKVAIATVLKDEGYIDGYSVKGTQAKPELEITLKYYAGRPVIERIERVS
RPGLRIYKGRTSIPQVMNGLGVAIVSTSRGVMTDRKARANGVGGEVLCYVA
>SEQF1086_CAE43888.1 50S ribosomal protein L6 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRIAKYPVELPKGVEASIQPDQITVKGPLGILVQSLTGDVNVAQEDGKLTFVVANDSRHANAMSGTLRALVANMVTGVS
KGFERKLNLVGVGYRAQIQGDAVKLQLGFSHDVVHQLPAGVKAECPTQTEIVIKGPNKQVVGQVAAEIRKYREPEPYKGK
GVRYADERVVIKETKKK
>SEQF1086_CAE43889.1 50S ribosomal protein L18 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDKKVSRLRRAVPTRRKIAQLRVHRLSVFRSNLHIYANIISPEGDRVLVSASTLEAEVRAQLGGAGKGGNATAAALVGKR
VAEKAKAAGIELVAFDRSGFRYHGRVKALAEAAREAGLKF
>SEQF1086_CAE43890.1 30S ribosomal protein S5 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MATKVQGKHAAEKENDDGLREKMIAVNRVSKVVKGGRTMSFAALSVVGDGDGRIGMGKGKAREVPVSVQKAMEQARRGMF
KVALKNGTLHHTVVGKHGASTVLISPAAEGTGVIAGGPMRAIFEVMGVRNVVAKSLGSSNPYNLVRATLNGLRASLTPAE
VAAKRGKSVEEILG
>SEQF1086_CAE43891.1 50S ribosomal protein L30 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAQKQIKVTLVRSVIGTKQSHRDTIRGLGLRRINSSRVLVDTPEVRGMIHKVGYLVSVSEA
>SEQF1086_CAE43892.1 50S ribosomal protein L15 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDIQLNTLKPAEGSKHAKRRVGRGIGSGLGKTAGRGHKGQKSRSGGFHKVGFEGGQMPLQRRLPKRGFTPLGQHLYAEV
RLSELQLMEAEEIDVQALKAAGVVGQSVRYAKVIKSGELSRKVVLRGITATAGARAAIEAAGGSLA
>SEQF1086_CAE43893.1 preprotein translocase SecY subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAKAQALGKTGARYGDLKRRLVFLVLALVVYRLGTHIPVPGINPDALADLFRQHEGGILGLFNMFSGGALSRFSIFALGI
MPYISTSIIMQLMSVVVPSLEALKKEGEAGRRKITQYTRYGTVVLALVQAVGISVALESQPGLVIDPGMLFRFTTVVTLV
TGTMFVMWLGEQITERGLGNGISILIFAGIVAGLPSALAGLLDLVRTNSMSVLSALFIVALVVLVTAFVVFVERGQRKIT
VNYAKRQVGNKVYGGQSSHLPLKLNMAGVIPPIFASSIILFPATITSWFSSGERMAWLRDLAAALEPRQPLYITLYSVAI
IFFCFFYTALVFNSRETADNLKKSGAFVPGIRPGEQTARYIDKILMRLTLAGAIYITLVCLLPEFLVMRWNVPFYFGGTS
LLIIVVVTMDFMAQVQAYMMSHQYDSLLKKANFKGSGLPMR
>SEQF1086_CAE43894.1 translation initiation factor IF-1 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKDDVIQMQGEVLENLPNATFRVKLENGHVVLGHISGKMRMHYIRILPGDKVTVELTPYDLTRARIVFRSK
>SEQF1086_CAE43895.1 50S ribosomal protein l36 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKVMASVKRICRNCKVIKRHGVVRVICTDPRHKQRQG
>SEQF1086_CAE43896.1 30S ribosomal protein S13 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARIAGINIPPQQHAEIGLTAIFGIGRTRARKICEAAGVPVTKKVKDLTDAELERIREHIGVFAVEGDLRREVQLSIKRL
IDLGTYRGMRHKRGLPVRGQRTRTNARTRKGPRRAAASLKK
>SEQF1086_CAE43897.1 30S ribosomal protein S11 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAKASTSGASRVRKKVKKNVSDGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSRKSTPFAAQVAAETAGRVAME
YGIKTLEVRIKGPGPGRESSVRALNALGIKISSIADITPVPHNGCRPPKRRRI
>SEQF1086_CAE43898.1 30S ribosomal protein S4 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARYIGPKCKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGLQLREKQKLKRMYGVLEKQFRKYFVEA
ERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVSHRAIELNGHTADIASMLVKAGDVISIREKAKKQGRIRESL
DLAASIGLPQWVEVDASKMTGTFKSAPDRADVARDVNESMVVELYSR
>SEQF1086_CAE43899.1 DNA-directed RNA polymerase alpha chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTQGFLKPRSIEVEPVGAHHAKIVMEPFERGYGHTLGNALRRILLSSMTGYAPTEVQMTGVVHEYSTIAGVREDVVDIL
LNLKGVVFKLHNRDEVTLVLRKNGAGAVVASDIELPHDVEIINPDHLICNLTDAGKIEMQVKVEKGRGYVPGNVRALSED
RTHTIGRIVLDASFSPVRRVSYAVESARVEQRTDLDKLVLDIETNGVISPEEAVRQAARILMDQISVFAALEGAGDAYEP
PVRGTPQIDPVLLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLAARGLTLGMKLENW
PPLGLERP
>SEQF1086_CAE43900.1 50S ribosomal protein L17 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRHGNGLRKLNRTSSHRLAMFRNMAVSLITHEAIKTTLPKAKELRRVIEPLITLGKEPTLANKRLAFARLRDRDAVVKLF
AEIGPRYANRNGGYTRVLKMGFRQGDNAPMAFMELVDRPEVDASEADSDAE
>SEQF1086_CAE43902.1 putative periplasmic divalent cation tolerance protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLRDDDVVLVISNAPDMLLAKRMAHVLVEDGLAACVNLGAPVLSVYRWKGEVEGADEIPLWIKTTYARHQAVVQTLAQLH
PYEVPEIIVLPVIGGIASYLDWVREQSSGVDSQ
>SEQF1086_CAE43903.1 thiol:disulfide interchange protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMQYGHASATGHGASATGRAAAAGRWLAWMLALALVLFARPAAALTEDDFLPPEQAFVFSAAMADPATLVLNYRIAPEYY
MYRERFGLSASPAQAVTLGEAAYPQGKVKYDPTFDKDMEVFYGTVAVRVPLSQGNGQPFTLTVTSQGCADAGLCYPPMDN
TVQLTPVTGGYALAAGTASAPQGGGTFDSLLEAGDTRLADFIGGGGWLKTAGVFLLLGMLLAFTPCVLPMVPILSSIVLG
GAQAQRPSRWRGLGLAAAYVFGMSVVYTALGVAAGLSGAGLAAWLQTPWILSLFAILLAVLALAMFGAFTFQMPAGLQAR
LSERSNRIPGGRVTGALVMGALSALIVGPCVAAPLAGALLYISQTGDVILGGAALFAMAWGMGIPLLLVGASAGTLLPRT
GPWMESVKRVFGMLLLGTAWWMLIPVVPTWVQMLGWSFLAVVGAVMLRAFDALPAGSGAPRMFAKGLGLLLALAGAAWLI
GALSGGRDVLAPLSHLAARAPAGGAVAAAGPAAVDKTRFVRVRSNAELDALLARSTQPVMLDFYADWCVSCREMEHFTFS
DPTVAARMSQMLLVQADVTKNNADDRALLKRFRLFGPPGIMFFEPGGKLIEDIRVVGFQDARRFAGVLEQVADRSGAPGP
AQAGS
>SEQF1086_CAE43904.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTAIASPANVGRVYLQLLLVMAAWGVNLVAVKYLTFHMDVQVVAAVRIVVAFVAVSAILLWRLHGVPRLSLRQFGWLAC
AGLLVVYAHQILLVNALRLTPAANATLIMATSPLFSVVLAAFFYRERLTASRIGGAALGLGGVALVVAGGDGVLASVGRG
DVLALCAVIVFVIGGLIIQRVSRALDPLTILWYMYLVGAVTLSAHAAFSPATYLASSWTLEPWPWLVVLFSSVIASGVSN
LLWNAGIARLGMSRAAMFVNWLPIFGLLAAAVFLGERITALHFAGLACVLSGTWLGLRTAPAPAAGQADARPARARRA
>SEQF1086_CAE43905.1 putative delta-aminolevulinic acid dehydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPQIISAAFPVSRPRRLRRDDFTRRLVRENTLTANDLIYPVFVTEGKGIQQAVPSLPGVVRYSLDTLLPVAEQCVKLGI
PVLSLFPAIEPALKTPDGIEAANPEGLIPRVVGELKKRFPELGVLTDVALDPYTSHGQDGVIDPAGYVLNEPTVEILIKQ
ALVQAAAGVDIVAPSDMMDGRIGAIRQALEDQQHIHTRIMAYSAKYASAFYGPFRDAVGSASNLGKSDKMAYQMDPGNID
EALREVAADLQEGADMVMVKPGMPYLDVVRRVKDAFRVPTFAYQVSGEYAMIKAAAANGWLDHDKVMMEALLGFKRAGAD
GVLTYFALEAATLLQQQR
>SEQF1086_CAE43906.1 putative GTP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLLHRASFYISAARLDQLPPAGAPEVCFVGRSNAGKSSAINVLCNQRRLAFSSKTPGRTRLINMFGLPDPLAPGEQLGF
LVDLPGYGYASVAHREKEKWADILGGYLRDRASLAGIVLLIDIRRGVTDLDRRLTNFIAPTGRPVLALLTKADKLPYGQR
MRTVFAVRKDLADIGALHMVPFSSTERIGLEEAGAHIENWISPKVVP
>SEQF1086_CAE43907.1 putative cytochrome C precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRVLSRMLVASGLVLGASVHSMSFAADGAAGPAKPDAAKGAQLYDQGDASRGVIACASCHGAAGSSTIPANPNLAAQPH
EYLVKQLTEFKVKEGEKLPLRMGPGGNPTPMTAMAQPLTAQDMQNVALYLSQQPLKEPATAGHENLVELGQKIWRGGLAD
RNVPACAACHGATGAGIPGQYPRLSGQFSSYIEEQLKLFRSGERGNSVPMHDIADRMSDADIKAVADYAAGLR
>SEQF1086_CAE43908.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNATSTAPSSRHTLRSLAGDVFELLGSMRFAVSLLMFICIASIVGTVLAQNRPSNVYVDQFGPFWFEVFDKFSIWHVYNS
WWFLLIMTFLVVSTSVCLIRNTLKMLREARSFREHVRASSLRAFPHRVQTEVAQPVSETAQGVTGLLGQFGYAVRERRDG
DGIMLAAKKGSANRLGYIFAHSAMVIICIGGLLDSEAPVRLQVLFDGKQPIAINGEMARADIPDSALLSVNNPSYRANLW
VPEGSNASLATIAVNDRSLVQPLPFSLRLKKFTVDYYSTGMPSRFLSLVEVTDPETGEMFDQTIEVNEPLRYKGVTVYQS
SFDDGGSSVSLTGYPLVGAGDTPFKVDGVVGQTSEIGARIGDQPKSMKIEFTALRVINVEDFSGGQPGAQNLSLREHVAS
VAGSAAGKKNENLRNVGPRIDYKLIDDAGQAHEFQNYMLPVVLDGVPVFLSAVRNNPADDFQYLRIPADDQGSLAEFMRL
RAALADPAARQEAARRFAERNAPSGTDRQPLETAAQRALATFAEGGLQAIADFLQANTAPDDLERAAGIVVRLVGASVAE
LRDIARARAGLPALPQSGPQADEAAQWSRVAVAALSDLAFYPAPVMFSLTDFQERQGSVFQVARTPGKNAVYLGCVLLIL
GIFAMFYIRDRRVWVWVKPADGAGSSIEAAMTSQKRTLDFNQEFDRLREALLRQSKP
>SEQF1086_CAE43909.1 putative cytochrome c asssembly protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTTTSNSAAAWTSGFSPTGDGRAQRGRPDWTDIAFFLLLAAGAGFALTRFSGAMDYYEKLILCGTVPALAWLGWLWRPL
RHLMIACALAAGLALLLYQNDLARAEQVFFLKYLLSSQSAILWMSALFVLAMLCYWIGILSPTAAWLGTALTWGAVFAGT
TGLLVRWREGHLMGPDLGHIPVSNLYEVFVLFALITALFYLYYERKYATRALGGFVLLVITSATIFLLWYSFTRDAGQIQ
PLVPALKSWWMKLHVPANFIGYGTFSLAAMVGFAYLVKQYGQTTSWLKLAPLFVLGVALCVEPIVFRTEGLSATWMIYCG
AGVVIVGGILLARARIAQALPSLEVLDDIMYRAIAIGFAFFTVATVLGALWAADAWGAYWQWDPKETWALIVWLNYAAWL
HMRLIKGLRGTMAAYWSLVGLLITGFAFLGVNMFLSGLHSYGKL
>SEQF1086_CAE43910.1 diaminopimelate decarboxylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAVSVQPDLAGSPHFRYQNGVLHAEDVPLDSLAAQLGTPLYVYSRAALRSAWETYRDAIGERPVLVCFGMKTNSNLAVL
KEFARLGAGFDIVSGGELARVLAVGGDPAKVVFSGVGKQAWEMRAALEADVKCFNVESEAELERLSDVAVSMGRRARVSL
RVNPDVDAQTHPYISTGLKENKFGIAIESAPAAYRLAARLPGVEVVGVDCHIGSQLTDISPYFDALEKLLDLIEQLAENG
IAIKHLDLGGGLGIRYTDEIPPSPKALLDRVFERINARGLGHLHIVLEPGRSLAGNAGVLLTTVQYLKHAEARNFAIVDA
AMNDLLRPALYEAYHGVQPVTPRADKRIEYDVVGPVCESADWLARGRALAIQAGDVLAVESAGAYSMVMASNYNTRVRAA
EVMVDGNRHYIVRQRETLESLYQGESTLP
>SEQF1086_CAE43911.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTETEFLALVDQVLDSIESQADDWAAGLDVDIEATRSGNVLTLVFEDGTQVVVNVQAAMQELWVAARSGGFHYRYDGQHW
NDTRGGPRLPDALSQICSEAAGVPVSVRL
>SEQF1086_CAE43912.1 penicillin-binding protein 1A [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSKRQNSTKQDKPAKSGSAILRFFLKAGIFFGGLALCGVLLAGMALALAWPNLPDLHAMTDYRPRVPLRVYTADRVLIGE
FGEERRNVLRFNEIPDVMKSAVLAAEDDRFYQHGGIDWMGVIRAGLTNLISMSKSQGASTITMQVARNFYLSSEKTYSRK
FYELLLTFKIESQLTKDQILELYMNQIYLGHRAYGFAAASRTYFGKPLSQVTPSEAAMLAGIPKAPSRFNPISNRPRAEL
RQRYVLGRMYSLGYLTEPEYKEAMAQPIVIKSAEGTPAGGYAIHGEYVAELARQLLYNVYQDNLYSRGINIYTTVQSKDQ
ESAYRAVRDGVLEYTRRAPYPGPEEQLDMPAGVENDPQALDEFLDGVFDKFSDSGDLLTAVVLSASPTEIKLVRSSREVI
SITDKKALGVVARALTDKAKPEMRLKRGSVVYIHKYNDNWEVINMPAVQAAFVALSPQDGAIRAMVGGFDFYRGNFNRVT
QAWRQPGSNIKPFIYAASLERGLTPATQISDQPFELSAAQTGSKAWHPKNYGNQYEPMLTMRQGLYKSKNMVSIRILQAI
GPQYAQDYLTRFGFDKARQPAVLPLALGAGSVTPLQLAGAYAVFANGGYRITPYLIDRVTDSSGKVLMQSRPVIAGDAAA
RAIDARTAFVMDDMLRGVATSGTAARARATLKRSDVAGKTGTTNESVDAWFSGYTPSLVATAWLGFDQPKSLGSRETGGG
VAMPIWLDYMKDALKGVPEEKQRPRPDGLLVENGELYFSEFPPGQAVARLGLPQAGDALGDFLNGLTGGNDNSIRVAPGV
GTQGSQPWSQNIPF
>SEQF1086_CAE43913.1 shikimate kinase I [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNASANLCAASANDPQPGDQEAAHPVACAGDEPAAFLPHDLPIFLVGMMGAGKTTIGRGLARALRREFIDLDHELEARCG
VRVPVIFEIEGEAGFRRREAAALQECTQRRQIILATGGGAVLAAENRQALRERGIVIYLRASVEELFRRTSRDRNRPLLA
TADPRATLRELMVAREPLYNEVADLVIDTGSMPIATLVKSLLPKLQAYEKK
>SEQF1086_CAE43914.1 3-dehydroquinate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDVVEVATPGGSYPIHIGPGRLDALDASIPADATAIAVVTNPTVAGLYGARVEAALARTGKRVLRIELPDGEAHKDWQTL
NLIFDALLENRLDRRAVLVALGGGVIGDMTGFAAAVYMRGIRFVQVPTTLLAQVDSSVGGKTAVNHPLGKNMIGAFYQPV
AVEIDTEVLGTLPAREVSAGLAEVIKYGLILDAGFWQWCEDNVGALRALEPRALAYAIRRSCELKAQVVGQDERESGLRA
ILNLGHTFGHAIESGLGYGEWLHGEAVGCGMVQAAELSTLAAGFPAADVQRVRDLVREIGCPTVAPDLGAERWLALMQVD
KKTEGGEIRFVLMPRIGQALSRAAPEADVRTALERTTR
>SEQF1086_CAE43915.1 putative phosphohydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNKDGTVVLMNELASYASDPSKTRGRRHSEPPPENRTEFQRDRDRIIHSNAFRRLEYKTQVFVNHEGDLFRTRLTHSLEV
AQIARTLARSLRVSEDLTEAIALAHDLGHTPFGHAGQDELNACMRELAPQAGGFEHNLQSLRVVDELEERYAEFNGLNLC
FETREGILKHCSATHARQLGAVGERFLDRTQPSLEAQLANLADEVAYNNHDVDDGLRSGLITLEQLQEVGIFARHYAEVA
RRYPQLAPRRATSETIRRMINTLIVDLTATSLARIRDHAPASADDVRRAPPLAGFSAAVRREADELKKFLFDNLYRHYRV
VRMTTKAQRIVRELFQAFLGDPRLLPPDYRREQPQDQARAISDYIAGMTDRYAIREHRRLFEMG
>SEQF1086_CAE43916.1 putative glutathione S-transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYTLLIANKNYSSWSLRAWLALRQAGIPFEEQKLGLLTEAFTQRLQAITPAGLVPVLLDGDFAVWDSLAICEYVAERHPD
AQLWPADRRARARARSLAAQMHSGFGALRQTMPMNIEARLPGIDLSAAQADISRVQAIWHDTRAEFGQSGPFLFGRFSIA
DAFYAPVVSRFQTYGVAAAGAVRDYMEAVQALPAMQAWTRDALAEATFVADDEPYRTHR
>SEQF1086_CAE43917.1 excinuclease ABC subunit A [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDAIRIRGARTHNLKNVSLDLPRHQLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMDKPDVDLIEGLS
PAISIEQKSAGHNPRSTVGTITEIHDYLRLLYARVGTPYCPDHGLPLQAQSVGQMVDAVLAWPAEARLAVLAPIARARKG
SFEDELASLQAQGFVRLRVDGQLQEIEQLPALKKTEKHDLDVVIDRLRIRPESQQRLAESFETALQLAEGRAIALDMDSG
REQVFSSRYACPICSHSLAELEPRLFSFNNPMGACPGCDGIGQVGFFDPKRVVAFPELSLAAGAIRGWDRRNSFTHSLLT
SLATHYEFDIDTPFEELPAEVREKVLHGSGEEEIAFFYVNEKGRSTVKRHPFEGVIPNLERRWRETDSATVREELGKYRN
IKTCPDCGGSRLRPEARNVLIGSEPREGERHGQAIFEVESMPLSVCLDWFRQLQLTGAKQEIAQRIVREIEARLSFLNNV
GLNYLSLDRSADTISGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLQHLRDLGNSVIVVEHDEDMIRC
ADWVVDMGPGAGEHGGQVVAQGTPEAVQTDPQSLTGQYLSGARAIEIPARRPVADDQPWLHLSGATGNNLKSVDLRIPAA
RLVCVTGVSGSGKSTLVNDTLAVALARQLNHAQGEPAPYAGLAGLEHFDKTISVDQSPIGRTPRSNPATYTGLFTPIREL
FAGVPEARARGYDPGRFSFNVKGGRCEACQGDGVVKVEMHFLPDMYVPCDVCHGKRYNRETLEIRYRGRNISEVLDLTVE
QALEYFESVPAIARKLHTLIDVGLSYIRLGQSATTLSGGEAQRVKLSLELSRRSTGRTLYILDEPTTGLHFHDIELLLKV
LNQLVDSGNTVLIIEHNLDVIKTADWLVDMGPEGGDGGGRVVAQGTPEQVAASPDSHTGHYLGRVLRNGKRR
>SEQF1086_CAE43918.1 putative transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPADQKLQLTRSERRASVALAGLFACRMLGLFLLLPVFAVAARDLPGGNDPARVGLALGMYGLTQAFMQIPFGLASDRWG
RRPVVVAGLVLFIIGSVVCALADDVYWITLGRAIQGAGAISAAVTAWLADATRDEVRTRAMAMVGGSIGLSFAVSLVAAP
VLVGWWGLSGLFWTIACLGLASLTVARWMVPVVPRTEARTMQGASARAVLLHADLLRLNFGVFVLHLIQVALFLVTPSLL
ARLGGLDARDLWRVYLPVILVSFVLMVPAVFVAEKRRAHRAALRAAVAGLIVVCALLPLAAHGFYALALALTGFFVAFNI
LEALQPSLVSRVAPAQYKGLALGFYNTAQAAGLFAGGALGGWLAASGGADAVYIAAAALAALWLAVTWALRPLR
>SEQF1086_CAE43919.1 single-strand binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MASVNKVILVGNLGRDPEVRYSPDGAAICNVSIATTSQWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGRDSGGDSGGGYGGGYDDAPRQQRAPAQRPAAAPQRPAPQAAPAANLADM
DDDIPF
>SEQF1086_CAE43920.1 ferric siderophore receptor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPRPTSRRTRPARRQAQPAFVPALFMLALGAVAAGARAQPAAAGVPDTQGVAQMPAVTVNAAPVDDTLEHLEAPVDTGAL
GRRTQLETPFSTTVVTARDMEERQVNKLGDVFALDASVTDNSASYGAWASYLTVRGLPLDWQNSYRIDGRPFLSYVTTLP
FEHFEQIDLLKGASGFMYGFGSPGGLVNYVTKKPTDEAVRSVELGYVSKGLLREHVDLGGRVGQSGAFGYRLNATHEEGN
TYNGGSLYRDSVSLALDARLSDRLTWDFQSIYQDRKAIGQEPTIYAGTMAGSELPSPVRNDNDRLVGQGPYADNAFRYYS
TGLKYQLADEWTLSTNYSYSSTRTRRNESVLFLRDQAGDYDDYRSDYGEAYGYNQWQAMLEGKFATGPLKHHVVAGASWQ
KQKNDYSANGVYQLQGTGNLRARNTNTYYSEGQLHLYRAAEITQKALFASDTVDLTGGWSVLGGLRYTNYAQQGFDATGA
RTSRYDKNGVLTPTFALMYKLTPRTMAYASYIESLEPGSSVGAAYANFGALLDPLKSKQYELGIKTEQDGWAATAALFRI
EKKAEYANAANELVQDGKTLYQGLELGASTRIARDWNVGGSLMLLDSEYKKGSDFTGNRVAGAPKFVAAAQLAYSVPQVP
GLKLRADVKYTGNTMLGASNRVQVDDYAIVNIGATYDTQIHGYEATFTAGINNVANKRYWLYQSSDYVKAGDPRTYGLTS
ISRYPDIWI
>SEQF1086_CAE43921.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEENTMGHGIAGGTGLAARNEAPELIRALDRDDERCWVPLAPGAWFYPMAFDVRNGVWHSVFRVAPGAQLPTHYHLGRVV
GCTLRGRWHYRERDWEHRPGSYLLEVPGDSHTFEVIGEETVELFTVNEGGFLLLDERGDVTGITDVLLRLEQARAHYERV
GLGRAAIDSLIR
>SEQF1086_CAE43923.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTLASMVRWPRIAGAVVRQACAAALGLALGAAPALADYPSRPVTLVVPSPPGGSTDAIARVLADALGKRLGQSIVIENK
GGGGGIVGSSYVLDKPADGHTLLLAISSKTVARALQPALAYDPIRDFTAVALVSRVPTVMVTSVAAGLPDFARLKAYIAA
NPGKTAWAVPGIGTAPHLTEHVLMQALGGKVNEIQYRGSAPMHVDLLAGRVDVVVDSYTALRQHIDDRKVVPVAVIGRGR
IEAMSAVPTLGELGYRTFEEVLFDGWNAIDVRASTPPEVVARLSQALQDVLADRAFRERVVQLGLVPFAPMPASQAQDFV
QDVSRVLSPVAASLAAAQ
>SEQF1086_CAE43924.1 GntR family regulatory proteins [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSASVDVLSLPEVEAAASADTPNLLYWTIYQGLVRSIEADTAAVGKDLPIERLISAHYSASRFTVRQALDLLEKRGYIRK
QRAKPARVISRSPVVPVERHLRRLSDILSPAVIHQTRVTGFGPARHDEAAATLGQAPGAQLYRLQLVHADQAQNIGFSDI
YFPAHIGQRLSLQDFDAAARNGPLFVYPIVEQKIGFKVDHARINIGAESHARAQRTAVAEALGTAPLVRVQYVFSHAGEP
VQFTTNWLDSRFFSVSYELAEGEF
>SEQF1086_CAE43925.1 transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIAKHLDLNLLMIFDAILAEGHVTRAAERLAMSQSAVSKGLAQLRQAFGDPLFLRASRGVVPTHRALEIADQVRQAIAAL
NSLAGPVTEFDARSAHAHFNIGATDYVSFVLLPGLMRRLQETAPHVSLTLHDMESMMPEEMLLAGKVDLVISSVASVNFP
IYRQELFRDHYVCLCRAGHPALADPVPIEQFVSSRHLAMPRQNGARERVLQDTLQRLGVTRDVAVQVPHMLAIPATLTAT
DLVATMACRVAREFAARHPLQVLAHPLPLPDFPVSQL
>SEQF1086_CAE43926.1 putative chlorohydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLTQIKGEWVLGFADGNHRMLCDASVVYEGERIVHVGTEFDGVADRVIDARGCLVAPGFIDTHVHSGHRALHKLLADGGR
PDLFGQPYMDVTIARDGTRIKGYPNYLSREEAAVDPGIALHAAFTVAELLRNGVTTFVELGGHVMVQEALWRECERLGVR
GYLGPGYDSGRWAADDQGRLRRVPYPDGGDHLFEEAVAFIKRVQAAGNDLVNGILVPREVENCSVDILRRTVQAAQELGV
PMATHAGYNVIEFYETVREHRMTPIELLHSVGMLGPRLNIGHANLISDSPRLNYSGGRDLALMGEHRVSISHCPINIVRR
ARVLDSWKKYREAGVNLTIGSDTYPRDMVMNMRTASYHGKVMSHDLNAASAAEVFEAATLGGARSLGRTDIGRLEPGARA
DVIAINVGRQDVLRYGPIWDPIRSLVECGVGDDVELVVTNGQVRMEQGRIAGVDLGALRAEAQQFADNVWRDLQDWDPLR
RTAQAMCPPSFCPDCM
>SEQF1086_CAE43927.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKKLMQWGAALALAVTCGAAQAGDAVAAYPQRPVRLIVPYGAGGAADVLARIMAEKLSAIWKQPVIVENKPGGVGTIGIM
ATVQAEPDGYTLVSVPVSDLAVNPHLYRKRPFDVRKDLAPVSQVGAVPNVLLVSNALEVGDVQALVARAAAKPGYLTYSS
PGVGSQAHIAAEMFAMRAGLSLQHIPYNSVPAALTDVAGGQIDMMFAQLPAVLPFVKSGRVKVLAVAADARTPLLPDLPT
LGEVGGPSIGDAISWSAVMAPAGTPLALREKIAAGIASAIQSPQVREKLAAQGLIGLGGTPQQLEQAWRQDYERYGAAVK
AMHIQLLD
>SEQF1086_CAE43928.1 putative glycosyl transferases [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQPHPLRIAHAEAAIGFGGQEQRILKEALAMRERGHHVELICRPQARLIERALDAGIRVHTVPMGGLRNFVRGVPRVRR
ILREGGFDVLNTHSRIDTLLAGAGARLAGTPLVVRTRHLSNRVNSMLSYTWIPHRVSTVSDHVRRYLIERGVSPAHIETI
YSPINLPPPGLRSTLRDELGLPADAVVVACVAIMRATKGHRELIEALRPLMASRPQVHLVLVGNGSPLFEQLQALIAELG
LGERIHMLGFRDDVPNVLAGSDIFALPTRKEASGTVFVEAAACGLPVVGVDVGGVSEMLRNGETGLLVPPDDAAALQGAL
RSLIDDASLRARMGGAGERMVRDEGKFSLARLAERTELVYRKWLAERRDAPTAASRSARQS
>SEQF1086_CAE43929.1 hypothetical protein BP3672 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSIPTSRLAAVQAPPQDIAPQTLRDRMPAVLPVMDVVPAAMDWPPFAVVDLLGATLLATGSERDVYQHPGNAALLIKIVN
RARINEPGRRRPWHKKFHREDAHRVFITELIEYISTTVQLRQADGNTLLARIAGLALTSAGLGLVVEKIVDAEGKAAPTL
AQVVSTQGFGPQLREQLRAFFLALIEAHVIFNDVSARNIVVGRNATGQDGLFLVDGFGPKQLLPLYAWSKTLNRRRLLRK
YEDMVRKLARLGDRLARQAGQPLPGDGARPPR
>SEQF1086_CAE43930.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGALKNDSSLDVRMLRIFAAVAAADSLSAAAQALNITQSAVSQTVTQIESILGMRVLDRTRRPYRLTPAGVALQRQSRQI
VDDIDRLIAQVREADLMNRPAIRIGMIDSFAATTGPAIVKRLTQSASQVLVWSGLAYGHAQALLNRQVDIIVTTDALEDV
DGLVRRPILNEPFVVVAPAVRADEFAPLDLRQMAQAAPFIRFSGRSHFGAMIERHLRRCGVTAPPFLEIDTSDVVMAMIA
ANLGWALMTPLCLLQGRSWLDQVVVLPLPGPSLARTLHQVSRLEEYQEMADMFWQLSRQALETEIFPQVTTQLPWLGRQM
RLC
>SEQF1086_CAE43931.1 periplasmic solute-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAIGAAALALPVAGRSWAAQAEAVRYGGSAWLGHYPAWLAIQAGYFKAENLEVGWESFGTTSARVSALLSGNIDMAVTAA
PAALAVMSRGSRHFAIIGVPENFGRVEGLIVRSQVARLEDLKGKKVGVTFASSAHLLVLNLLDQAGLKAGKDVTVLNVPA
PELPAAFQSGQIDAAAAWTPQFNAIRAMPDAKVLVDDTSFSLYKEYGVTPGPDVLVARRAFLDKNPEAVKRFLKAYFRAN
EQLKTQPDATVAALTELTKLSAADQLEMVKGADWYTAAEQGALLAPGSKYIDGLQKLAEMMVRYDQIDKAPPVREWVDAA
YL
>SEQF1086_CAE43932.1 ABC transport system permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAQNRQRRPDLLLISSVSVIVLLLFWEAVCRLQWVDALFLPPPSDVFARIGNMWEQGSLLDHIVASARRVMVGFAAATA
LAIPLGIFLGTSQRARAAFDPILSFLRPLPSMSWIPLSLLWFGITETQKYSIVFMGTFAPALLYVIEATRNIDPLLIRAA
SNLGASGPQVMRSVILPASLPQIFSGFKVILGLSWTCVISAELVAAKEGLGFLIMNGKEFFQTDTVVLGMALISVTVLVT
DVVFRIIENRVLAWSR
>SEQF1086_CAE43933.1 ABC transporter ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MISIEGISKSFGPFQALQGVDLKIPRGEFLVVLGASGCGKSTLLNLITGFERPTAGRIVVNGREVVDVDPHCGMVFQQYA
LFPWLTVAENVAFGLKMKGVAAASRRETAQQFIEMVGLKGFENAYPKALSGGMRQRVSIARVLANDPDVILLDEPFAALD
AMTRQVLQEELTRIYEQSGKTIVFITHSIDEALLLSSRMVIMSARPGRVACDMPNDLPYPRNADVQLSPRYIELKSQIWD
IVQNEVMRSLQARADQ
>SEQF1086_CAE43934.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSPSGSSRTFPQYQSGSGWNAMLPKRTPRTAAPARRHFKSLVIGAGYTGLAAARRLAELQPQDQVLVVDATVAGEGSAG
RNSGFLINLPHNTRMSGHHSPLEVARKQIAMLQSGLDWLAQLSGQGGFDCGWDLAGKYHAAATADGEQSLRGALQQYGQW
GVAYSELDRDALQAQLGTRYYRFGYHSMNNVFVQPAALIRGLADSLPENVWLTEDNPVLSIDGSGPYKVRTRGGEFTADN
VILANNAFARRLGFLRSRLVTIFTYAGVTPVLSPAQQALLGERDQWGVIPANRLGTTLRRISGGRFMVRSAYSYEAEQPL
ERMEQLLRDSFVRRYPDLAAHDFEYVWSGSTGLTGNGASFVGAIQPGLYASVGCNGAGVIKGTIYGKLLGEQVAGHRSAM
LDDLASFEKPNWLPPEPLRRIGALSTIAYQARKAGLEK
>SEQF1086_CAE43935.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRKEEIMKMIAIGAGVMLLAGLVRACQGWRRLLRQLPDRNEDMTLF
>SEQF1086_CAE43936.1 TetR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPGCHFSHDRAKLPGMSIPKSELTFAAIVDAALDMAAAQGMESLTLGEVAKRLGISKSGVFSRVGSREALLHAVLQEYDR
RFLGAVFAPAMAAPRGLPRLDAMVGHWIERAANVEALTGCIYVAGAFEYDDVDNPMRGRVEANVRGWRAALGRTVRQAID
EGHLRPDTDPEQLVFEIYSLMVGLMHDARFLRDPRAHERVRQAYARLIATYRNT
>SEQF1086_CAE43937.1 malate synthase G [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTERIPHHGLQVAASLHRFIEDEALSGSGLAPDEFWAGFAALVRDLAPRNRELLAERDRLQGEIDAWHRAHPGPVRDSAG
YQALLERIGYLQPQPAQVTASTRDVDSEIASQAGPQLVVPVSNARYALNAANARWGSLYDALYGTDAIPPVAGDDGKGYN
PARGEAVIARARAFLDEAAPLAQGSHADATAYAIEGGKLVVTLGAGQRTGLRNPAQLAGYQGDASQPAAVLLANNGLHFE
IQIDRQHQIGATDAAGVKDVLLEAALTTIMDCEDSVAAVDADDKVLIYRNWLGLMKGDLSESVTKGGKTFTRRLNADRQY
HKPDGGTLTLHGRSLMFVRNVGHLMTNPAILDEQGSEVPEGILDAVITSLAALPDRANRLNSRTGSIYIVKPKMHGPAEA
AFANELFDRVEDLLKLPRHTIKMGIMDEERRTSVNLKACIAAAAARVAFINTGFLDRTGDEMHTGMEAGPMLRKGDMKSS
AWITAYERNNVLVGLDCGLRGRAQIGKGMWAMPDMMAAMLEQKIGHPKAGANTAWVPSPTAATLHAMHYHQVDVAAVQQA
LEQTRYDSVRDELLAGLLTVPVGDPAAWSADDIQRELDNNAQGILGYVVRWIDQGVGCSKVPDINNVGLMEDRATLRISS
QHIANWLRHGIVDRAQVNATFERMAKVVDQQNAGDPNYLPMAGHFDTSFAYRAACALVFEGLTQPNGYTEPLLHEYRQAF
KAARR
>SEQF1086_CAE43939.1 putative dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVRPPYPIAILGAGKIGAAIALLLQRGGDYDILVADQDPARLQAVARLGCRTAQVRDDDALQQAVSGRYAVLNALPFHRA
RAAAAACVRAGAHYFDLTEDVASTHAIRELAASAGTVLMPQCGLAPGFIGVVGSDLSRRFDRLLDLRMRVGALPRFPSNA
LRYNLTWSTEGLINEYCNACEAIVDGALVAVPPMEGYETFTLDGIEYEAFNTSGGLGTLPQTLLGKARNVDYKSIRYPGH
CAIMKLLLNDLRLRERRDLLQEILESAIPSTDQDVIVILASASGYRQQRLVQESFSARIYGATVDGQTLSAIQLSTAAGI
CTMLDLAVHGHLPQRGFIGQEQVPLAALLDNRYGRIYAGQPLPAREAPQALLPGS
>SEQF1086_CAE43940.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTLATAVILSMTMAAGAQAADLGAEPTRAQVQADLAQAKNDGVVTFGNLDYPPQHG
>SEQF1086_CAE43941.1 UbiA prenyltransferase family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSASQQQSVDLNDIVFTDWVERWLPRPWRPYARLCRLDRPIGTWLTLLPCIAALVQAAGGLPDLRRLLIFSLGALLMRGI
GCTVNDMWDRDIDKHVERTRFRPLTSGQLSMRQAVAFLIGQLLVCASLLFFINDMSRWLAVAVLPFVFIYPFCKRVTYWP
QVVLGICFNWGMLMAWSDTQDHLPLAAIAMWLGAVLWQVGYDSIYAYVDVRDDRSLGLHSTAMRFGEQGMLWIGGFYAAT
LALWTWGGYAMGLGWGYFAGIGAVAIHLAWQLREFDLQRPERNFKLFRANLWTGVLLIAAALAGTLPY
>SEQF1086_CAE43942.1 putative aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDKPFEPECSFSERAKQLTSSAIREILKVTERPEVISFAGGLPAPGGFPVEVVQAAFDKVLVTNDRAALQYGPTEGYAPL
RQWVADDLNAAGANVTADQILIVSGSQQALDLLGKVLIDKDSPILVEDPSYLGALQSFSLYQPKYVPIPTDDGGLVPEAI
TAELAEGARFLYALPNFQNPTGRTLNLERRKALVRQAAQFGVPIIEDDPYGELRYAGEPQPGLLALAGECGATVIRLGTF
SKVLAPGLRLGYIAAPRNIINKLVQAKQATDLHTPTLTQMAVYEVVKTGFLAEHLPRVREIYRVQGRCMLEAIEREFPAS
VSWTKPEGGMFIWVTLPEHIDSTKLLAQAVEQNVAFVPGGPFYAGTPRQNTLRLSFATVPEAKIREGIAILGKLLKAAI
>SEQF1086_CAE43943.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFDATPISTVSKPVFYAELAAQARALLAGEHDRIANAANFSALVYQALPDINWAGFYFHDGQELVLGPFQGKPACVRIAL
SRGVCGAAASQRRTQVVPDVHAFPGHIACDAASRAEIVVPLVHKGSLLGVWDVDSPLPGRFDDEDRAGMEALCEVFLHSL
GSAD
>SEQF1086_CAE43944.1 putative dihydrodipicolinate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPMQYPAQSPFQGIWIPLVTPFADGAVDLPALRRLVRDYKAAGVDGLVACGSTGEAAALDEAEQLAVLDAVLEEAGALPV
AMGLAGNHQDHVLRRLARLGERPLAGVLAPAPLILYDIPYRTGAQLDTATLLALAEHPNIAAVKDCGGSVDKTLALIAHG
GMAVLAGEDLQGLGTLCLGGTGMIAAAAHVRPDLFVAMHRAVRAQQLGQAQRLFLALAPVIRLLFAEPNPAPLKALLASQ
GRLRNEMRAPMLPAAEALTRRLQAELDVLDRAFAPGA
>SEQF1086_CAE43946.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLQDVTSCCITHAAAAPIIVFAINAFFNAQGRKMGLLNFIKEVGEKLFGASEAKAATADELKKELDKHGLSAEGLDISV
DGDKVTVKGSAASTEAAEKIVLALGNTVGVAQVDNQLQTAQAAPAAVMYTVQKGDTLWKIAEANYGKGKGAKYPTIFEAN
KPMLSDPDKIYPGQVLRIPPLAE
>SEQF1086_CAE43947.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHITLNGEAREFPLQTTVVELLETLGYQGKRVAVERNGEIVPKSKHGDTLLDDGDQIEIVVAVGGG
>SEQF1086_CAE43948.1 prolyl iminopeptidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLYPPIEPYRQGTLDTGDGHQVYWELCGNPQGKPAVFLHGGPGSGCSPVHRQLFDPRRYNVLLFDQRGCGRSLPHASLEN
NTTWHLVADIEHLRAEVMGAERWLVFGGSWGSTLALAYAQAHPQHVSELVVRGIFGLRRAEVQWFYQEGASWLFPDRWEE
YVAPIPPEERGDLIAAYHRRLTGDDPAEQLRAAKAWSRWEDHTITLLPSPRYQQSHAVDRAALAFARIENHYFVHAGFME
EGQLIRDAHKLHGIPGTIVQGRYDVCTPARIAWDLHRAWPQAQFHLIPDAGHAFDEPGILARLIQATDTYAANPA
>SEQF1086_CAE43949.1 putative methyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTNTPAHPPEGAPLSEATQAALASAEHAPDSPGATHIRSFVHRRGHITQRQRDALEQLMGKWSVPYAPRPLDMAAAFGR
QAPTILEIGFGMGETTEKIALARPGDNFLGVEVFNAGVGSLLHRIEESAISNLRIVQHDAVEVVRDMIAPDSLAGVHVYF
PDPWPKKRHHKRRLLQPPFVALLASRLAPGGYLHCATDWEDYAVQMLEVLGGEPLLRNTADGYAPRPDFRPQTKFETRGL
RLGHGVWDLMFKRA
>SEQF1086_CAE43950.1 LysR family regulatoy protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNPARFDLVTLALFVAVARQGSISAGARQSHLAVGAASKRISDLESALGTPLLYRTAAGVELTDAGQACLAHAVRVLQEV
EHMAGVLSDFAQGVRGQVRIAANTSSITQFLPEDLAGFMQRHPAVRIHLEEQNSSDIVTAVAENRADVGIFADRTPAAGL
TTVPYRLDELVLITPPRHPLAARAQVAFADTLDCDYVGLPPATSLATRLADESARLDKRIRLRIQVRSFDAICRMVVATG
GVGILPRIAAEPHARSMQVRLIPLADDWAQRWLLLGVRDLDSLPVAARLLVRSLAEGAA
>SEQF1086_CAE43952.1 putative hydroxymethylglutaryl-CoA lyase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKGPPRIEINEVGPRDGLQIERALVATDDKVAFVDALSACGFARIEVTSFTSPKAIPALADAQDVMRRIARRPGVVYTAL
IPNIRGLERALEAGTDEMNLVMSCSETHNRANLRMTRDQSFDELAAILRRAGEAGVPCNVSLSTAFGCPFDGDVPAGDVM
RLARRLADAGAQGITLCDTTGMAYPTQVAQLCETFQRALPGAALTVHLHNTRGMALVNAVAAWQTGVTRFDAAAGGLGGC
PYAPGASGNVNTEEIVHMFACMGVATGVALAPLLDIVHGLPGLVQRALTNPLLAAGPRLATHQPPAWLAERFPAA
>SEQF1086_CAE43953.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHLAKLRLLRGAALAAALAATLAAGASGGIAGQMVARAQPDGYTLLLQYSGFQAITPHVSSNLGWDPIKDFAPVANVLSA
PQVVVVRPDLPIKTLKDLVDYAKANPGKLNYASSGNGSLQQVATELLNQMAGIQITHIPYKGTGPALNDLLGGAVDLTIT
TPPPLLGHIAAGKLRALAVTGDKRLPSLPDVPTAAEAGYPDLIVSSWFAMYAPAGTPPAIVEKLSGEIRKIMATEAFRQK
AAEQGAEARYMDPKQLGAYTQEELDRWGKVVKAAHISAN
>SEQF1086_CAE43955.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43956.1 GntR family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLMNTSLRRSTPAGGQIVVNAERPAVFDQLHRPNYSGIPKYRLVLNAIAEGIESGHWKPGERLPTEDDLVQMTSYSLGTV
QRALRILVDQGLVVREHGLGTFVAQQLLRIQDPWHCRFLADDGVGFLPVYSTIISRDYASGEGEWQRYFDTAAGAQVILI
ERTINVGNEFEVFTRFYVDRNVFPSLWDTPMEKLNGLNFKKQITQELNVPVTKIDHFVAMEPFDPTVAGYTKTPPYAAGI
ALQVVACMGQERCIYYQKFFIPPTKRVLSIPDQLTD
>SEQF1086_CAE43957.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRSISLHLRRALAVLGLAGIAAAAPLHAAETWPDRPVRLIVPYPAGGGVDFAARLIASDLSKQTGQNFIVENRTGAAGTI
GAQAVVQSTADGNTVLFASPAEVLVSRIAGQKTSYDAGKDLQPVTLAGETPLAVVVNPAVPARTLAELVALARKDPSAIS
YGTPGTGSTMQFAGEALNLAAGIKMLHVPYRGAAPAIADLLGNQIPVAIVGVPPLVAHHKSGKLRILAVTGSQRIAALPD
VPTVAEELGVADYRYTNWFGVYVPGNTPAAVGDRLAALIHASVHRDAIKAQLAEQGVEPIGNTTPEFVRFLADEKARYET
VQRKSGIQMD
>SEQF1086_CAE43958.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTSKQGRHTAFLTKAAATAVLAAGSAASLAADPPKPLKINYGAPTADYYTLYVAKDHGLFEKHGLEPNFFWFASGAPLLA
GLKSESLDVFITGLASAFALGQNLPVKLLFWQLDDAPGQGLVVSKDSGIDSYRDLKKAKAIGTPSGTCAQVALGLMARKA
GIAMKELNVVNIAPPLYANAFTSNSIDAGVTWAPYLQSVAERGYKIVNYDTDYDGICPVMTGARTKFLQEHPDVGLKLVQ
ISAEAQRMVADNPQLAIDVLEKYLKVSPAVAKATYERLCCGNFPTFRQQADPESPYSLVSDKGIVAKLHTATQILAEAGT
IPQAISRETVAASIDASYVRQYLATQPGQ
>SEQF1086_CAE43959.1 GntR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDTDAIRSEIFGQLARPDNSGIPKYRRLSNILVEAIRRGVWQPGDRLPAEEQLTEMTPFSLGTVQRALRALTDEGLVIRM
QGHGNFVADQQRQMADPWHCRFLDDESDGIVPIYSKAVQRAVVTPSETGPWQRYLHSGSVMRLDRIINVNDEFRIFSRFY
ADRELLQPLWHVPLEELDGANFKDIIMRQVGLPITEIDRSVRIRRIDAQAARLIGVAPEATVLFMQAVARAGRDACIYYQ
EFYIPETGRALQLPEQRPRVHGR
>SEQF1086_CAE43960.1 putative transport system permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSERVAVEGRQPAISPTVFSVASVVGLLAIWTLVTNLGLVGPGYLPSPQAMFAQLVTLVEQGYGGKPLWDHVGASLFCAL
VGFAIGVLAGVPFGLFSGYHKAVGAMMSPIMAFIRPIPPIAFIPMAVLYFGLGEMGKVVLIVFTAFNYSFVSAQAGALSV
PMSYYRAAESIGMTRLQIFWRVVFPSSIPHIFTGLKVAMALSWAVVVAAELVGAQKGLGFMISDAAQLFQIPVVFIGIAL
IGLIGLVLNVMLTVAEEKIVHWKGR
>SEQF1086_CAE43961.1 putative transport system periplasmic protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQSCLRLAASLLSAALLCLPAPGAAQTASPAKKELLKFNWGAPTADYYALYVAKDQKLFEEVGLEPNFYFFPSGAPLLAG
LKSKSLDVITTGLATVFALGQNVPLKLIYWELDHAAAEGLVVDPAAGIKSYKDIAKAKAIGAPSGTCAQVSLVLMAKELN
LKYSNLNIINIAPPLYGNAFKSKSIQAAVAWSPYSSILNADQLPVVNWASDYTPDQGVCPGLTGVRTEFMQQHPDIGLKL
VQVQAKAMDMIRKDPELGIGVLMKYLSVSREVAKHIYDREFSRIPTYAQQIDPASPYSLAAKDAGLARKLLIASQALAEV
GTIPAPLTPQAIAEAIDPSAIQRYMKGERK
>SEQF1086_CAE43962.1 ABC transporter ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHGTRQVRRSAQARPGASQDNQVKISFQGVSKTYGGRGRSGNRTLALDRMDVDIKAAEIVTVLGPTGCGKSSTLNLIAGF
EQTSTGSLLIDGKPIDGPGPDRAVVFQQPSLFPWLTVMENITLGVKCRGVPKDTYEPRAQMLLREVGLSGFEKHYPYQLS
GGMQQRVQIARALISEPKVLLLDEPFGALDYQTRILMQELLLQLWQEHKPTIFFITHDVSEAIFVADRVLVMSHRPGRIK
LAVNVDADKPRNADFLSTPEFISLQRDLLHAVQEEVHANKNRPPMAKAA
>SEQF1086_CAE43963.1 putative enoyl-CoA hydratase/isomerase family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARADDIEVRVADQVAWVTINRPQRMNALARATFAQLVEVSLELDQDPGVKVVVYTGAGERAFSAGVDLKELDAAGRMTH
PMGGLARNLNEVVLEMATPTIAAINGVAAGGGCELALACDIRVAASTARIGLPEARVGMGANFGSVVLPQLIPRGVALEL
LYTGELIDMALAHRLGLVNHVFEPAELMAQTAGLARRIADNAPLSVQRMKAMAFKSIGLPTAAALRLSVGPDPYNSEDRL
EGARAFVEKRKPRFQGR
>SEQF1086_CAE43964.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFKRIALMGAAAMLAAAPAVHAQDKYPSRPITLVSPYQAGGTTETFARLIIDDVAAILGQPIVVEQKPGAAGTIGARFVA
TSKGDGYTLLANTSQHVMYEGMFKNLPFRPMEGFRPVGVLGSAPIIVVTGENSPYKTFKDVLEAARTRNLTFASGAQGSL
PHLTGERVAVQGKLNMTHVPFSGTAPALTNVMGGHVDLLYSTAASVMSQIRADKLRALAVSTKERMPELPDVPSIAEMGM
PGFDVTAWYAVWAPRDTRPEVVDAINQAMREASARPKAKKRMAALSVTPSTLTAAQFAAFAESERKTWLDVMRRANMQPA
N
>SEQF1086_CAE43965.1 putative zinc-binding dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKAVVCREYGGPDVAAYEEVPAPALAPGAVRIQVQACSASFASLLVMEGKHQNRAPLPLIPGTEVAGVVTELGAGATRFR
VGDRVIAGVQSGCYAQEVVAPEATVFELPADVPFETGAQFPTIYGTAYGALQWRAQVEPGEVVLVHGAAGGSGLAAVEVA
KALGATVISTVGSDAKQAIVREHGADHAINYRTQDWRAEVLRLTGQRGADVIYDPVGGETFDASLRCIAPDGRIIPMGFA
SGAIPTVPANIVLVKNISILGVYWGYYFGWGRHPVRPGNDARLRAAYARLFEWTRQGRIRPRAHAVVPLADFRTALRMIA
SREAIGRIVMQPQQ
>SEQF1086_CAE43966.1 putative racemase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDGPLSGVRVLDMTAALSGPVATQILGDMGAEVIKIEPPEGDSIRDLGPARHRGMGAMFLHTNRSKRSIMLDLNLEGGRD
AFRRLAGAADVFVCNTRPKAMARLGLAYADIAALNPALVYLNIVGYGSAGTHADKPAYDDLIQAAAGIASLRADGDPARY
APIALADRVTGILAANAVLGALYHRARTGAGQHIEVPMFESIASLVLADHMAGLSFEPPIGPPVFDRYASIRRPFQTRDG
FLCMMVLTDRQWREFFRAVGRPEVMDDDRFGTMAQRTRNLEALYAIVSAIMATRDTDAWVAHLEAADIPVARIESVASLT
AHPHLAQAGFFQTVEHPTEGPIRSMACASTWSATQPAPTRPAPRLGEHNLEILREAGFSEEQTQAMFASGAARGYES
>SEQF1086_CAE43967.1 TetR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHPVRTTLPADAVLLTPELENWVGIDYDDMPAVQRKLLDAAAKAFTTYGFAATSIDVIASQIGATKGSVYYHYRSKTDLF
FAVHKCAMVMNLKAQVPVAFDASLDPRAKLYRMAYLHAMLMMDSLYYQRVTVQGVELHQSVSTTPMEREALAEVIAMRDV
YEGLFSQVVRDGMASGHFAEADHSIAAKGILGILNWITVWYRPRETESPGFRQRVATQLATQATQAIQGIARADTRG
>SEQF1086_CAE43968.1 NADH pyrophosphatase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIFIFRGDELLVRESGVDLPDGDTCAQVGVRFELMQQIWLTHDPQLRTTHVARDTVAPPGYAFRKLRALLSELGERAPLA
GRAFQIAEWVRTHRYCGVCATPMQHARHELCLQCPACGLHAYPRVSPAMMVLIKRGEHILLARHARYATARYTALAGFVE
VGESIEDAVHREVEEEVGLRVRDLRYFGSQSWPFPHSLMIAFTAEYAGGDLRVQEDEITEARWFGPGEPLPDIPMRESIA
GRLVRANLPPGMASD
>SEQF1086_CAE43969.1 putative oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLVVRAVTPLTAEIRHFELAAPDGAALPAYTPGAHLSVHVVLPDGTPARREYSLLGDGSATASYEIAVQCREPAAGSAW
MHRLAPGDRIEAEAPVNAFALAADAAEHVLIAGGIGITPILSMARHLRGAGAAFTLHYAGRARAAMAFAEEAAAMGAACR
LYHDDGAPLHEALPNILAAPAPGRHLYVCGPRALIADTVDGAAAAGWPPASVHYELFQGALALRGDQPFDLVLRQSGITV
SVPAGQIMLDALLQAGVEPLYDCRRGECGMCLTPVLEGKPDHRDHYLSPREREAGDAVCVCVSRACGASLTLDL
>SEQF1086_CAE43970.1 putative amidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTSLHRAPPLSAHTTRAAVLDGHASAELLEPCLAAIRAHEPVVRAWRELDVDAARAQARRLDTHAARGLLAGVPIAVKDI
FLTEQFPTRYGSPIYEHGIAGTDADCVARARAAGALVLGKTVTTEFAYFTPGPTANPRDPSRTPGDSSSGSAAAVAAGMV
PLAFGSQTAGSLIRPASYCGVFALKPTHGLHSLAGAKAMAPSLDTLGWLARDAGDLELMRCALAGEDYRPLPDARPAALR
LGICLTHEWHAIEPDGAQAFAHAQVLCTAAGAQLAPLVLPDALQGLMQAQQTIMAYEAARSLAAEWRDARARLSPAMQAL
IEAGLGCDAQSYAQALALAARGRAHLEHAMRDLDAVIAPAAPGEAPPGLARTGDPIFSRVWTLLGLPCVNVPGLAGPHGM
PIGVQLIGRPGDERRLLAVAAALHRVFHPTGAPQ
>SEQF1086_CAE43971.1 putative zinc-binding dehydrogenases [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRRVPENLFATRYRGSAAMTIGIAPMPSPRLRVRVQACLGDAGGLRLPGVAFIGSAGPGRRVAALATQAAAPGADIEIDA
GQAWTVADGLDEQSALLLAVLWPSAWIALVEIGGLRAGQQVLVHEADTPLGLLATVLARQADASVIAAARTAGGIAAALR
AGAAEGVLYGDPWPELAREHGGADLVFDPGAGRYAVASLPCARRRARMLALDMHDGPAGPPIGAAQLLRRQTSLAAAGWD
LVRDAPALQRACRALPPHWPRIAALLPLRPLSLSTSQEALP
>SEQF1086_CAE43972.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRAPDFSLRQLSYFLAAAECESVQQAAQALHVSAPAVSTAIAHLEALLGVQLFRRRHARGLILTEQGSAFAVQCCGILQE
AWGLGSLQGRGELHGQVRVGCLTTFAPFVIPPLLTRVQQHLPGVRLAWFEGHHEYLLEGLRTGTLDIAVLYDFEIPSGIK
LVALRAAPLQVVLPASHALAAKETLATSDLNTEPLILLDLPRTREYMLTAFSSNGAIPRIAHSVLSINMLLGMVAAGHGF
SLLNFCPPNALPGMGGIVSRAFESHVRQPNIVAAYSFRYHYPRAAAAIVEHISELVDELVIQAH
>SEQF1086_CAE43973.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLWKIMAVAALAAGPAHVALGQDIKIGALLETSGAIASLGQPTLEGAQLAIDQANAAGGIQGRKIVLVNVNSESDNTKT
VSGARRLLSQEKVSAVIGPVSSGSNFAVADVIERAKVPMIANGASRGIVLPPEKRRYTFIAPLTDEIVQTVMLRDMQARH
ITKVAMLHSDVAFGTNGRDTLNRLAAQYGVQVVATETFGHADTDMTPQLTKLRGSPAQAIVIWATGPGLAIATRNHRALA
IDTPLYLTHAANDFNYLRLAGEAANDILLPSSKLYVAGSLPSDDAQKAGLQSFVAAYTKKYGKPPATFSGNGYDSANLLL
QAMRAAGSDPAALRAQLEKGERYVGVTAIYAYGPEDHFGAKAESVRMLTVSNGAFELAAAP
>SEQF1086_CAE43974.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNSPDTLDPRDAAAWRAVTAVRPVLAGLLPAREAFAYPQRTLLHAGPPLPGDGEIPWPMLNSIVNAALYEGWAVDRADAL
YGVRTGAIRLAPAQDHRCVVPLAAILSPSQHVQVVRDAAGRAAPCHAALNGGNRWPIRLGRPETEVAEHLRWLNGPFAEQ
LRAGCEAGIDLVELADQALAAGDDCHGRTLAGTQALAASLRALGHAPEDGAVADYLAQSPGFFLNLWMAASKCMLSAAEG
MAGSSLVTAMGGNGREAGIQLAALPGRWFSRRCGAPRGALEPGLSGAQPLPAIGDSAVVEALGLGAMAMAHSPAQQQALG
AYMPEPAAALGAALLGPAHPAFERSHPRMGLAARAVAATGKAPVVALGMLDSLGTAGRIGGGIWTADPGLFAHALEFMAQ
HQQGESR
>SEQF1086_CAE43975.1 branched-chain amino acid transport ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNSSAIMLDVQRVGIRFGGLQALDDVSFQVRRGEILALIGPNGAGKSTLLNIVSGALAPGQGKVCFENEDVTGLPAHEVN
VRGLARTFQAAEILTALTVRENVMAAGVRRSGSGFLAGLAGLGWKTGTAQTLSEQAMMHLKTVGMAALADTSAAQLTAGQ
QRLLAAARALASGARLLYLDEPGAGLNSVEKDMLAGAIEQIRANGATVVFVEHNLAFVGRLADRIVVLNHGRILAQGEAA
AVRADPAVIAAYLGNTEIRPGLRPEAANAEAATVLEIDRLSVRYGALQALSDVSLQVRQGEIVSLIGANGAGKSTLLKAV
AGLLRPQAGRIAFRGADLASVPAEARTGAGIALAPEGRSLFPSLTVRENLMMGHYACVRRGGVMQLLAPRRETVAAMNQV
MEEITALFPRLAERMHQQAGTLSGGEGQMLAIGRALMSRPQLLMLDEPSFGLAPQIAREILESLPRLTERGLTVLLIEQN
ARAALQVSDRGYVLVNGRLVAQDTSASLLARSDIGEAFLGWEGADTPTRRQA
>SEQF1086_CAE43976.1 branched-chain amino acid transport system permease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKKLPLVLTLALLAAVYSTGNAYLINLFVVCAIYALPAIGLSLLVGHCGQISLGHAAFVGIGAYAAAIASQRWDMDPWLA
VLFAAALACAAAWAVGKLVFRLRGHHLAMATLALGMIVHTVLVEWHDVTGGPDGISVAGVLKVGSLELASDPAFFVLGWL
AVIVALILADNLIRSPFGLALRVVGESELVAGSIGIAPARVKQLIMMASGALAGLSGGLYTFWTGYISPDPFNVALSIKL
LLIVALSGFTGTWRTLVGVFFVVLVSEGMKSFGHLDVILYGLLLILTMLFPVQRLGNALRHLLARRANRAKAPVIKANVL
>SEQF1086_CAE43977.1 branched-chain amino acid transport system permease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTEFLQYLVSGLVVGCIYGLVAIGFTAVYNVTNIVNFAQGEVSMLGALATASMLAAGVPLPLAVVACVLLVGALGVVLER
FALRPVGNHAIRGIIITIGISVVLQGLAVVTWGTDAQSLPAFSGSTPISVYGVSMQPQAFWVLGTSVVLMAVLYVFLTRT
YLGRSFRACAMNPQAAALMGIPSSVMRGLGFFLSGAVGAIAGIIIAPIALMQYDSGAALGIKGFVACIMGGFGNPVGAAA
GGLLLGLLEAFSAGYISSGFKNAIAFVLLLAFLLVRPGGLFGEFDKVKR
>SEQF1086_CAE43978.1 hypothetical protein BP3721 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSPVHPGKVAWTGDNPGIYLKEQDDGPWTGLATYFHINYSPYGMGRGVLLLEQPDIAATLPQACNVCITDNEPLARYLM
KEFFARFNSFRVSAGTEAISYLPLTEARSAGDTRSRYQEILRSRDIEVVLTWDGLTEPYAVDMPPEKGPTGRHEMYSLFI
DATDASITLNGKPLRGRVTTRNFDGGKKSSAFLAFSESWMETPSDGTDKRTT
>SEQF1086_CAE43979.1 iron-sulphur protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEKKIVLVKPYSAYERDKTPAENADLTRVEKGSPMGEYLRRFWQPVALSEELGELPTAVRMFGENLVLFRARNGKPGLLE
KHCSHRGTSLEFGICEENGLRCCYHGWLFGVDGQILETPGDPPDSQLRFNVCHGAYPLHEYRGIIFGYFGPPADKPEFPV
YDTYDIPGDRLVPYCITYPCNWLQVHENVMDPAHAVFLHTRISFTQFAEAWGELPEMDFVPTPTGMIYVTSRRWEDKVWV
RSNDIVLPNLAQVGHIWEDGLTPKEFARVAITRWTTPIDDHTCRIIGWRHMHPDADPRGLADESLCGVETVDFFGQNGER
PYADRQRMPGDYDAQISQRPIAVHAMENLTRCDRGVAMLRQLLRRESRKIANGEAPAISPLRANGATPTYAHDTVVSIPP
ADTDDAACVREIGKAITAIVVKGDHHEQADRPEQVRERIRAYAAEQASTATSE
>SEQF1086_CAE43980.1 hypothetical protein BP3723 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTKTARDSQPADPHAQSWPHRPVNARKGTDVMPMPEEAPQVAGMPRRGRAIAEPGDPGVITPEDDVLDTSHLSNPQR
>SEQF1086_CAE43981.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAAPRLPYPIPIALTDALDRSVSAELVAVLVAVTQGEPRVLTTEDARALPAGPFELAHRSLQAGLRAWVETQTHHPLGYV
EQLYTFADSDRSNEAGARVISVSYLGLTREAGATGVAQVGWQHWYRYFPWEDWRAGRLAIIADEIAPRLLAWAGAGADAA
ARAQRRQRVALTFGLDGAGWNEDMVLQRYELLFEAGLVPESRHPDASGLPVAGQSMRHDHRRILATGIARLRAKIKYRPV
VFELMPPEFTLLQLQMAVEALAGRGLHKQNFRRLIEQQELVEETGGMASGAAGRPAKLFRFRRDVLLERAIAGSKLPLAR
QF
>SEQF1086_CAE43982.1 putative nicotinate-nucleotide pyrophosphorylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSINIGQAAPLAIDAAPTLRTAPAPLPQVMLEPLVRAALLEDLGRAGDITTDAIVPAQARAQTRLVARQAGVLAGLDLAR
LAFRLVDPEIEFHALLPDGAQLQPGAEIALIRGPARGMLTAERTALNFLCHLSGVASATASIVAAIGAGHTKVTCTRKTM
PGLRAVQKYAVRVGGGSNHRYGLDDAVLIKDNHVAIAGGIDAAVQRARAAIGHMVKIEVEVDTLEQLRVALRLGVDVVLL
DNMDLDTLREAVALVDGRAVTEASGRITPETAPAVAATGVDLMAIGWLTHSARVLDIGLDS
>SEQF1086_CAE43983.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE43984.1 putative glycosyl transferases [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRILQLNFEKGWRGGERQTLYCMRAFRKAGHDVELLCRAGGPLQARAAEEGFVTHGRRNVPGQLGFLASAGASYDIIHAQ
TANTVTWAVLTKALHRRPVAFSRRTSFVVEPGEEWKTGFKWRRVDLFVAISEMAAGEPRRLGIEPVIIRSAVEPHVIDPV
NVERLAREFALQGKKVLATSAALIHDKDPLTLVRAVGELARQRQDFVFLHFGAGGDREAQARAEAQALGLDGVYVFAGFR
KGVEDFYSIMDVFVMSSLEEALGSSVLDAFLQRVPVVSTDAGGLKESLADGRGVLCAVGDHHALAAGMARCLDDAAFRAD
VTQRAYDYVRTEHDVTEMGRRYLARFEQLLARR
>SEQF1086_CAE43985.1 putative UDP-glucose 6-dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKITVVGTGYVGLVSGACLADMGNEVLCLDTDAAKVAMLREGHIPIYEPGLEDLVKRNVAGGRLQFTDDIAASVAFGDVQ
FIAVGTPPGEDGSADLQYVLAAARSIARHMTARKVVVDKSTVPVGTADKVRAAMQEVLAERGVEVPFSVASNPEFLKEGA
AINDFMSPDRIIVGTDDEHTIDTMRRIYAPFQRTHERVMVMDVRSAELTKYAANAMLATRISFMNEMANLAEALGADIEQ
VRRGIGADPRIGYHFLYPGIGYGGSCFPKDVQALMRSAGEHALPMRVIEAAETANQAQKLRLAHKVVARYGADLQGRTFA
LWGLAFKPNTDDMREAPSLSTIADLTRRGARIRVYDPVAMPQAAKVLDDNPAVELVDDMYQALDGADGLLIATEWKVFRA
PDLTRVKQLLKAPLIIDGRNLYVPADMRAQGFDYQGIGRA
>SEQF1086_CAE43986.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIGEDASAARCGSRNSPPDGLPTPRRYWAAATVLTGMSLAVLDATIANVALPTIARDLNAAPSDAVWVINAYNVAVVVML
LPMSALAERVGFRRMFTFGLLLFTLSSLACVFAGQLWHLTLARVCQGVGAATLMCMFGGLVRNIYLLRMLGRGISINATT
VAVMSVLGPTLGSLILSVASWRWIFAVNLPIGIVIMCGLRFLPEVPRNKMPLDWLSALLAMLTLGIFISGVDLLGHDVLR
GIGMIAVAVAIGWLLVRRASGQTAPLVPVDLLRIQAVAYAVAASACTFAAQMASYVALPFYFQQVLERPYLQIGLLMAAW
PVGTAVVAPVAGRLSDRYAASTLSGAGAGIMALGMACLTLLPTTVSNPWIMAGMFLTGLGFGLFQTPNNRAMLSSAPRQR
SGAAGGVQATTRVFGQSFGTALVAIAFSVYPQHGPTLALALGTVCASLGVVVNVVRRRAEA
>SEQF1086_CAE43987.1 UDP-N-acetylglucosamine synthesis bifunctional protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLNVVILAAGLGKRMQSDLPKVLHTLAGRPMLDHVIGSARQLQPARIIVVVGHGADRVKAAFEGQPGLQFALQQPQHGTG
HAVQQAVPQLLEGDGEDDVTLVLYGDVPLVQPATLQNLLQARGRGVAVLTEVLADSTGYGRIVRDAQGQVCRIVEHKDAS
EAERAIKEVNTGILAAPTARLKDWLGRITNDNAQGEYYLTDVIGLAVGDGVPVGAAQPGASWETLGVNSRVQQAQLERAW
QSELARRQLEAGVTLADPARFDVRGTLSCGRDVFIDVGCVFEGTVTLGDGVRVGPHCVLRDVAVQAGARIEAYSHLQQAK
VGQEAVVGPYARLRPGADLGERSHVGNFVEIKNSVLQADSKANHLAYIGDADIGARVNVGAGTITCNYDGVNKHRTVIED
DAFIGSDTQLVAPVRVGKGATLGAGTTLTKDAPAGQLTISRARQSTIEGWKRPVKKS
>SEQF1086_CAE43988.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDSHTNPFVLPGMGQNSDLSGNPLLASMEMMRQAWAGLAGPGGLTQALPMAVPMNLEDLDRRINELRSVENWLRLNLSM
LSSSIQGLEVQRATIATLRSFVDSVSSVGADEAAGGASPLEVALGLKPAPQGGGAPTGQAGGQAAAPAAEAGAVPPSINA
AAQSASQAWWDLMQQQFNNLAAATAASMQAPAGETPPPGAADAPPAAAGKPKAARKSAAKPRAPRKRAPAKGAADKP
>SEQF1086_CAE43989.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRPSESAPRRRLHPLLGAAAVSVIILSAVAVAAMTGVLPNLSAGSSPQAAASAQEAALAGPEAANVASAPQQAPKQAQK
PAQSAQPAQQPAQAGAPACATCGVVEGIRTVQVPVRDDSNHLIGTVAGGVVGGVVGNQFGGGHGRDALTVLGAVGGALAG
REVERNIREQQTVTHYELTVRMSDGSRRQFRSAQPFAFASGDRVRVENDQLLPG
>SEQF1086_CAE43990.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDTPITLPELEQAINYWRHRAPSQGDESRLCAQAAALATPYALMIIGHRRDITPAELSQAARAAYQAWLDSRK
>SEQF1086_CAE43991.1 SCO1/SenC family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFAFTSARRRALQAVAAMGVAALLAACGESAPAFKGSDITGTQLGKKLALVDHNGKPRTLQDFAGKAVVVFFGFTQCPDV
CPTSLAELSQVMKQLGPDADRVQVLLVTVDPERDTPEILKQYVTTFDPRFLGLTGTPEQIKQAAASFKAYYAKVPTQDGA
NYTMDHTAAFYLFDGKGESRVLATNTAGAEALAHDIKALL
>SEQF1086_CAE43992.1 UbiA prenyltransferase family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSLAAPQTGLLRQYLVLTKPRVTQLAVFCAVIGMFLAAPGMPDLSHVVFGTLGIWLLAAAAFAINCLIEQEVDARMLRT
ARRATARGTISDIQVLSLSGLLGGAGMLVLYHLVNPLTMWLTFATFVGYAIIYTVILKPRTPQNIVIGGLSGAMPPALGW
AAVADSVPAEAWVLVLIIFIWTPPHFWALALYRNNDYIKAGLPMLPVTRGQQFTRLHILLYSFALLATTLLPYAIRMSGA
LYLASALALGGMFVWYAWRLYREYSDALARRLFRFSILYLALLFGALLIDHWVGLLR
>SEQF1086_CAE43993.1 putative cytochrome oxidase assembly protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDRIKQRYRKLVFFTWFLTLDLIMFGAFVRLTDSGLGCPDWPGCYGSVTPLGAMSDIHQAASSMPFGPVTLSKAWIEMIH
RYVGAFLGMLIIAIVWMAWRYRRELGRSPALAVGALIAVCVQGAFGAWTVTHKLMPVVVTAHLVFGLLVLSLMTWLSARE
RPHAPLSPQTRRWRPWMTVGFLLLLAQITLGGWVSTNYAALACMDFPTCHGQLLPEMDFHGGFSLIRALGELPSGEMISQ
HALTAIHWTHRNFAFVVFAYVGVLAWRLRGEPGLRGPATLMLALLAAQLFTGLTTIFFQWPLLIAVLHNGGAAGLTLAAV
VILVRLADAPQAAGVIRPQFDRV
>SEQF1086_CAE43994.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARSFAPSAPKRSMLPLVLVFLCALAPVLAAVIVYNNPQWWPEDSSNYGTLVQPQRPMPTAQQLQLTTLDGKPFDPAGLK
GKWLLGVADQAACPESCARKLFITRNSHASQGKNVDRVQRVWFITDDGEVPQKVLDAYRGTLMLRARPEQLGRYLLGQDA
AASAALFGPMWVIDPLGNLMLQFPPDADGVKVRKDISRLLYNSRIG
>SEQF1086_CAE43995.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAALLLLGIAAAILASLGRWQLHRADERRAVLAAIEGGRALAPLALAPDTPAPQLTAWRAASAEGQWLPQFSVLLENRNH
GGRPGYWLATPLRLHAGGAAVLVLRGWLPRALGAGQTLSVPAPPAGPQAVTGELMPRVPRLFELWSFGDARAGKLPDTLP
ASGALPPVVQNLQLDDYARASGLTLLPTVLMQTGEHNDGLARDWPQPSVDYNQNIGYAMQWFAFAGIAAIAWLVVAARAW
RRRRQA
>SEQF1086_CAE43996.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRVIVIVAFIGILASLASALVYLMKDKGSTNRTVNALTVRIGLSVALFLFVLLAHHLGWIESTGLR
>SEQF1086_CAE43997.1 putative cytochrome c oxidase, subunit III [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSASHSVQGKEAPYYYVPADSGHPVRTALALLAMGLGAAGWVNGAVWGKWVVLAGVIGLFLTLYFWFGDAIQESESGLYS
KRIDASYRWGMSWFIFSEVMFFAGFFGALWYVRTITTPWLGDLDHKLLLWPDFNATWPNFGPAGVVEHFQTVGPFWLPTI
NTALLLSSGVTLTIAHHALRENLRGKAIFWLFATVTLGFIFVACQAAEYIHAYADLNLKFNSGAYGSLFYMLTGFHGFHV
IVGATMLTVILIRLIRGHFTADNHFGFEGAAWYWHFVDVVWLGLYLFVYWF
>SEQF1086_CAE43998.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDDLHKLSQRKLSFFQTMKAVLWGFFGVRKGAGYQDDIARLNPVHVIVAGLLAAAIFVIALVAIVRWAVAGLA
>SEQF1086_CAE43999.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTPEQRRRNRNVALILLALVAAVFVWTFIRGAVLFAGVTG
>SEQF1086_CAE44000.1 cytochrome c oxidase polypeptide I [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSVTVDHVSPGHGHGHDDHHHAMPSGWRRWLFATNHKDIGTMYLIFSFFMLMEGGVLALLLRTELFEPGLQFFRPELFN
QFTTMHGLIMVFGAVMPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLPVAGIMLTVSFFVPGGATAAGWTLYAPLSAQ
MGPGMDLAIFALHIMGASSIMGAINIIVTVLNMRAPGMTLMKMPLFCWTWLITAFLLIAVLPVLAAAITMVLTDRHFGAG
FFNAAAGGDPVMYQHVFWFFGHPEVYIMILPAFGIVSAIVPAFARKQLFGYASMVYATAAIAILAFIVWAHHMFTTGMPV
TGQLYFMYATMLISIPTGVKVFNWVATMWRGSMTFETPMLFSVGFIFVFTIGGFTGLILSVAPIDIQVHDTYYVVAHFHY
VLVAGSLFALFAGTYYWLPKWTGRMYSEKLGKLHFWSSMISFNITFFPMHFLGLAGMPRRYADYAAQFTTFHQLATIGAF
WFGLSQLIFLWAVLRCYRGKGEVASAKPWEGAEGLEWTVPSPAPFHTFETPPEVK
>SEQF1086_CAE44001.1 putative bifunctional protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPCFEVSMKKWRGILGACALLIGSAAAAQVQDMPGGPRVNQLNLHEGVTQISRDVVWLHWMMLAICIVIFIGVFGVMFYS
IWAHRKSRGHKAATFHEHLGVEVAWTVIPFLIVIAMALPATKTVVAMKDTSSADVTVKVTGYQWKWGYEYLDGEAAGIKF
LSTLSTPRAQIENREPKGQFYLMEVDNHMVVPVDKKVRVVLTAGDVIHSWMVPDFGVKQDAIPGFLRDAWFRAEKPGIYR
GQCAELCGKDHAFMPIVVEVLAQPEYDKWVADQKKKMAASADDPNKEWTQAELVARGEKVFAANCVACHQANGKGIPGSF
PPLDGDPVVLGPKAAQINTVLKGKPGTAMAAFGGQLNDVEVAAVITYTRNAWSNAGKGQDPVVQPKDVVEAR
>SEQF1086_CAE44002.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPDTHYASQQRLTRLYAELGQRAQALPPDQARPLYIAGHCCGWVTHAACDALRASGLADLQPDADGLRIGADLAPGPTLD
ALLAQVAQSLRDARCLRGWRDELLDVCAGDLRLGAIERAAVRPLGLNTRAVHLNAWTPQGELWIARRAMTKSTDPGMWDT
LVGGLAGSGENLETALVRECGEEAGLDPHQLEQRTPLRTILHMHRRLPEGYQVEDLLTSTCVLPADARPANRDGEVMEIA
TTSVDHAVRRIEAGEFTLEAALVIVEDIMQRRAEGTT
>SEQF1086_CAE44003.1 putative sodium/hydrogen exchanger family [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDIGFLVFGLAGLLTLVCFMPPLAGRLKLPYSVLLALVGCLLGIGVHLHGWAPPVLGDLLDTIEHFEISSETFLMVFLPV
LLFETALSMNVRRLIDDIGPILMMAIVAVVVCTLVVGFAVDAVSSYGLIVCLLLGAIVATTDPAAVVGIFREVGAPKRLT
TLVEGESLFNDAASIALYSVLLAALGGSGELSVGAVFNDFIFHFVGGGLAGFLMGRLACALFAWLRGFPTAEITLTLTLA
YLSFFISEHYLGVSGVVATVIAGLVVDSTGRTRMSPTTFEFLSSAWGQFGFWANSLIFLFAAMLIPKLMAEADWQELLLV
LVVFAATLAARAIVVFGLLPLLRVARIGAEVSNPYKSVMWWGGLRGAVSLALALAVTEQSSVPEQARQFVAVATTGFVLM
TLMINGVSLRPLIRMLGLNQLSPVERTIRNQVLAAALEDLQGRTEEIAKVDHVNPEARDRIRAMFDASLTSVHDGQVGQM
TLDQRVAVGLSIVARREEEMFFDILKAQIVDWRLAEGLLARAERLEDAVRAGGLAGFEAGIVADVRYWRLFRMALRTHYM
FGFQGWLARELGKRFASLLTKRSVARDLMKFAREQVAPLLGEEAADRIIAAHQRRLDLIENALQALTLQYPSYSLWLQES
HLGRVARELERRRYRDMLEQFLISGEVYADLMAQLKARWQHIDKHPPLDIELGSAELVKRVPLFEGLSQDSLRAICRLLK
PRLALPDQHILTEGRHGQEMCIVASGAVVVHLPDHTTIELGSGEFFGELALLGEEQLVPDVTSLGYSKLLMLSARDFHAL
LARDEHLHERIQTVAKQRMRAIEVWKQYSQAAAAAAASTASEDSAPA
>SEQF1086_CAE44004.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDSAAPVRADAPAVLVQLTDMHLFDEPHTAMLGVDTEASLQAVLRQVGEDGLNPDALLLTGDLSQDGSPASYQRLHALL
AQTGLPVRCLPGNHDAPATLRAELGAWSDPVLDLGAWRIVLLDSTVPGSNGGHLADDQLDLLSRAARLAGDRPLLVAVHH
NPVQGDPDWHDTMMLDNAQLLFQRLQRLPQARVLLWGHVHQEFDCRRHNLRMLATPSTCFQFVVRDGKHCVDDAAPGYRW
LKLYADGSLATGVRRLDGDRWRALLRQNAG
>SEQF1086_CAE44005.1 RNA polymerase sigma-32 factor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPVDNLPLEAANMTQPSSSLALSGNALALAVANPGALGTIDAYISAVNRLPILTAEQEGQLARRLRDEGDLEAARELVVS
HLRLVVSVARQYLGYGLPHADLIQEGNVGLMKAVKRFDPERGVRLVSFAVHWIKAEIHEFIIRNWRLVKVATTKAQRKLF
FNLRSMRPDGQTLDPEQVDHIARELNVRREDVSEMEVRLSGRDLSLESQDDDDDSFAPIAYLSDEGRQEPSRVLDRMAHD
DLQGAGLGRALEALDARSRRIIEARWLQDDGGLTLHELAQEFGVSAERVRQIEAAALKKMRGALTPA
>SEQF1086_CAE44006.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLLPGLAMLFGRGGPRDEAGRRVFRLRPVRRLFGLLLLALAGVSGLLALSLVQFVRLTDDKPVAKVMVRQQGDGQFQLAT
RTPDQRMRDYTLYGDQWQIDAKVVRWRLPALLAGVPPLYRLERLSGRYQDTARERSAPRSVHALDDWPAPDLAQVKRLVP
NWLPFVDVQFGSAAYMPMFDGARYQVYLDPRGALFIRPADAVTAERLKQLGW
>SEQF1086_CAE44007.1 putative esterase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAVLELVSQHRCFDGWQRYYRHASKEIGLPMRFSVFVPPQAAHGPVPVLFYLAGLTCTEETFMIKAGAQRLAAQHGVMLV
APDTSPRGAGLPGEDEHWDFGVGAGFYLDATAEPWRSHYRMYSYVVDELHGIVTGELPGDAGRVGIFGHSMGGHGALVLA
LRNPDKFRSVSAFAPVVAPAQVPWGHKAFERYLGPDRQAWEAYDASALMRTLRQPYPEGILVDQGLADGFLVEQLRPELF
EAACRHAGQPLTLRRHKGYDHGYYFISTFIEDHIRFHVERLG
>SEQF1086_CAE44008.1 alcohol dehydrogenase class III [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTKAAIAWKAGAPLTVEDVDLEGPKAGEVLVEIKATGICHTDYYTLSGADPEGIFPAILGHEGAGVVMDVGPGVTTLKK
GDHVIPLYTPECRQCKFCLSRKTNLCQAIRTTQGKGLMPDGTSRFSIDGKPLFHYMGTSTFANHIVVPEIALAKVRPDAP
FDKICYIGCGVTTGIGAVVFTAKVEAGANVVVFGLGGIGLNVIQGAKMVGADKIIGVDLNPAREAMARKFGMTHFVNPSE
VENVVDHIIQMTDGGADYSFECIGNTKVMRQALECCHKGWGQSVIIGVAEAGAEISTRPFQLVTGREWKGSAFGGARGRT
DVPKIVDWYMEGKINIDDLITHTLPLDRINEGFDLMKRGESIRSVVVY
>SEQF1086_CAE44009.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARLPRLYAPGLPQLVQANFVQPLVPPSQPAPQDILNQLGSWLGESAQRHRVGVHAWVLANDRILLLATPADEEGLPRLM
QTLGRNLAARLRGGRVFAGRYRSALLEPGAWVLPSQVWLETYPVRSGAATEPDGWPWSSAGSHTGNTGAPPAQWQSDHAD
YWACGNTPFDRQANYRRLLHDGLSREQTQRIEQAVSGQWALGSPAFIASLAHTASRRVAPGQRGRPRKKPAPAAADTPDT
PGTVHTPTTPNTSN
>SEQF1086_CAE44010.1 glutamate synthase [NADPH] large chain precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPYTKSSDSCRPVAATPIDASRIGLPAPQGLYHPHNEHDACGVGFVAHIKGRKSHSIIQQGLKILENLDHRGAVGADKLM
GDGAGILIQIPDALYHDELAQQGIVLPPPGEYGVAMVFLPKETASRLACEQELERSVRAEGQIVLGWRDVPVDVEMPMSP
AVRGLEPVIRQLFIGRGADVMVPDALERKLYVIRKTASHAIQNMRLAHSKEYFVPSASVRTVVYKGLLLADQVGRYYRDL
ADPRTVSALALVHQRFSTNTFPAWPLAHPYRMIAHNGEINTVKGNFNWLRAREGMMQSAVLGDDLKKLYPIVYEGQSDTA
TFDNCLELLVNSGYSLAHAMMMMIPEAWEQHTQMDESRRAFYEYHAAMMEPWDGPAAVAFTDGRQIGATLDRNGLRPARY
LITDDDMVIMASEAGTLSIPENRIVKKWRLQPGKMFLIDLEQGRIIDDGEIKLQLANSRPYRQWIERLQVKLESLPAPRT
ASPATQTAVPLLDRQQAFGWTQEDFKFILEPMAASGEEVIGSMGNDAPLAVLSNRSKPFYNYFRQLFAQVTNPPIDPIRE
QMVMSLVSFIGPKPNLLDINNVNPPLRLEVTQPVLDFAAMAQIRDIDQVTGKKFRSYELDITYPAAWGSEGIEARVAALC
ARAVDAVQSGYNILIVSDRLVDADRVAIPALLATSAVHQHLIRAGLRTNAGLVVETGSAREVHHFALLGGYGAEAIHPYL
ALESLGHLADPDKAIKNYIKAIGKGLNKVMSKMGISTYMSYCGAQIFEAVGLQRALVDKYFTGTASNIEGIGIFQVAEEA
LRMHHAAFGNDPVLANDLDAGGEYAFRIRGEEHIWTPDSIAKLQHASRSNNYRTYKEYAQIINDQSRRHMTLRGLFEFRF
DPTRAIPLDDVEPAKEIVRRFATGAMSLGSISTEAHSVLAVAMNRIGGKSNTGEGGEDELRYRAEMRSGGSAIKDGDTLA
SVLGNDRVEADVALRAGDSLRSRIKQVASGRFGVSAEYLSSADQIQIKMAQGAKPGEGGQLPGHKVSEYIAKLRYSVPGV
GLISPPPHHDIYSIEDLAQLIHDLKNVNARASVSVKLVSEVGVGTVAAGVAKAKADHVVIAGHDGGTGASPVSSIKHAGT
PWELGLAETQQTLVLNRLRSRIRVQADGQMKTGRDVIIGALLGADEFGFATAPLVVEGCIMMRKCHLNTCPVGVATQDPE
LRKKFQGKPEHVVNYFFFVAEEVREIMAQLGIRRFDDLIGRTDLLDMRASVEHWKAQGLDFSRVFHRIVSDADVRQTEEQ
DHGLAGALDHQLIERSKPALERGEKVSFIVPVRNRNRTIGAMLSGAVAARYGHDGLPDDTIHIQCNGTAGQSFGAFLAHG
ITMDLVGEANDYVGKGLSGGRIVVRSPNDFRGFGPDHIIAGNTVLYGALSGEAFFNGVAGERFAVRNSGAATVVEGTGDH
GCEYMTGGTVVVLGTTGRNFAAGMSGGVAYVWDPDRTFRERCNSAMVELEPVLPHAEQQSANEIESWHSAQRGGERSTDE
TILRRLVEDHFRYTGSFRAREILGDWEASCGKFVKVMPTEYRRALGELWRAANPQQMAA
>SEQF1086_CAE44011.1 glutamate synthase [NADPH] small chain precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRISMGKITGFMEFQRLQEAAEAPQKRLKHWREFVLHLNDEQAKQQAARCMDCGIPFCSNGCPVNNIIPDWNDLVYRQDW
RRALDVLHSTNNFPEFTGRICPAPCEAACTLNINSDAVGIKSIEHAIIDKGWAEGWVTPQVPVRKTGKKVAVVGSGPAGL
ACSQQLARAGHSVTLFEKSDRIGGLLRYGIPDFKLEKSQIDRRIAQMEAEGVEFAPSTYIGNPDDAAADGLTVRTPQSLL
ADFDAVVMTGGSETPRDLPVPGRELSGVYYAMDFLRQQNKAVAGDRLSGQTLAKDKHVVVIGGGDTGSDCVGTSNRHGAA
SVTQFELLPQPPECEDKPMVWPYWPLKLRTSSSHDEGCERDWSVATKALAGSDGQVEKLVGVRVEWFKDEATGQMKMREI
EDSEFEIPADLVLLAMGFVSPVATVLDAFGVDRDARGNVRANTDDYRTNVDKVFAAGDMRRGQSLVVWAIREGRQCARSV
DEYLMGASELPR
>SEQF1086_CAE44012.1 putative outer membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYTLYRQGRATLGAALLAAGLLAAPARAHEAGDWLLKVGASQVRPKSNNGSVLNGSVDLDANNSVRPSFTVTYMATRNIG
IELLAAWPFEHDIRGSGLGRIASTKQLPPTLSVQWHFLPDSTVQPYVGVGLNYTTFFDTKTHGALEGSDLRLGDSWGLAG
QLGVDVKLNERWFLNADLRYIDISSKVKLDGQRIGTARIDPWVATVAVGYRF
>SEQF1086_CAE44013.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKSFRPLAAALLAAATLAAAGPARAQADSWPSKPITLIVPYAPSGFADTRVRLLARKLGESLQQSIVVENKAGAGGVIGT
NLVAKAAPDGYTIGTGNLAPMAVNPTLMPAIPYDAQKDLAPVVLIENSPLVLSVHNTLPVKNLQDLIALARQEPGKLTFG
SSGVGGAHHLSGEMFREQAGIDIVHVPYKGGSLAATDLMGGHITMMFEMGYSALPSIQSKKVHPIAVTSLKRLDVLPDVP
TMAESGLPGFESYNWQGIVAPAGTPAPIIARLNAEFNKILKDPEVVKAIADTDSQAGGGTPEEFGAFIKSETEKWAKVIK
AGNISLQ
>SEQF1086_CAE44014.1 putative ABC transporter, ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPVHTRNSSELALSLEDVALGYGDFTVLDGISMQVHAGQVVAVMGGSGSGKTTLLRAATGQIVAQRGSVQAFGTDVGSVS
QDGLQSLRKRMGVLFQQGALFTDLNVFENVAFPLREHTALDEAELTARVLDKLDAVGLRTAAHLRVAEISGGMARRVALA
RAVVLEPELILYDEPFAGLDPISMGITARLIRSLADRLGCATVLITHDVQESFAIADQVYLVGQGRLAAAGTPQQLAASQ
DPYVKQFLNGEPDGPVAFQYPETPAFRAWLAQQEGRKP
>SEQF1086_CAE44015.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAHKALNGLGGWVRGQIGGIGYFTRFLGALLARSGIAVRRPGLVSQQVHFIGNYSLLIIAVSGLFVGFVLGLQGYYTLN
RYGSEEALGLLVALSLVRELGPVVTALLFAGRAGTSLTAEIGLMKAGEQLSAMEVMAVDPMRRVLVPRFWGGIIAMPVLA
AVFSMVGILGGWIVGVLMIGVDAGAFWSQMQNGVDVLDDVLNGVIKSLVFGVTVTLVALYEGWQARPTPEGVGRATTRTV
VVGSLAVLGLDFILTALMFGN
>SEQF1086_CAE44016.1 mce related protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSREKTDFWVGLFVLLGAAALLFLALRAGNLSTFSFAPTYQLTANFDNIGGLKVRAPVKSAGVVVGRVSRIAFDDKTFQA
VVTFDLETAYRFPTDSSAAILTSGLLGEQYVGLAPGGEEEDFAEGGKIRYTQSAVVLEQLISQFLYGTAEKQGSSAAPET
GAEPKPQQ
>SEQF1086_CAE44017.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTKHSAARIATIAAAGVLLAGCAAPKNPDPRDPWEGFNRGVYKFNDTVDRALFKPVAQAYTFVTPQPVRSCVHNMFSNVG
DLWSATNSFLQGRGHDFVNTIGRFLFNTTMGIGGCFDVASTTGARKIPNDFGVTLGVWGFGQGPYLVLPIWGASSLRDGV
GLIGDWTGNQGATIGAIDNVPLRNSLWGLEAVDLRASLLDTTDTVDRVALDPYSFVRDAYLQRRAAMVRGTKTGDDTLPT
YEDEGDDDAAPAAPAAQPAAQPQ
>SEQF1086_CAE44018.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRFSIVSLLHRLFLAGALALAAGAQAAPDPMGPPDKFVLDAATQTIDILKSDQNVKAGNLAHINQVVDAHILPFVNFQKT
TRLAAGRYWRQATDTQKAELAKAFRGTLVRTYSGALTKVDNGTTIKLLPFRGDPNADDVVVRSLISQSNSQPVQVDYRLE
KTPQGWRIYDMNVEGIWLIENYRNQFAQQINQNGIDGLIQALNQRNQ
>SEQF1086_CAE44020.1 putative ABC-2 type transporter protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQSDTSAASRPLVQPRLDAGSGFPTLLRKELLRFWKVSFQTIAAPVITALLYLLVFAHVLEGRLVVYGSVPYTAFLIPG
LMMMSMLQNAFANPSSSLIQSRATGNLVFMLLPPLSHREIFAAYVLAAVVRGMAVGLCVWIVALFFIPLPPQNLAWVLLF
AMLACGIMGVLGLIAGLWSEKFDQLAAFQNFLIMPATFLSGVFYSIHTLPPFWQAVSHWNPIFYTIDGFRYGFFSVSDVS
PWHSLAVVAGVFVVLSLYALRLLGSGYKLRN
>SEQF1086_CAE44021.1 BolA-like protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSMLPTPEQVRQYIADGLPCEHLDVQGDGSHFDAVIVSAAFEGKRLIARHQLVYAALGDRMKAEIHALSMRTLTPAEYAK
AGS
>SEQF1086_CAE44022.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDKLRITGGSPLRGEVTVSGAKNAALPILCASLLTAEPLVLGNVPQLNDTSTTLRLLGRMGVRAERAGDGTVTLQADQVD
NLEAPYELVKTMRASILVLGPLLARFGQARVSLPGGCAIGQRPVDQHIKGLAALGAEIEIEHGFVVARATRLKGASIRTD
MVTVTGTENLLMAAVLAEGQTVLENAAREPEVVDLAELLIKMGARIQGHGTDRIVVDGVARLHGARHDVIADRIEAGTFL
CAVGAAGGDITLRGAAPDTMGATLDKLVEAGLTIETGPDWIRGAMHGRPRAVGARTHEYPGFATDMQAQLMALDTVADGT
AVIVENIFENRYMHVQELCRLGADIDIDGHTAVVRGVARLSGATVMATDLRASASLVIAGLAAEGETLVDRIYHLDRGYD
RMEVKLRALGASIQRVTGKETA
>SEQF1086_CAE44023.1 putative ATP phosphoribosyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNPAAAPLTLALSKGRIFEETMPLLAEAGIEVPENPESSRKLILPTSDPGLRLIIVRASDVPTYVQYGAADLGIAGKDVL
IEHAAQQSGRLYQPIDLNIAKCRLCVAVRQDFDYQAAVHQGARLRVATKYVQSAREHFAAKGVHVDIIKLYGSMELAPLV
GLADAIVDLVSTGGTLRANGLAAVEDVMPISSRLIVNQAALKTRGARLQPLIDAFRRASERIA
>SEQF1086_CAE44024.1 putative histidinol dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALINRLDSRDPGFKTALSQLLAFEAEQDESIDQAAAGILADVRRRGDAALLEYTQRFDRLAVDDATALEIPQADWHAAL
DSLPAAQRQALEAAAARVRAYHERQRGETWTYTEADGTMLGQQITALDRVGLYVPGGKAAYPSSVLMNAIPAKVAGVPEL
IMVTPTPDGVRNPIVLAAAAIAGVDRAFAIGGAQAVGALAYGTATVPAVDKIVGPGNAYVAAAKRRVFGTVGIDMIAGPS
EILVICDGKTPADWIAMDLFSQAEHDELAQSILLCPDAAFLAEVEAAIERLLPGMPRADILRVSLANRGALILVRDLEEA
CAIANDIAPEHLEISTEQPQRWTALIRHAGAIFMGRYSSEALGDYCAGPNHVLPTSRTARFSSPLGVYDFQKRSSLIQVS
REGAQTLGRIAAELALGEGLQAHAASAQYRLDQP
>SEQF1086_CAE44025.1 putative histidinol-phosphate aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTGVAAPERIARAVRADIRALTAYPVADAAGCIKLDAMECPYELPAEVRDDIARAARETPLNRYPAAANPALQAQVRQAF
EVPAQAGLLFGNGSDELIHLIIQACCEPGDTVLSPWPSFVYFDMAARLSHARFVGVPLTAGLELDLPATLAAIEAHQPKV
VFLALPNNPTGDLWPDAAVRAILDAAPGLVVLDEAYQPFAGHTWMPRIMDEPNAVVMRTVSKIGLAGLRFGYLAGHPAWI
AEFDKVRPPYNMDVLSQAVLAAVLRHKPVLDAQADRLRADRQPLADGLAALPGVTVFPSAGNFVLARFCGKLDGNAVHLA
PKTRKILVRNFSNAHPLLADCLRISVGTPTENAAVLSALQDILSA
>SEQF1086_CAE44026.1 imidazoleglycerol-phosphate dehydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLNMRTAEITRNTNETRIRVAVNLDGTGKQTIDTGVPFLDHMLDQIARHGLIDLDIKADGDLHIDAHHTVEDVGITLGMA
IAKAVGSKAGLRRYGHAYVPLDEALSRVVIDFSGRPGLEYHIDFTRARIGDFDVDLTREFFQGLVNHALMTLHIDNLRGF
NAHHQCETVFKAFGRALRMALEVDPRMGDAVPSTKGVL
>SEQF1086_CAE44027.1 amidotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTIAIVDYGMGNFHSVARALQHAAPDADIRICNRPEQIDAADRVVFPGQGAMPDCMRTLNESGLRAAVERAAASKPLMG
VCVGEQMLFERSEEGGTPCLGIFPGEVRRFAGPQFADPVAADQAAAAPPAAARERLKVPHMGWNQVRQTRSHALWEGIPD
GTHFYFVHSYYAAPSDPALTTGVTDYGVAFTCAVAAANIFAVQFHPEKSAEHGLRLYRNFVDWQP
>SEQF1086_CAE44028.1 histidine biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLLIPAIDLKDGRCVRLRQGDLDDATVFSEDPAAMASHWLDLGARRLHLVDLNGAVAGKPKNEAPIKAILQAVGDDIPVQ
IGGGIRDLDTIERYLDAGISYVIIGTAAVKNPGFLQDACGAFPGQIIVGLDARDGKVATDGWSKLTRHDVLDLAKKFEDY
GCEAIIYTDIGRDGMLSGVNVDATVRLAQHVRIPVFASGGIAGLSDIEALCAVEDDGVEGAILGRSIYEGALDFQAAQAR
ADELAK
>SEQF1086_CAE44029.1 histidine biosynthesis protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNASRIAAAGASTLTRRIIPCLDVTAGRVVKGVNFVNLTDAGDPVEIARRYNEQGADELTFLDITATSDGRDLILPIIEQ
VASQVFIPLTVGGGVRQVSDVQRLLNAGADKISINSAAVANPELVRAAADYHGSQCIVVAIDARRSSAEGEPARWEVFTH
GGRKATGLDAVAWARRMAAYGAGEILLTSMDRDGTKSGFDLELTRAVSDAVPVPVIASGGVGNLQHLADGVTTGRASAVL
AASIFHFGQHTVRECKQYMAERGIAVRLT
>SEQF1086_CAE44030.1 putative phosphoribosyl-AMP cyclohydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTEPTWMAEVVFDENGLIPAIAQDAETGQILMVAWMSREALAETAATGRAVYWSRSRQRLWRKGEESGHAQDVHELRLD
CDGDVILLKVHQNGGIACHTGRASCFYRRLEGTASQAEWITIDPVLKDPELIYK
>SEQF1086_CAE44031.1 phosphoribosyl-ATP pyrophosphohydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTPTAGDDILSRIADTLATRRPEAGGDPQSSYVAKLLSKAPDAFLKKIGEEATELVMAAKDGQPDRIISETADLWFHCL
VALTHYNLRPEDVLAELARREGLSGLEEKARRPRD
>SEQF1086_CAE44032.1 MttA/Hcf106 family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDNCIFCKIARGEIPAKKVFEDDEFVAFHDINPAAPVHLLLIPRRHVVSLQDIAEGDAGWLGRMTVLASRLAAGNGCNP
GPDGGFRLMANSGAEGGQEVPHLHFHILGGPRPWKGRVAPAA
>SEQF1086_CAE44033.1 Sec-independent protein translocase protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGSFSIWHWLIVLVIIALVFGTKKLRNVGSDLGSAVKGFKEGMKDASADKPADQVTQQRVSDDTIDVQAKEKSNS
>SEQF1086_CAE44034.1 Sec-independent protein translocase protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFDVSFTELMVIGVIALVVIGPERLPKVARTIGHLLGRAQRYVNDVKSDIRREIELDELRKFKNEMDETARSMQTSLRET
EDTLRDSTQALRAELDDTARDASKAVNGADAPAEPAPAVASDTDTRSIAPPAAATPADKTPPTGSAT
>SEQF1086_CAE44035.1 putative Sec-independent protein translocase protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQDASNDNPDQQQDSFISHLVELRSRLLKAAGAVVAVFIVLFLYPGASAIYDVLAQPMLASLPEGTRMIATGVITPFMV
PVKVTMMAAFVVALPVVLYQAWAFVAPGLYKHEKRLALPLILSSTLLFIIGMAFCYFFVFRTVFHFIATFAPQSITPAPD
IEAYLSFVMTMFMAFGITFEVPVAVVLLVKTGIVEVAKLRAARGYVVVGAFVIAAVVTPPDVVSQFMLAVPLCLLYEVGL
LCARLVTPRRRGEEESEDDQALTERH
>SEQF1086_CAE44037.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNMTRLLAVIGIFIATAGIAAPVSADTYPARPIQMIVPFPPGGSTDVMARVLARTLQDSLGQPVVVQNRAGAGGVIGTDA
TAKSAADGYTLLLSSSSAPLAVGLSLMPSIPYKVLEDLVPVSMVGDVPLVLVTNPKLKLDSLDALIAQCKARPGEVAFAL
NALGSQAHLLTELFQLRTGAAINMIPYKGSGPAVVDLLGGVVAADIENMPAVLEHIRSGNLRALAILSSDRSTHFPAVPT
MAELGYPEFVASPWFAVMAPKGTDPKIIVLLNRHINEALQSKAVVEAFAAQGATPVIATPDQTRGFIADEIQRWAGVVRE
TGAKLK
>SEQF1086_CAE44038.1 pertussis toxin subunit 1 precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRCTRAIRQTARTGWLTWLAILAVTAPVTSPAWADDPPATVYRYDSRPPEDVFQNGFTAWGNNDNVLDHLTGRSCQVGSS
NSAFVSTSSSRRYTEVYLEHRMQEAVEAERAGRGTGHFIGYIYEVRADNNFYGAASSYFEYVDTYGDNAGRILAGALATY
QSEYLAHRRIPPENIRRVTRVYHNGITGETTTTEYSNARYVSQQTRANPNPYTSRRSVASIVGTLVRMAPVIGACMARQA
ESSEAMAAWSERAGEAMVLVYYESIAYSF
>SEQF1086_CAE44039.1 pertussis toxin subunit 2 precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPIDRKTLCHLLSVLPLALLGSHVARASTPGIVIPPQEQITQHGGPYGRCANKTRALTVAELRGSGDLQEYLRHVTRGWS
IFALYDGTYLGGEYGGVIKDGTPGGAFDLKTTFCIMTTRNTGQPATDHYYSNVTATRLLSSTNSRLCAVFVRSGQPVIGA
CTSPYDGKYWSMYSRLRKMLYLIYVAGISVRVHVSKEEQYYDYEDATFETYALTGISICNPGSSLC
>SEQF1086_CAE44040.1 pertussis toxin subunit 4 precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLRRFPTRTTAPGQGGARRSRVRALAWLLASGAMTHLSPALADVPYVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLG
AAASSPDAHVPFCFGKDLKRPGSSPMEVMLRAVFMQQRPLRMFLGPKQLTFEGKPALELIRMVECSGKQDCP
>SEQF1086_CAE44041.1 pertussis toxin subunit 5 precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQRQAGLPLKANPMHTIASILLSVLGIYSPADVAGLPTHLYKNFTVQELALKLKGKNQEFCLTAFMSGRSLVRACLSDAG
HEHDTWFDTMLGFAISAYALKSRIALTVEDSPYPGTPGDLLELQICPLNGYCE
>SEQF1086_CAE44042.1 pertussis toxin subunit 3 precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLINNKKLLHHILPILVLALLGMRTAQAVAPGIVIPPKALFTQQGGAYGRCPNGTRALTVAELRGNAELQTYLRQITPGW
SIYGLYDGTYLGQAYGGIIKDAPPGAGFIYRETFCITTIYKTGQPAADHYYSKVTATRLLASTNSRLCAVFVRDGQSVIG
ACASPYEGRYRDMYDALRRLLYMIYMSGLAVRVHVSKEEQYYDYEDATFQTYALTGISLCNPAASIC
>SEQF1086_CAE44043.1 pertussis toxin transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNPLKDLRASLPRLAFMAACTLLSATLPDLAQAGGGLQRVNHFMASIVVVLRGASVATVTIAIIWAGYKLLFRHADVLDV
VRVVLAGLLIGASAEIARYLLT
>SEQF1086_CAE44044.1 pertussis toxin transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRDPLFKGCTRPAMLMGVPATPLAVCSGTIALLGIWFSIAFLALFPVALLAMRIMIRRDDQQFRLIWLYLRMRWLSRDRT
HAFWQSTVYAPLRYAERRRRLRKP
>SEQF1086_CAE44045.1 putative bacterial secretion system protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRRGGQTAFAAIARNERAIAAFIPYSSHLTDTTLITHGADLVRTWRVQGIAFESAEPELVSQRHEQLNGLWRAISCEQV
ALWIHCIRRKTQAGLDARYENPFCRALDASYNARLNARQAMTNEFYLTLVYRPGHAALGKRAHHGQAEVRRQLLAHVRRM
DEIGSLIETTLRSHGENHEQAITVLGCETDSAGRRYSRTLTLLEFLLTGHWQPVRVPAGPVDAYLGSSRILAGAEMMELR
APTCRRYAQFIDFKEYGTHTEPGMLNALLYEDYEYVITHSFSAVGKRQALAYLQRQRAQLANVQDAAYSQIDDLAHAEDA
LVNGDFVIGEYHFSMMILGADPRQLRRDVSSAMTRIQERGFLATPVTLALDAAFYAQLPANWAYRSRKAMLTSRNFAGLC
SFHNFYGGKRDGNPWGPALSLLSTPSGQPFYFNFHHSGLDEDCRGQMMLGNTRIIGQSGSGKTVLLNFLLCQLQKFRSAD
ADGLTTIFFDKDRGAEICIRALDGQYLRIRDGEPTGFNPLQLPCTDRNVMFLDSLLAMLARAHDSPLTSAQHATLATAVR
TVLRMPASLRRMSTLLQNITQATSEQRELVRRLGRWCRDDGAGGTGMLWWVFDNPNDCLDFSRPGNYGIDGTAFLDNAET
RTPISMYLLHRMNEAMDGRRFVYLMDEAWKWIDDPAFAEFAGDQQLTIRKKNGLGVFSTQMPSSLLGARVAASLVQQCAT
EIYLPNPRADRAEYLDGFKCTETEYQLIRSMAEDSHLFLVKQGRQAVVAQLDLSGMDDELAILSGNARNLRCFEQALALT
RERDPNDWIAVFHRLRREASAGLR
>SEQF1086_CAE44046.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAGLSRILLSCTLACLLAGQAAQASVDDPTRAGGDNRVRALRADQARRDVLLTACRDDPGHRRGEPDCVNAERAQALQQW
QAAAMTSVDAAFSDLAGALRNAAPRRMEAAIVRLTRQLQPLVYSMMTLLVLLTGYALLARRDRPFEWHIRHALLVAVVTS
LALSPDRYLSTVVAGVQDVAGWLSGPWTAPDGAAGRGGLAQLDQFAAQAQAWVAQLAGQAANDANPGSAVNWLLCAMIVA
ASAGGWLCLAASLLIVPGLIVTLLLSLGPLFLVLLLFPALQRWTNAWLGALVRALVFMALGTPAVGLLSDVLAGALPAGL
PQRFATDPLRSTMLAATLCATATLMLLTLVPLASSVNAGLRRRLWPNAAHPGLAQAHRQAAARQYAPRPAAAAAAAGPHQ
AGTYAASATPAPAPARPAPSFPAHAYRQYALGGARRPPPRVRRDDRPAPAPDRRVLPRKPNLP
>SEQF1086_CAE44047.1 putative bacterial secretion system protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIHAHSNARLLRWAILAIAPVTLGACAPNGPPGLPYPDGKPLIPINTAAPEQGSSCQTRAP
>SEQF1086_CAE44048.1 putative bacterial secretion system protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPDPRPLTPDQTHGRGHAEAAVDWEASRLYRLAQSERRAWTVAWAALAVTALSLIAIATMLPLKTTIPYLIEVEKSSGAA
SVVTQFEPRDFTPDTLMNQYWLTRYVAARERYDWHTIQHDYDYVRLLSAPAVRHDYETSYEAPDAPDRKYGAGTTLAVKI
LSAIDHGKGVGTVRFVRTRRDADGQGAAESSIWVATVAFAYDQPRALTQAQRWLNPLGFAVTSYRVDAEAGQP
>SEQF1086_CAE44049.1 putative bacterial secretion system protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMAARMMAAGLAATALSAHAFRIPTPGEQDARIQTVPYHPEEVVLVRAWNGYVTRIVFDEQEKIIDVAAGFADGWQFSPE
GNVLYIKAKSFPAQGSPAQAPEPGLWNTNLLVKTDRRLYDFDLVLASADAATPQALQRSRMAYRLQFRYPAAPQAASRAS
PVGPAVPAGALNRRYAMQVGNGSDGIAPIAAYDDGRHTWLTFRPGQPFPAVFAVAPDGTETLVNLHIDNQSLVIHRVAPV
LMLRSGASVIRIVNQNGDASESPAFECHAEPAL
>SEQF1086_CAE44050.1 putative bacterial secretion system protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLNRPSSPDGGEAHAWPPDPEIPVFANAEHAHRRPLRWMFALVAVALSCLLATGIWRSRAAPPHAATQTVAPAGQALPPG
RIFTVHPREPEPAPLPDMPAAPDPILPQPRPAPPVPPPPIRAPYDYDEPAPRRDSAALKSGPAMMVATAARLGQTERAGM
ADDGVSADAATLIGRNVSRATRSGGRDYRLLPGTFIDCILQTRIVTNVPGLTTCIVSRDVYSASGKRVLVPRGTTVVGEY
RADLAQGSQRIYVAWSRLFMPSGLTIELASPAVDGTGAAGLPGVVDDKFAQRFGGALLLSVLGDATSYMLARATDARHGV
NVNLTAAGTMNSLAASALNNTINIPPTLYKNHGDQIGILVARPLDFSILRGTNE
>SEQF1086_CAE44051.1 putative bacterial secretion system protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNDAAPDRQASVDFHLQALHPWLSRQDIAEICVNRPGQLWYEDRNGWNRQESGALTLDHLHALATATARFCDRDICPERP
LLAASLPGGERVQIVVPPACEPGTLSLTIRKPARRIWPLSELLRDTLDLPGVPGASQARPDPLLDPWRRGAWDDFLRLAV
QAGKAILVAGQTGSGKTTLMNALSGEIPPRERIVTIEDVRELRLDPATNHVHLLYGTPTEGRTAAVSATELLRAALRMAP
TRILLAELRGGEAFDFLQACASGHSGGISTCHAASADMALQRLTLMCMQHPNCQMLPYSTLRALVESVIDIVVVVERRAG
QGARRRVVDIWYRDGLPAP
>SEQF1086_CAE44052.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNLTLYLLTVLIWGTTWIAIKLQLGVVAIPVSIFYRFALAALIMMAALALLRKLQKLDLRGHLLCLGQGLFLFCLNFLCF
YAATQWIPSGLVSVVFSAATIWNAVNARLWFGTPIAPRVMLGGACGLAGLLLLFWPELASHAAEAGTLKGLGLALLGTLC
FSTGNMLSAAQQRAGIRPLTGNAYSMTYGALILLAGTLAAGVPFAFDPSPTYVGALLFLAVPGSIVGFTAYLTLVGRMGP
ARAAYCTVLFPVVALTISTFVEGYRWTPQALAGLALVMLGNVLVFARWRARTARAA
>SEQF1086_CAE44053.1 AraC family regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLAASDPAGFSVFRTLAGAGTARLERAATLGDGVAAAQWRRAGHEVVDYDHPGHHTLSLYLHGGEKSFRVGNDGYGGAG
KFCVLPSEHRSRWNMNDTVRFLHLYIAPQRLAREAVWRLDCEPRELALRDRTYIQDPALGQACHILLDADWTDPSQRLAA
SAASETVLHHLLVQGTGRRPGMPARGGLAPVVRRRMRDYIEAHLHEPLTLERLAAQAALSTYHFARMFHVSFGVPPHLWV
QARRLARAQALLRAPGQAGLDAVAQASGFGSASHLSRVFRQATAATPGQYRAGARAH
>SEQF1086_CAE44054.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPIATSAYEHAYSDRRFWRKLRGHAAGAGRQALEKALWLYFAVQNPATPKWARRVIYGALGYFVLPLDAIPDLAPLVGYT
DDLGVMTAALATVAFAITDDVKAQARGKLDQWLGPAANDAAGNG
>SEQF1086_CAE44055.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMPPATGSTHRSAVWLAETVRLREEHWGPLEDADAVRQARQLAPDFTLRILARAQALGRREGLQDLLVHWRQGAALTFVV
LAVAALLAGVGVALGALGSGARPVNVLWALDALLGLHALTFVLWLASFALRPRAAGLGGIWLWATRKLARGPDAALIPQA
LLDLLARAGALRWLLGAVSHILWLAALCAALATLLIVLSTASYRFVWATTLLQPETFVTLTQALGWLPGQLGFALPDAAL
VRASDGAQVLPATAQVQWSIWLLGALVCYGIAPRLLAALYCLAMAARALRGLRLDTSLPGYAVLRDRLLPPAASTGIDRP
ADPLHAPRMIAAQVLPDLANRPVLAALELAPDQPWPPAGLPANVFDAGNLDTREQRSALLDALARSAASRLLIACDARQT
PDRGTLALLAELSDKAAQTRVWLLQAGAAGAGQGRGSLWQARLLDAGLPEAAILRDADHPLRWLEAAHD
>SEQF1086_CAE44056.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTEAALRIAVVGHTNTGKTSLLRTLTRNPDFGEVADQPGTTRHVEGARLAIDNAAAIEWFDTPGMEDSIALLEYLERLQA
PGERLDGPARVRRFLESPEAHRRFEQEARVLRKLLECDAGLYVIDARDPVLGKHRDELAILASCARPLLPVLNFVNAPEH
RADQWREAMARLGLHAVLEFDTVAPPLDGEAQLYARLAALLDRHAAMLQRLAQALAQQREQRRQAACVLVADLLVDVAAL
HVSSPGDEAALQEAAATLREQVRRREQACVDALLALYNFHRDDYDGAELPLQGERWGMDLFHPQALKDMGVQLGVGMAAG
AMAGAAVDLLSAGLSLGTGMLIGAAAGGLWQGVERLGKRVAGKLRGYRELSVDDPIVRLLALRQRQLIHALERRGHAART
PVQLQRPDDRAWQSGPLPDGLKEARSRPEWSALGDRYQEDERRKRVVAQLARQLAQAGDA
>SEQF1086_CAE44057.1 putative extracellular solute-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRISPFIKHTALALAIAAAGLSATANAKTFRWSYQGDATSMDPMALNETFTLGFQGNIYETLAGYDGELKLVPLLAESWE
NTEPTKWVFKLRKGVKFHDGSPFTADDVIFSWKRSLTPGSDMKGYGAKASEIRKIDDHTIEVITATPNPILPREWVFLYI
MSKSWSEKNKTTEATNVKGDNQGNYANLHTNGTGPFMVTERQPDVKTVLKRFDGYWDKNIKTNIDEVVFQPISQEATRVA
ALISGEMDLVQPVPVQDWKRLDDAPGVRPLTAPEARAIFIGMDQARDELLFSDVKGKNPFKDARVREAVVLAVDTKAIND
KIMRGAAKPLGSLIATAINGYDDSFGAPIKPDVERAKKLLAEAGYPKGFTVTLDCPNDRYVNDEKVCQAVAGMLARVGIK
INLLAQTKSKYFGKILLQAGNQTSMYMLGWTPSSIDAHNALLNLAACRDAKTAAGQFNLGGYCNKKVDELTAQIGVETDQ
AKRNAMIKEAFEIVRKEYGYLPLHQQPMSWGVKDNIKLIQRADDVLDLRNVVMP
>SEQF1086_CAE44058.1 putative transport system permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLAFIARRLFQSLLVMLTVALIAFSMFRYVGDPIASMVGQDTTPQQRAQLRVDLGLDDPFVVQFARFVGNAVQGDFGISY
RQRRPVAELLEERLPATLELSFVSALMALVFGIPMGIYTALRRHGVLSKTFMALSLAGISLPTFLIGILLILVFGVQLRW
LPSFGRGEVISLGWWSTGLLTRSGLAALIMPAITLALFQMTLIMRLVRAEMLEVLRTDFIKFARARGLPERLINFRHALK
NTLVPVITITGLQLGSIIAFAIITETVFQWSGMGLLFIQAISMVDIPVMAAYLVLIAFFFVVINLIVDMLYFAVDPRLRV
QSK
>SEQF1086_CAE44059.1 putative transport system permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIARLAPYFARASDSDLWHSFKRSPGAIISAVVTLIIVLGALAAPLVAPHNPFDLASLNIMDANTPPAWEADGNSAFVLG
TDDQGRDILSAILYGSRVSLLVGFASVLFAMVLGVTLGLISGYAGGRVDSIIMRIADVQLLFPAILVALLIDGVARGLLP
RDMHDKLALYVLIFAIGISGWVQYARTVRGSTLVERNKEYVQAARLIGIGPFTILRRHILPNVMGPVLVIATIHLAIAII
TEAMLSFLGVGVPPTAPSLGTLIRIGNSYLFSGMWWISIFSGIALVALVLSVNLLGDWLRDALNPKLR
>SEQF1086_CAE44061.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLNLHS
>SEQF1086_CAE44062.1 arginine biosynthesis bifunctional protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAVNLQIPSESEILPVAGVEIGVAEAGIRKAGRRDLTVFRLAPGSAVAGVFTRNRFRAAPVQVCEAHLAQGGPIRALVVN
TGNANAGTGAPGLKNAQDTCAALGKLLDVPAEQILPFSTGVILEPLPMDRLTAGLPAAVADLRADGWYGAAHGIMTTDTL
PKIHSRRVNIGGKTVTITGISKGAGMIRPNMATMLGFLATDAGIAQPLLRQLAIELADVSFNRITVDGDTSTNDSFILIA
TGQAGVTVDSAGDAAYAALRDALAAAATDLAQKIVRDAEGATKFMTIRVEEAGNTEEALKVAYAVAHSPLVKTAFFASDP
NLGRILAAIGYAGIDDLDVSRLRLWLGDVLVAVDGGRNPDYQEADGQRVMKQAEILVRIALGRGQVADTVYTCDFSHEYV
TINADYRS
>SEQF1086_CAE44063.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTATDLTPLLARAERVLAQLEAWLPPAPPDIDWSAHAYRWRKRGSRGWLDAVRHVARIELDDLQHIERQKDIIDRNTRQF
LESKPANNVLMTGARGTGKSSLVKAMLAAYGDRGLRLIEADKSDLGDLADIVELVAARPERYIVFCDDLSFEEGEAGYKA
LKSVLDGSVAASGDNVLIYATSNRRHLMPEYMSENLAAKHQPDGEIHPGETVEEKISLSERFGLWLSFYPFKQDDYLDIV
YHWLRELNCPADQIEASRTEALQWTLERGSRSGRVAYQFARDWAARHV
>SEQF1086_CAE44064.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSEKIVDVAAGLILRPDGQLLLGQRPEGKPWAGWWELPGGKLEPGETVLQALARELHEELGIRVTEAHPWVTYVHVYPHT
TVRLAFCHVTGWEGEPRGLENQRLEWVDPARAHEVGDLLPAALPPLRWLQLPTAYAISAIGAPAALADFTARLRQALDGG
LKLVLLREPDWPGGADAASLRDAMQAILAQCRAAGARLLVSSRHPQAWWREADGVHLTARDAQALKQRPALPEGALVGVS
AHGHAEIVHARDLGADFAVLGPVLATASHPEQAPLGWPGFAAGIRDAGMPVYALGGQSPATLAEARLHGAHGIAGIRGLL
>SEQF1086_CAE44065.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNNHKHARLTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKWLARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFA
QQRRQRLPLWRIAREAGRSLATVARYMERIGLSRLASLEPPAPVRRYERASPGELLHIDTKRLGRIRGVGHRITGDRAQN
RNRGIGWDAVHLAIDDFSRVSFARILDDEGGDQCAEFLRQATAYYASLGVRIDRVMTDNGSGYVSRTFRAVCVELGIRHI
RTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQPFIDRYNWCRPHSALGHQPPITRIPDVNNLLRIDS
>SEQF1086_CAE44066.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE44067.1 putative outer membrane efflux protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPGFRFSVPPRRRLAVAALCAALGGCAVGPDYQRPAIDVGAAYKEAAAPQPGWTPAQPSDESARGQWWQVYGDPVLDGLV
QQLNQGNYSVAQAEANYRQAQALVRNARAGFFPTIGAGADVTRSGSGGGSGAGSNGSSVGNQYSLSGSVSWEVDVWGRVR
REVESSRAEAQASAADLAVTRLSAQAALVQNYLQLRVLDEQKRLLDATVLAYERSLRLTQNRYEAGVVGKSDVAVARTQL
ENTRAQSIDLDWQRGQFEHAIAVLMGQAPSRFALPAQPFAQQLPDIPAGLPSQLLERRPDVAAAERRAAAANAQIGVAQA
AWFPDLTLSASGGFRSGQFAEWLTAPARFWTLGPALAMTLFDGGARSARVEQARAAYDAQAAAYRQSVLTALREVEDYLV
QLRVMEHEQQVQRNALESARESLRLARNQYEQGLIDYLSVAVLETTALNTERNAISLLGSRLNASVQLIAALGGGWQGLP
AEAAASAAAEPSAP
>SEQF1086_CAE44068.1 AcrB/AcrD/AcrF family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MILSAPFIVRPVATTLLCLGVVLAGLLAYRLLPVAPLPQVDIPTISVSASLPGASPETMASSVATPLERSLGSIAGVTEM
TSRSSQGSTRITLQFDLSRDVDGAARDVQAAINAARSLLPTSLRSNPTYHKANPSAAPIMTLAMTSATLGQGKLYDLAST
IVAQKLAQVNGVGEVTVGGSSLPAVRVNLIPGALANRGVSLDEVRQALSSANANRPKGMVENDQYHWQVMASDQLDRAEQ
YRPLIVAWRDGAAVRLSDVASVEDSVEDLYQTGFYNDRKAILMIVRRQADANIIETVDAVRAQLPQLAALLPGDVDLTVA
QDRTPSIRASLHEAELTLVIAVGLVVLVVLLFLRRLRAAFIPSVAVPVSLIGTFCVMYLCGYTLNTISLMALIVATGFVV
DDAIVVLENIMRHIERGATPMRAALRGSREVGFTVLSMSLSLVAVFIPILLMGGVAGRLFREFAVTLSASILVSLVVSLT
LTPMMCARLLRAEPAAPRPPGRIGRLWTRLYGGMQGGYERSLGWALAHARLMMLILAATIGLNVYLYMVVPKGFFPQQDT
GQLLGFFRGDQGTSFQATVPKLEYFRKVILADPAVQSVTAYAGGRGGSNSSFMQIQLKPLEERGVSADTVINRLRGRLQN
EPGARMFLVAQQDIHIGGRQSSGSYDYTLMSGDLALLREWMPRVQRAMAALPEITDVDADVEDKGRQIDLVIDRDAATRL
GVSMATISAVLNNSFSQRQVSVIYGPLNQYHVVMGVDPRFAQDIESLKQVHVIAADGQRVPLAAFAQLKVANAPLSVSHQ
GLFVADTISFSLSPGVSLDQATGAIDAAVARIGLPSDQIQAGFQGTAAELQKTLARQPWLILAALVTMYIVLGILYESLV
HPLTILSTLPSAGIGALLALMLLGHEFTLIALIGVFLLIGIVKKNAIMMVDFALEAERRDGLDARAAILRACLTRFRPIM
MTTMAAIFGALPLMLASGPGVEMRRPLGITIVGGLVLSQILTLYTTPVVYLYLDRFRLWAARRRAARSAPDPTRP
>SEQF1086_CAE44069.1 AcrB/AcrD/AcrF family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSPSRLFILRPVATTLSMVAILIAGLIAYRLLPVSALPEVDYPTIQVVTLYPGASPDVMTSLVTSPLERQFGQMPGLNQM
SSTSSGGASVITLQFSLDLSLDVAEQQVQAAINAASNLLPNDLPVPPTYNKVNPADAAVLTLAVTSPTMPLPQVRDLVDT
RMAQRLSQIPGVGLVSVAGGQRPAVRVQVNPQALASAGLSLADLRTAVVGANVNQPKGNLDGPIRSTTINANDQLKSPTD
YNDLIIAYRNDAPLRLSDVARAVQGAEDIRQAAWVGDKPAILLNVQRQPGANVIDVVDCIHALLPQLRAAMPATLDLVVV
ADRTQTIRDSVADVQFEMLLAVGLVVLVTFLFLRSLTATVIPSVVVPLSLIGTFGIMYLAGFSINNLTLMALTIATGFVV
DDAIVMIENIARHLEEGETPLQAALKGAAQIGFTLISLTFSLIAVLIPLLFMTEVVGRLFREFAVTLAVAILISLVVSLT
LTPMMCARLLRPESEQRHGRFHQATGALIDRVIAGYDRMLLVALGTFALTVLLYIVVPKGFFPQQDSGLIQAITQAPQTI
SFAAMSQRQQEAARIIVQDPDVAAVSSFIGVDGSNPTLNNGRMQIALKPQSERSGDLKTVMARLQDALHGGTDLGLTVYM
QPVQDLTIEDRVSRTQYQMTLSNPDLAVLSEWAPRLVERLRQVPQLADVTYDLQDQGLQTWVEIDRDAASRLGITAAVID
EALYDAFGQRLISTVFTQSNQYRVVLEVLPQFRQSPQSLDHIHVPTASGAQVPLSSVARISEGRTVLAVNRLDQFPMTTV
SFNLAPGASLSGAVEAISAVQAEIGLPLAIDTRFQGAALAFQNSLDSTLWLILAAVVTMYIVLGILYESYIHPITILSTL
PSAGVGALLALLISGTDLDMIGIIGIILLIGIVKKNAIMMIDFALEAERKRGLAPREAIHEAALLRFRPILMTTLAALFG
ALPLMLSTGTGAELRQPLGLVMVGGLLVSQVLTLFTTPVIYLMFDRLARRRGGAGAAARQAP
>SEQF1086_CAE44070.1 HlyD family secretion protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPESRSVAPPARQGRRRLIAAAIAVLAVLALAWWLWPKDTGGQQGRPGGRGAMRGGPASMMNMAVPVRVGEARTQDIQIV
LRALGTATAYNTVTVRSRVDGELVKVAFQEGQHVKAGDLLAQVDPRPFEVALAQAQGQQQQNLAQLENARRDLQRYQTLY
KQDSIARQQLDTQAALVRQYEGTIKSDRAAVDSARLQLDFSRITAPIAGRLGLRQVDQGNLISSGDANGLVVITQTQPIA
VVFTLPETQLPEVLAQLRAGRQLPVEAYDRADTRRIASGQLETVDNQIDVATGTVKLKARFDNAEEALFPNQFVNVRLYV
ETRSGMTAIPNAAVQQGSAGAFVFLAQPDDTVSVRQVKLGAINGDWVAVNEGLQPGDKVVVEGMDRLRAGARIEIVTGTT
PEAAAPVNTGAPRRTP
>SEQF1086_CAE44071.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MASVILYEYPFNERIRAYLRLEYLFDRLFFFAREGDARLHQIAVSSLFDLLDASERTDIKGAVLQDLERQRMALVGLRDH
PGVAQDALEAMLRDMERVVAALAAQGKTGQALRENEWLVSLRGRLAVPGGATQVDMPSYHAWQNKPESVRCADLQSWLAP
LLPLHEGLSMALRLLRESGRRADIAAEQGGYQQMLAGKIYHLLRVWVDPSLGVFPEISANKYMVWIRFSTQDGEVKPQQV
SRDVAFQMSLCSS
>SEQF1086_CAE44072.1 putative dephospho-CoA kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYKIGLTGGIGSGKSRVADMLAEWGASVIDADEISHALTAPGGAAMPAIAREFGPQAVAADGALDRAWMRDLVFREPTAR
GRLEALLHPLIGLHTEQAAAQARGLYLVFVVPLLVESGRWRGRVDRICVVDCDPATQIARVQKRSGLTEPAIRRIMAAQA
ARATRLEAADDVIVNDGATSPDTLRARARTLHDRWLALAGAASQPGGKAAGTPE
>SEQF1086_CAE44073.1 type 4 prepilin-like proteins leader peptide processing enzyme [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQIGARRNNAACGIALPPGPGGPSGPVRAGCPALPLLVLPFRVPPGAMWHVFPLDPALNVVLAALLGLVAGSWLSVVAHR
LPRMMEREWRTAMREEDGGAESGYGLWRPAWHCPSCQAALRGWRAVPLAGWLLQRGRCGHCGQPIGLRYPMLELAAAVLF
AACAWRFGPTPMALAAMGLTGALLALAWIDLEHSLLPDAVTLPLIWAGLLVNLDGALAPLPLAVLGAVAGYLFLWVIFHF
FRLLTGRDGMGHGDFKLMAALGAWLGLGALPWLLLGASLAGVLVGWSLRLAGRVGRGQPLPFGPYLALGGILMLLAAGRP
AWLQFY
>SEQF1086_CAE44074.1 hypothetical protein BP3819 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAPLDTPALRLNTRFATGIVLAGTLALAGCAQQRSAGYYDPPGASTITDAQYQGQAAGYRTVVHAPSQLQIELKPNQPA
RQQNAQAQAGQQSTEDGTAVPEGQAAPQPQPETASPGAQAIIPQAQTYQGTFPCFAAGLACEAQRVTLTLAPNGRWRSRT
NYLDKQPQASAPVAEQGCWDATQERPPRVLLLDGSGNMRAELVMTANNVLRVRSVGGRTPNLNYNLTRQPDLDAIAELDK
QAAPKCP
>SEQF1086_CAE44075.1 putative regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLPTPGNASSAQPALPVVSICHPIAPSVGGRAEARPPAALTARERQVAAYLAAGKANKVIAIDLGISRRTAEAHRARIFR
KLGVRNAFELACRMCPHRRAATSMAGQGATPAGES
>SEQF1086_CAE44076.1 pantoate--beta-alanine ligase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKVVHTIQDLRDHLRGQNRVAFVPTMGNLHEGHLALMKLARQHGDPVVTSIFVNRLQFGPNEDFDRYPRTLPDDVAKMER
DRDVYLVFAPDEREMYPEPQNYRVLPPDDLGDILEGEFRPGFFTGVCTVVMKLLACVQPRVAVFGKKDYQQLMVVRNMCR
QLQLPVEILAHETVRADDGLALSSRNRYLSEAERAEAPVLYETLRGIAQRRAGGEQDPAALERVAAQALADRGWKVDYVA
VRRQRDLKAPDVAEMSAGEPLVALAAAKLGATRLIDNLEF
>SEQF1086_CAE44077.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAHNASISGDDLAALVEPQVDSTPDVVDSVAFARLYGEPLFQLPTDLYIPPDALEVFLEAFEGPLDLLLYLIRKQNFNVL
DIPMADVTRQYLSYVEQIRVHNLELAAEYLLMAAMLIEIKSRMLLPVKKSDTGEEPEDPRAELVRRLLEYEQMKLAAQKL
DALPQLGRDFVRSQAVAEISVERMLPEVSVDDLRAAWADIMKRARLNQHHHITREQLSVRDHMTHILRRLNDVRFMEFGE
LFLERINEGAPVAVVVVHFIAMLELARESLLDITQAEPYAPIYVRLAYASVAAAA
>SEQF1086_CAE44078.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAKNYESEITRFLKEYKTAHPDTEQRQREGRARLWDKAQNTELLEGFRAARVPQKPYVYQAD
>SEQF1086_CAE44079.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSADPATAAAPPPLANPDAARAARMIPFIVGCALFMQMLDSTVVATALPAMAAALGSTPVRLNVAITSYLLAVAVFVPIS
GWAADRFGARRVLIAAITLFTLSSVGCALSQNLGQLVVARIVQGMAGAMMVPVGRIILLRTVPKQDLLKAMSFLSIPALL
GPVIGPPVGGFMVTYMSWHWIFLINIPIGILGIALVLRFVSEIREENAPRLDLPGFLLSGICLAALVSAFEALGHGLLPP
LELGALIAAGLLCGVLYVWHSRRVEHPILDLSLLRTPTFAISVLGDNLCRFAVGAVPFLLAMLLQVGFGLSPFAAGMITF
ASAAGALLMKFVATPIVTRYGFRRVLTINAILTGLFIVACAAFTPVTPAWAMIAVLLAGGFFRSLQFTAVNTLTYADIGP
ERMSRASSFAAMAQQLGISLGVGVAAVTLNVSMAARGAASLTIGDVVVGFMVVGALCMLSVLSFRRLAPSAGAQLQNVKV
PRDGK
>SEQF1086_CAE44080.1 glycerol kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTANEFILALDQGTTSSRAIVFDRAGTVRGMGQREFRQHYPRPGWVEHDAGEIWQSQLEVAREALRNAGASAADLAALGI
TNQRETTLIWERATGRPLARAIVWQDRRTAAMCEKLLHDGHGRMLQERTGLVVDAYFSGTKLAWLLDHVPGARKMAERGE
LAFGTMDTWLVWQLTGGAVHSTDPSNASRTMLFDLHAQDWSDDILALLNIPRGILPRIAPSSARIGETLPEWLGGSIPIA
GVAGDQQAATFGQACFTPGMAKNTYGTGCFMLMNVGDAPVASRHNLLSTVGWSLPAGNATHATYMVEGGVFMAGAAVQWL
RDGLGIIQRSADIEALAASVADTDDVFMVPAFAGLGAPHWDPYARGTLVGMTRGTTRAHIARATLESIALQSAELLSCMN
ADSGIPLSELRVDGSAARNDLLMQMQADLLGVPVVRPRVPESTALGAAGLAGLAVGFWSSLDEFGAQWQAERTFEPAWPA
DVREARMQRWRQAVELSKGWSRPAAGHA
>SEQF1086_CAE44081.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPEGRPGARGPRPSYPMLYSWIKIVHVAAMAAWTLGLLVLSSVTAFPARQGQGPGRFAQRLARCNRWLISPAMLLGVGCG
LYLASMAGWFGQPWLDVKLALVGLLVVLHGAQSLVLRRQLASPAAGAPAWLAAGGAAVFFASAAIVLLAVVKPSL
>SEQF1086_CAE44082.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRSHSFVSVTRRALLGGALAVAAGLSWTAPAVAQGDAFPAKPLRFVVPYPPGGPLDSMARLLAEKVRESLGQPIIVENR
SGAGGNIGADLVAKAAPDGYTLVMGAVATHAINPWLFANLPYDPVKDFAPVTIVASVPNVLVMNLEFAEKNNIQNLGDLL
AYAKKNPGRLNYGSGGNGSAGHLSGELLKARAGIAAEHIPYQGAAPAQLALLSGQSDFMFDNLAAAAPLIKDGKVKALAV
TTAKRSSLLADVPTVEEAGVKGFDLGTWFGVFTTGGTPADVVAKLNKAYADAMRLPDVRQRLLTMGSEAEPMTADAFAAF
VKQEMAKYQEIVKISGASLN
>SEQF1086_CAE44083.1 putative amino acid ABC transporter ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDAIIRMQDVNKWYGQFHVLRNINLDVAPGERIVVCGPSGSGKSTMIRCINRLEEHQQGHIIVDGTELTNDLKHIEAIR
RDVGMVFQHFNLFPHLTVLENLTLGPTWVLKKSRAEAEATAMKYLERVRIPEQATKYPGQLSGGQQQRVAIARSLCMNPK
IMLFDEPTSALDPEMVKEVLDVMVRLAQESGMTMLCVTHEMGFARKVANRVIFMDRGEIIEQNTPDEFFDNPQNERTKLF
LSQILH
>SEQF1086_CAE44084.1 putative amino acid ABC transporter permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSATHTPGEALPPPSGHVGVWHWLRTRLFSSPLSILATVLLAWLVLMAVPALVEWALIGANFTATSAQECRQSEGACWA
FIVEKHRLILFGTYPYDEQWRPLLATIILIAVIVCSGMRRFWKPSLALVWIVGLSAVAVLMWGGVLGLTYVENARWGGLP
LTLILATFGIALAFPFGVLLALGRRSRMPAIKALCVVYIELIRGVPLISLLFMSSVMLPLFLPEGFSIDKLLRAQIAIIM
FAAAYIAETVRGGLQAIPKGQYEGADSLGLTYWQQMRKVILPQALKIVIPPLVSIFIALFKDTSLVVIIGIFDLTLAAKA
ALSDAAWRGFGVEAYVFIALIYFVFCFSMSKYSQALEHRLATGHQR
>SEQF1086_CAE44085.1 putative amino acid ABC transporter permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTTNRNAPIPAPRRRLNWNDPGLRAVVYQFVALVVVALVAWFLVSNTLHNLSVRNIATGFGFLDREAGFAIGETPIAYS
PSDTYGRAILVGVLNTLRVAVIGIVLATLLGTLIGIGRLSKNWLVARLTSIYVEVMRNVPLLLQLFFWYALITENMPGPR
QAHNPLPGVFISNRGVRVPSLEGNALDWMLGGLALAIVAIIVLGHWGRKRQEATGRIFPLGRAAIALLIGLPIVGWLASG
ASLALDMPALKGFNFQGGLNMSPEFAALLAGLVIYTSAFVAEVVRSGIQAVNQGQWEAAGSLGLRRAQVLRLVVLPQALR
VIIPPMTSQYLNLTKNSSLAVAIGYPDIVSVVNTTLNQTGQAIEGILIIMGAYLTVSLTISIFMNWYNKRIALVER
>SEQF1086_CAE44086.1 putative ABC transporter periplasmic amino acid-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKMLKLAAAGAALFAAGSVAHAGATFDNVKKKGFVQCGVSTGIPGFSIADSKGEWKGLDVDMCRAIAATMFGDASKFKVT
PLNTQQRFTALQSGEVDVLTRNTTVTLTRDTTLGLIGVGVNYYDSQGVMVSKELGVKSAKELNGATVCVQPGTTTELNLA
DWFRGNKIEFKPVVIDKYDEIVRAFSAGRCDAFTTDKSQLASTRTTLEKPDNYVILPEDFSKEPLGPMVRQGDEQWFNVV
RWSLNAMLEAEEYGITSKNVDEMAKSSNPNIQRILGVTPGMGKNLGVDDKWAFNIIKQVGNYGESFEATLGKSSAMKLER
GLNASYKQGGLMYGWPVR
>SEQF1086_CAE44087.1 cell division ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIEFQHVFKSYGRGRNILADINFRISAGEFVFVSGPSGAGKSTLLKLIGGLEPPSRGSIQVNNQRLDRLPSRARPYLRRA
VGVILQDTHLLYDRSAFQNVMLPLAVTGQAPDSAAARARAALDKVGLAGKEDLNPIELSGGEQQRLAIARAIVNRPAILI
ADEPTANLDHDNAQRIMNVFRDFNRVGVTTLIASHDQDLMARYATRTLSIEHGRFHDTHGGQA
>SEQF1086_CAE44088.1 putative permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKAWLRQHRYALAITLRRLAAQPFSSLANLLVMALALALPLLGSAILVSVQPLARQVSVTPELTVFMQTQAPATAAGAVA
ERIGRDYASQIAAVRVVPRDQALAALRDNPAWEQALAVLPGNPLPDAVVVTLADGENLAGRAGALAQDWGKWDGVDQVQL
DSAWVQRLEALLRFARIGLAFLAACVAVVVLATVFNTVRMQAMTQREEIAVARLVGATESFVRRPFLYQGALTGAVSALI
AIGAAAMALTPLNDALLGLARSYGAEFALHLPGLPVLAVAVIAAGVLGALSARWSVTRSTRF
>SEQF1086_CAE44089.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPARLDARATRRYFDNAFNSPAVKILPNEYYVTNGEDVMLSTVLGSCVAACIHDPVIGVGGMNHFMLPEGDIHSPASATM
RYGAFAMEVLINELLKAGAVRERLEAKVFGGGAVLSAMQLMNIGERNGQFVLNYLKTEGIPVRAQDLGDVHARRINYFPR
DGRVMVRKMAPHHQKAEALIAQREAAAAQTVQAETRAAPRVERFDTPSRRDPVGA
>SEQF1086_CAE44091.1 putative A/G-specific adenine glycosylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAPMDFASRITAWQARHGRHDLPWQNTRDPYRIWLSEIMLQQTQVATVIPYYQRFLERFPDVAALAAARQEDVMPYWAGL
GYYARARNLHRCAQEIMQRCVGRFPPRAEEIATLPGIGRSTAAAIAAFAYGERSPIMDGNVKRVFTRHFGIEGDPARRAV
EQQLWALAAAQVQAAPDLDMPGYTQGLMDLGATLCTRGKPACERCPVAQSCIARRDGRQAELPTPKARKAIPERSTAMLV
LHGPDGILLHLRPAPGIWGGLWSLPECDPAHDPGAAARELGLQAEAPVELAAFAHTFTHYRLHVRPWYLAVRGAALRQAA
TPERWVSPAELPATALPAPVRKLLDGLLAALPAPPRQA
>SEQF1086_CAE44092.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNSATHLAAHEGSARRRQALGEFVRTARARITPQMAGLPAGSRRRTPGLRREEVAQLSDISVTWYTWIEQGREVTVSPAV
WARIANVLHLARAERAYLFELAECADPQQPRDEGGDAPVSLQACVDAIDAPAYALDRAWNLLASNAAMRELFDDWPLRDA
QPNLLRYIFLDPAARELVVDWDQRARRVVAEFRADAGAHLDEADVVALLDELNRASPVFAHWWTRHAVVEREGGLREFQH
PRSGRQNLQQITFRLATHPELKLVMLLPS
>SEQF1086_CAE44093.1 ubiE/COQ5 methyltransferase family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSATPTHDAAVERQFSPRASAYLTSAVHAQGEDLLQMAAIAREHPGARLLDLGTGGGHVSFHVAPHVAEVVAYDLSQSML
DVVAGEAARRGLANLRTCRGKAEALPFGDGEFDLVMSRYSTHHWEDPGQALREACRVLKPGGIAVFADVVSPGEALLDTW
LQTIEVLRDTSHVRDYSAAEWLRMAAEAGLVTQGMTARRLPLEFTSWVERMRTPPELVTALRAMTDIAPAPVRRHFAIQP
DGSFTSDTLTLVAVRPA
>SEQF1086_CAE44094.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
>SEQF1086_CAE44096.1 CAIB/BAIF family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSADLPLQGITVVELSDNASLPFGGQVLAGLGAEVWKVERPGGDASRGWGPSMWRGSGAAFHALNRGKKSICVDVKDPAQ
LDMLKDLIFSHADVFAHNLRPGSAGQYGLDPETLRARKPELICCELGAFGHVGPLSRDPDYDPLMQAFSGIMSLTGENGQ
PPSRSGVSIVDFGSGMWSVIGVISALYRRRRTGQGATVNASLLETAMAWMSVGIANYATDGEIGSRYDSGIAFIVPHRAY
ETMDGYLIVSCANDRLFGKLSVALDHPEWAVDPRFATNAGRLAHRGEIDGLIGECLARNTREYWKAQLEKFGVASAPIQT
TAEIFEHEQTRALGILGRPTADEIECVGVPISFDGVRPAPLGAAPDVGQFNDEFHALLKSARVS
>SEQF1086_CAE44097.1 hypothetical protein BP3842 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNKNTVPDASGVFAKFATQTRFEDFPAKVIANTKRSIFDTVGVMLAGGGPDAQAHRIAQMLAAWGGAPTGTVIGHDMKLP
APNAAFANAAMAHQYDFDDVHDEAVAHPTNSSFSGTLAAAQEMPGATGRKLLASVLVGNEVVCRVGLAIKGALYDYVWIW
PAVVAIWGATTASARVMGLTADQLQSAYGLTLHQTGTTLQCHHGPGSDVRGFRDGFGARNGVTAAYMARAGLRGDPEAFE
GKYGFYGAFFRGEYDRERLLAGLGQHYAAERISIKAWASARETHATLQALLELRERHGIDPAAIERVVMRVGETNMRFCE
PGAARRRPTVRMDALCALPFCASVALIHGGVPLGAFSENGMRDERVLALAERIAWQADEALSHGTVEGGDVEISLRNGQT
FRHQVRHGMGHPDFPVSDELLVRKFIDCAALATCSVSESQVREFWEMVQKLEDISVAEFSAALRAFSRGN
>SEQF1086_CAE44098.1 putative lipoprotein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVSRRVLLQAAAAAACMGWKPAFSASWPARSVRLVSPTSVGTTTDTVARFVADGLSKRLKAAFMVEPRPGAGGIIASSEV
ARSRADGYTVLFGAIGHYLAQYLTDNPPVYDPVKDFAPIARVGFASVAIVVRSDSPYKTLADLIEAMRAQPKRITFSSFG
LGSAGHLCGVLLNDATGTRGMHVAYKGTGAAVIDVASGLIDFTCQSAASVLPLIDSGQLRALAVASRSRWPQLPDVPTAI
EAGVPDFVAGSWMGALVRADTPPDIVQRLSDAMVGIARSPEFTALCAKQMIDVEIVDHAQWAADADNENARWQRVAALVK
QG
>SEQF1086_CAE44099.1 putative enoyl-CoA hydratase/isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAPALIVDDSLPGVRRLTLNRPERMNAFDGGLLMDLRRAIDACRDAQPEVRVIVIRGAGRAFCAGNDLKWLAQGVIGDLG
AHLRHQDLMQSTFEALEAAPQAVIACINGYALAGGLELALSCDIVIADESAELGDEHIRRNLLPGGGGSQRLPRKLGLPR
ALLYLLTGRRMTGREAQQMGLVSMAVPAGELESVTMEFASELARVDPHALASMKFAVRRGMELPLKEALWLERWTQYRYR
IASPALENGVAEFGRRPGATLPGDAPNQDERIPE
>SEQF1086_CAE44100.1 nitroreductase family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLASLQAPPVRTVVADPQSVHAAIESRFCCREFLADPVERETLERILRVASWAPSGSNNQPWKVYVVQGASRAALSQKVR
AAQDALSQDPALADSYREPYQYYPVEWVSPYIERRRACGFGLYGVLNIARGDRVRMNEQLLRNFDFFGAPVGIFFTNDEI
LAEGALVDTAMFVQNVMLAARAEGLHTCVQAAWNRFSSVVLPHIGAQGERLVCALALGHADVDAPVNTFRPDRADPASFT
AWLD
>SEQF1086_CAE44101.1 TetR family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPMPDTTSSTEHIESQASEKGRSRGQRGEGKASPETRDRLLRAAAHVFRHKGYVAATLAEIGQLADLRPATILYHFASKE
ALLEEVMTVGLGAPQQEVQRRLASAPRDATAADRLRIAIIGHLSALLMHNDFTAAGVINFHLAPPALRKRHHEKRSAYGD
VWRELLRQAKDEGYLAGDVDLTVLRLFMIGGLNWSHEWYDPKGGRSIEAIGSDIARIVLGQTDTPLPA
>SEQF1086_CAE44102.1 putative hydroxymethylglutaryl-CoA lyase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTVRLEGEMAYPRFVEFHEEGPREGFQSEKTLYPLASRVALVDALTATGLKKIQVASFVNPRMVPAMADAAELFGAIRKK
SGVRHTALWLNAKGIEKAAATAGVDLDGKMMLYASEAFSWSNNGCSAKDQQQRQLEWLAIYDRLNLPLEAVYVATAFGCQ
MQGEVPLQAVLDIVDFVRDLCAEQSRPLPSIFLGDTVGWGNPEEIKRRVNAVRERAPGMRVGLHLHDTRGMGAANFYAAL
QEGVDLFDSSIGGLGGCPFCNHTNMQAAGNICTEDMVQLCHELGIETGIDLDRLIEASRLAEEIIGRTLSGKVMHSDSLD
AQRAALRQAQAGEPA
>SEQF1086_CAE44103.1 putative enoyl-CoA hydratase/isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDALLFSVDDGIATLTINRPAQRNAINIEVNSRLYEAWETIDSRPDIRVVILTSADCGTFCAGMDLKEAARVREETGED
VVRSFKDPFQARMRRVKVPIVAAMTGHLMAGGMMLSLNCDLRVGLAGTKAGITESKVGRGSPWGVPLVWMLPQPVLMELM
LTGNLMPIERLRELGFVNDLGETPDAVRAKALALARAIRDNAPLSVACAKQSILAAMSVGCDAGLEMAWRIHRPAYESED
AEEGPRAFAEGRKPVWLGR
>SEQF1086_CAE44104.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFTHLVDFMSISSHRLLEGIRVLDMTVALAGPYASMLLGGLGAEVIRVEAPGGSDLGRSNPPFVGPGGVNFGQQGSDDVS
LTLLNRARNKKSITLNVKDPEGRALFARLLRESDVFIENLSEGASERLGVDYARVREINDRIIYASIKAFGEPSKYQNLK
GMDILVQALSGLMAVTGEASGPPMRCGVPVADLLAPLYMVNGILAALIYRGRTGKGQKIQVSMLDCLSSWVAEEHFDVLA
QAGFRMRTGNNHERLVPFGTYECVDGHIAIAAVHPDWFASLLDAMGRADLQRDPRFADRGTRMRHAADLAALVSEWTRDK
TVAFVEQALVQERGVPAARVRTPLEMLDDPDLHRSGAITDLQTPDGGTVRGMGLLIGFSECHAQFDVPAQALGQTNASVY
ADILGLSDAEIRRLEEKGVI
>SEQF1086_CAE44106.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE44107.1 catalase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNAMTNKTLTTAAGAPVADNNNTMTAGPRGPALLQDVWFLEKLAHFDRERIPERVVHAKGSGAYGTFTVTHDISRYTRAR
IFAEVGKQTPLFLRFSTVAGERGAADAERDVRGFAIKFYTDEGNWDLVGNNTPVFFIRDPLKFPDFIHTQKRDPKTNLRN
ATAAWDFWSLNPESLHQVTILMSDRGLPQNYRQQHGFGSHTYSFVNDAGERFYVKFHFKSQQGIACYTDGEAAELVGRDR
ESAQRDLFQNIEQGQFPRWTLKVQVMPEAEAATYHINPFDLTKVWPHADYPLIEVGVLELNKNPENYFAEVEQAAFTPAN
VVPGIGFSPDKMLQGRLFSYGDTHRYRLGINHHQIPVNAPRCPFHSFHRDGMGRVDGNGGATLNYEPNSFGEWREAKHAA
EPPLALDGQAADRWNHRVDEDYYSQPGALFRLMNDDQKQQLFGNIGRHMAGVPEEIQRRQLEHFRRADPAYAAGVAKALG
LK
>SEQF1086_CAE44108.1 ABC transporter permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTNATLPLAIARPEYEQSLAPLPADIAIQAPLPWHERLLGHAWLRKVLILLLLALAWEAMARYTDNDLLLPGAWQTARAF
FQELGSGQLPARAALSFSVLFKGYAAGVALAFVLTTLAVSTRFGRDLLSTLTAMFNPLPAIALLPLAMLWFGLGQGSLVF
VLIHSVLWAMAVNMYSGFLTVSETLRMAGRNYGLTGLRYVLGILVPAALPSILSGLRIAWAFAWRTLIAAELVFGASSGK
GGLGWYIFQNRNELYTDRVFAGLAAVVLIGLAVENLVFDTLERVTVRRWGMQR
>SEQF1086_CAE44109.1 ABC transporter ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGAHRFDSSAEPLLRADGVTLEYKTPRRRVRATHRVSFDMLPADRFILLGPSGCGKSTLLKAAAGFLAPSEGQFLLDGRP
IDAPGPDRVVVFQEFDQLPPWKTVRENVAFGLVAARRLPRAQALERATHYLEKVGLGAFADAYPHTLSGGMKQRVAIARA
LAMQPRILLMDEPFAALDALTRRRMQEELLGLWEDASFTLLFVTHSIEEALVLGNRILLLSPHPGRVRAELNAQQFGLHS
MGSAAFQAAAARIHGLLFDVEPQAVPQRAAA
>SEQF1086_CAE44110.1 putative periplasmic protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRSHETVRQRLARYVSASLLGAFIAVLALASPTPALAEGRIRIAEQYGIVYLLLNVARDQQLIEKHGRQAGVDIDVQWTR
LSGGAAVNDALLSGAIDIAGAGVGPLLTIWDRTLGRQNVRGVASLGNFPYYLVSNNPRVKTIADFTDKDRIALPAVGVSV
QARVLQLASAKLWDDEHYNRLDAISVALPHPDAAAAIISGGTEITGHFGNPPFQEQELAGNANARIVLKSYDVLGGPGSS
TVLFATEKFRRENPKTYAAFQVALQEAAQFASAHPEQAADIYIRLAGAKIDRDFLIRIISNPEVQFKVAPQNTYALAAFM
HKVGAIKNKPQSWRDYFFDDAATAQGS
>SEQF1086_CAE44111.1 putative taurine catabolism dioxygenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSHANALRQPSIAFPPDVLAHGPSQDFTVRPLNDALGAEIVGIDLARALSAADFARVRRAHLDHHLVVFRDQRITPRQHI
DFSRRFGRLMIHVLHQFHLAHNPEILVVSNIVENGAPVGLGDAGKYWHSDISYKPLPSLGSLLHAQELPAIGGDTLFANM
HRAYETLPRALREAVDGRRAVHSYLAKYGQLQKEGNWRPTLSAAQLAQVQEVAHPVVRTHPETGRRALFVSEGFTTRIEG
VAADESRQILDELFAHSTRSEHIYRHQWRDHDLVFWDNRSLIHLAAGCPPELRRKLYRTTIEGDAPF
>SEQF1086_CAE44112.1 putative hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKTIEAIERAHADLTALRRDIHAHPELAFNETRTSALVAEKLREWGLEVHTGLGKTGVVGVLRAGSGGKRIGLRADMDAL
PMPEHNRFAHRSTIEGRMHGCGHDGHTAMLLGAAQYLAAHRDFDGTVHFIFQPAEEGGNAGARAMMEDGLFDRFPCDAVF
GMHNMPGMPANTFGFRAGPAMASSNRWDIVINGVGGHAAQPHRSIDPIVIAAEMVQSLQTVISRSKDPLDSAVLSITQIH
AGDAYNVIPGSAVLRGTVRTYTVAALDRIEEDMRRIATTLPQVYGATGDLDFVRAYPPLVNWEAETAFAAQVAEQSFGSG
QVDRDIPPFMGAEDFSFFLEKVPGCYLFLGNGDGDHRLETYHGMGPCQLHNSNYDFNDALLPVGASYWVKLVQAYLPSA
>SEQF1086_CAE44113.1 putative transport ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMDAPVLALRNLEMRFVQSVDLAGRIANLFGAGLRTQVVHAVADVDLDVAPGEVLGIVGESGCGKSTLGRIAAGILRPSG
GTIAWRGAPVAQMGASQRRAYELGVQMIFQDPYASLNPRMRVRDIIGEAPVAHGMVLSRDKAEYVAGLMRQVGLDPAYAQ
RYPHQFLGGQRQRIGIARALALKPAVIVCDEAVAALDVSIQAQVINLFAQLRQDLGLTYLFISHNLSVVSHISDRVAIMY
LGRVVELAPTIQVFEHANHPYTQALLAELPTLRVQRRQYRPIKGELPSPLAPPPGCAFHPRCPHAMPRCSVERPLLREIA
PGHTSACHLNDIAAAQQA
>SEQF1086_CAE44114.1 putative transport system ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQASLSSPPESATRPVLEVKGLKTQFATRAGVVKAVDGVDMYLRHGEILGLVGESGSGKSITGFSLIGLLDEPGRVVEGE
IRFDGEGLRQAAPARWRALRGDAMAMIFQDPMMTLNPVLRVDTQMVETVLAHRRVSRGEAYQRALQVLTMVGIPAPRERL
RAYPHQLSGGMRQRVAIAIALLNSPRLIIADEPTTALDVTIQGQILYEMRKLCEETGTALIWITHDLAVVAGLADRVAVM
YAGRIVETGSAADVIEHAMHPYTHGLIASIPTPDTRGKPLDQIPGMTPSLLNLPAGCAFRTRCPRASQACLQAPEPVEVR
PAHWVRCWHAGEA
>SEQF1086_CAE44115.1 putative transport system permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTVPVQLSPVPAPVGEEAPLRRFLRDFCASKLALLGLALLLVVVGAAVFAPWIAPQNPYDIGGLDILDSKLPPGSEAGDG
SMRYWLGTDGLARDVLSAIIYGMRTSLIVGTVSVLAAFAIGATVGLIAAYFGGRIDALLMRIVDIQLSFPAILVALILLA
ILGKGVDKVIIALVVVQWAYFARAARGAALVERGKEYVEAARCLSLGWGRVLLRHVLPNCMPPLIVIATIDLAHAIALEA
TLSFLGVGVPVTEPSLGMLIANGFEYLLSGHYWISFFPGIALAIAIIAINLVGDHLRDVLNPRNAG
>SEQF1086_CAE44116.1 putative transport system permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLATIIRRLLQTVVVMLVMSALVFAGIYMVGDPVSMLASPEATEAQRTAIRVSLGLNQPLWKQYLIFMGQAVRGDFGNSF
LTGEPAMRLILERMLATLELACVAMLLSVLIGVPLGIRAGLKPKAPASRVIMTGSVLGFSLPNFWVGLMLIMIFAVTLGW
LPASGRGQTVSVAGLSLSVLTLDGWASLILPAATIALAKCAMIIRVTRAATRESLPQDYIKFARAKGLPEKRVLGVHLLK
NILIPIVTVAGLEFGQVVEFAVVTETVFSWPGMGKLLIDSIINLDRPVVVAYLLLIVFFLVMLNLVVNIIYTVLDPRVRL
DSRQ
>SEQF1086_CAE44117.1 putative extracellular solute-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MISRLSRVVTCGSVIVALALGGASAALARDLVVALKTEPSSMDPQYHALTPNTQISQTIFDPIVRVDEQLKPQPALAESW
TVDGKVWTFKLRPDVKFSDGTPFTAEDVVFTYDRIPKVPNSPSPFTLYLGAVAKTEAVDPLTVRITTKDVTPLLLVNLAQ
LPIMSKKAASGPAPEGKTTTELNSGNGLIGTGPYKFVSWKRGAEFVLARNENYWGKPPAWDKVTYRPMTNAAARVAALLA
GDVDMIEDPPTDDLPKLKADKKLYVEETPSVRVVYLALDQYAEPSPGVQGTDKNPMKDKRVREALSLALNRDAIVDRVMG
GVAKPAGNLLPYPMFGSSKEHSQAPKADVEKAKALLKEAGYPNGFSITLGSPSGRYVNDAKVAQAIASMWTRIGVKTSVD
SMAPPVFFKNRDSYAFSAYLAGWSVTSGEMSNALTSLLVTRNPEAGLGTTNRSRYSNPAMDELVKQASSTMDDAKRAELL
QKASNLAMDDYAMLPVHFELSVWAMKNDIRYTGRPDQTTLVQYATVKK
>SEQF1086_CAE44118.1 putative tRNA modification GTPase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLYAPIAAIATAPGRGGIGVVRISGPDLAELAQRLFGRPLTPRHAHYLPFRAADGEVIDEGLAIYFRAPHSYTGEDVLE
LQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEAVADLIDASSEAAARGAMASLSGEFSQRVN
DLSDRIIHLRMLVEATLDFPEEEIDFLEKYQARPTLQALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALA
GDDIAIVTPIAGTTRDKVVQEIHIDGVPLHIVDTAGLRDTDDAVESIGIERTWKEIERADLILHLQDVTQPPDHLDAQIV
RRLPARTPVLNVFNKVDLLDAAFQGQPDSLAISARGGIGLDALRQHLLQLAGWNPGAESPWLARERHLHALQQAAQHLEI
ATEHAREDDRVLDLFAEELRLAHEALTGITGKFTSDDLLGEIFSSFCIGK
>SEQF1086_CAE44119.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLAASFVMAIYGWGMGFYGPPVFLHAVVERTGWPLQWVAGMVTLHFVEGALAVANLRRLYRLAGIPMVTFCGALGSALGT
FGWAVAATPWQLAIAALVSGASWAALGAAAINALIEPWFVVRRPAALGMAYNGASVGGIVFSPLWALLIQAWGFAWAAGV
VGASMVLVIAVLASLVFTRTPANTGQAPDGEAVAPRPAANPAPPARPAGRLREDRRFVTLAAAMSLGLFAQMGLVAHLYS
LLVPTLGPGTAGLAMGAATGCAIAGRTIVGRIAGAGSDRRLLASHAYAIQALGALLLLAAGDTPALVWLGLLLFGSGIGN
ATSLPPLIAQNEFDPASVRRVVPLIVALSQAAYAFAPAVFGMLRGVSDAASAPWLFVAAAALQAAAIACLLAGRATCRCR
NSKRSRPASRRW
>SEQF1086_CAE44120.1 putative response regulator protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRILLIEDEAELARWLSRSLARHAGFVVEWADDGLLAERRLAVEEFDAIILDLGLPGMDGHTLLTRIRARDDRTPVLVLT
ARDSLAERVGTLHQGADDFLPKPFVLEELEARLTALIRRSRGREHPRLTLGDLALDTALQRFTVKGQPLALSPREHAVLR
ALIQRSGEPLNKQQILDRIQSSDSDVNLEAIEVLVHRLRKKLADTGVQIVTMRGMGYCLENAVDNP
>SEQF1086_CAE44121.1 putative sensor kinase protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTRRQEKTRHRTLKTVLLWWLIPALVFVMTGALWLSNQQLRNQVDIAYDRSLSGALRSIDHNISTASGGLSLEQPYLML
EFFELTANGNVYYRVATEDGLAEIGNPQLPLPPQPLVSGQPQFFYAEYLGQPVRVAALARPMDPPLYNDKGGRIIVQVAE
SLETRQDFLHRALVRSVERDLAVVMISVLVVIWSVFMALRPLERLREEVASRSADDLSPVSASEMPGEVQPLIHAVNLHM
ARFTALARVQRQFLDDASHQLRTPLSVLRTQTAYALRETDPQEVRTALLAMQDGLDRAVRTTNQMLALARAKDASLAEGG
LPLETVDLAELADGVIRALLPAARARQLDLGLDVQAAPVRVQAVEWLLREALSNLVDNAIRYTARGSEVTVKVHAEGGHA
WLVVEDNGPGMSAEDIARASVRFRRGAAGKNKSGAGLGLAIVRTIIEIHGGQLVLENRQPQPGLRAALVFSLGFKGNAAL
PHEIVVI
>SEQF1086_CAE44122.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHTLAKFRATAAALAGLCALFIGNAAHAAGDEPRRPECIAPAQPGGGFDLTCRLATEGLKQSGALKAPMRIVYMPGGIGA
VAYNNIVAQHPGEAGTIVAFSGGSLLNLAQGKFGKYSVDDVRWLAGIGADYGVAVIRNDSPYTDLKGLMEAFKQDPTKIV
LGAGGTVGSQDWMKAALTAKAAGVDFKKMRFVAFEGGGEAVTALRGGYIQAYMGDAAEAFTMLEGGAPIRVLAVFNSERL
PGKLNNVPTAKEQGYDIVWPIIRGFYVGPKVSDKDYQFWVDAFDKTMTSPEYAKLREQQGLFPFSKTGKDLDDYVKQQVK
NYAELADSFGLIKK
>SEQF1086_CAE44123.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRTQSGRSAPCSRIGYGIMNDRMLGVFALILAAFMTWAGWDIEAPFAYEPVGPRAFPMLVALIIGLCGLRLVYKGSHQVE
TNSAGANARIALMIAYAAAYAFLFQWLGFVIATALMTVAVGRLFGGNWIKCAIGGLIMGVLFFLLFDKVLDVVLPAGLLE
GLL
>SEQF1086_CAE44124.1 putative membrane protein. Also similar to BP3051, 42.886% identity (43.776% ungapped) in 492 aa overlap [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGILDHLAIGFGVAFSLTNVLVAAIGSFFGTMVGVLPGLGPINGVAMLIPIAFAMNLPPEMALILLAAVYVGAEYGGRI
TSILLNVPGEASAIMTTLDGYPLARQGLANVALSLSAWSAFFGAIVSVTGIILLAPLLAKWALAFGPAEYFVLMVFAFCC
LTSLLGKQPVKGVLAAMIGLGISVVGVDSNSGVYRYTFDSVHLSDGIDFVVVVIALFAVSEMLEMLEKVVAGHSIEVKPS
GRKLFNLKELSFTWWSVVRSSLVGFGVGVLPGAGASVAAAVAYSQEKRIIESKDPDAKFGKGDMRGLVAPESAATASAIG
SFVPMLTLGVPGSGTTAVMMGALTLYNITPGPVLFDSKPELVWGLIASLFIANVLLFIMNVPMVRVFSKVLAVPAWMMVP
GILCISYIGVYAINAGTFDLLMVVAIGALGYFLRKFGVPMAPLVLGVVLGDMMEQNLRRALSITNGDPVVLYSSPVSIGL
WIAAAAVVIVPQLMRRLSARRRQAAQS
>SEQF1086_CAE44125.1 probable aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIRSKLPDVGTTIFTVMSRLAIEHKAINLGQGFPDFDPDPELCVLVGKAMAAGHNQYPYMPGVAPLREAIAAKVKTLYGH
AYDPETEITVTSGATEALMATVLAAVGPGDEVVVIEPCYDSYLPAIRLAGGTAVPVPLRAPTRDDPYYRIDWQRVRDAIG
ARTRLLMLNFPHNPTGAVLDESDLDALESIVRETGVLLLSDEVYEHIVFDGKPHASLSRRPLLAEHAFVISSFGKTYHTT
GWKVGYCCAPRQLSAELRKVHQFMVFTVSSPMQFALAEYMANPKPYLDLPAFYQAKRDRLAAGLANTRFRPLPSPGTFFM
LADYSEITKHAEADFARHLTIDHGVTVIPVSAFYQNPAAPESNHHLVRFCFAKQDATLDAAIERLAHV
>SEQF1086_CAE44126.1 putative cold shock-like protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAQKGKVKWFNADKGYGFITPDSGGTDVFAHFSAIQGRGYRSLNEGQEVEFEVKDVPKGPQAAEIRPL
>SEQF1086_CAE44677.1 putative hemin binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRQAMKRLLAWLLAMACAGAAAAAQTAPAQRVVTLGGTVTEIVYALGQGGRLVGDDLSSLYPQAATQLPRIGYYRAVPVE
GVLALEPDLVLASEQAGPPDAIERLKAVGVRVAVVSDQASVQSLHARIRAIAQALDAVPEGERLAAQLDAELARAEALPA
SGARALLLMNRTGTPLGAGRDTAADLLLRLSGLANALAGQEGYKPLSAEALGALAPEVIVVTAASLAASGGLEKLRAQPG
IAATPAAQRQCIVVMDDLLALGTGPRLPQAIRQLKETPCVAGHGAPPAR
>SEQF1086_CAE44678.1 putative hemin transport protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTEPTFATRAAALRQRNDELAASQPGQRARNLAQALGVSEAEWIAAGCNGARVTALRGKPQAIFRDLGELGEVMALTRND
WCVHERHGRYEDIQAEGPVGLVLGPDIDLRVFFNCWASAWAVEQDGHTSLQFFDGAGVAVHKVYRTEATDGAAWEALVAR
YAGEPEWPEPQPYPPAADAAAVDDPAALRRDWLAMQDTHEFFPLLRRLKVGRLAALKAAGADLAQQVPAETVEHMLTQAA
ASGLSIMCFVGNRGMIQIHTGPVEKLRRTGPWYNVLDPRFNLHLNTETVDSAWVVSKPTSDGWVTSLELYTAGGELIVQF
FGERKPGKPELTAWRQLLSGLCGQPLAE
>SEQF1086_CAE44679.1 outer membrane heme receptor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRGALAACALAGTLAAAPAAAQPTAAPASAGARAWHIDAGPLGEALARFADQAGITLLYDPAAVRGRASAGLQGVYSVPD
GLARLLDGSGLDARQRGAGTYVLQALPAGPVAQLAPVTIEADGVRADPAWARTATRRELDARQVLDWSDIGKRVDPGVNY
NRRTKSINIRGLDENRVVTRIDGIRLPWLDDGARGIQGGLNAVDFNTLSRLDVVRGADSSAAGSGALGGLADLRTLEPAD
LLRDGRRFGALAKSDYDSADASWGLNAALAGQVHDDTSWLLQAGTRNGHDLDNRADTGGYGSKRSQPSPEDYAQNNFLLK
LQQRIDGGHRLGLTGEYFKRRADLDQMYQQGAGTSYQYGANRTHEETTRKRVSLDYQYNAPQAGAAIDSARAMVYWQRLR
LDSSQDARRTRDGRAYARPGDPYFYGYPSGPYGRSNSIQESILGVNGELSSRFEGMVSQRVTIGGEWYGNRTEQYSDGYD
NCPAIPPGTPAPMGPRLCDMLHTNQADMPRVKGSQWAIWAQDEIAFADGRYILTPSLRYDHYEQKPQQGGGYQNNPNAGA
LPPSSSGGRFSPKLLGTWKAREALTLYAQYGFGYRAPSATELYTNYGGPGTYLRVGNPSLKPETSKGWELGARLGDDQLG
GAVSLFDNRYQNFIDKNVPLGKGSPQWQPAWDGQYPLGVTGLANRARVRIYGAEASAHWRFAPNWRTWGSLAWAVGKDEN
TGQHLNSVPPLKAILGLGYQRDEWGIDAMLTAATRRDDVQYPEASASARYADFQAPGYGVVDLSAYWRPAAVKGLQLQAG
VFNLFDKKYWEAINVPTAGAIAIPRPLDWYNEPGRSVRVSLTYQY
>SEQF1086_CAE44680.1 heme uptake transmembrane sensor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAREAARWLVRLGSGQASADEIQACDHWRASHAEHERAWQRARRLTSMFDRIPPAVGQAALGRARDRRAMLKSLVALLAA
PPAAWAALRGARNSGWLADLRTGTGETRTVALGPGTQLRLNTGTAVSLDDGSGLLSLRLHRGEIYLEADRPCRVLTRGGM
IRTQAAHLWLRQDDADGLLGVVAGLAFWQGADNRTHSVAAGQRIAWHDGALQGAAQTLDGSPDWLRGVLRADAMRLDRFL
RELSRYRPGTLRCDPRVAGLRLSGVFQLAHTDDILRALPALLPVQLSYVTPYWITVGPRPAGATT
>SEQF1086_CAE44681.1 heme uptake regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPLTSLAPQDAVHALYREHHGWLQSWLRKKLNDAYDAADLAQDTFVRVLRHRAELATLREPRAYLLTIAGRLVVNHYRRR
SLERAYLEALASLPPAHAPSPEQRALILEALDQIDAFLHSLAPKVRQAFLLAQLERLPYADIARRLQVSVRTVQRYIAQG
YEQCILLAP
>SEQF1086_CAE44682.1 hypothetical protein BP0350 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQHARIGQQLLPHFAQRAELRRTIPLFPFTLAELLAPLRRKTTNRPGSDEPALDAR
>SEQF1086_CAE44683.1 putative ferredoxin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPIVVFHKGDETFTDEVKDNTNLVVRAGIKQFPYPNLRYQCGMGKCATCACRILAGGEHLPEPNWKEKKQLGDRLAQGYR
LACQLWITHDIELRQDAAAPAGGGD
>SEQF1086_CAE44684.1 hypothetical protein BP0352 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYVILTNKPGQFHTEAGPEFEVVEEYDYLFYGQRKAIYQIAALRGEAKVAIVEEGPGAVVNHVPSKFLEKFESLQGARDA
LTDLTRFGSMQAELVRRDA
>SEQF1086_CAE44685.1 putative ferredoxin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTMVEITFITNGGKVVTAPENSNLLRVSLKEQGGIPFKCGGGLCGTCKCLIESGLEHTDAIKPKERRHLTPEDFERGYR
MACQTFVNGDIKVSWQKPKPV
>SEQF1086_CAE44686.1 probable ornithine cyclodeaminase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLHIDDAMIEDAVTPQAAQEVLHAAFLDFGRGSAAMQRRVRTEAGGVKLSTLGAVIPGQGVAGAKVYTTIKGQFQFVILL
FSAADGRPLATCDAGTLTRKRTAACTVLAAGALARPRSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPYASPEILER
IGRRCGVPARMAAPADIAAQADIVVTATRSTTPLFAGQALRAGAFVGAIGSSLPHTRELDDEALRRARAVVVEWREQTLS
EAGDLVLAAPDTGLDAKVVELADVLAGRAAARQADEDIVIYKSVGVGLEDVALAGYAYRRLAAQRGWPAP
>SEQF1086_CAE44687.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE44688.1 GntR-family transcription regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAISGPSTYPLDAGHSAPSLKIGEQHMPLFAVIRDKLRERILSGEFTPGDRLIEGRLSDDMGVSRIPVREALRALAAEGL
VTIEPRRGASVAVPSEAIAYDMVEVRATLEGLNAKLAAQRRDDATVTRLRKFLDDGTEAARSDDLQQFLALNSQFHEMLA
TIAGNVVLTDLMRSLRDRTALLFAPSNMRRAKQNWDEHAQILNAVIAGNGELASLLATQHVHNAARAYTEAQQQNQPSAA
>SEQF1086_CAE44689.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPWLAYAPDPWLFAAMAATVFVAAVAQGIGGVGFAMLAAPVAGIFFPQLAPGPLLTLGGFVSLLTALRERAAIDWATVGY
TLVGRFAGTLVAVYALTRFAPQLLSVLFAVSILAAVGISVAGVRISASPAQMSGAGLASGVMGTITSVGAPPLAIMMQHS
PPPRLRATLGLILFIGASFSLTMLSLADRYGVNEFLLSVGLLPFLLLGFSCSSRLKERMRPATVRRILLGICAIGALVVL
ARAALGA
>SEQF1086_CAE44690.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQSDVVLGAAHWVYLLSVVAIILTMVLRANAVVPSVLGTFLVVLAFTGSPIQALVGIFTASFVAAKELFNIFLVITFMTA
LLNALKVLQADVRMVQPLRRVMTNGHASFLILAGCTYGLSLFFWPTPAVPLVCAILLPAAVAAGLPPLAGAMAIAIAGQG
MALSSEYVIGVAPGISAKAAGAAVSAAVVADRALVLSVITGAIALVMTYLFMRKHIVPGDTALLAAWQARAQDGELERIE
GSGSFDKAELARGASQPVKGGAEARLAGWSRAFALITPIAFLGVIALMALPRLVPGLPALRGGDAAALVGGVAFMLMMLA
TLAAEGPRRMLDVCPEHVTDGFVFAFRAMGSVLPIAGFFFIGAAETAAPILGLESGHAPGLLFDLISAAQHLIPENHYLV
AFGVLLVGMVTGIDGSGFAGLPLTGTLSGALGPVVGIDPATLAAVGQMGAVWTGGGTLIAWSSLIAVAGFARVHVLDMVR
ALMLPVLLALSVSTIAAILIWS
>SEQF1086_CAE44691.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDLMSREEFRSALENAIKGKSANASPFSIAWASGQLSREHLARWAENHYHYVGPFADYLAYIYGRTPDTYTEAKDFLLA
NMYEEEIGGDRHTDLLIRFAEACGTTRERVVSPDNMSPTTRGLQSWCYAVAMREDPIVAVAGLVVGLESQVPSIYRKQTP
TLREKYGFTDEEVEFFDLHIVSDEIHGERGYQIVLEHANTPELQQRCLRICEVGAQMRLLYTTALYTDYVQHELSLDKLK
LAA
>SEQF1086_CAE44692.1 probable aldehyde dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEDLRNHEFKNYIGGQWVACAAGKTYPNVNPADTDDIVGRFQASQAEDAAAAVAAAQAAFDGWRNLAVSKRAALMQRAAD
YLEAHAEQFGRELTREEGKALNLAKDEVLRSAQTIRFYAAEGQSFSGETFVNDDPDMVVYSQREPLGVVTVISPWNFPVS
IPARKIAPALITGNTVVFKPSSDAPLSGLRLVEAFEQAGLPPGVLNLVTGSASAIGAAITQASQVRAVSFTGSTAAGEQI
HRSVDMTTRTQMELGGKNPLIVMADADLDRAVDLVVKGGFSLSGQACTGTSRVLVDAPVKAAFTEKLLAKVKALKVGNSL
EGSFDLGPLATARQLESVMRYIEVGKQEARLLCGGERLEGPGYERGYYLTPAVFADVTQQMRIAREEIFGPVIALIEVNG
YEDAIAKANDTEYGLAAAIATTNAQYAHRFARDIQAGTVKINRTTTGNLINAPFGGLKRSSTSTFRESGRIGLEFYTQIK
TVYRAG
>SEQF1086_CAE44693.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKQIYRLELEEARVMIQAAIAKSEEIGVLESICIVDDGGYPIALERMNGARITGPQIAWNKAFTTAGHKRSTHLFNTPPN
GPALPGNEAFGIQWSFEGKFAVFVGGFPIVVDDEVIGGVGLSGGNGEQDTKAGVAALQALADMLAERGMKVMVAADIKK
>SEQF1086_CAE44694.1 CDP-6-deoxy-delta-3,4-glucoseen reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAYRIHLMETGEQFSAEPGESVLDAATRANVRMAHECTFGGCGTCRVKLLEGRVEYEEPPMALSEEEAACGYALVCQARA
CSDLEISVASGPSFAEPRRIAARVAHIAPLCSDVTHLALEVDPDQWPDYRAGQYMNIVLPDGQTRSFSMASDPRHGRLDF
HVRRIAGGRFTDRWLAAAQAGAPLEIEAPLGTFCYHEQDYRPLVMVATGTGLAPIKAMLESLLDDDECPPVSLYWGMRTE
ADLYLRDAIASWQGRLYEFDFVPVLSRPDAGWRGRSGYVQDAVLQDFDDLSEHALYLCGSPTMIAQAKHRFAERGASLDH
LYADSFTFQHPLAAAA
>SEQF1086_CAE44695.1 probable extracellular solute-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMIDPELRPAFLPAGKLRAAINLGNPILAGTDAAGQAVGVSVDLAREFARRLNAGIELRVFDTAGQSVDAVTREEADIGF
FAIDPARGAGIAFTGPYVLIEGAYLVRDDSPLQANEDVDRAGKRVTVGKGSAYDLHLTRALQHAEIVRAASSQAVVDTFL
ARRLDVAAGVKQQLQADARRVGGVRLLPGRFMVIRQAMGLPKARGDAAAACLDAFVESMKGNGFVAQALARHGIQGASVA
PPGRDG
>SEQF1086_CAE44696.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVRCALAGAGLACCVSAMATPIFVLNSLNADVSIIDSQTYAEMRRVPTGKEPHHLYLTPDEQSLMVANAMSDTITLLDPR
TGAVQHTLTGIVDPYHLRFSPDMKWFVTAANRLDHIDIYSWERRTEEFDLKLARRIPAGRTPSHIAIDSGSRVAYVTLQD
SDQLIAIDLGTQAPLWTIPVGKTPADVFVTGDDKILLVALTGDSYVEAYDLTVSPARLVRRIKTGAGAHAFRAQGDGRHL
FVSNRAANTISRIDMQTLEVVDSYPAPGGPDCMDVLADGKMLLVTSRWAGKLTVIDLETKKVSQQVRVGKSPHGVWTLGH
AAAR
>SEQF1086_CAE44697.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQDQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE44699.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPPDPSVLLLYTLYLVAIVAEAMTAALAAGRRDMDWVGVCVIACVTALGGGSLRDVLLGHYPLSWVAHPEYLWMTAGAAL
LTALGARALRRLRSLFLLLDAIGLVAFTIIGCQVAQQMEMPLTIVLVSGMITGCAGGVLRDVLCNDIPLLFRSELYASVS
AVTGGLYLAMYGQGVSASVSVPVALAVGLAFRLLALRFNWQMPKFVYRGDWH
>SEQF1086_CAE44700.1 NADP-specific glutamate dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLQSLDDFLRRVAARDPQQAEFMQAVQEVMLSLWPFIEKHPHYAEHALLERLVEPERVIQFRVCWTDDQGQAQVNRAFR
IQHSSAIGPFKGGMRFHPTVNLSVLKFLAFEQTLKNALTTLPMGGGKGGSDFDPKGKSDAEVMRFCQALMLELHRHLGPD
TDVPAGDIGVGAREVGFMAGMMKKLSNSAASVFTGKGLCFGGSLIRPEATGYGTVYFAQEMLQRAGLSFDGMRVSVSGSG
NVAQYAIEKAMALGAKVVTISDSCGTVIDEAGFTHEKLLALMHIKNDLRGRLDTYASQFGLRYEAGVRPWHVPVDVALPC
ATQNELDENDARTLIRNGVKCVAEGANMPATLDAAKAFIAAEVLYAPGKASNAGGVAVSGLEMSQNSARLPWTREQVNAR
LHAIMRDIHENCVRHGHGAGNYVNYVDGANIAGFVKVADAMRQQGLY
>SEQF1086_CAE44701.1 putative endonuclease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLRITSLNLNGIRSAFRKGLQPWMTAHNADVLCLQEIKVSHDDLTDELRHPPGYTGHFHHAEKKGYSGVGMYLRAGAERV
VAGFDCEEFDAEGRILRADWKDLSVISAYLPSGSSGDERQQTKYRFLDQFGPWLDGLMAEHRKTGREFVICGDWNIAHKE
IDLKNWKGNQKNSGFLPEERAWLTEVFDRRGFVDVFRKLDERADQYTWWSNRGQAWAKNVGWRIDYQIATPGIAERARAT
SIYKDERFSDHAPLTVDYDIAL
>SEQF1086_CAE44702.1 orotate phosphoribosyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSASASTAADFVRFALDEGVLRFGSFKVKSGRISPYFFNAGLFNSGRSVGTLAGFYAQALIDSGVAFDMLFGPAYKGIPL
ATATSVALAGHGAMAGRDVPFAFNRKEAKDHGEGGTLVGAPLTGKVVIIDDVITAGTSVRESVEIIRAAGAEPAAVLIAL
DRMERAGPDDALSPHSAVQDVARTYGIPVVSIASLADIMTLLQDDAQFAEHRAAVQAYRSKYGV
>SEQF1086_CAE44703.1 glutamyl-tRNA(GLN) amidotransferase subunit B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNWEIVIGLETHTQLSTDSKIFSGSSTRFGAAPNTQANAVDLALPGSLPVMNRGAAERAILFGLAVGGKVAPRSVFARKN
YFYPDLPKGYQISQYELPVVEGGTLSFFVGEEEKTVNLTRAHLEEDAGKSLHDEFSLASGAPASGIDLNRAGTPLLEIVT
EPEMRSAAEAVAYARALHSLVVWLGICDGNMQEGSFRCDANVSVRPVGQKEFGTRTEIKNVNSFRFLERAILFEARRQIE
LIEDGGTVVQETRLYDADRDETRSMRSKEDAHDYRYFPDPDLPPLVIGQDWIDAVRAGMPELPAAQRARFEADYGLPAYD
AAQLTVSRAMADYFEAVARALPAGQAKLAANWIMGEVAATLNREEKDIDAAPVSAAALAALINRIIDGTISNKIARDVFA
AMWAGENGGDADAIIEARGLKQISDSGAIGAMIDEVLAANPAIVEEYRAGKQKAFNSLVGQIMKAAKGKANPQQVNELLK
EKLG
>SEQF1086_CAE44704.1 glutamyl-tRNA(GLN) amidotransferase subunit A [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQSALHTEFGGIAALRDALARRQVSAVELAQSGLDAAQAASGLNAFLHIDPDLTLAQARAADAALAAGTAGPLAGIPIA
HKDAFVTRGWRTTAGSKMLAGYASPFDATVVERLAEAGAVSLGKLNCDEFAMGSGNENSAYGPVRNPWDTQAVPGGSSGG
SAAAVAARLVAAATGTDTGGSVRQPAALCGVSGIKPTYGTVSRYGIIAFGSSLDQAGPLAPSSRDLLELLDVMTGFDPRD
ATSLQACDGQANESGRVRRGHDAAQAGYDAAGSQPLKGLRIGVPQEYFGAGLAPDVAAAVEAALAQFEQLGAVRVPVSLP
RTELAIPAYYVIAPAEASSNLARYDGVRYGHRAAQYGDLNEMISRSRAEGFGDEVKRRILIGTYVLSHGYYDAYYLQAQR
LRRLIAQDFQRAFAGQCDVIMGPVSPTVAKNIGDNRDDPTADWLADVYTLGVSLAGLPAMSVPCGFGGQDGRRPVGLQII
GNYFDEGRLLALADRYQQVTDWHQRAPVSQDA
>SEQF1086_CAE44705.1 glutamyl-tRNA(GLN) amidotransferase subunit C [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALNEQDVARIARLARIELTPDQRGRAQAELNGILHLIERLQAVDTQGVEPLAHPLSAHEDITLRLREDAVSEQATEARR
AELLANAPESADGLFLVPKVIE
>SEQF1086_CAE44706.1 rod shape-determining protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFGFLRSYFSSDMAIDLGTANTLIYVRGKGIVLDEPSVVAIRHEGGPNGKKIIQAVGHEAKQMLGRVPGNIEAIRPMKDG
VIADFTVTEQMLKQFIRMVHPRNMLAPSPRIIVCVPCGSTQVERRAIRESALGAGASHVYLIEEPMAAAIGAGLAVSDAS
GSMVVDIGGGTTEVAVISLGGMVYKGSVRVGGDKFDEAIVNYIRRNYGMLIGEPTAELIKKEIGSAFPGSEVREIEVKGR
NLAEGVPRSFTVSSNEILESLTDPLNQIVSAVKIALEQTPPELGADITDKGIALTGGGALLRDLDRLLQEETGLPVVVAD
DPLTCVVRGCGEALEHLEKLGAIFIND
>SEQF1086_CAE44707.1 rod shape-determining protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQRQATPPLFRRGPPAEVRLAVLVILALALLIVDSQLRVLEPVRRAVSVALYPFQRAVMAPRDLVQQVDEWINAASLIRS
ENEALQRQRIELAQVATHAAQLAAENAQLRRLLGVTDTVAQSAVVVEVLYEPPNAFHQRLVFNKGAKSGLAPGMPVIDEG
GVVGQIVRVTPMTAEAALVTDERVSIPVQVLRNGLRLIAFGANIPGVIEVRYLAANADIKVGDTIVTSGVGGLFPAGLPV
AKVASVERDTASGFARALGEPLAHPERYRHFLVLQVDVDQAESNRQEADVDGAD
>SEQF1086_CAE44708.1 rod shape-determining protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MWGTVLLVWLLSLLPWRQWPGSPDVLVLVIAFWCVHEPRRVGLLTAFVFGLLLDVHDAGLLGGHALSYTLTAYGAIALHR
RLQRFDLWSQAMHMLPVFFLAQLVTQIILAWLAGKWPGWQWAVSVGLTVAIWPLAGWVLHMPQRRYDDVESSAV
>SEQF1086_CAE44709.1 penicillin-binding protein 2 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFEFKKTGQQQKQRFRLRAWVGGLFALACFGVLAGRFWYLQVDRYEGFSERADRNRIAVVPIPPRRGEILDRNGEVLARN
YRTYTLEVVPAQAGNLDQLFDRLARVVYISPSDQRRFKRRVGESSRYASLQLRNNLNDTEAAWFSAHSFEFPGVELRARW
VREYPQGEAAAHVVGFIGRIAENDIEELDKAGQLGNYRGTDVIGKKGIEKTWEAALHGRTGLEEVEVTAGGRPMRTLRRI
DPVPGSDIMLSIDLELQKLAEQAFEGRRGALVALDPDTGEVLAFVSQPSFDPNLFVDGIDVENWRRLNESPDHPLINRPL
YGTYPIGSTYKPFVALAALELGKRRATDRMPDPGYFEFGGQKFRNAGGAAYGMTDMHRAIVVSSDTYFYSLGPEIGVNAL
HDFSKQFGFGQITGIDLEGEKAGVLPSTEWKRKAYKDRDRQRWYAGETISVAVGQGYNSFTLLQLAQATSTLANSGLYRR
PHLVHAIRDSRSGSVNPTEIAPDYRIPLKQENVDVIKRAMADVVRAGTARRAFAGAPYQAAGKTGTAQVFSLRGGQYRAS
AIDERLRDHALFMGFAPVEQPRIAVALIVENAGWGASAAAPIARTLFDNWLGRADAPSVVRAGAKPVAAEPEAAALELGA
TDGPMQERRQ
>SEQF1086_CAE44710.1 rod shape-determining protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRLGLILLRVFTAFDWPLLLILILFTLLGLTVMHSAVGSTDWRFAEQSRNFLIAFAAMWAMALVPPNTLMKLALPFYVL
GVILLLGVEFFGETSKGATRWLNLGVTRIQPSEMMKIAVPMMLAWYFQRHDGAVRIRDFFVAAAMLAAPFVLIVLQPDLG
TALLVFGAGFFVIYFAGLSFKLLVPCLLAGIIAIGTLIYYEDQLCEPEVDWVVLHDYQKHRVCTLLNPSSDPLGKGFHTI
QSMIAVGSGGLYGKGYMQGTQTHLDFIPERTTDFIFAVYAEEFGLYGGVALLVLYGLFMARGLAIASRASSQFGRLLAGA
ITMMMFIYVFVNVGMVTGILPVVGVPLPFMSYGGTALLTMGIACGILMSISRRRPAPA
>SEQF1086_CAE44711.1 putative L-lactate dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLSIAQAIAFGQRLLAAQGVPDDIARDVAEHLVESDRVGYTSHGLSILPNYRRVLAEGFVKADGRAKLLNDRGAMLAFD
GDNGFGQHVGKAVMQQAIERARQYGQCIVTLRRTHHLGRMGYYGEMAAEAGLILLAFTNVVNRPPTVAPYGGAQACLTTN
PLCFAGPLPGGCPPFLVDMATSSIAVNKARVLAARGEPAPDGALIDAQGNPTNDPNALFADPPGALLPFGGHKGYAMGLV
AELLAGVLSGGGTIQPEHPRNGVATNNMFAILLDPQVDFNADWRTQEVGAFIDYLHACPPQPGVDRVQYPGEYEAMNRAR
HAEAIEFEGAIWDSLAKLAQDLGAADALPRA
>SEQF1086_CAE44712.1 putative Sodium:sulfate symportert [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTAPAAVPAPQSPPKVKIPIGLIAGIIAMVVVLLLPLPAELPPAGHRMLAILAFAVVVWITEAVSYEASAIMITTLMAFL
LGTAPNVKNPDVLYGTSAAISMALTGFSNSALALVTGALFIAAAMTFTGLDKRIALVTLARVGTSTRRILLGAIAVTIVL
SLVVPSATARSAAVVPIMLGVIAAFGVDKRSNIAAGIMIIVAQATSIWNVGIQTAAAQNLLTVGFMDKMLGERVAWSDWL
IAGVPWSLLMSAVLVFVVLRLLPPESDAIAGGKEAVEASLRELGPMTSAQKRLILVSIMLLLFWSTEGKLHKFDTTSTTY
FGLVLLMLPRFGVMTWKDVQTRIPWGAVIVFGVGISLGTALLTTQAGQWLGAQVVAHTGLDHLGPLGIFAILSAFLILIH
LGFASATALTSAMLPILIAVLQTLPGDFNRLGMTMLLGFVVSYGFILPINAPQNMVALGTETFTAKQFAKVGIVLTIVGY
LLMLLMSVTYWRWLGWM
>SEQF1086_CAE44713.1 putative TetR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MASKPGERKTQILHTLAEMLEQPHAARITTSALAARMQVSEAALYRHFASKAQMFEGLIEFIETSIFTVVNQIAVSEPYG
MGQARKTVAMLLAFAERNRGITRVLTGDALVTEDNRLQERINHINDRIEASLKQCLRVAVSDGALPADANIAAHASLLTH
LVLGRWLRYAQSGWRVAPTTHLEEHLRLALG
>SEQF1086_CAE44714.1 putative hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQARRYLLRPAARLRRSRRIATAAPERLWLFDLDNTLHDTSHAIFPLIDRGMTEAVAETLAVDEATANRLRAEYWRRYGA
TVIGLVRHHGVDADAFLHRSHNFEVAPLVRAETALADKLRRLPGRKVLLTNAPLHYARAVLRHLGLLRQFDSIWAIEQMC
MHGQFRPKPSDALLRYVLAREGVPAARAVLIEDTLDNLRSARRVGLRTVHVFHPGTPFARGHRQRPGYVDLRVNSVSDLL
LRRRPLRG
>SEQF1086_CAE44715.1 acetylglutamate kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDTPDPAAVLSPAVKAAVLSEALPYIRRFHGKTIVVKYGGNAMTEERLQRSFAHDVVLLKLVGLNPVVVHGGGPQIDDA
LRRIGKQGTFVQGMRVTDAETMEVVEWVLGGQVQQDIVMMINEVGGKAVGLTGKDGMLIQATKKLMVNKDDPSQPLDIGL
VGDITRVEPAVVKALQDDQFIPVISPIGYGEDGTAYNINADVVAGKMAEVLGAEKLLMMTNTPGVLDKGGKLLRSLSAQT
IDELFADGTISGGMLPKISSSLDAAKNGVNSVHIVDGRVPHCLLLEILTDQGVGTMISSH
>SEQF1086_CAE44716.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRMNFVRSALLASAFLLAGGAAQAEKLVVGATQVPHAEILEVVKPALAKEGVELDIKVFTDYVQPNLQLADKQLDANFFQ
HQPYLDTFNKDRKTNLVSVGLVHVEPFGGYSKKIKSLAELKDGATIAIPNDPSNSGRALLLLQKQGLLKLKDPSNIVATP
IDIAENPKKLKFRELEAAMLPRSFDDLDLALINTNYALEAGLVPTRDALFIEGADSPYANLVAARPDNKDAPAVKKLVNA
LHSEAVRKFIIEKYKGAVVPAF
>SEQF1086_CAE44717.1 putative thioredoxin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKKIALVLIIAVAAGIGGWFMWRPAQTAPDVAFTTLEGQKITMQDLRGKVVLVKFWATSCVTCVKQMPDNIANYNQYHPQ
GYETIAVAMNYDPPNYVLNFAQTRKLPFPVALDTSGELAQAFGNVRLTPTAFLIDKQGQIIKRYLGEYDKAEFQATVQKA
LAG
>SEQF1086_CAE44718.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMPDAKTAARPLLLAAALSAAALTLSACAPLVIGGAAATTAVVVTDRRTSGVQLEDQNIAFKAESQIAQKLGNTARVNAM
VYGGHVLLTGDAPTEEAKAQATAIAQSIENVKAVTNQLTVGPAADFSTRSNDTWLTSKVKTALINTKYVPSGTISVTTSR
GVVYLMGKVTQAEGDYAANAAAGVGGVARVVKLFETISREEAIRLSGSGTKSGEGSSDGTAAQKAPIESGAAPAGSGSNG
VEAIPIK
>SEQF1086_CAE44719.1 probable phosphosugar isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRAMDMTSRMTSHFRDAMALCEQSADALAAPLAAAVDLLFAALANNGRILACGNGGSAADAQHFIAELVGRFERERLPLA
GIALNTDTSIMTAVGNDYGFDEIFERQVHALGQPGDVLVAISTSGNSPNVVRAMETAREREMHVIALTGKGGGVMGELIT
PHDVHLCVPHDRTMRIQEVHIILLHALCDGIDALLLGDTE
>SEQF1086_CAE44721.1 putative tetrapyrrole methylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNQDVLSPAQGDAWSRVADRVAAQHWPAATLYVIATPIGNLGDLGLRAWQALVRADVIAAEDTRASRTLLDAWGVSTPLM
AAHRHNEASAAQAICERLAQGQRVALVSDAGAPAVSDPGARIVRAVREAGYAVVPVPGPSAVIAALMGSGATSDENPAFA
FAGFLPAKAVARQRWLRQWCALPAPVVMFESPHRLAATLADLREAGGPARLLTVARELTKRFEEIATMPLGEAADWLAAD
AHRGQGEFVLIVHQAPGAQDDEADPADPRTDALLDALLESLSVRDAARVAAKVTGLARDVLYARALARKEQP
>SEQF1086_CAE44722.1 methylated-DNA--protein-cysteine methyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNPPSAQATDILYCDTDTPLGPMRLAARGQALCGAWFVDQRDCPAAAGWTLDAAHPALRQAAAELEQWFAGRRRAFEVAM
QPEGTPFQRQVWQALLELPFGATISYGELARRVGRPKAARAVAGAVGRNPISILIPCHRIIGHDTSLTGFGGGLPRKQAL
LAHEGHRYLSRAARARRVSTTQMELPLGAA
>SEQF1086_CAE44723.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE44725.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIGSDLSSLDQAPLASLSVLMPLVLFTLVNSLTPGPNNVMLASSGLTFGFRRTIPHLLGISVGFSIMLLMVGLGLGATLE
RLPWLYSTLKYGGTAYLLYLAWKIATSGPMESGAERGKPLTFIQAALFQWVNPKAWVMIVSVVATYTPQHGYFANLIIAT
LVCGVVNLPSVGVWAAFGMALRRWLHRPAAVRAFNVGMAVLLVVSLYPVGLDLLALYTG
>SEQF1086_CAE44726.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVSLPFRLSWRRMAAVLLLAAGALGFNQLDAWQRQAIFSPQTDQQRWWREPPAGTEVFDLALPNGDKVHAWYWQSPRRDA
PTVLYLHGARWNLNGSAFRMEGWTRMGYSMLAIDYRGFGQSTPLLPSEQSASQDAAAALQELARRQPDPARRFIYGHSLG
GAIAIDLAARPDLPPFAGLIVESSFTSIGAMLGTMKWGWVPGATLLVTQPFASVDKLAALTTPMLLLHGTADRVVPHTMS
DELYRAAQQVPADLKRLVKIEGASHSGAIRSGRIYEDAVADFVRDAGRGYAGRQGAPTPLTASRPGT
>SEQF1086_CAE44727.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSSSRQTPKTIKERFLHAFFFEIIAIGLSAPVAAWAMDQPLFDMGVLTAVIAWIALLWNMVYNAGFERLERRFGVVRTM
PVRVAHAVGFELGLVLIIVPLAAWWLAISFWEAFMLDIGLLMFYLPYAFFYNLAYDKLRARWWGRIEPAGA
>SEQF1086_CAE44728.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTSERYDEGQQPAHHVGPQRGQAGPFHAGDRDGPMGGGRGASDGNEPGNLSQQAAHVEEVSPLRNQAGDVRCRRIAVCGD
DFGMNEAIDGALIELAGAGRLSAVSCMPLAPAFAADAPALARLDVDLGVHVDFTEAFAGAAPAAPGLAALLWRAYAGQLD
PDWIDARLASQFDAFERAFGRAPDYVDGHQHVHQLPGILPRLRALLKRRYAGQRIWLRHTAPGLQFGLPLAEAAKARLIG
ALGAGALARAAGQEGWQTNRRMLGVYGFTGGPRRYAGLLHHWLMNARDGDLLMCHPGWPQVHGAAHASQRAAEYEVLAHP
ELGTWLARNGLRIVSLSQVRGRQASQESGKVRNVPHFGSFRRLASRL
>SEQF1086_CAE44729.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLATRSMQPHAVSPGQARSWPLPAAGWLLLAVGVWLAFLSWMRPLALPDEGRYAGVAWDMLRNGSFAVPLIDGMPYFHK
PPLYYWLAELSFRLFGVNEWAARLPSALAAWASAVALYLFVRRHRDAASATLCVLVLATLPLFFGGAQYANMDMLVAGMI
TLCVLAGADTALRVRGGQAWRAMALATGVCAALAMLAKGLIGLVLPGAILLAWLAWRRDWRGLRALLWPPAILAFAVVAV
PWFWLMQVRYPGFFQYFFVHQHFERFAQTGFNNVQPFWFYLPVIAGLALPWSLWAGGLLRKQFWAADADPDGLRRLALVW
LAVIVAFFSMPQSKLVGYIMPVLPPLAFLLAEVVMGALRDPAVARATRRMARVSALVAVAICVTAVFVASFNARGSSREL
ALSLRGELRPDDTLVALHTYPFDLQLYAHAARPMWVVDDWSNPEIPKRDNWRRELYDAVQFEPALGERLLVSADTFQQRL
CQAPEGSRYWVWGTAADEEAYAPLRGQAARFADARRSLWLVLVDEAFKGRVCDGTPTGG
>SEQF1086_CAE44730.1 putative glycosyl transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFMYTEFRSQLLAGAGTSAAGQSARMAVLAGDGATGVQVSCVVPGLNEAANLRVLVPALRACLEQWCASWEIIVVDDGST
DDTAELMAQWSAVEGIRYVQLSRNFGKEAALTAGLEAADGDAVICLDADMQHPPELIGDMLAAWRNGADMVYAVRRQRDD
EPWFKRVGARAFYRLLSTARGVEVPPHAGDFRLMDRRVVEALVALPERTRFMKGLYAWVGFKSQAVPYTPQARRHGASHF
SAWKLFRLACDGLTAFTTWPLRLVSLIGVLFALLSLSYGGYLVADYLISGNAVSGWTTIVTALLFFAGINLISLGVVGEY
VARIFDEVKGRPLFIARQRRGRAKRAAKARSQ
>SEQF1086_CAE44733.1 putative sodium/glutamate symport carrier protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MISLTPVQSLLACCLVLVAGRILTTRIGVLSRYSIPDPIVGGLLFAVLATALDTWGGIQISLETNIKPTLLLIFFGCIGL
TADLKLLARGGPRLIAFLLALIPFLVLQNAVGLGLAWLLDMHPLMGLIGGTITLVGGHGTGAAYAARFADINNIQDVMAL
AMTAATIGLVLGGIIGGPVAEWLIRRHKLDPRMAGKDANQVLPEVETTAEAPTATSFITSLTAVFVTVVVGTYLAGLVED
APISLPNFLWCLATGAIIRNFGGYVGIRLDDRVSEIIGSISLSLFLGLTMMTLDLSSVVRLAGPLALMLVAQALVCALYA
GWAVFRMLKRDYEAAVMAAAFCGFAMGATATAIANMQALTRRHGPAPESFIVVPVTGAFLVDILNVIVLTSLIALPFVGG
M
>SEQF1086_CAE44734.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTMFIRWLILSACLLLAACSRAPDTEILQRDVGQTLAATYGPDLFDIVALRRMGSATDSTAPPGQTRRVVYYDVVLGLKK
DLTLGAWDQPGAAALVSLLGAGPRSISGVKSSGNAAGDQIVAHASAIYQRDAEQWVHVAPASFTATEAPSLDTGAPPPVT
RQLLQTLEQITRSVPYSASSTAQHVVQQELERSVARINGRLARLQKGYPLATGPDKGEYLAFGQALAAIGRNEQVRVIPL
ITGGSADNMAMLRSGAAVAALSQADIAQLAYEGKGPFESQGPFSGLRALGSLYPELVHIVVRQGDGIATVGALRGKKIAL
GPSGSAVRTTLETVLAAHGLQPGRDYAVIDTPAAAALPQLSEGRVDAVAQVIGTPAAPLRAALTQARLALLPLDRAAIDK
LVQADPTLMALDIPANTYPSQAAAIPTVGMAALLVTTADLTRDEAAHMVDVVYRAGQDLLAAGSAQGAQVSAANAGRGLS
IPLHDGAVEAFEKLGAPPLPEGR
>SEQF1086_CAE44735.1 putative short-chain fatty acids transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFKLMSRSAVKMVERYLPDPYVFVVLLTLVAAGAAMIIEGQTPMAVVRWWGNGFWGLLTFAMQMLLVLVTGYMLASTPLV
KRMLARLASLATSAGGAIILVSVVSLAASWINWGFGLVVGALFAKQIARQVRVDYRLLVASAYSGFIIWHGGLAGSIPLT
IATEGHFSADKIGIIPTGDTIFAVFNLVIVVAMFILVPLVNRLMLPDEKESVYVDPARLEEASVPASDDDKRPAARLENS
RLLAWLIAAGGLAYMFDYYVVRGAGLNLNVINFSFLILAILLHGTPRRLLASLDEAIKGGAGIVIQFPFYAGIMAIMMDS
GLAATLSEWFVSIASAATLPFWTFISAGIVNIFIPSGGGQWAVQSPIVISAAQALGADMPRVAMAVAWGDAWTNMLQPFW
ALPVLAIAGLKAKDIMGYCIIQLLVTGVIISVGLSFF
>SEQF1086_CAE44736.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHPDTNTMLIIIAAPVALMIVGFGLRDRNLGLGLLGIGLIAALATIAYKAYITFNSFYY
>SEQF1086_CAE44737.1 DNA polymerase III, epsilon chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRQIIFDTETTGLDPAQGHRIVEIGCVEIVNRMVTGNNLHLYLNPDRDSDPEALAVHGLTTEFLADKPRFAEVAEQFLAF
IADAELIAHNAAFDVKFFNAELQRIGRDPLNTHCENIVDSLLHARSLHPGKRNSLDALCDRYGISNAHRTLHGALLDSQL
LAEVWLAMTRGQDALLIDVDDQGANANGALVLGKFDASVLTVLAASEAELAEHAAYLQALDKAVGGACAWRAIEPLPAES
GQPG
>SEQF1086_CAE44739.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
>SEQF1086_CAE44741.1 putative universal stress protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFKKILIPTDGSPLSAQAANAGICFARSTGAEVVALHVTQPFAATIGFDGMAAAYAITDEDYEKASAEQAEKYLKLILDR
AETAGVKAESRAVSNFNVADGIVQAAGEAGCDLIFIGSHGRSGLSRLLLGSVTAKVLSLAHTAVLVYRVKEDKDKK
>SEQF1086_CAE44742.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSAAIKPLTENFAVAPQLGPADMADVAAAGYKSVIINRPDFEGGPDQPTAADVSQAAQALGLQVEYQPVVGSAMTAADVA
RFAELLRTMPGPVLAYCRTGTRCTNLFAAAQQLG
>SEQF1086_CAE44743.1 putative GntR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRQADATLVTQLADDLARRIDEHGLRPGTRLPSIRRMAEQSGVSRFTVVEAYDRLVARGLVQSRHGAGFFVRARSASLTA
LASARVPQAAPETPVRVDVSWLLRNMFRETAAGMPGGAGLLPPEWLDPDMVAAAVRAVGRTVRGNLVSYGSPQGYAPLRQ
QLASMLQADGVPAHPERNLLTTNGVTHGLDIVARHLIKPGDTVLVEDPAWFVIFGRLAAFGARPVGVPRGPDGPDLAMLD
RLAAEHKPRLYIINGAVHNPIGHTLSAGAAYDILRLAERHDFMVVEDDTYADLHPGGAMKLAALDRLERVILVGGFSKML
AASLRVGYIAAGAETLQRLTDLKMLAGLTSPELGERVVHRVLVEGQYQRHIERVRARVNEARLRSIQALQQLGLSVPHEP
HAGMFVWADCGRDSEPVARNAAERGMLLAPGTLFSPSGAPSTMLRFSVAMVDTPGIWQSIAAVMAQ
>SEQF1086_CAE44745.1 putative Mg(2+) transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDTVWMEIWTTVRNEFADIPDVAEATRIVLRLGMAVALGGLLGYERERSGKAAGLRTHMLVALGAALFVLVPLQGGMEVG
DLSRVLQGVIAGIGFLGAGVIIKLGNEGEIRGLTTSAGIWLTAAIGVAAGMGREATALASTLIALFVLAALRRLEKRIAA
RDDKRVVAQPPP
>SEQF1086_CAE44746.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDYLVSLAQQPAAWAALATLIAMEVVLGIDNLIFISILTNKLPPQHQTKARRIGIGMALILRLALLGTVAFIVQLTQPVF
ELFGHGFSWRDVILVAGGLFLVWKATKEIHHHVDPNPGDDMFGGKAATLGFAAAVAQILMLDLVFSIDSIITAVGMTEHI
PIMFVAVIVAVAVMLLAAEPLARFIERNPTVVMLALAFLMMIGMTLIAEGFGAHVPKGYIYAAMAFSALVEGLNMMARRA
REGRGAGAAGG
>SEQF1086_CAE44747.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGPLEGVRILDVTTVLMGPYATQILGDLGADVIKVEPPAGDNVRGIGPGRHADMGGIFLHANRSKRSIALDLKNPAGRE
ALLKVAATCDVLVYNVRPQAMARLGLSYAEVAQANPSILYVGMYGYDQRGPYAARAAYDDLIQGAVGIPSLSVEAGSDIP
RYAPSAMVDRIVGISAANAVTAGLYHRARTGQGQAIDVPMFETMAHLILGDHMMGQTFEPPLGPPGYPRILNADRRPYAT
RNGHICVLLYADKHWKAFFELIGQPGRDAADPRFRDIGTRTQHIHAIYRLVSDDIASRTTEEWLAAFEAADIPAMPVHTM
ASLLRDPHLEAIGFFGMVDHPSEGAVRMMAVPSRWSGTPPQPRGHAPRLGEHSVDVLKEAGYDDEAIAALVRNGAAIAAA
RQLPEGTDHD
>SEQF1086_CAE44748.1 probable enoyl-CoA hydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTDFLRHERHGGVLLLTMDRERTRNALSDADAVEALVQACARIGADLSVRAVVLTGSHGVFSSGGNLKTLSDTVGAGLGE
PVHSLQAYRSGIQRIPLALYNLEVPTIAAVNGPAIGAGCDLACMCDIRLAARQASFAESFVKLGLTPGDGGAWLLPRIVG
MSRACELAFTGRSIDAARARELGLVSEVFDADALLPAALALAQEIAQHSGHALRLTKRLLREGQHTRLDTLLELSAGFQA
LAHHTQEHAGALDAHLSRKRG
>SEQF1086_CAE44749.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHSRTLALALLSVAALAQGGSARAASDYPAHPVKIIVSLPPGSGADTTARFLSKHLAERFKQPFVVENRPGGNSFIAAQA
VATAPPDGYTLFVASNSPMTTNAAVFKNLPYDAVKDFAPVAPIARFPMALVVPANSPYRSVADLVAAARAAPGQLNFASG
TATYQVVLELFHEQNGIKATHVPYKGTSAALADVAGGVVQYSVADVSAALPLIRGGKLRPLAVTSTRRIKDLPDVPTMQE
SGNKGFEAYAWTAAFFPAKVDPAIVARVSDAVQALVRSQEGKAFMEQLGGEPFVGGPDTLAAFQRDELASMRRIAKLANI
QQE
>SEQF1086_CAE44750.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MELRQLKQLLVLSETLNFHRAAERLHMAQPPLSTAIKKLEQELGVQLFERLPAGLQPTPAAEVVLRYARATLFYADEIQR
AAQEGASGKQGMLKVGFVGSSIYSLMPQLLSAFRKDYPRVDLVIEESTTVDLLRRLDAHTLDVALVRFPVLEPSTARITL
LQADHLMLAVPAGSRYAQRDDVALDELADEPFIGYSRTHVPGMHALIMYAFQQYGVVPHIAQEAIQVQTILSLVESGLGL
AIVPKVACRQAGSGVRLVNVPQLAETIKVGIALAVHPDNATPTTANFVDMACRLMQTEPAAGQAR
>SEQF1086_CAE44751.1 probable acyl-CoA dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGTIIEALQLAAIPAHDEALRPAVRAFLDEALREMPADRRARSWMGHDAEFSRALARQGWLGLTLPVEYGGAGRSNFARF
VLSEELLAVGAPVSAHWVADRQTAPLILRFGSPAQRAFYLPRIIRGEAFFAIGMSEPDTGSDLASVRTRATPVADGWLLN
GRKIWTTNAHRSHYMCALVRTSGAPEDRHRGLSQMIFDLALPGIEIRPIRDIAGDAHFCEVLFDNVLLPHDALVGEEGSG
WRQVMAELALERSGPERIYSSMVLLDGWLAHLRCDAAPQRAQVCLAGRLAARLAVLRSMSLAVSQRLEQGADASLAAVLV
KDLGTEFEQAVPELIGQALHASPQPAPDDVLMRTLAYLTLINPTFSLRGGTRHILRGIIARELGLR
>SEQF1086_CAE44752.1 putative acyl-CoA dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVSTMQQDLYETFARALAGLCPLERVRELEAAADPRAGAARAWNEVDALGYGDALSPAEHGGAGLSLADAEGLLRAAGAM
ALPFPFADTLLARALLRAAGQAVPDGPIALGVALPHGAGWRCAPIAGVALAQAVAVEHDGCLALWPAPDAVQPGLFRPRA
SGAPAWRGTPAQAGRAGAPAGAVQAWRNAADAAGMAGAMQAVLDRCVAYVQERQQFGRALGRFQAVQQDISMLAEQVAAV
AMAARLACASGVLFPDPALAACARLRACEAVPVVCALAHAVHGAIGITEELPLGLYTARLHEWRATGMSEDDCAELLGRR
VLADGERTLLDVVRGMVSAAHA
>SEQF1086_CAE44753.1 probable thiolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSVHPDPVVIVAARRTPIGAFQGALAHYSAPQLGAHALAAAVRQAGLQPDAAQEALMGCCLFAGLGQAPARQAVLGAGLP
TDVQATTLSKMCGSGMKAAMLAHDMLRAGSADVVLAGGMESMSNAPHLIPKARQGYRLGDGQLLDHMYRDGLQDAYEGRL
MGHYADLAAREYGFSREQQDAYAHESVLRAQRSVAEGEFAEEIAPIAGLARRGAPAAMVAVDETPGLCDVSRLASLKPVF
NADGTVTAGNASSISDGAAALVLTRQAHAERLGLAPQARIVGHATAALPPGQFPAAPVRAIARLFERVGWDRDSVDLFEI
NEAFAVVTMIALRELGLPAERVNVNGGACALGHPVGATGARLIVTLMHALRRRGLRRGVACLCLGGGEATAIAVERA
>SEQF1086_CAE44755.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE44756.1 probable LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MELRQLRYFVETAHRRSITKAASALHIVQPALTAQIKALEDELGTQLLERSARGVSLTVDGEAVLRDAVAILRAVDDLKR
RHAAAAHSGRAVKIGIPNGMTRTFAGQLIERARQQCSFDIELIEGMSGHLLEWLKSGRLDIAVLFASQPLRQLEVRRLTA
DSIDLVGPPGALDAQRPVAFRDLTGYPLILPNAKHGLTRHIQAQARAQGVELRHHTTLDSIAEIKHLVSQGVVYTLLAPM
VYRLEMEQGLLSATPVCDPALTRELVTATRRSQEAGDDIAQVRALVHEICGARQDPIAAPG
>SEQF1086_CAE44757.1 cold shock protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQTGIVKWFNDEKGFGFIMPENGGPDLFAHYSEIQGEGHKVLVEQQRVSYVPGHGPKGPMATKITPL
>SEQF1086_CAE44758.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRLKKALARVANACLGILPPATTAERPNKAHNRHQPGTHAAILSPWRVYRIYARPGHLLLRNDQGRIYDLGIMKGVEPH
LTYRLFTRGLKGQGFASRTLLLDDIARRIEDGEISDELLTLSECTAEPGADLDRGTHTDVSMRLAR
>SEQF1086_CAE44759.1 putative GntR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEVNRMARMVPPANLRESVIAQLRSQIVSGAAAPGMIYSVPSLANELGISTTPVREALLELSRSGLVEPLRNRGFRVQAI
TLQDLENHFDVRVMLESGALATLARQGLTDTAPLVALADEVAQAVKDQDVGQYIESDRSFHEALVSRAGNPLLTRMIMHL
RADMRLYGINSEEGRVRQRASVEEHYEMIDLAVKQQPDAIVALITRHIESWKPLFAAAL
>SEQF1086_CAE44760.1 delta-1-pyrroline-5-carboxylate dehydrogenase precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRPSVNSLMNTSHIANEPVLDYRPGSAERQCLANALDALRVAQSHVPLVIGGQRQRGVAARALHCPHDHGHTLGMVEQAD
ELTAGAAVQAAVAAQAEWAAMPFGERAAIFLRAAELLAGPWRQTLNAATMAGQSKTVHQAEIDSACELIDFLRFNVAFAE
RLQQSQPLSTHGALNRLDYRPLEGFVYAVTPFNFTAIGGNLPCAPALMGNTVVWKPAFTASLSNYLILELLEAAGLPPGV
INFVPGDSAAVSAAVLRSADFAGLHFTGSTAVFDGLWQQVARNLPGYRTYPRLVGETGGKDFVLAHASADPETLGVALLR
GAFEYQGQKCSAASRAYVPASLWPRARQALLDNLATVRMGDVADFGNFMGALIDRKAYERVMRYIDRAPAQGSTVLAGGR
GDDRVGYFVQPTVIEAADPKAATMQEEIFGPVLSVHVYPDAGWNDVLALVDQTSPYSLTGAVFANDRQAIGQAAAALRFA
AGNFYVNDKPTGAVVGQQPFGGTRRSGTNDKAGSMLNLQRWVSPRTVKETWVPARHYGYPSMDDAA
>SEQF1086_CAE44761.1 short-chain fatty acids transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPNNHLAAAAPAQGRQAIASPMERFSQAMVAWAEKWFPDAYVFVVVACAVVALGAVLHGGDPLAVSKAFGEGFWSIIPFT
MQMAMVAITGYVLALSPPVARLLRALAHVPSTPRGAVVFIGTLSILLSLVNWGLSLIFSGLLVREMARRTDLRLDYRAAG
AAGYLGLGCGFTLGMSSSAAQLQATPASIPASLMPITGVIGFSETILTWQNLVVVILVTVVSGLVCYFTAPSPERSLTAQ
DLGVDLTEPEAQAAQRQRPGDYLEFSPWLTVAVVGLASGWLYLTFRSGNPFITMSQLNTYNFVFLLLGLLLHWRPRSFLE
SFGRAMPSIGGVMLQFPFYGGIGYVLTKVANVQGHTLSDAIAHWFVSLAHDSSVFSILVSIYSAFLGFFIPSAGGKWVIE
APYIMDAANQIQAHLGWTVMVYNIAETLPNFINPFWMLPLLGILRLKSKDLVGYTAMQFLVHFPIVVAAGAILMHTFSYV
PPVIPGQ
>SEQF1086_CAE44762.1 putative molybdopterin oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGKGNMKQVTGYCTLCRSRCGSVNHVENGRLVAVTPLAGHPTGGALCAKGRAAPEMMAESHRLLRPLRRTNPRGAADPGW
REIEWSEALDEVAARLAVARRRDGAESVAFAVTTPSGTPMVDSFEWVERFVRVFGSPNLIYAVEVCGWHKDYAHALTFGR
GIGVPDLEHTDTMLLWGHNPARTWLAQAARIAAARQRGARVVVVDPNREGSSQQADLWLRVRPGADGALALGAIRHLLHT
GRFDHDFVARWSNGPYLVDGASGALLRAVDLWPDADPAARVVMQDGSPAASGRGADTARAELFGSWTLRLHDGRACEAVT
VMHALRVAVERYTPDEVARLAWLDEAELAQFNAIFENAPRLSYHSWTGVGQHTNATQTDRAIATLYALTGACDRKGGNLW
TVAPPYRAVNGYRELLSPVQRAKALGLDELPLGPPSLGWITARDFCRAVLQQDPYPVRTLVSFGSNLLVSQAETARNLEA
LQALDFHVHVDMSMNPTAMNADIVLPANMPWEREALKLGFEITQAAVEHVQLRPRMVEPAGESRADYEIVLELARRLGLR
DAFFGADMDACWNHQLAPLGIDVQALRRQPEGIRFPQPFVHEKYKAVRDGQPVGFPTQDGRVQIHCAALRDIGQPALPVH
VEPADTPARHAGAYPLVMSTAKSGWFVHSSHRYVASLRRKSPEPQVYLSVQAARARGIASGDWVRVRTPYGEVALRAKIN
ADLHENVAIAEFGWWQGCEGLGRVDGAIVGPASSNINAIMTDRHRDPVSGSVPLRATVCDIVRDDARNRGSWSGAREFVL
AQKRGIAHDVAEFRLLPCDAQALPDFLPGQHVIVSMPGGAARRAYSLTGPNREPAHLSIAVRRVRDGDGPAGVMSNALHE
LAEGARVLLSAPAGVFTPPLRTARPVILMASGIGITPFHGYLEALAQDAGPAPSVLLVHACRDGSSHPYGAELKRLAQRI
GSVCTLTVYAEPASDDAPGRDYQQRGRLDFAWLPPATVAARPLVYLCGSPGFLAFCTDALAARGIPRFDIFSETFTSEKR
VPATLAPQPIEIEAEQGGFTWDPSAGTLLDAAERAGLSLPSGCRVGQCESCAMHIVSGQVAHLIDFDGSADTCLTCQAVP
ITPLTLRR
>SEQF1086_CAE44763.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSARNVVFPAGRQALYDRNRYSPAIRSNGFLFVSGQVGSQEDGSPKQGLQEQVRQAFDNLNAILAAAGCSFEDVVDVTVF
MVDPQSRFEQIWEVVPEYWGQAPHPTLTAVGVTWLYGFDFEIKVIAKLPRAGEG
>SEQF1086_CAE44764.1 probable LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDRFDAMRAFARVVETGSFTKAADTLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNATADGAAYYERVQQLLADLEDAE
TSLSGASATPRGRLRVDVPSPFASTILVPALPAFQARYPDILLHLGVSDREVDLIDENVDCVIRGGQISNLSLAARHVGD
LQLGVYAAPGYLARAGVPAHPGELQDARHRIVGFSWSRARRLFPCAMQRADERIEVAGRHALLLDEGNAYLAAGLAGMGV
IGVPTYMAEAHVERGALIRLFGDWRLDPMPLYIAYPQNRHVSAKLRAFIDWIVELMARHAPVTDAPPPRRSARLPGGPDA
APPDITGA
>SEQF1086_CAE44766.1 putative dehydratase/racemase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNLDFLKGVRVIESSAFIAAPLAGLTLAQFGAEVIRLDMTGGGIDYERMPRMPGGTSLYWTGLNKQKRSVALDLRKPEGR
DLARKLVCAPGPDAGILLTNIGVSWLSHAALAEGRPDVITCTIEGNADGSSAVDYTVNCATGYPHATGDGREPVNSPLPA
WDACCGYQAAMAVVSVVLRRRQTGQGAELRLALSDVAFALMSHLGTLAQAELLGEDREPLGNHLYGAFGRDFVTRDGNRV
MVAAISKGQWQSLVRTCGLAEAVAAIEARTGAKLAEEAQRFAHRDAIAAACEPWFRARMLAQVRTALDAGGVCWGLYQTA
TQMLARDGRAGSANPLFERIATAGAGEHWALGTSVREPRAMRRPTQGASRLGQHTDQVLGELLGLSARQLSDLHAAGVVA
GPSGDPRGAH
>SEQF1086_CAE44767.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSMDAKSMLLARGRLLEDFKTGDQYAHWPGRTITEADNIQFSLLTMNRHPTHCDHHYASQTEFGKPLVNSGLTLAIVLGM
SVDDISANAVANLGWQEIELLAPVHPGDTVYARSEVLSVRESKSRPGQGVVTVRTEGVRADGVVFMRFVRSCLVPSRASL
AGAR
>SEQF1086_CAE44768.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGKEKSRPLPNINLKLLHTFMLVAEHCSFRQAAELSHRSQAAVTGQIKQLEAQLGVDLFHRTTRQVRLTAEGAQLLESAR
RAAHEMENGLRQIQETVDLKRGRIFLSCSTTVSSTRLAPILAAFERDYPGVEVFVRELTSGDMFETVRREQADFGIGPIM
ELPEFDFEPILTENLYAVVPRNLFPDTAEQITLARLASMPLLLLNPGTALRALIDDTARSRGLTINAKFQFSQAQTLISM
ATAGLGAAVLPAMVLPAKPHKDVQVLPIASPRMTRDVAIVRLRHRKLTPAAARLAQLVRDLIHGPLGRRTARATTRRPSA
>SEQF1086_CAE44769.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQSFYQEPAVAADLKEAPHPPKALSGLRVLDIATFLAAPFCGTIMADFGADVIKIEQPRGGDSLRKFGTPSPCGDTYMWM
SEARNKRFVTLDLRTPEGAALFKELVRESDVVLENFRPGTLEKWGLGYDVLSELNPGLILLRVSAYGQDGPKREEPGFAR
IAHAFGGLAHLAGEPDGPPVVPGSTSLADYISGLWGAIGVLMALQARNHTGLGQVVDIGLYESVFRLLDELAPVYAATGF
VRRRLGADVPNVAPHSHYQTRCGQWVAIACSNDRMFERLASAMGAPGLAGDARFATAAARAENRQAINALVAAWSARFDL
QALLDLCRNEGVPCSKVYSIEDIFQDEQYRARGNLMEVDDPRIGKTVLPASVPRLSGTPARFLRAGGALGQDNAGVYEEL
LGVCGERLAALRQTGVV
>SEQF1086_CAE44770.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE44772.1 MerR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTWTISELAREFDITPRTIRFYEDQGIVSPLRDGRNRVYSTRDRARLKLALRGKRLGLLLSEIRSLIDMYDGPGDTAPQ
LRHYLTILAQHRATLTQQQRDIEDTLAEIAQQELQCQRLLAQKQ
>SEQF1086_CAE44773.1 metallo-beta-lactamase family protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNPNEQKLQYPWDQTQPEPGVALVVAEGVKWIRMPLPFALDHINLWLLRDEIDGRQGWTIVDCGIARDEVKTIWEQVFEN
ELEGLPVLRVLVTHMHPDHIGLAHWLCERWNAPLWISMTDFMVASLWSRRTDGGASGGQAAVEHFARHGLTDTDAQEQIR
QRAGYYPNLVSAVPSRYTRLLHGDEVAIGGHPWRVIVGYGHAPEHVSLFSPAHKVLISSDMVLPRISTNVSVFDHEPDAN
PLPLYLRSLDRYDDLPADTVVLPSHGRPFVGLHERIAQQHAHHDERLAEVLQACATPQSTADIVPVLFKRKLDLHQLTFA
MGEALAHLHALYFEGKLKRRTDADGIVRFQAA
>SEQF1086_CAE44774.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE44777.1 acetyl-CoA acetyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLSFPSPARPWAACWACLSGLAAHELGSAAIKAAIERAGIKPEQVDEVIMGNVLQAGQGQAPARQAALGAGLPLGVGCTT
IHKVCGSGLKAAMFGHDLLTADSVDVVVAGGQESMSNAPYLLLKGRQGYRYGHNTVYDHMALDGLEDAYDRGKAMGVFAE
DCATKYSFTREQQDAFSLESLRRARAASEDGSFKWEITPVTVAGRKGDTVIDTDEAPTKAMPEKIPTLKPAFKKDGTVTA
ANSSSISDGAAAMVLMRASTAEKLGVKPLARIVAHAQHAQEPNWFTTAPVGALKNLFKKTGWQASDVDLYEINEAFAVVT
MATMKDFDLPHDKVNVHGGATALGHPIGASGARLMATLVGALRKTGGKRGVATLCIGGGEAVAMAIEML
>SEQF1086_CAE44778.1 carboxyltransferase subunit of acetyl-CoA carboxylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPMPIIESRIDTRSQDYADNARAMQAQLDDLNQKLARTAQGGSETARAKHVGRGKLLPRERVEQLVDPGSPFLELSPMAA
HGMYGDEAPGAGMITGVGRIAGTECVIVCNDATVKGGTYYPMTVKKHLRAQEIAAQNRLPCVYLVDSGGANLPRQDEVFP
DRDHFGRIFYNQAVMSSQGIAQIAVVMGSCTAGGAYVPAMCDESIIVRDQGTIFLGGPPLVKAATGEEVSAEDLGGGDVH
TRLSGVADHLAANDMHALQLARNAVARLNRAKPAALALAPVREPRYDASELNGIIPADTRKPYDVREVIARIVDGSEFDE
FKARYGTTLVTGFAHIHGMPVGIVANNGILFSESAQKGAHFIELCAQRKIPLVFLQNITGFMVGRKYENEGIARHGAKMV
TAVATAAVPKFTILIGGSFGAGNYGMCGRAYSPRMLFMWPNARISVMGGEQAASVLATVKRDGIEARGAQWSGAEEDAFK
QPIREQYEREGHPYYATARLWDDGIIAPADTRRVLGLALSAALNAPIEDTRFGVFRM
>SEQF1086_CAE44779.1 biotin carboxylase subunit of acetyl-CoA carboxylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFSTLLIANRGEIACRVAATARRMGLRTVAVYSDADANARHVAACDVAVHIGGAEPRASYLRADAILQAARDTGAQAIHP
GYGFLSENEGFAEAVAQAGMVFVGPPAGAIAAMGSKSAAKALMERAGVPLVPGYHGEDQDPQFLRQQADAIGYPVLIKAS
AGGGGKGMRVVEESAAFADALASCQREASASFGDDRVLIERYLQKPRHIEIQVFADSHGNCVYLFERDCSVQRRHQKVIE
EAPAPGMTPERRRAMGEAAVAAARAVGYVGAGTVEFIAEPDGRFYFMEMNTRLQVEHPVTEMITGHDLVEWQLRVAASQP
LPAAQDELRLDGHAIEARIYAENPEKGFLPSIGTLAYLGLPAHTAFANGEVRVDGGVRMGDTITPYYDPMIAKLIVHGAD
REQARARMIQALAHTQAVGVQTNAAFLGRLMRDEAFATADLDTGLIERRRATLLPEPQPAGADVLALASAAVLVRQGLAQ
PQGEAGKTADPWDARDGWRLGGRYRQTLCWVDNGERRDIEITREGGQWRIGAAPAAGQAFSWHAQPSANPQLSYGLRITL
DGRESAGTVVLHAGKAYVFHDGATHILDLYDALAHAQDDAEGHGGGLTAPMPGKIISIAVAVGDKVEKGQALLVMEAMKM
EHTITAPAAGEVAGLFYAVGDQVGEGAALIEVK
>SEQF1086_CAE44780.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAMQDFRPGVYRHYKGDHYLALGLARADETDEVVVVYTRLYARAGLPMSTRLLRIWNETVDTGAGPQPRFAYVGHVTPEQ
G
>SEQF1086_CAE44781.1 succinylornithine transaminase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEFSQFKVNALMEITARPDLVFVRGQGSWLEDHAGKRYLDFVQGWAVNTLGHCAPEMKRAMAEQADKLMNPSPAFYNLPS
IELAQRLTSASCFDRVFFANSGAEANEGAIKLARKWGRVNRNGAYKIITMNHGFHGRTLATMSASGKPGWDTMFAPQVEG
FPKAEINDLDSVRALIDAQTVAVMLEPVQGEAGVIPATREFMQGLRKLADEHGILFIVDEVQTGMGRTGSLFAYQQFDVI
PDIMTLAKGIGGGIPLAALLAREEVCVFAHGDQGGTYNGNPLCAAVGVAVFDTITAPGFMEAAQARTRQLSEGLLALSAK
WSLRGERGMGLLRALVLDRDDAPAIVEAARMLAPEGLLLNAPRGNLLRFMPALNVTEADMARMLEQLDGVIAAVRK
>SEQF1086_CAE44782.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRVFAGLCAGLALAAASFAAHADYPERPIRMLVPFPPGQATDIFARALAEKLGADLKQPIVVENRAGAGSNIGMGEAAR
ATPDGYTLVVAGSAAAVNQTLYKNINYSLTKDFAPVSGVFSVPLVFLATPASGIDSLQKLVTQARAHPGELAYASAGIGG
TQHLSAEMFKAAADIDIRHIPYKGSGPAQADFLGHQVPLMVDSVTAGLPHIKTGKAVPLAVTTAGRLAQLPDVPTVAESG
YPGFEAIGWAAVLAPAGTPPAVTELLSRHIGQALGSAELARFLRERGAEPMPTTPQATGQFIAAEVQKWGDAVRRSGAQV
D
>SEQF1086_CAE44783.1 low-specificity D-threonine aldolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNASVAPILPPAARAGQALCDVDTPSLALDLAAFERNLRVMQDWAERLGVALRPHAKAHKCPEVALRQLALGARGICCQK
VSEALPFVAAGVRDIHISNEVVGPVKLALLGELARQADISVCVDHPDNLEALAQAMERAGARVTVLVEVDVGQGRCGVTD
PQVVLALALARRADAAAGLRFGGLQAYHGSVQHMRTQADRAAVCAEVARAAAAHADALRAAGLACPTITGSGTGSAQFDA
ASGVFTELQAGSYPFMDADYGDNEWAETLRFEPSLYVLSTVMSTPAAGRVVLDAGLKSSTAECGPPRVAGRAGLTYLAAN
DEHGVARVEPGAPAPALGKMVRLVPSHVDPTFNLHDSLVVFRDDVVVDLWPIAARGLSR
>SEQF1086_CAE44784.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSMKSWIKTLTLALAVAGAATSANAQQFFRIGTGGTAGTYYPVGGMIANSISQPGKLIATAVASNGSVANINGILGGSLE
AGFTQSDVAYWAYSGTGTFDGKPKAQDLRLIATLYPESIHLVARKGSGIKTVADLRGKRVSMDEPGSGTLVDVRLILGAF
GMTDKDIKAEYLKPNQAGDKLKDGGLDAFFFVSGAPAGAISELASSGAGIELVPIVGPEIDKLRSQQEFFTPDTIAANTY
QNVGEVKTISINAQLVTSAKLPEQTVYDIVKALYSDATRKTLDNGHAKGKLITKENAVKGAGIPFHAGAEKYYKEVGLLK
>SEQF1086_CAE44785.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQIDHDKTQQLTEKYDSEIRFRPLDKTATWIVSILLVTLSIFHYYTAGFGLLREATHRGVHLAFVLSLIFLVFGFSKAHY
QREPKSTLLCPGGVPLYDWAIAIVLALSVLYIPYIFEDLAFRVGNPLPMDVAMGTILIVGLLEGTRRAMGWPLPIIAMVF
LAYAAFGPYFPGLLQHAGNNWPQIVNHMYLTSQGIYGVAVGVVATYVFHFVLFGVLATRIGLGQLFLDVASTIAGRYAGG
PAKVSVFGSAMFGMLSGSSVANAVTVGSLTIPAMIRIGYPRHFAAGVEAASSTGGQITPPIMGAAAFLMIEFLGIPYQQI
AIAGIFPAFLYFFGMFMQVHFEAKREGLRGLTEEEMPTLKASFKKRWPTLLPLIMLIGVLASGRTPYLAAFAGITGCIVV
GLLNPMQRLRLRDLYEAFETGAKYALAVGAAAGTVGLVIGVVTLTGVGFKISYIVISAAQAIAGGVGTIIPDVVANTQTL
TLIAALVMTGIVCILMGCGIPTTANYIIMVAVAAPTLVQLGVQPIAAHFFVFYFGILADITPPVALAAYAAAGMAGSDPF
KTGNTAFRLGITKLIVPFVFVFSPSLLISVQGFTWYDFFTTLVGCMVGLVLLSAAFSRYMLVEMKSWERWVCVVGALLTI
LPGLTSGLVGLAICIPVFLRQLAQLKLENGAKAA
>SEQF1086_CAE44786.1 putative heme receptor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSPRPPAPWRAPLALAGLSLGCAAGAYGAPAPAQTVVTLPAQEVIGDSVAAARSVLRLPEIERAQADNFASLVDQLPGI
SMAGSPRPGGQSLNIWGMGDTEDVKIVLDGAPKGFEKYRQGSVFIEPELIRRIEVDKGPHNLVDGNGGFGGTVKIDTKDA
ADLLPPGARFGALAKYGRHSNDGQDIYSVALYGRTRADGADGLLYANRRDGGDLRRPDGTRFAYSRNNQRSLLAKVNLYP
DDAQTITLSAMRSNAAGWQPFAAKRDDLPAPSQADIDRYGLTEAWRRKLVHRDQLDQNYSAKWNIAPSAHPWVNLTLAYA
RSDTRQRDRRSSRASQSAFLGTLGNKSWVDYRDDRFDLSNESHVALGTAEHVLLAGLRWHRHRRDTLMYYPPGRGEPDYN
HGYFQPHYMPSGTQTVRSLYLQDAVTVGGLTVTPGVRYDHVANTGRPNDAPRYNNPAPVAGHDYRRVSYAGWTPHLGVVW
KAARGVALFADAGRTWRAPVIDEQYEVQYAKSNVSGSSRALRPERIVGLRAGAVLDYNDIATRGDSVQIRTTLFRNRGKH
EIFQRRGVACRGQAEGGAASDCPKPLSNYRNLPGYTIEGLELETYYDSPAMFASLSLSAMRGHRDASPRDPWGPRTWIAE
IPPVSARAMLGVKLPRLDMVLGWRGEFVRRQDRSPTDGDPLAGYWALPKTAGYALHGLFASWQPRHVKGLDVRLAADNLF
NRPYHPYLGEAVSGTGRNIKLSIAQRF
>SEQF1086_CAE44787.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFDILVYLFENYYTPQACPAADVLAKRLAAAGFEHEDIDDALGWLYGLAETTERCVELAHAPATGIRIYTDAEYQQLGTE
SIGFITFLESAGVLPAPLREIVIDRALASPETPISLSKIKIIALMVLWSQEAEIDNLVLEELLDDEGSRRLH
>SEQF1086_CAE44789.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQVDTHQQAGSELYAWRQFLGRATLWLGVVLLGSAVVCWVAANWPAMTKIQRFAGAQGLLALSAVIAAWVAWRLREATGV
RRHGVGALLVLAGLFLGALLALLGQTYQTGADTWELFAWWALLLLPWALAGASQALWLLWALILNVAVALWLGERLLSWW
WSLSGAGFPALVLAALNLAMLACWEWVAHHRHVSTRVGPRVLALLAQGVLVAALLFDFGALADLASATGIAWIATTLGMG
FYYQQVRRDLVILALLAAAMICVSLRVVGAWLLELEPGVWAALPLAGLLMAEAVWAVRWLRRLGEQSTRAAVDAEPAGAS
AGNGLDPAEAGAPVLELAPEDARGAAETPWYVHGLLGLSAWLATWLLLLFVAASGIVASKEGALVAGLGLCIVAVAVLRT
DSGPFWRQCATAMGFAGQILVMVGLWDSASFASACFFILALGAVVYALTPDLLLRFLSGWMIALAGAGLIWRGLTPGMGD
KQLLGLLLEFDALRAAFVWLPVAVVGAWGAAVAFSLGHRWSRIRPQQLDPLGWALALAAQSMVWLAGGVTAMQLRALWAL
HPSTAVLTVAGVLLPVAVALSVLWPRRRQLTAGMLWGVPLALLVLALFWLPSPGVAFALAWLLLGFGLHKPRLTMLGVIS
LLAYLMIYYYQLQIPLLDKALWLAGGALLLFLGRLLVWLVPQWMRTAAPATRAPMGPPSRSLRWRVALVLAGLAVTLAVV
NGNIWQREALLAKGRVAILELAPVDPRSLMQGDYMALRFAAGEDIERWRNDRPADGQDAAAFAHIDGYVVLAPDERGVAR
PVRIQEQAAPRDGNEIVLRYRLRASGVRLVTNAYFFPEGEQQRYQRARYGEMRVDDRGTGLLVRMLGEDLNPL
>SEQF1086_CAE44790.1 DNA topoisomerase iii [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNKTLIIAEKPSVALDISRALGGFAREGDYFESDRYVLASSIGHLLSLVAPNDPVKGKWSFTHLPVIPPAFELGPTDKKS
AERLKLLVRLAKRKDVDAIINACDAGREGELIFRYIVQFAGVKKPIQRLWLQSMTQQAIRDAFANLRDDEQLKPLEAAAR
SRAEADWLVGINGTRAMTAFNSKDGGFFKTPVGRVQTPTLAIVNERENRIRSFVSRDYWEVHATFVAAAGLYEGRWIDPA
FRKDERDPEKRESRLWSLAAAQSVVAACRAQSGSVTEESKPSTQMSPALYDLTSLQREANGRFGFSAKTTLALAQTLYER
HKALTYPRTDSRYLPEDYINTVRQTMQVLAQGDSNAVGALSRHADTVLAQNWVKPNRRIFDNKKVSDHFAIIPTLQVPRD
LSEAEGKLYDLVLKRFLAVFFPAAEYRVTTRLTEVQGHRFKTEGKVLVTPGWLAVYGKEAQGEDANLVPVADGETVRAED
VEAVGLATKPPARYNEATLLSAMEGAGKLVDDEELREAMSERGLGTPATRAAIIEGLLNEAYLRRDGRDLVPTAKARQLM
ALLSGLDVSELTSPELTGEWEHKLKQIEQGALDRAAFMREIAQMTQVIVKRAKEYERDTVPGDYATLQTPCPKCGGVVKE
NYRRFACTQCDFSIGKHPGGRTFELPEVEELLAKREIGPLQGCISKMGRPFAAILRISGEYKLEFDFGQNDEEDNEAVDF
SGHTPVGACPKCSARVFEHGMSYVCEKLVGLQKSCDFRSGKVILQQEISREQMEKLLTAGRTDLLDGFVSSRTNRKFKAF
LVRQPDGKVGFEFEPRGDKPGRPGAAAKKAAGKTATKTAAKAPAKTAAKKAVKKAAPKKAATKTAAKKAAKKSAA
>SEQF1086_CAE44791.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTALRSPRGATRRRFLAGSGALMAVGLAGSRLSWAQPALGRVAYGQGSIDPFFAAGYVALKQGYFAADELEVEYLNSQSG
PRTNQLLAAGQIVFGATAATAAPALTLAGKPAALVFGFDRKLTYANIIVRRADYESGKIRTLADLAGKRVGATQPQSSTW
LMALYLMQKAGVADKVDIRPLGDLATMLGALKTGSVSASMATLSMMEQAVQEGWGMPIFDATTEASWQEFMGGDVPGIAA
LTLQDTIQKRPEVVQAFVGALVKAQDFISANSAAAVTDLIYDDYLNAYARPAIEKTIGLYQQTVFLRDNIITEDAYARMT
AIMGDGRQFSNEELKKVPYSACVDMRFVRKARGL
>SEQF1086_CAE44792.1 ABC-transporter, ATP-binding component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMIELEHVGKVYQARNATVHAVGEVSLRIDDGEFVAIVGPSGCGKSTLLNMIAGFLPPTTGTVRVAGAPVAGQVPPALGY
IFQKDTLLPWFNVRKNVALGLRFQGVDSARIARRVDELLELGHLSGFANAYPHQLSGGMRRRVALLMSLAVEPRILLLDE
PFGALDTHTKTHLHRELGEIWRKLGQTIVMVTHDLDEAITLADRVVVLSGPPSRVLLDERIAIAHPRDVFTLRDTPQFTA
HMRSLWAVLGQQFRNAA
>SEQF1086_CAE44793.1 ABC transporter, permease component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSDSPLPDALRDGVRRRLRVTAWQLLILALILGAWEGLTRVPWFVQNTIFDPFFISQPSRVAQRLWQWMQPGPQSVWPH
LWLTLQATLLGLAVGVGSGFVVGLALSRSRMLADVFNPFIVAFNSMPRIAFVPLITMFFELGMASKVVTSWFVVFFLVFF
NTYKGGRSVERELVDFCRTLGGSPRQILWRVRIPTAAAWTFAALPNAISFALIGVVLAEFVGSTTGMGYLMITALATLNA
TDMFAAVTLLSVVGIVLVYCVTWLERRLLHWAPEFRD
>SEQF1086_CAE44794.1 gluconate 5-dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MISLPYLQRFALSGQVALVTGSARGLGLRIAQALAGSGAHVLINGRDAHAVEAAVSDLRQQGLRASAQPFDVSDEQAMEQ
AFARIDAEHGRLDILVNNVGARNRKPLAETSPAEIRAMMDTNLIAGILLARLAAQRMMRQRYGRLIAITSVAGELARAND
AVYPAAKQGLTGMMRALAVEFGGHGITSNAIAPGAFATETNAAIANDPQAGAAMAARNPTGRWGDPEEIAGAAVFLASPA
ASYVNGHVLVVDGGLSVQF
>SEQF1086_CAE44795.1 probable aldehyde dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKQHFIDNASVPGSSGERIPVIDPSTGQEFDSIARGNAADIDLAVQAARRAYEGAWGRLSAAERGRLMLALSLKVLEHRD
ELTALESRDCGKPLKQARADVIAIARYFEYYGGAADKLHGETIPYQQGYTVLTLREPHGVTGHVVPWNYPLQIFGRSVGA
ALAAGNACVVKPAEDACLSLLRVAELAAETGFPAGALNIVTGYGHEAGDALTRHPGIDHISFTGSPRVGVLVTQTAAERH
VPVTLELGGKSPQIVFADADLDALVPVAVNAIVQNAGQTCSAGSRLLVERGAYERVLERLGAAFAALRAGPAQSDLDCGP
LIRKTQQERVRGFLDLARGDGIATVAQGRIVPEAPAEGYYQAPTLLRDVPVDHPLAQEEVFGPVLAAIPFDDEADAVRIA
NATEYGLAASVWTRDGGRQLRIARKVRSGQVFINNYGAGGGIELPFGGVKASGHGREKGFEALYGFTVLKTISIKHD
>SEQF1086_CAE44796.1 alcohol dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRLNGKTAIVTGAGSGFGEGIAAAFAREGAKVAVADINEAGGQRVAAAINAAGGQAVFVRADVSDNAAVANLLAATLKAF
DGLDIVVNNAGTTHRNRPMLEVEEDEFDRIYAINVKSIYLTAKHMVPYFRAHGGGSFINIASTAAIRPRPGLTWYNGSKG
AVVTTSKSMAAELGPDNIRVNCVNPVIGATGLLADFMGVPDTPENRKRFLATIPLGRFSTPQDIANACLYLASDETAFIT
GACLEVDGGRCV
>SEQF1086_CAE44797.1 acetolactate synthase large subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVSMNDRLHTSTLSALQQVEHAAAVNGAKILLHTLIERGVDTVFGYPGGAVLPLYDALYAEPRLRHVLVRHEQAAVHAAE
GYARTTGRPGVVFVTSGPGMANTTSGLLDAMCDSVPVLCISGQVSTAAIGTDAFQECDAIGISRSVTKWNTQIRAVQDVA
EVVGRAFDLTRQGRPGPVLVDFPKDIQLASPADAPQGEADPARRQLAALRARRQGGKAATRVPQGAVRRAAALLAQARRP
VFYGGGGLVNSGPQACAAFTELVRQSGAPCTLTLMGLGAFPASDPQFVGMLGMHGTLEANLAMHNADLVVCIGVRFDDRI
TGKLSEFCPHARKIHIDIDPASINKVVRVDVALVGDCLPLVQALRDELAASPLPAQRLGPWWQRIDTWRARDCLAYTPAA
DEILPQHLMHRLGAALDGRDAIVSTDVGQHQMWAAQYLRFDRPNRWLTSGGAGTMGYGVPAAIGAQIAHPGKTVVCVSGD
ASVLMNIQELSTAMQHDVPVKIVLCNNGYMGMVRQWQELIHGGRYSHSYNASLPDFVALARAFGWGAARVERPQDLDAAL
AACLEHPGPYFLDVAVAEQENCFPMMPAGHGHHRMMLADGQWYEEPPLPESPSPQA
>SEQF1086_CAE44798.1 AsnC-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLDKFDLAILKALQDNARASLNDIGAAVGLSSTPCWNRIKRMEGAGIIRGYTVDIDPASIGFTDTVIVHVTLESHSEET
LYEFGRALAQIPEVLEAFLVSGDYDYYIRIAVRDTRDYERLLHERLYRIPGIRHSKSCFVLRSLKETRLPLTPPPEQA
>SEQF1086_CAE44799.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MWLPKFRCSQIVMIVRPRPTAWGLLFILRGSVIPHIAAKVAVIVALSCVVAWLHARQWFAPGHLNAVPFSLFGLALSVFL
GFRNNVCYDRWWEARKQWAELSAQCRSLARETAAVLSGAADAPRQARIVRRLIGFNHALVARLRGGDPLTAARPWLPDAE
SMALAGHRNVPDAILRAVTGDLHEGGPQRRYGEVVYQGLQQRVLACAQVQAACERIKTTPTPFAYSLLLHRTAWLFCLLL
PFGLVGTLGPLTPLAVAFVAYTFFGLDALGDELEEPFGLAENDLPLAALARDLEIDLLEGLGAHPLPAPLLPRGYVLT
>SEQF1086_CAE44800.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRPMTEIIKPWHSVRRSRLHGNGVFATRKIPAGTRIIEYGGKRISAEEADRRHPTNPDDPFHTFFFSLSSGRVIDGGDEG
NDARWINHSCDPNCEAQEGRHGKRVYIVALRDIARGEELFYDYGLVLDGRITRKLKEGYRCLCGTTPCRGTMLALPEKKK
TKARSAEKA
>SEQF1086_CAE44801.1 3,4-dihydroxy-2-butanone 4-phosphate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNVVPTPVFPLFAQPFATRLERALQHLRIGRPVILMDDFDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGETL
DRLELPPMVDSNRSRYSTAFTVSIEAREGVTTGVSAVDRVTTIRAAIAPGARSGDVVSPGHVFPLRAQPGGVLTRRGHTE
GSVDLAALAGLRPAGVLCELMNADGTMMRGASLERYAAKEGLVALAIDELAAHLQARGATGAPAELAVAA
>SEQF1086_CAE44803.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE44804.1 choloylglycine hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIFRRSRPGTIGAVTLLCASLLAMPASSACTRFVYHGANDEVITARSMDWKVDVGTNLWAFPRGMQRSGQAGPNSIQWTS
KHGSVIASGYDISTTDGMNEAGLVANVLWLAESSYPEYDGKTPGLTLAAWAQYVLDNFASVREAVDTLASEPFTVVTDNV
PGEQRPATLHLSLSDASGDSAIIEYIDGKQVIHHNRAYQVMTNSPTFDKQLALNEYWKQIGGTVMLPGTNRASDRYARAY
FYVNAIPKSEDPVEAIASVFSVIRNVSVPYGITTPDQPNISSTRWRTVADHKRKRYFFESALTPNIFWIDLGALDFSAES
GKVMKLDLGPDQAHIYSGQANAHFEQAAPFKFLGL
>SEQF1086_CAE44805.1 ribonuclease E [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGEDRHGFLPFKEVARSFFKE
GVDVRTARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLDVP
QGMSIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAARDNAAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAT
AFMSVVIPDNVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARSTRGADIEETALRT
NLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHI
TCPRCNGTGVIRDAESSALHVLRLLQEEAMKENTAAVHAQVPVDVATFLLNEKRADITKMEARLKVNLVLIPNKHLETPH
HHIERLRHDDPRLEETKTSFELAEAPATDLTWQPREHEIKARPEALVKGITPAQPAPVSTPAPAKAPAAAAAAQGGLGGW
FKRLTSWLGGSAEPAKTETKSEDEKRGANRARRAHDGQNRRGERHGSDRNRHRRNEPRGEHAESGDARHHVRGGRRQEER
GERGERGQKEARTEREQTQQQQAAGQPRQERPSTAETGEEGGRGRGRGRRGRGRGRREEGQTDTPMTEQENMVAALAETV
ATALPEKRQAAPAPAAAAAAALTVAEAASSNEQAPVTEDADGIDGIDANADAGAETGTDPERKRRRRRSRRGRRSQEDGS
TVNAEGVEGADDEQADAPAGVADIETPAQPAEPETVAAPVAVSVAADEPAATIETAAAEPAAPQATEAPQAEPVVAAADT
APQAVQPVQAELTPVETPQAQAQPAEPAAAAPVETAPVETAPVETAPVETTPVEAPVKPAEQAAAPVEAEAPVAQPEKTP
EPAAVRPAAAIVVPAQAAAPATGALHDVLDAAGLTWVETDPERHAQTQMRIAAAATPARLGRERKPVASVSNEPLVQVET
RH
>SEQF1086_CAE44806.1 ribosomal large subunit pseudouridine synthase C [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRKETSPGTTPPAVRMLAIGPEHDGQRIDNFLLRLCKGVPKSHIYKAIRGGEVRVNKGRISAEYRLVEGDVVRVPPLRLP
DPGATRPVPGAEFPVVYEDDALLVIDKPAGVAVHGGSGVSFGVIEQLRAARPQARFLELVHRLDRETSGLLMLAKKRSAL
LALHAMLREGKGDKHYLALVEGDWVNDRQHIRLALTKWTTQSGERRVRVDQAGQAAHTIVTLRKRFGGYSLVDAELRTGR
THQIRVHLASSGFPIVGDDKCGTDEIRAAFARRGFGRMFLHAHQLTLPHPLTGETLRLTADLPPACLKLLKQLETA
>SEQF1086_CAE44807.1 probable hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGYSLVVFDWDGTLMDSTHSIVAAIQGACRDLDLPVPSASSASWVIGLSLESALRRAVPELTQAMVPRFLERYRTHYLLR
DSELRLFEGVRELLADLASQDVRLAVATGKSRVGLNRALAATGLGPLFDATRTADETFSKPHPAMLQELMHELGHEADAV
VMVGDTSHDLQMAANAGVHGLGVAYGAHTLAELEACAPQAVVDSVAVLREWLLARSPGRIESV
>SEQF1086_CAE44808.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLIRKPSDIPSSQITPETVWQGRRDWIARAGLAAAALGLPGWAQRAAFAQDAALPGAPNSRYAVVDKPTSFKDVTTYNNY
YEFGLDKGDPAAHAGRLRTWPWEIAIEGEVGKPGVYAIDDLLKLAPMEERIYRLRCVEGWSMVIPWVGYSLSTLLQRVEP
TGNAKYVEFVTAVQRDTMPGVRSSVLDWPYVEALRLDEALHPLTMLVFGVYGKVLPNQNGAPVRLAVPWKYGFKSAKSLV
AIRLVEKQPVSSWMNAAPQEYGFYANVNPDVPHPRWSQATERRIGEDGLFSPKRKTLMFNGYAEQVASLYQGLDLRANY
>SEQF1086_CAE44809.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPAAPLTARAIGRIKPLLFVAGLLPFARWFWLGANDGLSANPVEFLTRSSGTWTLVCLLVTLAITPLRRLTGQPALVRLR
RMCGLFAFFYGSLHFLAWVWWDRGLDPVSMLQDVGERPFITVGFAAFVLMAALAATSTQWAMRKLGKRWQTLHRAVYAIG
LLAILHFWWHKAGKNDLQQPLLYGSVLALLLGWRVAAWWRRRGAAR
>SEQF1086_CAE44810.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE44812.1 AraC-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPKTRLYYAERLEPVLAWLAARPDADADLHRLAELACLSPYYFHRVYRALLGETVHATVQRMRLARASVALAQGKGSLR
QVADRAGYASEAAFSRAFSAQYGLPPGRYRAKRSSPFNPEELRMYPLTMEDFPGLSLAILAHQGDYQEIGNTFDRLALLA
AIQDLVRDGMQPPPRYIGVYYDDPAQVARDALRSRAGVSLPPGTAAPAPFEPLDIPAMRCAVLEYTGPYSEIEAPYNWLF
SQWLPASGQEPGDFPMFEEYLNDPKTTPAAQLKTRIYLPLA
>SEQF1086_CAE44813.1 L-lactate dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQNLSTITCIEDLRVIAQKRVPRMFYDYADSGAWTESTYRANESDFQRIKLRQRVAVDMEGRSLRTTMAGSDAVMPVAI
APTGLTGMQHADGEILAARAAAEFGVPFTLSTMSICSIEDVAQGSGKPFWFQLYVMRDREFVGNLIDRAKAAGCSALVLT
LDLQILGQRHKDIKNGLSAPPRPTLRNLIDLAFKPRWCLGMLGTRRRTFGNIVGHAKGVTDLSSLSSWTAEQFDPRLSWD
DVEWIKRRWGGKLILKGILDAEDARLAAESGADALIVSNHGGRQLDGAVSSISALPAIAEAVGSRIEVWMDGGIRSGQDV
LKAVALGARGTMIGRAFLYGLGAYGQAGVTRALGILYKEMDVTMALCGHKHINQIDRGILMPGTYPQ
>SEQF1086_CAE44815.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFKASLKALALCALAVLPMAAPAAQADWPAKPVTLVVPFPPGGSTDVIGRYFGARLGELLGQSIVVENRPGANTGIGATA
VARAPADSYTFMISGAPTYTTNSLLYANLNYDPIKSYEYVAIAASAPFVILTNPQTGIATVQDIVRKSASQPLSFGSFGT
ASTPHLAGEYLAQHGGAKLLHVPYRGSAPAMTDLIGNQIPLSIDTLVAALPQIRAGKVRAVALTSSARSPLLPELPTVAE
SGVAPYDFQTWFGIVAPHGTPQAVVQRMAQALQTMLAEPGTQARMRELGFEPEYVDAAGFRARVEQEMARNAGVIKAAGI
RIE
>SEQF1086_CAE44816.1 probable amidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGWESICAMTALQLRAELAAGHLSAREILQAHLEAIEHWNPTVNAIVTLDVEGARRRAAAADQAQARGEPLGLLHGLPVA
HKDSFLTAGMRTTHGSPVFADFVPERSSLVVTRQQAAGAITLGKTNLPEFGAGSQTFNAVFGPTRNPYDPAMTAGGSSGG
AAAALACRMVLLADGTDMGGSLRNPASFCNVVGLRPSPGRVPMWPTAAPYNTLSVAGPMARTVADAALMLAALAGPDARD
PLTIDADPGLFLGALERDFAGTRVAYAPDWGGLPVDPAVGRVLQAQLPRWEELGCRVDQACPDFGQADSSFHALRGLAFA
INQGETVRRHRDRVKDTVIWNTELGLNQSGAVLAQAERDRAQLFERMHDFMQQYEFLIGPVSQVPPFSADQEYIQRIGDV
EMRNYIDWMRSGYYLSLTGHPAISVPCGFTETGLPIGIQIVGRYRDERGVLQLAHAFEQLTQCWRQAPALRAPAA
>SEQF1086_CAE44817.1 transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHNAGKQVAAPLETPMPAATAALLAERADHPLYVASVEKGMRVLEAFDAARDSLSLTDIVQLTGMGKSAAQRFTHTWEAL
GYLAKDPQSRRYRLGPKVVELSYYFLRSDHLVSLAAPHLVALREHCGLAVNMSVLSGDDMIYLLRLPSRQLTLVEMLPGR
RMPAWSNSAGRMLLSQRDDASVRDLLARAAPQLYTPRTQTDPQALLAEIRQAREDGYAITQDQVLLNQMGVATLLRDERR
QPLAAISVTAAADEYPRARLVAEIVPQMLKAAYAICGA
>SEQF1086_CAE44818.1 DNA gyrase subunit B [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDQQNTTPENTGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGHCDDIVVTIHTDNSISV
TDNGRGIPTDIHKDDEFGRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSEWLRLTIRRNGQVHQMEFRQGQ
RVAPLTATGPTDKRGTEVRFLADPAIFTNIEYHYEILSKRLRELSFLNNGVKVRLVDQRQGKEENFAFSGGVKGFVEYIN
RSKSVLHLNVFAVSAESSAGGVLVGVEVAMQWNDSYSESVLCFTNNIPQRDGGTHLTGLRAAMTRVLNKYIADNELAKKA
KVETTGDDMREGLACVLSVKVPEPKFSSQTKDKLVSSEVRPAVEDAVARTLETWLLEHPNDAKALCGKIVEAARAREAAR
KAREMTRRKSVLEGAGLPGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIASEQ
IATLITALGTSIGPDFNIDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELVARGHVYIAQPPLYKVKVGRDERYLK
DDQEEAQFMLQLALKDAELIPSQGAAPIRGEALNELARQYVLADAVISRLSRVFDVAALSALAEGVEIDLEDAERTKASA
QRLSDALHAASPANGVEVVAEYDDVAEKHRLAVRRMHHGNVRVSVLDADFVRGADYAVLAKSAKTFLGLVGAGAIVARGE
GDKRKEQFVSDFREAMQWLRGEAERGLSKQRYKGLGEMNPEQLWETTMDPKVRRLLRVQIEDAIAADEVFTTLMGDDVEP
RRAFIETHALSAGNIDA
>SEQF1086_CAE44819.1 DNA polymerase iii, beta chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQLVQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVGPENESTTVAARKLLDIL
KALPDTGEVKLGLASNKLSVQSAKSRFALQTLAASEFPTVAQPEQWDVSLSMPQRMLRHLFNMVHFAMAQQDIRYYLNGM
LLVFEPGRVRAVATDGHRLAHCATEADGIAERHEVIVPRKTVLEMQRLLEDSDEPVALDVAPGQIRFRFGDVELVSKLVE
GKFPDFTRVIPTNYTRQFSVSREALQGSLQRAAILTTDKFKGVRLQLAQHQMKISSSNAEQEEAQEEIDIDYSFEPLDVG
FNVSYLLDVLSNIKAENVQWSVMPDANASALITLPDDEQFKYVVMPMRI
>SEQF1086_CAE44820.1 chromosomal replication initiator protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKEFWQTCVSRLEQELPPQQISAWIRPLVPLAYDEAQAVLRVAAPNRFKLDWVRKNFSHQIEALAAEWYQRPVQVTFELP
GTSSAPRIPMAVPRPVAVSVPAVVAAVQQASEPAPPAPASADAANIVYERSRLNTDLTFENFVTGKANQLARAAALQVAE
NPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTGVRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQF
FSGKNRTQEEFFYAFEAMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAESEGVPMPE
EVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDVCKEALKDLLSVSNGQITVENIQKTVADFYKIKVADMYSKR
RPANIALPRQVAMYLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKISDARAKQAELNHTLHVLEQTLKG
>SEQF1086_CAE44821.1 50S ribosomal protein L34 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRTYQPSVTRRKRTHGFRVRMKTRAGRAILNARRAKGRKRLAV
>SEQF1086_CAE44822.1 ribonuclease P protein component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPRATLPAEARLHRPSEFAAALKGRRLARGAFFIVSASPCAPADDQPARARLGLVIAKRFAARAVTRNTLKRVIREAFRA
RRLALPAQDYVVRLHSKLTPASLTALKRSARAEVDAHFTRIAR
>SEQF1086_CAE44823.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIRRLLIAPIRFYRYFLSPWVGRQCRFTPTCSAYAIEAIERHGAWRGLWLAARRIGRCHPWSPGGYDPVPPGHGAGAQAC
CAHRHRTEPD
>SEQF1086_CAE44824.1 probable inner-membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDIRRTVLWMIFSFSLLLLWNNWQIHNGKPSLFGGPAPEAAATQQPKADANGTAASSTASIPSSPAAAPAAASVPGAAAP
AAAKSEQVVITTDVLRLTFDSNGAQLIRAELLKYPSSSQSDKPTVLMDRSADLVYVAQTGVVGAPQGESFPTHQTPFHLV
SSERSLTGDTLDVVFEAESGGLKVTKTYTLHRGRYDVDVRHAMANTGGAPLNPALYLQLERDGTDPAGTSSFYHTFTGVA
VYSEQDKFQKVTFSDIEKKKGTYIKQADNGWIGIVQHYFATAWIPAQGKQRTNELLQVQQNLYAARTIEAVGTIAPGSSA
NVDAHLWVGPQDQKAMAAVAPGLELVVDYGWLTIIAKPLFTLMTWLHGLLGNWGWTIVALTVIIKAVFFPLAAASYRSMA
RMKQVAPRLQALKEKYGDDRQKLNQAMMEMYRTEKINPLGGCLPMVVQIPVFIALYWVLLASVEMRGAPWILWVHDLSVR
DPFFILPAIMMATMFLQIKLNPTPPDPVQAKVMMIMPLVFGGMMFFFPAGLVLYWCVNNTLSIAQQWTITRNLERQAAAA
ANR
>SEQF1086_CAE44825.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE44827.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQDLNDLYYFAQVVEQGGFSAASRVLDVPKSRLSRRISQLEDRLGVRLLQRTTRRLRLTTAGERYLHYCQEMTASARAAE
DAMRQLQSAPAGPVVVSCPVSIAQQMLAPLLPEFLDAWPSVSVQLLVTNRRVDVIREGVDLALRVRTKLDTDAELVVKHL
GIASGTLVASPAYLQRHGTPETPQELASHRTLSFNDPQNEVRWPLTNQRGESVEVAVQPVLASNDFIVLTQAAVRGRGIA
LLPSMASEAELRRGELVRVLPDWRSPEGIVHCIYPSRRGMMPAVRAFLDFLAKRVPPLVRQSDTARP
>SEQF1086_CAE44828.1 hypothetical protein BP0499 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFPLLIRNLRHLLGLPVGADEPVTSLAIDEQWAVHIGCEDDMVTVLLPLGPAPDPLPGAALVNSLAQWPPVLLDLSEQGE
AILWAREHVGRLTAEQLHALLVRVAARAAALMAPAAAPPAPQDTAEVAGRKA
>SEQF1086_CAE44829.1 hypothetical protein BP0500 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLSNNVNPVVGLSYRPLPETPPSGQAAAHPSMRLLEPNNDEFVRSVASPRLHHSSEALREVKHDVRQFQASGDRSLQQLR
DLEVALNHWEASQPREFAKRGGLVAELRTAIDAYKQQLHEQAPSHANLDVKWLDGLRAGSMALQGDVKVWMQNLEDLHTR
RPDEFAARLQQSTDALYSHLEAQWAKQHGTPPTASDVAGMPQWQEYTAMLRERFAGLDTIRPNLTAEENGVAILKTQTQL
LALQRAQEALQASLADGVSHQGDVGLLRTQLLAGMVEGLIALQQADDDSALWSRPSAADSGGRLSVEAGAKASTDFEAPA
SKGELLRGKGISGEAVLEAFANIEMSVSGSRAGAAGEAEGSLRLYGESTARAEVSGSFEPFALSGSIGREEADGDTAASA
NPVLSLNVSAELSSKLGLEAQGSVTLGSLLKLDAEGRAEVGASAEVSGAAAIDKRSDGLSVRLEAQAEAFAGLKAEGTLT
ANLLHSKYADAHGLTASVTGSAANVGLGATAEGKLVASPGQFEMGGEVGTTLGVGGNIGWNSKVDVNASTAYAYELASAA
MARFDALRASQLDHDAKTSGNESQLNRLAANLQSHIDATSQKLDALNSASRIRKVDGFAAGDGAQAAAGLAAQMALVGTG
ADLSHDIKITALNLRA
>SEQF1086_CAE44830.1 C-terminal region of two component sensor kinase (partial) [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRKYYRIEEIDPPWPENLPGMPREPGRALSGMPEMPRPPYWPRSNGQPVFFDAVYRNDPVRAVAVVRDLYYRNQHRQVLV
VVAESIGKRVEAEASAQRQEVLRDTRMLALVALLVWWGVNWALRPLVRLRNDIRTRRPDDLTPLDATRVPSEVAPLVEAV
NHHIARHRRVLDEQSQFLADASHQLRTPLAIMLTQAQYALRERDPVRAQEGLRAIVDQLGRTRCLTEQLLSLAHASQADA
PPRQELDLNDVARDVVLQYLPLAHEKQQDLGWVDARGDEAEGASDTAVVPVWGSEVELHEALSNLVHNAINYAPAGAHIT
VSVVRYPGRAEVQVADDGPGIEPLLRARAFARFDRMAGDRHASSSGSGLGLSIARAYARRNDGDIELRDGEPNAQGGIGL
CAVFWIPLYDQSAPADEAEAFRRSG
>SEQF1086_CAE44831.1 integrase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGTYRKRGDTWRAEINKAGVRESKTFPTKREAQEWAAARETELATIAVGGITPKSVAQVLQRYCDEISPRNKGHRWERVR
IARFLKEEADLCAKLIHTISTADLGAWRDRRLAQVQPVSVRRDIALLRAAWGYARREWRNLKDDPWLDLTMPPEGRHRER
IYTQDEVDRLVLALGWEEGQKVVTARQQTAVCFLLSLETAMRSGELLSLEHSQVDLKKRVAQLDQTKNGDRRAVPLSSRA
VALFKSLAGLNDVKVFTITPALRDVYFRQGKAIAEVDGATFHDARATALTRLSKKLSILELARMVGHRDPRSLMIYYRES
AADIAKKLD
>SEQF1086_CAE44832.1 phage-related conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEDRFITHTEIASLLQLNPAHVRDRLTKRKDFPRPFIFGGARRWKYSEVEDWIDGRRQAPDGRRAA
>SEQF1086_CAE44833.1 phage-related hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPDLPYLALLGIAVGAVVVLALALHRWLNREIEKEEREE
>SEQF1086_CAE44834.1 phage-related conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MELAAKAAGMGVWPGTGFQAHMLFTRPAKADPDGKVAGIEWNPLTDDGDALRLAVKLRLWVHVDDYGGSARRPGDTWFGC
AAHKYGGIEAATRRAIVRAAAEIGAKMQEAAHA
>SEQF1086_CAE44835.1 phage-related hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MMENQHQKIKGYRDLSQAEIDAMNEAKALAEQCGALVQKLRAPVADERAPHIKALQDLRLGVEMDQHCMEDGDAKLAALD
AAITALRWSAGALQALNIEADKITLDGETRTVGDILDHADRALASAPVAGEAQPVIHQHGFAADNQRLRAINESLDKQLE
EVMTERDEYHDMADKLANAIAHHLLVEIGEHSSSNCPWMRALDAIENAAPQASAYGHKPEPLDTSPGHSAPQAPAGWRWT
LHPAGLHPDVYAAAAARDSAEDVRNAALEEAAQVLDRLHYENRRYHTKFRQAANAVRTLKSTPAPTAAEDSQASEAVRDA
DIPASLAQLVAAVKGMTKLYPHVWDRTDGGLVVFPENVARFDAAFDALRIAVGEAADDDETAVLAARKEGDGNAN
>SEQF1086_CAE44836.1 hypothetical protein BP0507 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFSLQEQTAILAHLNVRTERHGDEPAGGADLKISFTTGNGILSEFHPRLRHGLYKAEEAPNQAEMAVGEALTERIYADLI
DRVRLKHDLKGAKVLIGFGLGGSSDIQMDPVDVDGFQAELHEGGSVTLTFRVKCHPTGEQVKKLHEVLGNEITISVTPAI
EKQGALGLNLEPEAA
>SEQF1086_CAE44837.1 phage-related exonuclease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNRYILSPHEQGSDGWLPDRCGRVTGSRAADMLAMTAKKEWSTKRADYKFELAIEVLTGMPQGSDYTSKEMQWGIDQEPF
ARMAYEEASGNVAIESGFMYLPDVAAGCSVDGLFVEDGRRGVLETKCPKSTTHIRYLEAGTLPDQYRPQCLHNVWVTGAE
FADFVSFDPRFPEELQLFVCRFIPTAKELADHEKAVLQFLAERDELVVQLKRLAA
>SEQF1086_CAE44838.1 phage-related DNA recombination protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNNLAVITQDIYNARESFAAVLTDQSISFEKEAGFAIQVLQNNDYTLKVATGNRQSVINAVTNVAAIGISLNPAKRQAYL
VPRDGRICLDISYMGLIDPAVATGSIRWAQAELVRSADTFALNGFDAPPTHVFNPFSKERGEIIGAYVVVKTADGDYLTT
PMSRDEIDGIMNRSQSVKSGKSSPWKTDYGEMAKKTVVKRAYKYWPKNDRLSEAIHHLNTDGGEGLATTASAPVDPDLLP
RLRKAVDAARDAAALEKVWKDGLAEVRATRDMAIYNAFKSAVAARGAVLRGEAVPTEPPPDDGKTIDEPPRDPSDDGFGR
DDQGGIQE
>SEQF1086_CAE44839.1 phage-related putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSRRLIAYLRATRLDLDLAGYAAMVAALAVATGLIGPTLDARSTLTACEGCGKTAVAAKE
>SEQF1086_CAE44840.1 phage-related hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLPLTYPTECGTAAVVRPLTDAERLAELRRDLDADLHYALVAQRCVRWPYGDPELVAEALYAATIGDAQSEAAFSLLVRA
AARGESAVSVGTLFVEWTKLARARLLDTLVELTEDGQRVTFGSRQ
>SEQF1086_CAE44842.1 phage-related hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDTKATLKFEVTLADLRRDGACFEGYNKVVRAVQGREFSGDDSERESYIKFSHAEPVALTAILASNGLDDALWALRCVP
GVDRDARLFAVWCARQVEHLMTDQRSKDALDVAERFANGEATEEERAAARAAAWAAQKEMFIAMCEGRAPWQQTT
>SEQF1086_CAE44843.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHYYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE44844.1 phage-related hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEAKLIERVALNDEFQAACQRYAHGNGSSMAIAGEALRAAGMPELLQAAVLVRDYLHRNGTRQGDVPLALIEAIRATGAA
>SEQF1086_CAE44845.1 hypothetical protein BP0516 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKPLLVAALSATALLVGCAAKQPQLTRSEYLKVTQRTYEGKSAEEVLNAAEKLFRLADGDDFKFFHDDDSMSASRSWIVY
VVLAAAMGTDTWTVRTKEIPGGVRVSAALNTSAGSVLPMPTTGGDMSAGTTPGMGGNVPGTAIYDVFWARMDYLLGLSDQ
WMTCEESNRRVSTGAVWGPNDALCNGFNVKDDLPAELVGKIEKPKPSSTFNDG
>SEQF1086_CAE44846.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHYYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE44847.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPASTAPARYLAPDTLARPGGHYSHACVANGMVYVSGQLPIGPDGTKLADAPFEAQARQVLDNVAAALAAAGSGIDRLVQ
VRVYVDSVENWPAFDAIYAEWAGAARPARAVVPTGPLHYGFKVEVEAVALA
>SEQF1086_CAE44848.1 probable glutathione S-transferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAYDLWYWDGIPGRGEFVRLALEAGKIPYRDRAREPGEDMLADMRRRRDTAPFAPPYLVADGMTIAQTANILLFLGVEHG
LAPPDRAGRLWVNQLQLTIADLTAEAHDVHHPVAAGLYYEDQQDVALRRAADFRETRMPKFMQYFEQALDRPGGWLTDMG
RWSYADLSLYHVVEGLLHAFPRRMRTLMHRYPRLMTLHARVAELPELRGYLASDRRLPFGDGIFRHYPELDGA
>SEQF1086_CAE44849.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIPRNAKLAAGAGVLFVLILMLAFSSWFQVDQGERGVVLRNGKLVRVSEPGLDFKTPFIDSVSTVSVRDHTFIFENLEAY
SYDQQPATLRVSVTYRVPAEHVAELYAEYGTISNLQMRVLERKTPDAVKNVFGRYTAVRAIQERQKLGVDVNAAVLSAMD
GAPVQIVGVQVEEVGFSKAYEHSIEQRMLAQVQIETTRQQKETAMITAEIQVVKAKAEADARRQQFTAEADGIRLRGEAE
AASIRAKAEALVANTNLVSLNAVEKWDGVLPATQVPGAALPFIGIK
>SEQF1086_CAE44850.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGYFVLKASGTQYMFNLHAGNHEIILTSERYTSKASAQDGIASVQKNAPDDARYQRLTAKDGSPYFSLTATNGQSIGRS
EMYKTTQARDNGIASVKSNAPGAPTKDQTQA
>SEQF1086_CAE44851.1 putative metal-activated pyridoxal enzyme [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTTHAHPLDTLDTPAAIVDVARMQHNIARMQDRMNGLGVSLRPHVKTSKCTPVALAQLAAGAHGVTVSTLKEAEQFFAA
GITDILYAVGMAEHRLPAALALRRRGCDLKIITDNAGSARAIADFGRAHDEVFEVWIEIDTDGHRSGIKPEEAALLAVGA
ALHEGGMRLGGVMTHAGSSYDLDTPEALAAMAEQERAGCVRAAERLRAAGLPCPVVSVGSTPTALSAAQLQGVTEVRAGV
YVFFDLVMHNIGVCRVDELALSVLATVIGHQADKGWVIVDAGWMAMSRDRGTQKQKQDFGYGQVCTADGAPLAGYTLIGA
NQEHGIMAGGPAGEDVTTRFPVGMRLRILPNHACATGAQFPQYHALEADGGLQAWERAHGW
>SEQF1086_CAE44852.1 probable haloacid dehalogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSIATPTGYPRAVLFDLLTGLLDSWTAWNAAAGSEPAGRAWRAEYLRLAYGCGRYVPYEQLVREAARATGLPESAPAALE
AGWHELPVWDDARALLRALRPHCKLAVVTNCSRDLGRQAAGLLGVDWDAIVTAEEAGFYKPDPRPYRMALQALQVPADAA
AFVAGSGHDLFGTAAVGLRTCWHNRLGLARPQGAPEPELQSATLAVALPWLQAFRPAVR
>SEQF1086_CAE44854.1 putative integrase (Remnant) [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSGKFEGVRPASESSIEISFVYQGRTCVRRLRMKPTVANLKRAAEQRAAIVETIARGEFDPLVAPRRQ
>SEQF1086_CAE44855.1 hypothetical protein BP0526 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRAPFYLSEEDNMKTCIHALAAVSGDARDQRETDAEMRYGK
>SEQF1086_CAE44856.1 entericidin A anti-toxin precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNNRIRAALLAAITLVALAGCNTMSGAGKDIERGGEKIQEKAQ
>SEQF1086_CAE44857.1 autotransporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGSGPSGMNERVTVNQGARIETNASAAISVGTSGQVRIEGGAVVQSTVNTAASGQYAKTLEAASNNNISIQVNAQLLAKG
SASQSSALGLSGAGNTVTNHGTIRADNAAAIWVTANTANAANTIDNYGTIETVLNGGYANAIGSTRNNSATGAGVTVRNH
ANGRIVGNVKFEAGDDSVILDGGSTITGSLNGGSGNNSLTLKAGDGTLGRAIRNFGTITKQEAGTWTLNGQVGRNDNNLK
STVKVEGGTLVLRGDNSGATQGGVLQVSAGATADVTAASAMQSISNAGTVQFTQDSNAAYAGVLSGTGSIVKRGGGDLTL
TGNNTHTGKVVVEAGSLSVSAANNLGGAGSSVQLKGGALALKKTIVVNRGLTLDSGAQTLIIEPGTTTTWQGQVSGAGKL
VTQGGTLVLEHASNTYSGGTEINNGTLRAAHDASLGSGTLALKNSQLAATDSFTATRALTLAGNESIDVAATKILSWNGE
ISGAGTLVKEGQGTLLLRGTNQQNGGTTVNAGTLQISRDANLGRGALALNDGTLQSTGSFATSRAATLRGQATMEVDASH
TVTWNGELSGGGMLRKSGQGTLVLAGANTYSGGTVVEAGALRAGHEDNLGRGAITLQGGDLLAGGSFSSNRDLTLVRGSL
DVARDATLTWSGAISGAGDLVKKGDGRLTLTGVNEYAGQTVLRGGKLRVARDENLGRGALVLEDNTVFESMGSHAATRQV
TLKGAPKVETLDGTTLEWRGTVDGDGKLYKQGGGTLVLSGNNTYAKGVEVWGGVVQVSRDQNLGAANGAVTLNGGGLAAN
GDFTSNRQLELTAGAKAIDVAAGKDVTWRGVVNGAGALTKAGDGTLALAGANTYTGGTRLQGGTVQVSRDNNLGQAAGAV
TFDGGRLANTGSFATARTATLNKAGQIDTDRGTTLTWNGAIGGKGELRKQGAGTLVLGGANTYQGDTRVEAGTLQVSADA
NLGQGAVHLHDSRLATTGTFATSRRLELTGRGAVQAAAAATLDWRGTVAGAGTLVKEGAGTLVLAGDNQHAGGTEVRAGT
LQVSRATNLGPGALALENAALATTASFTATQAATLTGNAAIDTAAGTTLGWEGAIGGTGSLHKKGEGKLVLVKDNHHDGG
TTIHAGTLQVSRDANLGSGQSAVTLDGGALAVSAGFSSGREIVVGAGHGALSVTGGHTLQWQGQVGGAGALTKTGDGTLV
LEHDNTHAGGTRITGGVLRVSRDENLGEAHGMLTLDGGTLSTTAGFASRRNATVGNGGGRIVVADAATLDLQGDVAGAGR
LVKEGAGTLALGGTNTYAGGTVVEAGTLRVARDANLGGGALTLNNSRLHATAGFATGRDATLSGRASIDTDDRATLQWRG
TVNGAGRLVKQGLGTLVLDGDNRYAGGTEVNAGTLQVARDANLGAGDVALNGSSLAATASFATARTATLSGAAAIDTADG
ATLDWNGLLDGDGALVKQGNGTLALAAANRYGGGTIVKAGAVRIARDANLGRAGTGVTLDGGALATTADLATGRAATLGA
ANGTLDVAAGTRLDWNGAIGGAGALTKTGAGTLALNHDNQHAGGTLVHGGTLRIARDANLGAAGTAVTLDGGTLATTASL
APERALRVGARNGVLLPDAGTTLDWRGVVAGAGKLTKAGPGTLVLSADNRHGGGTAVTGGTLQVSRDANLGAAAGALTLD
GGTLLSTASFASARVATLDAAGGTFVTRDGTRLDWDGAIGGAGGLVKEGAGELRLGNANTYQGPTRIAAGRLAVNGSIAS
PVTVEQAGVLGGTGRIVGDVANRGVVAPGNSIGALTVAGNYAGTGGSLEVEAVLGGDAAPADRLVLDGGAASGVTPVVVK
PQGGVGGLTLRGIPVVVAQGGATTAPGAFRLAQPLVAGAYEYQLLRGAGDGAAAQAQDWYLRTSRVERDKAGRIVKVVPF
YRPEVALYAGTPMLMRMVGTEALGSYRERAGQPGAAAPEAGAAARRGVWARTFGRRFERSAGSEAAPSFNGSLAGMQLGA
DLYTRRSATRHADAFGVFGGYATARGDVRGLARGEIQAVGTSTLRAAQLGAYWTHTGPSGWYVDTVLAGTRYKQQTSSSA
HVGATSRGWGMMASVEAGYPWQLNPRWQIEPQAQLVYQQLGIANGADRVSSVSYKTPDALTGRLGTRLAGQYAYGKAQLR
PFMGVSLLHDFTGADTVTFAGVHSVRASRQNTAVDLKAGVDTQLGKSVGLWGQVGYGKSVGSGDGSDRGWSANLGLRVAY
>SEQF1086_CAE44858.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRLYWRMPTTTPALRPQDLTETAFAPYGWMLGKPLPAGDDVLRFSNPATDFWQEHVFDTGAGAGRETEVLWVNYRISQPG
FDTLEKHLLTQQAIVPLTGAIVQIVARSAFDGSPDLASLAAFVVPPGQGICMRPGCWHATRISGGEVTCLMLTRRSTTLD
LVRHLHGEPARESEIVAIVPHGLDLPARPTAEGPAPHGR
>SEQF1086_CAE44859.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYRIVSALAVSVTCLAGMGAAQADQGAAAYPDKPIKIVIPYSAGGGTDQFMRIVSERASRVLGQPITILNKPGGSTVIGV
NAVIGAAPDGYTLLVSTNTSYTLIPYVMSPPPYAPEKSLDYVATLGQTSMVLTANKTMPSDLKTVLDSARQSPGRYTYAT
YGVGSSTHLAGEVFMNDTGVEFRHIPYKGVEAVTALAGNQVDLMIDGINAAGTMLDAGKTQALVVLQRTRSQFLPDTPTL
VEAGYPEAAENVISYVMAAPKGTPAAVIDKLQNSFAEALRDPGVLAQAKAMRTEAAFKGPAQTQAFVDSQPALFKDIVEK
KNIKF
>SEQF1086_CAE44860.1 putative substrate-CoA ligase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQPPGHTWWDIIEEHARRFPERDALAHGDGAITYGELAARVRRCAAGLSARGIGAGDCVALLAPPTPDAMVCLLAAARLG
ALWVGLNPRYQPREMAYVIGHAQPKLVLSVREFEARRYADDLDAALATLAPQARRPDLLFYDSRASCDEAMLHALCDAPD
APCPAPFEDAAQPCMLVYTSGTTGIPKGVLLSQTALIYRSTVQARTFATQSHPVVINFAPINHIGGMHFRGLSQILAGGT
IIYQERYRPAEVMGLIEKHRVNMLMLGSTMLQMLIREPSFDMSIMRGMEWFIFSGAAIPMPILQRVKEHCPRIGSTYGLT
ESCGSVSYIVASDSLEAAAYTVGRAIPEGQLRVADEQGQPLPAGTQGELQVRGQYCMNGYLRDAAATAGAFTRDGWLKTG
DMAQRDDDGNFRLVGRIKEMYKSGGYNVYPREIEVVLEQHPNVLMSAVIAVDDELYQQVGHAHLILRPDTEVSEPELVQW
CRERMANYKVPKRIFVRNSLPMLSIGKVDKIALRQQH
>SEQF1086_CAE44861.1 probable transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNPLNRYHHILHAIAGRPGGLSLADLAAATGLPRSTTHRMATTLREIDYLDQDDASGNFVLGDGLIGLMRSSLAQDSKL
ALFDPALNFVVGRLEETAFCARLWNDKVDLVQAVTPTRKDQLYIYPGVGGRPLDKCSSSKAILAYLDPARIQALLEPLAS
STPGLRVDTLMQELDQVHRQGFAICDGEIDEGVLSVACPVMSGPARGLYSIGVVGPAARLKSHDLQEIVAVLHSAADLAA
AELLNS
>SEQF1086_CAE44862.1 probable enoyl-CoA hydratase/isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKEIISLEKTGAVATVTIDRGGKRNALSQEMVLRLTDIALELQQDTSVACIVLSGNQNEFSAGIDLGDAMRWSLDDKTQL
ERRAIALRGTRLCKAWEDLPQITIAAVEGMNVGGGIALTLACDWRAMGKSAFLFVPEVQIGIPLGWQTIPRLVNLVGPAR
AKQIVLLGEKMSADTALEWGVADFVVADGAACAHAQDLAARIGKMPELAVRMSKQSINAYANALNHLGSHMDVDQAMLCG
QTRDAVAVRDRYAR
>SEQF1086_CAE44863.1 probable carboxymuconolactone decarboxylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLDWNQYRSELMTRIGEIAKASPETVKGYQQLSAAGKQTNQLDAKTRELIALAVAVTTRCDGCIAVHAKAATDNGATKGE
IAEALGVAVALNAGAALVYSARVMDAVDAAQ
>SEQF1086_CAE44865.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE44866.1 arginase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIAASFPHGVSLIGAPTDIGAGQRGASMGPEALRVAGLVRLLERRGLQVTDRGNLQGAPNPWRPPANGYRHLNEVIGWNQ
LVHDAVSAELRQERLPILLGGDHSLAIGSISAVARYCRASGRKLRVLWLDAHADFNTNRLTPTGNVHGMPVACLCGNGPA
ALTSMAGRTPAIEPGWVRQIGIRSVDEGERNLVYDAGLEVYDMRYLDEVGMRAVMEAALAGLDPQTHLHVSFDVDFLDPE
LAPGVGTTVPGGPTYREAQLCMEMIADTGLMRSRDIVELNPALDVRNKTAQVAVDLVESLFGKSTLMRRRPGSA
>SEQF1086_CAE44867.1 ornithine aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNMPAPAATRRDRIEDELGAHNYQPLDVVLARGSGVWLYDTAGRRYLDCLSAYSAVNQGHCHPRILAAMVEQAQRLTLTS
RAFRHDQLAPLYEDLARLTGAHKVLPMNSGAEAVETALKAVRKWGYEARGVPAGQAEIIVCANNFHGRTLGIVGFSTDPD
ARGGYGPFAPGFTVVPFGDFAALQAAVTPRTVAFLVEPIQGEAGVILPPPGYFRQVRKLCSERDIVLILDEIQTGLGRTG
AFLAEAHEGIEADVTLIGKALSGGFYPVSAVLSNQAVLGIFQPGQHGSTFGGNPLACAVARAALRVLHDEGMIDNAREQG
AYFMQRLRALPGPVREVRGRGLMLALELEPDAGPARAYCERLMARGMLVKDTHGQTLRLSPPLIVTREQIDWACAQLAHV
LAHSAPGSSGGPS
>SEQF1086_CAE44868.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE44869.1 probable transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNLVAPMPETAQRKVAGTATERAYGELRKRILEGSLAEGAPIRQDEVAADLGISKIPVREALVRLQSEGLVVFTPNAGAT
VAVLTAADYVEMLDLRLAIECRALELAVPNMAPSDLAQARRLLDAYSRHENASEWSELNAQFHDCLYAPANRPRLLAMIR
SVRDHMGKLMRLRVTEAAGHDRSHQEHLKILAACEEGNAARAVALLRKHIEHTQREVQAYFRKA
>SEQF1086_CAE44870.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKGYARENRRRTLLAAALAGCLLAGGTAHADESGADKRPIRLIVGFSAGGYTDVIARILAEQLGHSLNRSVIVENRAGAN
GAIGATAVARSAKDGATVLLSPPGLITNTLISPELSYSIQDFAPVARVTSLPNMLVVSANSKYRSLAELLDGARKADGKL
TYGSGGVGSSNHLSMALLMRQANVQMLHVPYKGSSLAETDVMAGHVESMFSGAASAIPHVNGGRFHALAVSGDKRIGALP
DVPTVAEAGVPGYSHGTWLGLFVAAGTPAQAVAGLNQAVNKVMADARVQARMTDLGADASQANTVDEFTAFVQSDLAAQK
TLIGNASLSGN
>SEQF1086_CAE44871.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDRPAHRATANPPLRRGGGGAGAMNPDRLLGEPLRLPDSLWAATAPAAPALPSLDGRHAADVLIIGAGFTGLSAAIRLCR
EGRRVIVLDAAEPGWGASGRNNGQVIAGLKQDPEVIETLYPGEAGRRLVRFGSEAPGVVFRLIDEFGIDCAAGNKGWIQP
AFTRSGLRAVERRCQAWGERGVATRLLQADELARLLGTPRYRLGWLDPRGGHVQPLAYARGLARVALSLGATICGGARVE
ALRREAGQWLARCQAGEARAPSVIVATGGYADRLVPGLRTSIVPVRTAQVATRVLPEAMRREILPQGHVSSDTRQLLTSF
RLSPDGRLVMGGAGATAGLEHARIVPFLHRAGAELFAHLGKLDWEYHWSGYFAVTTDHLPHVHEPAAGMHVSLGCNGRGI
AISTALDIELAERVLGAPAESLSVPVSDL
>SEQF1086_CAE44872.1 putative 4-oxalocrotonate tautomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPTVRVELSPGRSAEQKTRYMQEVTRLTVEILKCPVESVDVIFIEIPPTEWAHGGKFYAQPPA
>SEQF1086_CAE44873.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSPKVGFVSLGCPKALVDSERILTQLRTEGYEVTPEYNDADVVVVNTCGFIDSAKAESLEAIGEAIAENGKVIVTGCMG
VEESVIRQVHPSVLAVTGPQQYEEVVRAVHGVAPPRQDHNPYLDLVPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPSMR
GDLVSRPVGDVLSEAERLVRAGVKELLVISQDTSAYGVDIKYRSGFWNGRPVKTRMTELCAALSELGVWTRLHYVYPYPH
VDEVIGLMADGKVLPYLDIPFQHASPRILRAMKRPAFEDKTLARIKRWREECPDLTLRSTFIVGFPGETEEDFQYLLDWM
SEAQLDRVGCFQYSPVEGAPANTLDNPVPDEVKQERWERFMEHQQAISTARLSTRVGREIDVLIDSVDEEGAVGRSSADA
PEIDGCVYVDSEQPLKAGDMVRVRVTDSDEYDLWGERIA
>SEQF1086_CAE44874.1 bacterioferritin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSILGVSDMEQSATQPHRAFAVDVKAIRAKVRRDIESGAVTEGYRADRATVLRLLNEALATEVVCWLRYKRHAFMARGL
SAEPVAAEFAEHAAEEQGHADRLAERIVQLGGEPDLSPVGLLERSHAEYVEGKDLKDMIKENLIAERIAIDSYRQMVDYV
GEADPTTRRLLEDILAMEEEHADDLSDLL
>SEQF1086_CAE44875.1 putative lysine decarboxylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKIQNICVYCGSNSGRQPEYIEHAQGFARELVKRGLGLVYGGASVGIMGAVADTVMAEGGRVIGIIPEALMKKELAHRGL
TELHVVQSMHERKTLMAQKADGFVALPGGAGTLEEIFEIWTWAQLGMHQKPCGLLNIAGYYDLLGQFLNHTVDEAFMRPQ
HRAMLAIDHDPAALLDHFASYVAPTVSKWIAPGEH
>SEQF1086_CAE44876.1 hypothetical protein BP0548 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTHAMPTQPAAPRTTACLLRDYFRAKDENRPLYMARAFAPDAVLKMALRTQAIAFPPESHGLAAIADTLSRKFGQTYDNV
YTFYLAHPGEHAVLPEFSCDWIVGMTDKASGEVRVGCGSYDWVFQAEPHLVKRLTITIESMLTLPADTAGPVFGWLTALP
YPWTDAQRVVASAPPIESLAPIMYWLRRDVRRADPTGGMA
>SEQF1086_CAE44877.1 probable haloacid dehalogenase-like hydrolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKYRLAAFDFDGTLADTLPWFESVMDGVADKYGFRKASAADKAQLRHRSTREIMAFLEVPVWKLPAIMAHVRQLMREIDP
AVRMFAGVPAALAQLKAAGLRLAVCSSNSLDNVRRVLGPQTGALIDDYECGADLFGKPAKLARLMARHGVERTRCILIGD
EMRDIDAARKAGVMAGSVAWGYNHVDALRARAPDEIFEQVADLAAVLAPGFPSFPPTP
>SEQF1086_CAE44878.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSDPTHRITDLDTLQARYGTPAPNSLTKEVDYLHPHYRAFVEAAPFVVLATSGPQGLDASPRGDGPGFVVIEDDRTLLL
PDRRGNNRIDSLRNIVADPRVALLFLVPGVGETLRVNGQAEISVEPALLARFAVDGKPPRSVLRVRLETVFFQCSRAIVR
SALWNPDARVDRASLPSAGQILGALSAGMLDGERYDRELPERVRATVY
>SEQF1086_CAE44879.1 methionyl-tRNA formyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRLVFAGTPEFARIALDALLAAGHDVPLVLTQPDRPAGRGLKLTPSPVKQAALAAGIEVAQPRSLRLDGRYPDEAAAARA
QLERVAPDVMVVAAYGLILPQWTLDLPRLGCLNIHASLLPRWRGAAPIQRAIEAGDAETGVTIMQMDAGLDTGDMLLERA
VPIGAQQTAAQLHDELARVGGQAIVDALAALAQGGLAPRRQPDAGVTYAAKLYKAEAALDCSLPAAVLARRVRAFNPVPG
ATIRLPGLDDPVKVWRAQALEQAAGGTSGAVLRADAQGIDIATGQGVLRLLELQKAGGKRQPVDVFVRGWQP
>SEQF1086_CAE44880.1 polypeptide deformylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MALLSILRYPDPRLHKTAKPVAVVDDRIRQLVRDMADTMYDAPGVGLAATQVDVHERVVVIDVSEEGNDLRVLINPEITW
KSDERQTYEEGCLSVPGIYDEVERAARIRCKALDQQGQPYEFEADGLLAVCVQHEIDHLDGKVFVEYLSNLKQNRIKTKL
KKAEREAERA
>SEQF1086_CAE44881.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTRQACLEADRRDPLAAFKDEFELPAGLIYLDGNSLGALPRGAAARAAQVIGQEWGQGLIRSWNTAGWFELPARLGNKL
AGLIGAGQDEVVMTDSTSLNIFKALAAALRLAQRAAPQRKVIVSERDNFPTDLYMIQGMIDLLRQGYELRLVDAGLSLEQ
ALDDDVAVVLLSHVNYRTGAMHDMAAVSRRAHARGALIIWDLAHAAGAVPVALDADGADFAVGCTYKYLNGGPGSPAFIW
VAPRHRDDFWQPLSGWWGHRQPFEMADTYVPAQGIRRYLCGTQPIVSLATAECGLDIALRADIAQVRAKSLALGDRFIAL
VESRCADHPLTLATPREHARRGSHVSFLHPQGYAVMQALIARGVIGDYREPELLRFGLTPLYLSHADIWDAVEILREVLD
TRAWDRPQYRERAAVT
>SEQF1086_CAE44882.1 leucine-responsive regulatory protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHEYANQFEQHERKLPMQLDAIDRRILDILQTEGRLSNQDLADRVALSPSACLRRVRALEDGGVIQGYRAVLDPRCLGLD
FEAIVHVSLDQSQAGWHEAFVARLAGLEEVRQASIVTGSSNYVLQVRTRDLAAFSAFVVDKLNGIAGVREIHSHIVMRKV
KDCGGVLPVGPAGLAGP
>SEQF1086_CAE44883.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPLTHTRAELSAWLRLSQEPGVGPAAAYALLAALGMPEQIYAQGSATLARHVPQDVARQLRAPLSDEAAALIEQTLQWAE
QPGHHILTLADPAYPQQLLTIADPPILLYVNGDPACLRRPAMAVVGARNATPGGQDNARAFARHLAGQGWCIVSGLALGI
DAAAHEGALLAGEQGAGTVAVMGTGIDRIYPAAHRDLAHRIVQHGALVSELPLGTGAQRHHFPRRNRLVAGLARGVLVVE
AARQSGSLITARLAGESGREVFAIPGSIHSPLSRGCHALIRQGAKLVETVQDIADELGGAGPAASARTAPPARPAPPHPL
LDALGFDPLHLDALQARTGMDAASLNAQLLELELDGRVARVEGGRFQRLR
>SEQF1086_CAE44884.1 hydroxymethylglutaryl-CoA lyase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQPSRVKIVEVSPRDGLQNEKEFIATDIKVELVDRLSAAGFQNVEAASFVSPKWVPQMADGAEVMARIARRPGTIYSVL
TPNMKGLEGALAARADEIVIFGAASEAFSQKNINCSIAESIARFEPVAAAARQAGVRVRGSISCALGCPYQGEVPVEAVV
DVARRFLALGCDEIDVADTIGVGTPRRVREVMDAVTRVVDPARVSGHFHDTYGQALANILAALETGIAIFHASASGLGGC
PYAKGATGNVATEDVLYMLRGLDIETGIDFDAVVDIGQWISGHLQRKGSSRAGNAVAAKRAA
>SEQF1086_CAE44885.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNNLFAAPTPEEHAALLQEIGPLPLSGQAWPDWVRILAWIVLAVIGVQIVTTAIGLPPGQVNPILAGTIILCFLGLALVS
WHMQISVTRIDESGLRQTWITRREVAWQDIQFAKFVPLLFSKRLVVFTRHGRPIVFQGGTRDLQVAFAKISLLYRRKR
>SEQF1086_CAE44886.1 amino acid-binding periplasmic protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKIAQGLAAAALLAGMVAGAQGATLDVVKKRGTVVCGTTTGFAGFSAPDKQGTWRGLDVDLCRAVAAAVFGDASKIKVVP
LNSQQRFTALQSGEVDVLTRNTTVTQQRDTALGIIHAGINFYDGQGFMVPKSLGVKSAKELNGATICLQTGTSNENTLAD
WARANQVSYKPVVIETFNEVVNAFASGRCDVFSTDASGLASIRISRLEKPDDYVVLPEIISKEPLGPFVRQGDDAWLNIV
RWSLSAMIEAEEYGVTTANVDEQLKSENPNVRRILGVTPGAGANLGLDEKWAYNIIKQVGNYGESFERNVGQGSPLKIQR
GLNAQWTQGGLMYALPIR
>SEQF1086_CAE44887.1 probable aminotransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPLAAPDYAFAAPFQHPPASPIRSLMPYAMRPGTISLAGGYPAQELFDVEGLAAASRQVLERLGACLQYSNIDGQASLRH
ELARLSAARGLHCDADTELAVTGGSQQALALLARVMLQPGDAAVIETPAFPNSVQALRYTGAAVHTVPSGPSGIDLDALD
ALAARVRPKMVCVVASFSNPCGATISRERRLRLLELAVRHRFLIVEDDPYGELRFAGETVPPIAALAEGQARHWAVYISS
MSKTMAPALRIGWVVAPAEVRRRVVGAKAADDMACSAWTQEMVAQYLADGRYAQHVPRIRAAYGARCDAMAAALQRELGD
RVVFRKPEGGMFFWARLNGAIDATRLLPYAIEHEVVYVPGKAFYADPAQADPHALRMSFATMNETQIAQGIVRLGRALQA
CEANAPVSISLAA
>SEQF1086_CAE44889.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHKHAKRLLTLAALTFAAGAAAQSWPSQPLRWIVPYPAGGGTDVVARTVAGSLEKPLGQTIVVENRPGAATIIGATAIAQ
ADPAGYVVGTADSGTLAFNPSLYAKLSYDPAKFTYIGGIARFPLMLAVNVNSPYKSVEDVLQAARKEPAKLTAASAGAGS
PHHLALELFKQRANVDVLHVPYKGAAPAIQDLLGGQVDMMFIDLAAGLPNIKAGKLRVLGTATPERLAVLPDAPTMAEQG
VADFTAYAWQGLVGPAGMPEAAVKKLGGELEQSLKSPAVSQKLLDMGVMPMPMTPQDFKAYAEKERAAWADVVKKANIRL
E
>SEQF1086_CAE44890.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNIRKWGVGAVLGLSVATTAWAADFKVGQVEVDDLWVRASAPGQANGAGYMEIENDAKAADRLVSVSSPAAERVELHNVV
TENGVAQMRQVDGVAVPADGKARLAPGGYHVMFLKLKAPFAEGGEVPATLKFEQAGEVAVKFKVKPLGHNPGMAGHDHGH
MKH
>SEQF1086_CAE44891.1 probable LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLDHGNLRALAAVVREGSFERAAAALSVTPSAVSQRVKALEDRMGRLLVQRTVPARATDDGQVLVQLAEQAALLEHDAL
NRLGVAEDEVPHASIPVAVNHDSLETWFVDAAVRFAARSRATLDLQSEDQDHTAALLRKGAVLGAVTTLADPVQGCRIHA
LGSMRYVACCTPAFHQRYFAQGVSARTLASAPVLVFNRKDALQARYAHRIIGRAAWEPPVWWLPSSRAFVQATLGGLGWT
MNPLPLVQAELDAGQLVPLRARAWEDVPLYWQHWRVNSQAMEALTDAVLAAARALVRRR
>SEQF1086_CAE44892.1 probable transporter [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFTLSVPAYVTAWASGAATGLGLFAVVGAQSAFILRQGLMRAHLLSILAVCALIDAVFIFGSVWGLQTLTGWFPWLIQAI
LWFGVAFLAWYALQSARRALRSDGGLEVARQAIPSRGAALLGAIGFSLLNPHFWLDMMVVGSLAHGFADARLAFAAGALT
ASVVWLAVLGVGSRLFAPLFSSPRAWRVLDGLIAAVMALLAARLALGGLAG
>SEQF1086_CAE44893.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE44894.1 putative dioxygenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTARVGRVDHPVVAVHDLDRTSQQYRKLGFVVPPSGKHQEWGTENLCIMFPGDYLEIRGIGDPNKFLAGVDKFLAKGEGL
YSVAFNAASAQESYQAGLAAGLEIEPPRHLNRKLVLEDRTLDLHFETVMLGHDLYPGLTHANLCQHLTADTLRQPGWTDH
PNGVVAFGRLVGMVSDFDAAAAAYTRLIGAENVTRGDDHILLDFGAGADIELIGPAEAQRRGDAQPQLGDAYLASATLLV
KDAAATAALFEANGVRFTRQPGGELKVDPADACGAHLYFKQA
>SEQF1086_CAE44895.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTPLRVGIVGCGVLANAMAGHLARQPRPVEIVGCLVRDPGRARGALPCHGSWEALLAQRPDVVVECAGQAALAQYAQAI
LAAGVDLVPASVGALADDALRGALLEAAAAAGARIRIPSGAMVGIDGLAAARHVGVAEVLYRGTMPPVALQRYVSGPLPE
RGLAFAGSAREAVARFPKNVNLTGTIALAGIGFDRTRVEMLIDPDATANVHELLARGEFGDFHARVSGLRISESSPSSRI
VAGSLAQAALGSGFLALS
>SEQF1086_CAE44896.1 putative amino acid efflux protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTLATLALFVLASGLIIVTPGPTVLLALSNGSRHGVRRACWGMAGAVLADLVLVAAVAGGLGMLLAASEPAFQALKWIGA
GYLAYLGWRLLRSDAALVLPAPAAGGGDSGAGALFSRSFLVALTNPKALLFMSAFLPQFIDPAAALAPQYGALALVLAVL
NLAAMLGYAALGARLVRALRTGGLRWINRLCGGMLVVLAGTVALYRRAG
>SEQF1086_CAE44897.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPSSVDSSVLAPPLSAVLLGAAAAVQAVRKGRSLTDALAETPPALRPAVQAISFHAMRQLGWADAVAETLVRRSPGPLFD
ALLRVALSLLRPAPGAAAQPGAPQYAPHTVVDQAVTAAAGQRKLAAYKGLLNASLRRFLREREALQDSVAERPAARWNHP
RWWVELLERAYPDQWRGILAGANVPAPLTLRVNRRRATVEQARQALAQAGVAAAPVGDAGLVLAEPRPVPQLPGYGAGWW
SVQDAGAQLAAPLLAPADGMRVLDACAAPGGKTAHLLELADIDLLALDADVQRLERVDQNLERLGLRTPRVRLAAADASD
LDAWWDGRPFDAVLADVPCTASGIVRRHPDIRWLRRAKDVPRTAALQARIADALWRTVAPGGRLLYVTCSVFPAEGREQA
EAFARRHADAAPLDAPGQLLPVAIDATPQAQHDGFFYALFAKRT
>SEQF1086_CAE44898.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLLRICRMSMILRLFVALLLVFCSFSPITSGLAHAADPHVQRIEPLVRDGKLELSADVHFELNDQLRDAAQRGVPLYFTA
DLQITRSRWWWFDHTLVDKSITWRIAYNALTRQWRAGAGELSLPVASLDDAMDLVRHIRNWQVADASEFDPGVRYGGQLR
VRLDTSQLARPFQVNALNSSSWSPATPWAEFSFALAEPARDPS
>SEQF1086_CAE44899.1 putative two-component sensor kinase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRMFLRLALVVGGVSGLALLGLLAWSTGNASRFARYYDTLLILNGIFAFALFVWVVALTVRLARQIRRRQFGARLTARFA
LAFALIGVVPGALIYTLSVQFMSRSIESWFNVRVDSALESGLNLGRAALDSQLADMDVRARAMAAELNNMSDNDIPLALT
RLREANGAQEATVFTGSGRILAFSTNTYGQLLPPSLPATLLNQLRLARGYSAAEADDPAIPGAEGGLHLRVVIPLSAPAR
FDGILGGSAEPRWLQLMHAVPDQIAHNANRVQQGFRDYQELALSRLGLRKLYGITLTLALLLAVFAAIAVALSLSKRLVR
PLLRLAGGTQAVGVGDFRPLPEPPERDEVGQLTRSFNAMTRQLEEARQMVESNRRQLERSNVYLESVLSNLSSGVIAFDE
GFRVTTVNQGAQTILQADLRSVIGRPLETVDGMLEFAQVVRQAFAAHAAVGSERLHWQQQFEITPGLDETGGQPVTLLAR
GTHLRVDGRGNGYLVVFDDITEVISANRTVAWGEVARRLAHEIKNPLTPIQLSAERLAMKLADRLQPADAQMLIRSTNTI
VNQVGSLKQMVDDFREYARTPPAVMQRIDLNALVADVLSLYGWDPGDGGGRGAARVLNLDVELAPGLPDIEGDPTQLRQV
IHNLLSNARDAVAEQGGEGRVKVTTQIVQSEQPDGGQQRAVRFTVADTGPGFPPQVMQRAFEPYVTTKAHGTGLGLAIVR
KIIEEHGGRIDLANRKEGGARISILLTRLALPSDTMDATAQKKDNAATQ
>SEQF1086_CAE44900.1 putative two-component response regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARILVVDDEVGIRELLSEILYDEGHTVELAENAAQARAARLRMRPDLVLLDIWMPDTDGVSLLKEWASQGLLDMPVIMM
SGHATIDTAVEATRIGAMDFLEKPITLQRLLKTIEAGLARVRAPRAAPPLAHAAAAPVAVALEDELDPPQPFQAPVEAPA
ASNGQLGSISLDQPLREARDEFERIYFEYHLVRENHSMTRVSERTGLERTHLYRKLKQLGIESARKRGT
>SEQF1086_CAE44901.1 Trk system potassium uptake protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKILIMGAGRVGTSVAENLVSEQNDITVIDTDVGQLRYLQDRFDLRVVQGDGIQVSVLESAGADDTDLFIACAASDAANL
VACKIAREVFNVPRRIARIRMPEFADHPELMSDEGFAIDALISPERSVTTYLHSLIEFPEALQVVEFAGGRVSVITVRVG
HGSPMAHHPVDELREVWPDVTARIVDVLRDGRPLHAGTGTVVAPGDEVVLAVDTRHARRAVRQLREAEKTVHRVMIAGGG
NIGLRLARQLAEEGYSVRIIEHDAKRCEYLAAELPDNVLVLHGNGTDEALLERENIEDMDTWLALTSDDEDNIMSSLLAK
RLGARKVIALINRQAYGELMQGSHIDVAVSPSQATMSELLRHVRRGDVVAVHRLRQGVAEALEAVAHGDRSNSRVVGRAV
GKIGLPKGASIGVLVRGDEIIVPDADTEIQSDDHVIVFVPSRRQMPRVEKLFQVSASFF
>SEQF1086_CAE44902.1 Trk system potassium uptake protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKRLLATFYVLGLTMVVFALTMVIPLAVAYIGQDAGFTAFLEGFLLALGIGAGTWLATRRGRSELHARDGFLLVSTVWAA
LPALAAIPLLLYYDDVGIPLSFTDAYFEAMSGLTTTGATVLSGLDALPASINLWRATLIWIGGMGILVLAVAILPLLGVG
GHQVVRAETPGPMKDERLTPRIASTAKALYAVYFGFSMVCLLAYRAVGLSWFDAWCHMATTMGLGGFSTYDDGFAHFDSL
SVELVAIVFMTISGINFATHFNALRQRNWRAYVVCPQTIPYLTVMLGAGLVISVFLYIKGVYGDPWEALRYGMFNTISVA
TTTGYANVDYASWPLFAPLTMLLLSAFVTSAGSTGGGIKMIRIILLVKQARNELVTMLHPHAVSPVRIGSRVVDQRVMAS
VLAFMLVYGLSVGVLSSLLLLSGLDLITAFSAVMAMINNTGPGLGPVGPMGNFSVLNDFQTWVCTFAMLIGRLELLTVLV
LFTPLFWRK
>SEQF1086_CAE44903.1 probable MarR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFDPAKQVLWSRPGYLVRRLNQIHYALFYEECKTQNVTPVQYGVLTALSLSPWLDQTAIGMELGLDRTTTADVIKRLQER
GLVERRVNPNDKRSRQAVITQEGLRIMGLLQGGMARAQQRLLEPLSPCNREIFMKLLSTLVDANNQYSRTALKAM
>SEQF1086_CAE44904.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNALDLDVLQHARDWLASGRRVHLVTVVQTWGSAPRQAGAMLAVRDDGQVVGSVSGGCIEDDLIARARAGTLPERAERLT
YGVTRDEATRFGLPCGGTLRLVAEPLAPRDAWLDEVLQAIAEHRLVRRTIDLHTGAAALEAAAPAEGPDFDGRMFRAVYG
PHWRLLIIGANQTAQVLADIAATLDFQVIVCDPREEFHAAWHAPHATLVATMPDDIVLEIGTDERTAIVALTHDPKLDDM
VLLEALKSRAFYVGALGSRANQEKRRERLRLFDLGDEDIARLRGPVGLPIASRTPAEIAVAVAAELVWVRNTLGDREPSG
APLPAALAPAR
>SEQF1086_CAE44905.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MGILLAGGQGRRFAAASGGQDKLLARLADGTAVAVRAAAALREATDAVVAMVRPESAALAALLRGQGCHVLESEQASEGM
GASLAAAARFLLAGPVPNMPQRADVCLVALADMPWVRRDTLSAVRAAACADGITVPVHQGRRGHPVAFGRSLWGELAALR
GDVGARELLRRHRVAAVAVDDPGVAADVDTPGDLAGDRA
>SEQF1086_CAE44906.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTKVRKIAFEEHFTAVGFGDYSKAFVQHLDPGFAAELGARLTDFGAGRLAEMDAAGIDYAILSQTGPGVQGEPDAAVALR
RARENNDFLAERIARHPDRFGGFATLPMHDPKTAAAELTRAVRELGFKGSLVNGHTNGVYYDDPAYDAFWEQMQELDVPL
YLHPFDAYVLPHAYKGHPELAGATWGWGVETGTHALRLLFGGVFDRFPKLKIILGHMGEGLPFQRWRFDSRFAAYPYGVK
LQRAPSEYIGSNILITTSGVCSHPTLVGAIAEMGAEAVMFSIDYPYESTALAVEFIESAPLDAATRDLVCYGNAARLFKL
>SEQF1086_CAE44907.1 maleate cis-trans isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQKTYRIGQIVPSSNTTMETEIPAMLLARQQIRGERFTFHSSRMRMKKVVKEELAAMDAESDRCAVELSDARVDVLGYAC
LVAIMAMGRGYHRQSQARLTAHTAANGGEAPVITSAGALVDALKVMGARKIAVVAPYMKPLTELVVDYIGNEGYEVVDYR
ALEIADNLEVGRHDAGRLPEIVAGLDYREADVIVLSACVQMPSLGAIAKVEAQTGKPVVTAAVATTYAMLKALGLEAVVP
GAGALLSGAY
>SEQF1086_CAE44909.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPVSDYEMIRAWTQVLRLSRLQAGQTVTVLTSAATHPQTLGTALVAAQSLGAVVNRLDLPPVNGEKALSRDALAYLGTTP
LTGNKAAIAMLKASDLVLDLMTLLFSPEQHEILQGGTRILLAVEPPEVLARLVPTEGDRQRVKAAAARIAGAREMTVESE
AGTRLRCGLGEFPAISEYGYVDEPGRWDHWPSGFALTWPDEGSANGTIVIDRGDILLPQKSYVSEPIVLTVENGYATRIE
GGLDAEMLREYVATFKDPQAYAISHIGWGLQPRASWTTLGLYDREATIGMDARAYEGNFLFSLGPNNEAGGSRTTACHID
IPLRRCTVRLDGREVVREGKVLD
>SEQF1086_CAE44910.1 putative isochorismatase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSNDLGSYERQGFGAALPLKAPYGLLIVDFVNGFADPAQFGGGNIAAAIETTRTVLAAARERGWAVAHSRIVYADDDADG
NIFSIKVPGMLTLKEHAPASAIVPQLAPQAGEYVVRKSTPSAFYGTMLAAWLAQRGVQTLLVAGATTSGCVRASVVDAMS
AGFRPLVLSDCVGDRALGPHEANLFDMRQKYAAVMTHDEALAKTK
>SEQF1086_CAE44911.1 probable ring hydroxylating beta subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQTFFPPRTIDPARAIALKLEVEEFNADYCAALDGGQVESWPDFFTETALYRVTARENAELNLPVGLVYAEGRDMMHDR
AVAISRTQMFAPRYMLHMVSNTRVTSETPDGEIAASSTFLLMQTLVEGPTTLHLAGSYHDRFVRENGTLKLQERQVIYDT
AILANDLVYPV
>SEQF1086_CAE44912.1 probable Ring hydroxylating alpha subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYQSQTVIGRTLAAKDAPLSECAWPQYALHFIPDWVYTNNAVYEQELEKIFRGKTWNFVALEAELPNAGDYKRSYVGAKP
VVVSRAEDGSINVFENRCAHRGAEFCRHNQGNAKEFVCPYHQWSYDLKGNLQGIPFKRGVNREGGMPKDFKNDEHGLRRL
HVTTRNGVVFASYSSEVEPIAEYLTPEILADFDAVFPGKKLKILGYYRNELPCNWKMYHENLKDPYHATLLHSFLVVFGL
LVAGNKSAMLVDSVHGRHGTMASAKSEDKYATVSEENKKEMRSFHDGLRLRDDRFLEFIKEFDSPWSVTMQTIWPNLIVQ
REMNTLGVRHIIPNGPDSMIMQWTMFGYEDDTEEMQRHRLRQGNLMGPAGFLGLEDNEAMKFVQEGVRRASTDVNVIKLE
SGKQGTSNTLISEAAIRSMYSYYREVMGF
>SEQF1086_CAE44913.1 putative ferredoxin reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDEIQSIVIVGAGQAGAVAAASLRQLGYRGGLTLVGQEAHPPYERPPLSKAVLQGTATHAEAAVHPAGFYAENDIALLTE
TAVAALDPAARTVRLADGRTLPYDRCLLATGGHARELPALPRGRAGVHYIRTLDDALDLRAALRPGVRAAVIGGGFLGLE
VASTARELGAKVTVIENGSRLLERALPAIVSDWLAERVRASGVDLRLGGAIAAIGDGPPYAITLADGTQVNADLIVVSIG
LAPEVTLARQAGLPLDDNGGICVDSQARTADPQVYAAGDCASQPRACLGTAARFESWQNANEQARAAAAAMLGLAPAAEP
YPWFWTDQYGCNIQILGLPQPGLRYVCRPQTDPQAAPRVLWIGLRDGVPCHGIAVNAGGDLRQLRVLFERGIPVDPHRLA
DPAEALKPLVKAWQAAIAVA
>SEQF1086_CAE44914.1 ferredoxin [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNWIKIATTDQLEDDEVMPVTAGEAKLALYRSEGEYFASDNVCTHAYALLSDGYLEDGCIECPLHQARFDIKTGKAMCAP
ATADIRIYPLKIENDDIYVDLQA
>SEQF1086_CAE44915.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQRRRFLAQAAGAAGAGLAAVGMPAMAQANPTVRWRMSTSWPKSLDTIYGSADELCKRVGQLTDGKFEIRAFPGGELVPS
AQNMDAVSNGTVECNHVLSTMYIGKNTALTFDTGLSFGLNARQHNAWIHYGGGLQQLRELYKKYNIVNHVCGNVGVQMDG
WYRKEIKSTADLNGLNMRIGGIGGMVLSKLGVVPQQIPLGDIYPALEKGTIDAAEWIGPYDDEKLGFNKVAPYYYSPGWF
EGSASITSMVNDKAWEALPPAYQAAFEAACGEQSMRMLANYDARNPLALRKLIAGGAKVSFFPKEVMDAVYKASQQLWTE
LSEKNPDFKAIYPGWKKFQEDEAGWFRVAENALDNYTFAAVARAQAK
>SEQF1086_CAE44916.1 oxidoreductase, large chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTTEHTGAEVGAGSRQGVGARVPRKEDARHLHGKGNFVADMAMPGLCEVAFLRSPLAHARITDVRVPESVRDKVVLRSMM
GDARDIAADSTLPTYQPSVQPPLASGKVRFVGEPVAMTFAPTRAEAEDHAELVEVDYDDLPVYADVAGAQQATSDLVHEH
WRDNVFVTLNADRDFDEHAARAEVVVRRKIDLARQCMVPMEGKAVLAYWDHQADQLVVISATQVPHMIRSVLAQCLDLEQ
GRVRVVSPDVGGAFGYKCVLQQEELCVAWLAKTYKRPFRFIEDRREHLTAGANSREHHYEMTAYADKRGKLLALDARITI
DGGAYSVWPFTIGLEPDQAVGNLPGPYGFRGYRCETRCVATNKPGFVPYRGRTGVCFAIELTMDAVAREVGREPWEVRLE
NLVQPEQMPYVNVTNKHFDSGDYPASLRKALEMIDIDGVRTRQARGEADGRRIGVGVATYTEQAAHGTSVFAAWGTPVIP
GFDQATVRVTPDGGLEVRVGVHSHGQGMETTFAQIAHEILGIDVARIKVLHGDTGQTPFSTGTYASRSLVMSGGAVSQAC
KRLLPRMRHIAAHMLGVADDAVTLQDGIYRAGEKSVATGDVADAWYLRPQLLPPDVDPAGLEVNVGYKPKVDTGCFTYAS
HAAVVAVDPDTGAVEILDYVVVEDCGTMINPMVVEGQTIGGIAQGIGTAFYEETPYDANGQPLASTLADYMLPGPTEVPN
MRLHHFETPSPHTEFGAKGMGEGGAIAPPAVLFNAVNDALRGLGAAELSRTPLTPIRVLQAIAQGAGEAA
>SEQF1086_CAE44917.1 oxidoreductase, medium chain [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKAAQFEYFRAESMQQALQWLRQHDGRAKLMAGGQSLGPMLNLRLARPPVVIDISGVPALREVGERGGRVRVGAAVTHAE
IEDGVHAALRGSALQQVATGIAYRAIRNRGTIGGSLAHADPAADWVLTMVALGADIEIAGVDGERMVPAESFMQGAYTTV
VGEGELIAAVHVPAMTDGARWGYYKFCRKAGEFAEASCAAWFEPARWVARIAVGALDGAPCLLPGLADAVARQGAAALQA
ERIDEAVAQAMPGKDALHRKLHATAVARCLKQALGVQE
>SEQF1086_CAE44918.1 putative iron-sulfur binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTMVQVTLEVNGRQVAHEASPRMHLGDFLRDQARLTGTHLGCEHGVCGACTVLVDGQPVRSCITYAVACEGRQVTTIEGY
DGDPVMARLRAAFTKYHALQCGYCTPGMLTTSRDIVLRMPDADEARVRVELSGNLCRCTGYMGIVGAVMSVLRDLREQPD
AAVQALRAAAADGRLPAPRGEQPIAFQPFTPSAPTAAQAEPRPAAAASPVGGKGNQIVDAFTVPFPAAEVWAFMVDLPAV
AACLPGAVIEETDSQRVKGKIAIKFGPMAAAFNGAARLERDEAAMRAVFRGAGQDSLSQSRATGDIAYQVEAVSENETRV
KVDLQYALQGPLAQFSRSGLVQDFVRRMIADFGKNVTARLRQPGGEALPQAQFNPVAMFFSVLWMRIKRWFGHGG
>SEQF1086_CAE44919.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEMQKAIGKWWRRAMGGIALLAAAGTAGAQAPEPLRVRLDWTPWGVQAAFHLAQQKGWYKQAGLDVTLEDSNGSVTTVQI
VGGSDRFDLGHAALASMMIARDKGLPVKAVAVFARHSDIGLLVPADSGIAGPEQLKGRKVAYTAGSLEAPFIDAFLARGK
LKKSDLELINVDAASKASTYAVGRADAAFSTIPFFLPVVSQNRPSRAVRFADFGLDMPSFGLFASEDKLRERGEAIGRFA
SVSARAWEYIYAGHEDEAVSAILAQRPQARLDRTVLRGQIDALRGYFGLAAGQRVGAPVPADWEQAVKTLSSVGLVRADA
KAADFYVPDLARPQRYDALVKP
>SEQF1086_CAE44920.1 probable ABC transporter, ATP-binding component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSVAAVSAAGVRKKYPGERGVQALETISIDVPAGRFVSILGPSGCGKSTFLRCVAGLETISEGELRVAGQPVKGPPDGIG
MVFQRDALLEWRNIRRNILLPVEFAGKPVARYRDKVDALLRLTGLAAFADNYPRELSGGMRQRAAICRALVDDPALLLMD
EPFGALDALTRDQMNVELQRIWMETRNTVMFVTHGIAEAVFLGDEVMVFSPRPGRVLETIRIDLPRPRPLAVRETAEFGR
YVRHIRGLFEQMGLIDEGGRAP
>SEQF1086_CAE44921.1 ABC transporter, permease component [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTATGRKCLHAAAGAVSLAVFLLLWEGLGRALEVRPIMLPLPSQIALELAAEWRWYADQAWYTLMTTVAGFAVAVVGGVL
IAVMLVSSRWCESFLYPLIVALNSVPKVAIAPLFVIWLGTGAEPKIAIAFLIAVFAVIVDTVHGLKSVPQDVLDLGRVLK
GSRRDFFFKVRLPGALPSIVTGMKVAVSLALVGAIVGEFVSSQRGLGYVIMSAQGTFDTVRVFAALTVLAVMGMALFALL
VWFERKATPWRTPVEGH
>SEQF1086_CAE44922.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MWALLALSRGIDALNLRVGRAVTWVTLLVVLVSAGNAVVRKVFHSSSNAWLELQWYMFGAMFLLTAGYTLLKNEHVRVDI
LSSRLPRHKQIWIEIFGVVFFLLPACTLIMVLSWPVFMDSYLSGEQSSNSGGLIRWPVKLLIPVGFALLVLAGLSHLIKC
IGFLRGQCPDPTAREGSKSAEELLAEEIAREALEREASVQEQRNNHEGR
>SEQF1086_CAE44923.1 putative membrane protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEFLIANLAPIMFATLVLFLLLGFPVAFALAANGILYGLVGIELDLLSPALFQALPQRVFGIISNDTLLAVPFFTLMGLV
LERSGMAEDLLETIGQVFGPLRGGLAIAVVFVGAMLAATTGVVSASVISMGLISLPIMLRYGYDRRLASGVIAASGTLSQ
IIPPSLVLIILADQLGRSIGDMYRAAMVPGFVLAGAYIAYVVIVSLVKPSAAPALPEEARRFREPNGSRGGRSLLVLMLI
SSLSAYVLGQWLENDTAPVDEQVVVSLLLWGLTAFVIAIANKVFRLKMLSALAERVTFVMIPPLFLIFLVLGTIFIGVAT
PTEGGAMGAVGAIIMALIRRRLTLDLLKQAMDTTTKLSCFVVFILVGSTVFGLTFRGVNGDLWVEHLLIGLPGGEWGFLI
VVSVLTFVLAFFLDFFELAFIIVPLLGPVADKMGIDLIWFGIILAVNMQTSFMHPPFGFALFYLRSVAPKDAYKDKITGK
IIQPVTTGQIYWGSVPFIVIQLFMVAAVMLFPGMVMHYKGGQSTVDPASVKIEVEGGYGGSVYGGGDATPFK
>SEQF1086_CAE44924.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEQIPFVSSAPNTLGIELELQLVDPRSFDLAAASDELLAQLANHPIADRVKPEITRSMIELNSSVHEHPAGLLAEMREMR
DVLCEAADAVGVGVTGGGAHPFMRWQDRAISDTPRFQYLAEMYGYLARQFTVFGQHIHLGVPSGDAAVRMVRGLSPYVPH
FIALSAASPYCEGVDTLFSCCRLNAVNSFPLAGHMPADVTDWYRFEAHLAQLCASGLAESIKDLYWDIRPKPEYGTVEIR
VCDTPLTVERACQLAAFAQALAVQVARDPEPSQQAWLAYRSNHFQACRFGLHGSYVTPDGQRVRLVDHLRALFERLAPVA
EELGTGDMLQTLRDEILRNGNDARWLRGQFLKVRELPLVVESMAQNWRGQGVQDTPPSAVRRRIRATSEPVGGVCALSTP
QGDPLPGWAERLH
>SEQF1086_CAE44925.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLPSSLPSLPIVAADVVRQFSRRGDLAQAQFLYGEVAQRMMGRLRYIRLQPAALLDAGCGAGASLPLLRDRFPSAAYTG
LDAAEPLLAHARQAWTPGGVAAWLGRLAQRGKPAVSFVRADLAASGLPPEQLDLVWSNLALHWHPEPHAVLAEWRRILKV
GGLAMFSCLGPGTLRELREALADAGLRTATPTFVDMHDFGDLLVENGFADPVMDQETLTLTYETPQRLLEDVRALGGNPA
RDRRAGLAGRAWLDRLHAALEARRGPQGRISLSIEVAYGHAWRAPARRAAPGETHLSVSAIGGRRAG
>SEQF1086_CAE44926.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAALGPATPRCPCCAVRLAPRARHCADCLRLRPAYQRVVAALDYAGPYRGLISRYKTACRHELAVALADLMLRAIRQADP
PLRGPCLLVPVPASAASLRRRGFNPAAELVAALAARLGWPLARTQLRPARVLAGRQTLRGRRDRLRGATGRWRALPVPAG
ATVALVDDVVTTGATAHCAARALLAAGAGRVIVLAAARTPASHG
>SEQF1086_CAE44927.1 rRNA methylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFHVVLVSPEIPPNTGNAIRLCANTGAQLHLVRPLGFELDDARLRRAGLDYHEWQPVQVHDTLPQALAATGAAAPRIFAL
TTRARTSLADMAFQAGDVFVFGRETAGLSEAHMALFGPAQQLRLPMRPGQRSLNLSNAVAVTVFEAWRQSGYAGSI
>SEQF1086_CAE44929.1 glycerol-3-phosphate dehydrogenase [NAD(P)+] [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSQARPATLRVAVLGAGSWGTALAAAASRRHPTVLWARDGAQAQAMAARHENTRYLPGVALPHALQVSADLAQALAHLAH
DPAHALIILGVPVAGMTPLCTELAARLPALGLQAVPLVWTCKGFEEQTARLPHETVQAALGAMPGLAAGVLSGPSFAREV
AQGLPVALTVASGSSAVRDAVTTALHGAAVRIYASTDVVGVEVGGALKNVIAVACGICDGLALGTNARAALITRGLAEMA
RFGAALGAQQETFAGLTGLGDLVLTATGELSRNRRVGLEIGAGRKLADILASGMTAEGVRCARAARDRARALNIELPITE
AVCAVLFEGLSPMTAVSALLAREARPESPTP
>SEQF1086_CAE44930.1 protein-export protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MADQDQTNQQAGSDAPSFNLQRVYLKDLSLEMPNAPHVFLEQEAPQVEVSINVGGQRLAETVFESTVTVTVTTRVNDKVL
YLVEGTQAGIFELANIPAEQMDPLLGIVCPTMLYPYLRANVADAITRTSLPALHLAEVNFQALYEQRLAEMAQQQPDAAN
GNDSGIILPPGATRQ
>SEQF1086_CAE44931.1 glutaredoxin 3 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQKVVMYSKDYCPYCARAQALLKQRGVADLEIIRIDQDPSQRDIMIERTGRRTVPQIFIGETHVGGSDDLQALDRSGGLL
PLLNGG
>SEQF1086_CAE44932.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDLLQFLIDKNNVFIVAVAVVSGIMLMLPALRKGRAGAAVGTSEAIQMVNQRQAVWVDVRPTEQFQAGHIAQARSLPAAD
LEKKAGALPKNKPLIVVCEQGRDAARIAARLRSQGFAEVSVLEGGMRAWFAAGLPVTQKG
>SEQF1086_CAE44933.1 phosphoglycerate mutase 1 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MYKLVLMRHGESQWNLENRFTGWTDVDLTETGREQARKAGELLKREGYAFDLAYTSVLKRAIRTLWIALDAMDAMYTPVG
INWRLNERHYGQLQGLNKAETAAKYGDEQVLIWRRAYAIAPEPLDLEDPRHPRFDGRYAKIPADQLPATECLKDTVARVL
PFWNESIAPAIRAGRRVLVAAHGNSLRALIKHLDNVSDDDIVGVNIPTGQPLVYELDEDLKPIRHYYLGDAAEIEAAMAA
VAAQGKAKKD
>SEQF1086_CAE44934.1 putative peptidase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRVAAGLLVWAAVAVAPPAAWAVSDLAGRQSEAERQQAALRDRIDALQKEIDTREAARKEAADALKESESAISRINLRLR
ELGEASRKAEAELAGLEKQVVAQQAVLQKRRAELADQLRTQYTSGLSPWTALLSGDDPQQLGRNLGYLDYVSRARAQAVH
ALREDIARLAALQGQADARRDDIQTLVAETSSQKAALVEQQKTRATLLAKLEGQIAAQRAEAGKLGRDDQRLSHLIDDLG
SAIARQAEEDARRRAAEEARRKEEEARQAEAARRAEAARQQEAARQAAAAREADARRQAETARQAQQARDAEARDAAAAR
EQAEAAARQGRGPVALADPDAAGLRQVEGGRLVDPQAAPPRETRPAARAEPAEPAPREAAPARTASAAPVGGGNGLRRGL
PMPVRGTIQGRFGVDRPDGGVWRGLVLRTAEGTPVKVVAPGTVVYAEWLRGFGNLIIVDHGQQYLTVYAYNQSLLKRVGD
RVAAGDTIATVGATGGQVESGLYFEIRHRGAPVDPAQWLAQ
>SEQF1086_CAE44935.1 putative carboxy-terminal processing protease precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSTRKFRGFGLVAIGAVAGILLSVGVSAVAQRGSPLPLDELRQLSNVFAAIKNNYVEAVDDKTLIGNAISGMVSNLDPHS
AYLDADAFREMQTATQGEFGGLGIEVGAEDGFVKVISPIEDTPAARAGIQAGDLIIKIDDTPTKGMSLNDAVKLMRGAPK
SPITLTIMRADRPQPIVVKIVRDIIKVRSVRSKMLDSNVAYLRIAQFQEKTGPDLARHLKELGAKGAPKSLVLDLRNDPG
GLLTSAIGVAGAFLPPDALVVSTDGRTPDSRHKYRATPSEYARGEGNYLNDLPGWVKTVPMVVLVNVGSASASEIVAGAL
QDHKRAKVLGNRTFGKGSVQVILPLSESTAVKLTTSRYFTPSGRSIQATGIEPDYVVADTADGDLFRLPREADLQRHLSN
QQSPDAEVKSNNDDNTEVAGKAFEFGGKDDFQLQQALNLLAGKPVQKGSARAQAKADIKPSEGKTQRMTITPTGVEPAKS
K
>SEQF1086_CAE44936.1 adenylyltransferase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNDQQLLRYARHILLDELGIEGQERFLAARVLIIGAGGLGCPAALYLATAGVGHITLVDDDVVELSNLQRQILHASDSVG
RAKAESGRDMLARFNPETQVEARVERLGGAALDAAVAQADVVLDCSDNFATRHAINRACVRHRKPLVSGAAIRFDGQVSV
YDLRDAQAPCYHCLFPEADDVEELNCATTGVFAPLVGIIGSGQAAEALKLLAGIGQSLAGRLLQLDVRSMQWHSVNVPRD
PDCAVCGQGGQAAEHARGDAAHCA
>SEQF1086_CAE44937.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE44938.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHRLIRSTLLAATLAALGPAQAADADGYPQGPISYVVPAPPGGLIDTMARTVAETMGRELKQPVVIENKPGGNTNIGIAY
VARAKPDGLTWLAVSSTLAVNATLFKQLPFDPEKDLIPVALFATTPMGMAVPANSPYSNVQDIIKAAKSGKVLNVGSSGF
GTPPHLALVLFQRLTGAKFNHIPYKGGAPSLNDLVGGQLDLIFTTLSESRSFIHAGRLKLLAVSSSERVKEFPSVPTTGE
QGLPDMLIAGWTGLMMPAGTPAPIVDSISAKLVAEVAKPAMKQKLEDLGYVVAPQDHARFTRFYRDEIRKWGDVIIQENI
ERM
>SEQF1086_CAE44939.1 probable transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MEKNRRGIQSVELGSRVLQALAQFGRPAGLTELAQECDMPPGKVHPYLVSFMKVGFVARDPASGLYELGHLALELGLAKL
HRLDPVREASQAIADLAAETGHGTGLVVWGNLGPTLIRLEEPAHPLHVNLRIGTVMSLVHTATGRLFAAYLPAKVVSRVL
EADPMGVHFGSRHQSRPAQEDYERQLSEIRSRGISRTLGSPIPGIDAFCAPVFDSMGHIAAGLLVMGPSATFDSDWDGQI
ATRLHACANDISRKLGYIDTPASPRAAR
>SEQF1086_CAE44941.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRHSLRIAVLAASALLGAVGPAHAYPTKPVTIVVPFPAGSQTDMVARIAGAELERRLGKPFVVENKPGASGSIAAKYVAD
SAPDGSTLLLTTAAIQAMNKSLFKQPSYDPVKDFTPVAQIATTSMMLMTRPDFPADNVEELVALARKDGNAMSAGYGSSG
AQIALALFQARAGTDVLAVPYKGIPNAVTDVIGKTITFTFVDVGNALRFQQGKQLKPLAIASARRSRLAPSVPSLSESLK
DYNITSWYGLVGPKAMPDSVAQSLAQALQASLADAATVEKLAVAGVEPAYMPPAPFGKHIELEVDNWARLVQLARIEPQ
>SEQF1086_CAE44942.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKIIDFRLRPPAMGFLNARIYTRPDIRNRFTRQLGFEPAPSAEEKSLELMFEEMAAAGIEQGVCVGRNSSVLGSVSNADV
AAVAKAYPDKFHPVGSIEAATRKEAMTQMQEILDLGIRIVNLEPGVWATPMHVDDRRLYPLYAFCEDNGIPVIMMTGGNA
GPDITYTNPEHIDRVLGDFPDLTVVSSHGNWPWVQEIIHVAFRRPNLYLSPDMYLYNLPGHADFIQAANSFLADRMLFGT
AYPMCPLKEYTEWFLTLPIKPDAMEKILHGNAERLLAQAGR
>SEQF1086_CAE44943.1 TetR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHQLKREALLREAIAAFNQKGFHATSLGDIATSLGVTKAALYHYFPNKHALLFEAFAEALRVGFEAIEAAERHGGSGLDK
LQMAVREYLQVTLSEMSRCVIITEEHALEPQDRAKIVEQRDRFEAKLRGFVREGIEDGSVIPCDPKLAIFSIFGAVNWVP
KWFSDSGNWSNKQLAKGMSELLCRAVARHPAEAFAPDIGKMRVE
>SEQF1086_CAE44944.1 dihydrolipoamide dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MASTMETDLLVLGGGPGGYTAAFRAADLGLSVVLVEQRPTLGGVCLNVGCIPSKALLHCAKALDEARAMSELGIEFSEPR
IRLDKLRAHKEALVAKLCGGLGGLARQRKVEVVTGTGRFDGPHSLAVSDGSRVAFKQAVIAVGSRPVRLPFLPDDPRIMD
STGALELKEIPRRLLVIGGGVIGMELATVYAALGARVTVVELTDGLLPGCDRDLVKPLAQRVASRYEAVLLGTRVSAAQA
RDDGIHVSFDGPQAPGPQVYDQVLVAAGRRPNGAAIDAERAGARVDEGGFIRVDAQQRTNVGHIYAIGDVVGEPMLAHKA
AHEGKVAAETAAGMRVANDARVIPAVAYTDPEVAWVGLTETAAQRDGIAYEKAAFPWAASGRALSLGRGEGLTKILVDPA
THALLGVGMVGPQAGDLIAEAALAIEMGAEPGDIALTIHPHPTLSETLAFAAEAYEGTLTELYLTRKKS
>SEQF1086_CAE44945.1 branched-chain amino acid ABC transporter, ATP-binding protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLEVRNLQVSYGAIDAVRGVTLTAQPDGITALIGANGAGKSSLMRAISGVTPARGGQILLDGVDITRMPPYERARHGIAH
AMEGRRIFHQHTVEENLITAWHFRKPKGNFKAALESVYGNFPILEQRRGAKAGTLSGGQQQMLILSMATLHQPRCVLLDE
PSLGLAPIVVSQIFDFIKQYCAQGGRVVLLSEQMASLALRVADFGYVLKHGQTVFEGTREQLASGAGGDLSSAYLGAGKA
RPVPTE
>SEQF1086_CAE44946.1 branched-chain amino acid ABC transporter, permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRPMKLLGQLLTNSWTLGVLAIALAVGAGHADTGTVQMWSFVIINILLAQGINLLTGINGQISLGHAGFFAIGAYVSAIA
LKSWGVPFPVALAMATIVASGVGFLLAGPAGRVREFYLAMMSLGFGLIVYELARELRGVTGGVMGMRGIPSSQIGTLQIF
GWSIDTVAYFRILLAVLLVVMLMLRNFVKSHYGRAFYAVHVSEIAAGSLGISQAAVKRAAYAISGGLAGLAGGFYAHMIG
YLTPESFGLMRSIEILVMSIVGGLGSLAGQVYGAVLFTYLPQKLQAFNDYQYIVYGLILVFIFTLLPRGLAGLLGTQTRY
SKYDQLRRAVAGQPAAPLGERPSHARRDAAQPLIRVEQVVMEFAGLRALAGVSLDLHAGSITALVGPNGSGKSTLVNVVS
GIYRPTSGRVLYKGQDIAGWPSHKVAQAGITRTFQDPRNVPSFTVRENILMGAHRRYRHGALAAAVNTAGARREEAAFLR
QVDALMQAAGLSEHADAIMSELPYGIQRLAEVARALASDPELLLLDEPAAGLSELESGHLIGLVRLARDHGVAVMVIDHH
MDFLAELAEDVVVFEAGDEIYRGDMDGMRADPAVIQAYLGAEEPAHA
>SEQF1086_CAE44947.1 branched-chain amino acid ABC transporter, permease protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDFFIQMIVSGLSVGAVYALIGLGLNLTFWTTRVLNFGQGSVLMAGAMLTAVMVGAGVNVFLAVGVSLLVTAFILWIVEL
VGVRPMRRMSGSMGWVVSTLGIGIFLQGMASWLFGTQAVAFPDVLFSSADTVEFMGAYISLQYIAVFVISVMIVCLMELF
LRHSIWGYGVRAVAHDRDLAALMGIPVYRVVVFSFLVSGVLAGIAGILVSQVSGTVDPNFGLHLLILAFVAAVVGGMGSA
FGSLVGGLILGIMEKLVGGYVSPAAAEVVAFVLLIGVLTIRPQGLFGKRETVKV
>SEQF1086_CAE44948.1 putative leu/ile/val-binding protein precursor [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSWYRKSTTCLAVAAAVLASGAALAADTIKIGMTSALTGPYNEFGEGNRRAVELAVEQWNAKGGINGKKIEIAMLLDDQL
NPDRAVQNIRAILDNKDIVGIIGPAGSGPMLAVIDMVQADGRPYMNPIAQTPVVTYPGEKTGEKPRPNVFSFALQNDIEA
VAMGEYLAKKFKRVGIIHESTAYGVTGVDYLAASIAKNGGAKPVATDSYNQGAQDMTAQVARMKRANVDAIAAIGLGKDL
AVLRRTMARLNVNVPLAASNGALGQPYQEGAGELTLGTLGTMIGAFGNPMRAPAADFAKAYKAKYGTDRWWGNDPENPQL
FMAISVSNGYDAANILFEGIRLANSTDPKAVIAAIESIKDYQGVNTAYTFSKERHHGIETDGVKVFEYVKKGDKIRLEPI
AQ
>SEQF1086_CAE44950.1 putative substrate-CoA ligase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFNLSASIAFHARRTPDKAAIVYRDQEIGYAEFHQRILQAAAMLHARGIGQNDVVALFMKNSAAFLELAFAASYLGAVFL
PVNYRLAAPEAAYILGDAGAKLLLVDEEFDAIVALETPKIVIDAQAQADSRRLGQPGLEIPPQAAVAETDLVRLMYTSGT
TSRPKGVMHSYGNLHWKSIDHVIALGLTASEKLLVVGPLYHVGAFDLPGIAVLWVGGTLCVHREFDPEAVLASIERHRLT
CGWMAPVMLSRVLTVPDPDRFDLDTFAWCIAGGEKTPESRIRDFTRVFTRGRFVDGFGMTETCSGDTLMEAGREIEKIGS
TGRALPHVEIRIADGAGGWLPANRKGEICMRGPKVTKGYWNAPEKTAEAFYGDWLRSGDVGYLDEEGFLFVTDRTKDMIL
TGAENVASSEVEAALYELPQIAEAAVIGVHDDKWGERITAVVVLNPGQTLTLEEIDRHCRQRLASFKVPRELKVVAELPR
NPSGKVLKRVLRDEYNG
>SEQF1086_CAE44951.1 probable acyl-CoA dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDFSLSDEQKLIVETARRIGEDYGVDYWHDLDRRKAFPQECWQAICDAGLAGVALPQEHGGSGLGMLDLALIVEELSAGG
GGATLGQLFMINPIFGGVPISKFGSEQMKRELLPALVGGKMNFCMALTEPDAGTNTLAMKSYAEAEPGGGWRLNGRKIWI
TAVDAAQKMLVVVRTSRQTEGARPSDGISMFIIDVEREGLSYSAIDKVGTQTLSACSVFFDNVRIEPHELVGTLDKGFRE
LLDVLNTERIVTTASLIGAGRLAKRLAVQYANDRKVFGGKPISSYQGLQFPLAQSHAELQCARLMNLKAAALCDQRLPYG
TEANIAKLIGSQAASHAIERSMQTMGGMGYAREFHVERLWSDARLFKFAPVSEEMILNYIAIHDLGMPKSY
>SEQF1086_CAE44953.1 probable enoyl-CoA hydratase/isomerase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSEQSILTEVRDHVGIITINRPKLHNALDTPTLLELERALTTLEADAECRVIVVTGAGEKSFVAGGDLVDLNSRQGLAHY
QEFAEDIHHVFRRFETSDKPTIAAVNGWALGGGTELLLCLDLRIVADNAAIALTEVNLGLFPGAGGTQRIIRQISPCQAK
EMMFTGGRISAADAVRIGLANRAVPAADLMAETLALAGQIAAKSPLVLKLLKRTLRDGADMPLANALAHEQAMIGLVLDT
RDAHEGIGAFLEKRAARFTGQ
>SEQF1086_CAE44954.1 putative pyruvate dehydrogenase E1 beta subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAELRFAHAINRALAECMEEDPMVFLFGEDIAEAGGPFGVTRGLHDRFGSDRIRDTPISEATMANAAVGAALSGLKPVLE
IMFMDFMTLTMDALVNQAAKARFMFGGQASVPMVVRTPHGGGISAGPQHSQCLEAWFAHIPGLKVVCPSNPADAYGLLKS
AIRDPDPVVFVENKALYAAKGEVPDDVGPIPLGQARIARAGRDLTVVSYGAMVHKVERAAEALARDGIEAEVLDLRSIQP
WDEAAVLASLRRTHRLLIVHEAVEAFGVGAEIAARMADIGFDELDAPIVRVAAPFVPVPFAPSLEAQYQPQEADIIAAAR
KLCA
>SEQF1086_CAE44955.1 putative pyruvate dehydrogenase E1 component, alpha subunit [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MARANKEQLLDAYQRMLGIRLVELRLGRLFADGEVPGFIHLSVGQEAVAAAMGMVLRPDDTVASTHRGHGHALAKGIDMD
DFFLELMAREEGICKGRGGSMHVANMSIGMLGANAIVGASIPIALGSALAHQVRKTDALAVAFFGDGAMAEGGLHESLNL
AALWQLPLLFLCENNGWAEFSPTHKQFVAPLDKLSAAFSIPHAKVDGNDVLAVMDAAQAAVADIRAGKGPRVLECITHRW
RGHYEGDPQKYRDSDEISGLDEHDPVARFEAVLDSKGVSQAQRQKVRDAVQAQVDQAVERARKGRPPVWETARTDVYTQA
EAR
>SEQF1086_CAE44956.1 probable transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPHFHFSWREKFSVFRMAAEPPEKLVGALVGGLRVLRYLSAAPAGVGVTRVARDLQLNSSTCYNFLKTLVYEGLVTFDES
TKTYSIALGLVELAKGVLEQGAYVRLIHPHLEEIARAHRVTATLWQRTSNERVVLVDRADNDSSVRVHMSVGQRLPMYIA
ALGRCMAANAGLDRDQLEQRFNALRWDDKPPFDEYLAGVQEARKNGYATDAGHYVKGVSTASAAVLDAFGKPVMAISAVG
FSAQFTGDALEQLGEDLHERAGRITRALSGGRAGADS
>SEQF1086_CAE44959.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNIGTSFPRISSRLAGALLATLAVAPMQAYAQQAYPSKPIEIIVASSAGGILDTIARAAAYGLERLGQSAVAKNLPGGGG
TIATAALARMPGDGYTLGAVATSHAINPNIYNKLAYDTGRDFTNITQMVELTNFLVVNPSVPASNLKEFIALAKAKPGTL
TYGSAGVGQSNHLSGELLQQDAGIKLVHVPYRGSAQALTDVIGGSVSAMFVDALSAEPYVKAGKLKLIAATGLARSPAYP
DYPTLAESGLPGFNGNTWLGLVAPAGVPKDIVAKLQDAVRAEFEDPDVRKRLISQGVIPVASTPQAFSAFLDSEMKRWAE
VIKVAGIEAN
>SEQF1086_CAE44960.1 probable acyl-CoA dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSLSFAFSSEHEAVRDTVRRLCQEELAPLVFEAEEQEAFPRRVFERWGELGLLGVRYPEADGGSGLDKVSDCIVREELSY
LSQAFASTWSAHTHLGIWPIWKAGTPAQKARFLAPALAGRKVAGFGLSEPDGGSNVRAMKTRAERVEGGWRLHGSKLYIT
NAPFADFLLVAARTSAALKPESISLFIVELPNAGFDIAKLKKEGIRASETALIHIDNAFVPDDCLLGETEGTYPLILESL
SENRVGVAANALGMARAAFDAAASFANDRLVAGKRVGEYQAIAHKLADMSAQIEATRWLVYYGAWRVDQGTLDAATAARV
KLVASETAVAVSEQAIRIFGGAGIMREYPVGRIHRDALVYVIGEDTSEIQKNIIARSLGFKP
>SEQF1086_CAE44961.1 probable enoyl-CoA hydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSDYVLRERRGATFVITLNRPERRNAFDLEVRQSLAEAIFEARDDDAVKAVIITGTQGVFCAGGDLKSLSDGKRPIYQDR
DRIRRLHTWFHELVNLEKPVIAAVDGPAFGAGFNLALACDFILGTPAARFCAVFGRIGLVPDLGGFFLLPRIVGLQQAKE
LVFTAREVGADEARALGILYRVVPAPGLLDEALALAARFHSASTLALGMSKNILNRSFNLDQNTLAELESHAQALAIHSE
YHEAAVARFLDKQPLPFSWPGEDKDGQS
>SEQF1086_CAE44962.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSMNAFITGASDTSVGELPGSSCMGLHAEAAFGAIADAGLEPGDIDGVLCAYSFTEPHLMLGSVFCEYTGIHPGFCTAVQ
AGGASACIMIMQAAALVASGQCRHVLVVTGDNHLTGLSRDGAVAALAEVGHPQFERPFGISVPASYALVAQRYMHEYGAT
PEHLAAIAVEHRRHAGRHPKAHKRDPISIDDVLNSREISTPLRLLDCCLISDGGAALVISSRAASAASSKRSVEILGAGQ
GHTHEHIVAAPSLTDFGCKASSARAFAAAGVRPADIDVAQIYDSFTITLLVELESIGFFERGQAGSAAMQGQLGLGGALP
CNTHGGLLSYGHSGAAGGMFHAVEAVHQLRGQADQRQVDGARLAFVHGDGGILSAHCSLVLGAA
>SEQF1086_CAE44963.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDKPPITPNAESLPFWQGCRDHRLRYQQCASCGTVQRIPRAVCTHCHGRALQWRDSAGQGVVLSHTTVRRAPTPAFKADT
PYAIALVDLDEGFRLMVNVRGGAGAPLAIGARVRIVFEARGDGAVPIAEMETP
>SEQF1086_CAE44964.1 hypothetical protein BP0638 [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTQLYTYETFTPGTVLGEWAEPLDARLVATWGRLFGAEARDQPARQVGLTVALMIRAYLNVVTPRPPGNIHAQQILSIDG
LPGVGETVRSRIRCLGKEIRRERRYLQLEVSGVGERERNLYTGRMNLIWAA
>SEQF1086_CAE44965.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MRNTMTQRLEEVSMRVTQADIDIYAELTDDFNPLHVDPAFAATTPMGGTIAHGTLSVNLIWQSLARSLGAAALARIDLDI
RFLKPLFAGGAITAGGQPDAAEPDRYEVWVKGADGATLIAGHARLAPITD
>SEQF1086_CAE44966.1 probable acyl-CoA dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQFTHEHRELARTTRRIIAEHLDPYLDEWEAAQMFPAHQVMKALGSAGLLGIGKPAEYGGMALDFSYEMVFAETLGEVRS
SGLSSAIGVQSTMCTPALARHGSDALKRAYLAPTIAGDLVGCIGASEASAGSDVSQIKTWARRDGDDYVINGSKMWITNG
VQGDWICLLCNTSQEGGPHKNKSLIIVPLDTPGVSVSRKLDKLVLRASDTAELFFDDVRVPVSNRIGAENMGFIYQMEQF
QEERMFVAARGMRSMERVIEETIAYAGQRQVFGGTVLSNQVVYHKLAQMQTEIEALRSLLYRAIGQYLDGQDITQLASMA
KYCAGRLSMRIPNECLQFWGGQGVMNENWISRAYRDLRQTAIGGGANEIMLEVIAKTMGIHPGKRA
>SEQF1086_CAE44967.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MHGKNALRALLAGLALGATAAGAAPYPERPVRLIAPIAVGGLTDTLARLVASGLADKLGQPVVVENKPGAGGIIGMEAAA
QAAPDGYTLILVYQGVAAVNASLYKNLPYDTRRDFAPVAGLGNFPLVLVASPASGIQSVGALLERAGKQAKAPSYASAGN
ATTSHLTMELFKNASGLQALHVPYKGEGPANTDVAGGQVDIAFSSLASVAPLVKSGRLVALGISTPERSAVLPDVPTIAQ
AGVADFEAVGWYGLLAPAGTPAEVVAKLSDAVAAVLDQPAIRAKLEALGVNARATPAADFGRQIDAETEKWRAVIQTAGI
TLD
>SEQF1086_CAE44968.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLNHALAGITVLDFSQGIAGPHGACLLGEMGAEVIKIEPPAGDWLRGLGHRQGGTSVLFGYFNRGKAGVALDLKDHAQRR
QALALIDKADVLIESNRPGVMARLGLGYEQARQRNPGLVYISVTGFGQDGPHRDLPATDAAMQAYSGFSFGAGDMRDPVR
VRVSVVDIVTGVYVSNAALAALMARHGNQGQGQYIDLSLMHGISAVQGAKYAEHAATRGVISRELYAAIGIYPTRDGHIA
LSAMRDQQVTDFIGLAGRADLLADPRYATQQARYDNQDELRALIAAELAKQPTAHWIEAARRIDLICQPVQTYDQFRQDP
QVRTYELFQDMDLGYDMPLPAVRMPGMTATQASLRPPPRLGADTAAVLRRHGASPPSADATP
>SEQF1086_CAE44969.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLNLRQIEVFRAVMITGSIRGASELLFVSQPAVSRLLSHMEQRIGFALFERIRGRLYATLEARKLFHEVEAVYAGVQRV
NDMARDLFEHQEGILNLVASPSLGQMLIPAAIAQYRQAHPQVKLSFHHLTQAPLTERLLKRQADLALTILPAGHPNLEQE
EIGAARMVLICPPGHPLAGREPVGAEALAPYPLVAYERGSAFGQKLQAWFDAQSVAARPVIEVGSPQNTCALVQAGAGVA
LVDEFSARSWPGAGFVMRPVRDLAPLTAYLLRLREEPASHLMQSFIETLRRVMRRA
>SEQF1086_CAE44970.1 putative dihydrodipicolinate synthase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQASHGARIDEQTSGVYVIAATPFADDGELDLASLDSLTDFYLDKDVAGLTILGMMGEASKLTEAETATVMTRILKRVDG
RVPVVVGVSHPSNRHLERLARQAMELGAAGVMVAPAAGRHTDDQVYGYYATVAERLGADIPICLQDFPQSAGVHTSVAVI
HRLVDDFPQVVMLKHEDFPGMRKLSQVRARSEAEGRRRISILVGNGGLFLPQEMLRGADGAMTGFAYPEMLVQVCRLFAA
GKAEAAEDLFNLYLPLLRHEFQYGIGLALRKETLRRRGAIRSAYVRQPGPALDAVDHAELGRLIARLEAQLGRAA
>SEQF1086_CAE44971.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF1086_CAE44972.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF1086_CAE44973.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSEVFAVDRAWGPVVEGQALVMREGFSPRYDLDRWSGVISRIGHSAEGESIKDRILVIPTAKGGVAGGWAFYDLLHKGIA
PKALVFGKLNPVMVQGAVLAGMPIMEGFDARLLQAIASGAALRLDPAAKSIALLG
>SEQF1086_CAE44975.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLRNLIAGGLAATALGLGSVAAAAYPDKPIRIIVPFPAGGATDVVARMLGARLGEELGQSVIVENRSGAGGNIGADTVA
RSPADGYTLLVGSPAEVAINPLLYAKMPYDPAKDLVAVARVASAPLVLVVNARSPAHSVADLLAQIKGKDGAANYASSGT
GGPQHLAGEWFRLESRAGIAHIPYKGGAPAMTDLLGGQVDMFFSGLPPALPHLKAGKLRALAVTTPQRSALLPEVPTMAE
QGFAGFAIENWQGVFAPAGTPPEVIKLLSGKIGAITREPGFAERLQAQGASPAFMDAGDMARFVDAERRKYGKLVKESGA
KAD
>SEQF1086_CAE44976.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAQQRLAGGSVPAVFKSRLRMKHLELFRNLCELHSLRKAAEASSMTQPAATKLIQELESMFGVPLFERDRRGMRPNAHGD
LIKRHFNVVMSDVGHMCDELALYASGGAGVVRLGIVPSLSAQLLARITDDLLSAHPNVRLELTEGATDRLMEGLRRNDLD
LIFGRILDRARISELRVVEVYTESFEVVSAAGHPLARKARVSWEDLSQARWILPATGSPLRDMAEQLFTGRGILRPVVSV
EYSSFHQMRYVIAGSQLIGLLPTSVALQGEAQGDIARLSPAERARFAPISLISRQDFEQPPVVRQFEAIVLRAARDLGQA
>SEQF1086_CAE44977.1 D-lactate dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MVHATPPTPGPGDSRGFVEQLRGIVGAAHVLTDEHRTRRYRAGFRFGFGRAIAVVRPGSLLEQWRIVQACVAHGKIVIMQ
AANTGLTGGSTPDGNDYDREIVIISTMRMKKIQLILDGRQVICFPGSTLDQLEQTLAPLGREPHSLIGSSCLGASVFGGI
CNNSEGSLIQRGPAYTELAVYAQLGEDGRLRLVNHLGVALGDSPEEILGRLDQGQFGANDVETAVGSGSDHEYAEHVRAV
DADSPARYNADPRRLFEASGSAGKLILFAVRLDTFPAETQTRVFYIGTNDPGELTAIRRHMLTRLPALPIAGEYLHRDAF
DIADVYGKDTFLAIRQLGTARLPRLFAIKARIDSFCERVPLLPKYLSDRVLQFASRLFPDHLPRRLREYRDAYAHHLMIK
VPGKIGDQTRRFLQAYFDDATGASFECTPEEGKAAFLLRFAAAGAAVRYRAVHAGQVEDIVALDIALKRNDRDWLEQLPP
DVEAPILMKLYYGHFFCHVFHQDYIVKKGEDCLALEHRMWKLLDERGAEYPAEHNVGHLYDAKPELKAFYRGLDPCNQFN
PGIGRTSKLQGWR
>SEQF1086_CAE44978.1 probable acyl-CoA dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDFSYSEEQRMLADSLRRFIETGYTFEKRRAIVCGDAGMDPAIWAGLAELGIQGLNVRAEHGGFGADAATQLVVQHELGR
GLVSEPITPSAVIATTIIQGHGNDEQRRAWLPGLAAGACIAATAYLEQGGRSNPEAVQTVAERAGEAYVLNGAKTLVWHG
AAADVLVVSARLAGTDGLSLFLVPTRGTAGLALASQPTMDGQRAASVRLADVRLPASALLGAPGAGLAALQAGLDWGIAA
LCAEAAGAMERLIELTAEYLRTRKQFGVPLASFQALQHRMADMLVQKELALSMAYVAAQALDEADAAARQRKLSAAKVVV
ARAGRYVGEQAIQLHGGMGMTDEMAPGDYFKRLAMIDPLLGGTDHHLDRYAALLQA
>SEQF1086_CAE44979.1 probable acyl-CoA dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDLRFTSEEQAFREEVRGFLAQALPGELSEKVLAHQHLLRDDYIRWHRILHAHGWGAPGWPVEFGGTGWTPLQRLIFDIE
CGRAGAPRLLPFGLSMIAPVLMKYGSSAQQQRFLPRMPGVEDFWCQGYSEPGAGSDLASLRTRAERKGDRYVVNGQKTWT
TMAHWADWIFCLVRTDAEAKPQAGISLLLIDMKTPGITVRPIKTLDGGHDINETWFEDVEVPVENLVGEENRGWTYAKYL
LGHERTGIAGIGNCHRELAQLKRYAAATADGHGRTLIEDPRVRDKIVRIEMDVMALEMLLLRVATQAAGAPGPEASIVKI
RGSELQQDLAMLQMEIAGPDAWPFDSAWLDGGGQAVDSPAWAACATATYFDMRKTTIFGGVTEVQKNIISKAILGL
>SEQF1086_CAE44980.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MCIQIAARTSRLLRRLLFSLSAPLLLGAWAPTAMAADVAWPGLKPVTLIVGYPAGGGADTVARLVADRLGKKYNQRFIVE
NRSGASGTIAATVVARAPADGYTLLASASSELTVVPTIRTSLQYDPAKDFEPVAVTSQTTYLLVSNLEFPANTLQELVAY
AKKNPGKVSYGSYGQNTFTHLTGEYLQLLTGTKLLHVPYKGGGDLIPALLGNQIEISFNSPAEVLSQVQAGRMKALAVLS
PQRLKEMPSLPTSAKAGYPDLTARGWNGLMAPKGTPTQVLDELNAAVNEIMCSEDVVRDLQARGIEPGGGTRQAARERID
NELQRWRDVVEKVGLQRID
>SEQF1086_CAE44981.1 putative acetylornithine deacetylase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSSATGDLLARLVAFPTVSRESNLALSSFVQDYLAQAGVASELFYNEAGTKANLFATIGLRDRAGIVLSGHTDVVPVDGQ
PWTTDPFCLTEKDGRLHGRGTADMKGFIAAVLAAVPALVERPLRIPVHLAFSYDEELGCLGVGSMLAEIEKRAPLPSMCL
IGEPTLLRPVLGHKGKAAMRCQVKGHACHSAYAPSGVNAIEYAARLIGKLNEIGERLARPQHHDGRFDPPFSTVQTGTIA
GGRALNIVPAECEFDFEVRALPGFDPGLVQRELRTYADRELLPRMQAVNPETGIEMRPLSAYPGLATEAHSEAARLLAQW
CGSDDFGTAAYGSEGGLFSRSGIPTVICGPGSMDQGHKPDEFVSLQQLAQCDAMLARLVAHVREPAAQTE
>SEQF1086_CAE44982.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTFSIIGLCPDTGQLGVAISSSSIAVGARCPWLKPGVGAVSTQNITLPSLGPAILDLLAAGAAPRQALEQALDADPWRQH
RQVTVIDAQGRTASFTGSGALGVHHVVEAENCVAAGNLLSNTAVIGAMASAFERAAGPLADRLLAGMAAGVAAGGEAGPV
HSAALSLAGEVSWPIADLRVDWDEGCPIASLDALWQAYRPQMQDYLARALNPTVAPTYGVPGDE
>SEQF1086_CAE44983.1 putative endoribonuclease [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPTHTRVRMFNTKDTYPNQTLDNDLCQAVRAGQTVYVRGQVGTDFEGRLVGLGDARAQTEQAMSNVKQLLEEAGSDLSHI
VKTTTYLVDPRYREPVYQEVGKWLKGVFPISTGLVVSALGQPQWLMEIDVIAVIPDGWQAQR
>SEQF1086_CAE44984.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTVDSPILTDTLVVGGGQAGIAMSEHLTGQGVPHIVLERDRIAQRWRTGRWDSLVANGPAWHDRFPGLEFEGLDPDGFAS
KDAVADYLEAYARKFNAPIRTGVEVVRAERNGGRYGFTVETSAGTYEAQRIVVATGPFQRPVIPAIAPRDPALTQIHSAD
YRNPGQLPEGAVLVIGAGSSGVQIADELQRAGREVYLSVGPHDRPPRRYRGRDFCWWLGVLGLWDQETVQPGREHVTIAV
SGTDGGRTIEFRALAHQGITLVGVTKSFRDGVVAFENDLAENVARGDANHFALLDAADAYIARNGLSLPDEPQARRVPPD
PACMTEPILQLDLAAANVTSIIWATGYAAEYGWLNVDAFDANGKPRHQRGVSSEPGVYFLGLPWLSRRGSAFLWGVWHDA
KHIAGHIAMQRNYLSYPDFGQSQQ
>SEQF1086_CAE44985.1 probable zinc-binding dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MFDALVLEKNDDFNASVRQVDDSFLPDGDVTVDIHYSTLNYKDGLAITNRSPVVRDWPMVAGIDGAGIVRASENPAWRPG
DAVILNGFGVGEKHKGCLAQRARLRGDWLVRLPEGLSLRQAMAIGTAGYTAMLCVMALERNGVRPGDGPVLVTGATGGVG
SIAVLLLAKLGHQVVAVTGKASEAPYLRSLGAAEILDRAELSGQGKPLQKERWSAAVDVVGSHTLANVLAQTRYGGAVAA
CGLAQGADLPATVMPFILRGVSLIGVDSVMAPLEIRNQAWQRLAKDLDLAMLETLTREIALAEAIPAAHELMAGRVRGRI
LVGTGNA
>SEQF1086_CAE44986.1 LysR-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLSRITLRQLEYCLAAGDYKSIAEAAACIHVSPSSISAAIAHIESELDAQVFVRHHAQGLSTTPLGEDLLKQMRGVLDQT
AGLYGIVSDAQSSIRGPLRVGCFTTLAAMVTPELCQGFSRAHPQVQVTHVEDHHEGLIERLYKGQIDVAVTYDLEVQGTD
ITFEPLATLPPHVIVGETSPLAQQRVADLKGLAEHPMVLLDLPRSREYFFGLFHAQQLEPLVAARSGSPDVVRSLVANGV
GYSLVNVRPRMSHSLDGKRVLSLRLAGKHQPMRLGMAWIPVPRPRRVLEAFMQRCRTYISDEHVPGMVAPSHFM
>SEQF1086_CAE44987.1 putative acetyl-CoA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MDNASVSPGFTRPPRLSVARIVAPGSIAVVGASDDLKKFGGRIIHYVTRNGYRGTVIPVNPRRAEVAGLLAVPSIAHLGP
VDVAILALPVDMIEQAIGECAAAGVGACVIVSAGFAELGDEGVARQDRIVRIAREAGMRLVGPNCMGIINPHHRMALTSS
LVVEQGELLPGNIGLISQSGALMVSMYDRACREQIRFSACVSLGNQCDLEICDFFEYMIDDPLTRVITMYVEGFVDTGRF
AKLARRAQRAGKPVLLTKTGRTAAGAEAARSHTASLAGNYRALEALCEATGVTIVDDPDGMLQLAAILARFGRCAAEGVG
IVSPSGGAIGIGVDRLSDVGIRLGRLDAASQQLLGTVMNPSHAFNPVDLGNRTTEEMSQLRTIVQAYNQAPDIGVIFVIL
TTSPHFEQVTLALGQAMAQAGGKPVLFLVTPGGVADNCRTLLQDLGLPYVDRMDDATRILRHYVPKADALPARDAPRPAS
WPMPEGAGRMLGARPGESEVKALLRAYGIPLAQERFCRTAEQAVEAARAIGFPVVLKAVSAQLVHKSDIGAVKLRLADDA
AVRRAWAEIEQALSSQVDGAVLDGCLVAEMVTAQSELLVGAINDAQFGPMIMVGFGGVTVELVPDTQLAVAPVDTEQAMA
LLRRLKQWPLLDGYRGMPKADVAAVAEVVSRVSWLIADLRDQVAELDINPLLIRAGDGKPIGVDARAAMLGPG
>SEQF1086_CAE44988.1 probable enoyl-CoA hydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAGTIDITHEGAVSTMTINAPPLNVFSVEMLHALLEGLQALEQREQTRAIVIRGAGSRAFSAGANLNDQADFSEHDARML
RVIGREVVERIETLEKPVITAIEGWCIGGGTGIAWIGDIRIASDTAKFRAGDAYLGIIPTWSIGMVRLVHFLGRNRTLGL
LLLGEDIDAAAALELGLVTRVVPAGEFNEQVAQIAARLATAAPMSVKAIKLAVRAQYRDNTDRAAQLEEEWCTRIWASED
KNEGIAAFKEKRQPRFKGR
>SEQF1086_CAE44989.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKLRLAENFRAVFYAPFYALKALGHAGREGLEIEWLPPAGPGGAIDEVKAGAVDLTWGGPMRVIKDHDSAPDNGASLLSF
GEAVGRDPFSLVGRAGLAARGLHDLPSLRLGVVSEVPTPWYCLRADLHDRGIDIARDGRLVEALTMPQQVQALADGTLDV
AQLFEPCASQALAAGGRLLYDAASRGPTVYTTFICSRDGLARNGAALAALDRALRATQAWIHAHDARDLARLTAPFFTEL
APDILHAAIERYRRNGIWSETTHVNKEGFDRLACSLHSGGFVSSRIGYEACVHNFDH
>SEQF1086_CAE44990.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MAILHPLNFARGLCRLPRLALSASILLLASLASPAASAADAFPNRSIRMIAPFSAGGPADIVSRLYAQHLSDLMGQPVVV
LNRDGAGGIIGTNEAARAAPDGYTIVFGTTSTMVINQIISKKLPYDFFRDFSLVGLIANAPHVLAVRADFPARTVPELIA
LAKQHPGKYTFATSGIGTIVQMGGELLKYTAGINLMHVPYKGGGPATLALLGGEVDMTVNDLTTIKNHIASGKLRALAVA
DKNRLALLPDVATFTELGLPKMVSSTWWGIALPQATPADIQARFQAANSKIVANPDYAARLAELAVQPLVLTDQEARDFI
AAETQKWQTIANVADISVD
>SEQF1086_CAE44991.1 thymidine diphosphoglucose 4,6-dehydratase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSVLVTGGAGFVGLNLIEQLLERGEDVVAFGPAPLPDAATAAMAHLPGRLSTVLGDVRRGADLDAALREHAVDRVVHGAA
VTAGLEREKNAAADIFTVNLLGAVKVMEAGLRHGVRQVVQLGTGSVFGAAGQVEGMLDETSAVLPETLYGISKFAAERTG
VRYRKTRGLNLTVLRLGTVFGRWEYDTGVRDTLSLPLQLSGIAEAGGQAVVHSLAADDWVYSVDVARGILAVLDRGQTPD
PVYHLSAGARWSVRDWCERLRERFPRFAYRMADNLDECTIGRDKAVQRAPMDIARLRRDTGYEPLYMLERAFDDYLAWRA
AVGRIA
>SEQF1086_CAE44992.1 glucosamine--fructose-6-phosphate aminotransferase [isomerizing] [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MCGIVGAVAQRDITPILIEGLKRLEYRGYDSCGVALYMDGHLRRTRSTKRVAELSEQVAEDKLGGFTGIAHTRWATHGIP
ATYNAHPHFSAQGKDEPRIALVHNGIIENHEELRQELQGVGYVFESQTDTEVIAHLVNHLYAGDLFEAVQQAVRRLQGAY
AIAVFCRDEPHRVVGARQGSPLVVGLGQNENFLASDALALAGTTDQIIYLEDGDVVDLQLARVWIVDQAGKQVERKAHTV
QVHTGAAELGPYRHFMQKEIFEQPRAVGDTLQDIESITPELFGDGAYKVFKEIDSLLILACGTSYYAGLTAKYWIESIAR
IPVAVEIASEYRYRDSVPNPNALVVTISQSGETADTLAALKHVRSLGMQHTLTVCNVVTSAMVRECELAYITRAGVEIGV
ASTKAFTTQLTALFLLTLALAQTRGRLTEEQEAEHLKALRHLPAAIGAVLALEPQIMAWADRFASKENALFLGRGMHYPI
ALEGALKLKEISYIHAEAYPAGELKHGPLALVTEHMPVVTIAPKDALLEKLKSNMQEVRARGGELYVFADADSKIANAEG
MHVIRMPEYYGALSPIVHTIPLQLLSYHTACVRGTDVDKPRNLAKSVTVE
>SEQF1086_CAE44993.1 AsnC-family transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQNTPNPSVPLDDLDRRILDQMQRDCTLTNQELAARVHASPPTCLRRVRRLVDEGVIEKQVAIVAPAKVGSTLTAIVEIT
LDVQAAERLAEFEASLLDEPAVLQCYRVSPGPDFVVIVQVADMPAYHALAHRVFTAQANVRNVRTFFSVHRAKFETRIGI
GG
>SEQF1086_CAE44994.1 probable thiolase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MLDAVIVSTARTPIGKARRGALNLTHGADLGAHAIRHAVLRAGLEAGEVEDVILGCGYPEGGTGRNVARLSALRAGMPVT
VSGMTVQRACSSGLQAIAIAAGRIRTEGVPAIVAGGVESVSLVLDHINRSSHRNEWLSAHLPGIDMTMIETADLVAQRYG
ISREAQDEYALRSQRLTAAAQEAGRFEHEIAPIRTTMRTIDPATGEAVLRQVECARDEGARPDTSLDNLARLAPVRGDGQ
FVTAGNASQLSDGAAACVLMSGREAARRGLEPLGVFRGFATVGCEPQEMGIGPVLAVPRLLERHGLTVDDIDLWELNEAF
ACQVLYCRDRLGIPDARLNVDGGAISIGHPFGMSGARMVGHALIEGRRRGARYVVVTMCVGGGMGAAGLLEVQQ
>SEQF1086_CAE44995.1 probable enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase, bifunctional enzyme [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MTNPDFEHIKPVVSVARHRNVAVLSVDNPPINALSDTVRAGLCSALREAEADPAVRAVVLACEGNTFVAGADIREFARAK
GAAEAIDVPAVIESCRKPVVAALHGQALGGGLELALACHGRVALAGCRLGLPEITLGLIPGGGGTQRLPRLIGLEAAAEL
ILSGATIDAETARESGLLDAVWPDRLRERAIEFAASLADSPAGVRRASTLAHPPMSPQTGQDLRKIAESRPAALRAPQAG
AAAVEALSAAAQPDFARGRALERELFARLRDGEESRALRALFFAERSARRVGLDDATSAPPMAHDAAVVGAGTMGRGIAI
ALADAGLRVRFIDVEQASLDRALEAIRAHYRSLAARGRMTEAAARDAVARISPASDMQAAAEADVVVEAAFEDLAIKQAI
FRQLDSIVRPGAVLATNTSTLDVDAIAAATRRPQDVVGTHFFSPANVMRLLEVVRGARTAPRTLGAVLALGRRMGKVCVT
VGVCDGFVANRMSAHRARQIELLLQHGALPQDIDQAAREFGFSMGPCAATDLAGLDISWRIRRGKGARSPIADALCELGR
FGQKVGRGYFSYAPGSRVAVPDPEVEALIRRMAEQLGIRRQSFDLATITDRLILPVINEGARVLQDGVARQARDIDLIWV
HGFGWPARRGGPMFHAERVGLASVCDRLARLADALEDASLQPAPLLRDLATRGAGFASLHAARQA
>SEQF1086_CAE44996.1 probable acyl-CoA dehydrogenase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPLANHEVSPSRPRTADAAESIPNDCRGQNFWRLDPSLRQLLALCADTEELRHFTPHFDRLGELAGNTLDELADAADKHP
PTLAPRDRHGRDVDRIDYHPAYREMERIAFSEFGMAAIGHKPGVLGWPGHASPLVKYTLTYLFSQAEFGLLCPVNGNDAA
VGMIQRYADDTLKQRMAGMLSQDMRTLLKIGHFMTERTGGSDLAGIGTHARFDGSAWKIYGEKWFYSAIDADYVLVLARP
EGAPAGTRGLGMFVVPRLLEDGTRNRYRIARLKNKLGTRSMATGEVVFDGALAHAIGQGRDGIRYAVLPINASRLSHGVR
AAGMMRRCLNESLHFARRRAAFGKPVIAHPLMKRSLLKIMVPTEQALSACMFVASTMHRAGADDPRDRKIVRLATALLKF
RACRDNATVATAAMEVRGGSGYIEEWINARLVRDAQTGLLWEGTSNINALDIVTRAVARDAAHEALRQRLMELARDARVP
PRHGAALTQAVEEAVARIAAIAADPQLEHLARSASSRLYHVMTAVLLAHEGAMLAARTGDARRLLLSWMVLMHRIEHAEP
FDGEHARRESRAADLLLDVDRPVTLEALHAVTGMLDANAA
>SEQF1086_CAE44997.1 putative exported protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MQKKRRALLSLLGASAFPALAGQAFGQGPAWPTRHLRFISGGAAGGTSDIVARNLQEPLQSKFGQSVVIENMPGVGGLIG
AGNAARATDGHTFFVSNLASNVLSVLLYEKVPFDWHTDLPGVARCCTLPNGLFVRSDTGITSAQQLFDTLRKDPEKRVFS
SAAIGTTSHLSCVMLGQRLGIDLLHIPFKGAAGNMLGLLQGDVFFTIENIPTFAALVKEGRLRLLAVSTAERSPNFPDVP
TIQESDIENFDVFSWFGISAARSTPRAAIDAVAAEILGQLAEPVMQTRFENLGMTVAGLGPDAYDKFIASEMADWGATVK
AAGLKPAK
>SEQF1086_CAE44998.1 acetyl-CoA synthetase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MPTPSQSRRPGSGHTLTALFEPRSVAVVGASDDPSKIGGRPLHLLKAARFALPIYPVNPARSVVQGLDAYARITETPTRP
DLAIVAVPAAHVLATFDDVVAAGARAAIVYTSGFAEIGAEGVKVQAELTARARASGVRVLGPNCLGVINTRSKLIATFSG
AVGHAPPRPGSIGLASQSGALGAHCLVLAERRGIAFSVWATSGNESDIDVAELIAYMATDPGTHVIVACIEGVRDAGRLI
EALELARTHGKQIVMMKVGSSPIGAAAAASHTASMVGSDQVFDAVLREFGVYRAHSIEDMLDVAYALTVHQSPRGRSLAV
VTTSGGVGVLLADEAERLGVDMPELPAIAQARIRELLPYAGTRNPVDVTAQITNTPEILGPMLDALLASGTVGSLLLFLS
HLGLNAAMMRRLMPALTALSKRPGPQVRVACLLACDEVRQELEALGFSVFEDPTRAIRTVAALMEIATAQAQARPARTLP
RLPDTAHAVTPGMQYSETEAKRLVRSIGIQTLPERIAQDPAQAAAIATELGFPVALKIVSPEILHKSDVGGVQLAVQTAD
EARSVYTSMMARVRRNCPQARIDGIAIAPMARPGVDLILGCIQDPTFGPCLMLGSGGVYTEILADAVIRRAPFDAATARS
MIAQLKGAPLLDGARGMPRADTDALAQAVAMLSVYAYANRRHIESLEINPLRVLPAGQGVVALDALATTVRHPTEPGEAT
VCPAQEAHS
>SEQF1086_CAE44999.1 conserved hypothetical protein [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNDMHHFTTAISKIVSTPQEEETIIRGHRLSDLIREQPFVASAFLLLTGRLPDAGEARTLDAVLTACVDHGVTPAAAIGR
TFASYGAPIAQAMAGAALLYGDVAGGVGDPLAAMMKQAIAEAGARNGAPGEHDVDAAAGNLVAAALRAGGRMPGFGNPPH
ARDPRPRVLLEVARCAGTAGIHCELLLAAERHLAAAKGRDIPINIDGIVAALALDLGLPDGCAAALVMIARKFSVLTHYL
EEKGQNTKWRHVPQECVHYTGPMPS
>SEQF1086_CAE45000.1 probable transcriptional regulator [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MIGALRHACPGSRAAAFVLSGLQTMTNEVKSAVRVIQILEYFDTVRREAGVLEISRALGFPASSTAGILRSLQRLSYLVQ
DEQRLYRPTPRVTLLGSWIDPLLAHDGPLMALMSHLSKATGETIILALQVDAGARYIHIIPSTQRVRLHVNVGDVRPLLT
SGTGRLFVSTMEPDQVRRAVFRHNALRGANEPEINLSTVTRDATQIRKNGYATSLDRLVPGVGIIAALLPEREGTRPMAV
AVGGPSVTIRTRTAELASLLREGIGQYLPHLGNAGDQS
>SEQF1086_CAE45001.1 probable molybdopterin oxidoreductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MKERDTNAARPDGEPPVQWRRHSSHWGVFDAAHTGDRLKVRPFAGDPDPNRLIENLPDAIRHGVRVPEPMVRLGWLRDGP
GPDTRRGSDDYVPMSWDEILDRLARKLRRVVDHHGTAGVFGGSYGWSSAGRFHHAQSQLHRFLNVALGGYVRSVHSYSSG
AAQVVLPHVVGGFDEVTLCNVSWEQITRHTDVVLAFGGMALKNSRVAAGGVSRHIERQAMAQAAGRGCRFYTIGPQRDDL
PTEAAATWLPVVPGTDVALMLGIAHTLVAAGLHDRDFVVDFCDGWPVFEDYLLGRADGLAKNAAWAAALCGIDAAAITEL
ALGLAGKRVLVTVAHSLQRADHGEQPVWMGLVLAALLGQVGLEGGGYSYALGSISKYGRRKNAVSIAALPQGANHEKRFI
PCARIADMLLSPGETFPYNGRTLRYPHIRLAYWAGGNPFHHHQDLGRLAQAFQRLDTFVVHEIGWTATARHADIVLPCTM
TLERDDIGASPTDDLMVAMQQVVPPYADARNDYDIFSDLAQRMGCGAAMTEGRSASDWLQWIYAATREQLAAKGLDAPSF
DAFWEKGELRLPQRPDDGGAQRAFRLDPAAHPLPTPSGRIQIASAQIAAFGYDDCPGHPAWLPPADPVSAAYPLYLVANQ
PANKLHSQFDYGGYSQASKREGREVCTLHPALARAREIGEGDIVRIYSPRGSCLAAATLSTDIREDVVRLPTGAWYDPEQ
DERGLPMCVHGNPNAVTRDAGTSSLAQGCSGQLTAVQIEKYLGPLRDVRAYCPPAIATRPGPPGPLAPPAG
>SEQF1086_CAE45002.1 transposase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHT
>SEQF1086_CAE45003.1 glutamyl-tRNA reductase [Bordetella pertussis Tohama I] [HMT-828 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251] 
MSVAVLAFGLNHTSAPVSVRERVSMPVDLVKPALEGLRATFGGAVREAAILSTCNRTELYCAAEGQVAEHLPAWLAEHNR
LEAAALRPHLYRHQHDDAVRHAFRVASGLDSMVLGEPQILGQMKDAVRAANEAGALGTLLHQLFQRTFSVAKEVRSQTAI
GAHSVSMAATAVRLAERVFGQLEDARTLFIGAGEMIELCATHFAAQRPRSMVVANRTIERAETLAGRFSAQTMKLADLTE
RLAEFDVIVSCTASSLPILGLGMVERATRQRRHRPMVMIDLAVPRDIEPEVGRLDDVYLYSVDDLGRLVQSGTDARRAAV
VQAEAIIETRVQGFMHWMQSREVVPVIRDLHQAADDVRAAELERARRMLARGESPEAVLEQLAHGLTQKYLHGPLAALNR
SEGDERRQLLAWVPRLFPGRDSRR