##gff-version 3
#!gff-spec-version 1.21
#!processor NCBI annotwriter
#!genome-build ASM19585v1
#!genome-build-accession NCBI_Assembly:GCA_000195855.1
##sequence-region AL450380.1 1 3268203
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=272631
AL450380.1	EMBL	region	1	3268203	.	+	.	ID=AL450380.1:1..3268203;Dbxref=taxon:272631;Is_circular=true;gbkey=Src;mol_type=genomic DNA;strain=TN
AL450380.1	EMBL	gene	1	1566	.	+	.	ID=gene-dnaA;Name=dnaA;gbkey=Gene;gene=dnaA;gene_biotype=protein_coding;gene_synonym=ML0001
AL450380.1	EMBL	CDS	1	1566	.	+	0	ID=cds-CAC29509.1;Parent=gene-dnaA;Dbxref=GOA:P46388,InterPro:IPR001957,InterPro:IPR003593,InterPro:IPR010921,InterPro:IPR013159,InterPro:IPR013317,InterPro:IPR018312,InterPro:IPR020591,InterPro:IPR027417,NCBI_GP:CAC29509.1;Name=CAC29509.1;Note=Similar to M. tuberculosis dnaA%2C chromosomal replication initiator protein%2C SW:DNAA_MYCTU (P49993) (507 aa)%3B Fasta score E(): 0%2C 87.2%25 identity in 507 aa overlap and Mycobacterium smegmatis dnaA%2C SW:DNAA_MYCSM (P49992) (495 aa)%3B Fasta score E(): 0%2C 69.2%25 identity in 441 aa overlap. Previously sequenced as SW:DNAA_MYCLE (P46388) (521 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 521 aa overlap. Contains Pfam match to entry PF00308 bac_dnaA%2C Bacterial dnaA protein. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS01008 DnaA protein signature.;gbkey=CDS;gene=dnaA;product=putative chromosomal replication initiator protein;protein_id=CAC29509.1;transl_table=11
AL450380.1	EMBL	sequence_feature	544	1482	.	+	.	ID=id-dnaA;Note=Pfam match to entry PF00308 bac_dnaA%2C Bacterial dnaA protein%2C score 712.20%2C E-value 8.3e-240;gbkey=misc_feature;gene=dnaA
AL450380.1	EMBL	sequence_feature	664	687	.	+	.	ID=id-dnaA-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=dnaA
AL450380.1	EMBL	sequence_feature	1426	1482	.	+	.	ID=id-dnaA-3;Note=PS01008 DnaA protein signature;gbkey=misc_feature;gene=dnaA
AL450380.1	EMBL	gene	2081	3280	.	+	.	ID=gene-dnaN;Name=dnaN;gbkey=Gene;gene=dnaN;gene_biotype=protein_coding;gene_synonym=ML0002
AL450380.1	EMBL	CDS	2081	3280	.	+	0	ID=cds-CAC29510.1;Parent=gene-dnaN;Dbxref=GOA:P46387,InterPro:IPR001001,InterPro:IPR022634,InterPro:IPR022635,InterPro:IPR022637,NCBI_GP:CAC29510.1;Name=CAC29510.1;Note=Similar to M. tuberculosis dnaN%2C DNA polymerase III%2C [beta] subunit%2C SW:DP3B_MYCTU (Q50790) (402 aa)%3B Fasta score E(): 0%2C 80.9%25 identity in 403 aa overlap and Mycobacterium smegmatis dnaN%2C SW:DP3B_MYCSM (P52851) (397 aa)%3B Fasta score E(): 0%2C 77.3%25 identity in 397 aa overlap. Previously sequenced as SW:DP3B_MYCLE (P46387) (399 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 399 aa overlap. Contains Pfam match to entry PF00712 DNA_pol3_beta%2C DNA polymerase III beta subunit.;gbkey=CDS;gene=dnaN;product=putative DNA polymerase III%2C [beta] subunit;protein_id=CAC29510.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2117	3214	.	+	.	ID=id-dnaN;Note=Pfam match to entry PF00712 DNA_pol3_beta%2C DNA polymerase III beta subunit%2C score 592.70%2C E-value 2.2e-174;gbkey=misc_feature;gene=dnaN
AL450380.1	EMBL	gene	3281	4438	.	+	.	ID=gene-recF;Name=recF;gbkey=Gene;gene=recF;gene_biotype=protein_coding;gene_synonym=ML0003
AL450380.1	EMBL	CDS	3281	4438	.	+	0	ID=cds-CAC29511.1;Parent=gene-recF;Dbxref=GOA:P46391,InterPro:IPR001238,InterPro:IPR003395,InterPro:IPR018078,InterPro:IPR027417,NCBI_GP:CAC29511.1;Name=CAC29511.1;Note=Similar to M. tuberculosis recF%2C DNA replication and SOS induction protein%2C SW:RECF_MYCTU (Q59586) (385 aa)%3B Fasta score E(): 0%2C 76.4%25 identity in 385 aa overlap and Mycobacterium smegmatis recF%2C SW:RECF_MYCSM (P50916) (384 aa)%3B Fasta score E(): 0%2C 70.0%25 identity in 383 aa overlap. Previously sequenced as SW:RECF_MYCLE (P46391) (385 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 385 aa overlap. Contains 2 Pfam matches to entry PF00470 RecF%2C RecF protein. Contains PS00617 RecF protein signature 1. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00618 RecF protein signature 2.;gbkey=CDS;gene=recF;product=putative DNA replication and SOS induction protein;protein_id=CAC29511.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3287	3415	.	+	.	ID=id-recF;Note=Pfam match to entry PF00470 RecF%2C RecF protein%2C score 18.90%2C E-value 0.00024;gbkey=misc_feature;gene=recF
AL450380.1	EMBL	sequence_feature	3368	3391	.	+	.	ID=id-recF-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=recF
AL450380.1	EMBL	sequence_feature	3614	3691	.	+	.	ID=id-recF-3;Note=PS00617 RecF protein signature 1;gbkey=misc_feature;gene=recF
AL450380.1	EMBL	sequence_feature	4100	4423	.	+	.	ID=id-recF-4;Note=Pfam match to entry PF00470 RecF%2C RecF protein%2C score 5.20%2C E-value 1.5;gbkey=misc_feature;gene=recF
AL450380.1	EMBL	sequence_feature	4244	4297	.	+	.	ID=id-recF-5;Note=PS00618 RecF protein signature 2;gbkey=misc_feature;gene=recF
AL450380.1	EMBL	gene	4435	5004	.	+	.	ID=gene-ML0004;Name=ML0004;gbkey=Gene;gene=ML0004;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	4435	5004	.	+	0	ID=cds-CAC29512.1;Parent=gene-ML0004;Dbxref=InterPro:IPR007922,InterPro:IPR023007,NCBI_GP:CAC29512.1;Name=CAC29512.1;Note=Similar to hypothetical proteins from mycobacteria e.g. M. tuberculosis Rv0004%2C ypothetical protein%2C TR:P71573 (EMBL:AL123456) (187 aa)%3B Fasta score E(): 0%2C 77.2%25 identity in 167 aa overlap. Previously sequenced as TR:Q50181 (EMBL:Z70722) (199 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 187 aa overlap.;gbkey=CDS;gene=ML0004;product=conserved hypothetical protein;protein_id=CAC29512.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	5211	5216	.	+	.	ID=id-AL450380.1:5211..5216;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	5229	7265	.	+	.	ID=gene-gyrB;Name=gyrB;gbkey=Gene;gene=gyrB;gene_biotype=protein_coding;gene_synonym=ML0005
AL450380.1	EMBL	CDS	5229	7265	.	+	0	ID=cds-CAC29513.1;Parent=gene-gyrB;Dbxref=GOA:Q59533,InterPro:IPR001241,InterPro:IPR002288,InterPro:IPR003594,InterPro:IPR006171,InterPro:IPR011557,InterPro:IPR013506,InterPro:IPR013759,InterPro:IPR013760,InterPro:IPR014721,InterPro:IPR018522,InterPro:IPR020568,NCBI_GP:CAC29513.1;Name=CAC29513.1;Note=Similar to M. tuberculosis gyrB%2C DNA gyrase subunit B%2C SW:GYRB_MYCTU (P41514) (686 aa)%3B Fasta score E(): 0%2C 87.5%25 identity in 679 aa overlap and to Mycobacterium smegmatis gyrB%2C SW:GYRB_MYCSM (P48355) (675 aa)%3B Fasta score E(): 0%2C 85.0%25 identity in 679 aa overlap. Previously sequenced as SW:GYRB_MYCLE (Q59533) (697 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 678 aa overlap. Contains Pfam match to entry PF00986 DNA_gyraseB_C%2C DNA gyrase B subunit%2C carboxyl terminus. Contains Pfam match to entry PF00204 DNA_topoisoII%2C DNA topoisomerase II (N-terminal region). Contains PS00177 DNA topoisomerase II signature.;gbkey=CDS;gene=gyrB;product=putative DNA gyrase subunit B;protein_id=CAC29513.1;transl_table=11
AL450380.1	EMBL	sequence_feature	5274	7001	.	+	.	ID=id-gyrB;Note=Pfam match to entry PF00204 DNA_topoisoII%2C DNA topoisomerase II (N-terminal region)%2C score 1031.00%2C E-value 0;gbkey=misc_feature;gene=gyrB
AL450380.1	EMBL	sequence_feature	6606	6632	.	+	.	ID=id-gyrB-2;Note=PS00177 DNA topoisomerase II signature;gbkey=misc_feature;gene=gyrB
AL450380.1	EMBL	sequence_feature	7029	7229	.	+	.	ID=id-gyrB-3;Note=Pfam match to entry PF00986 DNA_gyraseB_C%2C DNA gyrase B subunit%2C carboxyl terminus%2C score 154.30%2C E-value 2.1e-42;gbkey=misc_feature;gene=gyrB
AL450380.1	EMBL	gene	7318	11067	.	+	.	ID=gene-gyrA;Name=gyrA;gbkey=Gene;gene=gyrA;gene_biotype=protein_coding;gene_synonym=ML0006
AL450380.1	EMBL	CDS	7318	11067	.	+	0	ID=cds-CAC29514.1;Parent=gene-gyrA;Dbxref=GOA:Q57532,InterPro:IPR002205,InterPro:IPR003586,InterPro:IPR003587,InterPro:IPR004042,InterPro:IPR005743,InterPro:IPR006141,InterPro:IPR006142,InterPro:IPR006691,InterPro:IPR013757,InterPro:IPR013758,InterPro:IPR013760,InterPro:IPR024946,InterPro:IPR027434,InterPro:IPR028992,NCBI_GP:CAC29514.1;Name=CAC29514.1;Note=Similar to M. tuberculosis gyrA%2C DNA gyrase subunit A%2C SW:GYRA_MYCTU (Q07702) (838 aa)%3B Fasta score E(): 0%2C 91.1%25 identity in 695 aa overlap and to Mycobacterium smegmatis gyrA%2C SW:GYRA_MYCSM (P48354) (842 aa)%3B Fasta score E(): 0%2C 88.2%25 identity in 692 aa overlap. Previously sequenced as SW:GYRA_MYCLE (Q57532) (1273 aa)%3B Fasta score E(): 0%2C 99.9%25 identity in 1246 aa overlap. Contains a probable intein from aa 131 to 550 inclusive. Contains 2 Pfam matches to entry PF00521 DNA_topoisoIV%2C DNA gyrase/topoisomerase IV%2C subunit A. Contains PS00018 EF-hand calcium-binding domain. Contains PS00881 Protein splicing signature.;gbkey=CDS;gene=gyrA;product=putative DNA gyrase subunit A;protein_id=CAC29514.1;transl_table=11
AL450380.1	EMBL	sequence_feature	7435	7707	.	+	.	ID=id-gyrA;Note=Pfam match to entry PF00521 DNA_topoisoIV%2C DNA gyrase/topoisomerase IV%2C subunit A%2C score 239.20%2C E-value 6e-75;gbkey=misc_feature;gene=gyrA
AL450380.1	EMBL	sequence_feature	8947	8970	.	+	.	ID=id-gyrA-2;Note=PS00881 Protein splicing signature;gbkey=misc_feature;gene=gyrA
AL450380.1	EMBL	sequence_feature	8968	10053	.	+	.	ID=id-gyrA-3;Note=Pfam match to entry PF00521 DNA_topoisoIV%2C DNA gyrase/topoisomerase IV%2C subunit A%2C score 669.60%2C E-value 7.4e-211;gbkey=misc_feature;gene=gyrA
AL450380.1	EMBL	sequence_feature	10090	10128	.	+	.	ID=id-gyrA-4;Note=PS00018 EF-hand calcium-binding domain;gbkey=misc_feature;gene=gyrA
AL450380.1	EMBL	ribosome_entry_site	11184	11189	.	+	.	ID=id-AL450380.1:11184..11189;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	repeat_region	11189	11473	.	-	.	ID=id-AL450380.1:11189..11473;Note=285 bp repeat%2C shares 98%25 sequence identity 280/285 with bases 3145214..3145498;gbkey=repeat_region
AL450380.1	EMBL	gene	11195	12106	.	+	.	ID=gene-ML0007;Name=ML0007;gbkey=Gene;gene=ML0007;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	11195	12106	.	+	0	ID=cds-CAC29515.1;Parent=gene-ML0007;Dbxref=GOA:O32870,InterPro:IPR021949,NCBI_GP:CAC29515.1;Name=CAC29515.1;Note=Similar to M. tuberculosis Rv0007%2C hypothetical protein%2C TR:P71575 (EMBL:AL123456) (304 aa)%3B Fasta score E(): 0%2C 53.8%25 identity in 316 aa overlap. Previously sequenced as TR:O32870 (EMBL:Z70722) (303 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 303 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.%3B~Contains a region identical to ML2630;gbkey=CDS;gene=ML0007;product=putative membrane protein;protein_id=CAC29515.1;transl_table=11
AL450380.1	EMBL	gene	12194	12270	.	+	.	ID=gene-ileT;Name=ileT;gbkey=Gene;gene=ileT;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	12194	12270	.	+	.	ID=rna-ileT;Parent=gene-ileT;Note=tRNA Ile anticodon GAT%2C Cove score 88.84;gbkey=tRNA;gene=ileT;product=tRNA-Ile
AL450380.1	EMBL	exon	12194	12270	.	+	.	ID=exon-ileT-1;Parent=rna-ileT;Note=tRNA Ile anticodon GAT%2C Cove score 88.84;gbkey=tRNA;gene=ileT;product=tRNA-Ile
AL450380.1	EMBL	gene	12404	12479	.	+	.	ID=gene-alaT;Name=alaT;gbkey=Gene;gene=alaT;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	12404	12479	.	+	.	ID=rna-alaT;Parent=gene-alaT;Note=tRNA Ala anticodon TGC%2C Cove score 86.68;gbkey=tRNA;gene=alaT;product=tRNA-Ala
AL450380.1	EMBL	exon	12404	12479	.	+	.	ID=exon-alaT-1;Parent=rna-alaT;Note=tRNA Ala anticodon TGC%2C Cove score 86.68;gbkey=tRNA;gene=alaT;product=tRNA-Ala
AL450380.1	EMBL	gene	12856	13230	.	-	.	ID=gene-ML0008;Name=ML0008;gbkey=Gene;gene=ML0008;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	12856	13230	.	-	0	ID=cds-CAC29516.1;Parent=gene-ML0008;Dbxref=UniProtKB/TrEMBL:Q9CDF1,NCBI_GP:CAC29516.1;Name=CAC29516.1;Note=Unknown function.;gbkey=CDS;gene=ML0008;product=hypothetical protein;protein_id=CAC29516.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	13763	13766	.	+	.	ID=id-AL450380.1:13763..13766;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	13775	13966	.	+	.	ID=gene-ML0009;Name=ML0009;gbkey=Gene;gene=ML0009;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	13775	13966	.	+	0	ID=cds-CAC29517.1;Parent=gene-ML0009;Dbxref=UniProtKB/TrEMBL:Q9CDF0,NCBI_GP:CAC29517.1;Name=CAC29517.1;Note=Unknown function.;gbkey=CDS;gene=ML0009;product=hypothetical protein;protein_id=CAC29517.1;transl_table=11
AL450380.1	EMBL	pseudogene	15426	15767	.	-	.	ID=gene-ML0010;Name=ML0010;gbkey=Gene;gene=ML0010;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	15426	15767	.	-	0	ID=cds-ML0010;Parent=gene-ML0010;Note=Possible pseudogene of M. tuberculosis orthologue Rv0008c (Best blastx score 124);gbkey=CDS;gene=ML0010;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	15993	16541	.	+	.	ID=gene-ppiA;Name=ppiA;gbkey=Gene;gene=ppiA;gene_biotype=protein_coding;gene_synonym=ML0011
AL450380.1	EMBL	CDS	15993	16541	.	+	0	ID=cds-CAC29519.1;Parent=gene-ppiA;Dbxref=GOA:Q9CDE9,InterPro:IPR002130,InterPro:IPR020892,InterPro:IPR024936,InterPro:IPR029000,NCBI_GP:CAC29519.1;Name=CAC29519.1;Note=Similar to M. tuberculosis ppiA%2C peptidyl-prolyl cis-trans isomerase%2C SW:CYPA_MYCTU (P71578) (182 aa)%3B Fasta score E(): 0%2C 90.1%25 identity in 182 aa overlap and Streptomyces chrysomallus ScCypB%2C peptidyl-prolyl cis-trans isomerase B%2C TR:P77949 (EMBL:U64692) (175 aa)%3B Fasta score E(): 0%2C 63.3%25 identity in 166 aa overlap. Contains Pfam match to entry PF00160 pro_isomerase%2C Cyclophilin type peptidyl-prolyl cis-trans isomerase.%3B~Similar to ML0492;gbkey=CDS;gene=ppiA;product=putative peptidyl-prolyl cis-trans isomerase;protein_id=CAC29519.1;transl_table=11
AL450380.1	EMBL	sequence_feature	16062	16529	.	+	.	ID=id-ppiA;Note=Pfam match to entry PF00160 pro_isomerase%2C Cyclophilin type peptidyl-prolyl cis-trans isomerase%2C score 193.30%2C E-value 2.8e-55;gbkey=misc_feature;gene=ppiA
AL450380.1	EMBL	gene	16566	16979	.	-	.	ID=gene-ML0012;Name=ML0012;gbkey=Gene;gene=ML0012;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	16566	16979	.	-	0	ID=cds-CAC29520.1;Parent=gene-ML0012;Dbxref=InterPro:IPR019692,UniProtKB/TrEMBL:Q9CDE8,NCBI_GP:CAC29520.1;Name=CAC29520.1;Note=Similar to M. tuberculosis Rv0010c%2C hypothetical protein%2C SW:Y010_MYCTU (P71580) (141 aa)%3B Fasta score E(): 0%2C 71.5%25 identity in 137 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0012;product=putative membrane protein;protein_id=CAC29520.1;transl_table=11
AL450380.1	EMBL	gene	17134	17415	.	-	.	ID=gene-ML0013;Name=ML0013;gbkey=Gene;gene=ML0013;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	17134	17415	.	-	0	ID=cds-CAC29521.1;Parent=gene-ML0013;Dbxref=GOA:Q9CDE7,InterPro:IPR009619,NCBI_GP:CAC29521.1;Name=CAC29521.1;Note=Similar to M. tuberculosis Rv0011c%2C hypothetical protein%2C SW:Y011_MYCTU (P71581) (93 aa)%3B Fasta score E(): 0%2C 89.2%25 identity in 93 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0013;product=conserved hypothetical protein;protein_id=CAC29521.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	17421	17424	.	-	.	ID=id-AL450380.1:17421..17424;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	17483	18283	.	+	.	ID=gene-ML0014;Name=ML0014;gbkey=Gene;gene=ML0014;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	17483	18283	.	+	0	ID=cds-ML0014;Parent=gene-ML0014;Note=Possible pseudogene of M. tuberculosis orthologue Rv0012 (Best blastx score 411);gbkey=CDS;gene=ML0014;product=possible cell division protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	18325	19023	.	+	.	ID=gene-pabA;Name=pabA;gbkey=Gene;gene=pabA;gene_biotype=protein_coding;gene_synonym=ML0015
AL450380.1	EMBL	CDS	18325	19023	.	+	0	ID=cds-CAC29523.1;Parent=gene-pabA;Dbxref=GOA:Q7AQP6,InterPro:IPR006221,InterPro:IPR017926,InterPro:IPR029062,UniProtKB/TrEMBL:Q7AQP6,NCBI_GP:CAC29523.1;Name=CAC29523.1;Note=EC_number%3D4.1.3.-%3B~Similar to M. tuberculosis pabA%2C p-aminobenzoate synthase glutamine amidotransferase%2C TR:Q50183 (EMBL:Z70722) (232 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 232 aa overlap (EMBL:AL123456) (232 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 232 aa overlap and to Azospirillum brasilense trpG%2C anthranilate synthase component II%2C SW:TRPG_AZOBR (P26922) (196 aa)%3B Fasta score E(): 0%2C 56.1%25 identity in 187 aa overlap. Previously sequenced as TR:Q50183. Contains Pfam match to entry PF00117 GATase%2C Glutamine amidotransferase class-I. Contains PS00442 Glutamine amidotransferases class-I active site.;gbkey=CDS;gene=pabA;product=putative p-aminobenzoate synthase glutamine amidotransferase;protein_id=CAC29523.1;transl_table=11
AL450380.1	EMBL	sequence_feature	18334	18900	.	+	.	ID=id-pabA;Note=Pfam match to entry PF00117 GATase%2C Glutamine amidotransferase class-I%2C score 264.50%2C E-value 1.4e-75;gbkey=misc_feature;gene=pabA
AL450380.1	EMBL	sequence_feature	18556	18591	.	+	.	ID=id-pabA-2;Note=PS00442 Glutamine amidotransferases class-I active site;gbkey=misc_feature;gene=pabA
AL450380.1	EMBL	gene	19001	20869	.	-	.	ID=gene-pknB;Name=pknB;gbkey=Gene;gene=pknB;gene_biotype=protein_coding;gene_synonym=ML0016
AL450380.1	EMBL	CDS	19001	20869	.	-	0	ID=cds-CAC29524.1;Parent=gene-pknB;Dbxref=GOA:P54744,InterPro:IPR000719,InterPro:IPR002290,InterPro:IPR005543,InterPro:IPR008271,InterPro:IPR011009,InterPro:IPR017441,NCBI_GP:CAC29524.1;Name=CAC29524.1;Note=EC_number%3D2.7.1.-%3B~Similar to M. tuberculosis pknB%2C serine/threonine protein kinase%2C SW:PKNB_MYCTU (P71584) (626 aa)%3B Fasta score E(): 0%2C 86.3%25 identity in 626 aa overlap and to Streptomyces coelicolor pksC%2C serine/threonine protein kinase%2C TR:Q9ZFS8 (EMBL:AF094711) (556 aa)%3B Fasta score E(): 0%2C 47.8%25 identity in 297 aa overlap. Previously sequenced as SW:PKNB_MYCLE (P54744) (622 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 622 aa overlap. Contains Pfam match to entry PF00069 pkinase%2C Eukaryotic protein kinase domain. Contains PS00108 Serine/Threonine protein kinases active-site signature. Contains PS00107 Protein kinases ATP-binding region signature.%3B~Similar to ML0017 and ML0897 and to part of ML0304;gbkey=CDS;gene=pknB;product=putative serine/threonine protein kinase;protein_id=CAC29524.1;transl_table=11
AL450380.1	EMBL	sequence_feature	20054	20839	.	-	.	ID=id-pknB;Note=Pfam match to entry PF00069 pkinase%2C Eukaryotic protein kinase domain%2C score 191.50%2C E-value 1.4e-53;gbkey=misc_feature;gene=pknB
AL450380.1	EMBL	sequence_feature	20432	20470	.	-	.	ID=id-pknB-2;Note=PS00108 Serine/Threonine protein kinases active-site signature;gbkey=misc_feature;gene=pknB
AL450380.1	EMBL	sequence_feature	20750	20821	.	-	.	ID=id-pknB-3;Note=PS00107 Protein kinases ATP-binding region signature;gbkey=misc_feature;gene=pknB
AL450380.1	EMBL	gene	20879	22192	.	-	.	ID=gene-pknA;Name=pknA;gbkey=Gene;gene=pknA;gene_biotype=protein_coding;gene_synonym=ML0017
AL450380.1	EMBL	CDS	20879	22192	.	-	0	ID=cds-CAC29525.1;Parent=gene-pknA;Dbxref=GOA:P54743,InterPro:IPR000719,InterPro:IPR008271,InterPro:IPR011009,NCBI_GP:CAC29525.1;Name=CAC29525.1;Note=EC_number%3D2.7.1.-%3B~Similar to M. tuberculosis pknA%2C serine/threonine protein kinase%2C SW:PKNA_MYCTU (P71585) (431 aa)%3B Fasta score E(): 0%2C 81.0%25 identity in 431 aa overlap and to Streptomyces coelicolor pksC%2C serine/threonine protein kinase%2C TR:Q9ZFS8 (EMBL:AF094711) (556 aa)%3B Fasta score E(): 2.1e-29%2C 39.9%25 identity in 346 aa overlap. Previously sequenced as SW:PKNA_MYCLE (P54743) (437 aa)%3B Fasta score E(): 0%2C 84.6%25 identity in 448 aa overlap. Contains Pfam match to entry PF00069 pkinase%2C Eukaryotic protein kinase domain. Contains PS00108 Serine/Threonine protein kinases active-site signature.%3B~Similar to ML0016 and ML0897 and to part of ML0304;gbkey=CDS;gene=pknA;product=putative serine/threonine protein kinase;protein_id=CAC29525.1;transl_table=11
AL450380.1	EMBL	sequence_feature	21410	22156	.	-	.	ID=id-pknA;Note=Pfam match to entry PF00069 pkinase%2C Eukaryotic protein kinase domain%2C score 187.90%2C E-value 1.6e-52;gbkey=misc_feature;gene=pknA
AL450380.1	EMBL	sequence_feature	21746	21784	.	-	.	ID=id-pknA-2;Note=PS00108 Serine/Threonine protein kinases active-site signature;gbkey=misc_feature;gene=pknA
AL450380.1	EMBL	gene	22189	23667	.	-	.	ID=gene-pbpA;Name=pbpA;gbkey=Gene;gene=pbpA;gene_biotype=protein_coding;gene_synonym=ML0018
AL450380.1	EMBL	CDS	22189	23667	.	-	0	ID=cds-CAC29526.1;Parent=gene-pbpA;Dbxref=GOA:Q9CDE6,InterPro:IPR001460,InterPro:IPR012338,UniProtKB/TrEMBL:Q9CDE6,NCBI_GP:CAC29526.1;Name=CAC29526.1;Note=Similar to M. tuberculosis pbpA%2C penicillin-binding protein%2C TR:P71586 (EMBL:AL123456) (491 aa)%3B Fasta score E(): 0%2C 85.7%25 identity in 490 aa overlap. Also similar to Bacillus subtilis penicillin-binding protein 3%2C pbpC%2C SW:PBPC_BACSU (P42971) (668 aa)%3B Fasta score E(): 2.8e-15%2C 24.5%25 identity in 444 aa overlap. Previously sequenced as TR:Q50185 (EMBL:Z70722) (474 aa)%3B Fasta score E(): 0%2C 96.4%25 identity in 472 aa overlap. Contains a probable N-terminal signal sequence. Contains Pfam match to entry PF00905 Transpeptidase%2C Penicillin binding protein transpeptidase domain.%3B~Similar to region of ML1577;gbkey=CDS;gene=pbpA;product=putative penicillin-binding protein;protein_id=CAC29526.1;transl_table=11
AL450380.1	EMBL	sequence_feature	22222	23250	.	-	.	ID=id-pbpA;Note=Pfam match to entry PF00905 Transpeptidase%2C Penicillin binding protein transpeptidase domain%2C score 351.70%2C E-value 8.2e-102;gbkey=misc_feature;gene=pbpA
AL450380.1	EMBL	gene	23664	25061	.	-	.	ID=gene-rodA;Name=rodA;gbkey=Gene;gene=rodA;gene_biotype=protein_coding;gene_synonym=ML0019
AL450380.1	EMBL	CDS	23664	25061	.	-	0	ID=cds-CAC29527.1;Parent=gene-rodA;Dbxref=GOA:Q50186,InterPro:IPR001182,InterPro:IPR018365,NCBI_GP:CAC29527.1;Name=CAC29527.1;Note=Similar to M. tuberculosis ftsW%2C cell-division protein%2C SW:FTSW_MYCTU (P71587) (469 aa)%3B Fasta score E(): 0%2C 82.3%25 identity in 469 aa overlap and to Streptomyces coelicolor ftsW%2C cell-division protein%2C TR:Q9ZBA6 (EMBL:AL109663) (456 aa)%3B Fasta score E(): 3.3e-25%2C 32.1%25 identity in 377 aa overlap. Previously sequenced as SW:FTSW_MYCLE (Q50186) (465 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 465 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions. Contains Pfam match to entry PF01098 FTSW_RODA_SPOVE%2C Cell cycle protein. Contains PS00428 Cell cycle proteins ftsW / rodA / spoVE signature.%3B~Similar to ML0913;gbkey=CDS;gene=rodA;product=putative cell-division protein;protein_id=CAC29527.1;transl_table=11
AL450380.1	EMBL	sequence_feature	23736	24830	.	-	.	ID=id-rodA;Note=Pfam match to entry PF01098 FTSW_RODA_SPOVE%2C Cell cycle protein%2C score 563.80%2C E-value 1.1e-165;gbkey=misc_feature;gene=rodA
AL450380.1	EMBL	sequence_feature	23796	23870	.	-	.	ID=id-rodA-2;Note=PS00428 Cell cycle proteins ftsW / rodA / spoVE signature;gbkey=misc_feature;gene=rodA
AL450380.1	EMBL	gene	25058	26587	.	-	.	ID=gene-ML0020;Name=ML0020;gbkey=Gene;gene=ML0020;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	25058	26587	.	-	0	ID=cds-CAC29528.1;Parent=gene-ML0020;Dbxref=GOA:Q9CDE5,InterPro:IPR001932,InterPro:IPR015655,UniProtKB/TrEMBL:Q9CDE5,NCBI_GP:CAC29528.1;Name=CAC29528.1;Note=Similar to M. tuberculosis ppp%2C putative protein phosphatase%2C TR:P71588 (EMBL:AL123456) (514 aa)%3B Fasta score E(): 0%2C 76.4%25 identity in 513 aa overlap and to Streptomyces coelicolor SCH69.15%2C possible protein phosphatase%2C TR:Q9XA19 (EMBL:AL079308) (515 aa)%3B Fasta score E(): 0%2C 40.2%25 identity in 532 aa overlap. Also similar to many other proteins of undefined function. Previously sequenced as TR:Q50188 (EMBL:Z70722) (509 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 509 aa overlap. Contains hydrophobic%2C possible membrane-spanning region. Proline-rich C-terminus.;gbkey=CDS;gene=ML0020;product=conserved hypothetical protein;protein_id=CAC29528.1;transl_table=11
AL450380.1	EMBL	gene	26584	27051	.	-	.	ID=gene-ML0021;Name=ML0021;gbkey=Gene;gene=ML0021;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	26584	27051	.	-	0	ID=cds-CAC29529.1;Parent=gene-ML0021;Dbxref=InterPro:IPR000253,InterPro:IPR008984,UniProtKB/TrEMBL:Q7AQP5,NCBI_GP:CAC29529.1;Name=CAC29529.1;Note=Similar to M. tuberculosis Rv0019c%2C hypothetical protein%2C TR:P71589 and to Streptomyces coelicolor SCH69.14%2C hypothetical protein%2C TR:Q9XA20 (EMBL:AL079308) (172 aa)%3B Fasta score E(): 2e-21%2C 44.4%25 identity in 171 aa overlap. Previously sequenced as TR:Q50189 (EMBL:Z70722) (155 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 155 aa overlap. Contains Pfam match to entry PF00498 FHA%2C FHA domain.%3B~Similar at the C-terminus to ML2076;gbkey=CDS;gene=ML0021;product=conserved hypothetical protein;protein_id=CAC29529.1;transl_table=11
AL450380.1	EMBL	sequence_feature	26611	26805	.	-	.	ID=id-ML0021;Note=Pfam match to entry PF00498 FHA%2C FHA domain%2C score 74.50%2C E-value 2.2e-18;gbkey=misc_feature;gene=ML0021
AL450380.1	EMBL	ribosome_entry_site	27058	27063	.	-	.	ID=id-AL450380.1:27058..27063;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	27173	28639	.	-	.	ID=gene-ML0022;Name=ML0022;gbkey=Gene;gene=ML0022;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	27173	28639	.	-	0	ID=cds-CAC29530.1;Parent=gene-ML0022;Dbxref=InterPro:IPR000253,InterPro:IPR008984,InterPro:IPR022128,UniProtKB/TrEMBL:Q9CDE4,NCBI_GP:CAC29530.1;Name=CAC29530.1;Note=Similar to M. tuberculosis Rv0020c%2C hypothetical protein%2C TR:P71590 (EMBL:AL123456) (527 aa)%3B Fasta score E(): 0%2C 71.9%25 identity in 531 aa overlap. Previously sequenced as TR:Q50190 (EMBL:Z70722) (463 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 463 aa overlap. Contains Pfam match to entry PF00498 FHA%2C FHA domain.%3B~Similar at the C-terminus to ML2076;gbkey=CDS;gene=ML0022;product=conserved hypothetical protein;protein_id=CAC29530.1;transl_table=11
AL450380.1	EMBL	sequence_feature	27203	27394	.	-	.	ID=id-ML0022;Note=Pfam match to entry PF00498 FHA%2C FHA domain%2C score 89.70%2C E-value 5.9e-23;gbkey=misc_feature;gene=ML0022
AL450380.1	EMBL	gene	28890	28972	.	+	.	ID=gene-leuT;Name=leuT;gbkey=Gene;gene=leuT;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	28890	28972	.	+	.	ID=rna-leuT;Parent=gene-leuT;Note=tRNA Leu anticodon CAG%2C Cove score 63.58;gbkey=tRNA;gene=leuT;product=tRNA-Leu
AL450380.1	EMBL	exon	28890	28972	.	+	.	ID=exon-leuT-1;Parent=rna-leuT;Note=tRNA Leu anticodon CAG%2C Cove score 63.58;gbkey=tRNA;gene=leuT;product=tRNA-Leu
AL450380.1	EMBL	gene	28954	29265	.	-	.	ID=gene-ML0023;Name=ML0023;gbkey=Gene;gene=ML0023;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	28954	29265	.	-	0	ID=cds-CAC29531.1;Parent=gene-ML0023;Dbxref=UniProtKB/TrEMBL:Q9CDE3,NCBI_GP:CAC29531.1;Name=CAC29531.1;Note=Improbable CDS%2C possibly the remains of a disrupted gene.;gbkey=CDS;gene=ML0023;product=hypothetical protein;protein_id=CAC29531.1;transl_table=11
AL450380.1	EMBL	gene	29775	30026	.	+	.	ID=gene-ML0024;Name=ML0024;gbkey=Gene;gene=ML0024;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	29775	30026	.	+	0	ID=cds-CAC29532.1;Parent=gene-ML0024;Dbxref=UniProtKB/TrEMBL:Q9CDE2,NCBI_GP:CAC29532.1;Name=CAC29532.1;Note=Unknown function.;gbkey=CDS;gene=ML0024;product=hypothetical protein;protein_id=CAC29532.1;transl_table=11
AL450380.1	EMBL	gene	30293	30583	.	-	.	ID=gene-ML0025;Name=ML0025;gbkey=Gene;gene=ML0025;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	30293	30583	.	-	0	ID=cds-CAC29533.1;Parent=gene-ML0025;Dbxref=UniProtKB/TrEMBL:Q9CDE1,NCBI_GP:CAC29533.1;Name=CAC29533.1;Note=Unknown function.;gbkey=CDS;gene=ML0025;product=hypothetical protein;protein_id=CAC29533.1;transl_table=11
AL450380.1	EMBL	pseudogene	31015	31651	.	-	.	ID=gene-PPE;Name=PPE;gbkey=Gene;gene=PPE;gene_biotype=pseudogene;gene_synonym=ML0026;pseudo=true
AL450380.1	EMBL	CDS	31015	31651	.	-	0	ID=cds-PPE;Parent=gene-PPE;Note=Possible pseudogene of M. tuberculosis orthologue PPE (Best blastx score 99);gbkey=CDS;gene=PPE;product=PPE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	32113	32920	.	-	.	ID=gene-ML0027;Name=ML0027;gbkey=Gene;gene=ML0027;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	32113	32920	.	-	0	ID=cds-ML0027;Parent=gene-ML0027;Note=Possible pseudogene of M. tuberculosis orthologue Rv0037c (Best blastx score 178);gbkey=CDS;gene=ML0027;product=probable membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	33100	33705	.	+	.	ID=gene-ML0028;Name=ML0028;gbkey=Gene;gene=ML0028;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	33100	33705	.	+	0	ID=cds-CAC29536.1;Parent=gene-ML0028;Dbxref=InterPro:IPR003774,NCBI_GP:CAC29536.1;Name=CAC29536.1;Note=Similar to M. tuberculosis Rv0038%2C hypothetical protein%2C TR:P71608 (EMBL:AL123456) (202 aa)%3B Fasta score E(): 0%2C 88.1%25 identity in 202 aa overlap. Similar to Streptomyces coelicolor SCE59.07C%2C hypothetical protein%2C TR:CAB72194 (EMBL:AL138851) (193 aa)%3B Fasta score E(): 3.5e-28%2C 45.6%25 identity in 182 aa overlap and shows weak similarity to many other bacterial hypothetical proteins. Previously sequenced as TR:Q50191 (EMBL:Z70722) (202 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 201 aa overlap.;gbkey=CDS;gene=ML0028;product=conserved hypothetical protein;protein_id=CAC29536.1;transl_table=11
AL450380.1	EMBL	gene	34033	34638	.	-	.	ID=gene-ML0029;Name=ML0029;gbkey=Gene;gene=ML0029;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	34033	34638	.	-	0	ID=cds-CAC29537.1;Parent=gene-ML0029;Dbxref=InterPro:IPR016833,UniProtKB/TrEMBL:Q9CDE0,NCBI_GP:CAC29537.1;Name=CAC29537.1;Note=Contains a region similar to part of several bacterial hypothetical membrane proteins e.g. Streptomyces coelicolor SC4B5.06%2C putative transmembrane protein%2C TR:Q9ZBW2 (EMBL:AL034443) (345 aa)%3B Fasta score E(): 2.4e-14%2C 54.1%25 identity in 109 aa overlap. The coding frame predicted by GC frameplot changes to either side of this region of similarity%2C suggesting that an ancestral CDS was disrupted. Given this%2C ML0029 may not be functional. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0029;product=possible membrane protein;protein_id=CAC29537.1;transl_table=11
AL450380.1	EMBL	gene	34750	35091	.	-	.	ID=gene-ML0030;Name=ML0030;gbkey=Gene;gene=ML0030;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	34750	35091	.	-	0	ID=cds-CAC29538.1;Parent=gene-ML0030;Dbxref=GOA:O32871,NCBI_GP:CAC29538.1;Name=CAC29538.1;Note=Similar to M. tuberculosis Rv0039c%2C hypothetical protein%2C TR:P71696 (EMBL:AL123456) (115 aa)%3B Fasta score E(): 2.2e-25%2C 63.2%25 identity in 114 aa overlap. Previously sequenced as TR:O32871 (EMBL:Z70722) (113 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 113 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0030;product=putative membrane protein;protein_id=CAC29538.1;transl_table=11
AL450380.1	EMBL	gene	35287	36123	.	-	.	ID=gene-ML0031;Name=ML0031;gbkey=Gene;gene=ML0031;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	35287	36123	.	-	0	ID=cds-CAC29539.1;Parent=gene-ML0031;Dbxref=InterPro:IPR019674,NCBI_GP:CAC29539.1;Name=CAC29539.1;Note=Similar to M. tuberculosis MTC28%2C Rv0040c%2C proline rich 28 KDa antigen precursoR%2C SW:PR28_MYCTU (P71697) (311 aa)%3B Fasta score E(): 0%2C 65.1%25 identity in 258 aa overlap. Previously sequenced as TR:O33075 (EMBL:Y14967) (278 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 278 aa overlap. Contains a probable N-terminal signal sequence.%3B~C-terminal half is similar to a region of ML0246;gbkey=CDS;gene=ML0031;product=CAC29539.1;protein_id=CAC29539.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	36133	36137	.	-	.	ID=id-AL450380.1:36133..36137;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	36321	39239	.	+	.	ID=gene-leuS;Name=leuS;gbkey=Gene;gene=leuS;gene_biotype=protein_coding;gene_synonym=ML0032
AL450380.1	EMBL	CDS	36321	39239	.	+	0	ID=cds-CAC29540.1;Parent=gene-leuS;Dbxref=GOA:Q50192,InterPro:IPR001412,InterPro:IPR002302,InterPro:IPR009008,InterPro:IPR009080,InterPro:IPR013155,InterPro:IPR014729,InterPro:IPR015413,InterPro:IPR025709,NCBI_GP:CAC29540.1;Name=CAC29540.1;Note=Similar to M. tuberculosis leuS%2C leucyl-tRNA synthetase%2C SW:SYL_MYCTU (P71698) (969 aa)%3B Fasta score E(): 0%2C 83.6%25 identity in 972 aa overlap and to Bacillus subtilis leuS%2C leucyl-tRNA synthetase%2C SW:SYL_BACSU (P36430) (804 aa)%3B Fasta score E(): 0%2C 45.7%25 identity in 941 aa overlap. Previously sequenced as SW:SYL_MYCLE (Q50192) (972 aa)%3B Fasta score E(): 0%2C 99.9%25 identity in 972 aa overlap. Contains Pfam match to entry PF00133 tRNA-synt_1%2C tRNA synthetases class I (I%2C L%2C M and V). Contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature.;gbkey=CDS;gene=leuS;product=leucyl-tRNA synthase;protein_id=CAC29540.1;transl_table=11
AL450380.1	EMBL	sequence_feature	36480	38816	.	+	.	ID=id-leuS;Note=Pfam match to entry PF00133 tRNA-synt_1%2C tRNA synthetases class I (I%2C L%2C M and V)%2C score 241.00%2C E-value 1.7e-68;gbkey=misc_feature;gene=leuS
AL450380.1	EMBL	sequence_feature	36558	36590	.	+	.	ID=id-leuS-2;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature;gbkey=misc_feature;gene=leuS
AL450380.1	EMBL	repeat_region	39269	39991	.	+	.	ID=id-AL450380.1:39269..39991;Note=Dispersed repeat%2C RLEP%2C copy 1;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	39947	40211	.	+	.	ID=gene-ML0033;Name=ML0033;gbkey=Gene;gene=ML0033;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	39947	40211	.	+	0	ID=cds-ML0033;Parent=gene-ML0033;Note=Possible pseudogene similar to M. tuberculosis paralogue Rv3906c (Best blastx score 95);gbkey=CDS;gene=ML0033;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	40825	41032	.	+	.	ID=gene-ML0034;Name=ML0034;gbkey=Gene;gene=ML0034;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	40825	41032	.	+	0	ID=cds-ML0034;Parent=gene-ML0034;Note=Possible pseudogene of M. tuberculosis orthologue Rv3890c (Best blastx score 54);gbkey=CDS;gene=ML0034;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	42222	43083	.	+	.	ID=gene-ML0035;Name=ML0035;gbkey=Gene;gene=ML0035;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	42222	43083	.	+	0	ID=cds-ML0035;Parent=gene-ML0035;Note=Possible pseudogene of M. tuberculosis orthologue Rv3888c (Best blastx score 182);gbkey=CDS;gene=ML0035;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	43199	43699	.	+	.	ID=gene-ML0036;Name=ML0036;gbkey=Gene;gene=ML0036;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	43199	43699	.	+	0	ID=cds-ML0036;Parent=gene-ML0036;Note=Possible pseudogene of M. tuberculosis orthologue Rv3887c (Best blastx score 186);gbkey=CDS;gene=ML0036;product=probable membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	44077	45332	.	+	.	ID=gene-ML0037;Name=ML0037;gbkey=Gene;gene=ML0037;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	44077	45332	.	+	0	ID=cds-ML0037;Parent=gene-ML0037;Note=Possible pseudogene of M. tuberculosis orthologue Rv3886c (Best blastx score 160);gbkey=CDS;gene=ML0037;product=protease (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	45397	46827	.	+	.	ID=gene-ML0038;Name=ML0038;gbkey=Gene;gene=ML0038;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	45397	46827	.	+	0	ID=cds-ML0038;Parent=gene-ML0038;Note=Possible pseudogene of M. tuberculosis orthologue Rv3885c (Best blastx score 128);gbkey=CDS;gene=ML0038;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	stem_loop	45886	45945	.	-	.	ID=id-AL450380.1:45886..45945;Note=60 bp palindrome;gbkey=stem_loop
AL450380.1	EMBL	pseudogene	47271	48642	.	+	.	ID=gene-ML0039;Name=ML0039;gbkey=Gene;gene=ML0039;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	47271	48642	.	+	0	ID=cds-ML0039;Parent=gene-ML0039;Note=Possible pseudogene of M. tuberculosis orthologue Rv3884c (Best blastx score 288);gbkey=CDS;gene=ML0039;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	49168	50496	.	+	.	ID=id-AL450380.1:49168..50496;Note=1329 bp repeat. 100%25 identical to region 3042159..3043487;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	49689	49946	.	-	.	ID=gene-ML0040;Name=ML0040;gbkey=Gene;gene=ML0040;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	49689	49946	.	-	0	ID=cds-ML0040;Parent=gene-ML0040;Note=Possible transposase remnant%2C similar to the N-terminus of M.tuberculosis Rv2424c%2C probable transposase for IS1558%2C TR:P71924;gbkey=CDS;gene=ML0040;product=putative transposase remnant;pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	50644	50647	.	+	.	ID=id-AL450380.1:50644..50647;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	50656	51996	.	+	.	ID=gene-ML0041;Name=ML0041;gbkey=Gene;gene=ML0041;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	50656	51996	.	+	0	ID=cds-CAC29549.1;Parent=gene-ML0041;Dbxref=GOA:Q7AQP4,InterPro:IPR000209,InterPro:IPR015500,InterPro:IPR023834,UniProtKB/TrEMBL:Q7AQP4,NCBI_GP:CAC29549.1;Name=CAC29549.1;Note=Similar to M. tuberculosis putative proteases e.g. Rv3883c%2C probable secreted protease%2C TR:O05461 (EMBL:AL123456) (446 aa)%3B Fasta score E(): 0%2C 79.1%25 identity in 446 aa overlap. Shows weaker similarity to known bacterial proteases e.g. Bacteroides nodosus aprV5%2C acidic protease V5%2C TR:Q46541 (EMBL:L18984) (595 aa)%3B Fasta score E(): 1.8e-07%2C 28.1%25 identity in 442 aa overlap. Previously sequenced as TR:O33076 (EMBL:Y14967) (446 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 446 aa overlap. Contains a probable N-terminal signal sequence. Contains 2 Pfam matches to entry PF00082 Peptidase_S8%2C Subtilase family.%3B~Similar to ML1538 and ML2528;gbkey=CDS;gene=ML0041;product=probable secreted protease;protein_id=CAC29549.1;transl_table=11
AL450380.1	EMBL	sequence_feature	50860	51102	.	+	.	ID=id-ML0041;Note=Pfam match to entry PF00082 Peptidase_S8%2C Subtilase family%2C score 13.30%2C E-value 0.011;gbkey=misc_feature;gene=ML0041
AL450380.1	EMBL	sequence_feature	51184	51819	.	+	.	ID=id-ML0041-2;Note=Pfam match to entry PF00082 Peptidase_S8%2C Subtilase family%2C score 56.80%2C E-value 8.5e-15;gbkey=misc_feature;gene=ML0041
AL450380.1	EMBL	gene	51993	53396	.	+	.	ID=gene-ML0042;Name=ML0042;gbkey=Gene;gene=ML0042;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	51993	53396	.	+	0	ID=cds-CAC29550.1;Parent=gene-ML0042;Dbxref=InterPro:IPR021368,UniProtKB/TrEMBL:Q7AQP3,NCBI_GP:CAC29550.1;Name=CAC29550.1;Note=Similar to M. tuberculosis Rv3882c%2C conserved hypothetical protein%2C TR:O05462 (EMBL:AL123456) (462 aa)%3B Fasta score E(): 0%2C 72.1%25 identity in 462 aa overlap. Shows weak similarity to M.tuberculosis Rv3885c%2C hypothetical protein%2C TR:O05459 (EMBL:AL123456) (537 aa)%3B Fasta score E(): 3.1e-09%2C 28.0%25 identity in 382 aa overlap. Previously sequenced as TR:O33077 (EMBL:Y14967) (467 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 467 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions near the N-terminus.%3B~Shows weak similarity to ML1537;gbkey=CDS;gene=ML0042;product=putative membrane protein;protein_id=CAC29550.1;transl_table=11
AL450380.1	EMBL	pseudogene	53719	54695	.	+	.	ID=gene-ML0043;Name=ML0043;gbkey=Gene;gene=ML0043;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	53719	54695	.	+	0	ID=cds-ML0043;Parent=gene-ML0043;Note=Possible pseudogene of M. tuberculosis orthologue Rv3881c (Best blastx score 163);gbkey=CDS;gene=ML0043;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	54684	54689	.	+	.	ID=id-ML0043;Parent=gene-ML0043;Note=possible RBS;gbkey=regulatory;gene=ML0043;pseudo=true;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	54698	55039	.	+	.	ID=gene-ML0044;Name=ML0044;gbkey=Gene;gene=ML0044;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	54698	55039	.	+	0	ID=cds-CAC29552.1;Parent=gene-ML0044;Dbxref=GOA:Q7AQP2,InterPro:IPR004401,UniProtKB/TrEMBL:Q7AQP2,NCBI_GP:CAC29552.1;Name=CAC29552.1;Note=Similar to M. tuberculosis Rv3880c%2C hypothetical protein%2C TR:O69744 (EMBL:AL123456) (115 aa)%3B Fasta score E(): 2.6e-21%2C 56.4%25 identity in 110 aa overlap. Previously sequenced as TR:O33080 (EMBL:Y14967) (113 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 113 aa overlap.;gbkey=CDS;gene=ML0044;product=CAC29552.1;protein_id=CAC29552.1;transl_table=11
AL450380.1	EMBL	pseudogene	55581	56699	.	+	.	ID=gene-ML0045;Name=ML0045;gbkey=Gene;gene=ML0045;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	55581	56699	.	+	0	ID=cds-ML0045;Parent=gene-ML0045;Note=Possible pseudogene of M. tuberculosis orthologue Rv3879c (Best blastx score 189);gbkey=CDS;gene=ML0045;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	57567	57922	.	-	.	ID=gene-ML0046;Name=ML0046;gbkey=Gene;gene=ML0046;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	57567	57922	.	-	0	ID=cds-ML0046;Parent=gene-ML0046;Note=Possible pseudogene of M. tuberculosis orthologue Rv3878 (Best blastx score 118;gbkey=CDS;gene=ML0046;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	58020	59558	.	-	.	ID=gene-ML0047;Name=ML0047;gbkey=Gene;gene=ML0047;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	58020	59558	.	-	0	ID=cds-CAC29555.1;Parent=gene-ML0047;Dbxref=InterPro:IPR006707,InterPro:IPR024962,UniProtKB/TrEMBL:Q9CDD9,NCBI_GP:CAC29555.1;Name=CAC29555.1;Note=Similar to M. tuberculosis putative membrane protein e.g. Rv3877%2C hypothetical protein%2C TR:O69741 (EMBL:AL123456) (511 aa)%3B Fasta score E(): 0%2C 74.0%25 identity in 512 aa overlap. Similarity is weaker to Rv1795%2C probable membrane protein%2C TR:O53944 (EMBL:AL123456) (503 aa)%3B Fasta score E(): 2.1e-13%2C 22.7%25 identity in 519 aa overlap and Rv0290%2C hydrophobic protein%2C TR:O86362 (EMBL:AL123456) (472 aa)%3B Fasta score E(): 2.4e-11%2C 26.6%25 identity in 512 aa overlap. Previously sequenced as TR:O33081 (EMBL:Y14967) (480 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 480 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.%3B~Similar to ML1539 and ML2529;gbkey=CDS;gene=ML0047;product=putative membrane protein;protein_id=CAC29555.1;transl_table=11
AL450380.1	EMBL	gene	59555	61315	.	-	.	ID=gene-ML0048;Name=ML0048;gbkey=Gene;gene=ML0048;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	59555	61315	.	-	0	ID=cds-CAC29556.1;Parent=gene-ML0048;Dbxref=InterPro:IPR025669,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CDD8,NCBI_GP:CAC29556.1;Name=CAC29556.1;Note=Has a proline-rich N-terminus. Similar to several proteins from M. tuberculosis%2C some of which also contain proline-rich regions e.g. M.tuberculosis Rv3876%2C hypothetical protein%2C TR:O69740 (EMBL:AL123456) (666 aa)%3B Fasta score E(): 0%2C 50.7%25 identity in 672 aa overlap%2C and Rv0530%2C hypothetical protein%2C TR:O06396 (EMBL:AL123456) (405 aa)%3B Fasta score E(): 1.3e-19%2C 30.5%25 identity in 417 aa overlap. Similar to the C-terminal half of Streptomyces coelicolor SC3C3.03C%2C hypothetical protein%2C TR:O86637 (EMBL:AL031231) (1083 aa)%3B Fasta score E(): 5.9e-27%2C 31.6%25 identity in 580 aa overlap%2C which contains Pro-Gln repeats. Previously sequenced as TR:O33082 (EMBL:Y14967) (478 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 478 aa overlap.%3B~C-terminal half is similar to that of ML0798;gbkey=CDS;gene=ML0048;product=conserved hypothetical protein;protein_id=CAC29556.1;transl_table=11
AL450380.1	EMBL	gene	61406	61693	.	-	.	ID=gene-ML0049;Name=ML0049;gbkey=Gene;gene=ML0049;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	61406	61693	.	-	0	ID=cds-CAC29557.1;Parent=gene-ML0049;Dbxref=GOA:Q50206,InterPro:IPR010310,NCBI_GP:CAC29557.1;Name=CAC29557.1;Note=Similar to M. tuberculosis ESAT6%2C Rv3875%2C 6 KDa early secretory antigenic target%2C SW:ESA6_MYCTU (Q57165) (94 aa)%3B Fasta score E(): 4.2e-10%2C 36.3%25 identity in 91 aa overlap. Also shows weak similarity to others e.g. M.tuberculosis CFP7%2C Rv0288%2C 10 KDa antigen%2C SW:CFP7_MYCTU (O53693) (95 aa)%3B Fasta score E(): 0.17%2C 25.6%25 identity in 78 aa overlap. Other members of this family include Rv3019c%2C hypothetical protein%2C TR:O53266 and Rv3444c%2C hypothetical protein%2C TR:O06261. Previously sequenced as SW:ESA6_MYCLE (Q50206) (95 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 95 aa overlap.;gbkey=CDS;gene=ML0049;product=possible secreted protein;protein_id=CAC29557.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	61700	61703	.	-	.	ID=id-AL450380.1:61700..61703;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	61720	62022	.	-	.	ID=gene-ML0050;Name=ML0050;gbkey=Gene;gene=ML0050;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	61720	62022	.	-	0	ID=cds-CAC29558.1;Parent=gene-ML0050;Dbxref=InterPro:IPR010310,NCBI_GP:CAC29558.1;Name=CAC29558.1;Note=Similar to M. tuberculosis lhp%2C Rv3874%2C culture filtrate protein 10 kDa CFP-10%2C TR:O69739 (EMBL:AF004671) (100 aa)%3B Fasta score E(): 1.8e-10%2C 40.0%25 identity in 100 aa overlap. Also shows weak similarity to others e.g. M. tuberculosis Rv1197%2C hypothetical protein%2C TR:O05299 (EMBL:AL123456) (98 aa)%3B Fasta score E(): 0.061%2C 21.9%25 identity in 96 aa overlap%2C and Rv1038c%2C hypothetical protein%2C TR:P96363 (EMBL:AL123456) (98 aa)%3B Fasta score E(): 0.084%2C 21.9%25 identity in 96 aa overlap. These and others form a protein family typically found downstream of a member of the ESAT6 family. Other members include . Previously sequenced as TR:O33084 (EMBL:Y14967) (100 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 100 aa overlap.;gbkey=CDS;gene=ML0050;product=possible secreted protein;protein_id=CAC29558.1;transl_table=11
AL450380.1	EMBL	gene	62201	63109	.	-	.	ID=gene-ML0051;Name=ML0051;gbkey=Gene;gene=ML0051;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	62201	63109	.	-	0	ID=cds-CAC29559.1;Parent=gene-ML0051;Dbxref=InterPro:IPR000030,UniProtKB/TrEMBL:Q7AQP1,NCBI_GP:CAC29559.1;Name=CAC29559.1;Note=Similar to PPE-family proteins from M. tuberculosis e.g. Rv3873%2C PPE-family protein%2C TR:O69738 (EMBL:AL123456) (368 aa)%3B Fasta score E(): 6.1e-32%2C 46.2%25 identity in 288 aa overlap. Lacks the PPE motif at the N-terminus. Previously sequenced as TR:O33085 (EMBL:Y14967) (302 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 302 aa overlap. Contains Pfam match to entry PF00823 PPE%2C PPE family.%3B~N-terminus is similar to the N-termini of ML0539%2C ML1828 and ML1991;gbkey=CDS;gene=ML0051;product=PPE-family protein;protein_id=CAC29559.1;transl_table=11
AL450380.1	EMBL	sequence_feature	62720	63082	.	-	.	ID=id-ML0051;Note=Pfam match to entry PF00823 PPE%2C PPE family%2C score -37.40%2C E-value 1e-05;gbkey=misc_feature;gene=ML0051
AL450380.1	EMBL	ribosome_entry_site	63118	63121	.	-	.	ID=id-AL450380.1:63118..63121;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	63319	65112	.	-	.	ID=gene-ML0052;Name=ML0052;gbkey=Gene;gene=ML0052;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	63319	65112	.	-	0	ID=cds-CAC29560.1;Parent=gene-ML0052;Dbxref=GOA:Q9CDD7,InterPro:IPR002543,InterPro:IPR003593,InterPro:IPR023837,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CDD7,NCBI_GP:CAC29560.1;Name=CAC29560.1;Note=Similar to putative ATP/GTP-binding proteins from M. tuberculosis and Streptomyces coelicolor e.g. M. tuberculosis Rv3871%2C hypothetical protein%2C TR:O69736 (EMBL:AL123456) (591 aa)%3B Fasta score E(): 0%2C 80.9%25 identity in 596 aa overlap. In several of these cases this protein is similar to the C-terminal half of a larger protein%2C while the upstream ML0053 is similar to the corresponding N-terminal half e.g. M. tuberculosis Rv3447c%2C unknown membrane protein%2C TR:O06264 (EMBL:AL123456) (1236 aa)%3B Fasta score E(): 0%2C 35.2%25 identity in 588 aa overlap and Streptomyces coelicolor SC3C3.20C%2C ATP/GTP binding protein%2C TR:O86653 (EMBL:AL031231) (1321 aa)%3B Fasta score E(): 0%2C 35.0%25 identity in 575 aa overlap. Related proteins are also found in Bacillus spp. Previously sequenced as TR:O33086 (EMBL:Y14967) (597 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 597 aa overlap. Contains 2 Pfam matches to entry PF01580 FtsK_SpoIIIE%2C FtsK/SpoIIIE family. Contains 2 x PS00017 ATP/GTP-binding site motif A (P-loop).%3B~Similar to the C-terminal halves of ML1543 and ML2535;gbkey=CDS;gene=ML0052;product=conserved hypothetical protein;protein_id=CAC29560.1;transl_table=11
AL450380.1	EMBL	sequence_feature	63559	64119	.	-	.	ID=id-ML0052;Note=Pfam match to entry PF01580 FtsK_SpoIIIE%2C FtsK/SpoIIIE family%2C score 178.70%2C E-value 9.4e-50;gbkey=misc_feature;gene=ML0052
AL450380.1	EMBL	sequence_feature	63961	63984	.	-	.	ID=id-ML0052-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML0052
AL450380.1	EMBL	sequence_feature	64234	64992	.	-	.	ID=id-ML0052-3;Note=Pfam match to entry PF01580 FtsK_SpoIIIE%2C FtsK/SpoIIIE family%2C score 162.10%2C E-value 9.2e-45;gbkey=misc_feature;gene=ML0052
AL450380.1	EMBL	sequence_feature	64837	64860	.	-	.	ID=id-ML0052-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML0052
AL450380.1	EMBL	ribosome_entry_site	65124	65127	.	-	.	ID=id-AL450380.1:65124..65127;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	65186	67420	.	-	.	ID=gene-ML0053;Name=ML0053;gbkey=Gene;gene=ML0053;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	65186	67420	.	-	0	ID=cds-CAC29561.1;Parent=gene-ML0053;Dbxref=GOA:Q7AQP0,InterPro:IPR002543,InterPro:IPR023836,InterPro:IPR027417,UniProtKB/TrEMBL:Q7AQP0,NCBI_GP:CAC29561.1;Name=CAC29561.1;Note=Similar to putative ATP/GTP-binding proteins from M. tuberculosis and Streptomyces coelicolor e.g. M. tuberculosis Rv3870%2C hypothetical protein%2C TR:O69735 (EMBL:AL123456) (747 aa)%3B Fasta score E(): 0%2C 85.4%25 identity in 746 aa overlap. In several of these cases this protein is similar to the N-terminal half of a larger protein%2C while the downstream ML0052 is similar to the corresponding C-terminal half e.g. M.tuberculosis Rv3447c%2C unknown membrane protein%2C TR:O06264 (EMBL:AL123456) (1236 aa)%3B Fasta score E(): 0%2C 37.2%25 identity in 732 aa overlap and Streptomyces coelicolor SC3C3.20C%2C ATP/GTP binding protein%2C TR:O86653 (EMBL:AL031231) (1321 aa)%3B Fasta score E(): 0%2C 34.7%25 identity in 760 aa overlap. Related proteins are also found in Bacillus spp. Contains hydrophobic%2C possible membrane-spanning region near the N-terminus. Contains Pfam match to entry PF01580 FtsK_SpoIIIE%2C FtsK/SpoIIIE family. Contains PS00017 ATP/GTP-binding site motif A (P-loop).%3B~Similar to the N-terminal halves of ML1543 and ML2535;gbkey=CDS;gene=ML0053;product=putative membrane protein;protein_id=CAC29561.1;transl_table=11
AL450380.1	EMBL	sequence_feature	65513	66145	.	-	.	ID=id-ML0053;Note=Pfam match to entry PF01580 FtsK_SpoIIIE%2C FtsK/SpoIIIE family%2C score 250.40%2C E-value 2.4e-71;gbkey=misc_feature;gene=ML0053
AL450380.1	EMBL	sequence_feature	65969	65992	.	-	.	ID=id-ML0053-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML0053
AL450380.1	EMBL	gene	67417	68862	.	-	.	ID=gene-ML0054;Name=ML0054;gbkey=Gene;gene=ML0054;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	67417	68862	.	-	0	ID=cds-CAC29562.1;Parent=gene-ML0054;Dbxref=InterPro:IPR007795,UniProtKB/TrEMBL:Q7AQN9,NCBI_GP:CAC29562.1;Name=CAC29562.1;Note=Similar to several M. tuberculosis hypothetical proteins e.g. Rv3869%2C conserved hypothetical protein%2C TR:O69734 (EMBL:AL123456) (480 aa)%3B Fasta score E(): 0%2C 75.7%25 identity in 478 aa overlap. Previously sequenced as TR:O33088 (EMBL:Y14967) (481 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 481 aa overlap. Contains hydrophobic%2C possible membrane-spanning region near the N-terminus.%3B~Similar to ML1544 and ML2536;gbkey=CDS;gene=ML0054;product=putative membrane protein;protein_id=CAC29562.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	67428	67431	.	-	.	ID=id-ML0054;Parent=gene-ML0054;Note=possible RBS;gbkey=regulatory;gene=ML0054;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	68866	70587	.	-	.	ID=gene-ML0055;Name=ML0055;gbkey=Gene;gene=ML0055;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	68866	70587	.	-	0	ID=cds-CAC29563.1;Parent=gene-ML0055;Dbxref=GOA:O33089,InterPro:IPR000641,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR023835,InterPro:IPR027417,NCBI_GP:CAC29563.1;Name=CAC29563.1;Note=Similar to several M. tuberculosis hypothetical proteins e.g. Rv3868%2C hypothetical protein%2C SW:Y2G8_MYCTU (O69733) (573 aa)%3B Fasta score E(): 0%2C 89.2%25 identity in 573 aa overlap. C-terminus is similar to many members of the CBXX/CFQX family e.g. Bacillus subtilis SpoVK/SpoVJ%2C stage V sporulation protein%2C SW:SP5K_BACSU (P27643) (322 aa)%3B Fasta score E(): 3.5e-26%2C 33.7%25 identity in 332 aa overlap. Previously sequenced as SW:Y2G8_MYCLE (O33089) (573 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 573 aa overlap. Contains Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA). Contains PS00017 ATP/GTP-binding site motif A (P-loop).%3B~Similar to ML1536 and ML2537. Shows weak similarity to ML0798;gbkey=CDS;gene=ML0055;product=conserved hypothetical protein;protein_id=CAC29563.1;transl_table=11
AL450380.1	EMBL	sequence_feature	68872	69603	.	-	.	ID=id-ML0055;Note=Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%2C score 15.30%2C E-value 1.7e-06;gbkey=misc_feature;gene=ML0055
AL450380.1	EMBL	sequence_feature	69565	69588	.	-	.	ID=id-ML0055-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML0055
AL450380.1	EMBL	gene	70584	71093	.	-	.	ID=gene-ML0056;Name=ML0056;gbkey=Gene;gene=ML0056;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	70584	71093	.	-	0	ID=cds-CAC29564.1;Parent=gene-ML0056;Dbxref=InterPro:IPR025734,UniProtKB/TrEMBL:Q9CDD6,NCBI_GP:CAC29564.1;Name=CAC29564.1;Note=Similar to M. tuberculosis Rv3867%2C conserved hypothetical protein%2C TR:O06269 (EMBL:AL123456) (184 aa)%3B Fasta score E(): 1.1e-12%2C 38.4%25 identity in 172 aa overlap and to Rv3614c%2C hypothetical protein%2C TR:O69732 (EMBL:AL123456) (183 aa)%3B Fasta score E(): 1e-20%2C 48.2%25 identity in 166 aa overlap. Previously sequenced as TR:Q49730 (EMBL:U00015) (216 aa)%3B Fasta score E(): 1.7e-13%2C 40.2%25 identity in 169 aa overlap.%3B~Similar to ML0407;gbkey=CDS;gene=ML0056;product=conserved hypothetical protein;protein_id=CAC29564.1;transl_table=11
AL450380.1	EMBL	pseudogene	71142	72064	.	-	.	ID=gene-ML0057;Name=ML0057;gbkey=Gene;gene=ML0057;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	71142	72064	.	-	0	ID=cds-ML0057;Parent=gene-ML0057;Note=Possible pseudogene of M. tuberculosis orthologue Rv3866 (Best blastx score 427);gbkey=CDS;gene=ML0057;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	71605	71608	.	-	.	ID=id-ML0057;Parent=gene-ML0057;Note=possible RBS;gbkey=regulatory;gene=ML0057;pseudo=true;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	repeat_region	71670	71773	.	+	.	ID=id-AL450380.1:71670..71773;Note=2 copies of 52 bp repeat%2C Consensus TTGTTGTTGCCAACATTGCGACGCCACTACCGAGTCTCCACTCCCGGTCCGG;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	72683	73686	.	-	.	ID=gene-ML0058;Name=ML0058;gbkey=Gene;gene=ML0058;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	72683	73686	.	-	0	ID=cds-ML0058;Parent=gene-ML0058;Note=Possible pseudogene of M. tuberculosis orthologue Rv3864 (Best blastx score 110);gbkey=CDS;gene=ML0058;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	73074	73136	.	+	.	ID=id-AL450380.1:73074..73136;Note=3 copies of 21 bp repeat%2C Consensus GATCAAGCCAGGAATCAAGTT;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	73832	74366	.	-	.	ID=gene-ML0059;Name=ML0059;gbkey=Gene;gene=ML0059;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	73832	74366	.	-	0	ID=cds-ML0059;Parent=gene-ML0059;Note=Possible pseudogene of M. tuberculosis orthologue Rv3863 (Best blastx score 119);gbkey=CDS;gene=ML0059;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	74457	75125	.	-	.	ID=id-AL450380.1:74457..75125;Note=Dispersed repeat%2C RLEP%2C copy 2;gbkey=repeat_region
AL450380.1	EMBL	stem_loop	75139	75188	.	-	.	ID=id-AL450380.1:75139..75188;Note=50 bp palindrome;gbkey=stem_loop
AL450380.1	EMBL	pseudogene	76494	76713	.	-	.	ID=gene-ML0060;Name=ML0060;gbkey=Gene;gene=ML0060;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	76494	76713	.	-	0	ID=cds-ML0060;Parent=gene-ML0060;Note=Possible pseudogene of M. tuberculosis orthologue Rv3860 (Best blastx score 354);gbkey=CDS;gene=ML0060;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	77709	82292	.	+	.	ID=gene-gltB;Name=gltB;gbkey=Gene;gene=gltB;gene_biotype=protein_coding;gene_synonym=ML0061
AL450380.1	EMBL	CDS	77709	82292	.	+	0	ID=cds-CAC29569.1;Parent=gene-gltB;Dbxref=GOA:Q9CDD5,InterPro:IPR000583,InterPro:IPR002489,InterPro:IPR002932,InterPro:IPR006982,InterPro:IPR013785,InterPro:IPR017932,InterPro:IPR029055,UniProtKB/TrEMBL:Q9CDD5,NCBI_GP:CAC29569.1;Name=CAC29569.1;Note=Similar to M. tuberculosis Rv3859c%2C putative ferredoxin-dependent glutamate synthase%2C TR:P96218 (EMBL:Al123456) (1527 aa)%3B Fasta score E(): 0%2C 90.2%25 identity in 1527 aa overlap and to Synechocystis sp. gltB%2C ferredoxin-dependent glutamate synthase 1%2C SW:GLTB_SYNY3 (P55037) (1550 aa)%3B Fasta score E(): 0%2C 57.2%25 identity in 1525 aa overlap. Contains Pfam match to entry PF01493 DUF14%2C Domain of unknown function. Contains Pfam match to entry PF01645 Glu_synthase%2C Conserved region in glutamate synthase. Contains PS00095 C-5 cytosine-specific DNA methylases C-terminal signature.;gbkey=CDS;gene=gltB;product=putative ferredoxin-dependent glutamate synthase;protein_id=CAC29569.1;transl_table=11
AL450380.1	EMBL	sequence_feature	80163	81278	.	+	.	ID=id-gltB;Note=Pfam match to entry PF01645 Glu_synthase%2C Conserved region in glutamate synthase%2C score 778.30%2C E-value 3.1e-230;gbkey=misc_feature;gene=gltB
AL450380.1	EMBL	sequence_feature	81510	82103	.	+	.	ID=id-gltB-2;Note=Pfam match to entry PF01493 DUF14%2C Domain of unknown function%2C score 324.10%2C E-value 1.6e-93;gbkey=misc_feature;gene=gltB
AL450380.1	EMBL	sequence_feature	81627	81683	.	+	.	ID=id-gltB-3;Note=PS00095 C-5 cytosine-specific DNA methylases C-terminal signature;gbkey=misc_feature;gene=gltB
AL450380.1	EMBL	ribosome_entry_site	82274	82277	.	+	.	ID=id-gltB-4;Parent=gene-gltB;Note=possible RBS;gbkey=regulatory;gene=gltB;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	82285	83751	.	+	.	ID=gene-gltD;Name=gltD;gbkey=Gene;gene=gltD;gene_biotype=protein_coding;gene_synonym=ML0062
AL450380.1	EMBL	CDS	82285	83751	.	+	0	ID=cds-CAC29570.1;Parent=gene-gltD;Dbxref=GOA:Q9CDD4,InterPro:IPR001327,InterPro:IPR006005,InterPro:IPR009051,InterPro:IPR016040,InterPro:IPR017896,InterPro:IPR023753,InterPro:IPR028261,UniProtKB/TrEMBL:Q9CDD4,NCBI_GP:CAC29570.1;Name=CAC29570.1;Note=Similar to M. tuberculosis Rv3858c%2C gltD%2C putative NADH-dependent glutamate synthase small subunit%2C TR:P96219 (EMBL:Al123456) (488 aa)%3B Fasta score E(): 0%2C 87.7%25 identity in 488 aa overlap and to many other putative glutamate synthase small subunits e.g. Escherichia coli gltD%2C glutamate synthase [NADPH] small chain%2C SW:GLTD_ECOLI (P09832) (471 aa)%3B Fasta score E(): 0%2C 37.8%25 identity in 474 aa overlap. Contains Pfam match to entry PF00070 pyr_redox%2C Pyridine nucleotide-disulphide oxidoreductase.;gbkey=CDS;gene=gltD;product=NADH-dependent glutamate synthase small subunit;protein_id=CAC29570.1;transl_table=11
AL450380.1	EMBL	sequence_feature	82723	83619	.	+	.	ID=id-gltD;Note=Pfam match to entry PF00070 pyr_redox%2C Pyridine nucleotide-disulphide oxidoreductase%2C score 114.20%2C E-value 6e-33;gbkey=misc_feature;gene=gltD
AL450380.1	EMBL	pseudogene	84980	85727	.	+	.	ID=gene-ML0063;Name=ML0063;gbkey=Gene;gene=ML0063;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	84980	85727	.	+	0	ID=cds-ML0063;Parent=gene-ML0063;Note=Possible pseudogene of M. tuberculosis orthologue Rv3856c (Best blastx score 211);gbkey=CDS;gene=ML0063;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	85968	86612	.	-	.	ID=gene-ML0064;Name=ML0064;gbkey=Gene;gene=ML0064;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	85968	86612	.	-	0	ID=cds-CAC29572.1;Parent=gene-ML0064;Dbxref=GOA:Q9CDD3,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR011075,InterPro:IPR015893,UniProtKB/TrEMBL:Q9CDD3,NCBI_GP:CAC29572.1;Name=CAC29572.1;Note=Similar to M. tuberculosis Rv3855%2C putative transcriptional regulator%2C TR:P96222 (EMBL:Al123456) (216 aa)%3B Fasta score E(): 0%2C 77.0%25 identity in 213 aa overlap. Contains a probable helix-turn-helix motif at aa 45-66 (Score 1261%2C SD +3.48) Contains Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family.%3B~Similar to ML1070;gbkey=CDS;gene=ML0064;product=putative transcriptional regulator;protein_id=CAC29572.1;transl_table=11
AL450380.1	EMBL	sequence_feature	86388	86528	.	-	.	ID=id-ML0064;Note=Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family%2C score 56.20%2C E-value 5.6e-13;gbkey=misc_feature;gene=ML0064
AL450380.1	EMBL	gene	86681	88165	.	+	.	ID=gene-ML0065;Name=ML0065;gbkey=Gene;gene=ML0065;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	86681	88165	.	+	0	ID=cds-CAC29573.1;Parent=gene-ML0065;Dbxref=GOA:Q7AQN8,UniProtKB/TrEMBL:Q7AQN8,NCBI_GP:CAC29573.1;Name=CAC29573.1;Note=Similar to putative monooxygenases from M. tuberculosis e.g. Rv3854c%2C probable monooxygenase%2C TR:P96223 (EMBL:AL123456) (489 aa)%3B Fasta score E(): 0%2C 80.1%25 identity in 488 aa overlap. Others are Rv0892 and Rv1393c. Also similar to the C-terminal half of Deinococcus radiodurans plasmid MP1 DRB0033%2C putative arylesterase/monoxygenase%2C TR:Q9RZT0 (EMBL:AE001826) (833 aa)%3B Fasta score E(): 0%2C 51.5%25 identity in 480 aa overlap. Shows weaker similarity to Rhodococcus rhodochrous steroid monooxygenase%2C TR:O50641 (EMBL:AB010439) (549 aa)%3B Fasta score E(): 2e-15%2C 24.9%25 identity in 469 aa overlap. Contains Pfam match to entry PF00743 FMO-like%2C Flavin-binding monooxygenase-like.%3B~Similar to pseudogene ML1732;gbkey=CDS;gene=ML0065;product=putative monooxygenase;protein_id=CAC29573.1;transl_table=11
AL450380.1	EMBL	sequence_feature	86714	88111	.	+	.	ID=id-ML0065;Note=Pfam match to entry PF00743 FMO-like%2C Flavin-binding monooxygenase-like%2C score -279.10%2C E-value 1.7e-07;gbkey=misc_feature;gene=ML0065
AL450380.1	EMBL	gene	88246	88719	.	-	.	ID=gene-menG;Name=menG;gbkey=Gene;gene=menG;gene_biotype=protein_coding;gene_synonym=ML0066
AL450380.1	EMBL	CDS	88246	88719	.	-	0	ID=cds-CAC29574.1;Parent=gene-menG;Dbxref=GOA:Q9CDD2,InterPro:IPR005493,InterPro:IPR010203,NCBI_GP:CAC29574.1;Name=CAC29574.1;Note=Similar to M. tuberculosis Rv3853%2C menG%2C putative S-adenosylmethionine:2-demethylmenaquinone methyltransferase%2C TR:P96224 (EMBL:AL123456) (157 aa)%3B Fasta score E(): 0%2C 87.1%25 identity in 155 aa overlap. Similar to Escherichia coli menG%2C S-adenosylmethionine:2-demethylmenaquinone methyltransferase%2C SW:MENG_ECOLI (P32165) (161 aa)%3B Fasta score E(): 2.4e-20%2C 45.6%25 identity in 149 aa overlap.;gbkey=CDS;gene=menG;product=putative S-adenosylmethionine:2-demethylmenaquinone methyltransferase;protein_id=CAC29574.1;transl_table=11
AL450380.1	EMBL	gene	88741	89106	.	-	.	ID=gene-hns;Name=hns;gbkey=Gene;gene=hns;gene_biotype=protein_coding;gene_synonym=ML0067
AL450380.1	EMBL	CDS	88741	89106	.	-	0	ID=cds-CAC29575.1;Parent=gene-hns;Dbxref=UniProtKB/TrEMBL:Q9CDD1,NCBI_GP:CAC29575.1;Name=CAC29575.1;Note=Similar to M. tuberculosis Rv3852%2C hns%2C HU-histone protein%2C TR:P96225 (EMBL:AL123456) (134 aa)%3B Fasta score E(): 6.1e-12%2C 51.5%25 identity in 134 aa overlap. Contains PAKKX repeats similar to those in histone H1 proteins.;gbkey=CDS;gene=hns;product=histone-like protein;protein_id=CAC29575.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	89114	89118	.	-	.	ID=id-AL450380.1:89114..89118;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	89620	90336	.	-	.	ID=gene-ML0068;Name=ML0068;gbkey=Gene;gene=ML0068;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	89620	90336	.	-	0	ID=cds-CAC29576.1;Parent=gene-ML0068;Dbxref=UniProtKB/TrEMBL:Q9CDD0,NCBI_GP:CAC29576.1;Name=CAC29576.1;Note=Similar to M. tuberculosis Rv3850%2C hypothetical protein%2C TR:P96227 (EMBL:AL123456) (218 aa)%3B Fasta score E(): 0%2C 78.3%25 identity in 217 aa overlap.;gbkey=CDS;gene=ML0068;product=conserved hypothetical protein;protein_id=CAC29576.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	90347	90351	.	-	.	ID=id-AL450380.1:90347..90351;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	90521	90919	.	-	.	ID=gene-ML0069;Name=ML0069;gbkey=Gene;gene=ML0069;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	90521	90919	.	-	0	ID=cds-CAC29577.1;Parent=gene-ML0069;Dbxref=GOA:Q9CDC9,InterPro:IPR001387,InterPro:IPR010982,UniProtKB/TrEMBL:Q9CDC9,NCBI_GP:CAC29577.1;Name=CAC29577.1;Note=Similar to M. tuberculosis Rv3849%2C hypothetical protein%2C TR:P96228 (EMBL:AL123456) (132 aa)%3B Fasta score E(): 0%2C 84.0%25 identity in 131 aa overlap.;gbkey=CDS;gene=ML0069;product=conserved hypothetical protein;protein_id=CAC29577.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	90927	90932	.	-	.	ID=id-AL450380.1:90927..90932;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	91296	91559	.	-	.	ID=gene-ML0070;Name=ML0070;gbkey=Gene;gene=ML0070;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	91296	91559	.	-	0	ID=cds-CAC29578.1;Parent=gene-ML0070;Dbxref=UniProtKB/TrEMBL:Q9CDC8,NCBI_GP:CAC29578.1;Name=CAC29578.1;Note=Unknown function.;gbkey=CDS;gene=ML0070;product=hypothetical protein;protein_id=CAC29578.1;transl_table=11
AL450380.1	EMBL	gene	91913	92446	.	-	.	ID=gene-ML0071;Name=ML0071;gbkey=Gene;gene=ML0071;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	91913	92446	.	-	0	ID=cds-CAC29579.1;Parent=gene-ML0071;Dbxref=UniProtKB/TrEMBL:Q9CDC7,NCBI_GP:CAC29579.1;Name=CAC29579.1;Note=Similar to M. tuberculosis Rv3847%2C hypothetical protein%2C TR:P96230 (EMBL:AL123456) (177 aa)%3B Fasta score E(): 0%2C 96.6%25 identity in 177 aa overlap.;gbkey=CDS;gene=ML0071;product=conserved hypothetical protein;protein_id=CAC29579.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	92452	92456	.	-	.	ID=id-AL450380.1:92452..92456;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	92647	93270	.	-	.	ID=gene-sodA;Name=sodA;gbkey=Gene;gene=sodA;gene_biotype=protein_coding;gene_synonym=ML0072
AL450380.1	EMBL	CDS	92647	93270	.	-	0	ID=cds-CAC29580.1;Parent=gene-sodA;Dbxref=GOA:P13367,InterPro:IPR001189,InterPro:IPR019831,InterPro:IPR019832,InterPro:IPR019833,NCBI_GP:CAC29580.1;Name=CAC29580.1;Note=Similar to M. tuberculosis Rv3846%2C sodA%2C superoxide dismutase%2C SW:SODF_MYCTU (P17670) (207 aa)%3B Fasta score E(): 0%2C 80.1%25 identity in 206 aa overlap%2C and to many other mycobacterial superoxide dismutases. Previously sequenced as SW:SODM_MYCLE (P13367) (206 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 206 aa overlap. Contains Pfam match to entry PF00081 sodfe%2C Iron/manganese superoxide dismutases (SODM). Contains PS00088 Manganese and iron superoxide dismutases signature.;gbkey=CDS;gene=sodA;product=superoxide dismutase;protein_id=CAC29580.1;transl_table=11
AL450380.1	EMBL	sequence_feature	92674	93264	.	-	.	ID=id-sodA;Note=Pfam match to entry PF00081 sodfe%2C Iron/manganese superoxide dismutases (SODM)%2C score 427.70%2C E-value 1e-124;gbkey=misc_feature;gene=sodA
AL450380.1	EMBL	sequence_feature	92770	92793	.	-	.	ID=id-sodA-2;Note=PS00088 Manganese and iron superoxide dismutases signature;gbkey=misc_feature;gene=sodA
AL450380.1	EMBL	ribosome_entry_site	93277	93285	.	-	.	ID=id-AL450380.1:93277..93285;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	94092	95126	.	+	.	ID=gene-ML0073;Name=ML0073;gbkey=Gene;gene=ML0073;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	94092	95126	.	+	0	ID=cds-CAC29581.1;Parent=gene-ML0073;Dbxref=InterPro:IPR025565,UniProtKB/TrEMBL:Q9CDC6,NCBI_GP:CAC29581.1;Name=CAC29581.1;Note=Similar to M. tuberculosis Rv3843c%2C putative membrane protein%2C TR:P96235 (EMBL:Z83864) (342 aa)%3B Fasta score E(): 0%2C 63.0%25 identity in 349 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0073;product=putative membrane protein;protein_id=CAC29581.1;transl_table=11
AL450380.1	EMBL	gene	95132	95947	.	+	.	ID=gene-glpQ;Name=glpQ;gbkey=Gene;gene=glpQ;gene_biotype=protein_coding;gene_synonym=ML0074
AL450380.1	EMBL	CDS	95132	95947	.	+	0	ID=cds-CAC29582.1;Parent=gene-glpQ;Dbxref=GOA:Q9CDC5,InterPro:IPR004129,InterPro:IPR017946,UniProtKB/TrEMBL:Q9CDC5,NCBI_GP:CAC29582.1;Name=CAC29582.1;Note=Similar to M. tuberculosis Rv3842c%2C glpQ1%2C glycerophosphoryl diester phosphodiesterase%2C TR:P96236 (EMBL:AL123456) (274 aa)%3B Fasta score E(): 0%2C 88.8%25 identity in 269 aa overlap. Similar to Bacillus subtilis glpQ%2C glycerophosphoryl diester phosphodiesterase%2C SW:GLPQ_BACSU (P37965) (293 aa)%3B Fasta score E(): 2.3e-20%2C 32.0%25 identity in 250 aa overlap.;gbkey=CDS;gene=glpQ;product=putative glycerophosphoryl diester phosphodiesterase;protein_id=CAC29582.1;transl_table=11
AL450380.1	EMBL	pseudogene	95965	96439	.	-	.	ID=gene-bfrB;Name=bfrB;gbkey=Gene;gene=bfrB;gene_biotype=pseudogene;gene_synonym=ML0075;pseudo=true
AL450380.1	EMBL	CDS	95965	96439	.	-	0	ID=cds-bfrB;Parent=gene-bfrB;Note=Possible pseudogene of M. tuberculosis orthologue bfrB (Best blastx score 190);gbkey=CDS;gene=bfrB;product=bacterioferritin (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	97037	97282	.	-	.	ID=gene-ML0076;Name=ML0076;gbkey=Gene;gene=ML0076;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	97037	97282	.	-	0	ID=cds-ML0076;Parent=gene-ML0076;Note=Possible pseudogene of M. tuberculosis orthologue Rv3840 (Best blastx score 196);gbkey=CDS;gene=ML0076;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	97832	98119	.	-	.	ID=gene-ML0077;Name=ML0077;gbkey=Gene;gene=ML0077;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	97832	98119	.	-	0	ID=cds-ML0077;Parent=gene-ML0077;Note=Possible pseudogene of M. tuberculosis orthologue Rv3839 (Best blastx score 251);gbkey=CDS;gene=ML0077;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	98425	99393	.	+	.	ID=gene-pheA;Name=pheA;gbkey=Gene;gene=pheA;gene_biotype=protein_coding;gene_synonym=ML0078
AL450380.1	EMBL	CDS	98425	99393	.	+	0	ID=cds-CAC29586.1;Parent=gene-pheA;Dbxref=GOA:Q9CDC4,InterPro:IPR001086,InterPro:IPR002912,InterPro:IPR018528,NCBI_GP:CAC29586.1;Name=CAC29586.1;Note=Similar to M. tuberculosis Rv3838c%2C pheA%2C prephenate dehydratase%2C TR:P96240 (EMBL:AL123456) (321 aa)%3B Fasta score E(): 0%2C 83.9%25 identity in 311 aa overlap. Similar to Amycolatopsis methanolica pheA%2C prephenate dehydratase%2C SW:PHEA_AMYME (Q44104) (304 aa)%3B Fasta score E(): 0%2C 44.4%25 identity in 315 aa overlap. Contains Pfam match to entry PF01842 ACT%2C ACT domain. Contains Pfam match to entry PF00800 PDT%2C Prephenate dehydratase. Contains PS00858 Prephenate dehydratase signature 2.;gbkey=CDS;gene=pheA;product=putative prephenate dehydratase;protein_id=CAC29586.1;transl_table=11
AL450380.1	EMBL	sequence_feature	98440	99006	.	+	.	ID=id-pheA;Note=Pfam match to entry PF00800 PDT%2C Prephenate dehydratase%2C score 313.20%2C E-value 3e-90;gbkey=misc_feature;gene=pheA
AL450380.1	EMBL	sequence_feature	99034	99267	.	+	.	ID=id-pheA-2;Note=Pfam match to entry PF01842 ACT%2C ACT domain%2C score 55.20%2C E-value 1.4e-12;gbkey=misc_feature;gene=pheA
AL450380.1	EMBL	sequence_feature	99115	99138	.	+	.	ID=id-pheA-3;Note=PS00858 Prephenate dehydratase signature 2;gbkey=misc_feature;gene=pheA
AL450380.1	EMBL	gene	99390	100085	.	+	.	ID=gene-ML0079;Name=ML0079;gbkey=Gene;gene=ML0079;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	99390	100085	.	+	0	ID=cds-CAC29587.1;Parent=gene-ML0079;Dbxref=InterPro:IPR013078,InterPro:IPR029033,UniProtKB/TrEMBL:Q9CDC3,NCBI_GP:CAC29587.1;Name=CAC29587.1;Note=Similar to M. tuberculosis Rv3837c%2C putative phosphoglycerate mutase%2C TR:P96241 (EMBL:AL123456) (232 aa)%3B Fasta score E(): 0%2C 71.6%25 identity in 232 aa overlap. Similar to Amycolatopsis methanolica pgm%2C 2%2C3-PDG dependent phosphoglycerate mutase%2C TR:Q9ZAX0 (EMBL:U73808) (205 aa)%3B Fasta score E(): 9.3e-24%2C 39.7%25 identity in 204 aa overlap. Contains Pfam match to entry PF00300 PGAM%2C Phosphoglycerate mutase family. Contains PS00175 Phosphoglycerate mutase family phosphohistidine signature.%3B~Similar to ML1452;gbkey=CDS;gene=ML0079;product=putative phosphoglycerate mutase;protein_id=CAC29587.1;transl_table=11
AL450380.1	EMBL	sequence_feature	99405	99869	.	+	.	ID=id-ML0079;Note=Pfam match to entry PF00300 PGAM%2C Phosphoglycerate mutase family%2C score 27.40%2C E-value 2e-06;gbkey=misc_feature;gene=ML0079
AL450380.1	EMBL	sequence_feature	99408	99437	.	+	.	ID=id-ML0079-2;Note=PS00175 Phosphoglycerate mutase family phosphohistidine signature;gbkey=misc_feature;gene=ML0079
AL450380.1	EMBL	pseudogene	100374	100651	.	-	.	ID=gene-ML0080;Name=ML0080;gbkey=Gene;gene=ML0080;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	100374	100651	.	-	0	ID=cds-ML0080;Parent=gene-ML0080;Note=Possible pseudogene of M. tuberculosis orthologue Rv3836 (Best blastx score 137);gbkey=CDS;gene=ML0080;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	100648	102000	.	-	.	ID=gene-ML0081;Name=ML0081;gbkey=Gene;gene=ML0081;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	100648	102000	.	-	0	ID=cds-CAC29589.1;Parent=gene-ML0081;Dbxref=InterPro:IPR026004,UniProtKB/TrEMBL:Q9CDC2,NCBI_GP:CAC29589.1;Name=CAC29589.1;Note=Similar to M. tuberculosis Rv3835c%2C hypothetical protein%2C TR:P96243 (EMBL:AL123456) (449 aa)%3B Fasta score E(): 0%2C 69.4%25 identity in 457 aa overlap. Contains hydrophobic%2C possible membrane-spanning region near the N-terminus.;gbkey=CDS;gene=ML0081;product=putative membrane protein;protein_id=CAC29589.1;transl_table=11
AL450380.1	EMBL	gene	102122	103375	.	+	.	ID=gene-serS;Name=serS;gbkey=Gene;gene=serS;gene_biotype=protein_coding;gene_synonym=ML0082
AL450380.1	EMBL	CDS	102122	103375	.	+	0	ID=cds-CAC29590.1;Parent=gene-serS;Dbxref=GOA:Q9CDC1,InterPro:IPR002314,InterPro:IPR002317,InterPro:IPR006195,InterPro:IPR010978,InterPro:IPR015866,NCBI_GP:CAC29590.1;Name=CAC29590.1;Note=Similar to M. tuberculosis Rv3834c%2C serS%2C seryl-tRNA synthetase%2C SW:SYS_MYCTU (P96244) (419 aa)%3B Fasta score E(): 0%2C 85.8%25 identity in 416 aa overlap. Similar to Staphylococcus aureus serS%2C seryl-tRNA synthetase%2C SW:SYS_STAAU (Y09924) (428 aa)%3B Fasta score E(): 0%2C 36.8%25 identity in 418 aa overlap. Contains Pfam match to entry PF00587 tRNA-synt_2b%2C tRNA synthetase class II (G%2C H%2C P%2C S and T). Contains PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.;gbkey=CDS;gene=serS;product=putative seryl-tRNA synthase;protein_id=CAC29590.1;transl_table=11
AL450380.1	EMBL	sequence_feature	102338	103348	.	+	.	ID=id-serS;Note=Pfam match to entry PF00587 tRNA-synt_2b%2C tRNA synthetase class II (G%2C H%2C P%2C S and T)%2C score 132.30%2C E-value 8.8e-36;gbkey=misc_feature;gene=serS
AL450380.1	EMBL	sequence_feature	102881	102955	.	+	.	ID=id-serS-2;Note=PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1;gbkey=misc_feature;gene=serS
AL450380.1	EMBL	pseudogene	105732	106191	.	-	.	ID=gene-ML0083;Name=ML0083;gbkey=Gene;gene=ML0083;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	105732	106191	.	-	0	ID=cds-ML0083;Parent=gene-ML0083;Note=Possible pseudogene of M. tuberculosis orthologue Rv3831 (Best blastx score 151);gbkey=CDS;gene=ML0083;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	106286	106599	.	-	.	ID=gene-ML0084;Name=ML0084;gbkey=Gene;gene=ML0084;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	106286	106599	.	-	0	ID=cds-ML0084;Parent=gene-ML0084;Note=Possible pseudogene of M. tuberculosis orthologue Rv3819 (Best blastx score 138);gbkey=CDS;gene=ML0084;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	106635	108159	.	-	.	ID=gene-ML0085;Name=ML0085;gbkey=Gene;gene=ML0085;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	106635	108159	.	-	0	ID=cds-ML0085;Parent=gene-ML0085;Note=Possible pseudogene of M. tuberculosis orthologue Rv3818 (Best blastx score 275);gbkey=CDS;gene=ML0085;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	108258	108991	.	-	.	ID=gene-ML0086;Name=ML0086;gbkey=Gene;gene=ML0086;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	108258	108991	.	-	0	ID=cds-ML0086;Parent=gene-ML0086;Note=Possible pseudogene of M. tuberculosis orthologue Rv3817 (Best blastx score 203);gbkey=CDS;gene=ML0086;product=probable aminoglycoside 3'-phosphotransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	109049	109822	.	+	.	ID=gene-ML0087;Name=ML0087;gbkey=Gene;gene=ML0087;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	109049	109822	.	+	0	ID=cds-CAC29595.1;Parent=gene-ML0087;Dbxref=GOA:Q9CDC0,InterPro:IPR002123,UniProtKB/TrEMBL:Q9CDC0,NCBI_GP:CAC29595.1;Name=CAC29595.1;Note=Similar to M. tuberculosis Rv3816c%2C probable acyltransferase%2C TR:O07807 (EMBL:AL123456) (259 aa)%3B Fasta score E(): 0%2C 81.5%25 identity in 254 aa overlap. Also similar to the neighbouring putative acyltransferases in M. tuberculosis%2C Rv3815c and Rv3814c. Shows similarity to many putative bacterial acyltransferases. Contains Pfam match to entry PF01553 Acyltransferase%2C Acyltransferase.%3B~Similar to ML0892;gbkey=CDS;gene=ML0087;product=putative acyltransferase;protein_id=CAC29595.1;transl_table=11
AL450380.1	EMBL	sequence_feature	109136	109678	.	+	.	ID=id-ML0087;Note=Pfam match to entry PF01553 Acyltransferase%2C Acyltransferase%2C score 170.90%2C E-value 2.1e-47;gbkey=misc_feature;gene=ML0087
AL450380.1	EMBL	pseudogene	109842	110234	.	+	.	ID=gene-ML0088;Name=ML0088;gbkey=Gene;gene=ML0088;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	109842	110234	.	+	0	ID=cds-ML0088;Parent=gene-ML0088;Note=Possible pseudogene of M. tuberculosis orthologue Rv3815c (Best blastx score 228);gbkey=CDS;gene=ML0088;product=probable acyltransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	110329	111174	.	+	.	ID=gene-ML0089;Name=ML0089;gbkey=Gene;gene=ML0089;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	110329	111174	.	+	0	ID=cds-CAC29597.1;Parent=gene-ML0089;Dbxref=GOA:Q9CDB9,InterPro:IPR000150,InterPro:IPR006379,InterPro:IPR023214,UniProtKB/TrEMBL:Q9CDB9,NCBI_GP:CAC29597.1;Name=CAC29597.1;Note=Similar to M. tuberculosis Rv3813c%2C conserved hypothetical protein%2C TR:O07810 (EMBL:AL123456) (273 aa)%3B Fasta score E(): 0%2C 80.4%25 identity in 271 aa overlap. Similar to many other bacterial hypothetical proteins. Contains Pfam match to entry PF00592 DUF3%2C Cof family.;gbkey=CDS;gene=ML0089;product=conserved hypothetical protein;protein_id=CAC29597.1;transl_table=11
AL450380.1	EMBL	sequence_feature	110401	111135	.	+	.	ID=id-ML0089;Note=Pfam match to entry PF00592 DUF3%2C Cof family%2C score 91.10%2C E-value 2.2e-23;gbkey=misc_feature;gene=ML0089
AL450380.1	EMBL	pseudogene	111660	112884	.	-	.	ID=gene-csp;Name=csp;gbkey=Gene;gene=csp;gene_biotype=pseudogene;gene_synonym=ML0090;pseudo=true
AL450380.1	EMBL	CDS	111660	112884	.	-	0	ID=cds-csp;Parent=gene-csp;Note=Possible pseudogene of M. tuberculosis orthologue csp (Best blastx score 228);gbkey=CDS;gene=csp;product=secreted protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	113153	113863	.	-	.	ID=gene-ML0091;Name=ML0091;gbkey=Gene;gene=ML0091;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	113153	113863	.	-	0	ID=cds-CAC29599.1;Parent=gene-ML0091;Dbxref=NCBI_GP:CAC29599.1;Name=CAC29599.1;Note=Similar to M. tuberculosis Rv3810%2C erp%2C pirG%2C exported repetitive protein precursor%2C SW:ERP_MYCTU (Q50793) (284 aa)%3B Fasta score E(): 1.8e-23%2C 52.7%25 identity in 281 aa overlap. Previously sequenced as SW:28KD_MYCLE (P19361) (236 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 236 aa overlap. Contains a probable N-terminal signal sequence.;gbkey=CDS;gene=ML0091;product=28 KDa antigen precursor;protein_id=CAC29599.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	113870	113874	.	-	.	ID=id-AL450380.1:113870..113874;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	114130	115371	.	+	.	ID=gene-glf;Name=glf;gbkey=Gene;gene=glf;gene_biotype=protein_coding;gene_synonym=ML0092
AL450380.1	EMBL	CDS	114130	115371	.	+	0	ID=cds-CAC29600.1;Parent=gene-glf;Dbxref=GOA:Q9CDB8,InterPro:IPR004379,InterPro:IPR015899,InterPro:IPR016040,UniProtKB/TrEMBL:Q9CDB8,NCBI_GP:CAC29600.1;Name=CAC29600.1;Note=Similar to M. tuberculosis Rv3809c%2C glf%2C UDP-galactopyranose mutase%2C TR:O06934 (EMBL:U96128) (399 aa)%3B Fasta score E(): 0%2C 86.6%25 identity in 396 aa overlap. Similar to e.g. Escherichia coli glf%2C UDP-galactopyranose mutase%2C SW:GLF_ECOLI (P37747) (367 aa)%3B Fasta score E(): 0%2C 43.1%25 identity in 378 aa overlap.;gbkey=CDS;gene=glf;product=putative UDP-galactopyranose mutase;protein_id=CAC29600.1;transl_table=11
AL450380.1	EMBL	gene	115371	117302	.	+	.	ID=gene-ML0093;Name=ML0093;gbkey=Gene;gene=ML0093;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	115371	117302	.	+	0	ID=cds-CAC29601.1;Parent=gene-ML0093;Dbxref=InterPro:IPR029044,UniProtKB/TrEMBL:Q9CDB7,NCBI_GP:CAC29601.1;Name=CAC29601.1;Note=Similar to M. tuberculosis Rv3808c%2C hypothetical protein%2C TR:O53585 (EMBL:AL123456) (637 aa)%3B Fasta score E(): 0%2C 85.4%25 identity in 643 aa overlap.;gbkey=CDS;gene=ML0093;product=conserved hypothetical protein;protein_id=CAC29601.1;transl_table=11
AL450380.1	EMBL	gene	117295	117873	.	+	.	ID=gene-ML0094;Name=ML0094;gbkey=Gene;gene=ML0094;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	117295	117873	.	+	0	ID=cds-CAC29602.1;Parent=gene-ML0094;Dbxref=GOA:Q9CDB6,InterPro:IPR000326,UniProtKB/TrEMBL:Q9CDB6,NCBI_GP:CAC29602.1;Name=CAC29602.1;Note=Similar to M. tuberculosis Rv3807c%2C possible membrane protein%2C TR:O53584 (EMBL:AL123456) (165 aa)%3B Fasta score E(): 0%2C 72.8%25 identity in 151 aa overlap and to Streptomyces coelicolor SC5G8.11%2C putative integral membrane protein%2C TR:CAB89062 (EMBL:AL353872) (169 aa)%3B Fasta score E(): 1.7e-15%2C 45.1%25 identity in 153 aa overlap. Contains hydrophobic%2C possible membrane-spanning region. Contains Pfam match to entry PF01569 PAP2%2C PAP2 superfamily.;gbkey=CDS;gene=ML0094;product=putative membrane protein;protein_id=CAC29602.1;transl_table=11
AL450380.1	EMBL	sequence_feature	117409	117825	.	+	.	ID=id-ML0094;Note=Pfam match to entry PF01569 PAP2%2C PAP2 superfamily%2C score 97.10%2C E-value 3.4e-25;gbkey=misc_feature;gene=ML0094
AL450380.1	EMBL	gene	117870	118778	.	+	.	ID=gene-ML0095;Name=ML0095;gbkey=Gene;gene=ML0095;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	117870	118778	.	+	0	ID=cds-CAC29603.1;Parent=gene-ML0095;Dbxref=GOA:Q9CDB5,InterPro:IPR000537,UniProtKB/TrEMBL:Q9CDB5,NCBI_GP:CAC29603.1;Name=CAC29603.1;Note=Similar to M. tuberculosis Rv3806c%2C possible integral membrane protein%2C TR:O53583 (EMBL:AL123456) (302 aa)%3B Fasta score E(): 0%2C 83.8%25 identity in 302 aa overlap and to bacterial putative membrane proteins e.g. Streptomyces coelicolor SC5G8.12%2C putative integral membrane protein%2C TR:CAB89063 (EMBL:AL353872) (322 aa)%3B Fasta score E(): 0%2C 48.6%25 identity in 290 aa overlap and Azorhizobium caulinodans noeC%2C possible integral membrane protein found near nod locus%2C SW:NOEC_AZOCA (Q43967) (307 aa)%3B Fasta score E(): 1.1e-12%2C 31.4%25 identity in 191 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0095;product=putative integral membrane protein;protein_id=CAC29603.1;transl_table=11
AL450380.1	EMBL	gene	118819	120768	.	+	.	ID=gene-ML0096;Name=ML0096;gbkey=Gene;gene=ML0096;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	118819	120768	.	+	0	ID=cds-CAC29604.1;Parent=gene-ML0096;Dbxref=UniProtKB/TrEMBL:Q9CDB4,NCBI_GP:CAC29604.1;Name=CAC29604.1;Note=similar to M. tuberculosis Rv3805c%2C possible membrane protein%2C TR:O53582 (EMBL:AL123456) (627 aa)%3B Fasta score E(): 0%2C 80.9%25 identity in 629 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0096;product=putative membrane protein;protein_id=CAC29604.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	121138	121145	.	+	.	ID=id-AL450380.1:121138..121145;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	121157	122149	.	+	.	ID=gene-fbpA;Name=fbpA;gbkey=Gene;gene=fbpA;gene_biotype=protein_coding;gene_synonym=ML0097
AL450380.1	EMBL	CDS	121157	122149	.	+	0	ID=cds-CAC29605.1;Parent=gene-fbpA;Dbxref=GOA:Q05861,InterPro:IPR000801,InterPro:IPR029058,NCBI_GP:CAC29605.1;Name=CAC29605.1;Note=Similar to mycobacterial fbpA%2C antigen 85-A precursors e.g. M. tuberculosis fbpA%2C antigen 85-A precursor%2C SW:A85A_MYCTU (P17944) (338 aa)%3B Fasta score E(): 0%2C 83.0%25 identity in 329 aa overlap. Also similar to the B- and C- proteins of the mycobacterial antigen 85 complexes. Similar to N-terminal region of Corynebacterium glutamicum csp1%2C PS1 protein precursor%2C SW:CSP1_CORGL (Q01377) (657 aa)%3B Fasta score E(): 5.2e-31%2C 38.6%25 identity in 290 aa overlap. Previously sequenced as SW:A85A_MYCLE (Q05861) (330 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 330 aa overlap. Contains probable N-terminal signal sequence. Contains Pfam match to entry PF00756 Esterase%2C Putative esterase.%3B~Similar to ML0098%2C ML2028 and ML2655;gbkey=CDS;gene=fbpA;product=antigen 85A%2C mycolytransferase;protein_id=CAC29605.1;transl_table=11
AL450380.1	EMBL	sequence_feature	121241	121903	.	+	.	ID=id-fbpA;Note=Pfam match to entry PF00756 Esterase%2C Putative esterase%2C score 381.30%2C E-value 9.7e-111;gbkey=misc_feature;gene=fbpA
AL450380.1	EMBL	ribosome_entry_site	122299	122304	.	+	.	ID=id-AL450380.1:122299..122304;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	122310	123215	.	+	.	ID=gene-fbpC;Name=fbpC;gbkey=Gene;gene=fbpC;gene_biotype=protein_coding;gene_synonym=ML0098
AL450380.1	EMBL	CDS	122310	123215	.	+	0	ID=cds-CAC29606.1;Parent=gene-fbpC;Dbxref=GOA:Q05868,InterPro:IPR000801,InterPro:IPR029058,NCBI_GP:CAC29606.1;Name=CAC29606.1;Note=Similar to mycobacterial fbpC%2C antigen 85-C precursors e.g. M. tuberculosis fbpC%2C antigen 85-C precursor%2C SW:A85C_MYCTU (P17944) (340 aa)%3B Fasta score E(): 0%2C 40.7%25 identity in 305 aa overlap. Also similar to the B- and C- proteins of the mycobacterial antigen 85 complexes. Similar to N-terminal region of Corynebacterium glutamicum csp1%2C PS1 protein precursor%2C SW:CSP1_CORGL (Q01377) (657 aa)%3B Fasta score E(): 1.4e-14%2C 31.5%25 identity in 248 aa overlap. Previously sequenced as MPB51 precursor%2C TR:Q48923 (EMBL:D26486) (299 aa)%3B Fasta score E(): 0%2C 77.5%25 identity in 302 aa overlap. Contains probable N-terminal signal sequence. Contains Pfam match to entry PF00756 Esterase%2C Putative esterase.%3B~Similar to ML0097%2C ML2028 and ML2655;gbkey=CDS;gene=fbpC;product=antigen 85C%2C mycolyltransferase;protein_id=CAC29606.1;transl_table=11
AL450380.1	EMBL	sequence_feature	122382	122996	.	+	.	ID=id-fbpC;Note=Pfam match to entry PF00756 Esterase%2C Putative esterase%2C score 305.30%2C E-value 7.3e-88;gbkey=misc_feature;gene=fbpC
AL450380.1	EMBL	ribosome_entry_site	123358	123363	.	+	.	ID=id-AL450380.1:123358..123363;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	123370	124380	.	+	.	ID=gene-ML0099;Name=ML0099;gbkey=Gene;gene=ML0099;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	123370	124380	.	+	0	ID=cds-CAC29607.1;Parent=gene-ML0099;Dbxref=GOA:Q9CDB3,InterPro:IPR000675,InterPro:IPR029058,UniProtKB/TrEMBL:Q9CDB3,NCBI_GP:CAC29607.1;Name=CAC29607.1;Note=Similar to M. tuberculosis Rv3802c%2C hypothetical protein%2C TR:O53581 (EMBL:AL123456) (336 aa)%3B Fasta score E(): 0%2C 75.5%25 identity in 335 aa overlap.;gbkey=CDS;gene=ML0099;product=conserved hypothetical protein;protein_id=CAC29607.1;transl_table=11
AL450380.1	EMBL	gene	124599	126506	.	+	.	ID=gene-fadD32;Name=fadD32;gbkey=Gene;gene=fadD32;gene_biotype=protein_coding;gene_synonym=ML0100
AL450380.1	EMBL	CDS	124599	126506	.	+	0	ID=cds-CAC29608.1;Parent=gene-fadD32;Dbxref=GOA:Q9CDB2,InterPro:IPR000873,UniProtKB/TrEMBL:Q9CDB2,NCBI_GP:CAC29608.1;Name=CAC29608.1;Note=Similar to several putative acyl-CoA synthases from M. tuberculosis e.g. M. tuberculosis Rv3801c%2C fadD32%2C putative acyl-CoA synthase%2C TR:O53580 (EMBL:AL123456) (637 aa)%3B Fasta score E(): 0%2C 93.2%25 identity in 632 aa overlap. Similar to Mycobacterium bovis BCG ORF3%2C acyl-CoA synthase%2C TR:P71495 (EMBL:U75685) (582 aa)%3B Fasta score E(): 0%2C 36.8%25 identity in 581 aa overlap and to domains of polyketide synthases e.g. Myxococcus xanthus safB%2C saframycin Mx1 synthetase B%2C TR:Q50857 (EMBL:U24657) (1770 aa)%3B Fasta score E(): 0%2C 36.4%25 identity in 605 aa overlap. Contains Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme.%3B~Similar to ML0132%2C ML0138%2C ML1234 and ML2358;gbkey=CDS;gene=fadD32;product=putative acyl-CoA synthetase;protein_id=CAC29608.1;transl_table=11
AL450380.1	EMBL	sequence_feature	124803	126158	.	+	.	ID=id-fadD32;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score -85.00%2C E-value 1.1e-10;gbkey=misc_feature;gene=fadD32
AL450380.1	EMBL	gene	126518	131872	.	+	.	ID=gene-pks13;Name=pks13;gbkey=Gene;gene=pks13;gene_biotype=protein_coding;gene_synonym=ML0101
AL450380.1	EMBL	CDS	126518	131872	.	+	0	ID=cds-CAC29609.1;Parent=gene-pks13;Dbxref=GOA:Q9CDB1,InterPro:IPR001031,InterPro:IPR001227,InterPro:IPR009081,InterPro:IPR014030,InterPro:IPR014031,InterPro:IPR014043,InterPro:IPR016035,InterPro:IPR016036,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR018201,InterPro:IPR020801,InterPro:IPR020806,InterPro:IPR029058,UniProtKB/TrEMBL:Q9CDB1,NCBI_GP:CAC29609.1;Name=CAC29609.1;Note=Similar to many polyketide synthases from M. tuberculosis e.g. ppsA%2C M. tuberculosis phenolpthiocerol synthesis polyketide synthase%2C SW:PPSA_MYCTU (Q10977) (1876 aa)%3B Fasta score E(): 0%2C 36.1%25 identity in 1277 aa overlap. Similar to many others e.g. Streptomyces noursei nysI%2C nystatin biosynthesis polyketide synthase%2C TR:AAF71766 (EMBL:AF263912) (9477 aa)%3B Fasta score E(): 0%2C 33.4%25 identity in 1215 aa overlap. Contains Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase. Contains Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain. Contains Pfam match to entry PF00975 Thioesterase%2C Thioesterase domain. Contains 2 Pfam matches to entry PF00550 pp-binding%2C Phosphopantetheine attachment site. Contains PS00606 Beta-ketoacyl synthases active site.%3B~Similar to ML0135%2C ML0139%2C ML1229%2C ML2353%2C ML2354%2C ML2355%2C ML2356%2C ML2357%2C and ML2607;gbkey=CDS;gene=pks13;product=polyketide synthase;protein_id=CAC29609.1;transl_table=11
AL450380.1	EMBL	sequence_feature	126689	126889	.	+	.	ID=id-pks13;Note=Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site%2C score 55.80%2C E-value 8.4e-14;gbkey=misc_feature;gene=pks13
AL450380.1	EMBL	sequence_feature	126971	128248	.	+	.	ID=id-pks13-2;Note=Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase%2C score 596.90%2C E-value 1.3e-175;gbkey=misc_feature;gene=pks13
AL450380.1	EMBL	sequence_feature	127448	127498	.	+	.	ID=id-pks13-3;Note=PS00606 Beta-ketoacyl synthases active site;gbkey=misc_feature;gene=pks13
AL450380.1	EMBL	sequence_feature	128747	129730	.	+	.	ID=id-pks13-4;Note=Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain%2C score 213.30%2C E-value 3.7e-60;gbkey=misc_feature;gene=pks13
AL450380.1	EMBL	sequence_feature	130316	130456	.	+	.	ID=id-pks13-5;Note=Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site%2C score 23.60%2C E-value 6.6e-05;gbkey=misc_feature;gene=pks13
AL450380.1	EMBL	sequence_feature	131084	131836	.	+	.	ID=id-pks13-6;Note=Pfam match to entry PF00975 Thioesterase%2C Thioesterase domain%2C score 40.90%2C E-value 2.8e-08;gbkey=misc_feature;gene=pks13
AL450380.1	EMBL	repeat_region	126536	126556	.	+	.	ID=id-pks13-7;Note=21 bp direct repeat%2C CCCCAATTGAACCAGGACCCT;gbkey=repeat_region;gene=pks13
AL450380.1	EMBL	repeat_region	126557	126577	.	+	.	ID=id-pks13-8;Note=21 bp direct repeat%2C CCCCAATTGAACCAGGACCCT;gbkey=repeat_region;gene=pks13
AL450380.1	EMBL	repeat_region	128108	128677	.	+	.	ID=id-pks13-9;Note=570 bp repeat%2C 100%25 identitical to region 3112112..3112681%2C occupied by pseudogene ML2067;gbkey=repeat_region;gene=pks13
AL450380.1	EMBL	gene	131869	133422	.	+	.	ID=gene-accD4;Name=accD4;gbkey=Gene;gene=accD4;gene_biotype=protein_coding;gene_synonym=ML0102
AL450380.1	EMBL	CDS	131869	133422	.	+	0	ID=cds-CAC29610.1;Parent=gene-accD4;Dbxref=GOA:Q9CDB0,InterPro:IPR000022,InterPro:IPR011762,InterPro:IPR011763,InterPro:IPR029045,UniProtKB/TrEMBL:Q9CDB0,NCBI_GP:CAC29610.1;Name=CAC29610.1;Note=Similar to many acyl-CoA carboxylase subunits e.g. M. tuberculosis pccB%2C acetyl/propionyl-CoA carboxylase [beta] subunit%2C TR:O53578 (EMBL:AL123456) (518 aa)%3B Fasta score E(): 0%2C 91.2%25 identity in 512 aa overlap and Streptomyces coelicolor pccB%2C propionyl-CoA carboxylase complex B subunit%2C TR:Q9X4K7 (EMBL:AF113605) (530 aa)%3B Fasta score E(): 0%2C 48.2%25 identity in 521 aa overlap. Contains Pfam match to entry PF01039 Carboxyl_trans%2C Carboxyl transferase domain.%3B~Similar to ML0731 and ML1657;gbkey=CDS;gene=accD4;product=putative acyl CoA carboxylase [beta] subunit;protein_id=CAC29610.1;transl_table=11
AL450380.1	EMBL	sequence_feature	131914	133419	.	+	.	ID=id-accD4;Note=Pfam match to entry PF01039 Carboxyl_trans%2C Carboxyl transferase domain%2C score 544.70%2C E-value 6.3e-160;gbkey=misc_feature;gene=accD4
AL450380.1	EMBL	pseudogene	133849	135036	.	-	.	ID=gene-fadE35;Name=fadE35;gbkey=Gene;gene=fadE35;gene_biotype=pseudogene;gene_synonym=ML0103;pseudo=true
AL450380.1	EMBL	CDS	133849	135036	.	-	0	ID=cds-fadE35;Parent=gene-fadE35;Note=Possible pseudogene of M. tuberculosis orthologue fadE35 (Best blastx score 159);gbkey=CDS;gene=fadE35;product=acyl-CoA dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	136573	139824	.	-	.	ID=gene-embB;Name=embB;gbkey=Gene;gene=embB;gene_biotype=protein_coding;gene_synonym=ML0104
AL450380.1	EMBL	CDS	136573	139824	.	-	0	ID=cds-CAC29612.1;Parent=gene-embB;Dbxref=GOA:Q9CDA9,InterPro:IPR007680,InterPro:IPR027451,NCBI_GP:CAC29612.1;Name=CAC29612.1;Note=Similar to M. tuberculosis embB%2C probable arabinosyl transferase%2C TR:P72030 (EMBL:AL123456) (1098 aa)%3B Fasta score E(): 0%2C 78.0%25 identity in 1101 aa overlap and to other putative mycobacterial arabinosyltransferases. Involved in resistance to ethambutol in M. tuberculosis. Contains hydrophobic%2C possible membrane-spanning regions.%3B~Similar to ML0105 and ML0106;gbkey=CDS;gene=embB;product=putative arabinosyl transferase;protein_id=CAC29612.1;transl_table=11
AL450380.1	EMBL	gene	139821	143156	.	-	.	ID=gene-embA;Name=embA;gbkey=Gene;gene=embA;gene_biotype=protein_coding;gene_synonym=ML0105
AL450380.1	EMBL	CDS	139821	143156	.	-	0	ID=cds-CAC29613.1;Parent=gene-embA;Dbxref=GOA:Q9CDA8,InterPro:IPR007680,InterPro:IPR027451,NCBI_GP:CAC29613.1;Name=CAC29613.1;Note=Similar to M. tuberculosis embA%2C probable arabinosyl transferase%2C TR:Q50394 (EMBL:AL123456) (1092 aa)%3B Fasta score E(): 0%2C 64.2%25 identity in 1108 aa overlap and to other putative mycobacterial arabinosyltransferases. Involved in resistance to ethambutol in M. tuberculosis. Contains hydrophobic%2C possible membrane-spanning regions.%3B~Similar to ML0104 and ML0106;gbkey=CDS;gene=embA;product=putative arabinosyl transferase;protein_id=CAC29613.1;transl_table=11
AL450380.1	EMBL	gene	144115	147327	.	-	.	ID=gene-embC;Name=embC;gbkey=Gene;gene=embC;gene_biotype=protein_coding;gene_synonym=ML0106
AL450380.1	EMBL	CDS	144115	147327	.	-	0	ID=cds-CAC29614.1;Parent=gene-embC;Dbxref=GOA:Q9CDA7,InterPro:IPR007680,InterPro:IPR027451,NCBI_GP:CAC29614.1;Name=CAC29614.1;Note=Similar to M. tuberculosis embC%2C probable arabinosyl transferase%2C TR:P72059 (EMBL:AL123456) (1094 aa)%3B Fasta score E(): 0%2C 82.8%25 identity in 1075 aa overlap and to other putative mycobacterial arabinosyltransferases. Involved in resistance to ethambutol in M. tuberculosis. Contains hydrophobic%2C possible membrane-spanning regions.%3B~Similar to ML0104 and ML0105;gbkey=CDS;gene=embC;product=putative arabinosyl transferase;protein_id=CAC29614.1;transl_table=11
AL450380.1	EMBL	gene	147460	149358	.	-	.	ID=gene-ML0107;Name=ML0107;gbkey=Gene;gene=ML0107;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	147460	149358	.	-	0	ID=cds-CAC29615.1;Parent=gene-ML0107;Dbxref=GOA:Q9CDA6,InterPro:IPR020959,InterPro:IPR020963,NCBI_GP:CAC29615.1;Name=CAC29615.1;Note=Similar to M. tuberculosis Rv3792%2C unknown membrane protein%2C TR:P72058 (EMBL:AL123456) (643 aa)%3B Fasta score E(): 0%2C 77.5%25 identity in 631 aa overlap and to the C-terminal half of Mycobacterium smegmatis ORF3%2C hypothetical membrane protein%2C TR:O05765 (EMBL:U46844) (603 aa)%3B Fasta score E(): 0%2C 67.8%25 identity in 267 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0107;product=putative membrane protein;protein_id=CAC29615.1;transl_table=11
AL450380.1	EMBL	gene	149361	150125	.	-	.	ID=gene-ML0108;Name=ML0108;gbkey=Gene;gene=ML0108;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	149361	150125	.	-	0	ID=cds-CAC29616.1;Parent=gene-ML0108;Dbxref=GOA:Q9CDA5,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:Q9CDA5,NCBI_GP:CAC29616.1;Name=CAC29616.1;Note=Similar To M. tuberculosis Rv3791%2C putative oxidoreductase%2C SW:Y1J1_MYCTU (P72057) (254 aa)%3B Fasta score E(): 0%2C 89.0%25 identity in 254 aa overlap and to other putative oxidoreductases from the same organism. Shows weaker similarity to Alcaligenes eutrophus phbB%2C acetoacetyl-CoA reductase%2C SW:PHBB_ALCEU (P14697) (246 aa)%3B Fasta score E(): 3e-09%2C 28.3%25 identity in 191 aa overlap. Contains Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase. Contains PS00061 Short-chain dehydrogenases/reductases family signature.%3B~Shows weak similarity to ML0429 and to the C-terminal half of ML2565;gbkey=CDS;gene=ML0108;product=putative oxidoreductase;protein_id=CAC29616.1;transl_table=11
AL450380.1	EMBL	sequence_feature	149538	150098	.	-	.	ID=id-ML0108;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 83.50%2C E-value 4.2e-21;gbkey=misc_feature;gene=ML0108
AL450380.1	EMBL	sequence_feature	149601	149687	.	-	.	ID=id-ML0108-2;Note=PS00061 Short-chain dehydrogenases/reductases family signature;gbkey=misc_feature;gene=ML0108
AL450380.1	EMBL	gene	150128	151510	.	-	.	ID=gene-ML0109;Name=ML0109;gbkey=Gene;gene=ML0109;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	150128	151510	.	-	0	ID=cds-CAC29617.1;Parent=gene-ML0109;Dbxref=GOA:Q9CDA4,InterPro:IPR006094,InterPro:IPR007173,InterPro:IPR016166,InterPro:IPR016169,UniProtKB/TrEMBL:Q9CDA4,NCBI_GP:CAC29617.1;Name=CAC29617.1;Note=Similar to M. tuberculosis Rv3790%2C putative oxidoreductase%2C TR:P72056 (EMBL:AL123456) (461 aa)%3B Fasta score E(): 0%2C 86.6%25 identity in 461 aa overlap. Also similar to many bacterial putative oxidoreductases. Contains Pfam match to entry PF01565 FAD_binding_4%2C FAD binding domain.;gbkey=CDS;gene=ML0109;product=putative FAD-linked oxidoreductase;protein_id=CAC29617.1;transl_table=11
AL450380.1	EMBL	sequence_feature	150956	151489	.	-	.	ID=id-ML0109;Note=Pfam match to entry PF01565 FAD_binding_4%2C FAD binding domain%2C score -2.30%2C E-value 4.3e-06;gbkey=misc_feature;gene=ML0109
AL450380.1	EMBL	ribosome_entry_site	150137	150140	.	-	.	ID=id-ML0109-2;Parent=gene-ML0109;Note=possible RBS;gbkey=regulatory;gene=ML0109;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	151578	151949	.	-	.	ID=gene-ML0110;Name=ML0110;gbkey=Gene;gene=ML0110;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	151578	151949	.	-	0	ID=cds-CAC29618.1;Parent=gene-ML0110;Dbxref=GOA:Q9CDA3,InterPro:IPR007267,NCBI_GP:CAC29618.1;Name=CAC29618.1;Note=Similar to M. tuberculosis Rv3789%2C hypothetical protein%2C SW:Y1I9_MYCTU (P72055) (121 aa)%3B Fasta score E(): 0%2C 73.0%25 identity in 122 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0110;product=possible membrane protein;protein_id=CAC29618.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	151953	151956	.	-	.	ID=id-AL450380.1:151953..151956;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	152204	152371	.	-	.	ID=gene-ML0111;Name=ML0111;gbkey=Gene;gene=ML0111;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	152204	152371	.	-	0	ID=cds-ML0111;Parent=gene-ML0111;Note=Possible pseudogene of M. tuberculosis orthologue Rv3788 (Best blastx score 157);gbkey=CDS;gene=ML0111;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	152783	153613	.	-	.	ID=gene-ML0112;Name=ML0112;gbkey=Gene;gene=ML0112;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	152783	153613	.	-	0	ID=cds-CAC29620.1;Parent=gene-ML0112;Dbxref=GOA:Q9CDA2,InterPro:IPR013525,UniProtKB/TrEMBL:Q9CDA2,NCBI_GP:CAC29620.1;Name=CAC29620.1;Note=Similar to M. tuberculosis Rv3783%2C integral membrane protein%2C TR:P72049 (EMBL:AL123456) (280 aa)%3B Fasta score E(): 0%2C 84.3%25 identity in 280 aa overlap. Similar to Yersinia enterocolitica rfbD%2C O-antigen export system permease protein%2C SW:RFBD_YEREN (Z18920) (259 aa)%3B Fasta score E(): 2.9e-32%2C 28.2%25 identity in 259 aa overlap and to other membrane proteins involved in lipopolysaccharide transport. Contains Pfam match to entry PF01061 ABC2_membrane%2C ABC-2 type transporter.;gbkey=CDS;gene=ML0112;product=putative ABC transporter component;protein_id=CAC29620.1;transl_table=11
AL450380.1	EMBL	sequence_feature	152795	153556	.	-	.	ID=id-ML0112;Note=Pfam match to entry PF01061 ABC2_membrane%2C ABC-2 type transporter%2C score 276.20%2C E-value 4.3e-79;gbkey=misc_feature;gene=ML0112
AL450380.1	EMBL	ribosome_entry_site	153624	153629	.	-	.	ID=id-AL450380.1:153624..153629;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	153663	154514	.	-	.	ID=gene-rfbE;Name=rfbE;gbkey=Gene;gene=rfbE;gene_biotype=protein_coding;gene_synonym=ML0113
AL450380.1	EMBL	CDS	153663	154514	.	-	0	ID=cds-CAC29621.1;Parent=gene-rfbE;Dbxref=GOA:Q9CDA1,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:Q9CDA1,NCBI_GP:CAC29621.1;Name=CAC29621.1;Note=Similar to M. tuberculosis Rv3782%2C putative glycosyl transferase%2C TR:P72048. Shows very weak similarity to proteins involved in lipopolysaccharide biosynthesis.;gbkey=CDS;gene=rfbE;product=putative glycosyl transferase;protein_id=CAC29621.1;transl_table=11
AL450380.1	EMBL	gene	154576	155394	.	-	.	ID=gene-ML0114;Name=ML0114;gbkey=Gene;gene=ML0114;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	154576	155394	.	-	0	ID=cds-CAC29622.1;Parent=gene-ML0114;Dbxref=GOA:Q9CDA0,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CDA0,NCBI_GP:CAC29622.1;Name=CAC29622.1;Note=Similar to M. tuberculosis Rv3781%2C putative ABC transporter component%2C TR:P72047 (EMBL:AL123456) (273 aa)%3B Fasta score E(): 0%2C 91.4%25 identity in 267 aa overlap. Similar to Yersinia enterocolitica rfbE%2C O-antigen export system ATP-binding protein%2C SW:RFBE_YEREN (Q56903) (239 aa)%3B Fasta score E(): 0%2C 46.9%25 identity in 224 aa overlap and to other proteins involved in lipopolysaccharide transport. Contains Pfam match to entry PF00005 ABC_tran%2C ABC transporter. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML0114;product=putative ABC transporter ATP-binding component;protein_id=CAC29622.1;transl_table=11
AL450380.1	EMBL	sequence_feature	154702	155214	.	-	.	ID=id-ML0114;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 118.80%2C E-value 1e-31;gbkey=misc_feature;gene=ML0114
AL450380.1	EMBL	sequence_feature	155170	155193	.	-	.	ID=id-ML0114-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML0114
AL450380.1	EMBL	gene	155413	155937	.	-	.	ID=gene-ML0115;Name=ML0115;gbkey=Gene;gene=ML0115;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	155413	155937	.	-	0	ID=cds-CAC29623.1;Parent=gene-ML0115;Dbxref=InterPro:IPR019695,NCBI_GP:CAC29623.1;Name=CAC29623.1;Note=Similar to M. tuberculosis Rv3780%2C hypothetical protein%2C SW:Y1I0_MYCTU (P72046) (178 aa)%3B Fasta score E(): 0%2C 82.9%25 identity in 170 aa overlap and to Streptomyces coelicolor SCGD3.23C%2C hypothetical protein%2C TR:Q9XA56 (EMBL:AL096822) (179 aa)%3B Fasta score E(): 0%2C 65.7%25 identity in 178 aa overlap.;gbkey=CDS;gene=ML0115;product=conserved hypothetical protein;protein_id=CAC29623.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	155949	155954	.	-	.	ID=id-AL450380.1:155949..155954;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	155965	157929	.	-	.	ID=gene-ML0116;Name=ML0116;gbkey=Gene;gene=ML0116;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	155965	157929	.	-	0	ID=cds-CAC29624.1;Parent=gene-ML0116;Dbxref=UniProtKB/TrEMBL:Q9CD98,NCBI_GP:CAC29624.1;Name=CAC29624.1;Note=Similar to M. tuberculosis Rv3779%2C unknown membrane protein%2C TR:P72045 (EMBL:AL123456) (666 aa)%3B Fasta score E(): 0%2C 66.5%25 identity in 666 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0116;product=putative membrane protein;protein_id=CAC29624.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	158044	158050	.	+	.	ID=id-AL450380.1:158044..158050;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	158056	159252	.	+	.	ID=gene-ML0117;Name=ML0117;gbkey=Gene;gene=ML0117;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	158056	159252	.	+	0	ID=cds-CAC29625.1;Parent=gene-ML0117;Dbxref=GOA:Q9CD97,InterPro:IPR000192,InterPro:IPR011340,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q9CD97,NCBI_GP:CAC29625.1;Name=CAC29625.1;Note=Similar to M. tuberculosis Rv3778c%2C conserved hypothetical protein%2C TR:P72044 (EMBL:AL123456) (398 aa)%3B Fasta score E(): 0%2C 83.4%25 identity in 398 aa overlap. Also similar to many bacterial hypothetical proteins.%3B~Similar to ML0596 and to the C-terminal half of ML0842;gbkey=CDS;gene=ML0117;product=conserved hypothetical protein;protein_id=CAC29625.1;transl_table=11
AL450380.1	EMBL	gene	159249	160259	.	-	.	ID=gene-ML0118;Name=ML0118;gbkey=Gene;gene=ML0118;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	159249	160259	.	-	0	ID=cds-CAC29626.1;Parent=gene-ML0118;Dbxref=GOA:Q9CD96,InterPro:IPR002085,InterPro:IPR011032,InterPro:IPR013149,InterPro:IPR013154,InterPro:IPR014189,InterPro:IPR016040,UniProtKB/TrEMBL:Q9CD96,NCBI_GP:CAC29626.1;Name=CAC29626.1;Note=Similar to M. tuberculosis Rv3777%2C putative oxidireductase%2C TR:P72043. Similar to many oxidoreductases from both bacteria and higher organisms e.g. Mus musculus cryZ%2C quinone oxidoreductase%2C SW:QOR_MOUSE (P47199) (331 aa)%3B Fasta score E(): 5.5e-21%2C 31.0%25 identity in 306 aa overlap. Contains Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases.%3B~Similar to domains of polyketide synthases ML0135%2C ML0139%2C ML1229 and ML2355;gbkey=CDS;gene=ML0118;product=putative oxidireductase;protein_id=CAC29626.1;transl_table=11
AL450380.1	EMBL	sequence_feature	159294	160232	.	-	.	ID=id-ML0118;Note=Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases%2C score 48.50%2C E-value 2.4e-12;gbkey=misc_feature;gene=ML0118
AL450380.1	EMBL	gene	160312	160401	.	+	.	ID=gene-serU;Name=serU;gbkey=Gene;gene=serU;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	160312	160401	.	+	.	ID=rna-serU;Parent=gene-serU;Note=tRNA Ser anticodon TGA%2C Cove score 59.58;gbkey=tRNA;gene=serU;product=tRNA-Ser
AL450380.1	EMBL	exon	160312	160401	.	+	.	ID=exon-serU-1;Parent=rna-serU;Note=tRNA Ser anticodon TGA%2C Cove score 59.58;gbkey=tRNA;gene=serU;product=tRNA-Ser
AL450380.1	EMBL	gene	160495	161730	.	-	.	ID=gene-lipE;Name=lipE;gbkey=Gene;gene=lipE;gene_biotype=protein_coding;gene_synonym=ML0119
AL450380.1	EMBL	CDS	160495	161730	.	-	0	ID=cds-CAC29627.1;Parent=gene-lipE;Dbxref=GOA:Q9CD95,InterPro:IPR001466,InterPro:IPR012338,UniProtKB/TrEMBL:Q9CD95,NCBI_GP:CAC29627.1;Name=CAC29627.1;Note=Similar to M. tuberculosis Rv3775%2C probable hydrolase%2C TR:P72041 (EMBL:AL123456) (415 aa)%3B Fasta score E(): 0%2C 84.7%25 identity in 406 aa overlap. Similar to bacterial esterases e.g. Streptomyces chrysomallus estA%2C esterase A%2C TR:O87861 (EMBL:Z15137) (389 aa)%3B Fasta score E(): 2.6e-18%2C 29.9%25 identity in 348 aa overlap.;gbkey=CDS;gene=lipE;product=probable hydrolase;protein_id=CAC29627.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	161739	161742	.	-	.	ID=id-AL450380.1:161739..161742;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	161741	162577	.	-	.	ID=gene-echA1;Name=echA1;gbkey=Gene;gene=echA1;gene_biotype=protein_coding;gene_synonym=ML0120
AL450380.1	EMBL	CDS	161741	162577	.	-	0	ID=cds-CAC29628.1;Parent=gene-echA1;Dbxref=GOA:Q9CD94,InterPro:IPR001753,InterPro:IPR014748,InterPro:IPR029045,UniProtKB/TrEMBL:Q9CD94,NCBI_GP:CAC29628.1;Name=CAC29628.1;Note=Similar to M. tuberculosis Rv3774%2C putative enoyl-CoA hydratase%2C TR:P75019 (EMBL:AL123456) (274 aa)%3B Fasta score E(): 0%2C 88.3%25 identity in 274 aa overlap. Similar to many e.g. Rattus norvegicus ech1%2C delta3%2C5-delta2%2C4-dienoyl-coa isomerase precursor%2C SW:ECH1_RAT (Q62651) (327 aa)%3B Fasta score E(): 3.5e-31%2C 38.8%25 identity in 276 aa overlap and bacterial putative enoyl-CoA hydratases. Contains Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family.%3B~Similar to ML1241%2C ML1724%2C ML2118 and ML2402;gbkey=CDS;gene=echA1;product=putative enoyl-CoA hydratase;protein_id=CAC29628.1;transl_table=11
AL450380.1	EMBL	sequence_feature	161975	162517	.	-	.	ID=id-echA1;Note=Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family%2C score 99.60%2C E-value 6.2e-26;gbkey=misc_feature;gene=echA1
AL450380.1	EMBL	gene	163770	164039	.	-	.	ID=gene-ML0121;Name=ML0121;gbkey=Gene;gene=ML0121;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	163770	164039	.	-	0	ID=cds-CAC29629.1;Parent=gene-ML0121;Dbxref=InterPro:IPR025951,UniProtKB/TrEMBL:Q9CD93,NCBI_GP:CAC29629.1;Name=CAC29629.1;Note=Shares region of weak similarity with Streptomyces coelicolor SC6A5.32C%2C hypothetical protein%2C TR:Q9X7X8 (EMBL:AL049485) (155 aa)%3B Fasta score E(): 0.0056%2C 43.1%25 identity in 58 aa overlap.;gbkey=CDS;gene=ML0121;product=hypothetical protein;protein_id=CAC29629.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	164048	164051	.	-	.	ID=id-AL450380.1:164048..164051;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	164082	164876	.	-	.	ID=gene-hisC2;Name=hisC2;gbkey=Gene;gene=hisC2;gene_biotype=pseudogene;gene_synonym=ML0122;pseudo=true
AL450380.1	EMBL	CDS	164082	164876	.	-	0	ID=cds-hisC2;Parent=gene-hisC2;Note=Possible pseudogene of M. tuberculosis orthologue hisC2 (Best blastx score 574);gbkey=CDS;gene=hisC2;product=histidinol-phosphate aminotransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	165035	165127	.	+	.	ID=gene-serT;Name=serT;gbkey=Gene;gene=serT;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	165035	165127	.	+	.	ID=rna-serT;Parent=gene-serT;Note=tRNA Ser anticodon GCT%2C Cove score 56.23;gbkey=tRNA;gene=serT;product=tRNA-Ser
AL450380.1	EMBL	exon	165035	165127	.	+	.	ID=exon-serT-1;Parent=rna-serT;Note=tRNA Ser anticodon GCT%2C Cove score 56.23;gbkey=tRNA;gene=serT;product=tRNA-Ser
AL450380.1	EMBL	gene	165147	165219	.	+	.	ID=gene-argU;Name=argU;gbkey=Gene;gene=argU;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	165147	165219	.	+	.	ID=rna-argU;Parent=gene-argU;Note=tRNA Arg anticodon ACG%2C Cove score 76.52;gbkey=tRNA;gene=argU;product=tRNA-Arg
AL450380.1	EMBL	exon	165147	165219	.	+	.	ID=exon-argU-1;Parent=rna-argU;Note=tRNA Arg anticodon ACG%2C Cove score 76.52;gbkey=tRNA;gene=argU;product=tRNA-Arg
AL450380.1	EMBL	pseudogene	166460	166833	.	+	.	ID=gene-ML0123;Name=ML0123;gbkey=Gene;gene=ML0123;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	166460	166833	.	+	0	ID=cds-ML0123;Parent=gene-ML0123;Note=Possible pseudogene of M. tuberculosis orthologue Rv3767c (Best blastx score 169);gbkey=CDS;gene=ML0123;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	166949	167389	.	-	.	ID=gene-ML0124;Name=ML0124;gbkey=Gene;gene=ML0124;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	166949	167389	.	-	0	ID=cds-CAC29632.1;Parent=gene-ML0124;Dbxref=InterPro:IPR005031,InterPro:IPR023393,UniProtKB/TrEMBL:Q9CD92,NCBI_GP:CAC29632.1;Name=CAC29632.1;Note=Shows weak similarity to M. tuberculosis Rv2186c%2C hypothetical protein%2C TR:O53519 (EMBL:AL123456) (144 aa)%3B Fasta score E(): 3.7e-06%2C 27.5%25 identity in 131 aa overlap and Streptomyces coelicolor SC6G10.02C%2C hypothetical protein%2C TR:Q9X7Y8 (EMBL:AL049497) (144 aa)%3B Fasta score E(): 7e-05%2C 21.9%25 identity in 137 aa overlap. Previously sequenced as TR:O06090 (EMBL:Z95398) (156 aa)%3B Fasta score E(): 0%2C 70.1%25 identity in 144 aa overlap.%3B~Similar to ML2629 and shows weaker similarity to ML0889;gbkey=CDS;gene=ML0124;product=conserved hypothetical protein;protein_id=CAC29632.1;transl_table=11
AL450380.1	EMBL	gene	167598	168914	.	+	.	ID=gene-ML0125;Name=ML0125;gbkey=Gene;gene=ML0125;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	167598	168914	.	+	0	ID=cds-CAC29633.1;Parent=gene-ML0125;Dbxref=GOA:Q9CD91,InterPro:IPR002213,UniProtKB/TrEMBL:Q9CD91,NCBI_GP:CAC29633.1;Name=CAC29633.1;Note=Similar to M. tuberculosis Rv2958c%2C putative glycosyl transferase%2C TR:P95134 (EMBL:AL123456) (428 aa)%3B Fasta score E(): 0%2C 74.6%25 identity in 418 aa overlap and Rv2962c%2C putative glycosyl transferase%2C TR:P95130 (EMBL:AL123456) (449 aa)%3B Fasta score E(): 0%2C 77.5%25 identity in 426 aa overlap. Similar to Streptomyces venezuelae desVII%2C glycosyl transferase from a macrolide antibiotic biosynthesis gene cluster%2C TR:Q9ZGH7 (EMBL:AF079762) (426 aa)%3B Fasta score E(): 1e-09%2C 30.0%25 identity in 237 aa overlap. Shows similarity to bacterial and eukaryotic glycosyl transferases.%3B~Similar to ML0128 and shows weaker similarity to ML0985;gbkey=CDS;gene=ML0125;product=putative glycosyl transferase;protein_id=CAC29633.1;transl_table=11
AL450380.1	EMBL	repeat_region	167887	168892	.	+	.	ID=id-ML0125;Note=1006 bp repeat%2C 96%25 identical to region 171902..172907 in ML0128;gbkey=repeat_region;gene=ML0125
AL450380.1	EMBL	ribosome_entry_site	169572	169578	.	+	.	ID=id-AL450380.1:169572..169578;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	169585	170406	.	+	.	ID=gene-ML0126;Name=ML0126;gbkey=Gene;gene=ML0126;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	169585	170406	.	+	0	ID=cds-CAC29634.1;Parent=gene-ML0126;Dbxref=InterPro:IPR029063,UniProtKB/TrEMBL:Q9CD90,NCBI_GP:CAC29634.1;Name=CAC29634.1;Note=Unknown function.;gbkey=CDS;gene=ML0126;product=hypothetical protein;protein_id=CAC29634.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	170650	170655	.	+	.	ID=id-AL450380.1:170650..170655;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	170662	171351	.	+	.	ID=gene-ML0127;Name=ML0127;gbkey=Gene;gene=ML0127;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	170662	171351	.	+	0	ID=cds-CAC29635.1;Parent=gene-ML0127;Dbxref=GOA:Q9CD89,InterPro:IPR007072,InterPro:IPR029063,NCBI_GP:CAC29635.1;Name=CAC29635.1;Note=Similar to M. tuberculosis Rv2959c%2C hypothetical protein%2C TR:Q50457 (EMBL:AL123456) (245 aa)%3B Fasta score E(): 0%2C 76.1%25 identity in 226 aa overlap. Shows weak similarity to Streptomyces clavuligerus cmcI%2C cephalosporin hydroxylase component of 7 alpha-cephem-methoxylase%2C TR:O85726 (EMBL:AF073896) (236 aa)%3B Fasta score E(): 0.0001%2C 27.6%25 identity in 163 aa overlap and to other hypothetical proteins.;gbkey=CDS;gene=ML0127;product=hypothetical protein;protein_id=CAC29635.1;transl_table=11
AL450380.1	EMBL	gene	171616	172923	.	+	.	ID=gene-ML0128;Name=ML0128;gbkey=Gene;gene=ML0128;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	171616	172923	.	+	0	ID=cds-CAC29636.1;Parent=gene-ML0128;Dbxref=GOA:Q9CD88,InterPro:IPR002213,UniProtKB/TrEMBL:Q9CD88,NCBI_GP:CAC29636.1;Name=CAC29636.1;Note=Similar to M. tuberculosis Rv2958c%2C putative glycosyl transferase%2C TR:P95134 (EMBL:AL123456) (428 aa)%3B Fasta score E(): 0%2C 75.1%25 identity in 417 aa overlap and Rv2962c%2C putative glycosyl transferase%2C TR:P95130 (EMBL:AL123456) (449 aa)%3B Fasta score E(): 0%2C 74.4%25 identity in 425 aa overlap. Similar to Streptomyces venezuelae desVII%2C glycosyl transferase from a macrolide antibiotic biosynthesis gene cluster%2C TR:Q9ZGH7 (EMBL:AF079762) (426 aa)%3B Fasta score E(): 1.1e-09%2C 30.9%25 identity in 223 aa overlap. Shows similarity to bacterial and eukaryotic glycosyl transferases.%3B~Similar to ML0125 and shows weaker similarity to ML0985;gbkey=CDS;gene=ML0128;product=putative glycosyl transferase;protein_id=CAC29636.1;transl_table=11
AL450380.1	EMBL	repeat_region	171902	172907	.	+	.	ID=id-ML0128;Note=1006 bp repeat%2C 96%25 identical to region 167887..168892 in ML0125;gbkey=repeat_region;gene=ML0128
AL450380.1	EMBL	gene	173170	174426	.	-	.	ID=gene-ML0129;Name=ML0129;gbkey=Gene;gene=ML0129;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	173170	174426	.	-	0	ID=cds-CAC29637.1;Parent=gene-ML0129;Dbxref=GOA:Q9CD87,InterPro:IPR005097,InterPro:IPR016040,NCBI_GP:CAC29637.1;Name=CAC29637.1;Note=Similar to M. tuberculosis Rv2953%2C conserved hypothetical protein%2C TR:P95139 (EMBL:AL123456) (418 aa)%3B Fasta score E(): 0%2C 86.6%25 identity in 418 aa overlap and to Rv2449c%2C conserved hypothetical protein%2C TR:O53176 (EMBL:AL123456) (419 aa)%3B Fasta score E(): 0%2C 64.9%25 identity in 419 aa overlap. Similar to many bacterial hypothetical proteins.;gbkey=CDS;gene=ML0129;product=conserved hypothetical protein;protein_id=CAC29637.1;transl_table=11
AL450380.1	EMBL	gene	174466	175278	.	-	.	ID=gene-ML0130;Name=ML0130;gbkey=Gene;gene=ML0130;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	174466	175278	.	-	0	ID=cds-CAC29638.1;Parent=gene-ML0130;Dbxref=GOA:Q9CD86,InterPro:IPR013216,InterPro:IPR029063,NCBI_GP:CAC29638.1;Name=CAC29638.1;Note=Similar to M.tuberculosis Rv2952%2C hypothetical protein%2C TR:Q50464 (EMBL:AL123456) (270 aa)%3B Fasta score E(): 0%2C 83.7%25 identity in 270 aa overlap. Similar to in part to Streptomyces hygroscopicus rapM%2C methyltransferase involved in rapamycin biosynthesis%2C TR:Q54303 (EMBL:X86780) (317 aa)%3B Fasta score E(): 5e-14%2C 38.6%25 identity in 158 aa overlap and shows weak similarity to CDS associated with several gene clusters encoding polyketide biosynthesis.;gbkey=CDS;gene=ML0130;product=conserved hypothetical protein;protein_id=CAC29638.1;transl_table=11
AL450380.1	EMBL	gene	175441	176589	.	+	.	ID=gene-ML0131;Name=ML0131;gbkey=Gene;gene=ML0131;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	175441	176589	.	+	0	ID=cds-CAC29639.1;Parent=gene-ML0131;Dbxref=GOA:Q9CD85,InterPro:IPR011251,NCBI_GP:CAC29639.1;Name=CAC29639.1;Note=Similar to M. tuberculosis Rv2951c%2C putative oxidoreductase%2C TR:P95140 (EMBL:AL123456) (381 aa)%3B Fasta score E(): 0%2C 84.8%25 identity in 382 aa overlap. Similar to Archaeoglobus fulgidus AF2411%2C conserved hypothetical protein%2C TR:O30260 (EMBL:AE001109) (363 aa)%3B Fasta score E(): 0%2C 31.5%25 identity in 362 aa overlap. Shows weak similarity to bacterial oxidoreductases e.g. Mycobacterium smegmatis fgd%2C F420-dependent glucose-6-phosphate dehydrogenase%2C TR:O68447 (EMBL:AF041061) (336 aa)%3B Fasta score E(): 1.1e-09%2C 27.7%25 identity in 292 aa overlap.%3B~Shows weak similarity to ML0269;gbkey=CDS;gene=ML0131;product=putative oxidoreductase;protein_id=CAC29639.1;transl_table=11
AL450380.1	EMBL	gene	177170	179212	.	+	.	ID=gene-fadD29;Name=fadD29;gbkey=Gene;gene=fadD29;gene_biotype=protein_coding;gene_synonym=ML0132
AL450380.1	EMBL	CDS	177170	179212	.	+	0	ID=cds-CAC29640.1;Parent=gene-fadD29;Dbxref=GOA:Q9CD84,InterPro:IPR000873,UniProtKB/TrEMBL:Q9CD84,NCBI_GP:CAC29640.1;Name=CAC29640.1;Note=Similar to several putative acyl-CoA synthases from M. tuberculosis e.g. M. tuberculosis Rv2950c%2C fadD29%2C putative acyl-CoA synthase%2C TR:P95141 (EMBL:AL123456) (619 aa)%3B Fasta score E(): 0%2C 80.2%25 identity in 620 aa overlap. Similar to Mycobacterium bovis BCG ORF3%2C acyl-CoA synthase%2C TR:P71495 (EMBL:U75685) (582 aa)%3B Fasta score E(): 0%2C 58.5%25 identity in 585 aa overlap and to domains of polyketide synthases e.g. Myxococcus xanthus safB%2C saframycin Mx1 synthetase B%2C TR:Q50857 (EMBL:U24657) (1770 aa)%3B Fasta score E(): 0%2C 36.2%25 identity in 589 aa overlap. Contains Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme.%3B~Similar to ML0100%2C ML0138%2C ML1234 and ML2358;gbkey=CDS;gene=fadD29;product=putative acyl-CoA synthetase;protein_id=CAC29640.1;transl_table=11
AL450380.1	EMBL	sequence_feature	177581	178942	.	+	.	ID=id-fadD29;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score -14.90%2C E-value 1.4e-14;gbkey=misc_feature;gene=fadD29
AL450380.1	EMBL	gene	179256	179888	.	+	.	ID=gene-ML0133;Name=ML0133;gbkey=Gene;gene=ML0133;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	179256	179888	.	+	0	ID=cds-CAC29641.1;Parent=gene-ML0133;Dbxref=GOA:Q9CD83,InterPro:IPR002800,InterPro:IPR028978,NCBI_GP:CAC29641.1;Name=CAC29641.1;Note=Similar to M. tuberculosis Rv2949c%2C hypothetical protein%2C TR:O86325 (EMBL:AL123456) (199 aa)%3B Fasta score E(): 0%2C 62.6%25 identity in 195 aa overlap. Shows weaker similarity to Archaeoglobus fulgidus AF1396%2C hypothetical protein%2C TR:O28875 (EMBL:AE001008) (162 aa)%3B Fasta score E(): 4.2e-05%2C 26.6%25 identity in 154 aa overlap. Contains Pfam match to entry PF01947 DUF98%2C Protein of unknown function.;gbkey=CDS;gene=ML0133;product=conserved hypothetical protein;protein_id=CAC29641.1;transl_table=11
AL450380.1	EMBL	sequence_feature	179295	179786	.	+	.	ID=id-ML0133;Note=Pfam match to entry PF01947 DUF98%2C Protein of unknown function%2C score -37.20%2C E-value 0.0013;gbkey=misc_feature;gene=ML0133
AL450380.1	EMBL	gene	180027	182150	.	+	.	ID=gene-fadD22;Name=fadD22;gbkey=Gene;gene=fadD22;gene_biotype=protein_coding;gene_synonym=ML0134
AL450380.1	EMBL	CDS	180027	182150	.	+	0	ID=cds-CAC29642.1;Parent=gene-fadD22;Dbxref=GOA:Q9CD82,InterPro:IPR000873,InterPro:IPR009081,InterPro:IPR020806,InterPro:IPR025110,UniProtKB/TrEMBL:Q9CD82,NCBI_GP:CAC29642.1;Name=CAC29642.1;Note=Similar to M. tuberculosis Rv2948c%2C acyl-CoA synthase%2C TR:P96283 (EMBL:AL123456) (705 aa)%3B Fasta score E(): 0%2C 75.9%25 identity in 705 aa overlap. Similar to many acyl-CoA synthases e.g. Rhodopseudomonas palustris%2C badA%2C benzoate-coenzyme A ligase%2C TR:Q59760 (EMBL:L42322) (521 aa)%3B Fasta score E(): 0%2C 31.4%25 identity in 494 aa overlap. Contains Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site. Contains Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme.%3B~Similar to ML1051%2C ML1994%2C ML2257 and ML2546;gbkey=CDS;gene=fadD22;product=putative acyl-CoA synthetase;protein_id=CAC29642.1;transl_table=11
AL450380.1	EMBL	sequence_feature	180120	181280	.	+	.	ID=id-fadD22;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score 66.50%2C E-value 4e-19;gbkey=misc_feature;gene=fadD22
AL450380.1	EMBL	sequence_feature	181674	181877	.	+	.	ID=id-fadD22-2;Note=Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site%2C score 43.60%2C E-value 2e-10;gbkey=misc_feature;gene=fadD22
AL450380.1	EMBL	ribosome_entry_site	182156	182160	.	+	.	ID=id-AL450380.1:182156..182160;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	182173	188484	.	+	.	ID=gene-ML0135;Name=ML0135;gbkey=Gene;gene=ML0135;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	182173	188484	.	+	0	ID=cds-CAC29643.1;Parent=gene-ML0135;Dbxref=GOA:Q9CD81,InterPro:IPR001227,InterPro:IPR002198,InterPro:IPR006162,InterPro:IPR009081,InterPro:IPR011032,InterPro:IPR013149,InterPro:IPR013154,InterPro:IPR014030,InterPro:IPR014031,InterPro:IPR014043,InterPro:IPR015083,InterPro:IPR016035,InterPro:IPR016036,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR016040,InterPro:IPR018201,InterPro:IPR020801,InterPro:IPR020806,InterPro:IPR020807,InterPro:IPR020841,InterPro:IPR020842,InterPro:IPR020843,UniProtKB/TrEMBL:Q9CD81,NCBI_GP:CAC29643.1;Name=CAC29643.1;Note=Similar to many polyketide synthases from M. tuberculosis e.g. N-terminus is similar to Rv2947c%2C pks15%2C probable polyketide synthase%2C TR:P96284 (EMBL:Z83858) (496 aa)%3B Fasta score E(): 0%2C 90.5%25 identity in 485 aa overlap and the remainder is similar to Rv2946c%2C pks1%2C probable polyketide synthase%2C TR:P96285 (EMBL:Z83858) (1616 aa)%3B Fasta score E(): 0%2C 82.5%25 identity in 1620 aa overlap. Similar to many others e.g. Streptomyces noursei NysC%2C nystatin biosynthesis polyketide synthase%2C TR:AAF71776 (EMBL:AF263912) (11096 aa)%3B Fasta score E(): 0%2C 50.2%25 identity in 2161 aa overlap. Contains Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases. Contains Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase. Contains Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain. Contains Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site. Contains PS00012 Phosphopantetheine attachment site. Contains PS00606 Beta-ketoacyl synthases active site.%3B~Similar to ML0101%2C ML0139%2C ML1229%2C ML2353%2C ML2354%2C ML2355%2C ML2356 and ML2357;gbkey=CDS;gene=ML0135;product=putative polyketide synthase;protein_id=CAC29643.1;transl_table=11
AL450380.1	EMBL	sequence_feature	182302	183570	.	+	.	ID=id-ML0135;Note=Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase%2C score 753.90%2C E-value 6.6e-223;gbkey=misc_feature;gene=ML0135
AL450380.1	EMBL	sequence_feature	182776	182826	.	+	.	ID=id-ML0135-2;Note=PS00606 Beta-ketoacyl synthases active site;gbkey=misc_feature;gene=ML0135
AL450380.1	EMBL	sequence_feature	183877	184821	.	+	.	ID=id-ML0135-3;Note=Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain%2C score 226.70%2C E-value 3.4e-64;gbkey=misc_feature;gene=ML0135
AL450380.1	EMBL	sequence_feature	186370	187281	.	+	.	ID=id-ML0135-4;Note=Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases%2C score -67.70%2C E-value 3.9e-06;gbkey=misc_feature;gene=ML0135
AL450380.1	EMBL	sequence_feature	188185	188388	.	+	.	ID=id-ML0135-5;Note=Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site%2C score 76.30%2C E-value 1.7e-19;gbkey=misc_feature;gene=ML0135
AL450380.1	EMBL	sequence_feature	188263	188310	.	+	.	ID=id-ML0135-6;Note=PS00012 Phosphopantetheine attachment site;gbkey=misc_feature;gene=ML0135
AL450380.1	EMBL	ribosome_entry_site	188537	188540	.	+	.	ID=id-AL450380.1:188537..188540;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	188551	189252	.	+	.	ID=gene-lppX;Name=lppX;gbkey=Gene;gene=lppX;gene_biotype=protein_coding;gene_synonym=ML0136
AL450380.1	EMBL	CDS	188551	189252	.	+	0	ID=cds-CAC29644.1;Parent=gene-lppX;Dbxref=GOA:Q9CD80,InterPro:IPR009830,InterPro:IPR029046,NCBI_GP:CAC29644.1;Name=CAC29644.1;Note=Similar to M. tuberculosis lipoproteins e.g. M. tuberculosis lppX%2C putative lipoprotein%2C SW:LPPX_MYCTU (Z83858) (233 aa)%3B Fasta score E(): 0%2C 76.4%25 identity in 233 aa overlap. Similar to Mycobacterium bovis lprG%2C 27 kDa lipoprotein antigen%2C SW:LPRG_MYCTU (AJ000500) (236 aa)%3B Fasta score E(): 2.5e-13%2C 31.2%25 identity in 202 aa overlap. Contains a probable N-terminal signal sequence. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.%3B~Similar to ML0557;gbkey=CDS;gene=lppX;product=putative lipoprotein;protein_id=CAC29644.1;transl_table=11
AL450380.1	EMBL	sequence_feature	188575	188607	.	+	.	ID=id-lppX;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=lppX
AL450380.1	EMBL	gene	189253	191961	.	-	.	ID=gene-mmpL7;Name=mmpL7;gbkey=Gene;gene=mmpL7;gene_biotype=protein_coding;gene_synonym=ML0137
AL450380.1	EMBL	CDS	189253	191961	.	-	0	ID=cds-CAC29645.1;Parent=gene-mmpL7;Dbxref=GOA:Q7AQN7,InterPro:IPR004869,UniProtKB/TrEMBL:Q7AQN7,NCBI_GP:CAC29645.1;Name=CAC29645.1;Note=Similar to members of the M. tuberculosis mmpL family of membrane proteins e.g. Rv2942%2C mmpL7%2C putative membrane protein%2C SW:MML7_MYCTU (P96289) (920 aa)%3B Fasta score E(): 0%2C 68.6%25 identity in 881 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.%3B~Similar to ML1231 and ML2378. Similar to pseudogene ML2375;gbkey=CDS;gene=mmpL7;product=putative membrane protein;protein_id=CAC29645.1;transl_table=11
AL450380.1	EMBL	gene	192013	193752	.	-	.	ID=gene-fadD28;Name=fadD28;gbkey=Gene;gene=fadD28;gene_biotype=protein_coding;gene_synonym=ML0138
AL450380.1	EMBL	CDS	192013	193752	.	-	0	ID=cds-CAC29646.1;Parent=gene-fadD28;Dbxref=GOA:Q9CD79,InterPro:IPR000873,UniProtKB/TrEMBL:Q9CD79,NCBI_GP:CAC29646.1;Name=CAC29646.1;Note=Similar to several putative acyl-CoA synthases from M. tuberculosis e.g. M. tuberculosis Rv2941%2C fadD29%2C putative acyl-CoA synthase%2C TR:P96290 (EMBL:AL123456) (580 aa)%3B Fasta score E(): 0%2C 81.9%25 identity in 580 aa overlap. Similar to Mycobacterium bovis BCG ORF3%2C acyl-CoA synthase%2C TR:P71495 (EMBL:U75685) (582 aa)%3B Fasta score E(): 0%2C 81.4%25 identity in 580 aa overlap and to domains of polyketide synthases e.g. Myxococcus xanthus safB%2C saframycin Mx1 synthetase B%2C TR:Q50857 (EMBL:U24657) (1770 aa)%3B Fasta score E(): 0%2C 35.8%25 identity in 590 aa overlap. Contains Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme.%3B~Similar to ML0100%2C ML0132%2C ML0243%2C ML1234%2C ML2358;gbkey=CDS;gene=fadD28;product=acyl-CoA synthetase;protein_id=CAC29646.1;transl_table=11
AL450380.1	EMBL	sequence_feature	192277	193635	.	-	.	ID=id-fadD28;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score -8.20%2C E-value 5.9e-15;gbkey=misc_feature;gene=fadD28
AL450380.1	EMBL	ribosome_entry_site	194207	194210	.	+	.	ID=id-AL450380.1:194207..194210;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	194221	200571	.	+	.	ID=gene-mas;Name=mas;gbkey=Gene;gene=mas;gene_biotype=protein_coding;gene_synonym=ML0139
AL450380.1	EMBL	CDS	194221	200571	.	+	0	ID=cds-CAC29647.1;Parent=gene-mas;Dbxref=GOA:Q9CD78,InterPro:IPR001227,InterPro:IPR006162,InterPro:IPR009081,InterPro:IPR011032,InterPro:IPR013149,InterPro:IPR013154,InterPro:IPR013968,InterPro:IPR014030,InterPro:IPR014031,InterPro:IPR014043,InterPro:IPR016035,InterPro:IPR016036,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR016040,InterPro:IPR018201,InterPro:IPR020801,InterPro:IPR020807,InterPro:IPR020841,InterPro:IPR020842,InterPro:IPR020843,UniProtKB/TrEMBL:Q9CD78,NCBI_GP:CAC29647.1;Name=CAC29647.1;Note=Similar to many polyketide synthases from M. tuberculosis e.g. Rv2940c%2C mas%2C mycocerosic acid synthase%2C TR:P96291 (EMBL:AL123456) (2111 aa)%3B Fasta score E(): 0%2C 88.0%25 identity in 2119 aa overlap. Similar to Mycobacterium bovis mas%2C mycocerosic acid synthase%2C SW:MCAS_MYCBO (Q02251) (2110 aa)%3B Fasta score E(): 0%2C 85.1%25 identity in 2122 aa overlap. Contains Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases. Contains Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase. Contains Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain. Contains Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site. Contains PS00012 Phosphopantetheine attachment site. Contains PS00606 Beta-ketoacyl synthases active site.%3B~Similar to ML0101%2C ML0135%2C ML1229%2C ML2353%2C ML2354%2C ML2355%2C ML2356 and ML2357;gbkey=CDS;gene=mas;product=putative mycocerosic synthase;protein_id=CAC29647.1;transl_table=11
AL450380.1	EMBL	sequence_feature	194242	195510	.	+	.	ID=id-mas;Note=Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase%2C score 619.80%2C E-value 1.6e-182;gbkey=misc_feature;gene=mas
AL450380.1	EMBL	sequence_feature	194722	194772	.	+	.	ID=id-mas-2;Note=PS00606 Beta-ketoacyl synthases active site;gbkey=misc_feature;gene=mas
AL450380.1	EMBL	sequence_feature	195832	196791	.	+	.	ID=id-mas-3;Note=Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain%2C score 500.60%2C E-value 1.2e-146;gbkey=misc_feature;gene=mas
AL450380.1	EMBL	sequence_feature	198499	199440	.	+	.	ID=id-mas-4;Note=Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases%2C score -26.80%2C E-value 2.5e-08;gbkey=misc_feature;gene=mas
AL450380.1	EMBL	sequence_feature	200299	200502	.	+	.	ID=id-mas-5;Note=Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site%2C score 71.50%2C E-value 3.6e-18;gbkey=misc_feature;gene=mas
AL450380.1	EMBL	sequence_feature	200377	200424	.	+	.	ID=id-mas-6;Note=PS00012 Phosphopantetheine attachment site;gbkey=misc_feature;gene=mas
AL450380.1	EMBL	pseudogene	200930	201848	.	+	.	ID=gene-ML0140;Name=ML0140;gbkey=Gene;gene=ML0140;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	200930	201848	.	+	0	ID=cds-ML0140;Parent=gene-ML0140;Note=Possible pseudogene similar to M. tuberculosis paralogue Rv0221 (Best blastx score 157);gbkey=CDS;gene=ML0140;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	202307	202561	.	-	.	ID=gene-ML0141;Name=ML0141;gbkey=Gene;gene=ML0141;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	202307	202561	.	-	0	ID=cds-CAC29649.1;Parent=gene-ML0141;Dbxref=UniProtKB/TrEMBL:Q9CD77,NCBI_GP:CAC29649.1;Name=CAC29649.1;Note=Improbable CDS suggested by GC frameplot. Possibly the remains of a disrupted gene.;gbkey=CDS;gene=ML0141;product=hypothetical protein;protein_id=CAC29649.1;transl_table=11
AL450380.1	EMBL	gene	204363	204611	.	+	.	ID=gene-ML0142;Name=ML0142;gbkey=Gene;gene=ML0142;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	204363	204611	.	+	0	ID=cds-CAC29650.1;Parent=gene-ML0142;Dbxref=UniProtKB/TrEMBL:Q9CD76,NCBI_GP:CAC29650.1;Name=CAC29650.1;Note=Unknown function. Contains hydrophobic%2C possible membrane-spanning region.;gbkey=CDS;gene=ML0142;product=possible membrane protein;protein_id=CAC29650.1;transl_table=11
AL450380.1	EMBL	repeat_region	204703	207085	.	-	.	ID=id-AL450380.1:204703..207085;Note=Dispersed repeat%2C LEPREP%2C copy 1;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	204890	204988	.	-	.	ID=gene-ML0143;Name=ML0143;gbkey=Gene;gene=ML0143;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	204890	204988	.	-	0	ID=cds-ML0143;Parent=gene-ML0143;Note=Similar to Agrobacterium tumefaciens transposase TR:Q44454 (EMBL:Z18270) (366 aa) fasta scores: E(): 0.0002%2C 51.5%25 id in 33 aa%2C and to Pseudomonas putida transposase tnpa1 TR:Q9R9U9 (EMBL:AJ245436) (355 aa) fasta scores: E(): 0.00088%2C 48.5%25 id in 33 aa;gbkey=CDS;gene=ML0143;pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	205253	206396	.	-	.	ID=gene-ML0144;Name=ML0144;gbkey=Gene;gene=ML0144;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	205253	206396	.	-	0	ID=cds-ML0144;Parent=gene-ML0144;Note=Similar to many e.g. Cryphonectria parasitica (Chesnut blight fungus) putative maturase TR:AAF27656 (EMBL:AF218567) (778 aa) fasta scores: E(): 7.8e-11%2C 29.2%25 id in 216 aa;gbkey=CDS;gene=ML0144;product=putative group II intron maturase-related protein;pseudo=true;transl_table=11
AL450380.1	EMBL	stem_loop	205716	205769	.	-	.	ID=id-ML0144;gbkey=stem_loop;gene=ML0144;pseudo=true
AL450380.1	EMBL	pseudogene	206601	206740	.	-	.	ID=gene-ML0145;Name=ML0145;gbkey=Gene;gene=ML0145;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	206601	206740	.	-	0	ID=cds-ML0145;Parent=gene-ML0145;Note=Similar to Pseudomonas putida transposase tnpa1 TR:Q9R9U9 (EMBL:AJ245436) (355 aa) fasta scores: E(): 3.4e-05%2C 47.8%25 id in 46 aa%2C and to Agrobacterium tumefaciens transposase TR:Q44454 (EMBL:Z18270) (366 aa) fasta scores: E(): 0.00026%2C 41.3%25 id in 46 aa;gbkey=CDS;gene=ML0145;pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	207086	207280	.	-	.	ID=id-AL450380.1:207086..207280;Note=195 bp sequence found at 5'-end of copies 1 and 3 of LEPREP;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	207844	207954	.	-	.	ID=gene-ML0146;Name=ML0146;gbkey=Gene;gene=ML0146;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	207844	207954	.	-	0	ID=cds-ML0146;Parent=gene-ML0146;Note=Possible pseudogene of M. tuberculosis orthologue Rv0941c (Best blastx score 108);gbkey=CDS;gene=ML0146;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	208823	208975	.	+	.	ID=id-AL450380.1:208823..208975;Note=153 bp repeat%2C 95%25 identical to region 2409794..2409946;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	208911	209279	.	+	.	ID=gene-ML0147;Name=ML0147;gbkey=Gene;gene=ML0147;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	208911	209279	.	+	0	ID=cds-ML0147;Parent=gene-ML0147;gbkey=CDS;gene=ML0147;pseudo=true;transl_table=11
AL450380.1	EMBL	sequence_feature	208911	209192	.	+	.	ID=id-ML0147;Note=Pfam match to entry PF00934 PE%2C PE family%2C score 116.70%2C E-value 4.4e-31;gbkey=misc_feature;gene=ML0147;pseudo=true
AL450380.1	EMBL	pseudogene	209823	210314	.	+	.	ID=gene-ML0148;Name=ML0148;gbkey=Gene;gene=ML0148;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	209823	210314	.	+	0	ID=cds-ML0148;Parent=gene-ML0148;Note=Possible pseudogene of M. tuberculosis orthologue Rv0944 (Best blastx score 261);gbkey=CDS;gene=ML0148;product=possible formamidopyrimidine-DNA glycosylase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	210338	211058	.	+	.	ID=gene-ML0149;Name=ML0149;gbkey=Gene;gene=ML0149;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	210338	211058	.	+	0	ID=cds-ML0149;Parent=gene-ML0149;Note=Possible pseudogene of M. tuberculosis orthologue Rv0945 (Best blastx score 196);gbkey=CDS;gene=ML0149;product=ketoacyl reductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	211150	212814	.	-	.	ID=gene-pgi;Name=pgi;gbkey=Gene;gene=pgi;gene_biotype=protein_coding;gene_synonym=ML0150
AL450380.1	EMBL	CDS	211150	212814	.	-	0	ID=cds-CAC29658.1;Parent=gene-pgi;Dbxref=GOA:Q9CD75,InterPro:IPR001672,InterPro:IPR018189,InterPro:IPR023096,NCBI_GP:CAC29658.1;Name=CAC29658.1;Note=Similar to M. tuberculosis Rv0946c%2C pgi%2C glucose-6-phosphate isomerase%2C SW:G6PI_MYCTU (P77895) (553 aa)%3B Fasta score E(): 0%2C 85.5%25 identity in 552 aa overlap and Mycobacterium smegmatis pgi%2C glucose-6-phosphate isomerase%2C SW:G6PI_MYCSM (P96803) (442 aa)%3B Fasta score E(): 0%2C 84.1%25 identity in 440 aa overlap. Contains Pfam match to entry PF00342 PGI%2C Phosphoglucose isomerase. Contains PS00765 Phosphoglucose isomerase signature 1. Contains PS00174 Phosphoglucose isomerase signature 2.;gbkey=CDS;gene=pgi;product=glucose-6-phosphate isomerase;protein_id=CAC29658.1;transl_table=11
AL450380.1	EMBL	sequence_feature	211186	212652	.	-	.	ID=id-pgi;Note=Pfam match to entry PF00342 PGI%2C Phosphoglucose isomerase%2C score 794.70%2C E-value 3.5e-235;gbkey=misc_feature;gene=pgi
AL450380.1	EMBL	sequence_feature	211270	211323	.	-	.	ID=id-pgi-2;Note=PS00174 Phosphoglucose isomerase signature 2;gbkey=misc_feature;gene=pgi
AL450380.1	EMBL	sequence_feature	211972	212013	.	-	.	ID=id-pgi-3;Note=PS00765 Phosphoglucose isomerase signature 1;gbkey=misc_feature;gene=pgi
AL450380.1	EMBL	gene	213175	213492	.	-	.	ID=gene-ML0151;Name=ML0151;gbkey=Gene;gene=ML0151;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	213175	213492	.	-	0	ID=cds-CAC29659.1;Parent=gene-ML0151;Dbxref=GOA:Q9CD74,InterPro:IPR002701,InterPro:IPR010958,InterPro:IPR020822,UniProtKB/TrEMBL:Q9CD74,NCBI_GP:CAC29659.1;Name=CAC29659.1;Note=Similar to M. tuberculosis Rv0948c%2C hypothetical protein%2C SW:Y948_MYCTU (P71562) (105 aa)%3B Fasta score E(): 1.9e-32%2C 83.8%25 identity in 105 aa overlap. Also similar to Streptomyces coelicolor SCD63.16C%2C hypothetical protein%2C TR:CAB82023 (EMBL:AL161755) (110 aa)%3B Fasta score E(): 3.9e-06%2C 44.4%25 identity in 72 aa overlap.;gbkey=CDS;gene=ML0151;product=conserved hypothetical protein;protein_id=CAC29659.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	213504	213507	.	-	.	ID=id-AL450380.1:213504..213507;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	214001	214189	.	+	.	ID=gene-ML0152;Name=ML0152;gbkey=Gene;gene=ML0152;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	214001	214189	.	+	0	ID=cds-CAC29660.1;Parent=gene-ML0152;Dbxref=UniProtKB/TrEMBL:Q9CD73,NCBI_GP:CAC29660.1;Name=CAC29660.1;Note=Improbable CDS suggested by GC frameplot. Possibly the remains of a disrupted gene.;gbkey=CDS;gene=ML0152;product=hypothetical protein;protein_id=CAC29660.1;transl_table=11
AL450380.1	EMBL	gene	214272	216608	.	+	.	ID=gene-uvrD;Name=uvrD;gbkey=Gene;gene=uvrD;gene_biotype=protein_coding;gene_synonym=ML0153
AL450380.1	EMBL	CDS	214272	216608	.	+	0	ID=cds-CAC29661.1;Parent=gene-uvrD;Dbxref=GOA:Q9CD72,InterPro:IPR000212,InterPro:IPR013986,InterPro:IPR014016,InterPro:IPR014017,InterPro:IPR027417,NCBI_GP:CAC29661.1;Name=CAC29661.1;Note=Similar to M. tuberculosis Rv0949%2C uvrD%2C putative DNA-dependent ATPase I and helicase II%2C TR:P71561 (EMBL:AL123456) (771 aa)%3B Fasta score E(): 0%2C 81.4%25 identity in 780 aa overlap. Similar to many DNA helicases e.g. Bacillus stearothermophilus pcrA%2C ATP-dependent helicase%2C SW:PCRA_BACST (P56255) (724 aa)%3B Fasta score E(): 0%2C 43.8%25 identity in 774 aa overlap. Contains Pfam match to entry PF00580 UvrD-helicase%2C UvrD/REP helicase. Contains PS00017 ATP/GTP-binding site motif A (P-loop).%3B~Similar to ML0637;gbkey=CDS;gene=uvrD;product=putative ATP-dependent DNA helicase;protein_id=CAC29661.1;transl_table=11
AL450380.1	EMBL	sequence_feature	214335	215804	.	+	.	ID=id-uvrD;Note=Pfam match to entry PF00580 UvrD-helicase%2C UvrD/REP helicase%2C score 416.10%2C E-value 3.4e-121;gbkey=misc_feature;gene=uvrD
AL450380.1	EMBL	sequence_feature	214389	214412	.	+	.	ID=id-uvrD-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=uvrD
AL450380.1	EMBL	gene	217160	218161	.	-	.	ID=gene-ML0154;Name=ML0154;gbkey=Gene;gene=ML0154;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	217160	218161	.	-	0	ID=cds-CAC29662.1;Parent=gene-ML0154;Dbxref=InterPro:IPR011055,InterPro:IPR016047,UniProtKB/TrEMBL:Q9CD71,NCBI_GP:CAC29662.1;Name=CAC29662.1;Note=Similar to M. tuberculosis Rv0950c%2C hypothetical protein%2C TR:P71560 (EMBL:AL123456) (332 aa)%3B Fasta score E(): 0%2C 71.0%25 identity in 331 aa overlap. Shows weaker similarity to many bacterial hypothetical proteins which contains a Peptidase family M23/M37 domain. Previously sequenced as TR:Q9Z5H9 (EMBL:AL035500) (343 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 333 aa overlap. Contains Pfam match to entry PF01551 Peptidase_M37%2C Peptidase family M23/M37.;gbkey=CDS;gene=ML0154;product=conserved hypothetical protein;protein_id=CAC29662.1;transl_table=11
AL450380.1	EMBL	sequence_feature	217202	217453	.	-	.	ID=id-ML0154;Note=Pfam match to entry PF01551 Peptidase_M37%2C Peptidase family M23/M37%2C score 144.20%2C E-value 2.2e-39;gbkey=misc_feature;gene=ML0154
AL450380.1	EMBL	gene	218458	219639	.	+	.	ID=gene-sucC;Name=sucC;gbkey=Gene;gene=sucC;gene_biotype=protein_coding;gene_synonym=ML0155
AL450380.1	EMBL	CDS	218458	219639	.	+	0	ID=cds-CAC29663.1;Parent=gene-sucC;Dbxref=GOA:Q9Z5H8,InterPro:IPR005809,InterPro:IPR005811,InterPro:IPR011761,InterPro:IPR013650,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016102,InterPro:IPR017866,NCBI_GP:CAC29663.1;Name=CAC29663.1;Note=Similar to M. tuberculosis Rv0951%2C sucC%2C putative succinyl-CoA synthase [beta] chain%2C SW:SUCC_MYCTU (P71559) (387 aa)%3B Fasta score E(): 0%2C 86.7%25 identity in 391 aa overlap. Similar to many e.g. Thermus aquaticus sucC%2C succinyl-CoA synthase [beta] chain%2C SW:SUCC_THEFL (P25126) (378 aa)%3B Fasta score E(): 0%2C 48.7%25 identity in 384 aa overlap. Previously sequenced as TR:Q9Z5H8 (EMBL:AL035500) (393 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 393 aa overlap. Contains Pfam match to entry PF00549 ligase-CoA%2C CoA-ligases. Contains Pfam match to entry PF02222 ATP-grasp%2C ATP-grasp domain. Contains PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3.;gbkey=CDS;gene=sucC;product=succinyl-CoA synthase [beta] chain;protein_id=CAC29663.1;transl_table=11
AL450380.1	EMBL	sequence_feature	218542	219027	.	+	.	ID=id-sucC;Note=Pfam match to entry PF02222 ATP-grasp%2C ATP-grasp domain%2C score 164.40%2C E-value 1.9e-45;gbkey=misc_feature;gene=sucC
AL450380.1	EMBL	sequence_feature	219187	219564	.	+	.	ID=id-sucC-2;Note=Pfam match to entry PF00549 ligase-CoA%2C CoA-ligases%2C score 129.00%2C E-value 6.8e-35;gbkey=misc_feature;gene=sucC
AL450380.1	EMBL	sequence_feature	219220	219294	.	+	.	ID=id-sucC-3;Note=PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3;gbkey=misc_feature;gene=sucC
AL450380.1	EMBL	ribosome_entry_site	219639	219644	.	+	.	ID=id-AL450380.1:219639..219644;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	219659	220561	.	+	.	ID=gene-sucD;Name=sucD;gbkey=Gene;gene=sucD;gene_biotype=protein_coding;gene_synonym=ML0156
AL450380.1	EMBL	CDS	219659	220561	.	+	0	ID=cds-CAC29664.1;Parent=gene-sucD;Dbxref=GOA:Q7AQN6,InterPro:IPR003781,InterPro:IPR005810,InterPro:IPR005811,InterPro:IPR016040,InterPro:IPR016102,InterPro:IPR017440,UniProtKB/TrEMBL:Q7AQN6,NCBI_GP:CAC29664.1;Name=CAC29664.1;Note=Similar to M. tuberculosis Rv0952%2C sucD%2C putative succinyl-CoA synthase [alpha] chain%2C SW:SUCD_MYCTU (P71558) (303 aa)%3B Fasta score E(): 0%2C 86.3%25 identity in 300 aa overlap. Similar to many e.g. Escherichia coli sucD%2C succinyl-CoA synthase [alpha] chain%2C SW:SUCD_ECOLI (P07459) (288 aa)%3B Fasta score E(): 0%2C 50.3%25 identity in 298 aa overlap. Previously sequenced as TR:Q9S372 (EMBL:AL035500) (300 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 300 aa overlap. Contains Pfam match to entry PF00549 ligase-CoA%2C CoA-ligases. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. Contains PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1.;gbkey=CDS;gene=sucD;product=succinyl-CoA synthase [alpha] chain;protein_id=CAC29664.1;transl_table=11
AL450380.1	EMBL	sequence_feature	220088	220525	.	+	.	ID=id-sucD;Note=Pfam match to entry PF00549 ligase-CoA%2C CoA-ligases%2C score 115.90%2C E-value 3.2e-31;gbkey=misc_feature;gene=sucD
AL450380.1	EMBL	sequence_feature	220145	220228	.	+	.	ID=id-sucD-2;Note=PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1;gbkey=misc_feature;gene=sucD
AL450380.1	EMBL	sequence_feature	220391	220432	.	+	.	ID=id-sucD-3;Note=PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site;gbkey=misc_feature;gene=sucD
AL450380.1	EMBL	sequence_feature	220490	220513	.	+	.	ID=id-sucD-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=sucD
AL450380.1	EMBL	pseudogene	220591	221452	.	-	.	ID=gene-ML0157;Name=ML0157;gbkey=Gene;gene=ML0157;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	220591	221452	.	-	0	ID=cds-ML0157;Parent=gene-ML0157;Note=Possible pseudogene of M. tuberculosis orthologue Rv0953c (Best blastx score 518);gbkey=CDS;gene=ML0157;product=similar to alkanal monooxygenase beta chains (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	221657	222601	.	+	.	ID=gene-ML0158;Name=ML0158;gbkey=Gene;gene=ML0158;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	221657	222601	.	+	0	ID=cds-CAC29666.1;Parent=gene-ML0158;Dbxref=UniProtKB/TrEMBL:Q9CD70,NCBI_GP:CAC29666.1;Name=CAC29666.1;Note=Similar to M. tuberculosis Rv0954%2C 34 kDa antigenic protein homologue%2C SW:34KD_MYCTU (P71556) (303 aa)%3B Fasta score E(): 0%2C 55.8%25 identity in 312 aa overlap and to Mycobacterium paratuberculosis 34 kDa antigenic protein%2C SW:34KD_MYCPA (Q04959) (298 aa)%3B Fasta score E(): 0%2C 61.7%25 identity in 311 aa overlap. Previously sequenced as TR:O87894 (EMBL:U82111) (336 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 314 aa overlap. Contains hydrophobic%2C membrane-spanning regions.;gbkey=CDS;gene=ML0158;product=34 kDa antigen;protein_id=CAC29666.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	222637	222640	.	+	.	ID=id-AL450380.1:222637..222640;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	222650	223942	.	+	.	ID=gene-ML0159;Name=ML0159;gbkey=Gene;gene=ML0159;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	222650	223942	.	+	0	ID=cds-CAC29667.1;Parent=gene-ML0159;Dbxref=UniProtKB/TrEMBL:Q7AQN5,NCBI_GP:CAC29667.1;Name=CAC29667.1;Note=Similar to M. tuberculosis Rv0955%2C possible membrane protein%2C SW:Y955_MYCTU (P71555) (455 aa)%3B Fasta score E(): 0%2C 75.9%25 identity in 419 aa overlap. Previously sequenced as TR:Q9Z5H7 (EMBL:AL035500) (430 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 430 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0159;product=putative membrane protein;protein_id=CAC29667.1;transl_table=11
AL450380.1	EMBL	gene	223972	224619	.	+	.	ID=gene-purN;Name=purN;gbkey=Gene;gene=purN;gene_biotype=protein_coding;gene_synonym=ML0160
AL450380.1	EMBL	CDS	223972	224619	.	+	0	ID=cds-CAC29668.1;Parent=gene-purN;Dbxref=GOA:Q7AQN4,InterPro:IPR002376,InterPro:IPR004607,UniProtKB/TrEMBL:Q7AQN4,NCBI_GP:CAC29668.1;Name=CAC29668.1;Note=Similar to M. tuberculosis Rv0956%2C purN%2C putative phosphoribosylglycinamide formyltransferase%2C TR:P71554 (EMBL:AL123456) (215 aa)%3B Fasta score E(): 0%2C 79.4%25 identity in 214 aa overlap. Similar to many e.g. Mycobacterium avium subsp. paratuberculosis purN%2C phosphoribosylglycinamide formyltransferase I%2C TR:Q9RAJ6 (EMBL:AF191543) (209 aa)%3B Fasta score E(): 0%2C 81.6%25 identity in 207 aa overlap. Previously sequenced as TR:Q9Z5H6 (EMBL:AL035500) (215 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 215 aa overlap. Contains Pfam match to entry PF00551 formyl_transf%2C Formyl transferase.;gbkey=CDS;gene=purN;product=putative phosphoribosylglycinamide formyltransferase;protein_id=CAC29668.1;transl_table=11
AL450380.1	EMBL	sequence_feature	224008	224544	.	+	.	ID=id-purN;Note=Pfam match to entry PF00551 formyl_transf%2C Formyl transferase%2C score 156.30%2C E-value 6.8e-44;gbkey=misc_feature;gene=purN
AL450380.1	EMBL	gene	224616	226199	.	+	.	ID=gene-purH;Name=purH;gbkey=Gene;gene=purH;gene_biotype=protein_coding;gene_synonym=ML0161
AL450380.1	EMBL	CDS	224616	226199	.	+	0	ID=cds-CAC29669.1;Parent=gene-purH;Dbxref=GOA:Q9Z5H5,InterPro:IPR002695,InterPro:IPR011607,InterPro:IPR016193,InterPro:IPR024051,NCBI_GP:CAC29669.1;Name=CAC29669.1;Note=Similar to M. tuberculosis Rv0957%2C purH%2C putative phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase%2C SW:PUR9_MYCTU (P71553) (523 aa)%3B Fasta score E(): 0%2C 88.1%25 identity in 520 aa overlap. Similar to many e.g. Bacillus subtilis purN%2C phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase%2C SW:PUR9_BACSU (P12048) (512 aa)%3B Fasta score E(): 0%2C 43.2%25 identity in 519 aa overlap. Previously sequenced as SW:PUR9_MYCLE (Q9Z5H5) (527 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 527 aa overlap. Contains Pfam match to entry PF01808 AICARFT_IMPCHas%2C AICARFT/IMPCHase bienzyme.;gbkey=CDS;gene=purH;product=putative phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase;protein_id=CAC29669.1;transl_table=11
AL450380.1	EMBL	sequence_feature	225048	225992	.	+	.	ID=id-purH;Note=Pfam match to entry PF01808 AICARFT_IMPCHas%2C AICARFT/IMPCHase bienzyme%2C score 585.50%2C E-value 3.2e-172;gbkey=misc_feature;gene=purH
AL450380.1	EMBL	gene	227008	227286	.	-	.	ID=gene-ML0162;Name=ML0162;gbkey=Gene;gene=ML0162;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	227008	227286	.	-	0	ID=cds-CAC29670.1;Parent=gene-ML0162;Dbxref=UniProtKB/TrEMBL:Q7AQN3,NCBI_GP:CAC29670.1;Name=CAC29670.1;Note=Improbable CDS suggested by GC frameplot. Possibly the remains of a disrupted gene. Previously sequenced as TR:Q9Z5H3 (EMBL:AL035500) (92 aa)%3B Fasta score E(): 0%2C 98.9%25 identity in 92 aa overlap.;gbkey=CDS;gene=ML0162;product=hypothetical protein;protein_id=CAC29670.1;transl_table=11
AL450380.1	EMBL	pseudogene	228661	229628	.	+	.	ID=gene-ML0163;Name=ML0163;gbkey=Gene;gene=ML0163;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	228661	229628	.	+	0	ID=cds-ML0163;Parent=gene-ML0163;Note=Possible pseudogene of M. tuberculosis orthologue Rv0959 (Best blastx score 266);gbkey=CDS;gene=ML0163;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	229629	230493	.	+	.	ID=gene-fadE13;Name=fadE13;gbkey=Gene;gene=fadE13;gene_biotype=pseudogene;gene_synonym=ML0164;pseudo=true
AL450380.1	EMBL	CDS	229629	230493	.	+	0	ID=cds-fadE13;Parent=gene-fadE13;Note=Possible pseudogene of M. tuberculosis orthologue fadE13 (Best blastx score 280);gbkey=CDS;gene=fadE13;product=acyl-CoA dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	230546	231663	.	+	.	ID=gene-accD2;Name=accD2;gbkey=Gene;gene=accD2;gene_biotype=pseudogene;gene_synonym=ML0165;pseudo=true
AL450380.1	EMBL	CDS	230546	231663	.	+	0	ID=cds-accD2;Parent=gene-accD2;Note=Possible pseudogene of M. tuberculosis orthologue accD2 (Best blastx score 451);gbkey=CDS;gene=accD2;product=acetyl/propionyl-CoA carboxylase%2C [beta] subunit (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	231672	233398	.	+	.	ID=gene-accA2;Name=accA2;gbkey=Gene;gene=accA2;gene_biotype=pseudogene;gene_synonym=ML0166;pseudo=true
AL450380.1	EMBL	CDS	231672	233398	.	+	0	ID=cds-accA2;Parent=gene-accA2;Note=Possible pseudogene of M. tuberculosis orthologue accA2 (Best blastx score 317);gbkey=CDS;gene=accA2;product=acetyl/propionyl-CoA carboxylase%2C [alpha] subunit (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	233449	234077	.	+	.	ID=gene-fadE12;Name=fadE12;gbkey=Gene;gene=fadE12;gene_biotype=pseudogene;gene_synonym=ML0167;pseudo=true
AL450380.1	EMBL	CDS	233449	234077	.	+	0	ID=cds-fadE12;Parent=gene-fadE12;Note=Possible pseudogene of M. tuberculosis orthologue fadE12 (Best blastx score 396);gbkey=CDS;gene=fadE12;product=acyl-CoA dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	234124	234820	.	+	.	ID=gene-echA7;Name=echA7;gbkey=Gene;gene=echA7;gene_biotype=pseudogene;gene_synonym=ML0168;pseudo=true
AL450380.1	EMBL	CDS	234124	234820	.	+	0	ID=cds-echA7;Parent=gene-echA7;Note=Possible pseudogene of M. tuberculosis orthologue echA7 (Best blastx score 174);gbkey=CDS;gene=echA7;product=enoyl-CoA hydratase/isomerase superfamily (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	234932	235534	.	+	.	ID=gene-ML0169;Name=ML0169;gbkey=Gene;gene=ML0169;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	234932	235534	.	+	0	ID=cds-CAC29677.1;Parent=gene-ML0169;Dbxref=InterPro:IPR012551,UniProtKB/TrEMBL:Q7AQN2,NCBI_GP:CAC29677.1;Name=CAC29677.1;Note=Similar to M. tuberculosis Rv0966c%2C hypothetical protein%2C SW:Y966_MYCTU (P71544) (230 aa)%3B Fasta score E(): 0%2C 79.5%25 identity in 200 aa overlap. Also similar to Streptomyces coelicolor SCE6.30C%2C hypothetical protein%2C TR:CAB88834 (EMBL:AL353832) (277 aa)%3B Fasta score E(): 3.3e-20%2C 41.0%25 identity in 205 aa overlap. Previously sequenced as TR:Q9Z5H1 (EMBL:AL035500) (200 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 200 aa overlap.;gbkey=CDS;gene=ML0169;product=conserved hypothetical protein;protein_id=CAC29677.1;transl_table=11
AL450380.1	EMBL	pseudogene	235667	235822	.	+	.	ID=gene-ML0170;Name=ML0170;gbkey=Gene;gene=ML0170;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	235667	235822	.	+	0	ID=cds-ML0170;Parent=gene-ML0170;Note=Possible pseudogene of M. tuberculosis orthologue Rv0965c (Best blastx score 115);gbkey=CDS;gene=ML0170;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	236614	237352	.	+	.	ID=gene-ML0171;Name=ML0171;gbkey=Gene;gene=ML0171;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	236614	237352	.	+	0	ID=cds-ML0171;Parent=gene-ML0171;Note=Possible pseudogene of M. tuberculosis orthologue Rv0963c (Best blastx score 311);gbkey=CDS;gene=ML0171;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	237609	238202	.	+	.	ID=gene-ML0172;Name=ML0172;gbkey=Gene;gene=ML0172;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	237609	238202	.	+	0	ID=cds-ML0172;Parent=gene-ML0172;Note=Possible pseudogene of M. tuberculosis orthologue Rv0962c (Best blastx score 310);gbkey=CDS;gene=ML0172;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	238509	239454	.	+	.	ID=id-AL450380.1:238509..239454;Note=REPLEP region 1%2C 3'-end most similar to REPLEP 4%2C 5 and 6;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	238509	238529	.	+	.	ID=id-AL450380.1:238509..238529;Note=21 bp repeat found at 5'-ends of REPLEP copies 1%2C 2%2C 6 %26 11.;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	238530	239409	.	+	.	ID=id-AL450380.1:238530..239409;Note=Dispersed repeat%2C REPLEP%2C copy 1%2C shows 55%25 ID to self on complement;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	239410	239454	.	+	.	ID=id-AL450380.1:239410..239454;Note=45 bp REPLEP-associated sequence;gbkey=repeat_region
AL450380.1	EMBL	gene	240237	240410	.	+	.	ID=gene-rpmF;Name=rpmF;gbkey=Gene;gene=rpmF;gene_biotype=protein_coding;gene_synonym=ML0173
AL450380.1	EMBL	CDS	240237	240410	.	+	0	ID=cds-CAC29681.1;Parent=gene-rpmF;Dbxref=GOA:Q9CD69,InterPro:IPR002677,InterPro:IPR011332,NCBI_GP:CAC29681.1;Name=CAC29681.1;Note=probable ribosomal protein L32%2C rpmF%2Csimilar to many e.g. tr|Q9RL50|Q9RL50 PROBABLE 50S RIBOSOMAL PROTEIN (56 aa) E(): 1.5e-09%3B 63.462%25 identity in 52 aa overlap;gbkey=CDS;gene=rpmF;product=CAC29681.1;protein_id=CAC29681.1;transl_table=11
AL450380.1	EMBL	gene	240531	241217	.	+	.	ID=gene-ML0174;Name=ML0174;gbkey=Gene;gene=ML0174;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	240531	241217	.	+	0	ID=cds-CAC29682.1;Parent=gene-ML0174;Dbxref=GOA:Q9CD68,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,NCBI_GP:CAC29682.1;Name=CAC29682.1;Note=Similar to several putative two-component response regulators from M. tuberculosis e.g. Rv0981%2C putative two-component response regulator%2C TR:O53894 (EMBL:AL123456) (230 aa)%3B Fasta score E(): 0%2C 94.3%25 identity in 228 aa overlap. Similar to many others e.g. Pseudomonas syringae copR%2C transcriptional activator protein involved in activation of copper resistance%2C SW:COPR_PSESM (Q02540) (227 aa)%3B Fasta score E(): 6.4e-32%2C 43.9%25 identity in 223 aa overlap. Previously sequenced as TR:Q9Z5G8 (EMBL:AL035500) (253 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 228 aa overlap. Contains Pfam match to entry PF00486 trans_reg_C%2C Transcriptional regulatory protein%2C C terminal. Contains Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain.%3B~Similar to ML0773%2C ML1286%2C ML2123 and ML2439;gbkey=CDS;gene=ML0174;product=putative two-component response regulator;protein_id=CAC29682.1;transl_table=11
AL450380.1	EMBL	sequence_feature	240531	240866	.	+	.	ID=id-ML0174;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 158.60%2C E-value 1.1e-43;gbkey=misc_feature;gene=ML0174
AL450380.1	EMBL	sequence_feature	240975	241190	.	+	.	ID=id-ML0174-2;Note=Pfam match to entry PF00486 trans_reg_C%2C Transcriptional regulatory protein%2C C terminal%2C score 85.90%2C E-value 2.2e-24;gbkey=misc_feature;gene=ML0174
AL450380.1	EMBL	ribosome_entry_site	241199	241205	.	+	.	ID=id-ML0174-3;Parent=gene-ML0174;Note=possible RBS;gbkey=regulatory;gene=ML0174;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	241217	242776	.	+	.	ID=gene-ML0175;Name=ML0175;gbkey=Gene;gene=ML0175;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	241217	242776	.	+	0	ID=cds-CAC29683.1;Parent=gene-ML0175;Dbxref=GOA:Q9Z5G7,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,NCBI_GP:CAC29683.1;Name=CAC29683.1;Note=Similar to several putative two-component system sensor kinases from M. tuberculosis e.g. Rv0982%2C putative two-component system sensor kinase%2C TR:O53895 (EMBL:AL123456) (504 aa)%3B Fasta score E(): 0%2C 81.0%25 identity in 521 aa overlap. Similar to many others e.g. Pseudomonas syringae copS%2C sensor protein involved in activation of copper resistance%2C SW:COPS_PSESM (Q02541) (487 aa)%3B Fasta score E(): 1.2e-18%2C 27.9%25 identity in 427 aa overlap. Previously sequenced as TR:Q9Z5G7 (EMBL:AL035500) (519 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 519 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions. Contains Pfam match to entry PF00672 DUF5%2C Domain found in bacterial signal proteins. Contains Pfam match to entry PF00512 signal%2C Histidine kinase. Contains PS00017 ATP/GTP-binding site motif A (P-loop).%3B~Similar to ML0774%2C ML2124 and ML2440;gbkey=CDS;gene=ML0175;product=putative two-component system sensor kinase;protein_id=CAC29683.1;transl_table=11
AL450380.1	EMBL	sequence_feature	241712	241921	.	+	.	ID=id-ML0175;Note=Pfam match to entry PF00672 DUF5%2C Domain found in bacterial signal proteins%2C score 65.20%2C E-value 1.4e-15;gbkey=misc_feature;gene=ML0175
AL450380.1	EMBL	sequence_feature	241961	242605	.	+	.	ID=id-ML0175-2;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 137.60%2C E-value 2.2e-37;gbkey=misc_feature;gene=ML0175
AL450380.1	EMBL	sequence_feature	242690	242713	.	+	.	ID=id-ML0175-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML0175
AL450380.1	EMBL	gene	243054	244202	.	+	.	ID=gene-ML0176;Name=ML0176;gbkey=Gene;gene=ML0176;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	243054	244202	.	+	0	ID=cds-CAC29684.1;Parent=gene-ML0176;Dbxref=GOA:Q9CD67,InterPro:IPR001478,InterPro:IPR001940,InterPro:IPR009003,UniProtKB/TrEMBL:Q9CD67,NCBI_GP:CAC29684.1;Name=CAC29684.1;Note=Similar to M.tuberculosis Rv0983%2C probable serine protease%2C TR:O53896 (EMBL:AL123456) (464 aa)%3B Fasta score E(): 0%2C 80.7%25 identity in 383 aa overlap and in part to M.tuberculosis htrA%2C putative serine protease%2C TR:O06291 (EMBL:AL123456) (549 aa)%3B Fasta score E(): 0%2C 41.8%25 identity in 347 aa overlap. Similar to many e.g. putative serine protease expressed in vivo by Mycobacterium avium subsp. paratuberculosis%2C TR:Q50320 (EMBL:Z23092) (361 aa)%3B Fasta score E(): 1.1e-19%2C 35.4%25 identity in 362 aa overlap. Previously sequenced as TR:Q9Z5G6 (EMBL:AL035500) (452 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 382 aa overlap. Contains a possible N-terminal signal sequence. Contains Pfam match to entry PF00595 PDZ%2C PDZ domain (Also known as DHR or GLGF).. Contains Pfam match to entry PF00089 trypsin%2C Trypsin.%3B~Similar to ML1078 and ML2659;gbkey=CDS;gene=ML0176;product=possible secreted serine protease;protein_id=CAC29684.1;transl_table=11
AL450380.1	EMBL	sequence_feature	243342	243899	.	+	.	ID=id-ML0176;Note=Pfam match to entry PF00089 trypsin%2C Trypsin%2C score 50.90%2C E-value 2.7e-15;gbkey=misc_feature;gene=ML0176
AL450380.1	EMBL	sequence_feature	243909	244151	.	+	.	ID=id-ML0176-2;Note=Pfam match to entry PF00595 PDZ%2C PDZ domain (Also known as DHR or GLGF).%2C score 16.80%2C E-value 0.025;gbkey=misc_feature;gene=ML0176
AL450380.1	EMBL	gene	244225	244770	.	+	.	ID=gene-moaB;Name=moaB;gbkey=Gene;gene=moaB;gene_biotype=protein_coding;gene_synonym=ML0177
AL450380.1	EMBL	CDS	244225	244770	.	+	0	ID=cds-CAC29685.1;Parent=gene-moaB;Dbxref=GOA:Q7AQN0,InterPro:IPR001453,InterPro:IPR020817,UniProtKB/TrEMBL:Q7AQN0,NCBI_GP:CAC29685.1;Name=CAC29685.1;Note=Similar to M.tuberculosis moaB2%2C putative molybdenum cofactor biosynthesis protein%2C TR:O53897 (EMBL:AL123456) (181 aa)%3B Fasta score E(): 0%2C 92.7%25 identity in 179 aa overlap. Similar to many e.g. to the C-terminal halves of Arabidopsis thaliana cnx1%2C multifunctional two-domain protein involved in molybdenum cofactor biosynthesis%2C SW:CNX1_ARATH (Q39054) (670 aa)%3B Fasta score E(): 7.7e-10%2C 36.4%25 identity in 187 aa overlap and Synechococcus sp. (strain PCC 7942) moaCB%2C molybdenum cofactor biosynthesis protein%2C SW:MOCB_SYNP7 (Q56208) (319 aa)%3B Fasta score E(): 1.3e-09%2C 35.9%25 identity in 142 aa overlap. Previously sequenced as TR:Q9Z5G5 (EMBL:AL035500) (181 aa)%3B Fasta score E(): 0%2C 99.4%25 identity in 181 aa overlap.;gbkey=CDS;gene=moaB;product=putative molybdenum cofactor biosynthesis protein;protein_id=CAC29685.1;transl_table=11
AL450380.1	EMBL	gene	244787	245251	.	-	.	ID=gene-mscL;Name=mscL;gbkey=Gene;gene=mscL;gene_biotype=protein_coding;gene_synonym=ML0178
AL450380.1	EMBL	CDS	244787	245251	.	-	0	ID=cds-CAC29686.1;Parent=gene-mscL;Dbxref=GOA:Q9Z5G4,InterPro:IPR001185,InterPro:IPR019823,InterPro:IPR029027,NCBI_GP:CAC29686.1;Name=CAC29686.1;Note=Similar to M.tuberculosis mscL%2C Rv0985c%2C putative mechanosensitive channel protein%2C SW:MSCL_MYCTU (O53898) (151 aa)%3B Fasta score E(): 0%2C 71.0%25 identity in 155 aa overlap. Similar to many e.g. Escherichia coli mscL%2C large-conductance mechanosensitive channel%2C SW:MSCL_ECOLI (P23867) (136 aa)%3B Fasta score E(): 1.3e-07%2C 32.1%25 identity in 134 aa overlap. Previously sequenced as SW:MSCL_MYCLE (Q9Z5G4) (154 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 154 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions. Contains Pfam match to entry PF01741 MscL%2C Large-conductance mechanosensitive channel%2C MscL. Contains PS01327 Large-conductance mechanosensitive channels mscL family signature.;gbkey=CDS;gene=mscL;product=putative mechanosensitive channel protein;protein_id=CAC29686.1;transl_table=11
AL450380.1	EMBL	sequence_feature	244868	245191	.	-	.	ID=id-mscL;Note=Pfam match to entry PF01741 MscL%2C Large-conductance mechanosensitive channel%2C MscL%2C score 91.50%2C E-value 1.6e-23;gbkey=misc_feature;gene=mscL
AL450380.1	EMBL	sequence_feature	245180	245221	.	-	.	ID=id-mscL-2;Note=PS01327 Large-conductance mechanosensitive channels mscL family signature;gbkey=misc_feature;gene=mscL
AL450380.1	EMBL	ribosome_entry_site	245258	245263	.	-	.	ID=id-AL450380.1:245258..245263;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	245324	245983	.	-	.	ID=gene-ML0179;Name=ML0179;gbkey=Gene;gene=ML0179;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	245324	245983	.	-	0	ID=cds-ML0179;Parent=gene-ML0179;Note=Possible pseudogene of M. tuberculosis orthologue Rv0990c (Best blastx score 338);gbkey=CDS;gene=ML0179;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	246049	246348	.	-	.	ID=gene-ML0180;Name=ML0180;gbkey=Gene;gene=ML0180;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	246049	246348	.	-	0	ID=cds-CAC29688.1;Parent=gene-ML0180;Dbxref=InterPro:IPR013429,UniProtKB/TrEMBL:Q9CD66,NCBI_GP:CAC29688.1;Name=CAC29688.1;Note=Similar to M.tuberculosis Rv0991c%2C hypothetical protein with Ser-rich C-terminus%2C TR:O05574 (EMBL:AL123456) (110 aa)%3B Fasta score E(): 1.1e-23%2C 78.5%25 identity in 93 aa overlap. Similar to other bacterial Ser-rich hypothetical proteins e.g. Streptomyces coelicolor SCE22.04%2C hypothetical protein%2C TR:CAB90971 (EMBL:AL355832) (110 aa)%3B Fasta score E(): 2.6e-15%2C 54.5%25 identity in 99 aa overlap. Previously sequenced as TR:Q9Z5G3 (EMBL:AL035500) (120 aa)%3B Fasta score E(): 1.1e-32%2C 100.0%25 identity in 99 aa overlap.;gbkey=CDS;gene=ML0180;product=conserved hypothetical protein. Ser-rich C-terminus;protein_id=CAC29688.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	246354	246358	.	-	.	ID=id-AL450380.1:246354..246358;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	246423	247016	.	-	.	ID=gene-ML0181;Name=ML0181;gbkey=Gene;gene=ML0181;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	246423	247016	.	-	0	ID=cds-CAC29689.1;Parent=gene-ML0181;Dbxref=InterPro:IPR002698,InterPro:IPR024185,UniProtKB/TrEMBL:Q7AQM9,NCBI_GP:CAC29689.1;Name=CAC29689.1;Note=Similar to M.tuberculosis Rv0992c%2C conserved hypothetical protein%2C TR:O05575 (EMBL:AL123456) (197 aa)%3B Fasta score E(): 0%2C 72.6%25 identity in 197 aa overlap. Similar to many hypothetical proteins and shows weak similarity to methenyltetrahydrofolate synthetases e.g. human mthfs%2C 5-formyltetrahydrofolate cyclo-ligase%2C SW:FTHC_HUMAN (P49914) (202 aa)%3B Fasta score E(): 7e-06%2C 23.3%25 identity in 189 aa overlap. Previously sequenced as TR:Q9Z5G2 (EMBL:AL035500) (197 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 197 aa overlap. Contains Pfam match to entry PF01812 5-FTHF_cyc-lig%2C 5-formyltetrahydrofolate cyclo-ligase.;gbkey=CDS;gene=ML0181;product=conserved hypothetical protein;protein_id=CAC29689.1;transl_table=11
AL450380.1	EMBL	sequence_feature	246459	246971	.	-	.	ID=id-ML0181;Note=Pfam match to entry PF01812 5-FTHF_cyc-lig%2C 5-formyltetrahydrofolate cyclo-ligase%2C score 169.90%2C E-value 4.1e-47;gbkey=misc_feature;gene=ML0181
AL450380.1	EMBL	ribosome_entry_site	247034	247037	.	-	.	ID=id-AL450380.1:247034..247037;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	247094	248014	.	+	.	ID=gene-galU;Name=galU;gbkey=Gene;gene=galU;gene_biotype=protein_coding;gene_synonym=ML0182
AL450380.1	EMBL	CDS	247094	248014	.	+	0	ID=cds-CAC29690.1;Parent=gene-galU;Dbxref=GOA:Q7AQM8,InterPro:IPR005835,InterPro:IPR029044,UniProtKB/TrEMBL:Q7AQM8,NCBI_GP:CAC29690.1;Name=CAC29690.1;Note=Similar to M.tuberculosis galU%2C Rv0993%2C UTP-glucose-1-phosphate uridylyltransferase%2C TR:O05576 (EMBL:AL123456) (306 aa)%3B Fasta score E(): 0%2C 89.7%25 identity in 302 aa overlap. Similar to many e.g. Escherichia coli galU%2C UTP--glucose-1-phosphate uridylyltransferase%2C SW:GALU_ECOLI (P25520) (301 aa)%3B Fasta score E(): 5.4e-33%2C 38.8%25 identity in 299 aa overlap. Previously sequenced as TR:Q9Z5G1 (EMBL:AL035500) (306 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 306 aa overlap. Contains Pfam match to entry PF00483 NTP_transferase%2C Nucleotidyl transferase.;gbkey=CDS;gene=galU;product=putative UTP-glucose-1-phosphate uridylyltransferase;protein_id=CAC29690.1;transl_table=11
AL450380.1	EMBL	sequence_feature	247133	247948	.	+	.	ID=id-galU;Note=Pfam match to entry PF00483 NTP_transferase%2C Nucleotidyl transferase%2C score 54.30%2C E-value 2.7e-12;gbkey=misc_feature;gene=galU
AL450380.1	EMBL	gene	248102	249376	.	+	.	ID=gene-moeA;Name=moeA;gbkey=Gene;gene=moeA;gene_biotype=protein_coding;gene_synonym=ML0183
AL450380.1	EMBL	CDS	248102	249376	.	+	0	ID=cds-CAC29691.1;Parent=gene-moeA;Dbxref=GOA:Q7AQM7,InterPro:IPR001453,InterPro:IPR005110,InterPro:IPR005111,InterPro:IPR020817,UniProtKB/TrEMBL:Q7AQM7,NCBI_GP:CAC29691.1;Name=CAC29691.1;Note=Similar to M.tuberculosis moeA%2C Rv0994%2C putative molybdopterin biosynthesis protein%2C SW:MOEA_MYCTU (O05577) (426 aa)%3B Fasta score E(): 0%2C 88.3%25 identity in 426 aa overlap. Similar to many e.g. Escherichia coli moeA%2C molybdopterin biosynthesis protein%2C SW:MOEA_ECOLI (P12281) (411 aa)%3B Fasta score E(): 3.3e-23%2C 31.4%25 identity in 392 aa overlap. Previously sequenced as TR:Q9Z5G0 (EMBL:AL035500) (424 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 424 aa overlap. Contains Pfam match to entry PF00994 MoCF_biosynth%2C Molybdenum cofactor biosynthesis protein.;gbkey=CDS;gene=moeA;product=putative molybdopterin biosynthesis protein;protein_id=CAC29691.1;transl_table=11
AL450380.1	EMBL	sequence_feature	248102	249361	.	+	.	ID=id-moeA;Note=Pfam match to entry PF00994 MoCF_biosynth%2C Molybdenum cofactor biosynthesis protein%2C score 551.80%2C E-value 4.7e-162;gbkey=misc_feature;gene=moeA
AL450380.1	EMBL	gene	249407	250051	.	+	.	ID=gene-rimJ;Name=rimJ;gbkey=Gene;gene=rimJ;gene_biotype=protein_coding;gene_synonym=ML0184
AL450380.1	EMBL	CDS	249407	250051	.	+	0	ID=cds-CAC29692.1;Parent=gene-rimJ;Dbxref=GOA:Q9CD65,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:Q9CD65,NCBI_GP:CAC29692.1;Name=CAC29692.1;Note=Similar to M.tuberculosis rimJ%2C Rv0995%2C possible acetyltransferase%2C TR:O05578 (EMBL:AL123456) (203 aa)%3B Fasta score E(): 0%2C 86.0%25 identity in 200 aa overlap. Similar to Escherichia coli rimJ%2C ribosomal-protein-alanine acetyltransferase%2C SW:RIMJ_ECOLI (P09454) (194 aa)%3B Fasta score E(): 9.4e-12%2C 28.0%25 identity in 189 aa overlap and to other putative acetyltransferases. Previously sequenced as TR:Q9Z5F9 (EMBL:AL035500) (218 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 214 aa overlap. Contains Pfam match to entry PF00583 Acetyltransf%2C Acetyltransferase (GNAT) family.;gbkey=CDS;gene=rimJ;product=possible acetyltransferase;protein_id=CAC29692.1;transl_table=11
AL450380.1	EMBL	sequence_feature	249482	249913	.	+	.	ID=id-rimJ;Note=Pfam match to entry PF00583 Acetyltransf%2C Acetyltransferase (GNAT) family%2C score 16.40%2C E-value 0.027;gbkey=misc_feature;gene=rimJ
AL450380.1	EMBL	ribosome_entry_site	250205	250210	.	+	.	ID=id-AL450380.1:250205..250210;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	250221	251249	.	+	.	ID=gene-ML0185;Name=ML0185;gbkey=Gene;gene=ML0185;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	250221	251249	.	+	0	ID=cds-CAC29693.1;Parent=gene-ML0185;Dbxref=UniProtKB/TrEMBL:Q7AQM6,NCBI_GP:CAC29693.1;Name=CAC29693.1;Note=Similar to M.tuberculosis Rv0996%2C hypothetical protein%2C TR:O05579 (EMBL:AL123456) (358 aa)%3B Fasta score E(): 0%2C 66.4%25 identity in 360 aa overlap. Previously sequenced as TR:Q9Z5F8 (EMBL:AL035500) (342 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 342 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0185;product=putative membrane protein;protein_id=CAC29693.1;transl_table=11
AL450380.1	EMBL	gene	251305	251377	.	+	.	ID=gene-alaV;Name=alaV;gbkey=Gene;gene=alaV;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	251305	251377	.	+	.	ID=rna-alaV;Parent=gene-alaV;Note=tRNA Ala anticodon CGC%2C Cove score 82.84;gbkey=tRNA;gene=alaV;product=tRNA-Ala
AL450380.1	EMBL	exon	251305	251377	.	+	.	ID=exon-alaV-1;Parent=rna-alaV;Note=tRNA Ala anticodon CGC%2C Cove score 82.84;gbkey=tRNA;gene=alaV;product=tRNA-Ala
AL450380.1	EMBL	pseudogene	251982	252266	.	+	.	ID=gene-ML0186;Name=ML0186;gbkey=Gene;gene=ML0186;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	251982	252266	.	+	0	ID=cds-ML0186;Parent=gene-ML0186;Note=Possible pseudogene of M. tuberculosis orthologue Rv0997 (Best blastx score 101);gbkey=CDS;gene=ML0186;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	252658	253719	.	+	.	ID=gene-ML0187;Name=ML0187;gbkey=Gene;gene=ML0187;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	252658	253719	.	+	0	ID=cds-CAC29695.1;Parent=gene-ML0187;Dbxref=GOA:Q9CD64,InterPro:IPR000182,InterPro:IPR000595,InterPro:IPR014710,InterPro:IPR016181,InterPro:IPR018488,InterPro:IPR018490,UniProtKB/TrEMBL:Q9CD64,NCBI_GP:CAC29695.1;Name=CAC29695.1;Note=Similar to M. tuberculosis Rv0998%2C hypothetical protein%2C TR:O05581 (EMBL:AL123456) (333 aa)%3B Fasta score E(): 0%2C 69.7%25 identity in 330 aa overlap. Contains Pfam match to entry PF00027 cNMP_binding%2C Cyclic nucleotide-binding domain. Contains PS00889 Cyclic nucleotide-binding domain signature 2.;gbkey=CDS;gene=ML0187;product=conserved hypothetical protein;protein_id=CAC29695.1;transl_table=11
AL450380.1	EMBL	sequence_feature	252817	253098	.	+	.	ID=id-ML0187;Note=Pfam match to entry PF00027 cNMP_binding%2C Cyclic nucleotide-binding domain%2C score 74.70%2C E-value 1.9e-18;gbkey=misc_feature;gene=ML0187
AL450380.1	EMBL	sequence_feature	252976	253029	.	+	.	ID=id-ML0187-2;Note=PS00889 Cyclic nucleotide-binding domain signature 2;gbkey=misc_feature;gene=ML0187
AL450380.1	EMBL	gene	254028	254291	.	+	.	ID=gene-ML0188;Name=ML0188;gbkey=Gene;gene=ML0188;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	254028	254291	.	+	0	ID=cds-CAC29696.1;Parent=gene-ML0188;Dbxref=UniProtKB/TrEMBL:Q9CD63,NCBI_GP:CAC29696.1;Name=CAC29696.1;Note=Unknown function. Contains PS01047 Heavy-metal-associated domain.;gbkey=CDS;gene=ML0188;product=hypothetical protein;protein_id=CAC29696.1;transl_table=11
AL450380.1	EMBL	sequence_feature	254181	254273	.	+	.	ID=id-ML0188;Note=PS01047 Heavy-metal-associated domain;gbkey=misc_feature;gene=ML0188
AL450380.1	EMBL	pseudogene	254397	255092	.	+	.	ID=gene-ML0189;Name=ML0189;gbkey=Gene;gene=ML0189;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	254397	255092	.	+	0	ID=cds-ML0189;Parent=gene-ML0189;Note=Possible pseudogene of M. tuberculosis orthologue Rv0999 (Best blastx score 400);gbkey=CDS;gene=ML0189;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	255125	255742	.	-	.	ID=gene-ML0190;Name=ML0190;gbkey=Gene;gene=ML0190;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	255125	255742	.	-	0	ID=cds-CAC29698.1;Parent=gene-ML0190;Dbxref=GOA:Q9CD62,InterPro:IPR005123,InterPro:IPR027450,UniProtKB/TrEMBL:Q9CD62,NCBI_GP:CAC29698.1;Name=CAC29698.1;Note=Unknown but orthologue of equivalent to new M. tuberculosis CDS%2C Rv1000. Very similar to conserved hypothetical proteins in various bacteria e.g. Streptomyces coelicolor%2C Xylella fastidiosa. FASTA scores: gp|AL357613|AL357613_12 Streptomyces coelicolor cosmid (210 aa) E(): 2.4e-44%3B 55.122%25 identity in 205 aa overlap%3B AE003963|AE003963_5 Xylella fastidiosa%2C E(): 9.7e-14%3B 3 9.894%25 identity in 188 aa overlap. Weak similarity to proteins involved in DNA repair;gbkey=CDS;gene=ML0190;product=conserved hypothetical protein;protein_id=CAC29698.1;transl_table=11
AL450380.1	EMBL	pseudogene	255879	256895	.	+	.	ID=gene-arcA;Name=arcA;gbkey=Gene;gene=arcA;gene_biotype=pseudogene;gene_synonym=ML0191;pseudo=true
AL450380.1	EMBL	CDS	255879	256895	.	+	0	ID=cds-arcA;Parent=gene-arcA;Note=Possible pseudogene of M. tuberculosis orthologue arcA (Best blastx score 249);gbkey=CDS;gene=arcA;product=arginine deiminase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	257035	258567	.	-	.	ID=gene-ML0192;Name=ML0192;gbkey=Gene;gene=ML0192;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	257035	258567	.	-	0	ID=cds-CAC29700.1;Parent=gene-ML0192;Dbxref=GOA:Q9CD61,InterPro:IPR003342,InterPro:IPR027005,UniProtKB/TrEMBL:Q9CD61,NCBI_GP:CAC29700.1;Name=CAC29700.1;Note=Similar to M. tuberculosis Rv1002c%2C probable membrane protein%2C TR:O05586 (EMBL:AL123456) (503 aa)%3B Fasta score E(): 0%2C 80.4%25 identity in 510 aa overlap. Also similar to Streptomyces coelicolor SCE87.05%2C putative integral membrane protein%2C TR:Q9RKD3 (EMBL:AL132674) (591 aa)%3B Fasta score E(): 0%2C 36.7%25 identity in 531 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0192;product=putative membrane protein;protein_id=CAC29700.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	258582	258586	.	-	.	ID=id-AL450380.1:258582..258586;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	258646	259491	.	+	.	ID=gene-ML0193;Name=ML0193;gbkey=Gene;gene=ML0193;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	258646	259491	.	+	0	ID=cds-CAC29701.1;Parent=gene-ML0193;Dbxref=GOA:Q9CD60,InterPro:IPR000878,InterPro:IPR008189,InterPro:IPR014776,UniProtKB/TrEMBL:Q9CD60,NCBI_GP:CAC29701.1;Name=CAC29701.1;Note=Similar to M. tuberculosis Rv1003%2C conserved hypothetical protein%2C SW:YA03_MYCTU (O05588) (285 aa)%3B Fasta score E(): 0%2C 74.0%25 identity in 277 aa overlap. Similar to many bacterial hypothetical proteins e.g. Streptomyces coelicolor SCE87.04C%2C conserved hypothetical protein%2C TR:Q9RKD4 (EMBL:AL132674) (286 aa)%3B Fasta score E(): 0%2C 50.5%25 identity in 277 aa overlap. Contains Pfam match to entry PF00590 TP_methylase%2C Tetrapyrrole (Corrin/Porphyrin) Methylases..;gbkey=CDS;gene=ML0193;product=conserved hypothetical protein;protein_id=CAC29701.1;transl_table=11
AL450380.1	EMBL	sequence_feature	258658	259269	.	+	.	ID=id-ML0193;Note=Pfam match to entry PF00590 TP_methylase%2C Tetrapyrrole (Corrin/Porphyrin) Methylases.%2C score 86.20%2C E-value 6.7e-22;gbkey=misc_feature;gene=ML0193
AL450380.1	EMBL	repeat_region	259473	260254	.	-	.	ID=id-AL450380.1:259473..260254;Note=Dispersed repeat%2C RLEP%2C copy 3;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	260507	260906	.	-	.	ID=gene-PE_PGRS;Name=PE_PGRS;gbkey=Gene;gene=PE_PGRS;gene_biotype=pseudogene;gene_synonym=ML0194;pseudo=true
AL450380.1	EMBL	CDS	260507	260906	.	-	0	ID=cds-PE_PGRS;Parent=gene-PE_PGRS;Note=Possible pseudogene of M. tuberculosis orthologue Rv3653%2C PE_PGRS (Best blastx score 94);gbkey=CDS;gene=PE_PGRS;product=PE_PGRS-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	261342	262320	.	-	.	ID=gene-ML0195;Name=ML0195;gbkey=Gene;gene=ML0195;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	261342	262320	.	-	0	ID=cds-ML0195;Parent=gene-ML0195;Note=Possible pseudogene of M. tuberculosis orthologue Rv3651 (Best blastx score 218);gbkey=CDS;gene=ML0195;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	262754	262939	.	-	.	ID=gene-PE;Name=PE;gbkey=Gene;gene=PE;gene_biotype=pseudogene;gene_synonym=ML0196;pseudo=true
AL450380.1	EMBL	CDS	262754	262939	.	-	0	ID=cds-PE;Parent=gene-PE;Note=Possible pseudogene of M. tuberculosis orthologue Rv3650%2C PE (Best blastx score 94);gbkey=CDS;gene=PE;product=PE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	263238	264560	.	-	.	ID=gene-ML0197;Name=ML0197;gbkey=Gene;gene=ML0197;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	263238	264560	.	-	0	ID=cds-ML0197;Parent=gene-ML0197;Note=Possible pseudogene of M. tuberculosis orthologue Rv3649 (Best blastx score 213);gbkey=CDS;gene=ML0197;product=ATP-dependent DNA/RNA helicase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	264881	264886	.	+	.	ID=id-AL450380.1:264881..264886;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	264898	265101	.	+	.	ID=gene-cspA;Name=cspA;gbkey=Gene;gene=cspA;gene_biotype=protein_coding;gene_synonym=ML0198
AL450380.1	EMBL	CDS	264898	265101	.	+	0	ID=cds-CAC29706.1;Parent=gene-cspA;Dbxref=GOA:Q7AQM5,InterPro:IPR002059,InterPro:IPR011129,InterPro:IPR012156,InterPro:IPR012340,InterPro:IPR019844,UniProtKB/TrEMBL:Q7AQM5,NCBI_GP:CAC29706.1;Name=CAC29706.1;Note=Similar to M. tuberculosis cspA%2C Rv3648c%2C probable cold shock protein%2C SW:CSPA_MYCTU (O06360) (67 aa)%3B Fasta score E(): 3.9e-27%2C 97.0%25 identity in 67 aa overlap. Similar to many e.g. Arthrobacter globiformis csp%2C cold shock protein%2C SW:CSP_ARTGO (P54584) (67 aa)%3B Fasta score E(): 8.8e-19%2C 71.6%25 identity in 67 aa overlap. Previously sequenced as TR:O69550 (EMBL:AL023093) (67 aa)%3B Fasta score E(): 1.2e-27%2C 100.0%25 identity in 67 aa overlap. Contains Pfam match to entry PF00313 CSD%2C 'Cold-shock' DNA-binding domain. Contains PS00352 'Cold-shock' DNA-binding domain signature.%3B~Similar to ML2147;gbkey=CDS;gene=cspA;product=putative cold shock protein;protein_id=CAC29706.1;transl_table=11
AL450380.1	EMBL	sequence_feature	264898	265098	.	+	.	ID=id-cspA;Note=Pfam match to entry PF00313 CSD%2C 'Cold-shock' DNA-binding domain%2C score 150.80%2C E-value 2.4e-41;gbkey=misc_feature;gene=cspA
AL450380.1	EMBL	sequence_feature	264940	264999	.	+	.	ID=id-cspA-2;Note=PS00352 'Cold-shock' DNA-binding domain signature;gbkey=misc_feature;gene=cspA
AL450380.1	EMBL	gene	265213	265815	.	+	.	ID=gene-ML0199;Name=ML0199;gbkey=Gene;gene=ML0199;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	265213	265815	.	+	0	ID=cds-CAC29707.1;Parent=gene-ML0199;Dbxref=UniProtKB/TrEMBL:Q7AQM4,NCBI_GP:CAC29707.1;Name=CAC29707.1;Note=Similar to M. tuberculosis Rv3647c%2C hypothetical protein%2C TR:O06361 (EMBL:AL123456) (192 aa)%3B Fasta score E(): 0%2C 80.4%25 identity in 199 aa overlap. Previously sequenced as TR:O69549 (EMBL:AL023093) (200 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 200 aa overlap.;gbkey=CDS;gene=ML0199;product=CAC29707.1;protein_id=CAC29707.1;transl_table=11
AL450380.1	EMBL	gene	266033	268876	.	+	.	ID=gene-topA;Name=topA;gbkey=Gene;gene=topA;gene_biotype=protein_coding;gene_synonym=ML0200
AL450380.1	EMBL	CDS	266033	268876	.	+	0	ID=cds-CAC29708.1;Parent=gene-topA;Dbxref=GOA:O69548,InterPro:IPR000380,InterPro:IPR003601,InterPro:IPR003602,InterPro:IPR005733,InterPro:IPR006171,InterPro:IPR013497,InterPro:IPR013824,InterPro:IPR013825,InterPro:IPR023405,InterPro:IPR023406,InterPro:IPR025589,InterPro:IPR028612,NCBI_GP:CAC29708.1;Name=CAC29708.1;Note=Similar to M. tuberculosis topA%2C DNA topoisomerase I%2C SW:TOP1_MYCTU (Q59567) (934 aa)%3B Fasta score E(): 0%2C 84.3%25 identity in 942 aa overlap. Previously sequenced as SW:TOP1_MYCLE (O69548) (947 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 947 aa overlap. Contains Pfam match to entry PF01131 Topoisom_bac%2C Prokaryotic DNA topoisomerase. Contains Pfam match to entry PF01751 Toprim%2C Toprim domain. Contains PS00396 Prokaryotic DNA topoisomerase I active site.;gbkey=CDS;gene=topA;product=putative DNA topoisomerase I;protein_id=CAC29708.1;transl_table=11
AL450380.1	EMBL	sequence_feature	266078	266446	.	+	.	ID=id-topA;Note=Pfam match to entry PF01751 Toprim%2C Toprim domain%2C score 150.70%2C E-value 2.6e-41;gbkey=misc_feature;gene=topA
AL450380.1	EMBL	sequence_feature	266483	267805	.	+	.	ID=id-topA-2;Note=Pfam match to entry PF01131 Topoisom_bac%2C Prokaryotic DNA topoisomerase%2C score 657.00%2C E-value 9.7e-194;gbkey=misc_feature;gene=topA
AL450380.1	EMBL	sequence_feature	267029	267073	.	+	.	ID=id-topA-3;Note=PS00396 Prokaryotic DNA topoisomerase I active site;gbkey=misc_feature;gene=topA
AL450380.1	EMBL	gene	268857	270449	.	-	.	ID=gene-ML0201;Name=ML0201;gbkey=Gene;gene=ML0201;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	268857	270449	.	-	0	ID=cds-CAC29709.1;Parent=gene-ML0201;Dbxref=GOA:Q7AQM3,InterPro:IPR001054,InterPro:IPR003660,InterPro:IPR029787,UniProtKB/TrEMBL:Q7AQM3,NCBI_GP:CAC29709.1;Name=CAC29709.1;Note=Similar to M. tuberculosis Rv3645%2C probable transmembrane protein%2C TR:O06362 (EMBL:AL123456) (549 aa)%3B Fasta score E(): 0%2C 85.3%25 identity in 530 aa overlap and to several other putative membrane proteins from M. tuberculosis. Shares regions of similarity with adenylate cyclases e.g. Anabaena sp. (strain PCC 7120) cyaA%2C adenylate cyclase%2C TR:P94180 (EMBL:D89622) (735 aa)%3B Fasta score E(): 1.5e-16%2C 33.3%25 identity in 228 aa overlap. Previously sequenced as TR:O69547 (EMBL:AL023093) (530 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 530 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions. Contains Pfam match to entry PF00672 DUF5%2C Domain found in bacterial signal proteins. Contains 2 Pfam matches to entry PF00211 guanylate_cyc%2C Adenylate and Guanylate cyclase catalytic domain.;gbkey=CDS;gene=ML0201;product=putative membrane protein;protein_id=CAC29709.1;transl_table=11
AL450380.1	EMBL	sequence_feature	269052	269162	.	-	.	ID=id-ML0201;Note=Pfam match to entry PF00211 guanylate_cyc%2C Adenylate and Guanylate cyclase catalytic domain%2C score 25.40%2C E-value 1.3e-05;gbkey=misc_feature;gene=ML0201
AL450380.1	EMBL	sequence_feature	269247	269450	.	-	.	ID=id-ML0201-2;Note=Pfam match to entry PF00211 guanylate_cyc%2C Adenylate and Guanylate cyclase catalytic domain%2C score 31.20%2C E-value 3.4e-07;gbkey=misc_feature;gene=ML0201
AL450380.1	EMBL	sequence_feature	269526	269735	.	-	.	ID=id-ML0201-3;Note=Pfam match to entry PF00672 DUF5%2C Domain found in bacterial signal proteins%2C score 63.60%2C E-value 4.3e-15;gbkey=misc_feature;gene=ML0201
AL450380.1	EMBL	gene	270605	271822	.	+	.	ID=gene-ML0202;Name=ML0202;gbkey=Gene;gene=ML0202;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	270605	271822	.	+	0	ID=cds-CAC29710.1;Parent=gene-ML0202;Dbxref=GOA:Q7AQM2,InterPro:IPR003593,InterPro:IPR004622,InterPro:IPR008921,InterPro:IPR027417,UniProtKB/TrEMBL:Q7AQM2,NCBI_GP:CAC29710.1;Name=CAC29710.1;Note=Similar to M. tuberculosis Rv3644c%2C hypothetical protein%2C TR:O06363 (EMBL:AL123456) (401 aa)%3B Fasta score E(): 0%2C 84.4%25 identity in 404 aa overlap. Similar to the N-termini of many DNA polymerase III subunits e.g. Escherichia coli holB%2C DNA polymerase III%2C delta' subunit%2C SW:HOLB_ECOLI (P28631) (334 aa)%3B Fasta score E(): 2.9e-13%2C 35.1%25 identity in 205 aa overlap. Previously sequenced as TR:O69546 (EMBL:AL023093) (405 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 405 aa overlap.%3B~Similar to the N-terminus of ML2335;gbkey=CDS;gene=ML0202;product=conserved hypothetical protein;protein_id=CAC29710.1;transl_table=11
AL450380.1	EMBL	gene	271901	271976	.	+	.	ID=gene-thrU;Name=thrU;gbkey=Gene;gene=thrU;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	271901	271976	.	+	.	ID=rna-thrU;Parent=gene-thrU;Note=tRNA Thr anticodon CGT%2C Cove score 85.20;gbkey=tRNA;gene=thrU;product=tRNA-Thr
AL450380.1	EMBL	exon	271901	271976	.	+	.	ID=exon-thrU-1;Parent=rna-thrU;Note=tRNA Thr anticodon CGT%2C Cove score 85.20;gbkey=tRNA;gene=thrU;product=tRNA-Thr
AL450380.1	EMBL	gene	273290	274999	.	-	.	ID=gene-ML0203;Name=ML0203;gbkey=Gene;gene=ML0203;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	273290	274999	.	-	0	ID=cds-CAC29711.1;Parent=gene-ML0203;Dbxref=UniProtKB/TrEMBL:Q7AQM1,NCBI_GP:CAC29711.1;Name=CAC29711.1;Note=Similar to M. tuberculosis Rv3635%2C probable membrane protein%2C TR:O06372 (EMBL:AL123456) (591 aa)%3B Fasta score E(): 0%2C 77.2%25 identity in 569 aa overlap. Previously sequenced as TR:O69545 (EMBL:AL023093) (569 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 569 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0203;product=putative membrane protein;protein_id=CAC29711.1;transl_table=11
AL450380.1	EMBL	gene	275049	276008	.	+	.	ID=gene-rmlB2;Name=rmlB2;gbkey=Gene;gene=rmlB2;gene_biotype=protein_coding;gene_synonym=ML0204
AL450380.1	EMBL	CDS	275049	276008	.	+	0	ID=cds-CAC29712.1;Parent=gene-rmlB2;Dbxref=GOA:Q7AQM0,InterPro:IPR001509,InterPro:IPR016040,UniProtKB/TrEMBL:Q7AQM0,NCBI_GP:CAC29712.1;Name=CAC29712.1;Note=Similar to M. tuberculosis rmlB2%2C possible dTDP-Glucose 4%2C6-dehydratase%2C TR:O06373 (EMBL:AL123456) (314 aa)%3B Fasta score E(): 0%2C 86.1%25 identity in 309 aa overlap. Similar to bacterial sugar-nucleotide dehydratases (many putative) e.g. Streptomyces venezuelae desIV%2C TDP-glucose-4%2C6-dehydratase%2C TR:Q9ZGH3 (EMBL:AF079762) (337 aa)%3B Fasta score E(): 1.4e-24%2C 34.3%25 identity in 321 aa overlap. Previously sequenced as TR:O69544 (EMBL:AL023093) (319 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 319 aa overlap. Contains Pfam match to entry PF01370 Epimerase%2C NAD dependent epimerase/dehydratase family. Contains PS00061 Short-chain dehydrogenases/reductases family signature.%3B~Similar to ML1964;gbkey=CDS;gene=rmlB2;product=putative sugar-nucleotide dehydratase;protein_id=CAC29712.1;transl_table=11
AL450380.1	EMBL	sequence_feature	275070	275999	.	+	.	ID=id-rmlB2;Note=Pfam match to entry PF01370 Epimerase%2C NAD dependent epimerase/dehydratase family%2C score 276.90%2C E-value 2.7e-79;gbkey=misc_feature;gene=rmlB2
AL450380.1	EMBL	sequence_feature	275460	275546	.	+	.	ID=id-rmlB2-2;Note=PS00061 Short-chain dehydrogenases/reductases family signature;gbkey=misc_feature;gene=rmlB2
AL450380.1	EMBL	repeat_region	276000	276785	.	-	.	ID=id-AL450380.1:276000..276785;Note=Dispersed repeat%2C RLEP%2C copy 4;gbkey=repeat_region
AL450380.1	EMBL	gene	276707	277777	.	-	.	ID=gene-ML0205;Name=ML0205;gbkey=Gene;gene=ML0205;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	276707	277777	.	-	0	ID=cds-CAC29713.1;Parent=gene-ML0205;Dbxref=InterPro:IPR007427,UniProtKB/TrEMBL:Q7AQL9,NCBI_GP:CAC29713.1;Name=CAC29713.1;Note=Similar to M. tuberculosis Rv3629c%2C possible membrane protein%2C TR:O06378 (EMBL:AL123456) (365 aa)%3B Fasta score E(): 0%2C 66.2%25 identity in 361 aa overlap. Similar to other bacterial hypothetical membrane proteins e.g. Streptomyces coelicolor SCC8A.24C%2C putative integral membrane protein%2C TR:CAB92842 (EMBL:AL356892) (380 aa)%3B Fasta score E(): 1e-21%2C 47.5%25 identity in 377 aa overlap. Previously sequenced as TR:O69543 (EMBL:AL023093) (356 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 356 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0205;product=putative membrane protein;protein_id=CAC29713.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	277782	277788	.	-	.	ID=id-AL450380.1:277782..277788;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	277944	279039	.	+	.	ID=gene-ML0206;Name=ML0206;gbkey=Gene;gene=ML0206;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	277944	279039	.	+	0	ID=cds-ML0206;Parent=gene-ML0206;Note=Possible pseudogene of M. tuberculosis orthologue Rv3630 (Best blastx score 392);gbkey=CDS;gene=ML0206;product=unknown membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	279051	279770	.	+	.	ID=gene-ML0207;Name=ML0207;gbkey=Gene;gene=ML0207;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	279051	279770	.	+	0	ID=cds-CAC29715.1;Parent=gene-ML0207;Dbxref=GOA:Q7AQL8,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:Q7AQL8,NCBI_GP:CAC29715.1;Name=CAC29715.1;Note=Similar to M. tuberculosis Rv3631%2C possible glycosyltransferase%2C TR:O06376 (EMBL:AL123456) (241 aa)%3B Fasta score E(): 0%2C 80.8%25 identity in 239 aa overlap. Similar to many bacterial hypothetical proteins. Previously sequenced as TR:O69542 (EMBL:PS50167) (239 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 239 aa overlap. Contains Pfam match to entry PF00535 Glycos_transf_2%2C Glycosyl transferases.%3B~Similar to ML1440;gbkey=CDS;gene=ML0207;product=putative glycosyltransferase;protein_id=CAC29715.1;transl_table=11
AL450380.1	EMBL	sequence_feature	279081	279572	.	+	.	ID=id-ML0207;Note=Pfam match to entry PF00535 Glycos_transf_2%2C Glycosyl transferases%2C score 57.10%2C E-value 3.8e-13;gbkey=misc_feature;gene=ML0207
AL450380.1	EMBL	ribosome_entry_site	279771	279776	.	+	.	ID=id-AL450380.1:279771..279776;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	279784	280125	.	+	.	ID=gene-ML0208;Name=ML0208;gbkey=Gene;gene=ML0208;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	279784	280125	.	+	0	ID=cds-CAC29716.1;Parent=gene-ML0208;Dbxref=InterPro:IPR019277,UniProtKB/TrEMBL:Q7AQL7,NCBI_GP:CAC29716.1;Name=CAC29716.1;Note=Similar to M. tuberculosis Rv3632%2C hypothetical protein%2C TR:O06375 (EMBL:AL123456) (114 aa)%3B Fasta score E(): 0%2C 82.0%25 identity in 111 aa overlap. Previously sequenced as TR:O69541 (EMBL:AL023093) (113 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 113 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0208;product=putative membrane protein;protein_id=CAC29716.1;transl_table=11
AL450380.1	EMBL	repeat_region	279989	280838	.	+	.	ID=id-AL450380.1:279989..280838;Note=Dispersed repeat%2C RLEP%2C copy 5;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	280783	281282	.	-	.	ID=gene-ML0209;Name=ML0209;gbkey=Gene;gene=ML0209;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	280783	281282	.	-	0	ID=cds-ML0209;Parent=gene-ML0209;Note=Possible pseudogene similar to M. tuberculosis paralogue Rv1748 (Best blastx score 146);gbkey=CDS;gene=ML0209;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	281543	282031	.	-	.	ID=gene-ppa;Name=ppa;gbkey=Gene;gene=ppa;gene_biotype=protein_coding;gene_synonym=ML0210
AL450380.1	EMBL	CDS	281543	282031	.	-	0	ID=cds-CAC29718.1;Parent=gene-ppa;Dbxref=GOA:O69540,InterPro:IPR008162,PDB:4ECP,NCBI_GP:CAC29718.1;Name=CAC29718.1;Note=Similar to M. tuberculosis ppa%2C Rv3628%2C probable inorganic pyrophosphatase%2C SW:IPYR_MYCTU (O06379) (162 aa)%3B Fasta score E(): 0%2C 89.5%25 identity in 162 aa overlap. Similar to many e.g. Sulfolobus acidocaldarius ppa%2C inorganic pyrophosphatase%2C SW:IPYR_SULAC (P50308) (173 aa)%3B Fasta score E(): 1.1e-27%2C 45.9%25 identity in 159 aa overlap. Previously sequenced as SW:IPYR_MYCLE (O69540) (162 aa)%3B Fasta score E(): 0%2C 99.4%25 identity in 162 aa overlap. Contains Pfam match to entry PF00719 Pyrophosphatase%2C Inorganic pyrophosphatase. Contains PS00387 Inorganic pyrophosphatase signature.;gbkey=CDS;gene=ppa;product=putative inorganic pyrophosphatase;protein_id=CAC29718.1;transl_table=11
AL450380.1	EMBL	sequence_feature	281555	282022	.	-	.	ID=id-ppa;Note=Pfam match to entry PF00719 Pyrophosphatase%2C Inorganic pyrophosphatase%2C score 172.10%2C E-value 9.3e-48;gbkey=misc_feature;gene=ppa
AL450380.1	EMBL	sequence_feature	281858	281878	.	-	.	ID=id-ppa-2;Note=PS00387 Inorganic pyrophosphatase signature;gbkey=misc_feature;gene=ppa
AL450380.1	EMBL	ribosome_entry_site	282040	282045	.	-	.	ID=id-AL450380.1:282040..282045;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	ribosome_entry_site	282147	282152	.	+	.	ID=id-AL450380.1:282147..282152;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	282157	283542	.	+	.	ID=gene-ML0211;Name=ML0211;gbkey=Gene;gene=ML0211;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	282157	283542	.	+	0	ID=cds-CAC29719.1;Parent=gene-ML0211;Dbxref=GOA:Q7AQL6,InterPro:IPR000667,InterPro:IPR012338,UniProtKB/TrEMBL:Q7AQL6,NCBI_GP:CAC29719.1;Name=CAC29719.1;Note=Similar to M. tuberculosis Rv3627c%2C possible penicillin-binding protein%2C TR:O06380 (EMBL:AL123456) (461 aa)%3B Fasta score E(): 0%2C 76.0%25 identity in 462 aa overlap. Shows weak similarity to penicillin-binding proteins e.g. Neisseria gonorrhoeae pbp3%2C penicillin binding protein 3%2C TR:O85665 (EMBL:AF071224) (469 aa)%3B Fasta score E(): 4.5e-08%2C 33.1%25 identity in 163 aa overlap. Similar to putative carboxypeptidases from Streptomyces coelicolor e.g. SCE9.15C%2C possible penicillin-binding protein%2C TR:Q9X8I8 (EMBL:AL049841) (459 aa)%3B Fasta score E(): 3.8e-32%2C 36.3%25 identity in 435 aa overlap. Previously sequenced as TR:O69539 (EMBL:AL023093) (461 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 461 aa overlap. Contains a possible N-terminal signal sequence. Contains Pfam match to entry PF02113 Peptidase_S13%2C D-Ala-D-Ala carboxypeptidase 3 (S13) family.;gbkey=CDS;gene=ML0211;product=putative carboxypeptidase;protein_id=CAC29719.1;transl_table=11
AL450380.1	EMBL	sequence_feature	282439	283467	.	+	.	ID=id-ML0211;Note=Pfam match to entry PF02113 Peptidase_S13%2C D-Ala-D-Ala carboxypeptidase 3 (S13) family%2C score 519.60%2C E-value 2.3e-152;gbkey=misc_feature;gene=ML0211
AL450380.1	EMBL	pseudogene	283539	284579	.	+	.	ID=gene-ML0212;Name=ML0212;gbkey=Gene;gene=ML0212;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	283539	284579	.	+	0	ID=cds-ML0212;Parent=gene-ML0212;Note=Possible pseudogene of M. tuberculosis orthologue Rv3626c (Best blastx score 1003);gbkey=CDS;gene=ML0212;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	284580	285551	.	+	.	ID=gene-mesJ;Name=mesJ;gbkey=Gene;gene=mesJ;gene_biotype=protein_coding;gene_synonym=ML0213
AL450380.1	EMBL	CDS	284580	285551	.	+	0	ID=cds-CAC29721.1;Parent=gene-mesJ;Dbxref=GOA:O69538,InterPro:IPR011063,InterPro:IPR012094,InterPro:IPR012795,InterPro:IPR014729,InterPro:IPR015262,NCBI_GP:CAC29721.1;Name=CAC29721.1;Note=Similar to M. tuberculosis mesJ%2C Rv3625c%2C conserved hypothetical protein%2C SW:Y0C5_MYCTU (O06382) (323 aa)%3B Fasta score E(): 0%2C 78.0%25 identity in 327 aa overlap. Similar to many e.g. Escherichia coli mesJ%2C putative cell cycle protein%2C SW:MESJ_ECOLI (P52097) (432 aa)%3B Fasta score E(): 3.9e-12%2C 33.0%25 identity in 279 aa overlap. Previously sequenced as SW:Y0C5_MYCLE (O69538) (323 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 323 aa overlap.;gbkey=CDS;gene=mesJ;product=conserved hypothetical protein;protein_id=CAC29721.1;transl_table=11
AL450380.1	EMBL	gene	285584	286225	.	+	.	ID=gene-hpt;Name=hpt;gbkey=Gene;gene=hpt;gene_biotype=protein_coding;gene_synonym=ML0214
AL450380.1	EMBL	CDS	285584	286225	.	+	0	ID=cds-CAC29722.1;Parent=gene-hpt;Dbxref=GOA:O69537,InterPro:IPR000836,InterPro:IPR005904,InterPro:IPR029057,NCBI_GP:CAC29722.1;Name=CAC29722.1;Note=Similar to M. tuberculosis hpt%2C Rv3624c%2C probable hypoxanthine-guanine phosphoribosyltransferase%2C SW:HPRT_MYCTU (O06383) (216 aa)%3B Fasta score E(): 0%2C 83.1%25 identity in 207 aa overlap. Similar to many e.g. Salmonella typhimurium hprt%2C hypoxanthine phosphoribosyltransferase%2C TR:O33799 (EMBL:AF008931) (178 aa)%3B Fasta score E(): 9.6e-32%2C 50.9%25 identity in 169 aa overlap. Previously sequenced as TR:O69537 (EMBL:AL023093) (213 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 213 aa overlap. Contains Pfam match to entry PF00156 Pribosyltran%2C Phosphoribosyl transferase domain. Contains PS00103 Purine/pyrimidine phosphoribosyl transferases signature.;gbkey=CDS;gene=hpt;product=putative hypoxanthine phosphoribosyltransferase;protein_id=CAC29722.1;transl_table=11
AL450380.1	EMBL	sequence_feature	285665	286147	.	+	.	ID=id-hpt;Note=Pfam match to entry PF00156 Pribosyltran%2C Phosphoribosyl transferase domain%2C score 84.60%2C E-value 2e-21;gbkey=misc_feature;gene=hpt
AL450380.1	EMBL	sequence_feature	285965	286003	.	+	.	ID=id-hpt-2;Note=PS00103 Purine/pyrimidine phosphoribosyl transferases signature;gbkey=misc_feature;gene=hpt
AL450380.1	EMBL	pseudogene	286276	286674	.	-	.	ID=gene-ML0215;Name=ML0215;gbkey=Gene;gene=ML0215;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	286276	286674	.	-	0	ID=cds-ML0215;Parent=gene-ML0215;Note=Possible pseudogene of M. tuberculosis orthologue lpqG (Best blastx score 222);gbkey=CDS;gene=ML0215;product=putative lipoprotein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	286829	287302	.	-	.	ID=gene-ML0216;Name=ML0216;gbkey=Gene;gene=ML0216;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	286829	287302	.	-	0	ID=cds-ML0216;Parent=gene-ML0216;Note=Possible pseudogene similar to M. tuberculosis paralogue Rv0393 (Best blastx score 102);gbkey=CDS;gene=ML0216;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	287703	287723	.	+	.	ID=id-AL450380.1:287703..287723;Note=21 bp direct repeat%2C TGTTGTCTTAGAGCATTGATT;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	287724	287744	.	+	.	ID=id-AL450380.1:287724..287744;Note=21 bp direct repeat%2C TGTTGTCTTAGAGCATTGATT;gbkey=repeat_region
AL450380.1	EMBL	gene	288678	288923	.	+	.	ID=gene-ML0217;Name=ML0217;gbkey=Gene;gene=ML0217;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	288678	288923	.	+	0	ID=cds-CAC29725.1;Parent=gene-ML0217;Dbxref=UniProtKB/TrEMBL:Q9CD59,NCBI_GP:CAC29725.1;Name=CAC29725.1;Note=Unknown function. Possibly the remains of a disrupted gene.;gbkey=CDS;gene=ML0217;product=hypothetical protein;protein_id=CAC29725.1;transl_table=11
AL450380.1	EMBL	gene	289829	290215	.	-	.	ID=gene-ML0218;Name=ML0218;gbkey=Gene;gene=ML0218;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	289829	290215	.	-	0	ID=cds-CAC29726.1;Parent=gene-ML0218;Dbxref=UniProtKB/TrEMBL:Q7AQL5,NCBI_GP:CAC29726.1;Name=CAC29726.1;Note=Improbable CDS suggested by GC frameplot. Possibly the remains of a disrupted gene. Previously sequenced as TR:O69534 (EMBL:AL023093) (128 aa)%3B Fasta score E(): 0%2C 99.2%25 identity in 128 aa overlap.;gbkey=CDS;gene=ML0218;product=hypothetical protein;protein_id=CAC29726.1;transl_table=11
AL450380.1	EMBL	pseudogene	290378	290991	.	-	.	ID=gene-ML0219;Name=ML0219;gbkey=Gene;gene=ML0219;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	290378	290991	.	-	0	ID=cds-ML0219;Parent=gene-ML0219;Note=Possible pseudogene similar to M. tuberculosis paralogue Rv3726 (Best blastx score 114);gbkey=CDS;gene=ML0219;product=Putative alcohol dehydrogenase%2C zinc-type (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	291435	292461	.	-	.	ID=gene-ML0220;Name=ML0220;gbkey=Gene;gene=ML0220;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	291435	292461	.	-	0	ID=cds-ML0220;Parent=gene-ML0220;Note=Possible pseudogene of M. tuberculosis orthologue Rv3618 (Best blastx score 208);gbkey=CDS;gene=ML0220;product=similar bacterial luciferase alpha chains (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	292471	293353	.	-	.	ID=gene-ML0221;Name=ML0221;gbkey=Gene;gene=ML0221;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	292471	293353	.	-	0	ID=cds-ML0221;Parent=gene-ML0221;Note=Possible pseudogene of M. tuberculosis orthologue ephA (Best blastx score 177);gbkey=CDS;gene=ML0221;product=putative hydrolase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	293693	296065	.	+	.	ID=gene-ftsH;Name=ftsH;gbkey=Gene;gene=ftsH;gene_biotype=protein_coding;gene_synonym=ML0222
AL450380.1	EMBL	CDS	293693	296065	.	+	0	ID=cds-CAC29730.1;Parent=gene-ftsH;Dbxref=GOA:Q9CD58,InterPro:IPR000642,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR003960,InterPro:IPR005936,InterPro:IPR027417,NCBI_GP:CAC29730.1;Name=CAC29730.1;Note=Similar to M. tuberculosis ftsH%2C Rv3610c%2C possible cell division protein%2C SW:FTSH_MYCTU (P96942) (760 aa)%3B Fasta score E(): 0%2C 87.2%25 identity in 790 aa overlap. Similar to many e.g. Escherichia coli ftsH%2C cell division protein%2C SW:FTSH_ECOLI (P28691) (644 aa)%3B Fasta score E(): 0%2C 49.3%25 identity in 611 aa overlap. Previously sequenced as TR:O69532 (EMBL:AL023093) (787 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 787 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions. Contains Pfam match to entry PF01434 Peptidase_M41%2C Peptidase family M41. Contains Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA). Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00674 AAA-protein family signature.;gbkey=CDS;gene=ftsH;product=putative integral membrane peptidase;protein_id=CAC29730.1;transl_table=11
AL450380.1	EMBL	sequence_feature	294293	294856	.	+	.	ID=id-ftsH;Note=Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%2C score 339.00%2C E-value 5.2e-98;gbkey=misc_feature;gene=ftsH
AL450380.1	EMBL	sequence_feature	294308	294331	.	+	.	ID=id-ftsH-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ftsH
AL450380.1	EMBL	sequence_feature	294605	294661	.	+	.	ID=id-ftsH-3;Note=PS00674 AAA-protein family signature;gbkey=misc_feature;gene=ftsH
AL450380.1	EMBL	sequence_feature	294872	295504	.	+	.	ID=id-ftsH-4;Note=Pfam match to entry PF01434 Peptidase_M41%2C Peptidase family M41%2C score 413.20%2C E-value 2.4e-120;gbkey=misc_feature;gene=ftsH
AL450380.1	EMBL	ribosome_entry_site	296069	296075	.	+	.	ID=id-AL450380.1:296069..296075;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	296082	296699	.	+	.	ID=gene-folE;Name=folE;gbkey=Gene;gene=folE;gene_biotype=protein_coding;gene_synonym=ML0223
AL450380.1	EMBL	CDS	296082	296699	.	+	0	ID=cds-CAC29731.1;Parent=gene-folE;Dbxref=GOA:O69531,InterPro:IPR001474,InterPro:IPR018234,InterPro:IPR020602,NCBI_GP:CAC29731.1;Name=CAC29731.1;Note=Similar to M. tuberculosis folE%2C Rv3609c%2C GTP cyclohydrolase I%2C SW:GCH1_MYCTU (O06273) (202 aa)%3B Fasta score E(): 0%2C 82.0%25 identity in 205 aa overlap. Similar to many e.g. Bacillus subtilis mtrA%2C GTP cyclohydrolase I%2C SW:GCH1_BACSU (P19465) (190 aa)%3B Fasta score E(): 0%2C 59.5%25 identity in 190 aa overlap. Previously sequenced as SW:GCH1_MYCLE (O69531) (205 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 205 aa overlap. Contains Pfam match to entry PF01227 GTP_cyclohydroI%2C GTP cyclohydrolase I. Contains PS00859 GTP cyclohydrolase I signature 1. Contains PS00860 GTP cyclohydrolase I signature 2.;gbkey=CDS;gene=folE;product=putative GTP cyclohydrolase I;protein_id=CAC29731.1;transl_table=11
AL450380.1	EMBL	sequence_feature	296145	296693	.	+	.	ID=id-folE;Note=Pfam match to entry PF01227 GTP_cyclohydroI%2C GTP cyclohydrolase I%2C score 343.60%2C E-value 2.2e-99;gbkey=misc_feature;gene=folE
AL450380.1	EMBL	sequence_feature	296319	296369	.	+	.	ID=id-folE-2;Note=PS00859 GTP cyclohydrolase I signature 1;gbkey=misc_feature;gene=folE
AL450380.1	EMBL	sequence_feature	296469	296501	.	+	.	ID=id-folE-3;Note=PS00860 GTP cyclohydrolase I signature 2;gbkey=misc_feature;gene=folE
AL450380.1	EMBL	gene	296696	297550	.	+	.	ID=gene-folP;Name=folP;gbkey=Gene;gene=folP;gene_biotype=protein_coding;gene_synonym=ML0224
AL450380.1	EMBL	CDS	296696	297550	.	+	0	ID=cds-CAC29732.1;Parent=gene-folP;Dbxref=GOA:P0C0X1,InterPro:IPR000489,InterPro:IPR006390,InterPro:IPR011005,NCBI_GP:CAC29732.1;Name=CAC29732.1;Note=Similar to M. tuberculosis folP%2C Rv3608c%2C dihydropteroate synthase%2C SW:DHP1_MYCTU (O06274) (280 aa)%3B Fasta score E(): 0%2C 76.8%25 identity in 284 aa overlap. Previously sequenced as TR:O69530 (EMBL:AL023093) (284 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 284 aa overlap. Mutations in this gene result in diaminodiphenylsulfone resistance. Contains Pfam match to entry PF00809 DHPS%2C Dihydropteroate synthase. Contains PS00793 Dihydropteroate synthase signature 2.%3B~Similar to ML1063;gbkey=CDS;gene=folP;product=dihydropteroate synthase;protein_id=CAC29732.1;transl_table=11
AL450380.1	EMBL	sequence_feature	296720	297502	.	+	.	ID=id-folP;Note=Pfam match to entry PF00809 DHPS%2C Dihydropteroate synthase%2C score 428.10%2C E-value 7.9e-125;gbkey=misc_feature;gene=folP
AL450380.1	EMBL	sequence_feature	296819	296860	.	+	.	ID=id-folP-2;Note=PS00793 Dihydropteroate synthase signature 2;gbkey=misc_feature;gene=folP
AL450380.1	EMBL	gene	297543	297941	.	+	.	ID=gene-folB;Name=folB;gbkey=Gene;gene=folB;gene_biotype=protein_coding;gene_synonym=ML0225
AL450380.1	EMBL	CDS	297543	297941	.	+	0	ID=cds-CAC29733.1;Parent=gene-folB;Dbxref=GOA:O69529,InterPro:IPR006156,InterPro:IPR006157,NCBI_GP:CAC29733.1;Name=CAC29733.1;Note=Similar to M. tuberculosis folX%2C Rv3607c%2C probable dihydroneopterin aldolase%2C SW:FOLB_MYCTU (O06275) (133 aa)%3B Fasta score E(): 0%2C 74.8%25 identity in 131 aa overlap. Similar to many e.g. Staphylococcus aureus folB%2C dihydroneopterin aldolase%2C SW:FOLB_STAAU (P56740) (121 aa)%3B Fasta score E(): 1.9e-09%2C 33.9%25 identity in 121 aa overlap. Previously sequenced as SW:FOLB_MYCLE (O69529) (132 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 132 aa overlap. Contains Pfam match to entry PF02152 FolB%2C Dihydroneopterin aldolase.;gbkey=CDS;gene=folB;product=putative dihydroneopterin aldolase;protein_id=CAC29733.1;transl_table=11
AL450380.1	EMBL	sequence_feature	297555	297893	.	+	.	ID=id-folB;Note=Pfam match to entry PF02152 FolB%2C Dihydroneopterin aldolase%2C score 130.10%2C E-value 1.8e-36;gbkey=misc_feature;gene=folB
AL450380.1	EMBL	gene	297941	298516	.	+	.	ID=gene-folK;Name=folK;gbkey=Gene;gene=folK;gene_biotype=protein_coding;gene_synonym=ML0226
AL450380.1	EMBL	CDS	297941	298516	.	+	0	ID=cds-CAC29734.1;Parent=gene-folK;Dbxref=GOA:O69528,InterPro:IPR000550,NCBI_GP:CAC29734.1;Name=CAC29734.1;Note=Similar to M. tuberculosis folK%2C Rv3607c%2C probable 2-amino-4-hydroxy-6-hydroxymethyldihydropterine pyrophosphokinase%2C SW:HPPK_MYCTU (O06276) (188 aa)%3B Fasta score E(): 0%2C 63.2%25 identity in 190 aa overlap. Similar to others e.g. to the C-terminal half of Streptococcus pneumoniae sulD%2C bifunctional folate synthesis protein (includes: dihydroneopterin aldolase and 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase)%2C SW:SULD_STRPN (P22291) (270 aa)%3B Fasta score E(): 1.8e-07%2C 37.8%25 identity in 135 aa overlap. Previously sequenced as SW:HPPK_MYCLE (O69528) (191 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 191 aa overlap. Contains Pfam match to entry PF01288 HPPK%2C 7%2C8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Contains PS00794 7%2C8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature.;gbkey=CDS;gene=folK;product=putative 2-amino-4-hydroxy-6-hydroxymethyldihydropterine pyrophosphokinase;protein_id=CAC29734.1;transl_table=11
AL450380.1	EMBL	sequence_feature	297947	298357	.	+	.	ID=id-folK;Note=Pfam match to entry PF01288 HPPK%2C 7%2C8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)%2C score 246.10%2C E-value 1.5e-70;gbkey=misc_feature;gene=folK
AL450380.1	EMBL	sequence_feature	298193	298228	.	+	.	ID=id-folK-2;Note=PS00794 7%2C8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature;gbkey=misc_feature;gene=folK
AL450380.1	EMBL	gene	298516	298992	.	+	.	ID=gene-ML0227;Name=ML0227;gbkey=Gene;gene=ML0227;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	298516	298992	.	+	0	ID=cds-CAC29735.1;Parent=gene-ML0227;Dbxref=InterPro:IPR021517,UniProtKB/TrEMBL:Q7AQL4,NCBI_GP:CAC29735.1;Name=CAC29735.1;Note=Similar to M. tuberculosis Rv3605c%2C hypothetical protein%2C TR:O06277 (EMBL:AL123456) (158 aa)%3B Fasta score E(): 0%2C 85.4%25 identity in 158 aa overlap. Previously sequenced as TR:O69527 (EMBL:AL023093) (158 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 158 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0227;product=putative membrane protein;protein_id=CAC29735.1;transl_table=11
AL450380.1	EMBL	gene	299138	300436	.	+	.	ID=gene-ML0228;Name=ML0228;gbkey=Gene;gene=ML0228;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	299138	300436	.	+	0	ID=cds-CAC29736.1;Parent=gene-ML0228;Dbxref=UniProtKB/TrEMBL:Q7AQL3,NCBI_GP:CAC29736.1;Name=CAC29736.1;Note=Similar to M. tuberculosis Rv3604c%2C putative membrane protein%2C TR:O06278 (EMBL:AL123456) (462 aa)%3B Fasta score E(): 0%2C 59.7%25 identity in 432 aa overlap. Previously sequenced as TR:O69526 (EMBL:AL023093) (432 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 432 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0228;product=putative membrane protein;protein_id=CAC29736.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	300524	300527	.	+	.	ID=id-AL450380.1:300524..300527;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	300537	301466	.	+	.	ID=gene-ML0229;Name=ML0229;gbkey=Gene;gene=ML0229;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	300537	301466	.	+	0	ID=cds-CAC29737.1;Parent=gene-ML0229;Dbxref=GOA:Q7AQL2,InterPro:IPR008927,InterPro:IPR016040,InterPro:IPR018931,InterPro:IPR019665,UniProtKB/TrEMBL:Q7AQL2,NCBI_GP:CAC29737.1;Name=CAC29737.1;Note=Similar to M. tuberculosis Rv3603c%2C hypothetical protein%2C TR:O06279 (EMBL:AL123456) (303 aa)%3B Fasta score E(): 0%2C 67.8%25 identity in 311 aa overlap. Similar to the N-terminal half of Streptomyces coelicolor SCE126.02C%2C hypothetical protein%2C TR:Q9X845 (EMBL:AL049630) (420 aa)%3B Fasta score E(): 4.1e-24%2C 36.7%25 identity in 294 aa overlap. Previously sequenced as TR:O69525 (EMBL:AL023093) (309 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 309 aa overlap.;gbkey=CDS;gene=ML0229;product=conserved hypothetical protein;protein_id=CAC29737.1;transl_table=11
AL450380.1	EMBL	gene	301463	302404	.	+	.	ID=gene-panC;Name=panC;gbkey=Gene;gene=panC;gene_biotype=protein_coding;gene_synonym=ML0230
AL450380.1	EMBL	CDS	301463	302404	.	+	0	ID=cds-CAC29738.1;Parent=gene-panC;Dbxref=GOA:O69524,InterPro:IPR003721,InterPro:IPR014729,NCBI_GP:CAC29738.1;Name=CAC29738.1;Note=Similar to M. tuberculosis panC%2C putative pantoate-[beta]-alanine ligase%2C SW:PANC_MYCTU (O06280) (309 aa)%3B Fasta score E(): 0%2C 82.2%25 identity in 297 aa overlap. Similar to many e.g. Escherichia coli pantoate--beta-alanine ligase%2C SW:PANC_ECOL (P31663) (283 aa)%3B Fasta score E(): 0%2C 46.1%25 identity in 269 aa overlap. Previously sequenced as SW:PANC_MYCLE (O69524) (191 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 191 aa overlap.;gbkey=CDS;gene=panC;product=putative pantoate-[beta]-alanine ligase;protein_id=CAC29738.1;transl_table=11
AL450380.1	EMBL	gene	302404	302832	.	+	.	ID=gene-panD;Name=panD;gbkey=Gene;gene=panD;gene_biotype=protein_coding;gene_synonym=ML0231
AL450380.1	EMBL	CDS	302404	302832	.	+	0	ID=cds-CAC29739.1;Parent=gene-panD;Dbxref=GOA:Q9CD57,InterPro:IPR003190,InterPro:IPR009010,NCBI_GP:CAC29739.1;Name=CAC29739.1;Note=Similar to M. tuberculosis panD%2C putative aspartate-1-decarboxylase%2C SW:PAND_MYCTU (Z95557) (139 aa)%3B Fasta score E(): 0%2C 82.9%25 identity in 140 aa overlap. Similar to Corynebacterium glutamicum panD%2C L-aspartate-alpha-decarboxylase precursor%2C TR:Q9X4N0 (EMBL:AF116184) (136 aa)%3B Fasta score E(): 9.3e-29%2C 68.8%25 identity in 128 aa overlap.;gbkey=CDS;gene=panD;product=putative aspartate-1-decarboxylase;protein_id=CAC29739.1;transl_table=11
AL450380.1	EMBL	gene	302835	303659	.	+	.	ID=gene-ML0232;Name=ML0232;gbkey=Gene;gene=ML0232;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	302835	303659	.	+	0	ID=cds-CAC29740.1;Parent=gene-ML0232;Dbxref=GOA:Q9CD56,InterPro:IPR004619,NCBI_GP:CAC29740.1;Name=CAC29740.1;Note=Similar to M. tuberculosis Rv3600c%2C conserved hypothetical protein%2C TR:O06282 (EMBL:AL123456) (272 aa)%3B Fasta score E(): 0%2C 90.5%25 identity in 274 aa overlap. Similar to otehr bacterial hypothetical proteins e.g. Streptomyces coelicolor SCE94.31C%2C hypothetical protein%2C TR:Q9X8N6 (EMBL:AL049628) (265 aa)%3B Fasta score E(): 0%2C 52.0%25 identity in 269 aa overlap.;gbkey=CDS;gene=ML0232;product=conserved hypothetical protein;protein_id=CAC29740.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	303717	303720	.	+	.	ID=id-AL450380.1:303717..303720;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	303740	305263	.	+	.	ID=gene-lysS;Name=lysS;gbkey=Gene;gene=lysS;gene_biotype=protein_coding;gene_synonym=ML0233
AL450380.1	EMBL	CDS	303740	305263	.	+	0	ID=cds-CAC29741.1;Parent=gene-lysS;Dbxref=GOA:P46861,InterPro:IPR002313,InterPro:IPR004364,InterPro:IPR004365,InterPro:IPR006195,InterPro:IPR012340,InterPro:IPR018149,InterPro:IPR018150,NCBI_GP:CAC29741.1;Name=CAC29741.1;Note=Similar to M. tuberculosis lysS%2C Rv3598c%2C putative lysyl-tRNA synthase%2C SW:SYK_MYCTU (O06284) (505 aa)%3B Fasta score E(): 0%2C 85.4%25 identity in 501 aa overlap. Similar to Escherichia coli lysU%2C lysyl-tRNA synthase%2C SW:SYK2_ECOLI (P14825) (504 aa)%3B Fasta score E(): 0%2C 38.8%25 identity in 497 aa overlap. Contains Pfam match to entry PF00152 tRNA-synt_2%2C tRNA synthetases class II (D%2C K and N). Contains PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.%3B~Similar to the C-terminal half of ML1393;gbkey=CDS;gene=lysS;product=putative lysyl-tRNA synthase;protein_id=CAC29741.1;transl_table=11
AL450380.1	EMBL	sequence_feature	304211	305251	.	+	.	ID=id-lysS;Note=Pfam match to entry PF00152 tRNA-synt_2%2C tRNA synthetases class II (D%2C K and N)%2C score 375.40%2C E-value 5.6e-109;gbkey=misc_feature;gene=lysS
AL450380.1	EMBL	sequence_feature	304511	304564	.	+	.	ID=id-lysS-2;Note=PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1;gbkey=misc_feature;gene=lysS
AL450380.1	EMBL	ribosome_entry_site	305356	305359	.	+	.	ID=id-AL450380.1:305356..305359;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	305368	305706	.	+	.	ID=gene-lsr2;Name=lsr2;gbkey=Gene;gene=lsr2;gene_biotype=protein_coding;gene_synonym=ML0234
AL450380.1	EMBL	CDS	305368	305706	.	+	0	ID=cds-CAC29742.1;Parent=gene-lsr2;Dbxref=GOA:P24094,InterPro:IPR024412,NCBI_GP:CAC29742.1;Name=CAC29742.1;Note=Similar to M. tuberculosis lsr2%2C putative lsr protein%2C SW:LSR2_MYCTU (O06285) (112 aa)%3B Fasta score E(): 0%2C 92.9%25 identity in 112 aa overlap. Homologues also occur in Streptomyces coelicolor e.g. Streptomyces coelicolor SCE94.26C%2C putative lsr2-like protein%2C TR:Q9X8N1 (EMBL:AL049628) (111 aa)%3B Fasta score E(): 7.3e-18%2C 56.3%25 identity in 112 aa overlap. Previously sequenced as SW:.;gbkey=CDS;gene=lsr2;product=lsr2 protein (15 kDa antigen);protein_id=CAC29742.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	305988	305994	.	+	.	ID=id-AL450380.1:305988..305994;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	306003	308549	.	+	.	ID=gene-clpC;Name=clpC;gbkey=Gene;gene=clpC;gene_biotype=protein_coding;gene_synonym=ML0235
AL450380.1	EMBL	CDS	306003	308549	.	+	0	ID=cds-CAC29743.1;Parent=gene-clpC;Dbxref=GOA:P24428,InterPro:IPR001270,InterPro:IPR001943,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR004176,InterPro:IPR018368,InterPro:IPR019489,InterPro:IPR023150,InterPro:IPR027417,NCBI_GP:CAC29743.1;Name=CAC29743.1;Note=Similar to M. tuberculosis clpC%2C ATP-dependent Clp protease%2C SW:CLPC_MYCTU (O06286) (848 aa)%3B Fasta score E(): 0%2C 97.2%25 identity in 845 aa overlap. Similar to many e.g. Bacillus subtilis clpC%2C negative regulator of genetic competence (clpC-family) and Treponema hyodysenteriae tlyB%2C hemolysin B%2C SW:HLYB_TREHY (Q54316) (828 aa)%3B Fasta score E(): 0%2C 51.4%25 identity in 812 aa overlap. Contains Pfam match to entry PF00495 clpA_B%2C Chaperonin clpA/B. Contains Pfam match to entry PF02151 UVR%2C UvrB/uvrC motif. Contains 2 x PS00017 ATP/GTP-binding site motif A (P-loop).%3B~Similar to ML2490;gbkey=CDS;gene=clpC;product=putative ATP-dependent Clp protease;protein_id=CAC29743.1;transl_table=11
AL450380.1	EMBL	sequence_feature	306648	306671	.	+	.	ID=id-clpC;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=clpC
AL450380.1	EMBL	sequence_feature	307275	307382	.	+	.	ID=id-clpC-2;Note=Pfam match to entry PF02151 UVR%2C UvrB/uvrC motif%2C score 39.60%2C E-value 7e-08;gbkey=misc_feature;gene=clpC
AL450380.1	EMBL	sequence_feature	307434	308408	.	+	.	ID=id-clpC-3;Note=Pfam match to entry PF00495 clpA_B%2C Chaperonin clpA/B%2C score 647.10%2C E-value 9.5e-191;gbkey=misc_feature;gene=clpC
AL450380.1	EMBL	sequence_feature	307659	307682	.	+	.	ID=id-clpC-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=clpC
AL450380.1	EMBL	repeat_region	308814	308841	.	+	.	ID=id-AL450380.1:308814..308841;Note=14 copies of dinucleotide repeat%2C AT;gbkey=repeat_region
AL450380.1	EMBL	gene	309643	310899	.	-	.	ID=gene-pabB;Name=pabB;gbkey=Gene;gene=pabB;gene_biotype=protein_coding;gene_synonym=ML0236
AL450380.1	EMBL	CDS	309643	310899	.	-	0	ID=cds-CAC29744.1;Parent=gene-pabB;Dbxref=GOA:Q7AQL1,InterPro:IPR005801,InterPro:IPR005802,InterPro:IPR015890,InterPro:IPR019999,UniProtKB/TrEMBL:Q7AQL1,NCBI_GP:CAC29744.1;Name=CAC29744.1;Note=EC_number%3D4.1.3.-%3B~Similar to M. tuberculosis pabB%2C Rv1005c%2C putative para-aminobenzoate synthase component I%2C TR:O05591 (EMBL:Z94752) (458 aa)%3B Fasta score E(): 0%2C 79.1%25 identity in 412 aa overlap. Similar to many e.g. Escherichia coli para-aminobenzoate synthase component I%2C SW:PABB_ECOLI (P05041) (453 aa)%3B Fasta score E(): 5.5e-31%2C 35.2%25 identity in 378 aa overlap. When compared to the predicted M. tuberculosis translation%2C this CDS is missing the N-terminal 30 aa%2C thus it may be a pseudogene. Contains Pfam match to entry PF00425 chorismate_bind%2C chorismate binding enzyme.%3B~Similar to the C-terminal halves of ML0808 and ML1269;gbkey=CDS;gene=pabB;product=putative para-aminobenzoate synthase component;protein_id=CAC29744.1;transl_table=11
AL450380.1	EMBL	sequence_feature	309676	310242	.	-	.	ID=id-pabB;Note=Pfam match to entry PF00425 chorismate_bind%2C chorismate binding enzyme%2C score 192.30%2C E-value 6.7e-55;gbkey=misc_feature;gene=pabB
AL450380.1	EMBL	pseudogene	310900	311580	.	+	.	ID=gene-ML0237;Name=ML0237;gbkey=Gene;gene=ML0237;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	310900	311580	.	+	0	ID=cds-ML0237;Parent=gene-ML0237;Note=Possible pseudogene of M. tuberculosis orthologue Rv1006 (Best blastx score 389);gbkey=CDS;gene=ML0237;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	312208	313821	.	-	.	ID=gene-metS;Name=metS;gbkey=Gene;gene=metS;gene_biotype=protein_coding;gene_synonym=ML0238
AL450380.1	EMBL	CDS	312208	313821	.	-	0	ID=cds-CAC29746.1;Parent=gene-metS;Dbxref=GOA:Q9CD55,InterPro:IPR001412,InterPro:IPR009080,InterPro:IPR014729,InterPro:IPR014758,InterPro:IPR015413,InterPro:IPR023457,NCBI_GP:CAC29746.1;Name=CAC29746.1;Note=Similar to M. tuberculosis metS%2C Rv1007c%2C methionyl-tRNA synthetase%2C SW:SYM_MYCTU (O05593) (519 aa)%3B Fasta score E(): 0%2C 85.7%25 identity in 516 aa overlap. Similar to many e.g. Bacillus stearothermophilus metG (metS)%2C methionyl-tRNA synthetase%2C SW:SYM_BACST (P23920) (649 aa)%3B Fasta score E(): 0%2C 40.9%25 identity in 550 aa overlap. Contains Pfam match to entry PF00133 tRNA-synt_1%2C tRNA synthetases class I (I%2C L%2C M and V). Contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature.;gbkey=CDS;gene=metS;product=putative methionyl-tRNA synthase;protein_id=CAC29746.1;transl_table=11
AL450380.1	EMBL	sequence_feature	312619	313821	.	-	.	ID=id-metS;Note=Pfam match to entry PF00133 tRNA-synt_1%2C tRNA synthetases class I (I%2C L%2C M and V)%2C score -186.40%2C E-value 1.5e-07;gbkey=misc_feature;gene=metS
AL450380.1	EMBL	sequence_feature	313756	313785	.	-	.	ID=id-metS-2;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature;gbkey=misc_feature;gene=metS
AL450380.1	EMBL	gene	313910	314698	.	+	.	ID=gene-ML0239;Name=ML0239;gbkey=Gene;gene=ML0239;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	313910	314698	.	+	0	ID=cds-CAC29747.1;Parent=gene-ML0239;Dbxref=GOA:Q9CD54,InterPro:IPR001130,InterPro:IPR015991,InterPro:IPR018228,UniProtKB/TrEMBL:Q9CD54,NCBI_GP:CAC29747.1;Name=CAC29747.1;Note=Similar to M. tuberculosis ycfH%2C Rv1008%2C conserved hypothetical protein%2C TR:O08343 (EMBL:AL123456) (264 aa)%3B Fasta score E(): 0%2C 82.3%25 identity in 260 aa overlap. Similar to many e.g. Bacillus subtilis yabD%2C conserved hypothetical protein%2C SW:YABD_BACSU (P37545) (255 aa)%3B Fasta score E(): 0%2C 41.0%25 identity in 261 aa overlap. Contains Pfam match to entry PF01026 UPF0006%2C Metalloenzyme of unknown function. Contains PS01137 Uncharacterized protein family UPF0006 signature 1. Contains PS01091 Uncharacterized protein family UPF0006 signature 3.;gbkey=CDS;gene=ML0239;product=conserved hypothetical protein;protein_id=CAC29747.1;transl_table=11
AL450380.1	EMBL	sequence_feature	313910	313936	.	+	.	ID=id-ML0239;Note=PS01137 Uncharacterized protein family UPF0006 signature 1;gbkey=misc_feature;gene=ML0239
AL450380.1	EMBL	sequence_feature	313925	314683	.	+	.	ID=id-ML0239-2;Note=Pfam match to entry PF01026 UPF0006%2C Metalloenzyme of unknown function%2C score 348.40%2C E-value 7.8e-101;gbkey=misc_feature;gene=ML0239
AL450380.1	EMBL	sequence_feature	314489	314539	.	+	.	ID=id-ML0239-3;Note=PS01091 Uncharacterized protein family UPF0006 signature 3;gbkey=misc_feature;gene=ML0239
AL450380.1	EMBL	ribosome_entry_site	314928	314932	.	+	.	ID=id-AL450380.1:314928..314932;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	314948	316075	.	+	.	ID=gene-ML0240;Name=ML0240;gbkey=Gene;gene=ML0240;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	314948	316075	.	+	0	ID=cds-CAC29748.1;Parent=gene-ML0240;Dbxref=InterPro:IPR007137,InterPro:IPR010618,InterPro:IPR011098,InterPro:IPR023346,UniProtKB/TrEMBL:Q9CD53,NCBI_GP:CAC29748.1;Name=CAC29748.1;Note=Similar to M. tuberculosis Rv1009%2C conserved hypothetical protein%2C TR:O05594 (EMBL:AL123456) (362 aa)%3B Fasta score E(): 0%2C 82.3%25 identity in 361 aa overlap. The C-terminus is similar to a region conserved in many bacterial hypothetical proteins e.g. Streptomyces coelicolor SCE87.01C%2C hypothetical protein%2C TR:Q9RKD7 (EMBL:AL132674) (330 aa)%3B Fasta score E(): 3.2e-14%2C 33.8%25 identity in 225 aa overlap.%3B~C-terminus is similar to region of ML2030 and ML2151;gbkey=CDS;gene=ML0240;product=conserved hypothetical protein;protein_id=CAC29748.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	316026	316030	.	+	.	ID=id-ML0240;Parent=gene-ML0240;Note=possible RBS;gbkey=regulatory;gene=ML0240;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	316048	316968	.	+	.	ID=gene-ksgA;Name=ksgA;gbkey=Gene;gene=ksgA;gene_biotype=protein_coding;gene_synonym=ML0241
AL450380.1	EMBL	CDS	316048	316968	.	+	0	ID=cds-CAC29749.1;Parent=gene-ksgA;Dbxref=GOA:Q9CD52,InterPro:IPR001737,InterPro:IPR011530,InterPro:IPR020596,InterPro:IPR020598,InterPro:IPR023165,InterPro:IPR029063,NCBI_GP:CAC29749.1;Name=CAC29749.1;Note=EC_number%3D2.1.1.-%3B~Similar to M. tuberculosis ksgA%2C dimethyladenosine transferase%2C TR:O05595 (EMBL:AL123456) (317 aa)%3B Fasta score E(): 0%2C 85.0%25 identity in 294 aa overlap. Similar to many e.g. Escherichia coli ksgA%2C dimethyladenosine transferase%2C SW:KSGA_ECOLI (M68521) (273 aa)%3B Fasta score E(): 8.3e-23%2C 33.7%25 identity in 261 aa overlap. Contains Pfam match to entry PF00398 RrnaAD%2C Ribosomal RNA adenine dimethylases. Contains PS01131 Ribosomal RNA adenine dimethylases signature.;gbkey=CDS;gene=ksgA;product=putative dimethyladenosine transferase;protein_id=CAC29749.1;transl_table=11
AL450380.1	EMBL	sequence_feature	316153	316917	.	+	.	ID=id-ksgA;Note=Pfam match to entry PF00398 RrnaAD%2C Ribosomal RNA adenine dimethylases%2C score 151.60%2C E-value 2e-46;gbkey=misc_feature;gene=ksgA
AL450380.1	EMBL	sequence_feature	316225	316308	.	+	.	ID=id-ksgA-2;Note=PS01131 Ribosomal RNA adenine dimethylases signature;gbkey=misc_feature;gene=ksgA
AL450380.1	EMBL	gene	317042	317977	.	+	.	ID=gene-ML0242;Name=ML0242;gbkey=Gene;gene=ML0242;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	317042	317977	.	+	0	ID=cds-CAC29750.1;Parent=gene-ML0242;Dbxref=GOA:Q9CD51,InterPro:IPR004424,InterPro:IPR006204,InterPro:IPR013750,InterPro:IPR014721,InterPro:IPR020568,NCBI_GP:CAC29750.1;Name=CAC29750.1;Note=EC_number%3D2.7.1.-%3B~Similar to M. tuberculosis ipk%2C Rv1011%2C putative isopentenyl monophosphate kinase%2C SW:IPK_MYCTU (O05596) (306 aa)%3B Fasta score E(): 0%2C 87.5%25 identity in 303 aa overlap. Similar to many e.g. Escherichia coli isopentenyl monophosphate kinase%2C SW:IPK_ECOLI (P24209) (283 aa)%3B Fasta score E(): 1.3e-13%2C 35.6%25 identity in 202 aa overlap.;gbkey=CDS;gene=ML0242;product=putative isopentenyl monophosphate kinase;protein_id=CAC29750.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	318210	318215	.	+	.	ID=id-AL450380.1:318210..318215;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	318220	319854	.	+	.	ID=gene-ML0243;Name=ML0243;gbkey=Gene;gene=ML0243;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	318220	319854	.	+	0	ID=cds-CAC29751.1;Parent=gene-ML0243;Dbxref=GOA:Q9CD50,InterPro:IPR000873,InterPro:IPR020845,InterPro:IPR028154,UniProtKB/TrEMBL:Q9CD50,NCBI_GP:CAC29751.1;Name=CAC29751.1;Note=Similar to several putative acyl-CoA synthases from M.tuberculosis e.g. pks16%2C Rv1013%2C possible polyketide synthase%2C TR:O05598 (EMBL:AL123456) (544 aa)%3B Fasta score E(): 0%2C 82.2%25 identity in 544 aa overlap. Similar to domains of polyketide synthases e.g. Bacillus subtilis mycA%2C mycosubtilin synthetase%2C TR:Q9R9J1 (EMBL:AF184956) (3971 aa)%3B Fasta score E(): 0%2C 33.7%25 identity in 404 aa overlap. Contains Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme. Contains PS00455 Putative AMP-binding domain signature.%3B~Similar to ML0887%2C ML0100%2C ML0132%2C ML0138%2C ML1051%2C ML1234%2C ML1994%2C ML2358 and ML2546;gbkey=CDS;gene=ML0243;product=putative acyl-CoA synthetase;protein_id=CAC29751.1;transl_table=11
AL450380.1	EMBL	sequence_feature	318310	319623	.	+	.	ID=id-ML0243;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score -49.80%2C E-value 1.2e-12;gbkey=misc_feature;gene=ML0243
AL450380.1	EMBL	sequence_feature	318688	318723	.	+	.	ID=id-ML0243-2;Note=PS00455 Putative AMP-binding domain signature;gbkey=misc_feature;gene=ML0243
AL450380.1	EMBL	gene	319965	320564	.	-	.	ID=gene-pth;Name=pth;gbkey=Gene;gene=pth;gene_biotype=protein_coding;gene_synonym=ML0244
AL450380.1	EMBL	CDS	319965	320564	.	-	0	ID=cds-CAC29752.1;Parent=gene-pth;Dbxref=GOA:Q9CD49,InterPro:IPR001328,InterPro:IPR018171,NCBI_GP:CAC29752.1;Name=CAC29752.1;Note=Similar to M. tuberculosis pth%2C Rv1014c%2C peptidyl-tRNA hydrolase%2C SW:PTH_MYCTU (P96386) (191 aa)%3B Fasta score E(): 0%2C 77.7%25 identity in 188 aa overlap. Similar to many e.g. Escherichia coli pth%2C peptidyl-tRNA hydrolase%2C SW:PTH_ECOLI (P23932) (194 aa)%3B Fasta score E(): 3.7e-22%2C 37.2%25 identity in 188 aa overlap. Contains Pfam match to entry PF01195 Pept_tRNA_hydro%2C Peptidyl-tRNA hydrolase. Contains PS01196 Peptidyl-tRNA hydrolase signature 2.;gbkey=CDS;gene=pth;product=putative peptidyl-tRNA hydrolase;protein_id=CAC29752.1;transl_table=11
AL450380.1	EMBL	sequence_feature	319974	320534	.	-	.	ID=id-pth;Note=Pfam match to entry PF01195 Pept_tRNA_hydro%2C Peptidyl-tRNA hydrolase%2C score 297.90%2C E-value 1.2e-85;gbkey=misc_feature;gene=pth
AL450380.1	EMBL	sequence_feature	320178	320210	.	-	.	ID=id-pth-2;Note=PS01196 Peptidyl-tRNA hydrolase signature 2;gbkey=misc_feature;gene=pth
AL450380.1	EMBL	gene	320577	321224	.	-	.	ID=gene-rplY;Name=rplY;gbkey=Gene;gene=rplY;gene_biotype=protein_coding;gene_synonym=ML0245
AL450380.1	EMBL	CDS	320577	321224	.	-	0	ID=cds-CAC29753.1;Parent=gene-rplY;Dbxref=GOA:Q9CD48,InterPro:IPR001021,InterPro:IPR011035,InterPro:IPR020056,InterPro:IPR020057,InterPro:IPR029751,NCBI_GP:CAC29753.1;Name=CAC29753.1;Note=Similar to M. tuberculosis rplY%2C 50S ribosomal protein L25%2C SW:RL25_MYCTU (P96385) (215 aa)%3B Fasta score E(): 0%2C 73.9%25 identity in 218 aa overlap. Similar to many e.g. Escherichia coli rplY%2C 50S ribosomal protein L25%2C SW:RL25_ECOLI (P02426) (94 aa)%3B Fasta score E(): 0.00054%2C 33.7%25 identity in 89 aa overlap. Contains Pfam match to entry PF01386 Ribosomal_L25p%2C Ribosomal L25p family.;gbkey=CDS;gene=rplY;product=putative 50S ribosomal protein L25;protein_id=CAC29753.1;transl_table=11
AL450380.1	EMBL	sequence_feature	320940	321200	.	-	.	ID=id-rplY;Note=Pfam match to entry PF01386 Ribosomal_L25p%2C Ribosomal L25p family%2C score 149.60%2C E-value 5.4e-41;gbkey=misc_feature;gene=rplY
AL450380.1	EMBL	ribosome_entry_site	321232	321237	.	-	.	ID=id-AL450380.1:321232..321237;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	322399	323055	.	-	.	ID=gene-lpqT;Name=lpqT;gbkey=Gene;gene=lpqT;gene_biotype=protein_coding;gene_synonym=ML0246
AL450380.1	EMBL	CDS	322399	323055	.	-	0	ID=cds-CAC29754.1;Parent=gene-lpqT;Dbxref=GOA:Q9CD47,InterPro:IPR019674,NCBI_GP:CAC29754.1;Name=CAC29754.1;Note=Similar to M. tuberculosis lpqT%2C putative lipoprotein%2C SW:LPQT_MYCTU (P96384) (226 aa)%3B Fasta score E(): 0%2C 67.1%25 identity in 213 aa overlap. Also similar to M. tuberculosis MTC28%2C Rv0040c%2C proline rich 28 kDa antigen precursor%2C SW:PR28_MYCTU (P71697) (311 aa)%3B Fasta score E(): 1.3e-10%2C 33.3%25 identity in 159 aa overlap. Contains a probable N-terminal signal sequence. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.%3B~Similar to ML0031%2C except at N-terminus;gbkey=CDS;gene=lpqT;product=putative lipoprotein;protein_id=CAC29754.1;transl_table=11
AL450380.1	EMBL	sequence_feature	322984	323016	.	-	.	ID=id-lpqT;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=lpqT
AL450380.1	EMBL	gene	323092	323406	.	-	.	ID=gene-arsC;Name=arsC;gbkey=Gene;gene=arsC;gene_biotype=protein_coding;gene_synonym=ML0247
AL450380.1	EMBL	CDS	323092	323406	.	-	0	ID=cds-CAC29755.1;Parent=gene-arsC;Dbxref=InterPro:IPR006660,InterPro:IPR012336,UniProtKB/TrEMBL:Q9CD46,NCBI_GP:CAC29755.1;Name=CAC29755.1;Note=Similar to many e.g. Escherichia coli arsC%2C arsenate reductase%2C SW:ARC1_ECOLI (P08692) (141 aa)%3B Fasta score E(): 1.7e-07%2C 38.8%25 identity in 103 aa overlap. Similar to proteins which expand the substrate specificity of arsAB pump.;gbkey=CDS;gene=arsC;product=putative arsenate reductase;protein_id=CAC29755.1;transl_table=11
AL450380.1	EMBL	gene	323462	324445	.	-	.	ID=gene-prsA;Name=prsA;gbkey=Gene;gene=prsA;gene_biotype=protein_coding;gene_synonym=ML0248
AL450380.1	EMBL	CDS	323462	324445	.	-	0	ID=cds-CAC29756.1;Parent=gene-prsA;Dbxref=GOA:Q9CD45,InterPro:IPR000842,InterPro:IPR005946,InterPro:IPR029057,InterPro:IPR029099,NCBI_GP:CAC29756.1;Name=CAC29756.1;Note=Similar to M. tuberculosis prsA%2C ribose-phosphate pyrophosphokinase%2C TR:P96383 (EMBL:AL123456) (326 aa)%3B Fasta score E(): 0%2C 92.0%25 identity in 326 aa overlap. Similar to many e.g. Bacillus subtilis prs%2C ribose-phosphate pyrophosphokinase%2C SW:KPRS_BACSU (P14193) (317 aa)%3B Fasta score E(): 0%2C 45.8%25 identity in 323 aa overlap. Contains Pfam match to entry PF00156 Pribosyltran%2C Phosphoribosyl transferase domain. Contains PS00103 Purine/pyrimidine phosphoribosyl transferases signature.;gbkey=CDS;gene=prsA;product=putative ribose-phosphate pyrophosphokinase;protein_id=CAC29756.1;transl_table=11
AL450380.1	EMBL	sequence_feature	323594	324016	.	-	.	ID=id-prsA;Note=Pfam match to entry PF00156 Pribosyltran%2C Phosphoribosyl transferase domain%2C score 95.00%2C E-value 1.5e-24;gbkey=misc_feature;gene=prsA
AL450380.1	EMBL	sequence_feature	323729	323767	.	-	.	ID=id-prsA-2;Note=PS00103 Purine/pyrimidine phosphoribosyl transferases signature;gbkey=misc_feature;gene=prsA
AL450380.1	EMBL	ribosome_entry_site	324451	324454	.	-	.	ID=id-AL450380.1:324451..324454;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	324556	326034	.	-	.	ID=gene-glmU;Name=glmU;gbkey=Gene;gene=glmU;gene_biotype=protein_coding;gene_synonym=ML0249
AL450380.1	EMBL	CDS	324556	326034	.	-	0	ID=cds-CAC29757.1;Parent=gene-glmU;Dbxref=GOA:Q9CD44,InterPro:IPR001451,InterPro:IPR005882,InterPro:IPR011004,InterPro:IPR025877,InterPro:IPR029044,NCBI_GP:CAC29757.1;Name=CAC29757.1;Note=Similar to M. tuberculosis glmU%2C putative UDP-N-acetylglucosamine pyrophosphorylase%2C TR:P96382 (EMBL:AL123456) (495 aa)%3B Fasta score E(): 0%2C 82.1%25 identity in 492 aa overlap. Similar to many e.g. Neisseria gonorrhoeae glmU%2C UDP-N-acetylglucosamine pyrophosphorylase%2C SW:GLMU_NEIGO (Q50986) (456 aa)%3B Fasta score E(): 0%2C 37.4%25 identity in 462 aa overlap. Contains Pfam match to entry PF00483 NTP_transferase%2C Nucleotidyl transferase. Contains 5 Pfam matches to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats).;gbkey=CDS;gene=glmU;product=putative UDP-N-acetylglucosamine pyrophosphorylase;protein_id=CAC29757.1;transl_table=11
AL450380.1	EMBL	sequence_feature	324715	324768	.	-	.	ID=id-glmU;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 9.10%2C E-value 44;gbkey=misc_feature;gene=glmU
AL450380.1	EMBL	sequence_feature	324895	324948	.	-	.	ID=id-glmU-2;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 8.60%2C E-value 53;gbkey=misc_feature;gene=glmU
AL450380.1	EMBL	sequence_feature	325000	325053	.	-	.	ID=id-glmU-3;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 11.30%2C E-value 23;gbkey=misc_feature;gene=glmU
AL450380.1	EMBL	sequence_feature	325099	325152	.	-	.	ID=id-glmU-4;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 13.10%2C E-value 6.6;gbkey=misc_feature;gene=glmU
AL450380.1	EMBL	sequence_feature	325153	325206	.	-	.	ID=id-glmU-5;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 17.00%2C E-value 0.44;gbkey=misc_feature;gene=glmU
AL450380.1	EMBL	sequence_feature	325303	326013	.	-	.	ID=id-glmU-6;Note=Pfam match to entry PF00483 NTP_transferase%2C Nucleotidyl transferase%2C score -0.80%2C E-value 1.3e-07;gbkey=misc_feature;gene=glmU
AL450380.1	EMBL	ribosome_entry_site	326040	326044	.	-	.	ID=id-AL450380.1:326040..326044;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	326132	326203	.	-	.	ID=gene-glnT;Name=glnT;gbkey=Gene;gene=glnT;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	326132	326203	.	-	.	ID=rna-glnT;Parent=gene-glnT;Note=tRNA Gln anticodon TTG%2C Cove score 52.56;gbkey=tRNA;gene=glnT;product=tRNA-Gln
AL450380.1	EMBL	exon	326132	326203	.	-	.	ID=exon-glnT-1;Parent=rna-glnT;Note=tRNA Gln anticodon TTG%2C Cove score 52.56;gbkey=tRNA;gene=glnT;product=tRNA-Gln
AL450380.1	EMBL	pseudogene	326387	326995	.	+	.	ID=gene-ML0250;Name=ML0250;gbkey=Gene;gene=ML0250;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	326387	326995	.	+	0	ID=cds-ML0250;Parent=gene-ML0250;Note=Possible pseudogene of M. tuberculosis orthologue Rv1019 (Best blastx score 404);gbkey=CDS;gene=ML0250;product=transcriptional regulator (TetR/AcrR family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	327120	327945	.	-	.	ID=gene-ML0251;Name=ML0251;gbkey=Gene;gene=ML0251;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	327120	327945	.	-	0	ID=cds-ML0251;Parent=gene-ML0251;Note=Possible pseudogene similar to M. tuberculosis paralogue lysA (Best blastx score 114);gbkey=CDS;gene=ML0251;product=putative diaminopimelate decarboxylase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	328067	331741	.	+	.	ID=gene-mfd;Name=mfd;gbkey=Gene;gene=mfd;gene_biotype=protein_coding;gene_synonym=ML0252
AL450380.1	EMBL	CDS	328067	331741	.	+	0	ID=cds-CAC29760.1;Parent=gene-mfd;Dbxref=GOA:Q9CD43,InterPro:IPR001650,InterPro:IPR003711,InterPro:IPR004576,InterPro:IPR005118,InterPro:IPR011545,InterPro:IPR014001,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CD43,NCBI_GP:CAC29760.1;Name=CAC29760.1;Note=Similar to M. tuberculosis mfd%2C transcription-repair coupling factor%2C SW:MFD_MYCTU (P96380) (1234 aa)%3B Fasta score E(): 0%2C 84.3%25 identity in 1229 aa overlap. Similar to many e.g. Escherichia coli mfd%2C transcription-repair coupling factor%2C SW:MFD_ECOLI (P30958) (1148 aa)%3B Fasta score E(): 0%2C 38.1%25 identity in 1111 aa overlap. Contains Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain. Contains Pfam match to entry PF00270 DEAD%2C DEAD/DEAH box helicase.;gbkey=CDS;gene=mfd;product=putative transcription-repair coupling factor;protein_id=CAC29760.1;transl_table=11
AL450380.1	EMBL	sequence_feature	329996	330583	.	+	.	ID=id-mfd;Note=Pfam match to entry PF00270 DEAD%2C DEAD/DEAH box helicase%2C score 73.60%2C E-value 2.2e-22;gbkey=misc_feature;gene=mfd
AL450380.1	EMBL	sequence_feature	330692	330943	.	+	.	ID=id-mfd-2;Note=Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain%2C score 63.10%2C E-value 6.1e-15;gbkey=misc_feature;gene=mfd
AL450380.1	EMBL	pseudogene	331780	332529	.	+	.	ID=gene-ML0253;Name=ML0253;gbkey=Gene;gene=ML0253;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	331780	332529	.	+	0	ID=cds-ML0253;Parent=gene-ML0253;Note=Possible pseudogene of M. tuberculosis orthologue Rv1021 (Best blastx score 252);gbkey=CDS;gene=ML0253;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	332923	333664	.	+	.	ID=gene-lpqU;Name=lpqU;gbkey=Gene;gene=lpqU;gene_biotype=pseudogene;gene_synonym=ML0254;pseudo=true
AL450380.1	EMBL	CDS	332923	333664	.	+	0	ID=cds-lpqU;Parent=gene-lpqU;Note=Possible pseudogene of M. tuberculosis orthologue lpqU (Best blastx score 224);gbkey=CDS;gene=lpqU;product=lipoprotein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	333730	333734	.	+	.	ID=id-AL450380.1:333730..333734;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	333751	335094	.	+	.	ID=gene-eno;Name=eno;gbkey=Gene;gene=eno;gene_biotype=protein_coding;gene_synonym=ML0255
AL450380.1	EMBL	CDS	333751	335094	.	+	0	ID=cds-CAC29763.1;Parent=gene-eno;Dbxref=GOA:Q9CD42,InterPro:IPR000941,InterPro:IPR020809,InterPro:IPR020810,InterPro:IPR020811,InterPro:IPR029017,InterPro:IPR029065,NCBI_GP:CAC29763.1;Name=CAC29763.1;Note=Similar to M. tuberculosis eno%2C putative enolase%2C SW:ENO_MYCTU (P96377) (429 aa)%3B Fasta score E(): 0%2C 88.8%25 identity in 429 aa overlap. Similar to many e.g. Bacillus subtilis eno%2C enolase (2-phosphoglycerate dehydratase)%2C SW:ENO_BACSU (P37869) (430 aa)%3B Fasta score E(): 0%2C 58.8%25 identity in 425 aa overlap. Contains Pfam match to entry PF00113 enolase%2C Enol-ase. Contains PS00164 Enolase signature.;gbkey=CDS;gene=eno;product=putative enolase;protein_id=CAC29763.1;transl_table=11
AL450380.1	EMBL	sequence_feature	333808	335076	.	+	.	ID=id-eno;Note=Pfam match to entry PF00113 enolase%2C Enol-ase%2C score 773.50%2C E-value 8.3e-229;gbkey=misc_feature;gene=eno
AL450380.1	EMBL	sequence_feature	334798	334839	.	+	.	ID=id-eno-2;Note=PS00164 Enolase signature;gbkey=misc_feature;gene=eno
AL450380.1	EMBL	ribosome_entry_site	335108	335111	.	+	.	ID=id-AL450380.1:335108..335111;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	335129	335812	.	+	.	ID=gene-ML0256;Name=ML0256;gbkey=Gene;gene=ML0256;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	335129	335812	.	+	0	ID=cds-CAC29764.1;Parent=gene-ML0256;Dbxref=GOA:Q9CD41,InterPro:IPR007060,UniProtKB/TrEMBL:Q9CD41,NCBI_GP:CAC29764.1;Name=CAC29764.1;Note=Similar to M. tuberculosis Rv1024%2C hypothetical protein%2C TR:P96376 (EMBL:AL123456) (228 aa)%3B Fasta score E(): 0%2C 70.5%25 identity in 220 aa overlap. Contains hydrophobic%2C possible membrane-spanning region.;gbkey=CDS;gene=ML0256;product=putative membrane protein;protein_id=CAC29764.1;transl_table=11
AL450380.1	EMBL	gene	335805	336308	.	+	.	ID=gene-ML0257;Name=ML0257;gbkey=Gene;gene=ML0257;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	335805	336308	.	+	0	ID=cds-CAC29765.1;Parent=gene-ML0257;Dbxref=InterPro:IPR007511,UniProtKB/TrEMBL:Q9CD40,NCBI_GP:CAC29765.1;Name=CAC29765.1;Note=Similar to M. tuberculosis Rv1025%2C hypothetical protein%2C TR:P96375 (EMBL:AL123456) (155 aa)%3B Fasta score E(): 0%2C 85.1%25 identity in 154 aa overlap. Also similar to hypothetical proteins from Thermotoga maritima e.g. TM1078%2C hypothetical protein%2C TR:Q9X0G7 (EMBL:AE001768) (170 aa)%3B Fasta score E(): 2.4e-09%2C 32.6%25 identity in 172 aa overlap.;gbkey=CDS;gene=ML0257;product=conserved hypothetical protein;protein_id=CAC29765.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	336291	336295	.	+	.	ID=id-ML0257;Parent=gene-ML0257;Note=possible RBS;gbkey=regulatory;gene=ML0257;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	336305	337258	.	+	.	ID=gene-ML0258;Name=ML0258;gbkey=Gene;gene=ML0258;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	336305	337258	.	+	0	ID=cds-CAC29766.1;Parent=gene-ML0258;Dbxref=InterPro:IPR003695,UniProtKB/TrEMBL:Q7AQL0,NCBI_GP:CAC29766.1;Name=CAC29766.1;Note=Similar to M. tuberculosis Rv1026%2C hypothetical protein%2C TR:P96374 (EMBL:AL123456) (319 aa)%3B Fasta score E(): 0%2C 77.6%25 identity in 321 aa overlap. Similar to many bacterial hypothetical proteins and shows weak similarity to N-terminal half of Escherichia coli ppx%2C exopolyphosphatase%2C SW:PPX_ECOLI (P29014) (512 aa)%3B Fasta score E(): 6.8e-07%2C 25.3%25 identity in 297 aa overlap.%3B~Shows weak similarity to ML2434;gbkey=CDS;gene=ML0258;product=hypothetical protein;protein_id=CAC29766.1;transl_table=11
AL450380.1	EMBL	pseudogene	337531	339287	.	+	.	ID=gene-ML0259;Name=ML0259;gbkey=Gene;gene=ML0259;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	337531	339287	.	+	0	ID=cds-ML0259;Parent=gene-ML0259;Note=Possible pseudogene similar to M. tuberculosis paralogue mmpL4 (Best blastx score 308);gbkey=CDS;gene=ML0259;product=conserved large membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	339324	340503	.	-	.	ID=gene-ML0260;Name=ML0260;gbkey=Gene;gene=ML0260;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	339324	340503	.	-	0	ID=cds-ML0260;Parent=gene-ML0260;Note=Possible pseudogene of M. tuberculosis orthologue Rv1032c (Best blastx score 284);gbkey=CDS;gene=ML0260;product=sensor histidine kinase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	340549	341173	.	-	.	ID=gene-ML0261;Name=ML0261;gbkey=Gene;gene=ML0261;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	340549	341173	.	-	0	ID=cds-ML0261;Parent=gene-ML0261;Note=Possible pseudogene of M. tuberculosis orthologue Rv1033c (Best blastx score 192);gbkey=CDS;gene=ML0261;product=two-component response regulator (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	341956	342250	.	-	.	ID=gene-ML0262;Name=ML0262;gbkey=Gene;gene=ML0262;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	341956	342250	.	-	0	ID=cds-ML0262;Parent=gene-ML0262;Note=Possible pseudogene of M. tuberculosis orthologue Rv1038c (Best blastx score 310);gbkey=CDS;gene=ML0262;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	343372	343984	.	-	.	ID=gene-PE-2;Name=PE;gbkey=Gene;gene=PE;gene_biotype=pseudogene;gene_synonym=ML0263;pseudo=true
AL450380.1	EMBL	CDS	343372	343984	.	-	0	ID=cds-PE-2;Parent=gene-PE-2;Note=Possible pseudogene of M. tuberculosis orthologue Rv1040c%2C PE (Best blastx score 122);gbkey=CDS;gene=PE;product=PE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	344340	344413	.	+	.	ID=gene-leuX;Name=leuX;gbkey=Gene;gene=leuX;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	344340	344413	.	+	.	ID=rna-leuX;Parent=gene-leuX;Note=tRNA Leu anticodon TAA%2C Cove score 63.13;gbkey=tRNA;gene=leuX;product=tRNA-Leu
AL450380.1	EMBL	exon	344340	344413	.	+	.	ID=exon-leuX-1;Parent=rna-leuX;Note=tRNA Leu anticodon TAA%2C Cove score 63.13;gbkey=tRNA;gene=leuX;product=tRNA-Leu
AL450380.1	EMBL	pseudogene	344904	345275	.	-	.	ID=gene-ML0264;Name=ML0264;gbkey=Gene;gene=ML0264;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	344904	345275	.	-	0	ID=cds-ML0264;Parent=gene-ML0264;Note=Possible pseudogene of M. tuberculosis orthologue Rv2775 (Best blastx score 95);gbkey=CDS;gene=ML0264;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	345708	345920	.	+	.	ID=gene-ML0265;Name=ML0265;gbkey=Gene;gene=ML0265;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	345708	345920	.	+	0	ID=cds-CAC29773.1;Parent=gene-ML0265;Dbxref=UniProtKB/TrEMBL:Q7AQK9,NCBI_GP:CAC29773.1;Name=CAC29773.1;Note=Improbable CDS suggested by GC frameplot. Possibly the remains of a disrupted gene.;gbkey=CDS;gene=ML0265;product=hypothetical protein;protein_id=CAC29773.1;transl_table=11
AL450380.1	EMBL	pseudogene	346709	347435	.	+	.	ID=gene-ML0266;Name=ML0266;gbkey=Gene;gene=ML0266;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	346709	347435	.	+	0	ID=cds-ML0266;Parent=gene-ML0266;Note=Possible pseudogene of M. tuberculosis orthologue Rv1056 (Best blastx score 289);gbkey=CDS;gene=ML0266;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	348453	349480	.	+	.	ID=id-AL450380.1:348453..349480;Note=REPLEP region 2%2C 5'-end most similar to REPLEP 5 and 6%3B 3'-end most similar to REPLEP 11;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	348535	349414	.	+	.	ID=id-AL450380.1:348535..349414;Note=Dispersed repeat%2C REPLEP%2C copy 2;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	349415	349442	.	+	.	ID=id-AL450380.1:349415..349442;Note=28 bp subsequence of 45 bp REPLEP-associated sequence;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	350965	351892	.	-	.	ID=gene-ackA;Name=ackA;gbkey=Gene;gene=ackA;gene_biotype=pseudogene;gene_synonym=ML0267;pseudo=true
AL450380.1	EMBL	CDS	350965	351892	.	-	0	ID=cds-ackA;Parent=gene-ackA;Note=Possible pseudogene of M. tuberculosis orthologue ackA (Best blastx score 257);gbkey=CDS;gene=ackA;product=acetate kinase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	351893	352999	.	-	.	ID=gene-pta;Name=pta;gbkey=Gene;gene=pta;gene_biotype=pseudogene;gene_synonym=ML0268;pseudo=true
AL450380.1	EMBL	CDS	351893	352999	.	-	0	ID=cds-pta;Parent=gene-pta;Note=Possible pseudogene of M. tuberculosis orthologue pta (Best blastx score 310);gbkey=CDS;gene=pta;product=phosphate acetyltransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	353007	354017	.	-	.	ID=gene-ML0269;Name=ML0269;gbkey=Gene;gene=ML0269;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	353007	354017	.	-	0	ID=cds-CAC29777.1;Parent=gene-ML0269;Dbxref=GOA:Q7AQK8,InterPro:IPR011251,InterPro:IPR019944,InterPro:IPR019945,UniProtKB/TrEMBL:Q7AQK8,NCBI_GP:CAC29777.1;Name=CAC29777.1;Note=Similar to M. tuberculosis Rv0407%2C probable coenzyme F420-dependent enzyme%2C TR:P96253 (EMBL:AL123456) (336 aa)%3B Fasta score E(): 0%2C 89.3%25 identity in 336 aa overlap. Similar to mycobacterial G6PDHs e.g. Mycobacterium avium fgd%2C F420-dependent glucose-6-phosphate dehydrogenase%2C TR:Q9XC15 (EMBL:AF152394) (336 aa)%3B Fasta score E(): 0%2C 88.4%25 identity in 336 aa overlap. previously sequenced as TR:O69589 (EMBL:AL023514) (336 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 336 aa overlap.%3B~Shows weak similarity to ML0131;gbkey=CDS;gene=ML0269;product=putative F420-dependent glucose-6-phosphate dehydrogenase;protein_id=CAC29777.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	354030	354034	.	-	.	ID=id-AL450380.1:354030..354034;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	354105	354860	.	+	.	ID=gene-ML0270;Name=ML0270;gbkey=Gene;gene=ML0270;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	354105	354860	.	+	0	ID=cds-CAC29778.1;Parent=gene-ML0270;Dbxref=InterPro:IPR001279,UniProtKB/TrEMBL:Q7AQK7,NCBI_GP:CAC29778.1;Name=CAC29778.1;Note=Similar to M. tuberculosis Rv0406c%2C hypothetical protein%2C TR:O86336 (EMBL:AL123456) (272 aa)%3B Fasta score E(): 0%2C 74.9%25 identity in 243 aa overlap. Shows similarity to members of the metallo-beta-lactamase superfamily. Conserved in mycobacteria e.g. Mycobacterium avium bllP%2C beta-lactamase-like protein%2C TR:Q9XC16 (EMBL:AF152394) (247 aa)%3B Fasta score E(): 0%2C 73.7%25 identity in 243 aa overlap. Previously sequenced as TR:O69590 (EMBL:AL023514) (251 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 251 aa overlap. Contains Pfam match to entry PF00753 lactamase_B%2C Metallo-beta-lactamase superfamily.;gbkey=CDS;gene=ML0270;product=conserved hypothetical protein;protein_id=CAC29778.1;transl_table=11
AL450380.1	EMBL	sequence_feature	354150	354785	.	+	.	ID=id-ML0270;Note=Pfam match to entry PF00753 lactamase_B%2C Metallo-beta-lactamase superfamily%2C score 145.40%2C E-value 9.7e-40;gbkey=misc_feature;gene=ML0270
AL450380.1	EMBL	gene	354849	355220	.	-	.	ID=gene-ML0271;Name=ML0271;gbkey=Gene;gene=ML0271;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	354849	355220	.	-	0	ID=cds-CAC29779.1;Parent=gene-ML0271;Dbxref=InterPro:IPR021414,UniProtKB/TrEMBL:Q9CCX5,NCBI_GP:CAC29779.1;Name=CAC29779.1;Note=Similar to M. tuberculosis Rv0401%2C putative membrane protein%2C TR:P95210 (EMBL:AL123456) (123 aa)%3B Fasta score E(): 1.9e-32%2C 66.9%25 identity in 121 aa overlap. Similar to region of Arabidopsis thaliana F27F5.3%2C hypothetical protein%2C TR:AAF69175 (EMBL:AC007915) (261 aa)%3B Fasta score E(): 1.5e-06%2C 30.8%25 identity in 120 aa overlap. Previously sequenced as TR:O69591 (EMBL:AL023514) (122 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 122 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0271;product=putative membrane protein;protein_id=CAC29779.1;transl_table=11
AL450380.1	EMBL	pseudogene	355303	355922	.	+	.	ID=gene-ML0272;Name=ML0272;gbkey=Gene;gene=ML0272;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	355303	355922	.	+	0	ID=cds-ML0272;Parent=gene-ML0272;Note=Possible oxidoreductase pseudogene. Similar to several M. tuberculosis genes e.g. Rv1941%2C Rv2214c%2C Rv2857c (Best blastx score 134);gbkey=CDS;gene=ML0272;product=putative oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	355941	356489	.	+	.	ID=gene-fadE7;Name=fadE7;gbkey=Gene;gene=fadE7;gene_biotype=pseudogene;gene_synonym=ML0273;pseudo=true
AL450380.1	EMBL	CDS	355941	356489	.	+	0	ID=cds-fadE7;Parent=gene-fadE7;Note=Possible pseudogene of M. tuberculosis orthologue fadE7 (Best blastx score 140);gbkey=CDS;gene=fadE7;product=acyl-CoA dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	356520	356618	.	+	.	ID=gene-ML0274;Name=ML0274;gbkey=Gene;gene=ML0274;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	356520	356618	.	+	0	ID=cds-ML0274;Parent=gene-ML0274;Note=Possible pseudogene of M. tuberculosis orthologue Rv0398c (Best blastx score 86);gbkey=CDS;gene=ML0274;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	357557	358777	.	-	.	ID=gene-metZ;Name=metZ;gbkey=Gene;gene=metZ;gene_biotype=protein_coding;gene_synonym=ML0275
AL450380.1	EMBL	CDS	357557	358777	.	-	0	ID=cds-CAC29783.1;Parent=gene-metZ;Dbxref=GOA:Q9CCX4,InterPro:IPR000277,InterPro:IPR006234,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q9CCX4,NCBI_GP:CAC29783.1;Name=CAC29783.1;Note=EC_number%3D4.2.99.-%3B~Similar to M. tuberculosis metZ%2C Rv0391%2C o-succinylhomoserine sulfhydrylase%2C TR:P95199 (EMBL:AL123456) (406 aa)%3B Fasta score E(): 0%2C 87.9%25 identity in 406 aa overlap. Similar to many e.g. Pseudomonas aeruginosa metZ%2C o-succinylhomoserine sulfhydrylase%2C SW:METZ_PSEAE (P55218) (403 aa)%3B Fasta score E(): 0%2C 44.3%25 identity in 406 aa overlap. Previously sequenced as TR:O69592 (EMBL:AL023514) (426 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 406 aa overlap. Contains Pfam match to entry PF01053 Cys_Met_Meta_PP%2C Cys/Met metabolism PLP-dependent enzyme.%3B~Similar to ML2394;gbkey=CDS;gene=metZ;product=putative o-succinylhomoserine sulfhydrylase;protein_id=CAC29783.1;transl_table=11
AL450380.1	EMBL	sequence_feature	357560	358720	.	-	.	ID=id-metZ;Note=Pfam match to entry PF01053 Cys_Met_Meta_PP%2C Cys/Met metabolism PLP-dependent enzyme%2C score 638.40%2C E-value 3.8e-188;gbkey=misc_feature;gene=metZ
AL450380.1	EMBL	ribosome_entry_site	358789	358792	.	-	.	ID=id-AL450380.1:358789..358792;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	358834	359277	.	-	.	ID=gene-ML0276;Name=ML0276;gbkey=Gene;gene=ML0276;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	358834	359277	.	-	0	ID=cds-CAC29784.1;Parent=gene-ML0276;Dbxref=InterPro:IPR001763,UniProtKB/TrEMBL:Q7AQK6,NCBI_GP:CAC29784.1;Name=CAC29784.1;Note=Similar to M. tuberculosis Rv0390%2C hypothetical protein%2C TR:P95198 (AL123456) (140 aa)%3B Fasta score E(): 0%2C 79.0%25 identity in 138 aa overlap. Also similar to Rickettsia prowazekii RP600%2C hypothetical protein%2C TR:Q9ZCV8 (EMBL:AJ235272) (123 aa)%3B Fasta score E(): 8.6e-05%2C 35.1%25 identity in 134 aa overlap. Previously sequenced as TR:O69593 (EMBL:AL023514) (147 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 147 aa overlap.;gbkey=CDS;gene=ML0276;product=conserved hypothetical protein;protein_id=CAC29784.1;transl_table=11
AL450380.1	EMBL	pseudogene	360202	360638	.	+	.	ID=gene-ML0277;Name=ML0277;gbkey=Gene;gene=ML0277;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	360202	360638	.	+	0	ID=cds-ML0277;Parent=gene-ML0277;Note=Possible pseudogene similar to M. tuberculosis PPE-family proteins (Best blastx score 74);gbkey=CDS;gene=ML0277;product=PPE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	360751	361125	.	+	.	ID=gene-ML0278;Name=ML0278;gbkey=Gene;gene=ML0278;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	360751	361125	.	+	0	ID=cds-ML0278;Parent=gene-ML0278;Note=Possible pseudogene similar to M. tuberculosis paralogue Rv0387c (Best blastx score 97);gbkey=CDS;gene=ML0278;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	361297	361953	.	-	.	ID=gene-ML0279;Name=ML0279;gbkey=Gene;gene=ML0279;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	361297	361953	.	-	0	ID=cds-CAC29787.1;Parent=gene-ML0279;Dbxref=InterPro:IPR006683,InterPro:IPR029069,UniProtKB/TrEMBL:Q7AQK5,NCBI_GP:CAC29787.1;Name=CAC29787.1;Note=Similar to M. tuberculosis Rv0356c%2C hypothetical protein%2C TR:O06307 (EMBL:AL123456) (214 aa)%3B Fasta score E(): 0%2C 73.4%25 identity in 214 aa overlap. Previously sequenced as TR:O69594 (EMBL:AL023514) (218 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 218 aa overlap.;gbkey=CDS;gene=ML0279;product=conserved hypothetical protein;protein_id=CAC29787.1;transl_table=11
AL450380.1	EMBL	gene	361950	363248	.	-	.	ID=gene-purA;Name=purA;gbkey=Gene;gene=purA;gene_biotype=protein_coding;gene_synonym=ML0280
AL450380.1	EMBL	CDS	361950	363248	.	-	0	ID=cds-CAC29788.1;Parent=gene-purA;Dbxref=GOA:O69595,InterPro:IPR001114,InterPro:IPR018220,InterPro:IPR027417,NCBI_GP:CAC29788.1;Name=CAC29788.1;Note=Similar to M. tuberculosis purA%2C Rv0357c%2C adenylosuccinate synthase%2C SW:PURA_MYCTU (O08381) (432 aa)%3B Fasta score E(): 0%2C 87.9%25 identity in 431 aa overlap. Similar to many e.g. Escherichia coli purA%2C adenylosuccinate synthase%2C SW:PURA_ECOLI (P12283) (431 aa)%3B Fasta score E(): 0%2C 51.1%25 identity in 425 aa overlap. Previously sequenced as SW:PURA_MYCLE (O69595) (432 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 432 aa overlap. Contains Pfam match to entry PF00709 Adenylsucc_synt%2C Adenylosuccinate synthetase. Contains PS00513 Adenylosuccinate synthetase active site. Contains PS01266 Adenylosuccinate synthetase GTP-binding site.;gbkey=CDS;gene=purA;product=putative adenylosuccinate synthase;protein_id=CAC29788.1;transl_table=11
AL450380.1	EMBL	sequence_feature	362070	363236	.	-	.	ID=id-purA;Note=Pfam match to entry PF00709 Adenylsucc_synt%2C Adenylosuccinate synthetase%2C score 729.00%2C E-value 2.1e-215;gbkey=misc_feature;gene=purA
AL450380.1	EMBL	sequence_feature	362820	362855	.	-	.	ID=id-purA-2;Note=PS00513 Adenylosuccinate synthetase active site;gbkey=misc_feature;gene=purA
AL450380.1	EMBL	sequence_feature	363198	363221	.	-	.	ID=id-purA-3;Note=PS01266 Adenylosuccinate synthetase GTP-binding site;gbkey=misc_feature;gene=purA
AL450380.1	EMBL	ribosome_entry_site	361960	361964	.	-	.	ID=id-purA-4;Parent=gene-purA;Note=possible RBS;gbkey=regulatory;gene=purA;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	ribosome_entry_site	363423	363427	.	+	.	ID=id-AL450380.1:363423..363427;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	363432	364121	.	+	.	ID=gene-ML0281;Name=ML0281;gbkey=Gene;gene=ML0281;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	363432	364121	.	+	0	ID=cds-CAC29789.1;Parent=gene-ML0281;Dbxref=UniProtKB/TrEMBL:Q7AQK4,NCBI_GP:CAC29789.1;Name=CAC29789.1;Note=Similar to M. tuberculosis Rv0358%2C hypothetical protein%2C TR:O06308 (EMBL:AL123456) (215 aa)%3B Fasta score E(): 0%2C 62.4%25 identity in 229 aa overlap. Previously sequenced as TR:O69596 (EMBL:AL023514) (229 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 229 aa overlap.;gbkey=CDS;gene=ML0281;product=conserved hypothetical protein;protein_id=CAC29789.1;transl_table=11
AL450380.1	EMBL	pseudogene	364131	364909	.	+	.	ID=gene-ML0282;Name=ML0282;gbkey=Gene;gene=ML0282;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	364131	364909	.	+	0	ID=cds-ML0282;Parent=gene-ML0282;Note=Possible pseudogene of M. tuberculosis orthologue Rv0359 (Best blastx score 161);gbkey=CDS;gene=ML0282;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	364916	365722	.	+	.	ID=gene-ML0283;Name=ML0283;gbkey=Gene;gene=ML0283;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	364916	365722	.	+	0	ID=cds-CAC29791.1;Parent=gene-ML0283;Dbxref=GOA:Q9CCX3,InterPro:IPR002524,InterPro:IPR027469,UniProtKB/TrEMBL:Q9CCX3,NCBI_GP:CAC29791.1;Name=CAC29791.1;Note=Similar to many cation-efflux transporter components e.g. Alcaligenes eutrophus czcD%2C cobalt-zinc-cadmium resistance protein%2C SW:CZCD_ALCEU (P13512) (316 aa)%3B Fasta score E(): 3.8e-22%2C 36.4%25 identity in 209 aa overlap. Previously sequenced as TR:O69597 (EMBL:AL023514) (256 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 256 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions. Beyond codon 220 (approx.) GC frameplot and codon useage plots indicate a possible frame change. Similarity to characterised transporter components ends at this point. This suggests that the ORF may have suffered a disruption and therefore not encode a functional product. Contains Pfam match to entry PF01545 Cation_efflux%2C Cation efflux family.;gbkey=CDS;gene=ML0283;product=putative cation-efflux transporter component;protein_id=CAC29791.1;transl_table=11
AL450380.1	EMBL	sequence_feature	365174	365719	.	+	.	ID=id-ML0283;Note=Pfam match to entry PF01545 Cation_efflux%2C Cation efflux family%2C score 17.10%2C E-value 0.0001;gbkey=misc_feature;gene=ML0283
AL450380.1	EMBL	gene	365860	366273	.	-	.	ID=gene-ML0284;Name=ML0284;gbkey=Gene;gene=ML0284;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	365860	366273	.	-	0	ID=cds-CAC29792.1;Parent=gene-ML0284;Dbxref=InterPro:IPR014487,UniProtKB/TrEMBL:Q7AQK3,NCBI_GP:CAC29792.1;Name=CAC29792.1;Note=Similar to M. tuberculosis Rv0360c%2C hypothetical protein%2C TR:O06310 (EMBL:AL123456) (145 aa)%3B Fasta score E(): 0%2C 85.4%25 identity in 137 aa overlap and Streptomyces coelicolor SCH10.25C%2C hypothetical protein%2C TR:Q9X8R4 (EMBL:AL049754) (143 aa)%3B Fasta score E(): 8.2e-27%2C 56.2%25 identity in 130 aa overlap. Previously sequenced as TR:O69598 (EMBL:AL023514) (137 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 137 aa overlap.;gbkey=CDS;gene=ML0284;product=conserved hypothetical protein;protein_id=CAC29792.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	366277	366283	.	-	.	ID=id-AL450380.1:366277..366283;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	ribosome_entry_site	366374	366378	.	+	.	ID=id-AL450380.1:366374..366378;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	366385	367263	.	+	.	ID=gene-ML0285;Name=ML0285;gbkey=Gene;gene=ML0285;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	366385	367263	.	+	0	ID=cds-CAC29793.1;Parent=gene-ML0285;Dbxref=UniProtKB/TrEMBL:Q7AQK2,NCBI_GP:CAC29793.1;Name=CAC29793.1;Note=Similar to M. tuberculosis Rv0361%2C possible membrane protein%2C TR:O06311 (EMBL:AL123456) (275 aa)%3B Fasta score E(): 0%2C 58.6%25 identity in 292 aa overlap. Previously sequenced as TR:O69599 (EMBL:AL023514) (292 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 292 aa overlap. Contains hydrophobic%2C possible membrane-spanning region.;gbkey=CDS;gene=ML0285;product=putative membrane protein;protein_id=CAC29793.1;transl_table=11
AL450380.1	EMBL	gene	367279	368316	.	-	.	ID=gene-fba;Name=fba;gbkey=Gene;gene=fba;gene_biotype=protein_coding;gene_synonym=ML0286
AL450380.1	EMBL	CDS	367279	368316	.	-	0	ID=cds-CAC29794.1;Parent=gene-fba;Dbxref=GOA:O69600,InterPro:IPR000771,InterPro:IPR006411,InterPro:IPR013785,NCBI_GP:CAC29794.1;Name=CAC29794.1;Note=Similar to M. tuberculosis fba%2C Rv0363c%2C fructose bisphosphate aldolase%2C SW:ALF_MYCTU (O06313) (344 aa)%3B Fasta score E(): 0%2C 87.7%25 identity in 342 aa overlap. Similar to many e.g. Corynebacterium glutamicum%2C fructose bisphosphate aldolase%2C SW:ALF_CORGL (P19537) (343 aa)%3B Fasta score E(): 0%2C 72.8%25 identity in 342 aa overlap. Previously sequenced as SW:ALF_MYCLE (O69600) (345 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 345 aa overlap. Contains Pfam match to entry PF01116 F_bP_aldolase%2C Fructose-bisphosphate aldolase class-II. Contains PS00806 Fructose-bisphosphate aldolase class-II signature 2. Contains PS00602 Fructose-bisphosphate aldolase class-II signature 1.;gbkey=CDS;gene=fba;product=putative fructose bisphosphate aldolase;protein_id=CAC29794.1;transl_table=11
AL450380.1	EMBL	sequence_feature	367294	368304	.	-	.	ID=id-fba;Note=Pfam match to entry PF01116 F_bP_aldolase%2C Fructose-bisphosphate aldolase class-II%2C score 484.30%2C E-value 9.4e-142;gbkey=misc_feature;gene=fba
AL450380.1	EMBL	sequence_feature	367810	367845	.	-	.	ID=id-fba-2;Note=PS00806 Fructose-bisphosphate aldolase class-II signature 2;gbkey=misc_feature;gene=fba
AL450380.1	EMBL	sequence_feature	368026	368061	.	-	.	ID=id-fba-3;Note=PS00602 Fructose-bisphosphate aldolase class-II signature 1;gbkey=misc_feature;gene=fba
AL450380.1	EMBL	ribosome_entry_site	368324	368330	.	-	.	ID=id-AL450380.1:368324..368330;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	368449	369117	.	+	.	ID=gene-ML0287;Name=ML0287;gbkey=Gene;gene=ML0287;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	368449	369117	.	+	0	ID=cds-CAC29795.1;Parent=gene-ML0287;Dbxref=GOA:O69601,InterPro:IPR015414,NCBI_GP:CAC29795.1;Name=CAC29795.1;Note=Similar to M. tuberculosis Rv0364%2C hypothetical protein%2C SW:Y364_MYCTU (O06314) (227 aa)%3B Fasta score E(): 0%2C 66.1%25 identity in 227 aa overlap. Similar to many dedA-family proteins e.g. Streptomyces coelicolor SCE9.18C%2C possible membrane protein%2C TR:Q9X8J1 (EMBL:AL049841) (303 aa)%3B Fasta score E(): 0%2C 42.8%25 identity in 201 aa overlap. Previously sequenced as TR:O69601 (EMBL:AL023514) (222 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 222 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions. Contains Pfam match to entry PF00597 DedA%2C DedA family.;gbkey=CDS;gene=ML0287;product=putative membrane protein;protein_id=CAC29795.1;transl_table=11
AL450380.1	EMBL	sequence_feature	368536	369018	.	+	.	ID=id-ML0287;Note=Pfam match to entry PF00597 DedA%2C DedA family%2C score 99.60%2C E-value 6e-26;gbkey=misc_feature;gene=ML0287
AL450380.1	EMBL	repeat_region	369095	369127	.	+	.	ID=id-AL450380.1:369095..369127;Note=33 bp sequence found at 5'-end of copies 2 and 7 of LEPREP;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	369128	371510	.	+	.	ID=id-AL450380.1:369128..371510;Note=Dispersed repeat%2C LEPREP%2C copy 2;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	369473	369612	.	+	.	ID=gene-ML0288;Name=ML0288;gbkey=Gene;gene=ML0288;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	369473	369612	.	+	0	ID=cds-ML0288;Parent=gene-ML0288;Note=Similar to Pseudomonas putida transposase tnpa1 TR:Q9R9U9 (EMBL:AJ245436) (355 aa) fasta scores: E(): 3.4e-05%2C 47.8%25 id in 46 aa%2C and to Agrobacterium tumefaciens transposase TR:Q44454 (EMBL:Z18270) (366 aa) fasta scores: E(): 0.00026%2C 41.3%25 id in 46 aa;gbkey=CDS;gene=ML0288;pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	369817	370960	.	+	.	ID=gene-ML0289;Name=ML0289;gbkey=Gene;gene=ML0289;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	369817	370960	.	+	0	ID=cds-ML0289;Parent=gene-ML0289;Note=Similar to many e.g. Cryphonectria parasitica (Chesnut blight fungus) putative maturase TR:AAF27656 (EMBL:AF218567) (778 aa) fasta scores: E(): 7.8e-11%2C 29.2%25 id in 216 aa;gbkey=CDS;gene=ML0289;product=putative group II intron maturase-related protein;pseudo=true;transl_table=11
AL450380.1	EMBL	stem_loop	370444	370497	.	+	.	ID=id-ML0289;gbkey=stem_loop;gene=ML0289;pseudo=true
AL450380.1	EMBL	pseudogene	371225	371323	.	+	.	ID=gene-ML0290;Name=ML0290;gbkey=Gene;gene=ML0290;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	371225	371323	.	+	0	ID=cds-ML0290;Parent=gene-ML0290;Note=Similar to Agrobacterium tumefaciens transposase TR:Q44454 (EMBL:Z18270) (366 aa) fasta scores: E(): 0.0002%2C 51.5%25 id in 33 aa%2C and to Pseudomonas putida transposase tnpa1 TR:Q9R9U9 (EMBL:AJ245436) (355 aa) fasta scores: E(): 0.00088%2C 48.5%25 id in 33 aa;gbkey=CDS;gene=ML0290;pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	371511	371531	.	+	.	ID=id-AL450380.1:371511..371531;Note=21 bp sequence found at 3'-ends of copies 2%2C 3%2C 4 and 6 of LEPREP;gbkey=repeat_region
AL450380.1	EMBL	gene	372034	372426	.	-	.	ID=gene-ML0291;Name=ML0291;gbkey=Gene;gene=ML0291;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	372034	372426	.	-	0	ID=cds-CAC29799.1;Parent=gene-ML0291;Dbxref=UniProtKB/TrEMBL:Q7AQK1,NCBI_GP:CAC29799.1;Name=CAC29799.1;Note=Unknown function. Previously sequenced as TR:O69603 (EMBL:AL023514) (130 aa)%3B Fasta score E(): 0%2C 99.2%25 identity in 130 aa overlap.;gbkey=CDS;gene=ML0291;product=hypothetical protein;protein_id=CAC29799.1;transl_table=11
AL450380.1	EMBL	gene	373605	373844	.	-	.	ID=gene-ML0292;Name=ML0292;gbkey=Gene;gene=ML0292;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	373605	373844	.	-	0	ID=cds-CAC29800.1;Parent=gene-ML0292;Dbxref=UniProtKB/TrEMBL:Q9CCX2,NCBI_GP:CAC29800.1;Name=CAC29800.1;Note=Unknown function. Possibly the remains of a disrupted gene.;gbkey=CDS;gene=ML0292;product=hypothetical protein;protein_id=CAC29800.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	373854	373857	.	-	.	ID=id-AL450380.1:373854..373857;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	375453	375662	.	-	.	ID=gene-ML0293;Name=ML0293;gbkey=Gene;gene=ML0293;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	375453	375662	.	-	0	ID=cds-CAC29801.1;Parent=gene-ML0293;Dbxref=UniProtKB/TrEMBL:Q9CCX1,NCBI_GP:CAC29801.1;Name=CAC29801.1;Note=Unknown function. Possibly the remains of a disrupted gene.;gbkey=CDS;gene=ML0293;product=hypothetical protein;protein_id=CAC29801.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	377474	377479	.	+	.	ID=id-AL450380.1:377474..377479;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	377487	379130	.	+	.	ID=gene-thiC;Name=thiC;gbkey=Gene;gene=thiC;gene_biotype=protein_coding;gene_synonym=ML0294
AL450380.1	EMBL	CDS	377487	379130	.	+	0	ID=cds-CAC29802.1;Parent=gene-thiC;Dbxref=GOA:Q9ZBL0,InterPro:IPR002817,InterPro:IPR025747,NCBI_GP:CAC29802.1;Name=CAC29802.1;Note=Similar to M. tuberculosis thiC%2C Rv0423c%2C thiamine biosynthesis protein%2C SW:THIC_MYCTU (P96269) (547 aa)%3B Fasta score E(): 0%2C 90.1%25 identity in 547 aa overlap. Similar to many e.g. Escherichia coli thiC%2C thiamine biosynthesis protein%2C SW:THIC_ECOLI (P30136) (631 aa)%3B Fasta score E(): 0%2C 59.2%25 identity in 593 aa overlap. Previously sequenced as SW:THIC_MYCLE (Q9ZBL0) (547 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 547 aa overlap. Contains Pfam match to entry PF01964 ThiC%2C ThiC family.;gbkey=CDS;gene=thiC;product=putative thiamine biosynthesis protein;protein_id=CAC29802.1;transl_table=11
AL450380.1	EMBL	sequence_feature	377742	379013	.	+	.	ID=id-thiC;Note=Pfam match to entry PF01964 ThiC%2C ThiC family%2C score 1105.40%2C E-value 0;gbkey=misc_feature;gene=thiC
AL450380.1	EMBL	gene	379127	379966	.	+	.	ID=gene-thiD;Name=thiD;gbkey=Gene;gene=thiD;gene_biotype=protein_coding;gene_synonym=ML0295
AL450380.1	EMBL	CDS	379127	379966	.	+	0	ID=cds-CAC29803.1;Parent=gene-thiD;Dbxref=GOA:Q9ZBL1,InterPro:IPR004399,InterPro:IPR013749,InterPro:IPR029056,NCBI_GP:CAC29803.1;Name=CAC29803.1;Note=Similar to M. tuberculosis thiD%2C Rv0422c%2C phosphomethylpyrimidine kinase%2C SW:THID_MYCTU (P96268) (265 aa)%3B Fasta score E(): 0%2C 77.8%25 identity in 266 aa overlap. Similar to many e.g. Escherichia coli thiD%2C phosphomethylpyrimidine kinase%2C SW:THID_ECOLI (P76422) (266 aa)%3B Fasta score E(): 3.2e-29%2C 38.4%25 identity in 263 aa overlap. Previously sequenced as SW:THID_MYCLE (Q9ZBL1) (279 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 279 aa overlap.;gbkey=CDS;gene=thiD;product=putative phosphomethylpyrimidine kinase;protein_id=CAC29803.1;transl_table=11
AL450380.1	EMBL	pseudogene	380011	380147	.	+	.	ID=gene-ML0296;Name=ML0296;gbkey=Gene;gene=ML0296;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	380011	380147	.	+	0	ID=cds-ML0296;Parent=gene-ML0296;Note=Possible pseudogene of M. tuberculosis orthologue Rv0421c (Best blastx score 85);gbkey=CDS;gene=ML0296;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	380645	381430	.	-	.	ID=gene-thiG;Name=thiG;gbkey=Gene;gene=thiG;gene_biotype=protein_coding;gene_synonym=ML0297
AL450380.1	EMBL	CDS	380645	381430	.	-	0	ID=cds-CAC29805.1;Parent=gene-thiG;Dbxref=GOA:Q9ZBL2,InterPro:IPR008867,InterPro:IPR013785,NCBI_GP:CAC29805.1;Name=CAC29805.1;Note=Similar to M. tuberculosis Rv0417%2C hypothetical protein%2C TR:P96263 (EMBL:AL123456) (252 aa)%3B Fasta score E(): 0%2C 86.8%25 identity in 250 aa overlap. Similar to many proteins involved in the biosynthesis of the thiazole moiety of thiamine e.g. Escherichia coli thiG%2C thiamine biosynthetic protein (thiazole moiety)%2C SW:THIG_ECOLI (P30139) (281 aa)%3B Fasta score E(): 0%2C 51.2%25 identity in 244 aa overlap. Previously sequenced as TR:Q9ZBL2 (EMBL:AL035159) (261 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 261 aa overlap.;gbkey=CDS;gene=thiG;product=putative thiamine biosynthesis protein;protein_id=CAC29805.1;transl_table=11
AL450380.1	EMBL	gene	381423	381647	.	-	.	ID=gene-ML0298;Name=ML0298;gbkey=Gene;gene=ML0298;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	381423	381647	.	-	0	ID=cds-CAC29806.1;Parent=gene-ML0298;Dbxref=InterPro:IPR003749,InterPro:IPR010035,InterPro:IPR012675,InterPro:IPR016155,UniProtKB/TrEMBL:Q7AQK0,NCBI_GP:CAC29806.1;Name=CAC29806.1;Note=Similar to M. tuberculosis Rv0416%2C conserved hypothetical protein%2C TR:P96262 (EMBL:AL123456) (68 aa)%3B Fasta score E(): 5.9e-17%2C 71.6%25 identity in 74 aa overlap. Similar to bacterial hypothetical protein e.g. Escherichia coli thiS%2C hypothetical protein%2C SW:THIS_ECOLI (O32583) (66 aa)%3B Fasta score E(): 0.41%2C 32.0%25 identity in 50 aa overlap. Previously sequenced as TR:Q9ZBL3 (EMBL:AL035159) (74 aa)%3B Fasta score E(): 1.2e-28%2C 100.0%25 identity in 74 aa overlap.;gbkey=CDS;gene=ML0298;product=conserved hypothetical protein;protein_id=CAC29806.1;transl_table=11
AL450380.1	EMBL	gene	381655	382677	.	-	.	ID=gene-ML0299;Name=ML0299;gbkey=Gene;gene=ML0299;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	381655	382677	.	-	0	ID=cds-CAC29807.1;Parent=gene-ML0299;Dbxref=GOA:Q7AQJ9,InterPro:IPR006076,InterPro:IPR012727,UniProtKB/TrEMBL:Q7AQJ9,NCBI_GP:CAC29807.1;Name=CAC29807.1;Note=Similar to M. tuberculosis Rv0415%2C conserved hypothetical protein%2C TR:P96261 (EMBL:AL123456) (340 aa)%3B Fasta score E(): 0%2C 82.0%25 identity in 338 aa overlap. Shows weak similarity to Bacillus subtilis goxB%2C glycine oxidase%2C SW:GLOX_BACSU (O31616) (369 aa)%3B Fasta score E(): 6.6e-10%2C 28.7%25 identity in 352 aa overlap. Previously sequenced as TR:Q9ZBL4 (EMBL:AL035159) (340 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 340 aa overlap. Contains Pfam match to entry PF01266 DAO%2C D-amino acid oxidase.%3B~Shows weak similarity to ML2011;gbkey=CDS;gene=ML0299;product=putative oxidoreductase;protein_id=CAC29807.1;transl_table=11
AL450380.1	EMBL	sequence_feature	381664	382656	.	-	.	ID=id-ML0299;Note=Pfam match to entry PF01266 DAO%2C D-amino acid oxidase%2C score 35.40%2C E-value 3.5e-09;gbkey=misc_feature;gene=ML0299
AL450380.1	EMBL	ribosome_entry_site	382683	382688	.	-	.	ID=id-AL450380.1:382683..382688;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	382835	383542	.	+	.	ID=gene-thiE;Name=thiE;gbkey=Gene;gene=thiE;gene_biotype=protein_coding;gene_synonym=ML0300
AL450380.1	EMBL	CDS	382835	383542	.	+	0	ID=cds-CAC29808.1;Parent=gene-thiE;Dbxref=GOA:Q9ZBL5,InterPro:IPR003733,InterPro:IPR013785,InterPro:IPR022998,NCBI_GP:CAC29808.1;Name=CAC29808.1;Note=Similar to M. tuberculosis thiE%2C Rv0414c%2C putative thiamine-phosphate pyrophosphorylase%2C SW:THIE_MYCTU (P96260) (222 aa)%3B Fasta score E(): 0%2C 78.9%25 identity in 223 aa overlap. Similar to many e.g. Escherichia coli thiE%2C thiamine-phosphate pyrophosphorylase%2C SW:THIE_ECOLI (P30137) (211 aa)%3B Fasta score E(): 5e-10%2C 38.7%25 identity in 199 aa overlap. Previously sequenced as SW:THIE_MYCLE (Q9ZBL5) (235 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 235 aa overlap.;gbkey=CDS;gene=thiE;product=putative thiamine-phosphate pyrophosphorylase;protein_id=CAC29808.1;transl_table=11
AL450380.1	EMBL	pseudogene	383529	384154	.	-	.	ID=gene-mutT3;Name=mutT3;gbkey=Gene;gene=mutT3;gene_biotype=pseudogene;gene_synonym=ML0301;pseudo=true
AL450380.1	EMBL	CDS	383529	384154	.	-	0	ID=cds-mutT3;Parent=gene-mutT3;Note=Possible pseudogene of M. tuberculosis orthologue mutT3 (Best blastx score 180);gbkey=CDS;gene=mutT3;product=MutT homologue (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	384334	385649	.	+	.	ID=gene-ML0302;Name=ML0302;gbkey=Gene;gene=ML0302;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	384334	385649	.	+	0	ID=cds-ML0302;Parent=gene-ML0302;Note=Possible pseudogene of M. tuberculosis orthologue Rv0412c (Best blastx score 1672);gbkey=CDS;gene=ML0302;product=putative membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	385638	385642	.	+	.	ID=id-ML0302;Parent=gene-ML0302;Note=possible RBS;gbkey=regulatory;gene=ML0302;pseudo=true;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	385649	386629	.	+	.	ID=gene-glnH;Name=glnH;gbkey=Gene;gene=glnH;gene_biotype=protein_coding;gene_synonym=ML0303
AL450380.1	EMBL	CDS	385649	386629	.	+	0	ID=cds-CAC29811.1;Parent=gene-glnH;Dbxref=GOA:Q9CCX0,InterPro:IPR001638,UniProtKB/TrEMBL:Q9CCX0,NCBI_GP:CAC29811.1;Name=CAC29811.1;Note=Similar to M. tuberculosis glnH%2C Rv0411c%2C putative glutamine-binding protein%2C TR:P96257 (EMBL:AL123456) (328 aa)%3B Fasta score E(): 0%2C 79.3%25 identity in 328 aa overlap. Similar to many bacterial solute-binding proteins e.g. Bacillus stearothermophilus glnH%2C glutamine-binding protein%2C SW:GLNH_BACST (P27676) (262 aa)%3B Fasta score E(): 3.7e-23%2C 38.1%25 identity in 194 aa overlap. Previously sequenced as TR:Q9ZBL7 (EMBL:AL035159) (325 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 325 aa overlap. Contains a probable N-terminal signal sequence. Contains Pfam match to entry PF00497 SBP_bac_3%2C Bacterial extracellular solute-binding proteins%2C family 3. Contains PS01039 Bacterial extracellular solute-binding proteins%2C family 3 signature. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=glnH;product=putative glutamine-binding protein;protein_id=CAC29811.1;transl_table=11
AL450380.1	EMBL	sequence_feature	385670	386578	.	+	.	ID=id-glnH;Note=Pfam match to entry PF00497 SBP_bac_3%2C Bacterial extracellular solute-binding proteins%2C family 3%2C score 98.70%2C E-value 1.2e-25;gbkey=misc_feature;gene=glnH
AL450380.1	EMBL	sequence_feature	385688	385720	.	+	.	ID=id-glnH-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=glnH
AL450380.1	EMBL	sequence_feature	385991	386032	.	+	.	ID=id-glnH-3;Note=PS01039 Bacterial extracellular solute-binding proteins%2C family 3 signature;gbkey=misc_feature;gene=glnH
AL450380.1	EMBL	gene	386629	388932	.	+	.	ID=gene-pknG;Name=pknG;gbkey=Gene;gene=pknG;gene_biotype=protein_coding;gene_synonym=ML0304
AL450380.1	EMBL	CDS	386629	388932	.	+	0	ID=cds-CAC29812.1;Parent=gene-pknG;Dbxref=GOA:P57993,InterPro:IPR000719,InterPro:IPR008271,InterPro:IPR011009,NCBI_GP:CAC29812.1;Name=CAC29812.1;Note=Similar to M. tuberculosis pknG%2C Rv0410c%2C putative serine/threonine protein kinase%2C TR:P96256 (EMBL:AL123456) (750 aa)%3B Fasta score E(): 0%2C 83.1%25 identity in 756 aa overlap. Similar to many bacterial putative serine/threonine protein kinases e.g. Streptomyces coelicolor SC6D10.09%2C possible protein kinase%2C TR:CAB71204 (EMBL:AL138538) (903 aa)%3B Fasta score E(): 0%2C 42.0%25 identity in 793 aa overlap. Similar in part%2C to protein kinases from Myxococcus xanthus e.g. pkn12%2C serine/threonine protein kinase%2C TR:Q9XBP5 (EMBL:AF159692) (465 aa)%3B Fasta score E(): 2.9e-10%2C 28.4%25 identity in 292 aa overlap. Previously sequenced as TR:Q9ZBL8 (EMBL:AL035159) (763 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 763 aa overlap. Contains Pfam match to entry PF00069 pkinase%2C Eukaryotic protein kinase domain. Contains PS00108 Serine/Threonine protein kinases active-site signature.%3B~Similar to regions of ML0016 and ML0017;gbkey=CDS;gene=pknG;product=putative serine-threonine protein kinase;protein_id=CAC29812.1;transl_table=11
AL450380.1	EMBL	sequence_feature	387118	387693	.	+	.	ID=id-pknG;Note=Pfam match to entry PF00069 pkinase%2C Eukaryotic protein kinase domain%2C score 91.00%2C E-value 3.9e-24;gbkey=misc_feature;gene=pknG
AL450380.1	EMBL	sequence_feature	387493	387531	.	+	.	ID=id-pknG-2;Note=PS00108 Serine/Threonine protein kinases active-site signature;gbkey=misc_feature;gene=pknG
AL450380.1	EMBL	repeat_region	389364	390409	.	+	.	ID=id-AL450380.1:389364..390409;Note=REPLEP region 3%2C 5'-end most similar to REPLEP 15%3B 3'-end most similar to REPLEP 14;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	389417	390296	.	+	.	ID=id-AL450380.1:389417..390296;Note=Dispersed repeat%2C REPLEP%2C copy 3;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	390297	390324	.	+	.	ID=id-AL450380.1:390297..390324;Note=28 bp subsequence of 45 bp REPLEP-associated sequence;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	390457	391901	.	-	.	ID=gene-ML0305;Name=ML0305;gbkey=Gene;gene=ML0305;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	390457	391901	.	-	0	ID=cds-ML0305;Parent=gene-ML0305;Note=Possible pseudogene of M. tuberculosis orthologue Rv0537c (Best blastx score 503);gbkey=CDS;gene=ML0305;product=unknown%2C possible membrane protein%2C (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	392396	393159	.	+	.	ID=gene-ML0306;Name=ML0306;gbkey=Gene;gene=ML0306;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	392396	393159	.	+	0	ID=cds-ML0306;Parent=gene-ML0306;Note=Possible pseudogene of M. tuberculosis orthologue Rv0538 (Best blastx score 184);gbkey=CDS;gene=ML0306;product=possible transmembrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	393500	393920	.	+	.	ID=gene-ML0307;Name=ML0307;gbkey=Gene;gene=ML0307;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	393500	393920	.	+	0	ID=cds-ML0307;Parent=gene-ML0307;Note=Possible pseudogene of M. tuberculosis orthologue Rv0434 (Best blastx score 130);gbkey=CDS;gene=ML0307;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	394457	395161	.	+	.	ID=gene-ML0308;Name=ML0308;gbkey=Gene;gene=ML0308;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	394457	395161	.	+	0	ID=cds-CAC29816.1;Parent=gene-ML0308;Dbxref=InterPro:IPR029063,UniProtKB/TrEMBL:Q7AQJ8,NCBI_GP:CAC29816.1;Name=CAC29816.1;Note=Similar to hypothetical proteins from methanobacteria e.g. Methanobacterium thermoautotrophicum MTH1801%2C hypothetical protein%2C TR:O27829 (EMBL:AE000934) (224 aa)%3B Fasta score E(): 3.6e-24%2C 39.3%25 identity in 219 aa overlap and Methanococcus jannaschii MJ0045%2C hypothetical protein%2C SW:Y045_METJA (Q60353) (221 aa)%3B Fasta score E(): 4e-17%2C 30.5%25 identity in 220 aa overlap. Previously sequenced as TR:Q9ZBM1 (EMBL:AL035159) (234 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 234 aa overlap.;gbkey=CDS;gene=ML0308;product=conserved hypothetical protein;protein_id=CAC29816.1;transl_table=11
AL450380.1	EMBL	pseudogene	395181	397022	.	-	.	ID=gene-ML0309;Name=ML0309;gbkey=Gene;gene=ML0309;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	395181	397022	.	-	0	ID=cds-ML0309;Parent=gene-ML0309;Note=Possible pseudogene of M. tuberculosis orthologue Rv0435c (Best blastx score 329);gbkey=CDS;gene=ML0309;product=ATPase of AAA-family (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	397046	397948	.	-	.	ID=gene-pssA;Name=pssA;gbkey=Gene;gene=pssA;gene_biotype=protein_coding;gene_synonym=ML0310
AL450380.1	EMBL	CDS	397046	397948	.	-	0	ID=cds-CAC29818.1;Parent=gene-pssA;Dbxref=GOA:Q9ZBM2,InterPro:IPR000462,InterPro:IPR004533,NCBI_GP:CAC29818.1;Name=CAC29818.1;Note=Similar to M. tuberculosis pssA%2C Rv0436c%2C CDP-diacylglycerol-serine o-phosphatidyltransferase%2C SW:PSS_MYCTU (P96282) (286 aa)%3B Fasta score E(): 0%2C 77.9%25 identity in 285 aa overlap. Similar to many e.g. Helicobacter pylori pssA%2C CDP-diacylglycerol-serine o-phosphatidyltransferase%2C SW:PSS_HELPY (Q48269) (237 aa)%3B Fasta score E(): 2.3e-14%2C 34.6%25 identity in 234 aa overlap. Previously sequenced as TR:Q9ZBM2 (EMBL:AL035159) (300 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 300 aa overlap. Contains Pfam match to entry PF01066 CDP-OH_P_transf%2C CDP-alcohol phosphatidyltransferase. Contains PS00379 CDP-alcohol phosphatidyltransferases signature.;gbkey=CDS;gene=pssA;product=putative CDP-diacylglycerol-serine o-phosphatidyltransferase;protein_id=CAC29818.1;transl_table=11
AL450380.1	EMBL	sequence_feature	397271	397819	.	-	.	ID=id-pssA;Note=Pfam match to entry PF01066 CDP-OH_P_transf%2C CDP-alcohol phosphatidyltransferase%2C score -1.50%2C E-value 0.0012;gbkey=misc_feature;gene=pssA
AL450380.1	EMBL	sequence_feature	397712	397780	.	-	.	ID=id-pssA-2;Note=PS00379 CDP-alcohol phosphatidyltransferases signature;gbkey=misc_feature;gene=pssA
AL450380.1	EMBL	gene	397945	398676	.	-	.	ID=gene-ML0311;Name=ML0311;gbkey=Gene;gene=ML0311;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	397945	398676	.	-	0	ID=cds-CAC29819.1;Parent=gene-ML0311;Dbxref=GOA:Q9CCW9,InterPro:IPR003817,NCBI_GP:CAC29819.1;Name=CAC29819.1;Note=Similar to M. tuberculosis psd%2C Rv0437c%2C putative phosphatidylserine decarboxylase%2C TR:O86324 (EMBL:AL123456) (231 aa)%3B Fasta score E(): 0%2C 72.6%25 identity in 241 aa overlap. Similar to many bacterial hypothetical proteins e.g. Rickettsia prowazekii RP241%2C hypothetical protein%2C TR:Q9ZDT4 (EMBL:AJ235271) (231 aa)%3B Fasta score E(): 5.2e-31%2C 43.3%25 identity in 215 aa overlap and Neisseria meningitidis MC58 NMB0963%2C phosphatidylserine decarboxylase precursor-related protein%2C TR:AAF41369 (EMBL:AE002447) (265 aa)%3B Fasta score E(): 2.5e-23%2C 39.2%25 identity in 217 aa overlap. Previously sequenced as TR:Q9ZBM3 (EMBL:AL035159) (202 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 202 aa overlap. The start codon is uncertain. Codon usage suggests an alternative start at codon 63 (approx).;gbkey=CDS;gene=ML0311;product=conserved hypothetical protein;protein_id=CAC29819.1;transl_table=11
AL450380.1	EMBL	pseudogene	398720	399953	.	-	.	ID=gene-moaA3;Name=moaA3;gbkey=Gene;gene=moaA3;gene_biotype=pseudogene;gene_synonym=ML0312;pseudo=true
AL450380.1	EMBL	CDS	398720	399953	.	-	0	ID=cds-moaA3;Parent=gene-moaA3;Note=Possible pseudogene of M. tuberculosis orthologue moaA3 (Best blastx score 245);gbkey=CDS;gene=moaA3;product=molybdenum cofactor biosynthesis%2C protein A (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	400042	400675	.	-	.	ID=gene-ML0313;Name=ML0313;gbkey=Gene;gene=ML0313;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	400042	400675	.	-	0	ID=cds-ML0313;Parent=gene-ML0313;Note=Possible pseudogene of M. tuberculosis orthologue Rv0439c (Best blastx score 248);gbkey=CDS;gene=ML0313;product=probable oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	400771	401778	.	-	.	ID=gene-ML0314;Name=ML0314;gbkey=Gene;gene=ML0314;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	400771	401778	.	-	0	ID=cds-CAC29822.1;Parent=gene-ML0314;Dbxref=GOA:Q7AQJ7,InterPro:IPR002168,InterPro:IPR013094,InterPro:IPR029058,UniProtKB/TrEMBL:Q7AQJ7,NCBI_GP:CAC29822.1;Name=CAC29822.1;Note=Similar to M. tuberculosis lipU%2C Rv1076%2C probable esterase%2C TR:O53424 (EMBL:AL123456) (297 aa)%3B Fasta score E(): 0%2C 79.7%25 identity in 296 aa overlap. Also similar to other putative esterases from M. tuberculosis. Similar to esterases e.g. Streptomyces hygroscopicus bah%2C acetyl-hydrolase%2C SW:BAH_STRHY (Q01109) (299 aa)%3B Fasta score E(): 6.6e-19%2C 36.2%25 identity in 246 aa overlap. Previuosly sequenced as TR:Q9ZBM4 (EMBL:AL035159) (335 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 335 aa overlap. Contains PS01174 Lipolytic enzymes 'G-D-X-G' family%2C putative serine active site.;gbkey=CDS;gene=ML0314;product=putative esterase;protein_id=CAC29822.1;transl_table=11
AL450380.1	EMBL	sequence_feature	401257	401295	.	-	.	ID=id-ML0314;Note=PS01174 Lipolytic enzymes 'G-D-X-G' family%2C putative serine active site;gbkey=misc_feature;gene=ML0314
AL450380.1	EMBL	gene	403698	404612	.	-	.	ID=gene-ML0315;Name=ML0315;gbkey=Gene;gene=ML0315;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	403698	404612	.	-	0	ID=cds-CAC29823.1;Parent=gene-ML0315;Dbxref=GOA:Q7AQJ6,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,UniProtKB/TrEMBL:Q7AQJ6,NCBI_GP:CAC29823.1;Name=CAC29823.1;Note=Similar to M. tuberculosis Rv0068%2C putative oxidoreductase%2C TR:O53613 (EMBL:AL123456) (303 aa)%3B Fasta score E(): 0%2C 73.9%25 identity in 306 aa overlap and to other M. tuberculosis putative oxidoreductases (e.g. Rv0439c). Similar to many bacterial putative oxidoreductases e.g. Streptomyces coelicolor SC7A8.30C%2C putative oxidoreductase%2C TR:CAB69779 (EMBL:AL137187) (310 aa)%3B Fasta score E(): 0%2C 47.9%25 identity in 311 aa overlap. Previously sequenced as TR:Q9ZBM5 (EMBL:AL035159) (304 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 304 aa overlap. Contains Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase.;gbkey=CDS;gene=ML0315;product=putative oxidoreductase;protein_id=CAC29823.1;transl_table=11
AL450380.1	EMBL	sequence_feature	403974	404570	.	-	.	ID=id-ML0315;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 95.90%2C E-value 7.9e-25;gbkey=misc_feature;gene=ML0315
AL450380.1	EMBL	ribosome_entry_site	404619	404623	.	-	.	ID=id-AL450380.1:404619..404623;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	404707	405309	.	+	.	ID=gene-ML0316;Name=ML0316;gbkey=Gene;gene=ML0316;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	404707	405309	.	+	0	ID=cds-CAC29824.1;Parent=gene-ML0316;Dbxref=GOA:Q9CCW8,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR015893,UniProtKB/TrEMBL:Q9CCW8,NCBI_GP:CAC29824.1;Name=CAC29824.1;Note=Similar to M. tuberculosis Rv0067c%2C putative transcriptional regulator%2C TR:O53612 (EMBL:AL123456) (189 aa)%3B Fasta score E(): 0%2C 68.8%25 identity in 189 aa overlap. Similar to many putative transcriptional regulators e.g. Streptomyces coelicolor SCF6.16%2C putative tetR family transcriptional regulator%2C TR:Q9RJL5 (EMBL:AL121849) (194 aa)%3B Fasta score E(): 2.5e-18%2C 39.5%25 identity in 185 aa overlap. Previously sequenced as TR:Q9ZBM6 (EMBL:AL035159) (189 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 189 aa overlap. Contains a probable helix-turn-helix motif at aa 45-66 (Score 1800%2C SD +5.32) Contains Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family.;gbkey=CDS;gene=ML0316;product=putative TetR/AcrR-family transcriptional regulator;protein_id=CAC29824.1;transl_table=11
AL450380.1	EMBL	sequence_feature	404794	404931	.	+	.	ID=id-ML0316;Note=Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family%2C score 62.00%2C E-value 1.3e-14;gbkey=misc_feature;gene=ML0316
AL450380.1	EMBL	ribosome_entry_site	405501	405505	.	+	.	ID=id-AL450380.1:405501..405505;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	405518	407143	.	+	.	ID=gene-groEL2;Name=groEL2;gbkey=Gene;gene=groEL2;gene_biotype=protein_coding;gene_synonym=ML0317
AL450380.1	EMBL	CDS	405518	407143	.	+	0	ID=cds-CAC29825.1;Parent=gene-groEL2;Dbxref=GOA:P09239,InterPro:IPR001844,InterPro:IPR002423,InterPro:IPR018370,InterPro:IPR027409,InterPro:IPR027413,NCBI_GP:CAC29825.1;Name=CAC29825.1;Note=Similar to M. tuberculosis groEL2%2C Rv0440%2C 60 kDa chaperonin 2%2C SW:CH62_MYCTU (P06806) (539 aa)%3B Fasta score E(): 0%2C 94.8%25 identity in 541 aa overlap. A major immunoreactive protein (65 kDa antigen). Previously sequenced as SW:CH62_MYCLE (P09239) (540 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 540 aa overlap. Contains Pfam match to entry PF00118 cpn60_TCP1%2C TCP-1/cpn60 chaperonin family. Contains PS00296 Chaperonins cpn60 signature.%3B~Similar to ML0381;gbkey=CDS;gene=groEL2;product=60 kDa chaperonin 2;protein_id=CAC29825.1;transl_table=11
AL450380.1	EMBL	sequence_feature	405581	407083	.	+	.	ID=id-groEL2;Note=Pfam match to entry PF00118 cpn60_TCP1%2C TCP-1/cpn60 chaperonin family%2C score 777.80%2C E-value 4.3e-230;gbkey=misc_feature;gene=groEL2
AL450380.1	EMBL	sequence_feature	406724	406759	.	+	.	ID=id-groEL2-2;Note=PS00296 Chaperonins cpn60 signature;gbkey=misc_feature;gene=groEL2
AL450380.1	EMBL	repeat_region	407378	408126	.	+	.	ID=id-AL450380.1:407378..408126;Note=Dispersed repeat%2C RLEP%2C copy 6;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	408187	409345	.	-	.	ID=gene-radA;Name=radA;gbkey=Gene;gene=radA;gene_biotype=pseudogene;gene_synonym=ML0318;pseudo=true
AL450380.1	EMBL	CDS	408187	409345	.	-	0	ID=cds-radA;Parent=gene-radA;Note=Possible pseudogene of M. tuberculosis orthologue radA (Best blastx score 221);gbkey=CDS;gene=radA;product=probable DNA repair RadA homologue (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	409442	409993	.	-	.	ID=gene-lpqE;Name=lpqE;gbkey=Gene;gene=lpqE;gene_biotype=protein_coding;gene_synonym=ML0319
AL450380.1	EMBL	CDS	409442	409993	.	-	0	ID=cds-CAC29827.1;Parent=gene-lpqE;Dbxref=GOA:Q9ZBM7,NCBI_GP:CAC29827.1;Name=CAC29827.1;Note=Similar to M. tuberculosis lpqE%2C Rv3584%2C putative lipoprotein%2C TR:O53569 (EMBL:AL123456) (182 aa)%3B Fasta score E(): 0%2C 63.4%25 identity in 175 aa overlap. Previously sequenced as TR:Q9ZBM7 (EMBL:AL035159) (183 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 183 aa overlap. Contains a probable N-terminal signal sequnce. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=lpqE;product=putative lipoprotein;protein_id=CAC29827.1;transl_table=11
AL450380.1	EMBL	sequence_feature	409901	409933	.	-	.	ID=id-lpqE;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=lpqE
AL450380.1	EMBL	ribosome_entry_site	410000	410005	.	-	.	ID=id-AL450380.1:410000..410005;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	410354	410851	.	+	.	ID=gene-ML0320;Name=ML0320;gbkey=Gene;gene=ML0320;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	410354	410851	.	+	0	ID=cds-CAC29828.1;Parent=gene-ML0320;Dbxref=InterPro:IPR003711,UniProtKB/TrEMBL:Q9CCW7,NCBI_GP:CAC29828.1;Name=CAC29828.1;Note=Similar to M. tuberculosis Rv3583c%2C putative transcription factor%2C TR:O53568 (EMBL:AL123456) (162 aa)%3B Fasta score E(): 0%2C 97.5%25 identity in 162 aa overlap. Shows weak similarity to Myxococcus xanthus carD%2C transcription factor%2C TR:Q50887 (EMBL:Z56280) (316 aa)%3B Fasta score E(): 9.1e-13%2C 31.2%25 identity in 154 aa overlap and to many hypothetical transcription factors.;gbkey=CDS;gene=ML0320;product=putative transcription factor;protein_id=CAC29828.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	410859	410862	.	+	.	ID=id-AL450380.1:410859..410862;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	410870	411595	.	+	.	ID=gene-ML0321;Name=ML0321;gbkey=Gene;gene=ML0321;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	410870	411595	.	+	0	ID=cds-CAC29829.1;Parent=gene-ML0321;Dbxref=GOA:Q9CCW6,InterPro:IPR001228,InterPro:IPR018294,InterPro:IPR029044,NCBI_GP:CAC29829.1;Name=CAC29829.1;Note=Similar to M. tuberculosis Rv3582c%2C conserved hypothetical protein%2C SW:YZ82_MYCTU (P96864) (231 aa)%3B Fasta score E(): 0%2C 66.0%25 identity in 241 aa overlap. Similar to many bacterial hypothetical proteins e.g. Streptomyces coelicolor SCD8A.06%2C hypothetical protein%2C TR:CAB77327 (EMBL:AL160331) (270 aa)%3B Fasta score E(): 4.3e-25%2C 45.0%25 identity in 240 aa overlap. Shows weak similarity to non-mevalonate pathway enzyme 4-diphosphocytidyl-2C-methyl-D-erythritol synthases e.g. Escherichia coli ispD%2C 4-diphosphocytidyl-2C-methyl-D-erythritol synthase%2C TR:AAF43207 (EMBL:AF230736) (236 aa)%3B Fasta score E(): 0.0016%2C 36.1%25 identity in 244 aa overlap. Contains Pfam match to entry PF01128 UPF0007%2C Uncharacterized protein family UPF0007.;gbkey=CDS;gene=ML0321;product=putative 4-diphosphocytidyl-2C-methyl-D-erythritol synthase;protein_id=CAC29829.1;transl_table=11
AL450380.1	EMBL	sequence_feature	410891	411592	.	+	.	ID=id-ML0321;Note=Pfam match to entry PF01128 UPF0007%2C Uncharacterized protein family UPF0007%2C score 293.70%2C E-value 2.3e-84;gbkey=misc_feature;gene=ML0321
AL450380.1	EMBL	gene	411592	412068	.	+	.	ID=gene-ML0322;Name=ML0322;gbkey=Gene;gene=ML0322;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	411592	412068	.	+	0	ID=cds-CAC29830.1;Parent=gene-ML0322;Dbxref=GOA:Q9CCW5,InterPro:IPR003526,InterPro:IPR020555,NCBI_GP:CAC29830.1;Name=CAC29830.1;Note=Similar to M. tuberculosis Rv3581c%2C hypothetical protein%2C SW:YZ81_MYCTU (P96863) (159 aa)%3B Fasta score E(): 0%2C 79.1%25 identity in 158 aa overlap. Similar to 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthases%2C e.g. Escherichia coli 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase%2C TR:BAA95145 (EMBL:AB038256) (159 aa)%3B Fasta score E(): 1e-17%2C 41.3%25 identity in 155 aa overlap. Contains Pfam match to entry PF01128 UPF0007%2C Uncharacterized protein family UPF0007.;gbkey=CDS;gene=ML0322;product=putative 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase;protein_id=CAC29830.1;transl_table=11
AL450380.1	EMBL	gene	412123	413544	.	+	.	ID=gene-cysS;Name=cysS;gbkey=Gene;gene=cysS;gene_biotype=protein_coding;gene_synonym=ML0323
AL450380.1	EMBL	CDS	412123	413544	.	+	0	ID=cds-CAC29831.1;Parent=gene-cysS;Dbxref=GOA:P57990,InterPro:IPR009080,InterPro:IPR014729,InterPro:IPR015273,InterPro:IPR015803,InterPro:IPR024909,NCBI_GP:CAC29831.1;Name=CAC29831.1;Note=Similar to M. tuberculosis cysS%2C Rv3580c%2C cysteinyl-tRNA synthetase%2C SW:SYC1_MYCTU (P96862) (469 aa)%3B Fasta score E(): 0%2C 86.5%25 identity in 467 aa overlap. Similar to many e.g. Escherichia coli cysS%2C cysteinyl-tRNA synthetase%2C SW:SYC_ECOLI (P21888) (461 aa)%3B Fasta score E(): 0%2C 42.0%25 identity in 460 aa overlap. Contains Pfam match to entry PF01406 tRNA-synt_1e%2C tRNA synthetases class I (C).%3B~Similar to ML1302;gbkey=CDS;gene=cysS;product=putative cysteinyl-tRNA synthase;protein_id=CAC29831.1;transl_table=11
AL450380.1	EMBL	sequence_feature	412177	413472	.	+	.	ID=id-cysS;Note=Pfam match to entry PF01406 tRNA-synt_1e%2C tRNA synthetases class I (C)%2C score 815.60%2C E-value 1.8e-241;gbkey=misc_feature;gene=cysS
AL450380.1	EMBL	gene	413627	414463	.	+	.	ID=gene-ML0324;Name=ML0324;gbkey=Gene;gene=ML0324;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	413627	414463	.	+	0	ID=cds-CAC29832.1;Parent=gene-ML0324;Dbxref=GOA:Q9CCW4,InterPro:IPR001537,InterPro:IPR004441,InterPro:IPR013123,InterPro:IPR029026,InterPro:IPR029028,InterPro:IPR029064,NCBI_GP:CAC29832.1;Name=CAC29832.1;Note=Similar to M. tuberculosis Rv3579c%2C putative methyltransferase%2C TR:P96861 (EMBL:AL123456) (322 aa)%3B Fasta score E(): 0%2C 84.1%25 identity in 277 aa overlap. Similar Streptomyces actuosus nhs%2C 23S rRNA methyltransferase and to many hypothetical rRNA methyltransferases. Contains Pfam match to entry PF00588 SpoU_methylase%2C SpoU rRNA Methylase family.;gbkey=CDS;gene=ML0324;product=putative methyltransferase;protein_id=CAC29832.1;transl_table=11
AL450380.1	EMBL	sequence_feature	414011	414436	.	+	.	ID=id-ML0324;Note=Pfam match to entry PF00588 SpoU_methylase%2C SpoU rRNA Methylase family%2C score 159.60%2C E-value 5.2e-44;gbkey=misc_feature;gene=ML0324
AL450380.1	EMBL	ribosome_entry_site	414843	414848	.	+	.	ID=id-AL450380.1:414843..414848;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	414865	415128	.	+	.	ID=gene-ML0325;Name=ML0325;gbkey=Gene;gene=ML0325;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	414865	415128	.	+	0	ID=cds-CAC29833.1;Parent=gene-ML0325;Dbxref=GOA:Q9CCW3,InterPro:IPR017946,UniProtKB/TrEMBL:Q9CCW3,NCBI_GP:CAC29833.1;Name=CAC29833.1;Note=Unknown function. Possibly the remains of a disrupted gene.;gbkey=CDS;gene=ML0325;product=hypothetical protein;protein_id=CAC29833.1;transl_table=11
AL450380.1	EMBL	stem_loop	415215	415269	.	-	.	ID=id-AL450380.1:415215..415269;Note=55 bp palindrome;gbkey=stem_loop
AL450380.1	EMBL	pseudogene	416569	416845	.	-	.	ID=gene-ML0326;Name=ML0326;gbkey=Gene;gene=ML0326;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	416569	416845	.	-	0	ID=cds-ML0326;Parent=gene-ML0326;Note=Possible pseudogene of M. tuberculosis orthologue Rv0288 (Best blastx score 118);gbkey=CDS;gene=ML0326;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	416866	417152	.	-	.	ID=gene-ML0327;Name=ML0327;gbkey=Gene;gene=ML0327;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	416866	417152	.	-	0	ID=cds-ML0327;Parent=gene-ML0327;Note=Possible pseudogene of M. tuberculosis orthologue Rv0287 (Best blastx score 124);gbkey=CDS;gene=ML0327;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	417242	418418	.	-	.	ID=gene-PPE-2;Name=PPE;gbkey=Gene;gene=PPE;gene_biotype=pseudogene;gene_synonym=ML0328;pseudo=true
AL450380.1	EMBL	CDS	417242	418418	.	-	0	ID=cds-PPE-2;Parent=gene-PPE-2;Note=Possible pseudogene of M. tuberculosis orthologue Rv0286%2C PPE (Best blastx score 169);gbkey=CDS;gene=PPE;product=PPE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	420549	420876	.	-	.	ID=gene-ML0329;Name=ML0329;gbkey=Gene;gene=ML0329;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	420549	420876	.	-	0	ID=cds-ML0329;Parent=gene-ML0329;Note=Possible pseudogene of M. tuberculosis orthologue Rv1942c (Best blastx score 168);gbkey=CDS;gene=ML0329;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	420876	420989	.	-	.	ID=gene-ML0330;Name=ML0330;gbkey=Gene;gene=ML0330;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	420876	420989	.	-	0	ID=cds-ML0330;Parent=gene-ML0330;Note=Possible pseudogene of M. tuberculosis orthologue Rv1943c (Best blastx score 154);gbkey=CDS;gene=ML0330;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	421105	422310	.	-	.	ID=gene-arsB2;Name=arsB2;gbkey=Gene;gene=arsB2;gene_biotype=pseudogene;gene_synonym=ML0331;pseudo=true
AL450380.1	EMBL	CDS	421105	422310	.	-	0	ID=cds-arsB2;Parent=gene-arsB2;Note=Possible pseudogene of M. tuberculosis orthologue arsB2 (Best blastx score 423);gbkey=CDS;gene=arsB2;product=probable arsenical pump (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	421979	422252	.	-	.	ID=id-arsB2;Note=274 bp repeat%2C 99%25 identity to 2828540..2828813;gbkey=repeat_region;gene=arsB2;pseudo=true
AL450380.1	EMBL	pseudogene	422317	423055	.	-	.	ID=gene-ML0332;Name=ML0332;gbkey=Gene;gene=ML0332;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	422317	423055	.	-	0	ID=cds-ML0332;Parent=gene-ML0332;Note=Possible pseudogene of M. tuberculosis orthologue Rv3577 (Best blastx score 257);gbkey=CDS;gene=ML0332;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	423178	423936	.	-	.	ID=gene-ML0333;Name=ML0333;gbkey=Gene;gene=ML0333;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	423178	423936	.	-	0	ID=cds-CAC29841.1;Parent=gene-ML0333;Dbxref=GOA:Q9CCW2,InterPro:IPR005501,InterPro:IPR011330,NCBI_GP:CAC29841.1;Name=CAC29841.1;Note=N-terminal half is similar to that of Emericella nidulans lamB%2C lactam utilization protein%2C SW:LAMB_EMENI (P38096) (262 aa)%3B Fasta score E(): 2.6e-15%2C 38.3%25 identity in 128 aa overlap. Similar to many bacterial hypothetical proteins e.g. TR:Q9RL45 (EMBL:AL121596) (250 aa)%3B Fasta score E(): 0%2C 58.1%25 identity in 248 aa overlap.;gbkey=CDS;gene=ML0333;product=conserved hypothetical protein;protein_id=CAC29841.1;transl_table=11
AL450380.1	EMBL	pseudogene	424106	424678	.	-	.	ID=gene-pknM;Name=pknM;gbkey=Gene;gene=pknM;gene_biotype=pseudogene;gene_synonym=ML0334;pseudo=true
AL450380.1	EMBL	CDS	424106	424678	.	-	0	ID=cds-pknM;Parent=gene-pknM;Note=Possible pseudogene of M. tuberculosis orthologue pknM (Best blastx score 208);gbkey=CDS;gene=pknM;product=similar to ser-thr-protein kinases (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	424867	425727	.	-	.	ID=gene-ML0335;Name=ML0335;gbkey=Gene;gene=ML0335;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	424867	425727	.	-	0	ID=cds-CAC29843.1;Parent=gene-ML0335;Dbxref=GOA:Q9CCW1,InterPro:IPR001626,InterPro:IPR029022,UniProtKB/TrEMBL:Q9CCW1,NCBI_GP:CAC29843.1;Name=CAC29843.1;Note=Similar in part to M. tuberculosis Rv2060%2C conserved hypothetical protein%2C TR:O86339 (EMBL:AL123456) (133 aa)%3B Fasta score E(): 0%2C 80.3%25 identity in 132 aa overlap. Similar%2C except N-terminal approx. 100 aa to many bacterial ABC transporters e.g. Streptococcus pneumoniae adcB%2C putative ABC metal permease%2C TR:O33704 (EMBL:Z71552) (268 aa)%3B Fasta score E(): 2.5e-15%2C 26.6%25 identity in 263 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions. Contains Pfam match to entry PF00950 ABC-3%2C ABC 3 transport family.;gbkey=CDS;gene=ML0335;product=putative ABC-transporter transmembrane protein;protein_id=CAC29843.1;transl_table=11
AL450380.1	EMBL	sequence_feature	424891	425661	.	-	.	ID=id-ML0335;Note=Pfam match to entry PF00950 ABC-3%2C ABC 3 transport family%2C score 95.40%2C E-value 1.1e-24;gbkey=misc_feature;gene=ML0335
AL450380.1	EMBL	gene	425727	426554	.	-	.	ID=gene-ML0336;Name=ML0336;gbkey=Gene;gene=ML0336;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	425727	426554	.	-	0	ID=cds-CAC29844.1;Parent=gene-ML0336;Dbxref=GOA:Q9CCW0,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CCW0,NCBI_GP:CAC29844.1;Name=CAC29844.1;Note=Similar to many putative ABC-tranporter ATP-binding proteins e.g. Chlamydia trachomatis troB%2C ABC transporter ATPase%2C TR:O87477 (EMBL:AF077010) (286 aa)%3B Fasta score E(): 4.7e-16%2C 31.4%25 identity in 223 aa overlap. Contains Pfam match to entry PF00005 ABC_tran%2C ABC transporter. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00211 ABC transporters family signature.;gbkey=CDS;gene=ML0336;product=putative ABC-tranporter ATP-binding protein;protein_id=CAC29844.1;transl_table=11
AL450380.1	EMBL	sequence_feature	425847	426413	.	-	.	ID=id-ML0336;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 148.40%2C E-value 1.2e-40;gbkey=misc_feature;gene=ML0336
AL450380.1	EMBL	sequence_feature	426033	426077	.	-	.	ID=id-ML0336-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=ML0336
AL450380.1	EMBL	sequence_feature	426369	426392	.	-	.	ID=id-ML0336-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML0336
AL450380.1	EMBL	gene	426563	427471	.	-	.	ID=gene-ML0337;Name=ML0337;gbkey=Gene;gene=ML0337;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	426563	427471	.	-	0	ID=cds-CAC29845.1;Parent=gene-ML0337;Dbxref=GOA:Q9CCV9,InterPro:IPR006127,UniProtKB/TrEMBL:Q9CCV9,NCBI_GP:CAC29845.1;Name=CAC29845.1;Note=Shows weak similarity to periplasmic solute-binding proteins e.g. Synechocystis sp. (strain PCC 6803) mntC%2C periplasmic-binding protein%2C TR:Q55280 (EMBL:L34630) (330 aa)%3B Fasta score E(): 0.0001%2C 26.4%25 identity in 178 aa overlap. Contains a possible N-terminal signal sequence. Contains Pfam match to entry PF01297 Lipoprotein_4%2C Adhesion lipoprotein. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=ML0337;product=putative periplasmic solute-binding proteins;protein_id=CAC29845.1;transl_table=11
AL450380.1	EMBL	sequence_feature	426584	427450	.	-	.	ID=id-ML0337;Note=Pfam match to entry PF01297 Lipoprotein_4%2C Adhesion lipoprotein%2C score 2.70%2C E-value 4.5e-10;gbkey=misc_feature;gene=ML0337
AL450380.1	EMBL	sequence_feature	427412	427444	.	-	.	ID=id-ML0337-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=ML0337
AL450380.1	EMBL	pseudogene	427651	428675	.	+	.	ID=gene-ML0338;Name=ML0338;gbkey=Gene;gene=ML0338;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	427651	428675	.	+	0	ID=cds-ML0338;Parent=gene-ML0338;Note=Possible pseudogene similar to M. tuberculosis orthologue Rv3575c (Best blastx score 220);gbkey=CDS;gene=ML0338;product=transcriptional regulator (LacI family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	428887	429249	.	-	.	ID=gene-ML0339;Name=ML0339;gbkey=Gene;gene=ML0339;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	428887	429249	.	-	0	ID=cds-ML0339;Parent=gene-ML0339;Note=Possible pseudogene of M. tuberculosis orthologue Rv3574 (Best blastx score 269);gbkey=CDS;gene=ML0339;product=transcriptional regulator (TetR/AcrR family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	429653	431495	.	+	.	ID=gene-fadE34;Name=fadE34;gbkey=Gene;gene=fadE34;gene_biotype=pseudogene;gene_synonym=ML0340;pseudo=true
AL450380.1	EMBL	CDS	429653	431495	.	+	0	ID=cds-fadE34;Parent=gene-fadE34;Note=Possible pseudogene of M. tuberculosis orthologue fadE34 (Best blastx score 539);gbkey=CDS;gene=fadE34;product=acyl-CoA dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	431727	432218	.	-	.	ID=gene-ML0341;Name=ML0341;gbkey=Gene;gene=ML0341;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	431727	432218	.	-	0	ID=cds-ML0341;Parent=gene-ML0341;Note=Possible pseudogene of M. tuberculosis orthologue Rv3572 (Best blastx score 324);gbkey=CDS;gene=ML0341;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	432323	433323	.	-	.	ID=gene-ML0342;Name=ML0342;gbkey=Gene;gene=ML0342;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	432323	433323	.	-	0	ID=cds-ML0342;Parent=gene-ML0342;Note=Possible pseudogene of M. tuberculosis orthologue Rv3571 (Best blastx score 484);gbkey=CDS;gene=ML0342;product=electron transfer component of (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	433560	434728	.	+	.	ID=gene-ML0343;Name=ML0343;gbkey=Gene;gene=ML0343;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	433560	434728	.	+	0	ID=cds-ML0343;Parent=gene-ML0343;Note=Possible pseudogene of M. tuberculosis orthologue Rv3570c (Best blastx score 413);gbkey=CDS;gene=ML0343;product=putative oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	434746	435270	.	+	.	ID=gene-ML0344;Name=ML0344;gbkey=Gene;gene=ML0344;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	434746	435270	.	+	0	ID=cds-ML0344;Parent=gene-ML0344;Note=Possible pseudogene of M. tuberculosis orthologue Rv3569c (Best blastx score 339);gbkey=CDS;gene=ML0344;product=probable hydrolase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	435602	436741	.	-	.	ID=gene-ML0345;Name=ML0345;gbkey=Gene;gene=ML0345;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	435602	436741	.	-	0	ID=cds-ML0345;Parent=gene-ML0345;Note=Possible pseudogene of M. tuberculosis orthologue Rv3523 (Best blastx score 319);gbkey=CDS;gene=ML0345;product=lipid carrier protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	436783	437194	.	-	.	ID=gene-ML0346;Name=ML0346;gbkey=Gene;gene=ML0346;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	436783	437194	.	-	0	ID=cds-ML0346;Parent=gene-ML0346;Note=Possible pseudogene of M. tuberculosis orthologue Rv3522 (Best blastx score 167);gbkey=CDS;gene=ML0346;product=putative transcriptional regulator (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	437391	437981	.	-	.	ID=gene-ML0347;Name=ML0347;gbkey=Gene;gene=ML0347;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	437391	437981	.	-	0	ID=cds-ML0347;Parent=gene-ML0347;Note=Possible pseudogene of M. tuberculosis orthologue Rv3521 (Best blastx score 236);gbkey=CDS;gene=ML0347;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	438262	439314	.	+	.	ID=gene-ML0348;Name=ML0348;gbkey=Gene;gene=ML0348;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	438262	439314	.	+	0	ID=cds-CAC29856.1;Parent=gene-ML0348;Dbxref=GOA:Q9CCV8,InterPro:IPR011251,InterPro:IPR019951,UniProtKB/TrEMBL:Q9CCV8,NCBI_GP:CAC29856.1;Name=CAC29856.1;Note=Similar to M. tuberculosis Rv3520c%2C possible coenzyme F420-dependent enzyme%2C TR:O53565 (EMBL:AL123456) (347 aa)%3B Fasta score E(): 0%2C 86.8%25 identity in 342 aa overlap. Shows weak similarity to Methanobacterium thermoautotrophicum mer%2C methylenetetrahydromethanopterin reductase%2C TR:Q50744 (EMBL:X86477) (321 aa)%3B Fasta score E(): 2.8e-05%2C 27.1%25 identity in 332 aa overlap.;gbkey=CDS;gene=ML0348;product=possible coenzyme F420-dependent oxidoreductase;protein_id=CAC29856.1;transl_table=11
AL450380.1	EMBL	pseudogene	439393	439704	.	-	.	ID=gene-ML0349;Name=ML0349;gbkey=Gene;gene=ML0349;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	439393	439704	.	-	0	ID=cds-ML0349;Parent=gene-ML0349;Note=Possible pseudogene of M. tuberculosis orthologue Rv3519 (Best blastx score 156);gbkey=CDS;gene=ML0349;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	442415	443185	.	-	.	ID=gene-ML0350;Name=ML0350;gbkey=Gene;gene=ML0350;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	442415	443185	.	-	0	ID=cds-ML0350;Parent=gene-ML0350;Note=Possible pseudogene similar to M. tuberculosis paralogue Rv3729 (Best blastx score 294);gbkey=CDS;gene=ML0350;product=probable transferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	444087	444737	.	-	.	ID=gene-echA19;Name=echA19;gbkey=Gene;gene=echA19;gene_biotype=pseudogene;gene_synonym=ML0351;pseudo=true
AL450380.1	EMBL	CDS	444087	444737	.	-	0	ID=cds-echA19;Parent=gene-echA19;Note=Possible pseudogene of M. tuberculosis orthologue echA19 (Best blastx score 238);gbkey=CDS;gene=echA19;product=enoyl-CoA hydratase/isomerase superfamily (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	444860	445795	.	+	.	ID=gene-fadD19;Name=fadD19;gbkey=Gene;gene=fadD19;gene_biotype=pseudogene;gene_synonym=ML0352;pseudo=true
AL450380.1	EMBL	CDS	444860	445795	.	+	0	ID=cds-fadD19;Parent=gene-fadD19;Note=Possible pseudogene of M. tuberculosis orthologue fadD19 (Best blastx score 221);gbkey=CDS;gene=fadD19;product=acyl-CoA synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	446609	447405	.	+	.	ID=gene-ML0353;Name=ML0353;gbkey=Gene;gene=ML0353;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	446609	447405	.	+	0	ID=cds-ML0353;Parent=gene-ML0353;Note=Possible pseudogene of M. tuberculosis orthologue Rv3510c (Best blastx score 461);gbkey=CDS;gene=ML0353;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	447402	447406	.	+	.	ID=id-AL450380.1:447402..447406;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	447414	448961	.	+	.	ID=gene-ilvX;Name=ilvX;gbkey=Gene;gene=ilvX;gene_biotype=protein_coding;gene_synonym=ML0354
AL450380.1	EMBL	CDS	447414	448961	.	+	0	ID=cds-CAC29862.1;Parent=gene-ilvX;Dbxref=GOA:Q49865,InterPro:IPR011766,InterPro:IPR012001,InterPro:IPR029061,UniProtKB/TrEMBL:Q49865,NCBI_GP:CAC29862.1;Name=CAC29862.1;Note=Similar to M. tuberculosis ilvX%2C putative acetohydroxyacid synthase I large subunit%2C TR:O53554 (EMBL:AL123456) (515 aa)%3B Fasta score E(): 0%2C 82.9%25 identity in 515 aa overlap. Similar to Escherichia coli ilvI%2C acetolactate synthase isozyme III large subunit%2C SW:ILVI_ECOLI (P00893) (574 aa)%3B Fasta score E(): 1.8e-07%2C 23.7%25 identity in 540 aa overlap. Also similar to Pseudomonas putida mdlC%2C benzoylformate decarboxylase%2C SW:MDLC_PSEPU (P20906) (528 aa)%3B Fasta score E(): 6.6e-13%2C 29.3%25 identity in 529 aa overlap. Previously sequenced as TR:Q49865 (EMBL:U00020) (515 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 515 aa overlap. Contains 2 Pfam matches to entry PF00205 TPP_enzymes%2C Thiamine pyrophosphate enzymes.;gbkey=CDS;gene=ilvX;product=putative acetohydroxyacid synthase I large subunit;protein_id=CAC29862.1;transl_table=11
AL450380.1	EMBL	sequence_feature	447444	447710	.	+	.	ID=id-ilvX;Note=Pfam match to entry PF00205 TPP_enzymes%2C Thiamine pyrophosphate enzymes%2C score 47.60%2C E-value 3.5e-14;gbkey=misc_feature;gene=ilvX
AL450380.1	EMBL	sequence_feature	448551	448937	.	+	.	ID=id-ilvX-2;Note=Pfam match to entry PF00205 TPP_enzymes%2C Thiamine pyrophosphate enzymes%2C score 94.50%2C E-value 9.3e-29;gbkey=misc_feature;gene=ilvX
AL450380.1	EMBL	pseudogene	449015	450183	.	-	.	ID=gene-fadD17;Name=fadD17;gbkey=Gene;gene=fadD17;gene_biotype=pseudogene;gene_synonym=ML0355;pseudo=true
AL450380.1	EMBL	CDS	449015	450183	.	-	0	ID=cds-fadD17;Parent=gene-fadD17;Note=Possible pseudogene of M. tuberculosis orthologue fadD17 (Best blastx score 515);gbkey=CDS;gene=fadD17;product=acyl-CoA synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	450363	451273	.	-	.	ID=gene-fadE27;Name=fadE27;gbkey=Gene;gene=fadE27;gene_biotype=pseudogene;gene_synonym=ML0356;pseudo=true
AL450380.1	EMBL	CDS	450363	451273	.	-	0	ID=cds-fadE27;Parent=gene-fadE27;Note=Possible pseudogene of M. tuberculosis orthologue fadE27 (Best blastx score 223);gbkey=CDS;gene=fadE27;product=acyl-CoA dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	451302	452424	.	-	.	ID=gene-fadE26;Name=fadE26;gbkey=Gene;gene=fadE26;gene_biotype=pseudogene;gene_synonym=ML0357;pseudo=true
AL450380.1	EMBL	CDS	451302	452424	.	-	0	ID=cds-fadE26;Parent=gene-fadE26;Note=Possible pseudogene of M. tuberculosis orthologue fadE26 (Best blastx score 551);gbkey=CDS;gene=fadE26;product=acyl-CoA dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	452646	452816	.	+	.	ID=gene-ML0358;Name=ML0358;gbkey=Gene;gene=ML0358;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	452646	452816	.	+	0	ID=cds-ML0358;Parent=gene-ML0358;Note=Possible pseudogene of M. tuberculosis orthologue fdxD (Best blastx score 212);gbkey=CDS;gene=ML0358;product=putative ferredoxin (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	452939	453841	.	+	.	ID=gene-ML0359;Name=ML0359;gbkey=Gene;gene=ML0359;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	452939	453841	.	+	0	ID=cds-ML0359;Parent=gene-ML0359;Note=Possible pseudogene of M. tuberculosis orthologue Rv3502c (Best blastx score 300);gbkey=CDS;gene=ML0359;product=putative dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	454075	454785	.	+	.	ID=gene-ML0360;Name=ML0360;gbkey=Gene;gene=ML0360;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	454075	454785	.	+	0	ID=cds-ML0360;Parent=gene-ML0360;Note=Possible pseudogene of M. tuberculosis orthologue Rv3501c (Best blastx score 493);gbkey=CDS;gene=ML0360;product=part of mce4 operon (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	454840	455649	.	+	.	ID=gene-ML0361;Name=ML0361;gbkey=Gene;gene=ML0361;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	454840	455649	.	+	0	ID=cds-ML0361;Parent=gene-ML0361;Note=Possible pseudogene of M. tuberculosis orthologue Rv3500c (Best blastx score 393);gbkey=CDS;gene=ML0361;product=part of mce4 operon (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	455770	456328	.	+	.	ID=gene-mce4;Name=mce4;gbkey=Gene;gene=mce4;gene_biotype=pseudogene;gene_synonym=ML0362;pseudo=true
AL450380.1	EMBL	CDS	455770	456328	.	+	0	ID=cds-mce4;Parent=gene-mce4;Note=Possible pseudogene of M. tuberculosis orthologue mce4 (Best blastx score 195);gbkey=CDS;gene=mce4;product=cell invasion protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	456418	456732	.	+	.	ID=gene-ML0363;Name=ML0363;gbkey=Gene;gene=ML0363;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	456418	456732	.	+	0	ID=cds-CAC29871.1;Parent=gene-ML0363;Dbxref=InterPro:IPR010310,UniProtKB/TrEMBL:Q9CCV7,NCBI_GP:CAC29871.1;Name=CAC29871.1;Note=Similar to M. tuberculosis Rv3444c%2C esat6-family protein%2C TR:O06261 (EMBL:Al123456) (100 aa)%3B Fasta score E(): 3.3e-20%2C 71.2%25 identity in 73 aa overlap and others of the esat6 family e.g. esat6 itself%2C 6 kDa early secretory antigenic target%2C SW:ESA6_MYCTU (Q57165) (94 aa)%3B Fasta score E(): 1.5%2C 28.4%25 identity in 67 aa overlap.;gbkey=CDS;gene=ML0363;product=possible secreted protein;protein_id=CAC29871.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	456971	456976	.	+	.	ID=id-AL450380.1:456971..456976;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	456984	457427	.	+	.	ID=gene-rplM;Name=rplM;gbkey=Gene;gene=rplM;gene_biotype=protein_coding;gene_synonym=ML0364
AL450380.1	EMBL	CDS	456984	457427	.	+	0	ID=cds-CAC29872.1;Parent=gene-rplM;Dbxref=GOA:P38014,InterPro:IPR005822,InterPro:IPR005823,InterPro:IPR023563,InterPro:IPR023564,NCBI_GP:CAC29872.1;Name=CAC29872.1;Note=Similar to M. tuberculosis rplM%2C 50S ribosomal protein L13%2C SW:RL13_MYCTU (O06260) (147 aa)%3B Fasta score E(): 0%2C 91.2%25 identity in 147 aa overlap. Previuosly sequenced as SW:RL13_MYCLE (P38014) (147 aa)%3B Fasta score E(): 0%2C 99.3%25 identity in 147 aa overlap. Contains Pfam match to entry PF00572 Ribosomal_L13%2C Ribosomal protein L13. Contains PS00783 Ribosomal protein L13 signature.;gbkey=CDS;gene=rplM;product=50S ribosomal protein L13;protein_id=CAC29872.1;transl_table=11
AL450380.1	EMBL	sequence_feature	457026	457409	.	+	.	ID=id-rplM;Note=Pfam match to entry PF00572 Ribosomal_L13%2C Ribosomal protein L13%2C score 289.30%2C E-value 4.7e-83;gbkey=misc_feature;gene=rplM
AL450380.1	EMBL	sequence_feature	457296	457364	.	+	.	ID=id-rplM-2;Note=PS00783 Ribosomal protein L13 signature;gbkey=misc_feature;gene=rplM
AL450380.1	EMBL	gene	457424	457885	.	+	.	ID=gene-rpsI;Name=rpsI;gbkey=Gene;gene=rpsI;gene_biotype=protein_coding;gene_synonym=ML0365
AL450380.1	EMBL	CDS	457424	457885	.	+	0	ID=cds-CAC29873.1;Parent=gene-rpsI;Dbxref=GOA:P40828,InterPro:IPR000754,InterPro:IPR014721,InterPro:IPR020568,InterPro:IPR020574,InterPro:IPR023035,NCBI_GP:CAC29873.1;Name=CAC29873.1;Note=Similar to M. tuberculosis rpsI%2C 30S ribosomal protein S9%2C SW:RS9_MYCTU (O06259) (151 aa)%3B Fasta score E(): 0%2C 83.2%25 identity in 155 aa overlap. Previously sequenced as SW:RS9_MYCLE (P40828) (153 aa)%3B Fasta score E(): 0%2C 99.3%25 identity in 153 aa overlap. Contains Pfam match to entry PF00380 Ribosomal_S9%2C Ribosomal protein S9/S16. Contains PS00360 Ribosomal protein S9 signature.;gbkey=CDS;gene=rpsI;product=30S ribosomal protein S9;protein_id=CAC29873.1;transl_table=11
AL450380.1	EMBL	sequence_feature	457520	457882	.	+	.	ID=id-rpsI;Note=Pfam match to entry PF00380 Ribosomal_S9%2C Ribosomal protein S9/S16%2C score 250.20%2C E-value 3.2e-77;gbkey=misc_feature;gene=rpsI
AL450380.1	EMBL	sequence_feature	457697	457753	.	+	.	ID=id-rpsI-2;Note=PS00360 Ribosomal protein S9 signature;gbkey=misc_feature;gene=rpsI
AL450380.1	EMBL	ribosome_entry_site	457979	457983	.	+	.	ID=id-AL450380.1:457979..457983;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	457992	459383	.	+	.	ID=gene-mrsA;Name=mrsA;gbkey=Gene;gene=mrsA;gene_biotype=protein_coding;gene_synonym=ML0366
AL450380.1	EMBL	CDS	457992	459383	.	+	0	ID=cds-CAC29874.1;Parent=gene-mrsA;Dbxref=GOA:Q49869,InterPro:IPR005841,InterPro:IPR005843,InterPro:IPR005844,InterPro:IPR005845,InterPro:IPR005846,InterPro:IPR006352,InterPro:IPR016055,InterPro:IPR016066,NCBI_GP:CAC29874.1;Name=CAC29874.1;Note=Similar to M. tuberculosis mrsA%2C Rv3441c%2C phosphoglucomutase or phosphomannomutase%2C TR:O06258 (EMBL:AL123456) (448 aa)%3B Fasta score E(): 0%2C 87.6%25 identity in 445 aa overlap. Similar to many e.g. Salmonella typhimurium manB%2C phosphomannomutase%2C SW:MANB_SALTY (P26341) (264 aa)%3B BlastP Expect 9.5. Previously sequenced as TR:Q49869 (EMBL:U00020) (463 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 463 aa overlap. Contains Pfam match to entry PF00408 PGM_PMM%2C Phosphoglucomutase/phosphomannomutase. Contains PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature.%3B~Similar to ML0706 and ML0763;gbkey=CDS;gene=mrsA;product=putative phosphoglucomutase/phosphomannomutase;protein_id=CAC29874.1;transl_table=11
AL450380.1	EMBL	sequence_feature	457992	459284	.	+	.	ID=id-mrsA;Note=Pfam match to entry PF00408 PGM_PMM%2C Phosphoglucomutase/phosphomannomutase%2C score 339.10%2C E-value 4.8e-98;gbkey=misc_feature;gene=mrsA
AL450380.1	EMBL	sequence_feature	458277	458321	.	+	.	ID=id-mrsA-2;Note=PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature;gbkey=misc_feature;gene=mrsA
AL450380.1	EMBL	pseudogene	459447	459648	.	+	.	ID=gene-ML0367;Name=ML0367;gbkey=Gene;gene=ML0367;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	459447	459648	.	+	0	ID=cds-ML0367;Parent=gene-ML0367;Note=Possible pseudogene of M. tuberculosis orthologue Rv3440c (Best blastx score 104);gbkey=CDS;gene=ML0367;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	459675	460544	.	+	.	ID=gene-ML0368;Name=ML0368;gbkey=Gene;gene=ML0368;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	459675	460544	.	+	0	ID=cds-ML0368;Parent=gene-ML0368;Note=Possible pseudogene of M. tuberculosis orthologue Rv3439c (Best blastx score 221);gbkey=CDS;gene=ML0368;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	461185	461541	.	-	.	ID=gene-ML0369;Name=ML0369;gbkey=Gene;gene=ML0369;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	461185	461541	.	-	0	ID=cds-CAC29877.1;Parent=gene-ML0369;Dbxref=UniProtKB/TrEMBL:Q49877,NCBI_GP:CAC29877.1;Name=CAC29877.1;Note=Unknown function. Previously sequenced as TR:Q49877 (EMBL:U00020) (118 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 118 aa overlap.;gbkey=CDS;gene=ML0369;product=hypothetical protein;protein_id=CAC29877.1;transl_table=11
AL450380.1	EMBL	gene	461945	462814	.	-	.	ID=gene-ML0370;Name=ML0370;gbkey=Gene;gene=ML0370;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	461945	462814	.	-	0	ID=cds-CAC29878.1;Parent=gene-ML0370;Dbxref=InterPro:IPR029058,InterPro:IPR029059,UniProtKB/TrEMBL:Q9CCV6,NCBI_GP:CAC29878.1;Name=CAC29878.1;Note=Similar to M. tuberculosis Rv3438%2C conserved hypothetical protein%2C TR:O06255 (EMBL:AL123456) (280 aa)%3B Fasta score E(): 0%2C 80.6%25 identity in 279 aa overlap. Previously sequenced as TR:Q49872 (EMBL:U00020) (324 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 289 aa overlap. Contains PS00107 Protein kinases ATP-binding region signature.;gbkey=CDS;gene=ML0370;product=conserved hypothetical protein;protein_id=CAC29878.1;transl_table=11
AL450380.1	EMBL	sequence_feature	462365	462442	.	-	.	ID=id-ML0370;Note=PS00107 Protein kinases ATP-binding region signature;gbkey=misc_feature;gene=ML0370
AL450380.1	EMBL	gene	462979	464856	.	+	.	ID=gene-glmS;Name=glmS;gbkey=Gene;gene=glmS;gene_biotype=protein_coding;gene_synonym=ML0371
AL450380.1	EMBL	CDS	462979	464856	.	+	0	ID=cds-CAC29879.1;Parent=gene-glmS;Dbxref=GOA:P40831,InterPro:IPR001347,InterPro:IPR005855,InterPro:IPR017932,InterPro:IPR029055,NCBI_GP:CAC29879.1;Name=CAC29879.1;Note=Similar to M. tuberculosis glmS%2C Rv3436c%2C putative glucosamine-fructose-6-phosphate aminotransferase%2C SW:GLMS_MYCTU (O06253) (623 aa)%3B Fasta score E(): 0%2C 89.3%25 identity in 627 aa overlap. Similar to many e.g. Rhizobium leguminosarum nodM%2C glucosamine--fructose-6-phosphate aminotransferase%2C SW:NODM_RHILV (P08633) (607 aa)%3B Fasta score E(): 0%2C 44.0%25 identity in 629 aa overlap. Previously sequenced as SW:GLMS_MYCLE (P40831) (624 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 624 aa overlap. Contains Pfam match to entry PF00310 GATase_2%2C Glutamine amidotransferases class-II. Contains 2 Pfam matches to entry PF01380 SIS%2C SIS domain.;gbkey=CDS;gene=glmS;product=putative glucosamine-fructose-6-phosphate aminotransferase;protein_id=CAC29879.1;transl_table=11
AL450380.1	EMBL	sequence_feature	462982	463557	.	+	.	ID=id-glmS;Note=Pfam match to entry PF00310 GATase_2%2C Glutamine amidotransferases class-II%2C score 213.60%2C E-value 3e-72;gbkey=misc_feature;gene=glmS
AL450380.1	EMBL	sequence_feature	463873	464277	.	+	.	ID=id-glmS-2;Note=Pfam match to entry PF01380 SIS%2C SIS domain%2C score 183.00%2C E-value 4.8e-51;gbkey=misc_feature;gene=glmS
AL450380.1	EMBL	sequence_feature	464389	464811	.	+	.	ID=id-glmS-3;Note=Pfam match to entry PF01380 SIS%2C SIS domain%2C score 148.10%2C E-value 1.5e-40;gbkey=misc_feature;gene=glmS
AL450380.1	EMBL	pseudogene	464951	465073	.	-	.	ID=gene-ML0372;Name=ML0372;gbkey=Gene;gene=ML0372;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	464951	465073	.	-	0	ID=cds-ML0372;Parent=gene-ML0372;Note=Possible pseudogene of M. tuberculosis orthologue Rv0893c (Best blastx score 92);gbkey=CDS;gene=ML0372;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	465202	466623	.	+	.	ID=gene-ML0373;Name=ML0373;gbkey=Gene;gene=ML0373;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	465202	466623	.	+	0	ID=cds-CAC29881.1;Parent=gene-ML0373;Dbxref=GOA:P37391,InterPro:IPR000631,InterPro:IPR004443,InterPro:IPR017953,InterPro:IPR029056,NCBI_GP:CAC29881.1;Name=CAC29881.1;Note=Similar to M. tuberculosis Rv3433c%2C conserved hypothetical protein%2C SW:YY33_MYCTU (O06250) (473 aa)%3B Fasta score E(): 0%2C 84.6%25 identity in 473 aa overlap. Similar to many bacterial hypothetical proteins. Previuosly sequenced as SW:YY33_MYCLE (P37391) (392 aa)%3B Fasta score E(): 0%2C 94.5%25 identity in 381 aa overlap. Contains Pfam match to entry PF01256 UPF0031%2C Uncharacterized protein family UPF0031. Contains PS01049 Uncharacterized protein family UPF0031 signature 1. Contains PS01050 Uncharacterized protein family UPF0031 signature 2.;gbkey=CDS;gene=ML0373;product=conserved hypothetical protein;protein_id=CAC29881.1;transl_table=11
AL450380.1	EMBL	sequence_feature	465898	466596	.	+	.	ID=id-ML0373;Note=Pfam match to entry PF01256 UPF0031%2C Uncharacterized protein family UPF0031%2C score 319.30%2C E-value 4.6e-92;gbkey=misc_feature;gene=ML0373
AL450380.1	EMBL	sequence_feature	466075	466107	.	+	.	ID=id-ML0373-2;Note=PS01049 Uncharacterized protein family UPF0031 signature 1;gbkey=misc_feature;gene=ML0373
AL450380.1	EMBL	sequence_feature	466423	466455	.	+	.	ID=id-ML0373-3;Note=PS01050 Uncharacterized protein family UPF0031 signature 2;gbkey=misc_feature;gene=ML0373
AL450380.1	EMBL	pseudogene	466653	468022	.	+	.	ID=gene-gadB;Name=gadB;gbkey=Gene;gene=gadB;gene_biotype=pseudogene;gene_synonym=ML0374;pseudo=true
AL450380.1	EMBL	CDS	466653	468022	.	+	0	ID=cds-gadB;Parent=gene-gadB;Note=Possible pseudogene of M. tuberculosis orthologue gadB (Best blastx score 527);gbkey=CDS;gene=gadB;product=glutamate decarboxylase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	468117	468121	.	+	.	ID=id-AL450380.1:468117..468121;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	468132	469298	.	+	.	ID=gene-alr;Name=alr;gbkey=Gene;gene=alr;gene_biotype=protein_coding;gene_synonym=ML0375
AL450380.1	EMBL	CDS	468132	469298	.	+	0	ID=cds-CAC29883.1;Parent=gene-alr;Dbxref=GOA:P38056,InterPro:IPR000821,InterPro:IPR001608,InterPro:IPR009006,InterPro:IPR011079,InterPro:IPR020622,InterPro:IPR029066,NCBI_GP:CAC29883.1;Name=CAC29883.1;Note=Similar to M. tuberculosis alr%2C Rv3423c%2C putative alanine racemase%2C SW:ALR_MYCTU (Q50705) (384 aa)%3B Fasta score E(): 0%2C 84.6%25 identity in 382 aa overlap. Similar to many e.g. Mycobacterium smegmatis alr%2C alanine racemase%2C SW:ALR_MYCSM (P94967) (389 aa)%3B Fasta score E(): 0%2C 67.2%25 identity in 378 aa overlap. Previously sequenced as SW:ALR_MYCLE (P38056) (388 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 388 aa overlap. Contains 2 Pfam matches to entry PF00842 Ala_racemase%2C Alanine racemase.;gbkey=CDS;gene=alr;product=putative alanine racemase;protein_id=CAC29883.1;transl_table=11
AL450380.1	EMBL	sequence_feature	468243	468395	.	+	.	ID=id-alr;Note=Pfam match to entry PF00842 Ala_racemase%2C Alanine racemase%2C score 72.80%2C E-value 5.6e-19;gbkey=misc_feature;gene=alr
AL450380.1	EMBL	sequence_feature	468534	469274	.	+	.	ID=id-alr-2;Note=Pfam match to entry PF00842 Ala_racemase%2C Alanine racemase%2C score 245.40%2C E-value 8.1e-70;gbkey=misc_feature;gene=alr
AL450380.1	EMBL	gene	469288	470289	.	+	.	ID=gene-ML0376;Name=ML0376;gbkey=Gene;gene=ML0376;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	469288	470289	.	+	0	ID=cds-CAC29884.1;Parent=gene-ML0376;Dbxref=InterPro:IPR029058,UniProtKB/TrEMBL:Q9CCV4,NCBI_GP:CAC29884.1;Name=CAC29884.1;Note=Unknown function. Contains hydrophobic%2C possible membrane-spanning region near the N-terminus.;gbkey=CDS;gene=ML0376;product=putative membrane protein;protein_id=CAC29884.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	470263	470267	.	+	.	ID=id-ML0376;Parent=gene-ML0376;Note=possible RBS;gbkey=regulatory;gene=ML0376;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	470282	470767	.	+	.	ID=gene-ML0377;Name=ML0377;gbkey=Gene;gene=ML0377;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	470282	470767	.	+	0	ID=cds-CAC29885.1;Parent=gene-ML0377;Dbxref=GOA:Q49864,InterPro:IPR003442,InterPro:IPR027417,NCBI_GP:CAC29885.1;Name=CAC29885.1;Note=Similar to M. tuberculosis Rv3422c%2C conserved hypothetical protein%2C SW:YY22_MYCTU (Q50706) (168 aa)%3B Fasta score E(): 0%2C 77.4%25 identity in 146 aa overlap. Similar to many other bacterial hypothetical proteins. Previously sequenced as SW:YY22_MYCLE (Q49864) (161 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 161 aa overlap. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML0377;product=CAC29885.1;protein_id=CAC29885.1;transl_table=11
AL450380.1	EMBL	sequence_feature	470399	470422	.	+	.	ID=id-ML0377;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML0377
AL450380.1	EMBL	gene	470764	471843	.	+	.	ID=gene-ML0378;Name=ML0378;gbkey=Gene;gene=ML0378;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	470764	471843	.	+	0	ID=cds-CAC29886.1;Parent=gene-ML0378;Dbxref=GOA:Q49857,InterPro:IPR000182,InterPro:IPR000905,InterPro:IPR006464,InterPro:IPR016181,InterPro:IPR022496,NCBI_GP:CAC29886.1;Name=CAC29886.1;Note=Similar to M. tuberculosis rimI%2C Rv3420c%2C putative ribosomal protein S18 acetyltransferase%2C TR:Q50708 (EMBL:Z77165) (158 aa)%3B Fasta score E(): 0%2C 72.1%25 identity in 154 aa overlap in the C-terminus and to M. tuberculosis Rv3421c hypothetical protein%2C SW:YY21_MYCTU (Q50707) (211 aa)%3B Fasta score E(): 0%2C 75.6%25 identity in 205 aa overlap in the N-terminus. Appears to be a fusion of two M. tuberculosis homologues. Similar to many hypothetical acetyltransferases. Previously sequenced as SW:YY21_MYCLE (Q49857) (359 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 359 aa overlap. Contains Pfam match to entry PF00583 Acetyltransf%2C Acetyltransferase (GNAT) family.;gbkey=CDS;gene=ML0378;product=putative acetyltransferase;protein_id=CAC29886.1;transl_table=11
AL450380.1	EMBL	sequence_feature	471403	471768	.	+	.	ID=id-ML0378;Note=Pfam match to entry PF00583 Acetyltransf%2C Acetyltransferase (GNAT) family%2C score 69.60%2C E-value 6.8e-17;gbkey=misc_feature;gene=ML0378
AL450380.1	EMBL	ribosome_entry_site	471831	471835	.	+	.	ID=id-ML0378-2;Parent=gene-ML0378;Note=possible RBS;gbkey=regulatory;gene=ML0378;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	471840	472895	.	+	.	ID=gene-gcp;Name=gcp;gbkey=Gene;gene=gcp;gene_biotype=protein_coding;gene_synonym=ML0379
AL450380.1	EMBL	CDS	471840	472895	.	+	0	ID=cds-CAC29887.1;Parent=gene-gcp;Dbxref=GOA:P37969,InterPro:IPR000905,InterPro:IPR017860,InterPro:IPR017861,InterPro:IPR022450,NCBI_GP:CAC29887.1;Name=CAC29887.1;Note=Similar to M. tuberculosis gcp%2C putative O-sialoglycoprotein endopeptidase%2C SW:GCP_MYCTU (Q50709) (344 aa)%3B Fasta score E(): 0%2C 86.1%25 identity in 345 aa overlap. Similar to many e.g. Pasteurella haemolytica gcp%2C O-sialoglycoprotein endopeptidase%2C SW:GCP_PASHA (P36175) (325 aa)%3B Fasta score E(): 0%2C 45.8%25 identity in 319 aa overlap. previously sequenced as SW:GCP_MYCLE (P37969) (351 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 351 aa overlap. Contains Pfam match to entry PF00814 Peptidase_M22%2C Glycoprotease family. Contains PS01016 Glycoprotease family signature.;gbkey=CDS;gene=gcp;product=putative O-sialoglycoprotein endopeptidase;protein_id=CAC29887.1;transl_table=11
AL450380.1	EMBL	sequence_feature	471864	472820	.	+	.	ID=id-gcp;Note=Pfam match to entry PF00814 Peptidase_M22%2C Glycoprotease family%2C score 601.80%2C E-value 4e-177;gbkey=misc_feature;gene=gcp
AL450380.1	EMBL	sequence_feature	472164	472226	.	+	.	ID=id-gcp-2;Note=PS01016 Glycoprotease family signature;gbkey=misc_feature;gene=gcp
AL450380.1	EMBL	ribosome_entry_site	473163	473167	.	+	.	ID=id-AL450380.1:473163..473167;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	473177	473479	.	+	.	ID=gene-groES;Name=groES;gbkey=Gene;gene=groES;gene_biotype=protein_coding;gene_synonym=ML0380
AL450380.1	EMBL	CDS	473177	473479	.	+	0	ID=cds-CAC29888.1;Parent=gene-groES;Dbxref=GOA:P24301,InterPro:IPR011032,InterPro:IPR018369,InterPro:IPR020818,PDB:1LEP,NCBI_GP:CAC29888.1;Name=CAC29888.1;Note=Similar to M. tuberculosis groES%2C 10 kD chaperonin%2C SW:CH10_MYCTU (P09621) (99 aa)%3B Fasta score E(): 3.6e-32%2C 89.9%25 identity in 99 aa overlap. Previously sequenced as SW:CH10_MYCLE (P24301) (99 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 99 aa overlap. Contains Pfam match to entry PF00166 cpn10%2C Chaperonins 10 Kd subunit. Contains PS00681 Chaperonins cpn10 signature.;gbkey=CDS;gene=groES;product=10 kD chaperonin;protein_id=CAC29888.1;transl_table=11
AL450380.1	EMBL	sequence_feature	473186	473473	.	+	.	ID=id-groES;Note=Pfam match to entry PF00166 cpn10%2C Chaperonins 10 Kd subunit%2C score 180.70%2C E-value 2.4e-50;gbkey=misc_feature;gene=groES
AL450380.1	EMBL	sequence_feature	473192	473266	.	+	.	ID=id-groES-2;Note=PS00681 Chaperonins cpn10 signature;gbkey=misc_feature;gene=groES
AL450380.1	EMBL	ribosome_entry_site	473547	473553	.	+	.	ID=id-AL450380.1:473547..473553;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	473558	475171	.	+	.	ID=gene-groEL1;Name=groEL1;gbkey=Gene;gene=groEL1;gene_biotype=protein_coding;gene_synonym=ML0381
AL450380.1	EMBL	CDS	473558	475171	.	+	0	ID=cds-CAC29889.1;Parent=gene-groEL1;Dbxref=GOA:P37578,InterPro:IPR001844,InterPro:IPR002423,InterPro:IPR018370,InterPro:IPR027409,InterPro:IPR027413,NCBI_GP:CAC29889.1;Name=CAC29889.1;Note=Similar to M. tuberculosis groEL1%2C 60 kDa chaperonin 1%2C SW:CH61_MYCTU (Q59573) (539 aa)%3B Fasta score E(): 0%2C 82.9%25 identity in 539 aa overlap. Previously sequenced as SW:CH61_MYCLE (P37578) (537 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 537 aa overlap. Contains Pfam match to entry PF00118 cpn60_TCP1%2C TCP-1/cpn60 chaperonin family. Contains PS00296 Chaperonins cpn60 signature.;gbkey=CDS;gene=groEL1;product=60 kDa chaperonin 1;protein_id=CAC29889.1;transl_table=11
AL450380.1	EMBL	sequence_feature	473621	475129	.	+	.	ID=id-groEL1;Note=Pfam match to entry PF00118 cpn60_TCP1%2C TCP-1/cpn60 chaperonin family%2C score 825.30%2C E-value 2.2e-244;gbkey=misc_feature;gene=groEL1
AL450380.1	EMBL	sequence_feature	474764	474799	.	+	.	ID=id-groEL1-2;Note=PS00296 Chaperonins cpn60 signature;gbkey=misc_feature;gene=groEL1
AL450380.1	EMBL	gene	475771	476079	.	-	.	ID=gene-whiB3;Name=whiB3;gbkey=Gene;gene=whiB3;gene_biotype=protein_coding;gene_synonym=ML0382
AL450380.1	EMBL	CDS	475771	476079	.	-	0	ID=cds-CAC29890.1;Parent=gene-whiB3;Dbxref=GOA:Q49871,InterPro:IPR003482,UniProtKB/TrEMBL:Q49871,NCBI_GP:CAC29890.1;Name=CAC29890.1;Note=Similar to M. tuberculosis whiB3%2C Rv3416%2C putative regulatory protein%2C TR:Q50710 (EMBL:AL123456) (102 aa)%3B Fasta score E(): 0%2C 86.3%25 identity in 102 aa overlap. Similar to many e.g. Streptomyces coelicolor whiD%2C developmental regulatory gene%2C TR:O88103 (EMBL:AJ010601) (112 aa)%3B Fasta score E(): 1.1e-24%2C 61.8%25 identity in 102 aa overlap. Previously sequenced as TR:Q49871 (EMBL:U00015) (102 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 102 aa overlap.%3B~Similar to ML0760%2C ML0804 and ML2307;gbkey=CDS;gene=whiB3;product=putative transcriptional regulator;protein_id=CAC29890.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	476089	476093	.	-	.	ID=id-AL450380.1:476089..476093;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	476440	477285	.	+	.	ID=gene-ML0383;Name=ML0383;gbkey=Gene;gene=ML0383;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	476440	477285	.	+	0	ID=cds-CAC29891.1;Parent=gene-ML0383;Dbxref=UniProtKB/TrEMBL:Q9CCV3,NCBI_GP:CAC29891.1;Name=CAC29891.1;Note=Similar to M. tuberculosis Rv3415c%2C conserved hypothetical protein%2C TR:Q50711 (EMBL:AL123456) (275 aa)%3B Fasta score E(): 0%2C 73.6%25 identity in 277 aa overlap. Previously sequenced as TR:Q49858 (EMBL:U00020) (264 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 263 aa overlap.;gbkey=CDS;gene=ML0383;product=conserved hypothetical protein;protein_id=CAC29891.1;transl_table=11
AL450380.1	EMBL	pseudogene	477371	477955	.	+	.	ID=gene-sigD;Name=sigD;gbkey=Gene;gene=sigD;gene_biotype=pseudogene;gene_synonym=ML0384;pseudo=true
AL450380.1	EMBL	CDS	477371	477955	.	+	0	ID=cds-sigD;Parent=gene-sigD;Note=Possible pseudogene of M. tuberculosis orthologue sigD (Best blastx score 312);gbkey=CDS;gene=sigD;product=ECF subfamily sigma subunit (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	477951	478698	.	+	.	ID=gene-ML0385;Name=ML0385;gbkey=Gene;gene=ML0385;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	477951	478698	.	+	0	ID=cds-ML0385;Parent=gene-ML0385;Note=Possible pseudogene of M. tuberculosis orthologue Rv3413c (Best blastx score 318);gbkey=CDS;gene=ML0385;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	480093	480506	.	-	.	ID=gene-ML0386;Name=ML0386;gbkey=Gene;gene=ML0386;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	480093	480506	.	-	0	ID=cds-CAC29894.1;Parent=gene-ML0386;Dbxref=NCBI_GP:CAC29894.1;Name=CAC29894.1;Note=Similar to M. tuberculosis Rv3412%2C conserved hypothetical protein%2C SW:YY12_MYCTU (Q50714) (136 aa)%3B Fasta score E(): 0%2C 93.4%25 identity in 136 aa overlap. Previously sequenced as SW:YY12_MYCLE (Q49742) (137 aa)%3B Fasta score E(): 0%2C 99.3%25 identity in 137 aa overlap.;gbkey=CDS;gene=ML0386;product=conserved hypothetical protein;protein_id=CAC29894.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	480647	480651	.	+	.	ID=id-AL450380.1:480647..480651;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	480661	482250	.	+	.	ID=gene-guaB2;Name=guaB2;gbkey=Gene;gene=guaB2;gene_biotype=protein_coding;gene_synonym=ML0387
AL450380.1	EMBL	CDS	480661	482250	.	+	0	ID=cds-CAC29895.1;Parent=gene-guaB2;Dbxref=GOA:Q49729,InterPro:IPR000644,InterPro:IPR001093,InterPro:IPR005990,InterPro:IPR013785,InterPro:IPR015875,NCBI_GP:CAC29895.1;Name=CAC29895.1;Note=Similar to M. tuberculosis guaB2%2C Rv3411c%2C putative inosine-5'-monophosphate dehydrogenase%2C SW:IMDH_MYCTU (Q50715) (529 aa)%3B Fasta score E(): 0%2C 92.4%25 identity in 529 aa overlap. Similar to many e.g. Escherichia coli guaB%2C inosine-5'-monophosphate dehydrogenase%2C SW:IMDH_ECOLI (P06981) (488 aa)%3B Fasta score E(): 0%2C 54.3%25 identity in 490 aa overlap. Previously sequenced as SW:IMDH_MYCLE (Q49729) (529 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 529 aa overlap. Contains 2 Pfam matches to entry PF00571 CBS%2C CBS domain. Contains Pfam match to entry PF00478 IMPDH_C%2C IMP dehydrogenase / GMP reductase C terminus. Contains Pfam match to entry PF01574 IMPDH_N%2C IMP dehydrogenase / GMP reductase N terminus.%3B~Similar to ML2066 and shows weaker similarity to ML0388;gbkey=CDS;gene=guaB2;product=putative inosine-5'-monophosphate dehydrogenase;protein_id=CAC29895.1;transl_table=11
AL450380.1	EMBL	sequence_feature	480772	481035	.	+	.	ID=id-guaB2;Note=Pfam match to entry PF01574 IMPDH_N%2C IMP dehydrogenase / GMP reductase N terminus%2C score 193.40%2C E-value 3.5e-54;gbkey=misc_feature;gene=guaB2
AL450380.1	EMBL	sequence_feature	481039	481200	.	+	.	ID=id-guaB2-2;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 43.40%2C E-value 5.1e-09;gbkey=misc_feature;gene=guaB2
AL450380.1	EMBL	sequence_feature	481222	481383	.	+	.	ID=id-guaB2-3;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 40.90%2C E-value 2.9e-08;gbkey=misc_feature;gene=guaB2
AL450380.1	EMBL	sequence_feature	481471	482160	.	+	.	ID=id-guaB2-4;Note=Pfam match to entry PF00478 IMPDH_C%2C IMP dehydrogenase / GMP reductase C terminus%2C score 348.80%2C E-value 5.9e-101;gbkey=misc_feature;gene=guaB2
AL450380.1	EMBL	gene	482274	483386	.	+	.	ID=gene-guaB3;Name=guaB3;gbkey=Gene;gene=guaB3;gene_biotype=protein_coding;gene_synonym=ML0388
AL450380.1	EMBL	CDS	482274	483386	.	+	0	ID=cds-CAC29896.1;Parent=gene-guaB3;Dbxref=GOA:Q49721,InterPro:IPR001093,InterPro:IPR005992,InterPro:IPR013785,NCBI_GP:CAC29896.1;Name=CAC29896.1;Note=Similar to M. tuberculosis guaB3%2C Rv3410c%2C putative inosine-5'-monophosphate dehydrogenase%2C SW:YY10_MYCTU (Q50716) (375 aa)%3B Fasta score E(): 0%2C 90.5%25 identity in 368 aa overlap. This ORF is similar in part to ML0387 and ML2066%2C which more closely resemble the experimentally characterised IMP-DH's (e.g. from Escherichia coli). This shorter homologue is conserved in several bacterial genera. Previously sequenced as SW:YY10_MYCLE (U00015) (375 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 370 aa overlap. Contains Pfam match to entry PF00478 IMPDH_C%2C IMP dehydrogenase / GMP reductase C terminus.%3B~Shows weak similarity to ML0387 and ML2066;gbkey=CDS;gene=guaB3;product=putative inosine-5'-monophosphate dehydrogenase;protein_id=CAC29896.1;transl_table=11
AL450380.1	EMBL	sequence_feature	482712	483368	.	+	.	ID=id-guaB3;Note=Pfam match to entry PF00478 IMPDH_C%2C IMP dehydrogenase / GMP reductase C terminus%2C score -16.40%2C E-value 3.7e-06;gbkey=misc_feature;gene=guaB3
AL450380.1	EMBL	gene	483451	485160	.	+	.	ID=gene-choD;Name=choD;gbkey=Gene;gene=choD;gene_biotype=protein_coding;gene_synonym=ML0389
AL450380.1	EMBL	CDS	483451	485160	.	+	0	ID=cds-CAC29897.1;Parent=gene-choD;Dbxref=GOA:Q9CCV1,InterPro:IPR007867,UniProtKB/TrEMBL:Q9CCV1,NCBI_GP:CAC29897.1;Name=CAC29897.1;Note=Similar to M. tuberculosis choD%2C Rv3409c%2C putative cholesterol oxidase%2C TR:Q57307 (EMBL:Al123456) (578 aa)%3B Fasta score E(): 0%2C 88.6%25 identity in 569 aa overlap. Similar to Streptomyces sp. (strain SA-COO) choA%2C cholesterol oxidase precursor%2C SW:CHOD_STRSQ (P12676) (546 aa)%3B Fasta score E(): 0.013%2C 26.6%25 identity in 561 aa overlap. Previously sequenced as TR:Q59530 (EMBL:U00015) (585 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 569 aa overlap.;gbkey=CDS;gene=choD;product=putative cholesterol oxidase;protein_id=CAC29897.1;transl_table=11
AL450380.1	EMBL	pseudogene	485208	485600	.	-	.	ID=gene-ML0390;Name=ML0390;gbkey=Gene;gene=ML0390;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	485208	485600	.	-	0	ID=cds-ML0390;Parent=gene-ML0390;Note=Possible pseudogene of M. tuberculosis orthologue Rv3406 (Best blastx score 382);gbkey=CDS;gene=ML0390;product=possibe dioxygenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	485789	486124	.	+	.	ID=gene-ML0391;Name=ML0391;gbkey=Gene;gene=ML0391;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	485789	486124	.	+	0	ID=cds-ML0391;Parent=gene-ML0391;Note=Possible pseudogene of M. tuberculosis orthologue Rv3405c (Best blastx score 162);gbkey=CDS;gene=ML0391;product=putative transcriptional regulator (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	486263	488641	.	-	.	ID=gene-ML0392;Name=ML0392;gbkey=Gene;gene=ML0392;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	486263	488641	.	-	0	ID=cds-CAC29900.1;Parent=gene-ML0392;Dbxref=GOA:Q49736,InterPro:IPR005194,InterPro:IPR005195,InterPro:IPR005196,InterPro:IPR008928,InterPro:IPR011013,InterPro:IPR012341,InterPro:IPR017045,NCBI_GP:CAC29900.1;Name=CAC29900.1;Note=Similar to M. tuberculosis Rv3401%2C conserved hypothetical protein%2C SW:YY01_MYCTU (Q50724) (786 aa)%3B Fasta score E(): 0%2C 91.4%25 identity in 782 aa overlap. Shows weak similarity to Lactobacillus sanfranciscensis mapA%2C maltose phosphorylase%2C TR:O87772 (EMBL:AJ224340) (753 aa)%3B Fasta score E(): 1.4e-13%2C 29.0%25 identity in 769 aa overlap. Similar to many bacterial hypothetical proteins e.g. Streptomyces coelicolor SCF42.31C%2C putative glycosyl transferase%2C TR:CAB69693 (EMBL:AL137165) (792 aa)%3B Fasta score E(): 0%2C 58.9%25 identity in 790 aa overlap. Previously sequenced as SW:YY01_MYCLE (Q49736) (792 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 792 aa overlap. Contains a probable helix-turn-helix motif at aa 515-536 (Score 1032%2C SD +2.70);gbkey=CDS;gene=ML0392;product=putative sugar phosphorylase;protein_id=CAC29900.1;transl_table=11
AL450380.1	EMBL	gene	488655	489440	.	-	.	ID=gene-ML0393;Name=ML0393;gbkey=Gene;gene=ML0393;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	488655	489440	.	-	0	ID=cds-CAC29901.1;Parent=gene-ML0393;Dbxref=InterPro:IPR010976,InterPro:IPR023198,InterPro:IPR023214,NCBI_GP:CAC29901.1;Name=CAC29901.1;Note=Similar to M. tuberculosis Rv3400%2C hypothetical protein%2C SW:YY00_MYCTU (Q50725) (262 aa)%3B Fasta score E(): 0%2C 74.4%25 identity in 262 aa overlap. Previously sequenced as SW:YY00_MYCLE (Q49741) (261 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 261 aa overlap. Contains Pfam match to entry PF00702 Hydrolase%2C haloacid dehalogenase-like hydrolase.;gbkey=CDS;gene=ML0393;product=putative hydrolase;protein_id=CAC29901.1;transl_table=11
AL450380.1	EMBL	sequence_feature	488733	489377	.	-	.	ID=id-ML0393;Note=Pfam match to entry PF00702 Hydrolase%2C haloacid dehalogenase-like hydrolase%2C score 145.80%2C E-value 7.9e-40;gbkey=misc_feature;gene=ML0393
AL450380.1	EMBL	gene	489915	490427	.	-	.	ID=gene-ML0394;Name=ML0394;gbkey=Gene;gene=ML0394;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	489915	490427	.	-	0	ID=cds-CAC29902.1;Parent=gene-ML0394;Dbxref=GOA:Q9CCV0,InterPro:IPR013216,InterPro:IPR029063,UniProtKB/TrEMBL:Q9CCV0,NCBI_GP:CAC29902.1;Name=CAC29902.1;Note=Unknown function. Possible CDS suggested by GC frameplot and codon usage plots.;gbkey=CDS;gene=ML0394;product=hypothetical protein;protein_id=CAC29902.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	490440	490445	.	-	.	ID=id-AL450380.1:490440..490445;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	491043	492632	.	+	.	ID=gene-guaA;Name=guaA;gbkey=Gene;gene=guaA;gene_biotype=protein_coding;gene_synonym=ML0395
AL450380.1	EMBL	CDS	491043	492632	.	+	0	ID=cds-CAC29903.1;Parent=gene-guaA;Dbxref=GOA:P46810,InterPro:IPR001674,InterPro:IPR004739,InterPro:IPR014729,InterPro:IPR017926,InterPro:IPR022310,InterPro:IPR022955,InterPro:IPR025777,InterPro:IPR029062,NCBI_GP:CAC29903.1;Name=CAC29903.1;Note=Similar to M. tuberculosis guaA%2C Rv3396c%2C putative GMP synthase%2C SW:GUAA_MYCTU (Q50729) (525 aa)%3B Fasta score E(): 0%2C 86.9%25 identity in 525 aa overlap. Similar to many e.g. Bacillus subtilis guaA%2C GMP synthase [glutamine-hydrolyzing]%2C SW:GUAA_BACSU (P29727) (513 aa)%3B Fasta score E(): 0%2C 50.7%25 identity in 515 aa overlap. Previously sequenced as SW:GUAA_MYCLE (P46810) (590 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 529 aa overlap. Contains Pfam match to entry PF00958 GMP_synt_C%2C GMP synthase C terminal domain. Contains Pfam match to entry PF00117 GATase%2C Glutamine amidotransferase class-I. Contains PS00442 Glutamine amidotransferases class-I active site.;gbkey=CDS;gene=guaA;product=putative GMP synthase;protein_id=CAC29903.1;transl_table=11
AL450380.1	EMBL	sequence_feature	491094	491639	.	+	.	ID=id-guaA;Note=Pfam match to entry PF00117 GATase%2C Glutamine amidotransferase class-I%2C score 195.90%2C E-value 6.5e-55;gbkey=misc_feature;gene=guaA
AL450380.1	EMBL	sequence_feature	491304	491339	.	+	.	ID=id-guaA-2;Note=PS00442 Glutamine amidotransferases class-I active site;gbkey=misc_feature;gene=guaA
AL450380.1	EMBL	sequence_feature	492318	492629	.	+	.	ID=id-guaA-3;Note=Pfam match to entry PF00958 GMP_synt_C%2C GMP synthase C terminal domain%2C score 209.80%2C E-value 4.1e-59;gbkey=misc_feature;gene=guaA
AL450380.1	EMBL	repeat_region	492656	493841	.	-	.	ID=id-AL450380.1:492656..493841;Note=1186 bp repeat%2C 100%25 identical to region 3241403..3242588;gbkey=repeat_region
AL450380.1	EMBL	gene	492714	493823	.	-	.	ID=gene-ML0396;Name=ML0396;gbkey=Gene;gene=ML0396;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	492714	493823	.	-	0	ID=cds-CAC29904.1;Parent=gene-ML0396;Dbxref=GOA:Q57240,InterPro:IPR002587,InterPro:IPR013021,InterPro:IPR016040,InterPro:IPR017815,NCBI_GP:CAC29904.1;Name=CAC29904.1;Note=Similar to M. tuberculosis Rv0046c%2C conserved hypothetical protein%2C TR:P71703 (EMBL:AL123456) (367 aa)%3B Fasta score E(): 0%2C 91.8%25 identity in 366 aa overlap. Similar to other bacterial hypothetical proteins. C-terminal half show weak similarity to eukaryotic myo-inositol-1-phosphate synthases e.g. Candida albicans ino1%2C myo-inositol-1-phosphate synthase%2C SW:INO1_CANAL (P42800) (520 aa)%3B Fasta score E(): 0.22%2C 24.4%25 identity in 242 aa overlap. Previously sequenced as TR:Q57240 (EMBL:U00015) (369 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 369 aa overlap. Contains Pfam match to entry PF01658 Inos-1-P_synth%2C Myo-inositol-1-phosphate synthase.%3B~Identical in sequence to ML2692;gbkey=CDS;gene=ML0396;product=conserved hypothetical protein;protein_id=CAC29904.1;transl_table=11
AL450380.1	EMBL	sequence_feature	492723	493781	.	-	.	ID=id-ML0396;Note=Pfam match to entry PF01658 Inos-1-P_synth%2C Myo-inositol-1-phosphate synthase%2C score 558.20%2C E-value 5.3e-164;gbkey=misc_feature;gene=ML0396
AL450380.1	EMBL	gene	493939	495747	.	-	.	ID=gene-ML0397;Name=ML0397;gbkey=Gene;gene=ML0397;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	493939	495747	.	-	0	ID=cds-CAC29905.1;Parent=gene-ML0397;Dbxref=GOA:Q9CCU8,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR001851,InterPro:IPR029787,UniProtKB/TrEMBL:Q9CCU8,NCBI_GP:CAC29905.1;Name=CAC29905.1;Note=C-terminal half is similar to sugar permeases e.g. Escherichia coli AraH%2C L-arabinose transport system permease protein%2C SW:ARAH_ECOLI (P08532) (329 aa)%3B Fasta score E(): 1.1e-26%2C 36.0%25 identity in 297 aa overlap. The N-terminal half shows weak similarity to other proteins containing PAS and DUF9 domains. There is a possiblity that this is a signal transduction protein. Previously sequenced as TR:Q49739 (EMBL:U00015) (577 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 577 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions in the C-terminal half. Contains Pfam match to entry PF00989 PAS%2C PAS domain. Contains Pfam match to entry PF00990 DUF9%2C Domain of unknown function. Contains PS01039 Bacterial extracellular solute-binding proteins%2C family 3 signature.%3B~The C-terminal half is similar to ML1419. The N-terminal half shows some similarity to ML1750;gbkey=CDS;gene=ML0397;product=putative transporter protein;protein_id=CAC29905.1;transl_table=11
AL450380.1	EMBL	sequence_feature	494128	494169	.	-	.	ID=id-ML0397;Note=PS01039 Bacterial extracellular solute-binding proteins%2C family 3 signature;gbkey=misc_feature;gene=ML0397
AL450380.1	EMBL	sequence_feature	494854	495348	.	-	.	ID=id-ML0397-2;Note=Pfam match to entry PF00990 DUF9%2C Domain of unknown function%2C score 238.20%2C E-value 1.1e-67;gbkey=misc_feature;gene=ML0397
AL450380.1	EMBL	sequence_feature	495592	495717	.	-	.	ID=id-ML0397-3;Note=Pfam match to entry PF00989 PAS%2C PAS domain%2C score 32.10%2C E-value 2.8e-07;gbkey=misc_feature;gene=ML0397
AL450380.1	EMBL	gene	496060	497097	.	-	.	ID=gene-ML0398;Name=ML0398;gbkey=Gene;gene=ML0398;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	496060	497097	.	-	0	ID=cds-CAC29906.1;Parent=gene-ML0398;Dbxref=InterPro:IPR025997,InterPro:IPR028082,UniProtKB/TrEMBL:Q49738,NCBI_GP:CAC29906.1;Name=CAC29906.1;Note=Similar to many D-ribose-binding proteins e.g. Bacillus subtilis rbsB%2C D-ribose-binding protein precursor%2C SW:RBSB_BACSU (P36949) (305 aa)%3B Fasta score E(): 2e-16%2C 32.6%25 identity in 273 aa overlap. Previously sequenced as TR:Q49738 (EMBL:U00015) (345 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 345 aa overlap. Contains probable N-terminal signal sequence. Contains Pfam match to entry PF00532 Peripla_BP_like%2C Periplasmic binding proteins and sugar binding domain of the LacI family..;gbkey=CDS;gene=ML0398;product=putative D-ribose-binding protein;protein_id=CAC29906.1;transl_table=11
AL450380.1	EMBL	sequence_feature	496240	496995	.	-	.	ID=id-ML0398;Note=Pfam match to entry PF00532 Peripla_BP_like%2C Periplasmic binding proteins and sugar binding domain of the LacI family.%2C score 23.60%2C E-value 3.4e-07;gbkey=misc_feature;gene=ML0398
AL450380.1	EMBL	ribosome_entry_site	497104	497109	.	-	.	ID=id-AL450380.1:497104..497109;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	497357	498001	.	+	.	ID=gene-ML0399;Name=ML0399;gbkey=Gene;gene=ML0399;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	497357	498001	.	+	0	ID=cds-ML0399;Parent=gene-ML0399;Note=Possible pseudogene of M. tuberculosis orthologue Rv3395c (Best blastx score 208);gbkey=CDS;gene=ML0399;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	498082	499157	.	+	.	ID=gene-ML0400;Name=ML0400;gbkey=Gene;gene=ML0400;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	498082	499157	.	+	0	ID=cds-ML0400;Parent=gene-ML0400;Note=Possible pseudogene of M. tuberculosis orthologue Rv3394c (Best blastx score 268);gbkey=CDS;gene=ML0400;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	499303	499755	.	-	.	ID=gene-ML0401;Name=ML0401;gbkey=Gene;gene=ML0401;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	499303	499755	.	-	0	ID=cds-ML0401;Parent=gene-ML0401;Note=Possible pseudogene similar to M. tuberculosis paralogue phoY2 (Best blastx score 152);gbkey=CDS;gene=ML0401;product=phosphate transport system regulator (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	499941	500372	.	-	.	ID=gene-ML0402;Name=ML0402;gbkey=Gene;gene=ML0402;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	499941	500372	.	-	0	ID=cds-ML0402;Parent=gene-ML0402;Note=Possible pseudogene similar to M. tuberculosis paralogue Rv1758 (Best blastx score 151);gbkey=CDS;gene=ML0402;product=putative cutinase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	500826	501747	.	-	.	ID=gene-iunH;Name=iunH;gbkey=Gene;gene=iunH;gene_biotype=pseudogene;gene_synonym=ML0403;pseudo=true
AL450380.1	EMBL	CDS	500826	501747	.	-	0	ID=cds-iunH;Parent=gene-iunH;Note=Possible pseudogene of M. tuberculosis orthologue iunH (Best blastx score 213);gbkey=CDS;gene=iunH;product=probable inosine-uridine preferring nucleoside (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	501850	502403	.	+	.	ID=gene-cmaA1;Name=cmaA1;gbkey=Gene;gene=cmaA1;gene_biotype=pseudogene;gene_synonym=ML0404;pseudo=true
AL450380.1	EMBL	CDS	501850	502403	.	+	0	ID=cds-cmaA1;Parent=gene-cmaA1;Note=Possible pseudogene of M. tuberculosis orthologue cmaA1 (Best blastx score 278);gbkey=CDS;gene=cmaA1;product=cyclopropanemycolic acid synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	503199	503204	.	+	.	ID=id-AL450380.1:503199..503204;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	503217	504401	.	+	.	ID=gene-ML0405;Name=ML0405;gbkey=Gene;gene=ML0405;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	503217	504401	.	+	0	ID=cds-CAC29913.1;Parent=gene-ML0405;Dbxref=UniProtKB/TrEMBL:Q49722,NCBI_GP:CAC29913.1;Name=CAC29913.1;Note=Similar to M. tuberculosis Rv3616c%2C conserved hypothetical protein%2C TR:O06267 (EMBL:AL123456) (392 aa)%3B Fasta score E(): 0%2C 62.7%25 identity in 394 aa overlap and to Rv3864%2C hypothetical protein%2C TR:P96213 (EMBL:AL123456) (402 aa)%3B Fasta score E(): 2.1e-15%2C 31.0%25 identity in 410 aa overlap. Previously sequenced as TR:Q49722 (EMBL:U00015) (394 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 394 aa overlap.;gbkey=CDS;gene=ML0405;product=conserved hypothetical protein;protein_id=CAC29913.1;transl_table=11
AL450380.1	EMBL	gene	504459	504779	.	+	.	ID=gene-ML0406;Name=ML0406;gbkey=Gene;gene=ML0406;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	504459	504779	.	+	0	ID=cds-CAC29914.1;Parent=gene-ML0406;Dbxref=InterPro:IPR022536,NCBI_GP:CAC29914.1;Name=CAC29914.1;Note=Similar to M. tuberculosis Rv3615c%2C conserved hypothetical protein%2C TR:O06268 (EMBL:AL123456) (103 aa)%3B Fasta score E(): 4.1e-19%2C 60.9%25 identity in 92 aa overlap and to Rv3865%2C hypothetical protein%2C TR:P96212 (EMBL:AL123456) (103 aa)%3B Fasta score E(): 0.00022%2C 31.1%25 identity in 103 aa overlap. Previously sequenced as TR:Q49723 (EMBL:U00015) (106 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 106 aa overlap.;gbkey=CDS;gene=ML0406;product=conserved hypothetical protein;protein_id=CAC29914.1;transl_table=11
AL450380.1	EMBL	gene	504793	505443	.	+	.	ID=gene-ML0407;Name=ML0407;gbkey=Gene;gene=ML0407;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	504793	505443	.	+	0	ID=cds-CAC29915.1;Parent=gene-ML0407;Dbxref=UniProtKB/TrEMBL:Q49730,NCBI_GP:CAC29915.1;Name=CAC29915.1;Note=Similar to M. tuberculosis Rv3614c%2C conserved hypothetical protein%2C TR:O06269 (EMBL:AL123456) (184 aa)%3B Fasta score E(): 0%2C 71.5%25 identity in 186 aa overlap and to Rv3867%2C hypothetical protein%2C TR:O69732 (EMBL:AL123456) (183 aa)%3B Fasta score E(): 2.1e-28%2C 51.4%25 identity in 175 aa overlap. Previously sequenced as TR:Q49730 (EMBL:U00015) (216 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 216 aa overlap.%3B~Similar to ML0056;gbkey=CDS;gene=ML0407;product=conserved hypothetical protein;protein_id=CAC29915.1;transl_table=11
AL450380.1	EMBL	pseudogene	505777	506544	.	+	.	ID=gene-ML0408;Name=ML0408;gbkey=Gene;gene=ML0408;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	505777	506544	.	+	0	ID=cds-ML0408;Parent=gene-ML0408;Note=Possible pseudogene similar to M. tuberculosis IS1081 transposase (Best blastx score 140);gbkey=CDS;gene=ML0408;product=possible IS1081 transposase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	506861	507532	.	-	.	ID=gene-ML0409;Name=ML0409;gbkey=Gene;gene=ML0409;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	506861	507532	.	-	0	ID=cds-ML0409;Parent=gene-ML0409;Note=Possible pseudogene similar to M. tuberculosis IS6110 transposase (Best blastx score 164);gbkey=CDS;gene=ML0409;product=possible IS6110 transposase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	508310	508315	.	+	.	ID=id-AL450380.1:508310..508315;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	508327	508629	.	+	.	ID=gene-ML0410;Name=ML0410;gbkey=Gene;gene=ML0410;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	508327	508629	.	+	0	ID=cds-CAC29918.1;Parent=gene-ML0410;Dbxref=InterPro:IPR000084,UniProtKB/TrEMBL:Q49724,NCBI_GP:CAC29918.1;Name=CAC29918.1;Note=Similar to M. tuberculosis PE-family proteins e.g. Rv2107%2C PE-family protein%2C TR:O33243 (EMBL:AL123456) (98 aa)%3B Fasta score E(): 4.7e-08%2C 44.7%25 identity in 85 aa overlap. Contains Pfam match to entry PF00934 PE%2C PE family.%3B~Similar to ML0538%2C ML1183 and ML1414;gbkey=CDS;gene=ML0410;product=putative PE-family protein;protein_id=CAC29918.1;transl_table=11
AL450380.1	EMBL	sequence_feature	508327	508599	.	+	.	ID=id-ML0410;Note=Pfam match to entry PF00934 PE%2C PE family%2C score 37.90%2C E-value 4.3e-08;gbkey=misc_feature;gene=ML0410
AL450380.1	EMBL	ribosome_entry_site	508740	508745	.	+	.	ID=id-AL450380.1:508740..508745;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	508755	509981	.	+	.	ID=gene-ML0411;Name=ML0411;gbkey=Gene;gene=ML0411;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	508755	509981	.	+	0	ID=cds-CAC29919.1;Parent=gene-ML0411;Dbxref=InterPro:IPR000030,InterPro:IPR022171,NCBI_GP:CAC29919.1;Name=CAC29919.1;Note=Similar to M. tuberculosis PPE-family proteins e.g. Rv2108%2C PPE-family protein%2C TR:P95315 (EMBL:AL123456) (243 aa)%3B Fasta score E(): 5.8e-17%2C 34.4%25 identity in 212 aa overlap. M. leprae serine-rich antigen (25L) (45 kDa protein). Previously sequenced as SW:SRA_MYCLE (Q07297) (408 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 408 aa overlap. Contains Pfam match to entry PF00823 PPE%2C PPE family.%3B~Similar to ML0539%2C ML1182 and ML1991;gbkey=CDS;gene=ML0411;product=serine-rich antigen;protein_id=CAC29919.1;transl_table=11
AL450380.1	EMBL	sequence_feature	508770	509246	.	+	.	ID=id-ML0411;Note=Pfam match to entry PF00823 PPE%2C PPE family%2C score 281.00%2C E-value 1.5e-80;gbkey=misc_feature;gene=ML0411
AL450380.1	EMBL	pseudogene	510369	510981	.	-	.	ID=gene-lpqD;Name=lpqD;gbkey=Gene;gene=lpqD;gene_biotype=pseudogene;gene_synonym=ML0412;pseudo=true
AL450380.1	EMBL	CDS	510369	510981	.	-	0	ID=cds-lpqD;Parent=gene-lpqD;Note=Possible pseudogene of M. tuberculosis orthologue lpqD (Best blastx score 254);gbkey=CDS;gene=lpqD;product=putative lipoprotein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	511130	511983	.	+	.	ID=gene-ML0413;Name=ML0413;gbkey=Gene;gene=ML0413;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	511130	511983	.	+	0	ID=cds-ML0413;Parent=gene-ML0413;Note=Possible pseudogene of M. tuberculosis orthologue Rv3389c (Best blastx score 301);gbkey=CDS;gene=ML0413;product=putative dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	511984	513273	.	-	.	ID=gene-otsB2;Name=otsB2;gbkey=Gene;gene=otsB2;gene_biotype=protein_coding;gene_synonym=ML0414
AL450380.1	EMBL	CDS	511984	513273	.	-	0	ID=cds-CAC29922.1;Parent=gene-otsB2;Dbxref=GOA:Q49734,InterPro:IPR003337,InterPro:IPR006379,InterPro:IPR023214,NCBI_GP:CAC29922.1;Name=CAC29922.1;Note=Similar to M. tuberculosis otsB2%2C trehalose-6-phosphate phosphatase%2C TR:O50401 (EMBL:AL123456) (391 aa)%3B Fasta score E(): 0%2C 67.1%25 identity in 425 aa overlap. Similar%2C except at N-terminus%2C to Arabidopsis thaliana tppB%2C trehalose-6-phosphate phosphatase%2C TR:O64897 (EMBL:AF007779) (374 aa)%3B Fasta score E(): 2.2e-17%2C 31.1%25 identity in 315 aa overlap. Previously sequenced as TR:Q49734 (EMBL:U00015) (429 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 429 aa overlap. Contains PS00402 Binding-protein-dependent transport systems inner membrane comp sign..;gbkey=CDS;gene=otsB2;product=putative trehalose-6-phosphate phosphatase;protein_id=CAC29922.1;transl_table=11
AL450380.1	EMBL	sequence_feature	512485	512571	.	-	.	ID=id-otsB2;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp sign.;gbkey=misc_feature;gene=otsB2
AL450380.1	EMBL	pseudogene	513499	514618	.	-	.	ID=gene-ML0415;Name=ML0415;gbkey=Gene;gene=ML0415;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	513499	514618	.	-	0	ID=cds-ML0415;Parent=gene-ML0415;Note=Possible pseudogene of M. tuberculosis orthologue Rv3371c (Best blastx score 169);gbkey=CDS;gene=ML0415;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	514919	517123	.	+	.	ID=gene-dnaE2;Name=dnaE2;gbkey=Gene;gene=dnaE2;gene_biotype=pseudogene;gene_synonym=ML0416;pseudo=true
AL450380.1	EMBL	CDS	514919	517123	.	+	0	ID=cds-dnaE2;Parent=gene-dnaE2;Note=Possible pseudogene of M. tuberculosis orthologue dnaE2 (Best blastx score 538);gbkey=CDS;gene=dnaE2;product=DNA polymerase III [alpha] chain (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	517299	517583	.	-	.	ID=gene-ML0417;Name=ML0417;gbkey=Gene;gene=ML0417;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	517299	517583	.	-	0	ID=cds-ML0417;Parent=gene-ML0417;Note=Possible pseudogene of M. tuberculosis orthologue Rv3369 (Best blastx score 151);gbkey=CDS;gene=ML0417;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	517644	518276	.	+	.	ID=gene-ML0418;Name=ML0418;gbkey=Gene;gene=ML0418;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	517644	518276	.	+	0	ID=cds-CAC29926.1;Parent=gene-ML0418;Dbxref=GOA:Q7AQJ5,InterPro:IPR000415,InterPro:IPR029479,UniProtKB/TrEMBL:Q7AQJ5,NCBI_GP:CAC29926.1;Name=CAC29926.1;Note=Similar to M. tuberculosis Rv3368c%2C conserved hypothetical protein%2C TR:O50397 (EMBL:AL123456) (214 aa)%3B Fasta score E(): 0%2C 81.9%25 identity in 210 aa overlap. Shows weak similarity Thermus aquaticus nox%2C NADH dehydrogenase%2C SW:NOX_THETH (X60110) (205 aa)%3B Fasta score E(): 0.00023%2C 28.8%25 identity in 212 aa overlap. Previously sequenced as TR:O07697 (EMBL:Z97179) (210 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 210 aa overlap. Contains Pfam match to entry PF00881 Nitroreductase%2C Nitroreductase family. Contains PS00402 Binding-protein-dependent transport systems inner membrane comp sign..;gbkey=CDS;gene=ML0418;product=putative oxidoreductase;protein_id=CAC29926.1;transl_table=11
AL450380.1	EMBL	sequence_feature	517680	518150	.	+	.	ID=id-ML0418;Note=Pfam match to entry PF00881 Nitroreductase%2C Nitroreductase family%2C score 146.20%2C E-value 5.9e-40;gbkey=misc_feature;gene=ML0418
AL450380.1	EMBL	sequence_feature	518109	518195	.	+	.	ID=id-ML0418-2;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp sign.;gbkey=misc_feature;gene=ML0418
AL450380.1	EMBL	gene	518414	518890	.	-	.	ID=gene-ML0419;Name=ML0419;gbkey=Gene;gene=ML0419;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	518414	518890	.	-	0	ID=cds-CAC29927.1;Parent=gene-ML0419;Dbxref=GOA:Q9CCU7,InterPro:IPR001537,InterPro:IPR016914,InterPro:IPR029026,InterPro:IPR029028,UniProtKB/TrEMBL:Q9CCU7,NCBI_GP:CAC29927.1;Name=CAC29927.1;Note=Similar to M. tuberculosis spoU%2C Rv3366%2C possible RNA methyltransferase%2C TR:O50394 (EMBL:AL123456) (154 aa)%3B Fasta score E(): 0%2C 83.8%25 identity in 154 aa overlap. Shows weak similarity to Escherichia coli spoU%2C tRNA (guanosine-2'-o-)-methyltransferase%2C SW:TRMH_ECOLI (P19396) (229 aa)%3B Fasta score E(): 4e-05%2C 30.4%25 identity in 148 aa overlap. Similar to many hypothetical RNA methyltranferases. Previously sequenced as TR:O07698 (EMBL:Z97179) (169 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 158 aa overlap. Contains Pfam match to entry PF00588 SpoU_methylase%2C SpoU rRNA Methylase family.;gbkey=CDS;gene=ML0419;product=putative tRNA/rRNA methyltransferase;protein_id=CAC29927.1;transl_table=11
AL450380.1	EMBL	sequence_feature	518453	518878	.	-	.	ID=id-ML0419;Note=Pfam match to entry PF00588 SpoU_methylase%2C SpoU rRNA Methylase family%2C score 120.50%2C E-value 3.1e-32;gbkey=misc_feature;gene=ML0419
AL450380.1	EMBL	pseudogene	519275	521679	.	+	.	ID=gene-ML0420;Name=ML0420;gbkey=Gene;gene=ML0420;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	519275	521679	.	+	0	ID=cds-ML0420;Parent=gene-ML0420;Note=Possible pseudogene of M. tuberculosis orthologue Rv3365c (Best blastx score 540);gbkey=CDS;gene=ML0420;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	521734	522126	.	+	.	ID=gene-ML0421;Name=ML0421;gbkey=Gene;gene=ML0421;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	521734	522126	.	+	0	ID=cds-ML0421;Parent=gene-ML0421;Note=Possible pseudogene of M. tuberculosis orthologue Rv3364c (Best blastx score 181);gbkey=CDS;gene=ML0421;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	522247	522813	.	+	.	ID=gene-ML0422;Name=ML0422;gbkey=Gene;gene=ML0422;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	522247	522813	.	+	0	ID=cds-ML0422;Parent=gene-ML0422;Note=Possible pseudogene of M. tuberculosis orthologue Rv3362c (Best blastx score 425);gbkey=CDS;gene=ML0422;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	522864	523111	.	+	.	ID=gene-ML0423;Name=ML0423;gbkey=Gene;gene=ML0423;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	522864	523111	.	+	0	ID=cds-ML0423;Parent=gene-ML0423;Note=Possible pseudogene of M. tuberculosis orthologue Rv3361c (Best blastx score 162);gbkey=CDS;gene=ML0423;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	523180	523810	.	+	.	ID=id-AL450380.1:523180..523810;Note=Dispersed repeat%2C RLEP%2C copy 7;gbkey=repeat_region
AL450380.1	EMBL	gene	523803	524288	.	-	.	ID=gene-bcp;Name=bcp;gbkey=Gene;gene=bcp;gene_biotype=protein_coding;gene_synonym=ML0424
AL450380.1	EMBL	CDS	523803	524288	.	-	0	ID=cds-CAC29932.1;Parent=gene-bcp;Dbxref=GOA:Q7AQJ4,InterPro:IPR000866,InterPro:IPR012336,UniProtKB/TrEMBL:Q7AQJ4,NCBI_GP:CAC29932.1;Name=CAC29932.1;Note=Similar to M. tuberculosis bcp%2C Rv2521%2C bacterioferritin comigratory protein%2C TR:O5322 (EMBL:AL123456) (157 aa)%3B Fasta score E(): 0%2C 79.6%25 identity in 157 aa overlap. Similar to many members of the AhpC/TSA family%2C suggesting a protective%2C antioxidant role. e.g. shows similarity to Sedum lineare prxQ%2C peroxiredoxin Q%2C TR:BAA90524 (EMBL:AB037598) (186 aa)%3B Fasta score E(): 3e-17%2C 40.0%25 identity in 155 aa overlap and weak similarity to Mus musculus tdpX1%2C thioredoxin peroxidase 1%2C SW:TDX1_MOUSE (Q61171) (343 aa)%3B BlastP Expect 8.8. Previously sequenced as TR:O07705 (EMBL:Z97179) (161 aa)%3B Fasta score E(): 0%2C 99.4%25 identity in 161 aa overlap. Contains Pfam match to entry PF00578 AhpC-TSA%2C AhpC/TSA family.;gbkey=CDS;gene=bcp;product=putative antioxidant protein;protein_id=CAC29932.1;transl_table=11
AL450380.1	EMBL	sequence_feature	523827	524264	.	-	.	ID=id-bcp;Note=Pfam match to entry PF00578 AhpC-TSA%2C AhpC/TSA family%2C score 117.20%2C E-value 3.1e-31;gbkey=misc_feature;gene=bcp
AL450380.1	EMBL	ribosome_entry_site	524293	524297	.	-	.	ID=id-AL450380.1:524293..524297;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	ribosome_entry_site	524403	524407	.	+	.	ID=id-AL450380.1:524403..524407;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	524416	524643	.	+	.	ID=gene-ML0425;Name=ML0425;gbkey=Gene;gene=ML0425;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	524416	524643	.	+	0	ID=cds-CAC29933.1;Parent=gene-ML0425;Dbxref=InterPro:IPR022062,UniProtKB/TrEMBL:Q9CCU6,NCBI_GP:CAC29933.1;Name=CAC29933.1;Note=Similar to M. tuberculosis Rv2520c%2C hypothetical protein%2C TR:O53225 (EMBL:AL123456) (75 aa)%3B Fasta score E(): 2.2e-15%2C 57.3%25 identity in 75 aa overlap. Previously sequenced as TR:O07706 (EMBL:Z97179) (91 aa)%3B Fasta score E(): 7.9e-29%2C 100.0%25 identity in 75 aa overlap. Contains hydrophobic%2C possible membrane-spanning region.;gbkey=CDS;gene=ML0425;product=putative membrane protein;protein_id=CAC29933.1;transl_table=11
AL450380.1	EMBL	gene	524675	524750	.	-	.	ID=gene-lysU;Name=lysU;gbkey=Gene;gene=lysU;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	524675	524750	.	-	.	ID=rna-lysU;Parent=gene-lysU;Note=tRNA Lys anticodon CTT%2C Cove score 84.12;gbkey=tRNA;gene=lysU;product=tRNA-Lys
AL450380.1	EMBL	exon	524675	524750	.	-	.	ID=exon-lysU-1;Parent=rna-lysU;Note=tRNA Lys anticodon CTT%2C Cove score 84.12;gbkey=tRNA;gene=lysU;product=tRNA-Lys
AL450380.1	EMBL	gene	524929	526143	.	+	.	ID=gene-lppS;Name=lppS;gbkey=Gene;gene=lppS;gene_biotype=protein_coding;gene_synonym=ML0426
AL450380.1	EMBL	CDS	524929	526143	.	+	0	ID=cds-CAC29934.1;Parent=gene-lppS;Dbxref=GOA:Q9CCU5,InterPro:IPR005490,UniProtKB/TrEMBL:Q9CCU5,NCBI_GP:CAC29934.1;Name=CAC29934.1;Note=Similar to M. tuberculosis lppS%2C Rv2518c%2C putative lipoprotein%2C TR:O53223 (EMBL:AL021185) (408 aa)%3B Fasta score E(): 0%2C 82.6%25 identity in 403 aa overlap. Does not contain a predicted membrane lipoprotein lipid attachment site (present in lppS)%2C but does contain a possible N-terminal signal sequence. Similar to many predicted lipoproteins from Streptomyces coelicolor. Previously sequenced as TR:O07707 (EMBL:Z97179) (407 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 404 aa overlap.%3B~Similar to ML0569%2C ML2446 and ML2664;gbkey=CDS;gene=lppS;product=putative secreted protein;protein_id=CAC29934.1;transl_table=11
AL450380.1	EMBL	gene	526168	526243	.	-	.	ID=gene-hisT;Name=hisT;gbkey=Gene;gene=hisT;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	526168	526243	.	-	.	ID=rna-hisT;Parent=gene-hisT;Note=tRNA His anticodon GTG%2C Cove score 82.48;gbkey=tRNA;gene=hisT;product=tRNA-His
AL450380.1	EMBL	exon	526168	526243	.	-	.	ID=exon-hisT-1;Parent=rna-hisT;Note=tRNA His anticodon GTG%2C Cove score 82.48;gbkey=tRNA;gene=hisT;product=tRNA-His
AL450380.1	EMBL	gene	526294	526941	.	-	.	ID=gene-ML0427;Name=ML0427;gbkey=Gene;gene=ML0427;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	526294	526941	.	-	0	ID=cds-CAC29935.1;Parent=gene-ML0427;Dbxref=GOA:O07708,InterPro:IPR006055,InterPro:IPR012337,InterPro:IPR013520,InterPro:IPR022894,NCBI_GP:CAC29935.1;Name=CAC29935.1;Note=EC_number%3D3.1.-.-%3B~Similar to M. tuberculosis orn%2C Rv2511%2C putative oligoribonuclease%2C SW:ORN_MYCTU (O06174) (215 aa)%3B Fasta score E(): 0%2C 84.5%25 identity in 213 aa overlap. Similar to many e..g Escherichia coli orn%2C oligoribonuclease%2C SW:ORN_ECOLI (P39287) (180 aa)%3B Fasta score E(): 8.2e-25%2C 45.3%25 identity in 172 aa overlap. Previously sequenced as SW:ORN_MYCLE (O07708) (215 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 215 aa overlap.;gbkey=CDS;gene=ML0427;product=putative oligoribonuclease;protein_id=CAC29935.1;transl_table=11
AL450380.1	EMBL	pseudogene	527082	528557	.	+	.	ID=gene-ML0428;Name=ML0428;gbkey=Gene;gene=ML0428;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	527082	528557	.	+	0	ID=cds-ML0428;Parent=gene-ML0428;Note=Possible pseudogene of M. tuberculosis orthologue Rv2510c (Best blastx score 399);gbkey=CDS;gene=ML0428;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	528621	529427	.	-	.	ID=gene-ML0429;Name=ML0429;gbkey=Gene;gene=ML0429;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	528621	529427	.	-	0	ID=cds-CAC29937.1;Parent=gene-ML0429;Dbxref=GOA:Q7AQJ3,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:Q7AQJ3,NCBI_GP:CAC29937.1;Name=CAC29937.1;Note=Similar to M. tuberculosis Rv2509%2C putative oxidoreductase%2C TR:O06172 (EMBL:AL123456) (268 aa)%3B Fasta score E(): 0%2C 88.8%25 identity in 267 aa overlap. Similar to many putative dehydrogenases. Previously sequenced as TR:O07709 (EMBL:Z97179) (268 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 268 aa overlap. Contains Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase. Contains PS00061 Short-chain dehydrogenases/reductases family signature.;gbkey=CDS;gene=ML0429;product=putative oxidoreductase;protein_id=CAC29937.1;transl_table=11
AL450380.1	EMBL	sequence_feature	528849	529400	.	-	.	ID=id-ML0429;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 103.40%2C E-value 4.3e-27;gbkey=misc_feature;gene=ML0429
AL450380.1	EMBL	sequence_feature	528912	528998	.	-	.	ID=id-ML0429-2;Note=PS00061 Short-chain dehydrogenases/reductases family signature;gbkey=misc_feature;gene=ML0429
AL450380.1	EMBL	gene	529520	530884	.	+	.	ID=gene-ML0430;Name=ML0430;gbkey=Gene;gene=ML0430;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	529520	530884	.	+	0	ID=cds-CAC29938.1;Parent=gene-ML0430;Dbxref=InterPro:IPR016196,InterPro:IPR024671,UniProtKB/TrEMBL:Q9CCU4,NCBI_GP:CAC29938.1;Name=CAC29938.1;Note=Similar to M. tuberculosis Rv2508c%2C putative membrane protein%2C TR:O06171 (EMBL:AL123456) (445 aa)%3B Fasta score E(): 0%2C 75.7%25 identity in 441 aa overlap. Also similar to Streptomyces coelicolor SC6D7.19C%2C putative integral membrane protein%2C TR:Q9RKX9 (EMBL:AL133213) (486 aa)%3B Fasta score E(): 1.5e-13%2C 29.7%25 identity in 445 aa overlap. Previously sequenced as TR:O07710 (EMBL:Z97179) (464 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 454 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0430;product=putative membrane protein;protein_id=CAC29938.1;transl_table=11
AL450380.1	EMBL	gene	530916	531695	.	-	.	ID=gene-ML0431;Name=ML0431;gbkey=Gene;gene=ML0431;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	530916	531695	.	-	0	ID=cds-CAC29939.1;Parent=gene-ML0431;Dbxref=InterPro:IPR008693,UniProtKB/TrEMBL:Q9CCU3,NCBI_GP:CAC29939.1;Name=CAC29939.1;Note=Similar to M. tuberculosis Rv2507%2C putative membrane protein%2C TR:O06170 (EMBL:AL123456) (273 aa)%3B Fasta score E(): 0%2C 60.4%25 identity in 275 aa overlap. Previously sequenced as TR:O07711 (EMBL:Z97179) (261 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 259 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0431;product=putative membrane protein;protein_id=CAC29939.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	531699	531704	.	-	.	ID=id-AL450380.1:531699..531704;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	531814	532464	.	-	.	ID=gene-ML0432;Name=ML0432;gbkey=Gene;gene=ML0432;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	531814	532464	.	-	0	ID=cds-ML0432;Parent=gene-ML0432;Note=Possible pseudogene of M. tuberculosis orthologue Rv2506 (Best blastx score 173);gbkey=CDS;gene=ML0432;product=transcriptional regulator (TetR/AcrR family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	532614	533912	.	+	.	ID=gene-fadD35;Name=fadD35;gbkey=Gene;gene=fadD35;gene_biotype=pseudogene;gene_synonym=ML0433;pseudo=true
AL450380.1	EMBL	CDS	532614	533912	.	+	0	ID=cds-fadD35;Parent=gene-fadD35;Note=Possible pseudogene of M. tuberculosis orthologue fadD35 (Best blastx score 403);gbkey=CDS;gene=fadD35;product=acyl-CoA synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	534033	534710	.	+	.	ID=gene-scoA;Name=scoA;gbkey=Gene;gene=scoA;gene_biotype=pseudogene;gene_synonym=ML0434;pseudo=true
AL450380.1	EMBL	CDS	534033	534710	.	+	0	ID=cds-scoA;Parent=gene-scoA;Note=Possible pseudogene of M. tuberculosis orthologue scoA (Best blastx score 439);gbkey=CDS;gene=scoA;product=3-oxo acid:CoA transferase%2C [alpha] subunit (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	534769	535414	.	+	.	ID=gene-scoB;Name=scoB;gbkey=Gene;gene=scoB;gene_biotype=pseudogene;gene_synonym=ML0435;pseudo=true
AL450380.1	EMBL	CDS	534769	535414	.	+	0	ID=cds-scoB;Parent=gene-scoB;Note=Possible pseudogene of M. tuberculosis orthologue scoB (Best blastx score 465);gbkey=CDS;gene=scoB;product=3-oxo acid:CoA transferase%2C [beta] subunit (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	535414	537000	.	+	.	ID=gene-accD1;Name=accD1;gbkey=Gene;gene=accD1;gene_biotype=pseudogene;gene_synonym=ML0436;pseudo=true
AL450380.1	EMBL	CDS	535414	537000	.	+	0	ID=cds-accD1;Parent=gene-accD1;Note=Possible pseudogene of M. tuberculosis orthologue accD1 (Best blastx score 396);gbkey=CDS;gene=accD1;product=acetyl/propionyl-CoA carboxylase%2C [beta] subunit (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	537009	538544	.	+	.	ID=gene-accA1;Name=accA1;gbkey=Gene;gene=accA1;gene_biotype=pseudogene;gene_synonym=ML0437;pseudo=true
AL450380.1	EMBL	CDS	537009	538544	.	+	0	ID=cds-accA1;Parent=gene-accA1;Note=Possible pseudogene of M. tuberculosis orthologue accA1 (Best blastx score 865);gbkey=CDS;gene=accA1;product=acetyl/propionyl-CoA carboxylase%2C [alpha] subunit (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	538598	539715	.	+	.	ID=gene-fadE19;Name=fadE19;gbkey=Gene;gene=fadE19;gene_biotype=pseudogene;gene_synonym=ML0438;pseudo=true
AL450380.1	EMBL	CDS	538598	539715	.	+	0	ID=cds-fadE19;Parent=gene-fadE19;Note=Possible pseudogene of M. tuberculosis orthologue fadE19 (Best blastx score 346);gbkey=CDS;gene=fadE19;product=acyl-CoA dehydrogenase (aka mmgC) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	539670	540204	.	+	.	ID=gene-ML0439;Name=ML0439;gbkey=Gene;gene=ML0439;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	539670	540204	.	+	0	ID=cds-ML0439;Parent=gene-ML0439;Note=Possible pseudogene of M. tuberculosis orthologue Rv2499c (Best blastx score 164);gbkey=CDS;gene=ML0439;product=putative aldehyde dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	540204	540782	.	+	.	ID=gene-citE;Name=citE;gbkey=Gene;gene=citE;gene_biotype=pseudogene;gene_synonym=ML0440;pseudo=true
AL450380.1	EMBL	CDS	540204	540782	.	+	0	ID=cds-citE;Parent=gene-citE;Note=Possible pseudogene of M. tuberculosis orthologue citE (Best blastx score 389);gbkey=CDS;gene=citE;product=citrate lyase [beta] chain (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	540802	541460	.	+	.	ID=gene-pdhA;Name=pdhA;gbkey=Gene;gene=pdhA;gene_biotype=pseudogene;gene_synonym=ML0441;pseudo=true
AL450380.1	EMBL	CDS	540802	541460	.	+	0	ID=cds-pdhA;Parent=gene-pdhA;Note=Possible pseudogene of M. tuberculosis orthologue pdhA (Best blastx score 325);gbkey=CDS;gene=pdhA;product=pyruvate dehydrogenase E1 component [alpha] subunit (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	541506	542532	.	+	.	ID=gene-pdhB;Name=pdhB;gbkey=Gene;gene=pdhB;gene_biotype=pseudogene;gene_synonym=ML0442;pseudo=true
AL450380.1	EMBL	CDS	541506	542532	.	+	0	ID=cds-pdhB;Parent=gene-pdhB;Note=Possible pseudogene of M. tuberculosis orthologue pdhB (Best blastx score 387);gbkey=CDS;gene=pdhB;product=pyruvate dehydrogenase E1 component [beta] subunit (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	542561	543749	.	+	.	ID=gene-pdhC;Name=pdhC;gbkey=Gene;gene=pdhC;gene_biotype=pseudogene;gene_synonym=ML0443;pseudo=true
AL450380.1	EMBL	CDS	542561	543749	.	+	0	ID=cds-pdhC;Parent=gene-pdhC;Note=Possible pseudogene of M. tuberculosis orthologue pdhC (Best blastx score 324);gbkey=CDS;gene=pdhC;product=dihydrolipoamide acetyltransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	544151	545199	.	-	.	ID=gene-ML0444;Name=ML0444;gbkey=Gene;gene=ML0444;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	544151	545199	.	-	0	ID=cds-ML0444;Parent=gene-ML0444;Note=Possible pseudogene similar to M. tuberculosis paralogue Rv0071 (Best blastx score 239);gbkey=CDS;gene=ML0444;product=group II intron maturase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	544404	545582	.	-	.	ID=id-AL450380.1:544404..545582;Note=1179 bp 100%25 identical to region 2003855..2005033;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	546027	546564	.	-	.	ID=gene-ML0445;Name=ML0445;gbkey=Gene;gene=ML0445;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	546027	546564	.	-	0	ID=cds-ML0445;Parent=gene-ML0445;Note=Possible pseudogene of M. tuberculosis REP-family protein (Best blastx score 218);gbkey=CDS;gene=ML0445;product=REP-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	546688	547132	.	-	.	ID=gene-ML0446;Name=ML0446;gbkey=Gene;gene=ML0446;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	546688	547132	.	-	0	ID=cds-ML0446;Parent=gene-ML0446;Note=Possible pseudogene similar to M. tuberculosis paralogue echA14 (Best blastx score 194);gbkey=CDS;gene=ML0446;product=enoyl-CoA hydratase/isomerase superfamily (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	547228	547967	.	-	.	ID=id-AL450380.1:547228..547967;Note=740 bp 100%25 identical to region 2562936..2563675;gbkey=repeat_region
AL450380.1	EMBL	gene	547312	547788	.	+	.	ID=gene-ML0447;Name=ML0447;gbkey=Gene;gene=ML0447;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	547312	547788	.	+	0	ID=cds-CAC29955.1;Parent=gene-ML0447;Dbxref=GOA:Q9CCU2,InterPro:IPR001128,UniProtKB/TrEMBL:Q9CCU2,NCBI_GP:CAC29955.1;Name=CAC29955.1;Note=Similar to region of cytochrome P450s e.g. Bacillus megaterium CYP102A1%2C cytochrome P450(BM-3)%2C SW:CPXB_BACME (P14779) (1048 aa)%3B Fasta score E(): 0.00033%2C 31.8%25 identity in 132 aa overlap. previously sequenced as TR:O07142 (EMBL:Z96801) (126 aa)%3B Fasta score E(): 0%2C 99.2%25 identity in 126 aa overlap.;gbkey=CDS;gene=ML0447;product=hypothetical protein;protein_id=CAC29955.1;transl_table=11
AL450380.1	EMBL	gene	547992	548264	.	+	.	ID=gene-ML0448;Name=ML0448;gbkey=Gene;gene=ML0448;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	547992	548264	.	+	0	ID=cds-CAC29956.1;Parent=gene-ML0448;Dbxref=UniProtKB/TrEMBL:Q7AQJ2,NCBI_GP:CAC29956.1;Name=CAC29956.1;Note=Unknown function. Previously sequenced as TR:O07143 (EMBL:Z96801) (90 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 90 aa overlap.;gbkey=CDS;gene=ML0448;product=hypothetical protein;protein_id=CAC29956.1;transl_table=11
AL450380.1	EMBL	pseudogene	549366	550149	.	-	.	ID=gene-tesB2;Name=tesB2;gbkey=Gene;gene=tesB2;gene_biotype=pseudogene;gene_synonym=ML0449;pseudo=true
AL450380.1	EMBL	CDS	549366	550149	.	-	0	ID=cds-tesB2;Parent=gene-tesB2;Note=Possible pseudogene of M. tuberculosis orthologue tesB2 (Best blastx score 159);gbkey=CDS;gene=tesB2;product=thioesterase II (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	550193	551116	.	-	.	ID=gene-ML0450;Name=ML0450;gbkey=Gene;gene=ML0450;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	550193	551116	.	-	0	ID=cds-CAC29958.1;Parent=gene-ML0450;Dbxref=GOA:O07145,InterPro:IPR001852,InterPro:IPR011060,InterPro:IPR013785,NCBI_GP:CAC29958.1;Name=CAC29958.1;Note=Similar to M. tuberculosis Rv2606c%2C hypothetical protein%2C SW:YQ06_MYCTU (O06208) (299 aa)%3B Fasta score E(): 0%2C 89.7%25 identity in 291 aa overlap. Highly conserved in both bacteria and eukaryotes. Similar to Emericella nidulans pyroA%2C pyridoxine biosynthesis protein%2C TR:Q9UW83 (EMBL:AF133101) (304 aa)%3B Fasta score E(): 0%2C 65.9%25 identity in 299 aa overlap. Previously sequenced as SW:YQ06_MYCLE (O07145) (333 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 307 aa overlap. Contains Pfam match to entry PF01680 UPF0019%2C Uncharacterized protein family SNZ. Contains PS01235 Uncharacterized protein family UPF0019 signature.;gbkey=CDS;gene=ML0450;product=putative pyridoxine biosynthesis protein;protein_id=CAC29958.1;transl_table=11
AL450380.1	EMBL	sequence_feature	550409	550465	.	-	.	ID=id-ML0450;Note=PS01235 Uncharacterized protein family UPF0019 signature;gbkey=misc_feature;gene=ML0450
AL450380.1	EMBL	sequence_feature	550442	551062	.	-	.	ID=id-ML0450-2;Note=Pfam match to entry PF01680 UPF0019%2C Uncharacterized protein family SNZ%2C score 443.10%2C E-value 2.4e-129;gbkey=misc_feature;gene=ML0450
AL450380.1	EMBL	gene	551191	552240	.	-	.	ID=gene-ML0451;Name=ML0451;gbkey=Gene;gene=ML0451;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	551191	552240	.	-	0	ID=cds-CAC29959.1;Parent=gene-ML0451;Dbxref=GOA:Q7AQJ1,InterPro:IPR000086,InterPro:IPR015797,InterPro:IPR020084,UniProtKB/TrEMBL:Q7AQJ1,NCBI_GP:CAC29959.1;Name=CAC29959.1;Note=Similar to M. tuberculosis Rv2609c%2C conserved hypothetical protein%2C TR:O06205 (EMBL:AL123456) (351 aa)%3B Fasta score E(): 0%2C 77.7%25 identity in 336 aa overlap. Similar%2C in part%2C to hypothetical proteins from Streptomyces coelicolor e.g. SC2E1.17%2C hypothetical protein%2C TR:O69888 (EMBL:AL023797) (172 aa)%3B Fasta score E(): 2e-13%2C 43.3%25 identity in 150 aa overlap. Previously sequenced as TR:O07146 (EMBL:Z96801) (349 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 349 aa overlap. Contains PS00893 mutT domain signature.;gbkey=CDS;gene=ML0451;product=conserved hypothetical protein;protein_id=CAC29959.1;transl_table=11
AL450380.1	EMBL	sequence_feature	551545	551604	.	-	.	ID=id-ML0451;Note=PS00893 mutT domain signature;gbkey=misc_feature;gene=ML0451
AL450380.1	EMBL	gene	552240	553364	.	-	.	ID=gene-ML0452;Name=ML0452;gbkey=Gene;gene=ML0452;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	552240	553364	.	-	0	ID=cds-CAC29960.1;Parent=gene-ML0452;Dbxref=GOA:O07147,InterPro:IPR001296,InterPro:IPR028098,NCBI_GP:CAC29960.1;Name=CAC29960.1;Note=Similar to M. tuberculosis Rv2610c putative glycosyltransferase%2C TR:O06204 (EMBL:AL123456) (378 aa)%3B Fasta score E(): 0%2C 82.3%25 identity in 378 aa overlap. Similar to Synechococcus sp. sqdX%2C required for biosynthesis of the sulfolipid sulfoquinovosyldiacylglycerol%2C TR:Q9R6U1 (EMBL:U45308) (377 aa)%3B Fasta score E(): 6.9e-12%2C 25.9%25 identity in 390 aa overlap and to CDS from the Bordetella parapertussis ipopolysaccharide biosynthesis locus e.g. wlbH%2C putative glcNac transferase%2C TR:O52848 (EMBL:AJ224768) (390 aa)%3B Fasta score E(): 6.1e-12%2C 27.3%25 identity in 392 aa overlap. Previously sequenced as TR:O07147 (EMBL:Z96801) (374 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 374 aa overlap. Contains Pfam match to entry PF00534 Glycos_transf_1%2C Glycosyl transferases group 1. Contains PS00017 ATP/GTP-binding site motif A (P-loop).%3B~Show weak similarity to ML0886%2C ML1715 and ML2443;gbkey=CDS;gene=ML0452;product=putative glycosyltransferase;protein_id=CAC29960.1;transl_table=11
AL450380.1	EMBL	sequence_feature	552336	552800	.	-	.	ID=id-ML0452;Note=Pfam match to entry PF00534 Glycos_transf_1%2C Glycosyl transferases group 1%2C score 113.20%2C E-value 2.7e-30;gbkey=misc_feature;gene=ML0452
AL450380.1	EMBL	sequence_feature	552795	552818	.	-	.	ID=id-ML0452-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML0452
AL450380.1	EMBL	gene	553374	554336	.	-	.	ID=gene-ML0453;Name=ML0453;gbkey=Gene;gene=ML0453;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	553374	554336	.	-	0	ID=cds-CAC29961.1;Parent=gene-ML0453;Dbxref=GOA:Q7AQJ0,InterPro:IPR002123,InterPro:IPR004960,UniProtKB/TrEMBL:Q7AQJ0,NCBI_GP:CAC29961.1;Name=CAC29961.1;Note=Similar to M. tuberculosis Rv2611c%2C conserved hypothetical protein%2C TR:O06203 (EMBL:AL123456) (316 aa)%3B Fasta score E(): 0%2C 71.5%25 identity in 312 aa overlap. Shows weak similarity to putative acyltransferases e.g. Campylobacter jejuni lipid A biosynthesis acyltransferase%2C TR:AAF31766 (EMBL:AF130984) (295 aa)%3B Fasta score E(): 0.00017%2C 20.0%25 identity in 180 aa overlap. previously sequenced as TR:O07148 (EMBL:Z96801) (320 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 320 aa overlap.;gbkey=CDS;gene=ML0453;product=conserved hypothetical protein;protein_id=CAC29961.1;transl_table=11
AL450380.1	EMBL	gene	554333	555052	.	-	.	ID=gene-pgsA;Name=pgsA;gbkey=Gene;gene=pgsA;gene_biotype=protein_coding;gene_synonym=ML0454
AL450380.1	EMBL	CDS	554333	555052	.	-	0	ID=cds-CAC29962.1;Parent=gene-pgsA;Dbxref=GOA:Q7AQI9,InterPro:IPR000462,UniProtKB/TrEMBL:Q7AQI9,NCBI_GP:CAC29962.1;Name=CAC29962.1;Note=Similar to M. tuberculosis pgsA%2C Rv2612c%2C putative CDP-alcohol phosphatidyltransferases%2C TR:O06202 (EMBL:AL123456) (217 aa)%3B Fasta score E(): 0%2C 79.3%25 identity in 213 aa overlap. Shows weak similarity to Escherichia coli pgsA%2C CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase%2C SW:PGSA_ECOLI (P06978) (738 aa)%3B BlastP Expect 8.6. Previously sequenced as TR:O07149 (EMBL:Z96801) (239 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 239 aa overlap. Contains Pfam match to entry PF01066 CDP-OH_P_transf%2C CDP-alcohol phosphatidyltransferase. Contains PS00379 CDP-alcohol phosphatidyltransferases signature.;gbkey=CDS;gene=pgsA;product=putative phosphatidyltransferase;protein_id=CAC29962.1;transl_table=11
AL450380.1	EMBL	sequence_feature	554447	554881	.	-	.	ID=id-pgsA;Note=Pfam match to entry PF01066 CDP-OH_P_transf%2C CDP-alcohol phosphatidyltransferase%2C score 103.60%2C E-value 3.9e-27;gbkey=misc_feature;gene=pgsA
AL450380.1	EMBL	sequence_feature	554774	554842	.	-	.	ID=id-pgsA-2;Note=PS00379 CDP-alcohol phosphatidyltransferases signature;gbkey=misc_feature;gene=pgsA
AL450380.1	EMBL	gene	555049	555669	.	-	.	ID=gene-ML0455;Name=ML0455;gbkey=Gene;gene=ML0455;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	555049	555669	.	-	0	ID=cds-CAC29963.1;Parent=gene-ML0455;Dbxref=GOA:Q9CCU0,InterPro:IPR001310,InterPro:IPR011146,UniProtKB/TrEMBL:Q9CCU0,NCBI_GP:CAC29963.1;Name=CAC29963.1;Note=Similar to M. tuberculosis Rv2613c%2C conserved hypothetical protein%2C TR:O06201 (EMBL:AL123456) (195 aa)%3B Fasta score E(): 0%2C 84.7%25 identity in 196 aa overlap. Similar to many HIT-family hypothetical proteins. Previously sequenced as TR:O07150 (EMBL:Z96801) (186 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 186 aa overlap. Contains Pfam match to entry PF01230 HIT%2C HIT family.;gbkey=CDS;gene=ML0455;product=conserved hypothetical protein;protein_id=CAC29963.1;transl_table=11
AL450380.1	EMBL	sequence_feature	555196	555507	.	-	.	ID=id-ML0455;Note=Pfam match to entry PF01230 HIT%2C HIT family%2C score 45.80%2C E-value 9.3e-10;gbkey=misc_feature;gene=ML0455
AL450380.1	EMBL	gene	555662	557770	.	-	.	ID=gene-thrS;Name=thrS;gbkey=Gene;gene=thrS;gene_biotype=protein_coding;gene_synonym=ML0456
AL450380.1	EMBL	CDS	555662	557770	.	-	0	ID=cds-CAC29964.1;Parent=gene-thrS;Dbxref=GOA:O07151,InterPro:IPR002314,InterPro:IPR002320,InterPro:IPR004154,InterPro:IPR006195,InterPro:IPR012947,InterPro:IPR018163,NCBI_GP:CAC29964.1;Name=CAC29964.1;Note=Similar to M. tuberculosis thrS%2C Rv2614c%2C threonyl-tRNA synthetase%2C SW:SYT_MYCTU (O06200) (692 aa)%3B Fasta score E(): 0%2C 84.0%25 identity in 702 aa overlap. Similar to many e.g. Thermus aquaticus thrS%2C threonyl-tRNA synthetase%2C SW:SYT_THETH (P56881) (659 aa)%3B Fasta score E(): 0%2C 45.0%25 identity in 645 aa overlap. Previously sequenced as SW:SYT_MYCLE (O07151) (702 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 702 aa overlap. Contains Pfam match to entry PF00587 tRNA-synt_2b%2C tRNA synthetase class II (G%2C H%2C P%2C S and T). Contains PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2. Contains PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.;gbkey=CDS;gene=thrS;product=threonyl-tRNA synthetase;protein_id=CAC29964.1;transl_table=11
AL450380.1	EMBL	sequence_feature	555767	556945	.	-	.	ID=id-thrS;Note=Pfam match to entry PF00587 tRNA-synt_2b%2C tRNA synthetase class II (G%2C H%2C P%2C S and T)%2C score 245.80%2C E-value 5.8e-70;gbkey=misc_feature;gene=thrS
AL450380.1	EMBL	sequence_feature	556046	556075	.	-	.	ID=id-thrS-2;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2;gbkey=misc_feature;gene=thrS
AL450380.1	EMBL	sequence_feature	556472	556537	.	-	.	ID=id-thrS-3;Note=PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1;gbkey=misc_feature;gene=thrS
AL450380.1	EMBL	pseudogene	557908	558313	.	-	.	ID=gene-ML0457;Name=ML0457;gbkey=Gene;gene=ML0457;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	557908	558313	.	-	0	ID=cds-ML0457;Parent=gene-ML0457;Note=Possible pseudogene similar to M. tuberculosis Rv0356c (Best blastx score 97);gbkey=CDS;gene=ML0457;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	558363	559268	.	-	.	ID=gene-ML0458;Name=ML0458;gbkey=Gene;gene=ML0458;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	558363	559268	.	-	0	ID=cds-CAC29966.1;Parent=gene-ML0458;Dbxref=GOA:Q9CCT9,InterPro:IPR001395,InterPro:IPR020471,InterPro:IPR023210,UniProtKB/TrEMBL:Q9CCT9,NCBI_GP:CAC29966.1;Name=CAC29966.1;Note=Similar to putative oxidoreductases from both bacteria and eukaryotes e.g. Schizosaccharomyces pombe SPBC215.11C%2C putative aldo-keto reductase%2C TR:O94315 (EMBL:AL033534) (306 aa)%3B Fasta score E(): 0%2C 53.5%25 identity in 288 aa overlap. Previously sequenced as TR:O07152 (EMBL:Z96801) (306 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 301 aa overlap. Contains 2 Pfam matches to entry PF00248 aldo_ket_red%2C Aldo/keto reductase family.;gbkey=CDS;gene=ML0458;product=putative oxidoreductase;protein_id=CAC29966.1;transl_table=11
AL450380.1	EMBL	sequence_feature	558378	558602	.	-	.	ID=id-ML0458;Note=Pfam match to entry PF00248 aldo_ket_red%2C Aldo/keto reductase family%2C score 14.70%2C E-value 0.0036;gbkey=misc_feature;gene=ML0458
AL450380.1	EMBL	sequence_feature	558741	558779	.	-	.	ID=id-ML0458-2;Note=Pfam match to entry PF00248 aldo_ket_red%2C Aldo/keto reductase family%2C score 1.00%2C E-value 28;gbkey=misc_feature;gene=ML0458
AL450380.1	EMBL	pseudogene	559293	559666	.	+	.	ID=gene-ML0459;Name=ML0459;gbkey=Gene;gene=ML0459;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	559293	559666	.	+	0	ID=cds-ML0459;Parent=gene-ML0459;Note=Possible pseudogene of M. tuberculosis orthologue Rv2616 (Best blastx score 154);gbkey=CDS;gene=ML0459;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	559771	559989	.	-	.	ID=gene-ML0460;Name=ML0460;gbkey=Gene;gene=ML0460;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	559771	559989	.	-	0	ID=cds-ML0460;Parent=gene-ML0460;Note=Possible pseudogene of M. tuberculosis orthologue Rv2617c (Best blastx score 163);gbkey=CDS;gene=ML0460;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	560205	560551	.	+	.	ID=gene-ML0461;Name=ML0461;gbkey=Gene;gene=ML0461;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	560205	560551	.	+	0	ID=cds-ML0461;Parent=gene-ML0461;Note=Possible pseudogene of M. tuberculosis orthologue Rv2618 (Best blastx score 222);gbkey=CDS;gene=ML0461;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	561078	561563	.	-	.	ID=gene-ML0462;Name=ML0462;gbkey=Gene;gene=ML0462;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	561078	561563	.	-	0	ID=cds-ML0462;Parent=gene-ML0462;Note=Possible pseudogene similar to M. tuberculosis Rv0021c (Best blastx score 169);gbkey=CDS;gene=ML0462;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	561579	561828	.	-	.	ID=gene-ML0463;Name=ML0463;gbkey=Gene;gene=ML0463;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	561579	561828	.	-	0	ID=cds-ML0463;Parent=gene-ML0463;Note=Possible pseudogene similar to M. tuberculosis Rv2619c (Best blastx score 147);gbkey=CDS;gene=ML0463;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	561808	562095	.	+	.	ID=gene-ML0464;Name=ML0464;gbkey=Gene;gene=ML0464;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	561808	562095	.	+	0	ID=cds-CAC29972.1;Parent=gene-ML0464;Dbxref=UniProtKB/TrEMBL:Q9CCT8,NCBI_GP:CAC29972.1;Name=CAC29972.1;Note=Unknown function. Previously sequenced as TR:O07155 (EMBL:Z96801) (110 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 95 aa overlap.;gbkey=CDS;gene=ML0464;product=hypothetical protein;protein_id=CAC29972.1;transl_table=11
AL450380.1	EMBL	pseudogene	562650	563430	.	+	.	ID=gene-ML0465;Name=ML0465;gbkey=Gene;gene=ML0465;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	562650	563430	.	+	0	ID=cds-ML0465;Parent=gene-ML0465;Note=Possible pseudogene of M. tuberculosis orthologue Rv1320c (Best blastx score 85);gbkey=CDS;gene=ML0465;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	563632	564537	.	+	.	ID=gene-ML0466;Name=ML0466;gbkey=Gene;gene=ML0466;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	563632	564537	.	+	0	ID=cds-CAC29974.1;Parent=gene-ML0466;Dbxref=GOA:Q7AQI8,InterPro:IPR001087,InterPro:IPR013831,UniProtKB/TrEMBL:Q7AQI8,NCBI_GP:CAC29974.1;Name=CAC29974.1;Note=Similar to Streptomyces coelicolor SC6A5.23%2C hypothetical protein%2C TR:Q9X7W9 (EMBL:AL049485) (261 aa)%3B Fasta score E(): 9.5e-26%2C 36.4%25 identity in 253 aa overlap. Previously sequenced as TR:O07156 (EMBL:Z96801) (301 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 301 aa overlap. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=ML0466;product=possible secreted protein;protein_id=CAC29974.1;transl_table=11
AL450380.1	EMBL	gene	564583	565227	.	+	.	ID=gene-dedA;Name=dedA;gbkey=Gene;gene=dedA;gene_biotype=protein_coding;gene_synonym=ML0467
AL450380.1	EMBL	CDS	564583	565227	.	+	0	ID=cds-CAC29975.1;Parent=gene-dedA;Dbxref=GOA:Q49642,InterPro:IPR015414,NCBI_GP:CAC29975.1;Name=CAC29975.1;Note=Similar to M. tuberculosis dedA%2C Rv2637%2C dedA-family protein%2C SW:YQ37_MYCTU (P71936) (218 aa)%3B Fasta score E(): 0%2C 82.8%25 identity in 209 aa overlap. Similar to many dedA-family hypothetical proteins. Previously sequenced as SW:YQ37_MYCLE (Q49642) (214 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 214 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions. Contains Pfam match to entry PF00597 DedA%2C DedA family.;gbkey=CDS;gene=dedA;product=putative membrane protein;protein_id=CAC29975.1;transl_table=11
AL450380.1	EMBL	sequence_feature	564634	565119	.	+	.	ID=id-dedA;Note=Pfam match to entry PF00597 DedA%2C DedA family%2C score 48.10%2C E-value 2e-10;gbkey=misc_feature;gene=dedA
AL450380.1	EMBL	gene	566057	566839	.	-	.	ID=gene-ML0468;Name=ML0468;gbkey=Gene;gene=ML0468;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	566057	566839	.	-	0	ID=cds-CAC29976.1;Parent=gene-ML0468;Dbxref=GOA:Q49657,InterPro:IPR002781,UniProtKB/TrEMBL:Q49657,NCBI_GP:CAC29976.1;Name=CAC29976.1;Note=Similar to bacterial hypothetical proteins e.g. Aeropyrum pernix APE0183%2C hypothetical protein%2C TR:Q9YFR6 (EMBL:AP000058) (270 aa)%3B Fasta score E(): 7.2e-07%2C 26.2%25 identity in 256 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0468;product=putative membrane protein;protein_id=CAC29976.1;transl_table=11
AL450380.1	EMBL	pseudogene	567986	569438	.	+	.	ID=gene-ML0469;Name=ML0469;gbkey=Gene;gene=ML0469;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	567986	569438	.	+	0	ID=cds-ML0469;Parent=gene-ML0469;Note=Possible pseudogene similar to M. tuberculosis fadD13 (Best blastx score 97);gbkey=CDS;gene=ML0469;product=acyl-CoA synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	571603	571893	.	-	.	ID=gene-ML0470;Name=ML0470;gbkey=Gene;gene=ML0470;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	571603	571893	.	-	0	ID=cds-CAC29978.1;Parent=gene-ML0470;Dbxref=UniProtKB/TrEMBL:Q7AQI7,NCBI_GP:CAC29978.1;Name=CAC29978.1;Note=Unknown function. Previously sequenced as TR:O07161 (EMBL:Z96801) (96 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 96 aa overlap.;gbkey=CDS;gene=ML0470;product=hypothetical protein;protein_id=CAC29978.1;transl_table=11
AL450380.1	EMBL	pseudogene	573279	573918	.	+	.	ID=gene-ML0471;Name=ML0471;gbkey=Gene;gene=ML0471;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	573279	573918	.	+	0	ID=cds-ML0471;Parent=gene-ML0471;Note=Possible ferrous iron transport protein pseudogene;gbkey=CDS;gene=ML0471;product=ferrous iron transport protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	574032	574274	.	+	.	ID=gene-ML0472;Name=ML0472;gbkey=Gene;gene=ML0472;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	574032	574274	.	+	0	ID=cds-CAC29980.1;Parent=gene-ML0472;Dbxref=UniProtKB/TrEMBL:Q9CCT7,NCBI_GP:CAC29980.1;Name=CAC29980.1;Note=Improbable CDS suggested by GC frameplot and codon usage plots. Possibly the remains of a disrupted gene.;gbkey=CDS;gene=ML0472;product=hypothetical protein;protein_id=CAC29980.1;transl_table=11
AL450380.1	EMBL	gene	574538	574810	.	+	.	ID=gene-ML0473;Name=ML0473;gbkey=Gene;gene=ML0473;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	574538	574810	.	+	0	ID=cds-CAC29981.1;Parent=gene-ML0473;Dbxref=UniProtKB/TrEMBL:Q9CCT6,NCBI_GP:CAC29981.1;Name=CAC29981.1;Note=Improbable CDS suggested by GC frameplot and codon usage plots. Possibly the remains of a disrupted gene.;gbkey=CDS;gene=ML0473;product=hypothetical protein;protein_id=CAC29981.1;transl_table=11
AL450380.1	EMBL	gene	575469	576140	.	+	.	ID=gene-ML0474;Name=ML0474;gbkey=Gene;gene=ML0474;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	575469	576140	.	+	0	ID=cds-CAC29982.1;Parent=gene-ML0474;Dbxref=GOA:Q9CCT5,InterPro:IPR002161,InterPro:IPR021196,InterPro:IPR029062,NCBI_GP:CAC29982.1;Name=CAC29982.1;Note=Similar to M. tuberculosis Rv2604c%2C conserved hypothetical protein%2C TR:O06210 (EMBL:AL123456) (198 aa)%3B Fasta score E(): 0%2C 82.8%25 identity in 198 aa overlap. Similar to many bacterial hypothetical proteins. Shows weak similarity to amidotransferases e.g. Streptomyces coelicolor hisH%2C amidotransferase from histidine biosynthetic pathway%2C SW:HIS5_STRCO (P16249) (213 aa)%3B BlastP Expect 9.8. Previously sequenced as TR:Q49637 (EMBL:U00011) (219 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 219 aa overlap. Contains Pfam match to entry PF01174 UPF0030%2C Uncharacterized protein family UPF0030.;gbkey=CDS;gene=ML0474;product=conserved hypothetical protein;protein_id=CAC29982.1;transl_table=11
AL450380.1	EMBL	sequence_feature	575565	576131	.	+	.	ID=id-ML0474;Note=Pfam match to entry PF01174 UPF0030%2C Uncharacterized protein family UPF0030%2C score 244.20%2C E-value 1.8e-69;gbkey=misc_feature;gene=ML0474
AL450380.1	EMBL	gene	576361	577116	.	+	.	ID=gene-ML0475;Name=ML0475;gbkey=Gene;gene=ML0475;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	576361	577116	.	+	0	ID=cds-CAC29983.1;Parent=gene-ML0475;Dbxref=GOA:Q49645,InterPro:IPR002876,InterPro:IPR017856,InterPro:IPR026563,InterPro:IPR026564,InterPro:IPR029072,NCBI_GP:CAC29983.1;Name=CAC29983.1;Note=Similar to M. tuberculosis Rv2603c%2C conserved hypothetical protein%2C SW:YQ03_MYCTU (O33214) (251 aa)%3B Fasta score E(): 0%2C 92.4%25 identity in 251 aa overlap . Similar to many bacterial hypothetical proteins. Previously sequenced as SW:YQ03_MYCLE (Q49645) (251 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 251 aa overlap. Contains Pfam match to entry PF01709 DUF28%2C Domain of unknown function.;gbkey=CDS;gene=ML0475;product=conserved hypothetical protein;protein_id=CAC29983.1;transl_table=11
AL450380.1	EMBL	sequence_feature	576373	577077	.	+	.	ID=id-ML0475;Note=Pfam match to entry PF01709 DUF28%2C Domain of unknown function%2C score 446.90%2C E-value 1.7e-130;gbkey=misc_feature;gene=ML0475
AL450380.1	EMBL	pseudogene	577202	579167	.	-	.	ID=gene-speE;Name=speE;gbkey=Gene;gene=speE;gene_biotype=pseudogene;gene_synonym=ML0476;pseudo=true
AL450380.1	EMBL	CDS	577202	579167	.	-	0	ID=cds-speE;Parent=gene-speE;Note=Possible pseudogene of M. tuberculosis orthologue speE%2C interrupted by insertion of an RLEP repeat (Best blastx score 229);gbkey=CDS;gene=speE;product=spermidine synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	577796	578589	.	+	.	ID=id-AL450380.1:577796..578589;Note=Dispersed repeat%2C RLEP%2C copy 8;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	579203	579570	.	-	.	ID=gene-ML0477;Name=ML0477;gbkey=Gene;gene=ML0477;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	579203	579570	.	-	0	ID=cds-ML0477;Parent=gene-ML0477;Note=Possible pseudogene of M. tuberculosis orthologue Rv2600 (Best blastx score 202);gbkey=CDS;gene=ML0477;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	579687	580079	.	-	.	ID=gene-ML0478;Name=ML0478;gbkey=Gene;gene=ML0478;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	579687	580079	.	-	0	ID=cds-ML0478;Parent=gene-ML0478;Note=Possible pseudogene of M. tuberculosis orthologue Rv2599 (Best blastx score 115);gbkey=CDS;gene=ML0478;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	580137	580325	.	-	.	ID=gene-ML0479;Name=ML0479;gbkey=Gene;gene=ML0479;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	580137	580325	.	-	0	ID=cds-ML0479;Parent=gene-ML0479;Note=Possible pseudogene of M. tuberculosis orthologue Rv2598 (Best blastx score 204);gbkey=CDS;gene=ML0479;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	580453	581050	.	-	.	ID=gene-ML0480;Name=ML0480;gbkey=Gene;gene=ML0480;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	580453	581050	.	-	0	ID=cds-ML0480;Parent=gene-ML0480;Note=Possible pseudogene of M. tuberculosis orthologue Rv2597 (Best blastx score 175);gbkey=CDS;gene=ML0480;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	581224	581790	.	+	.	ID=gene-ruvC;Name=ruvC;gbkey=Gene;gene=ruvC;gene_biotype=protein_coding;gene_synonym=ML0481
AL450380.1	EMBL	CDS	581224	581790	.	+	0	ID=cds-CAC29989.1;Parent=gene-ruvC;Dbxref=GOA:P40834,InterPro:IPR002176,InterPro:IPR012337,InterPro:IPR020563,NCBI_GP:CAC29989.1;Name=CAC29989.1;Note=Similar to M. tuberculosis ruvC%2C Rv2594c%2C crossover junction endodeoxyribonuclease%2C SW:RUVC_MYCTU (Q50627) (188 aa)%3B Fasta score E(): 0%2C 81.5%25 identity in 184 aa overlap. Similar to many e.g. Pseudomonas aeruginosa ruvC%2C crossover junction endodeoxyribonuclease%2C SW:RUVC_PSEAE (Q51424) (174 aa)%3B Fasta score E(): 3.2e-15%2C 37.8%25 identity in 172 aa overlap. Previously sequenced as SW:RUVC_MYCLE (P40834) (188 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 188 aa overlap. Contains Pfam match to entry PF02075 RuvC%2C Crossover junction endodeoxyribonuclease RuvC. Contains PS01321 Crossover junction endodeoxyribonuclease ruvC signature. Contains PS00572 Glycosyl hydrolases family 1 active site.;gbkey=CDS;gene=ruvC;product=crossover junction endodeoxyribonuclease;protein_id=CAC29989.1;transl_table=11
AL450380.1	EMBL	sequence_feature	581230	581679	.	+	.	ID=id-ruvC;Note=Pfam match to entry PF02075 RuvC%2C Crossover junction endodeoxyribonuclease RuvC%2C score 325.40%2C E-value 6.7e-94;gbkey=misc_feature;gene=ruvC
AL450380.1	EMBL	sequence_feature	581266	581292	.	+	.	ID=id-ruvC-2;Note=PS00572 Glycosyl hydrolases family 1 active site;gbkey=misc_feature;gene=ruvC
AL450380.1	EMBL	sequence_feature	581563	581670	.	+	.	ID=id-ruvC-3;Note=PS01321 Crossover junction endodeoxyribonuclease ruvC signature;gbkey=misc_feature;gene=ruvC
AL450380.1	EMBL	gene	581787	582398	.	+	.	ID=gene-ruvA;Name=ruvA;gbkey=Gene;gene=ruvA;gene_biotype=protein_coding;gene_synonym=ML0482
AL450380.1	EMBL	CDS	581787	582398	.	+	0	ID=cds-CAC29990.1;Parent=gene-ruvA;Dbxref=GOA:P40832,InterPro:IPR000085,InterPro:IPR003583,InterPro:IPR010994,InterPro:IPR011114,InterPro:IPR012340,InterPro:IPR013849,PDB:1BVS,NCBI_GP:CAC29990.1;Name=CAC29990.1;Note=Similar to M. tuberculosis ruvA%2C Rv2593c%2C Holliday junction DNA helicase%2C SW:RUVA_MYCTU (Q50628) (196 aa)%3B Fasta score E(): 0%2C 76.4%25 identity in 203 aa overlap. Similar to many e.g. Escherichia coli ruvA%2C Holliday junction DNA helicase%2C SW:RUVA_ECOLI (P08576) (203 aa)%3B Fasta score E(): 7e-14%2C 32.7%25 identity in 205 aa overlap. Previously sequenced as SW:RUVA_MYCLE (P40832) (203 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 203 aa overlap. Contains Pfam match to entry PF01330 RuvA%2C Bacterial DNA recombination protein%2C RuvA.;gbkey=CDS;gene=ruvA;product=Holliday junction DNA helicase component;protein_id=CAC29990.1;transl_table=11
AL450380.1	EMBL	sequence_feature	581820	582386	.	+	.	ID=id-ruvA;Note=Pfam match to entry PF01330 RuvA%2C Bacterial DNA recombination protein%2C RuvA%2C score 319.80%2C E-value 3.2e-92;gbkey=misc_feature;gene=ruvA
AL450380.1	EMBL	gene	582395	583444	.	+	.	ID=gene-ruvB;Name=ruvB;gbkey=Gene;gene=ruvB;gene_biotype=protein_coding;gene_synonym=ML0483
AL450380.1	EMBL	CDS	582395	583444	.	+	0	ID=cds-CAC29991.1;Parent=gene-ruvB;Dbxref=GOA:P40833,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR004605,InterPro:IPR008823,InterPro:IPR011991,InterPro:IPR027417,NCBI_GP:CAC29991.1;Name=CAC29991.1;Note=Similar to M. tuberculosis ruvB%2C Rv2592c%2C Holliday junction DNA helicase%2C SW:RUVB_MYCTU (Q50629) (344 aa)%3B Fasta score E(): 0%2C 94.4%25 identity in 342 aa overlap. Similar to many e.g. Escherichia coli ruvB%2C Holliday junction DNA helicase%2C SW:RUVB_ECOLI (P08577) (336 aa)%3B Fasta score E(): 0%2C 54.1%25 identity in 329 aa overlap. Previously sequenced as SW:RUVB_MYCLE (P40833) (369 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 322 aa overlap. Contains Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA). Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ruvB;product=Holliday junction helicase component;protein_id=CAC29991.1;transl_table=11
AL450380.1	EMBL	sequence_feature	582569	583156	.	+	.	ID=id-ruvB;Note=Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%2C score -14.30%2C E-value 0.00034;gbkey=misc_feature;gene=ruvB
AL450380.1	EMBL	sequence_feature	582584	582607	.	+	.	ID=id-ruvB-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ruvB
AL450380.1	EMBL	gene	584381	587947	.	-	.	ID=gene-fadD9;Name=fadD9;gbkey=Gene;gene=fadD9;gene_biotype=protein_coding;gene_synonym=ML0484
AL450380.1	EMBL	CDS	584381	587947	.	-	0	ID=cds-CAC29992.1;Parent=gene-fadD9;Dbxref=GOA:Q9CCT4,InterPro:IPR000873,InterPro:IPR009081,InterPro:IPR010080,InterPro:IPR013120,InterPro:IPR016040,InterPro:IPR020845,UniProtKB/TrEMBL:Q9CCT4,NCBI_GP:CAC29992.1;Name=CAC29992.1;Note=Similar to M. tuberculosis fadD9%2C Rv2590%2C putative acyl-CoA synthetase%2C TR:Q5063 (EMBL:Al123456) (1168 aa)%3B Fasta score E(): 0%2C 68.0%25 identity in 1178 aa overlap1. Similar to acyl-CoA ligases and to domains of polyketide/peptide synthetases e.g. Mycobacterium smegmatis mps%2C peptide synthetase%2C TR:Q9RLP6 (EMBL:AJ238027) (5990 aa)%3B Fasta score E(): 0%2C 37.2%25 identity in 1168 aa overlap. C-terminal half is similar to eukaryotic aminoadipate-semialdehyde dehydrogenase e.g. Saccharomyces cerevisiae lys2%2C aminoadipate-semialdehyde dehydrogenase large subunit%2C SW:LYS2_YEAST (P07702) (1392 aa)%3B Fasta score E(): 7.1e-18%2C 25.1%25 identity in 734 aa overlap. Previously sequenced as TR:O69484 (EMBL:AL023591) (1174 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 1174 aa overlap. Contains Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site. Contains Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme. Contains PS00455 Putative AMP-binding domain signature. Contains PS00061 Short-chain dehydrogenases/reductases family signature.;gbkey=CDS;gene=fadD9;product=putative acyl-CoA synthetase;protein_id=CAC29992.1;transl_table=11
AL450380.1	EMBL	sequence_feature	585002	585088	.	-	.	ID=id-fadD9;Note=PS00061 Short-chain dehydrogenases/reductases family signature;gbkey=misc_feature;gene=fadD9
AL450380.1	EMBL	sequence_feature	585779	585940	.	-	.	ID=id-fadD9-2;Note=Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site%2C score 33.60%2C E-value 1.2e-07;gbkey=misc_feature;gene=fadD9
AL450380.1	EMBL	sequence_feature	586286	587638	.	-	.	ID=id-fadD9-3;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score -100.90%2C E-value 8.7e-10;gbkey=misc_feature;gene=fadD9
AL450380.1	EMBL	sequence_feature	587129	587164	.	-	.	ID=id-fadD9-4;Note=PS00455 Putative AMP-binding domain signature;gbkey=misc_feature;gene=fadD9
AL450380.1	EMBL	gene	588043	589383	.	-	.	ID=gene-gabT;Name=gabT;gbkey=Gene;gene=gabT;gene_biotype=protein_coding;gene_synonym=ML0485
AL450380.1	EMBL	CDS	588043	589383	.	-	0	ID=cds-CAC29993.1;Parent=gene-gabT;Dbxref=GOA:P40829,InterPro:IPR004632,InterPro:IPR005814,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,NCBI_GP:CAC29993.1;Name=CAC29993.1;Note=Similar to M. tuberculosis gabT%2C Rv2589%2C 4-aminobutyrate aminotransferase%2C SW:GABT_MYCTU (Q50632) (449 aa)%3B Fasta score E(): 0%2C 83.7%25 identity in 449 aa overlap. Similar to many e.g. Escherichia coli gabT%2C 4-aminobutyrate aminotransferase%2C SW:GABT_ECOLI (P22256) (426 aa)%3B Fasta score E(): 0%2C 43.1%25 identity in 422 aa overlap. Previously sequenced as SW:GABT_MYCLE (P40829) (446 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 446 aa overlap. Contains Pfam match to entry PF00202 aminotran_3%2C Aminotransferases class-III pyridoxal-phosphate. Contains PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.%3B~Similar to ML1216%2C ML1409 and ML2414;gbkey=CDS;gene=gabT;product=putative 4-aminobutyrate aminotransferase;protein_id=CAC29993.1;transl_table=11
AL450380.1	EMBL	sequence_feature	588109	589245	.	-	.	ID=id-gabT;Note=Pfam match to entry PF00202 aminotran_3%2C Aminotransferases class-III pyridoxal-phosphate%2C score 639.30%2C E-value 7.7e-222;gbkey=misc_feature;gene=gabT
AL450380.1	EMBL	sequence_feature	588496	588609	.	-	.	ID=id-gabT-2;Note=PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site;gbkey=misc_feature;gene=gabT
AL450380.1	EMBL	ribosome_entry_site	589390	589395	.	-	.	ID=id-AL450380.1:589390..589395;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	589652	589996	.	+	.	ID=gene-ML0486;Name=ML0486;gbkey=Gene;gene=ML0486;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	589652	589996	.	+	0	ID=cds-CAC29994.1;Parent=gene-ML0486;Dbxref=GOA:Q49647,InterPro:IPR003849,NCBI_GP:CAC29994.1;Name=CAC29994.1;Note=Similar to M. tuberculosis Rv2588c%2C hypothetical protein%2C SW:YP88_MYCTU (Q50633) (115 aa)%3B Fasta score E(): 7e-29%2C 77.0%25 identity in 100 aa overlap. Similar to bacterial hypothetical proteins e.g. Streptomyces coelicolor SCL2.07C%2C putative secreted protein%2C TR:CAB70919 (EMBL:AL137778) (169 aa)%3B Fasta score E(): 7.3e-08%2C 35.8%25 identity in 120 aa overlap. Previously sequenced as SW:YP88_MYCLE (Q49647) (114 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 114 aa overlap. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=ML0486;product=putative secreted protein;protein_id=CAC29994.1;transl_table=11
AL450380.1	EMBL	gene	590036	591829	.	+	.	ID=gene-secD;Name=secD;gbkey=Gene;gene=secD;gene_biotype=protein_coding;gene_synonym=ML0487
AL450380.1	EMBL	CDS	590036	591829	.	+	0	ID=cds-CAC29995.1;Parent=gene-secD;Dbxref=GOA:P38387,InterPro:IPR005791,InterPro:IPR022645,InterPro:IPR022646,InterPro:IPR022813,NCBI_GP:CAC29995.1;Name=CAC29995.1;Note=Similar to M. tuberculosis secD%2C Rv2587c%2C putative protein-export membrane protein%2C SW:SECD_MYCTU (Q50634) (573 aa)%3B Fasta score E(): 0%2C 80.6%25 identity in 583 aa overlap. C-terminal half is similar to the corresponding region of Escherichia coli secD%2C protein-export membrane protein%2C SW:SECD_ECOLI (P19673) (689 aa)%3B BlastP Expect 0.42. Shows full length similarity to M. tuberculosis and Streptomyces coelicolor homolgues. Previously sequenced as SW:SECD_MYCLE (P38387) (571 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 571 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=secD;product=putative protein-export membrane protein;protein_id=CAC29995.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	591817	591822	.	+	.	ID=id-secD;Parent=gene-secD;Note=possible RBS;gbkey=regulatory;gene=secD;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	591834	593249	.	+	.	ID=gene-secF;Name=secF;gbkey=Gene;gene=secF;gene_biotype=protein_coding;gene_synonym=ML0488
AL450380.1	EMBL	CDS	591834	593249	.	+	0	ID=cds-CAC29996.1;Parent=gene-secF;Dbxref=GOA:P38386,InterPro:IPR005665,InterPro:IPR022645,InterPro:IPR022646,InterPro:IPR022813,NCBI_GP:CAC29996.1;Name=CAC29996.1;Note=Similar to M. tuberculosis secF%2C Rv2586c%2C putative protein-export membrane protein%2C SW:SECF_MYCTU (Q50635) (442 aa)%3B Fasta score E(): 0%2C 72.1%25 identity in 456 aa overlap. Similar to Escherichia coli secF%2C protein-export membrane protein%2C SW:SECF_ECOLI (P19674) (189 aa)%3B BlastP Expect 8.5. Previously sequenced as SW:SECF_MYCLE (P38386) (394 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 394 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=secF;product=putative protein-export membrane protein;protein_id=CAC29996.1;transl_table=11
AL450380.1	EMBL	gene	593294	594961	.	+	.	ID=gene-ML0489;Name=ML0489;gbkey=Gene;gene=ML0489;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	593294	594961	.	+	0	ID=cds-CAC29997.1;Parent=gene-ML0489;Dbxref=GOA:Q49646,InterPro:IPR000914,NCBI_GP:CAC29997.1;Name=CAC29997.1;Note=Similar to M. tuberculosis Rv2585c%2C hypothetical protein%2C SW:YP85_MYCTU (Q50636) (557 aa)%3B Fasta score E(): 0%2C 78.9%25 identity in 546 aa overlap. Previously sequenced as SW:YP85_MYCLE (Q49646) (426 aa)%3B Fasta score E(): 0%2C 98.8%25 identity in 332 aa overlap. Contains a probable N-terminal signal sequence. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=ML0489;product=putative lipoprotein;protein_id=CAC29997.1;transl_table=11
AL450380.1	EMBL	sequence_feature	593348	593380	.	+	.	ID=id-ML0489;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=ML0489
AL450380.1	EMBL	pseudogene	594985	595504	.	+	.	ID=gene-apt;Name=apt;gbkey=Gene;gene=apt;gene_biotype=pseudogene;gene_synonym=ML0490;pseudo=true
AL450380.1	EMBL	CDS	594985	595504	.	+	0	ID=cds-apt;Parent=gene-apt;Note=Possible pseudogene of M. tuberculosis orthologue apt (Best blastx score 222);gbkey=CDS;gene=apt;product=adenine phosphoribosyltransferases (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	595594	595600	.	+	.	ID=id-AL450380.1:595594..595600;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	595607	597970	.	+	.	ID=gene-relA;Name=relA;gbkey=Gene;gene=relA;gene_biotype=protein_coding;gene_synonym=ML0491
AL450380.1	EMBL	CDS	595607	597970	.	+	0	ID=cds-CAC29999.1;Parent=gene-relA;Dbxref=GOA:Q49640,InterPro:IPR002912,InterPro:IPR003607,InterPro:IPR004095,InterPro:IPR004811,InterPro:IPR007685,InterPro:IPR012675,InterPro:IPR012676,NCBI_GP:CAC29999.1;Name=CAC29999.1;Note=Similar to M. tuberculosis relA%2C Rv2583c%2C putative GTP pyrophosphokinase%2C SW:RELA_MYCTU (Q50638) (790 aa)%3B Fasta score E(): 0%2C 93.4%25 identity in 790 aa overlap. Similar to many e.g. Corynebacterium glutamicum relA%2C GTP pyrophosphokinase%2C SW:RELA_CORGL (O87331) (760 aa)%3B Fasta score E(): 0%2C 66.0%25 identity in 756 aa overlap. Previously sequenced as SW:RELA_MYCLE (Q49640) (787 aa)%3B Fasta score E(): 0%2C 99.9%25 identity in 787 aa overlap. Contains a probable helix-turn-helix motif at aa 41-62 (Score 1005%2C SD +2.61) Contains Pfam match to entry PF01842 ACT%2C ACT domain.;gbkey=CDS;gene=relA;product=putative GTP pyrophosphokinase;protein_id=CAC29999.1;transl_table=11
AL450380.1	EMBL	sequence_feature	597734	597952	.	+	.	ID=id-relA;Note=Pfam match to entry PF01842 ACT%2C ACT domain%2C score 49.70%2C E-value 6.3e-11;gbkey=misc_feature;gene=relA
AL450380.1	EMBL	gene	598029	598916	.	-	.	ID=gene-ppiB;Name=ppiB;gbkey=Gene;gene=ppiB;gene_biotype=protein_coding;gene_synonym=ML0492
AL450380.1	EMBL	CDS	598029	598916	.	-	0	ID=cds-CAC30000.1;Parent=gene-ppiB;Dbxref=GOA:P46697,InterPro:IPR002130,InterPro:IPR029000,NCBI_GP:CAC30000.1;Name=CAC30000.1;Note=Similar to M. tuberculosis ppiB%2C Rv2582%2C putative peptidyl-prolyl cis-trans isomerase%2C SW:CYPB_MYCTU (Q50639) (308 aa)%3B Fasta score E(): 0%2C 72.5%25 identity in 295 aa overlap. Shows weak similarity to part of Caenorhabditis elegans cvp-1%2C peptidyl-prolyl cis-trans isomerase 1%2C SW:CYP1_CAEEL (P52009) (192 aa)%3B Fasta score E(): 0.00071%2C 36.4%25 identity in 165 aa overlap. Previously sequenced as SW:CYPB_MYCLE (P46697) (295 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 295 aa overlap. Contains hydrophobic%2C possible membrane-spanning region. Alternatively%2C this may represent an N-terminal signal sequence%2C given teh potential start codon at codon 33. Contains Pfam match to entry PF00160 pro_isomerase%2C Cyclophilin type peptidyl-prolyl cis-trans isomerase.;gbkey=CDS;gene=ppiB;product=putative peptidyl-prolyl cis-trans isomerase;protein_id=CAC30000.1;transl_table=11
AL450380.1	EMBL	sequence_feature	598197	598538	.	-	.	ID=id-ppiB;Note=Pfam match to entry PF00160 pro_isomerase%2C Cyclophilin type peptidyl-prolyl cis-trans isomerase%2C score 42.80%2C E-value 2.4e-11;gbkey=misc_feature;gene=ppiB
AL450380.1	EMBL	ribosome_entry_site	598927	598931	.	-	.	ID=id-AL450380.1:598927..598931;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	599080	599736	.	+	.	ID=gene-ML0493;Name=ML0493;gbkey=Gene;gene=ML0493;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	599080	599736	.	+	0	ID=cds-CAC30001.1;Parent=gene-ML0493;Dbxref=GOA:Q49649,InterPro:IPR001279,NCBI_GP:CAC30001.1;Name=CAC30001.1;Note=Similar to M. tuberculosis Rv2581c%2C hypothetical protein%2C SW:YP81_MYCTU (Q50640) (224 aa)%3B Fasta score E(): 0%2C 82.0%25 identity in 222 aa overlap. Similar to many bacterial hypothetical proteins. Previously sequenced as SW:YP81_MYCLE (Q49649) (218 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 218 aa overlap. Contains Pfam match to entry PF00753 lactamase_B%2C Metallo-beta-lactamase superfamily.%3B~Similar to ML1391 and ML1912;gbkey=CDS;gene=ML0493;product=putative hydrolase;protein_id=CAC30001.1;transl_table=11
AL450380.1	EMBL	sequence_feature	599101	599676	.	+	.	ID=id-ML0493;Note=Pfam match to entry PF00753 lactamase_B%2C Metallo-beta-lactamase superfamily%2C score 169.30%2C E-value 6.3e-47;gbkey=misc_feature;gene=ML0493
AL450380.1	EMBL	gene	599740	601023	.	+	.	ID=gene-hisS;Name=hisS;gbkey=Gene;gene=hisS;gene_biotype=protein_coding;gene_synonym=ML0494
AL450380.1	EMBL	CDS	599740	601023	.	+	0	ID=cds-CAC30002.1;Parent=gene-hisS;Dbxref=GOA:P46696,InterPro:IPR002314,InterPro:IPR004154,InterPro:IPR004516,InterPro:IPR006195,InterPro:IPR015807,NCBI_GP:CAC30002.1;Name=CAC30002.1;Note=Similar to M. tuberculosis hisS%2C Rv2580c%2C histidyl-tRNA synthase%2C SW:SYH_MYCTU (Q50641) (423 aa)%3B Fasta score E(): 0%2C 85.9%25 identity in 417 aa overlap. Similar to many e.g. Escherichia coli hisS%2C histidyl-tRNA synthase%2C SW:SYH_ECOLI (P04804) (423 aa)%3B Fasta score E(): 0%2C 42.1%25 identity in 413 aa overlap. Previously sequenced as SW:SYH_MYCLE (P46696) (427 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 427 aa overlap. Contains Pfam match to entry PF00587 tRNA-synt_2b%2C tRNA synthetase class II (G%2C H%2C P%2C S and T). Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00211 ABC transporters family signature.;gbkey=CDS;gene=hisS;product=histidyl-tRNA synthase;protein_id=CAC30002.1;transl_table=11
AL450380.1	EMBL	sequence_feature	599917	600966	.	+	.	ID=id-hisS;Note=Pfam match to entry PF00587 tRNA-synt_2b%2C tRNA synthetase class II (G%2C H%2C P%2C S and T)%2C score 292.60%2C E-value 5e-84;gbkey=misc_feature;gene=hisS
AL450380.1	EMBL	sequence_feature	600691	600714	.	+	.	ID=id-hisS-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=hisS
AL450380.1	EMBL	sequence_feature	600748	600792	.	+	.	ID=id-hisS-3;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=hisS
AL450380.1	EMBL	pseudogene	601152	601597	.	+	.	ID=gene-PE_PGRS-2;Name=PE_PGRS;gbkey=Gene;gene=PE_PGRS;gene_biotype=pseudogene;gene_synonym=ML0495;pseudo=true
AL450380.1	EMBL	CDS	601152	601597	.	+	0	ID=cds-PE_PGRS-2;Parent=gene-PE_PGRS-2;Note=Possible pseudogene similar to M. tuberculosis PE_PGRS genes (Best blastx score 176);gbkey=CDS;gene=PE_PGRS;product=PE_PGRS-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	601750	602325	.	+	.	ID=gene-ML0496;Name=ML0496;gbkey=Gene;gene=ML0496;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	601750	602325	.	+	0	ID=cds-ML0496;Parent=gene-ML0496;Note=Possible pseudogene of M. tuberculosis orthologue Rv2578c (Best blastx score 339);gbkey=CDS;gene=ML0496;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	602342	603849	.	-	.	ID=gene-ML0497;Name=ML0497;gbkey=Gene;gene=ML0497;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	602342	603849	.	-	0	ID=cds-ML0497;Parent=gene-ML0497;Note=Possible pseudogene of M. tuberculosis orthologue Rv2577 (Best blastx score 414);gbkey=CDS;gene=ML0497;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	604110	604425	.	+	.	ID=gene-ML0498;Name=ML0498;gbkey=Gene;gene=ML0498;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	604110	604425	.	+	0	ID=cds-ML0498;Parent=gene-ML0498;Note=Possible pseudogene of M. tuberculosis orthologue Rv2576c (Best blastx score 119);gbkey=CDS;gene=ML0498;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	605196	606015	.	-	.	ID=gene-ML0499;Name=ML0499;gbkey=Gene;gene=ML0499;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	605196	606015	.	-	0	ID=cds-ML0499;Parent=gene-ML0499;Note=Possible pseudogene of M. tuberculosis orthologue Rv2575 (Best blastx score 329);gbkey=CDS;gene=ML0499;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	606108	606592	.	-	.	ID=gene-ML0500;Name=ML0500;gbkey=Gene;gene=ML0500;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	606108	606592	.	-	0	ID=cds-ML0500;Parent=gene-ML0500;Note=Possible pseudogene of M. tuberculosis orthologue Rv2573 (Best blastx score 211);gbkey=CDS;gene=ML0500;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	606830	606833	.	+	.	ID=id-AL450380.1:606830..606833;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	606839	608608	.	+	.	ID=gene-aspS;Name=aspS;gbkey=Gene;gene=aspS;gene_biotype=protein_coding;gene_synonym=ML0501
AL450380.1	EMBL	CDS	606839	608608	.	+	0	ID=cds-CAC30009.1;Parent=gene-aspS;Dbxref=GOA:P36429,InterPro:IPR002312,InterPro:IPR004115,InterPro:IPR004364,InterPro:IPR004365,InterPro:IPR004524,InterPro:IPR006195,InterPro:IPR012340,InterPro:IPR018150,InterPro:IPR029351,NCBI_GP:CAC30009.1;Name=CAC30009.1;Note=Similar to M. tuberculosis aspS%2C Rv2572c%2C aspartyl-tRNA synthetase%2C SW:SYD_MYCTU (Q50649) (596 aa)%3B Fasta score E(): 0%2C 88.0%25 identity in 592 aa overlap. Similar to many e.g. Escherichia coli aspS%2C aspartyl-tRNA synthetase%2C SW:SYD_ECOLI (P21889) (590 aa)%3B Fasta score E(): 0%2C 46.8%25 identity in 583 aa overlap. Previously sequenced as SW:SYD_MYCLE (P36429) (589 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 589 aa overlap. Contains Pfam match to entry PF00152 tRNA-synt_2%2C tRNA synthetases class II (D%2C K and N). Contains PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.;gbkey=CDS;gene=aspS;product=aspartyl-tRNA synthetase;protein_id=CAC30009.1;transl_table=11
AL450380.1	EMBL	sequence_feature	607184	608515	.	+	.	ID=id-aspS;Note=Pfam match to entry PF00152 tRNA-synt_2%2C tRNA synthetases class II (D%2C K and N)%2C score -4.30%2C E-value 2.1e-11;gbkey=misc_feature;gene=aspS
AL450380.1	EMBL	sequence_feature	607481	607534	.	+	.	ID=id-aspS-2;Note=PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1;gbkey=misc_feature;gene=aspS
AL450380.1	EMBL	pseudogene	608647	609029	.	+	.	ID=gene-ML0502;Name=ML0502;gbkey=Gene;gene=ML0502;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	608647	609029	.	+	0	ID=cds-ML0502;Parent=gene-ML0502;Note=Possible pseudogene similar to M. tuberculosis Rv1558 (Best blastx score 72);gbkey=CDS;gene=ML0502;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	609984	610358	.	+	.	ID=gene-PPE-3;Name=PPE;gbkey=Gene;gene=PPE;gene_biotype=pseudogene;gene_synonym=ML0503;pseudo=true
AL450380.1	EMBL	CDS	609984	610358	.	+	0	ID=cds-PPE-3;Parent=gene-PPE-3;Note=Possible pseudogene similar to M. tuberculosis PPE genes (Best blastx score 98);gbkey=CDS;gene=PPE;product=PPE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	611087	612390	.	-	.	ID=gene-ML0504;Name=ML0504;gbkey=Gene;gene=ML0504;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	611087	612390	.	-	0	ID=cds-ML0504;Parent=gene-ML0504;Note=Possible pseudogene of transposase similar to Mycobacterium avium istA (Best blastx score 250);gbkey=CDS;gene=ML0504;product=transposase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	612560	613458	.	-	.	ID=gene-ML0505;Name=ML0505;gbkey=Gene;gene=ML0505;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	612560	613458	.	-	0	ID=cds-ML0505;Parent=gene-ML0505;Note=Possible pseudogene of M. tuberculosis orthologue Rv2424c (Best blastx score 206);gbkey=CDS;gene=ML0505;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	614636	614999	.	-	.	ID=gene-ML0506;Name=ML0506;gbkey=Gene;gene=ML0506;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	614636	614999	.	-	0	ID=cds-ML0506;Parent=gene-ML0506;Note=Possible pseudogene similar to M. tuberculosis Rv2570 (Best blastx score 169);gbkey=CDS;gene=ML0506;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	615180	617503	.	+	.	ID=gene-ML0507;Name=ML0507;gbkey=Gene;gene=ML0507;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	615180	617503	.	+	0	ID=cds-ML0507;Parent=gene-ML0507;Note=Possible pseudogene of M. tuberculosis orthologue Rv2567 (Best blastx score 542);gbkey=CDS;gene=ML0507;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	617501	618442	.	+	.	ID=gene-ML0508;Name=ML0508;gbkey=Gene;gene=ML0508;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	617501	618442	.	+	0	ID=cds-CAC30016.1;Parent=gene-ML0508;Dbxref=InterPro:IPR002931,InterPro:IPR013589,UniProtKB/TrEMBL:Q9CCT2,NCBI_GP:CAC30016.1;Name=CAC30016.1;Note=Similar to M. tuberculosis Rv2569c%2C conserved hypothetical protein%2C SW:YP69_MYCTU (Q50652) (314 aa)%3B Fasta score E(): 0%2C 84.4%25 identity in 301 aa overlap and to other hypothetical proteins from M. tuberculosis. Contains Pfam match to entry PF01841 Transglut_core%2C Transglutaminase-like superfamily.%3B~Similar to ML0607;gbkey=CDS;gene=ML0508;product=conserved hypothetical protein;protein_id=CAC30016.1;transl_table=11
AL450380.1	EMBL	sequence_feature	618068	618280	.	+	.	ID=id-ML0508;Note=Pfam match to entry PF01841 Transglut_core%2C Transglutaminase-like superfamily%2C score 80.40%2C E-value 3.6e-20;gbkey=misc_feature;gene=ML0508
AL450380.1	EMBL	pseudogene	618435	619450	.	+	.	ID=gene-ML0509;Name=ML0509;gbkey=Gene;gene=ML0509;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	618435	619450	.	+	0	ID=cds-ML0509;Parent=gene-ML0509;Note=Possible pseudogene of M. tuberculosis orthologue Rv2568c (Best blastx score 271);gbkey=CDS;gene=ML0509;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	619666	621087	.	+	.	ID=gene-ML0510;Name=ML0510;gbkey=Gene;gene=ML0510;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	619666	621087	.	+	0	ID=cds-CAC30018.1;Parent=gene-ML0510;Dbxref=GOA:Q9CCT1,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR008921,InterPro:IPR021886,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CCT1,NCBI_GP:CAC30018.1;Name=CAC30018.1;Note=Similar to M. tuberculosis Rv2559c%2C conserved hypothetical protein%2C SW:YP59_MYCT (Q50739) (452 aa)%3B Fasta score E(): 0%2C 83.4%25 identity in 452 aa overlapU. Similar to many hypothetical proteins in bacteria and eukaryotes e.g. Escherichia coli ycaJ%2C hypothetical protein%2C SW:YCAJ_ECOLI (P45526) (447 aa)%3B Fasta score E(): 0%2C 42.7%25 identity in 417 aa overlap. Previously sequenced as TR:O69490 (EMBL:AL023591) (447 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 447 aa overlap. Contains Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA). Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML0510;product=conserved hypothetical protein;protein_id=CAC30018.1;transl_table=11
AL450380.1	EMBL	sequence_feature	619930	620508	.	+	.	ID=id-ML0510;Note=Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%2C score -4.80%2C E-value 6.2e-05;gbkey=misc_feature;gene=ML0510
AL450380.1	EMBL	sequence_feature	619945	619968	.	+	.	ID=id-ML0510-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML0510
AL450380.1	EMBL	pseudogene	621128	621842	.	-	.	ID=gene-ML0511;Name=ML0511;gbkey=Gene;gene=ML0511;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	621128	621842	.	-	0	ID=cds-ML0511;Parent=gene-ML0511;Note=Possible pseudogene of M. tuberculosis orthologue Rv2558 (Best blastx score 199);gbkey=CDS;gene=ML0511;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	622159	624885	.	+	.	ID=gene-alaS;Name=alaS;gbkey=Gene;gene=alaS;gene_biotype=protein_coding;gene_synonym=ML0512
AL450380.1	EMBL	CDS	622159	624885	.	+	0	ID=cds-CAC30020.1;Parent=gene-alaS;Dbxref=GOA:Q9CCT0,InterPro:IPR002318,InterPro:IPR003156,InterPro:IPR009000,InterPro:IPR012947,InterPro:IPR018162,InterPro:IPR018163,InterPro:IPR018164,InterPro:IPR018165,InterPro:IPR023033,NCBI_GP:CAC30020.1;Name=CAC30020.1;Note=Similar to M. tuberculosis alaS%2C Rv2555c%2C alanyl-tRNA synthetase%2C SW:SYA_MYCTU (O07438) (904 aa)%3B Fasta score E(): 0%2C 84.7%25 identity in 907 aa overlap. Similar to many e.g. Homo sapiens aarS%2C alanyl-tRNA synthetase%2C SW:SYA_HUMAN (P49588) (968 aa)%3B Fasta score E(): 0%2C 35.7%25 identity in 971 aa overlap. Contains Pfam match to entry PF01411 tRNA-synt_2c%2C tRNA synthetases class II (A). Contains PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.;gbkey=CDS;gene=alaS;product=alanyl-tRNA synthetase;protein_id=CAC30020.1;transl_table=11
AL450380.1	EMBL	sequence_feature	622171	624849	.	+	.	ID=id-alaS;Note=Pfam match to entry PF01411 tRNA-synt_2c%2C tRNA synthetases class II (A)%2C score 993.10%2C E-value 6.5e-295;gbkey=misc_feature;gene=alaS
AL450380.1	EMBL	sequence_feature	622849	622878	.	+	.	ID=id-alaS-2;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2;gbkey=misc_feature;gene=alaS
AL450380.1	EMBL	gene	624886	625440	.	+	.	ID=gene-ML0513;Name=ML0513;gbkey=Gene;gene=ML0513;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	624886	625440	.	+	0	ID=cds-CAC30021.1;Parent=gene-ML0513;Dbxref=GOA:Q9CCS9,InterPro:IPR005227,InterPro:IPR006641,InterPro:IPR012337,NCBI_GP:CAC30021.1;Name=CAC30021.1;Note=Similar to M. tuberculosis Rv2554c%2C hypothetical protein%2C SW:YP54_MYCTU (P94999) (170 aa)%3B Fasta score E(): 0%2C 72.0%25 identity in 161 aa overlap. Similar to many bacterial hypothetical proteins e.g. Streptomyces coelicolor SC9C5.24C%2C hypothetical protein%2C TR:CAB93380 (EMBL:AL357523) (167 aa)%3B Fasta score E(): 8.9e-25%2C 54.8%25 identity in 155 aa overlap.;gbkey=CDS;gene=ML0513;product=conserved hypothetical protein;protein_id=CAC30021.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	625420	625423	.	+	.	ID=id-ML0513;Parent=gene-ML0513;Note=possible RBS;gbkey=regulatory;gene=ML0513;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	625433	626698	.	+	.	ID=gene-ML0514;Name=ML0514;gbkey=Gene;gene=ML0514;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	625433	626698	.	+	0	ID=cds-CAC30022.1;Parent=gene-ML0514;Dbxref=InterPro:IPR003770,UniProtKB/TrEMBL:Q9CCS8,NCBI_GP:CAC30022.1;Name=CAC30022.1;Note=Similar to M. tuberculosis Rv2553c%2C hypothetical protein%2C TR:P95000 (EMBL:AL123456) (417 aa)%3B Fasta score E(): 0%2C 72.7%25 identity in 414 aa overlap. C-terminal half is similar to e.g. Streptomyces sphaeroides novB%2C gene from novobiocin biosynthetic gene cluster%2C TR:AAF67495 (EMBL:AF170880) (284 aa)%3B Fasta score E(): 2.5e-22%2C 40.0%25 identity in 210 aa overlap. Shows full-length similarity to other hypothetical proteins e.g. Bacillus subtilis yrrL%2C hypothetical protein%2C TR:O34758 (EMBL:Z99117) (360 aa)%3B Fasta score E(): 2.8e-10%2C 26.3%25 identity in 358 aa overlap. Contains hydrophobic%2C possible membrane-spanning region near the N-terminus.;gbkey=CDS;gene=ML0514;product=putative membrane protein;protein_id=CAC30022.1;transl_table=11
AL450380.1	EMBL	gene	626676	627512	.	+	.	ID=gene-aroE;Name=aroE;gbkey=Gene;gene=aroE;gene_biotype=protein_coding;gene_synonym=ML0515
AL450380.1	EMBL	CDS	626676	627512	.	+	0	ID=cds-CAC30023.1;Parent=gene-aroE;Dbxref=GOA:Q9CCS7,InterPro:IPR010110,InterPro:IPR013708,InterPro:IPR016040,UniProtKB/TrEMBL:Q9CCS7,NCBI_GP:CAC30023.1;Name=CAC30023.1;Note=Similar to M. tuberculosis aroE%2C Rv2552c%2C shikimate 5-dehydrogenase%2C TR:P95001 (EMBL:AL123456) (269 aa)%3B Fasta score E(): 0%2C 81.5%25 identity in 270 aa overlap. Similar to many e.g. Neisseria meningitidis aroE%2C shikimate dehydrogenase%2C TR:P95388 (EMBL:U82841) (269 aa)%3B Fasta score E(): 2.5e-12%2C 29.6%25 identity in 274 aa overlap. Contains Pfam match to entry PF01488 Shikimate_DH%2C Shikimate / quinate 5-dehydrogenase.;gbkey=CDS;gene=aroE;product=putative shikimate 5-dehydrogenase;protein_id=CAC30023.1;transl_table=11
AL450380.1	EMBL	sequence_feature	626760	627464	.	+	.	ID=id-aroE;Note=Pfam match to entry PF01488 Shikimate_DH%2C Shikimate / quinate 5-dehydrogenase%2C score 229.00%2C E-value 6.9e-65;gbkey=misc_feature;gene=aroE
AL450380.1	EMBL	ribosome_entry_site	627730	627733	.	+	.	ID=id-AL450380.1:627730..627733;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	627741	628964	.	+	.	ID=gene-aroF;Name=aroF;gbkey=Gene;gene=aroF;gene_biotype=protein_coding;gene_synonym=ML0516
AL450380.1	EMBL	CDS	627741	628964	.	+	0	ID=cds-CAC30024.1;Parent=gene-aroF;Dbxref=GOA:Q9CCS6,InterPro:IPR000453,InterPro:IPR020541,NCBI_GP:CAC30024.1;Name=CAC30024.1;Note=Similar to M. tuberculosis aroF%2C Rv2540c%2C chorismate synthase%2C SW:AROC_MYCTU (P95013) (401 aa)%3B Fasta score E(): 0%2C 88.0%25 identity in 401 aa overlap. Similar to many e.g. Staphylococcus aureus aroC%2C chorismate synthase%2C SW:AROC_STAAU (Q59803) (388 aa)%3B Fasta score E(): 0%2C 43.1%25 identity in 383 aa overlap. Contains Pfam match to entry PF01264 Chorismate_synt%2C Chorismate synthase. Contains PS00788 Chorismate synthase signature 2. Contains PS00789 Chorismate synthase signature 3. Contains PS00787 Chorismate synthase signature 1.;gbkey=CDS;gene=aroF;product=putative chorismate synthase;protein_id=CAC30024.1;transl_table=11
AL450380.1	EMBL	sequence_feature	627744	628850	.	+	.	ID=id-aroF;Note=Pfam match to entry PF01264 Chorismate_synt%2C Chorismate synthase%2C score 695.80%2C E-value 8.2e-212;gbkey=misc_feature;gene=aroF
AL450380.1	EMBL	sequence_feature	627762	627809	.	+	.	ID=id-aroF-2;Note=PS00787 Chorismate synthase signature 1;gbkey=misc_feature;gene=aroF
AL450380.1	EMBL	sequence_feature	628140	628184	.	+	.	ID=id-aroF-3;Note=PS00788 Chorismate synthase signature 2;gbkey=misc_feature;gene=aroF
AL450380.1	EMBL	sequence_feature	628761	628811	.	+	.	ID=id-aroF-4;Note=PS00789 Chorismate synthase signature 3;gbkey=misc_feature;gene=aroF
AL450380.1	EMBL	gene	628972	629571	.	+	.	ID=gene-aroK;Name=aroK;gbkey=Gene;gene=aroK;gene_biotype=protein_coding;gene_synonym=ML0517
AL450380.1	EMBL	CDS	628972	629571	.	+	0	ID=cds-CAC30025.1;Parent=gene-aroK;Dbxref=GOA:Q9CCS5,InterPro:IPR000623,InterPro:IPR023000,InterPro:IPR027417,NCBI_GP:CAC30025.1;Name=CAC30025.1;Note=Similar to M. tuberculosis aroK%2C Rv2539c%2C shikimate kinase%2C SW:AROK_MYCTU (P95014) (176 aa)%3B Fasta score E(): 0%2C 79.6%25 identity in 167 aa overlap. Similar to many e.g. Escherichia coli aroK%2C shikimate kinase I%2C SW:AROK_ECOLI (P24167) (172 aa)%3B Fasta score E(): 3.5e-13%2C 38.0%25 identity in 166 aa overlap. Contains Pfam match to entry PF01202 SKI%2C Shikimate kinase. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS01128 Shikimate kinase signature.;gbkey=CDS;gene=aroK;product=putative shikimate kinase;protein_id=CAC30025.1;transl_table=11
AL450380.1	EMBL	sequence_feature	628978	629472	.	+	.	ID=id-aroK;Note=Pfam match to entry PF01202 SKI%2C Shikimate kinase%2C score 226.20%2C E-value 4.9e-64;gbkey=misc_feature;gene=aroK
AL450380.1	EMBL	sequence_feature	628996	629019	.	+	.	ID=id-aroK-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=aroK
AL450380.1	EMBL	sequence_feature	629143	629220	.	+	.	ID=id-aroK-3;Note=PS01128 Shikimate kinase signature;gbkey=misc_feature;gene=aroK
AL450380.1	EMBL	ribosome_entry_site	629557	629561	.	+	.	ID=id-aroK-4;Parent=gene-aroK;Note=possible RBS;gbkey=regulatory;gene=aroK;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	629568	630653	.	+	.	ID=gene-aroB;Name=aroB;gbkey=Gene;gene=aroB;gene_biotype=protein_coding;gene_synonym=ML0518
AL450380.1	EMBL	CDS	629568	630653	.	+	0	ID=cds-CAC30026.1;Parent=gene-aroB;Dbxref=GOA:Q9CCS4,InterPro:IPR016037,NCBI_GP:CAC30026.1;Name=CAC30026.1;Note=Similar to M. tuberculosis aroB%2C Rv2538c%2C 3-dehydroquinate synthase%2C SW:AROB_MYCTU (P36919) (362 aa)%3B Fasta score E(): 0%2C 87.3%25 identity in 361 aa overlap. Contains Pfam match to entry PF01761 DHQ_synthase%2C 3-dehydroquinate synthase.;gbkey=CDS;gene=aroB;product=putative 3-dehydroquinate synthase;protein_id=CAC30026.1;transl_table=11
AL450380.1	EMBL	sequence_feature	629628	630638	.	+	.	ID=id-aroB;Note=Pfam match to entry PF01761 DHQ_synthase%2C 3-dehydroquinate synthase%2C score 601.80%2C E-value 4.1e-177;gbkey=misc_feature;gene=aroB
AL450380.1	EMBL	gene	630653	631090	.	+	.	ID=gene-aroD;Name=aroD;gbkey=Gene;gene=aroD;gene_biotype=protein_coding;gene_synonym=ML0519
AL450380.1	EMBL	CDS	630653	631090	.	+	0	ID=cds-CAC30027.1;Parent=gene-aroD;Dbxref=GOA:Q9CCS3,InterPro:IPR001874,InterPro:IPR018509,NCBI_GP:CAC30027.1;Name=CAC30027.1;Note=Similar to M. tuberculosis aroD%2C 3-dehydroquinate dehydratase%2C SW:AROQ_MYCTU (P36918) (146 aa)%3B Fasta score E(): 0%2C 85.9%25 identity in 142 aa overlap. Similar to many e.g. Corynebacterium pseudotuberculosis aroQ%2C 3-dehydroquinate dehydratase%2C SW:AROQ_CORPS (P96750) (146 aa)%3B Fasta score E(): 6.7e-33%2C 61.0%25 identity in 136 aa overlap. Contains Pfam match to entry PF01220 DHquinase_II%2C Dehydroquinase class II. Contains PS01029 Dehydroquinase class II signature.;gbkey=CDS;gene=aroD;product=3-dehydroquinate dehydratase;protein_id=CAC30027.1;transl_table=11
AL450380.1	EMBL	sequence_feature	630656	631087	.	+	.	ID=id-aroD;Note=Pfam match to entry PF01220 DHquinase_II%2C Dehydroquinase class II%2C score 300.70%2C E-value 1.8e-86;gbkey=misc_feature;gene=aroD
AL450380.1	EMBL	sequence_feature	630671	630724	.	+	.	ID=id-aroD-2;Note=PS01029 Dehydroquinase class II signature;gbkey=misc_feature;gene=aroD
AL450380.1	EMBL	gene	631179	631787	.	-	.	ID=gene-ML0520;Name=ML0520;gbkey=Gene;gene=ML0520;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	631179	631787	.	-	0	ID=cds-CAC30028.1;Parent=gene-ML0520;Dbxref=UniProtKB/TrEMBL:Q9CCS2,NCBI_GP:CAC30028.1;Name=CAC30028.1;Note=Similar to M. tuberculosis Rv2536%2C possible membrane protein%2C TR:P95017 (EMBL:AL123456) (230 aa)%3B Fasta score E(): 0%2C 63.2%25 identity in 201 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site8.;gbkey=CDS;gene=ML0520;product=putative membrane protein;protein_id=CAC30028.1;transl_table=11
AL450380.1	EMBL	sequence_feature	631395	631427	.	-	.	ID=id-ML0520;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site8;gbkey=misc_feature;gene=ML0520
AL450380.1	EMBL	ribosome_entry_site	631792	631795	.	-	.	ID=id-AL450380.1:631792..631795;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	631821	632951	.	+	.	ID=gene-pepQ;Name=pepQ;gbkey=Gene;gene=pepQ;gene_biotype=protein_coding;gene_synonym=ML0521
AL450380.1	EMBL	CDS	631821	632951	.	+	0	ID=cds-CAC30029.1;Parent=gene-pepQ;Dbxref=GOA:Q9CCS1,InterPro:IPR000587,InterPro:IPR000994,InterPro:IPR001131,InterPro:IPR001714,InterPro:IPR028980,InterPro:IPR029149,UniProtKB/TrEMBL:Q9CCS1,NCBI_GP:CAC30029.1;Name=CAC30029.1;Note=Similar to M. tuberculosis pepQ%2C Rv2535c%2C putative cytoplasmic peptidase%2C TR:P95018 (EMBL:AL123456) (372 aa)%3B Fasta score E(): 0%2C 83.0%25 identity in 376 aa overlap. Similar to many e.g. Pyrococcus furiosus cobalt-dependent proline dipeptidase%2C TR:P81535 (EMBL:AF060010) (348 aa)%3B Fasta score E(): 1.6e-29%2C 33.7%25 identity in 359 aa overlap. Contains Pfam match to entry PF00557 Peptidase_M24%2C metallopeptidase family M24. Contains PS00491 Aminopeptidase P and proline dipeptidase signature. Contains PS00211 ABC transporters family signature.;gbkey=CDS;gene=pepQ;product=putative cytoplasmic peptidase;protein_id=CAC30029.1;transl_table=11
AL450380.1	EMBL	sequence_feature	632217	632906	.	+	.	ID=id-pepQ;Note=Pfam match to entry PF00557 Peptidase_M24%2C metallopeptidase family M24%2C score 200.70%2C E-value 2.3e-56;gbkey=misc_feature;gene=pepQ
AL450380.1	EMBL	sequence_feature	632454	632498	.	+	.	ID=id-pepQ-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=pepQ
AL450380.1	EMBL	sequence_feature	632694	632732	.	+	.	ID=id-pepQ-3;Note=PS00491 Aminopeptidase P and proline dipeptidase signature;gbkey=misc_feature;gene=pepQ
AL450380.1	EMBL	ribosome_entry_site	632950	632954	.	+	.	ID=id-AL450380.1:632950..632954;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	632967	633530	.	+	.	ID=gene-efp;Name=efp;gbkey=Gene;gene=efp;gene_biotype=protein_coding;gene_synonym=ML0522
AL450380.1	EMBL	CDS	632967	633530	.	+	0	ID=cds-CAC30030.1;Parent=gene-efp;Dbxref=GOA:Q9CCS0,InterPro:IPR001059,InterPro:IPR008991,InterPro:IPR011768,InterPro:IPR012340,InterPro:IPR013185,InterPro:IPR013852,InterPro:IPR014722,InterPro:IPR015365,InterPro:IPR020599,NCBI_GP:CAC30030.1;Name=CAC30030.1;Note=Similar to M. tuberculosis efp%2C Rv2534c%2C elongation factor P%2C SW:EFP_MYCTU (P95019) (187 aa)%3B Fasta score E(): 0%2C 94.1%25 identity in 186 aa overlap. Similar to many e.g. Brevibacterium lactofermentum efp%2C elongation factor P%2C SW:EFP_BRELA (X99289) (187 aa)%3B Fasta score E(): 0%2C 68.8%25 identity in 186 aa overlap. Contains Pfam match to entry PF01132 EFP%2C Elongation factor P (EF-P). Contains PS01275 Elongation factor P signature.;gbkey=CDS;gene=efp;product=elongation factor P;protein_id=CAC30030.1;transl_table=11
AL450380.1	EMBL	sequence_feature	632967	633521	.	+	.	ID=id-efp;Note=Pfam match to entry PF01132 EFP%2C Elongation factor P (EF-P)%2C score 438.40%2C E-value 6.2e-128;gbkey=misc_feature;gene=efp
AL450380.1	EMBL	sequence_feature	633414	633473	.	+	.	ID=id-efp-2;Note=PS01275 Elongation factor P signature;gbkey=misc_feature;gene=efp
AL450380.1	EMBL	gene	633533	634105	.	+	.	ID=gene-nusB;Name=nusB;gbkey=Gene;gene=nusB;gene_biotype=protein_coding;gene_synonym=ML0523
AL450380.1	EMBL	CDS	633533	634105	.	+	0	ID=cds-CAC30031.1;Parent=gene-nusB;Dbxref=GOA:Q9CCR9,InterPro:IPR006027,InterPro:IPR011605,NCBI_GP:CAC30031.1;Name=CAC30031.1;Note=Similar to M. tuberculosis nusB%2C putative transcription termination protein%2C SW:NUSB_MYCTU (P95020) (156 aa)%3B Fasta score E(): 0%2C 75.7%25 identity in 148 aa overlap. Similar to many e.g. Escherichia coli nusB%2C N utilization substance protein B%2C protein involved in regulation of transcription termination%2C SW:NUSB_ECOLI (P04381) (139 aa)%3B Fasta score E(): 7.4e-08%2C 38.1%25 identity in 139 aa overlap. Contains Pfam match to entry PF01029 NusB%2C NusB family.;gbkey=CDS;gene=nusB;product=putative transcription termination protein;protein_id=CAC30031.1;transl_table=11
AL450380.1	EMBL	sequence_feature	633551	633943	.	+	.	ID=id-nusB;Note=Pfam match to entry PF01029 NusB%2C NusB family%2C score 172.50%2C E-value 7.2e-48;gbkey=misc_feature;gene=nusB
AL450380.1	EMBL	ribosome_entry_site	634630	634636	.	+	.	ID=id-AL450380.1:634630..634636;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	634643	637495	.	+	.	ID=gene-adi;Name=adi;gbkey=Gene;gene=adi;gene_biotype=protein_coding;gene_synonym=ML0524
AL450380.1	EMBL	CDS	634643	637495	.	+	0	ID=cds-CAC30032.1;Parent=gene-adi;Dbxref=GOA:Q9CCR8,InterPro:IPR000310,InterPro:IPR008286,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q9CCR8,NCBI_GP:CAC30032.1;Name=CAC30032.1;Note=Similar to M. tuberculosis adi%2C Rv2531c%2C putative ornithine/arginine decarboxylase%2C TR:P95022 (EMBL:AL123456) (947 aa)%3B Fasta score E(): 0%2C 86.4%25 identity in 951 aa overlap. Similar to decarboxylases of ornithine and lysine e.g. Escherichia coli speC%2C ornithine decarboxylase%2C constitutive%2C SW:DCOR_ECOLI (P21169) (731 aa)%3B Fasta score E(): 3e-16%2C 26.8%25 identity in 650 aa overlap. Contains Pfam match to entry PF01276 OKR_DC_1%2C Orn/Lys/Arg decarboxylase.;gbkey=CDS;gene=adi;product=putative amino acid decarboxylase;protein_id=CAC30032.1;transl_table=11
AL450380.1	EMBL	sequence_feature	635513	637351	.	+	.	ID=id-adi;Note=Pfam match to entry PF01276 OKR_DC_1%2C Orn/Lys/Arg decarboxylase%2C score 169.50%2C E-value 5.4e-47;gbkey=misc_feature;gene=adi
AL450380.1	EMBL	gene	637492	637668	.	+	.	ID=gene-ML0525;Name=ML0525;gbkey=Gene;gene=ML0525;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	637492	637668	.	+	0	ID=cds-CAC30033.1;Parent=gene-ML0525;Dbxref=UniProtKB/TrEMBL:Q9CCR7,NCBI_GP:CAC30033.1;Name=CAC30033.1;Note=Unknown function. Similar to M. tuberculosis Rv2493%2C hypothetical protein%2C TR:O53218 (EMBL:AL123456) (73 aa)%3B Fasta score E(): 0.059%2C 47.7%25 identity in 44 aa overlap.;gbkey=CDS;gene=ML0525;product=conserved hypothetical protein;protein_id=CAC30033.1;transl_table=11
AL450380.1	EMBL	pseudogene	638094	638979	.	-	.	ID=gene-ML0526;Name=ML0526;gbkey=Gene;gene=ML0526;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	638094	638979	.	-	0	ID=cds-ML0526;Parent=gene-ML0526;Note=Possible pseudogene similar to M. tuberculosis Rv0575c (Best blastx score 73);gbkey=CDS;gene=ML0526;product=possible oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	639678	639932	.	-	.	ID=gene-ML0527;Name=ML0527;gbkey=Gene;gene=ML0527;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	639678	639932	.	-	0	ID=cds-CAC30035.1;Parent=gene-ML0527;Dbxref=UniProtKB/TrEMBL:Q9CCR6,NCBI_GP:CAC30035.1;Name=CAC30035.1;Note=Unknown function.;gbkey=CDS;gene=ML0527;product=hypothetical protein;protein_id=CAC30035.1;transl_table=11
AL450380.1	EMBL	pseudogene	641810	642795	.	-	.	ID=gene-ML0528;Name=ML0528;gbkey=Gene;gene=ML0528;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	641810	642795	.	-	0	ID=cds-ML0528;Parent=gene-ML0528;Note=Possible pseudogene of M. tuberculosis orthologue Rv1367c (Best blastx score 289);gbkey=CDS;gene=ML0528;product=probable penicillin binding protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	642925	643496	.	-	.	ID=gene-ML0529;Name=ML0529;gbkey=Gene;gene=ML0529;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	642925	643496	.	-	0	ID=cds-ML0529;Parent=gene-ML0529;Note=Possible pseudogene of M. tuberculosis orthologue Rv1377c (Best blastx score 217);gbkey=CDS;gene=ML0529;product=some similarity to methyltransferases (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	643652	645020	.	-	.	ID=gene-ML0530;Name=ML0530;gbkey=Gene;gene=ML0530;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	643652	645020	.	-	0	ID=cds-ML0530;Parent=gene-ML0530;Note=Possible pseudogene of M. tuberculosis orthologue Rv1378c (Best blastx score 627);gbkey=CDS;gene=ML0530;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	645041	645572	.	+	.	ID=gene-pyrR;Name=pyrR;gbkey=Gene;gene=pyrR;gene_biotype=pseudogene;gene_synonym=ML0531;pseudo=true
AL450380.1	EMBL	CDS	645041	645572	.	+	0	ID=cds-pyrR;Parent=gene-pyrR;Note=Possible pseudogene of M. tuberculosis orthologue pyrR (Best blastx score 355);gbkey=CDS;gene=pyrR;product=regulatory protein pyrimidine biosynthesis (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	645581	646546	.	+	.	ID=gene-pyrB;Name=pyrB;gbkey=Gene;gene=pyrB;gene_biotype=protein_coding;gene_synonym=ML0532
AL450380.1	EMBL	CDS	645581	646546	.	+	0	ID=cds-CAC30040.1;Parent=gene-pyrB;Dbxref=GOA:Q9CCR5,InterPro:IPR002082,InterPro:IPR006130,InterPro:IPR006131,InterPro:IPR006132,NCBI_GP:CAC30040.1;Name=CAC30040.1;Note=Similar to M. tuberculosis pyrB%2C Rv1380%2C aspartate carbamoyltransferase%2C SW:PYRB_MYCTU (P71808) (319 aa)%3B Fasta score E(): 0%2C 89.9%25 identity in 318 aa overlap. Similar to many e.g. Pseudomonas putida%2C aspartate carbamoyltransferase%2C SW:PYRB_PSEPU (Q59711) (334 aa)%3B Fasta score E(): 0%2C 47.3%25 identity in 317 aa overlap. Contains 2 Pfam matches to entry PF00185 OTCace%2C Aspartate/ornithine carbamoyltransferase. Contains PS00097 Aspartate and ornithine carbamoyltransferases signature.%3B~Shows weak similarity to ML1410;gbkey=CDS;gene=pyrB;product=putative aspartate carbamoyltransferase;protein_id=CAC30040.1;transl_table=11
AL450380.1	EMBL	sequence_feature	645590	646183	.	+	.	ID=id-pyrB;Note=Pfam match to entry PF00185 OTCace%2C Aspartate/ornithine carbamoyltransferase%2C score 173.40%2C E-value 3.7e-48;gbkey=misc_feature;gene=pyrB
AL450380.1	EMBL	sequence_feature	645731	645754	.	+	.	ID=id-pyrB-2;Note=PS00097 Aspartate and ornithine carbamoyltransferases signature;gbkey=misc_feature;gene=pyrB
AL450380.1	EMBL	sequence_feature	646328	646507	.	+	.	ID=id-pyrB-3;Note=Pfam match to entry PF00185 OTCace%2C Aspartate/ornithine carbamoyltransferase%2C score 31.40%2C E-value 8.4e-08;gbkey=misc_feature;gene=pyrB
AL450380.1	EMBL	ribosome_entry_site	646530	646535	.	+	.	ID=id-pyrB-4;Parent=gene-pyrB;Note=possible RBS;gbkey=regulatory;gene=pyrB;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	646543	647835	.	+	.	ID=gene-pyrC;Name=pyrC;gbkey=Gene;gene=pyrC;gene_biotype=protein_coding;gene_synonym=ML0533
AL450380.1	EMBL	CDS	646543	647835	.	+	0	ID=cds-CAC30041.1;Parent=gene-pyrC;Dbxref=GOA:Q9CCR4,InterPro:IPR004722,InterPro:IPR011059,NCBI_GP:CAC30041.1;Name=CAC30041.1;Note=Similar to M. tuberculosis pyrC%2C Rv1381%2C dihydroorotase%2C TR:P71809 (EMBL:AL123456) (430 aa)%3B Fasta score E(): 0%2C 88.8%25 identity in 427 aa overlap. Similar to many e.g. Bacillus caldolyticus pyrC%2C dihydroorotase%2C SW:PYRC_BACCL (P46538) (427 aa)%3B Fasta score E(): 0%2C 40.0%25 identity in 407 aa overlap. Contains Pfam match to entry PF00744 Dihydrooratase%2C Dihydroorotase-like.;gbkey=CDS;gene=pyrC;product=putative dihydroorotase;protein_id=CAC30041.1;transl_table=11
AL450380.1	EMBL	sequence_feature	646660	647808	.	+	.	ID=id-pyrC;Note=Pfam match to entry PF00744 Dihydrooratase%2C Dihydroorotase-like%2C score 266.90%2C E-value 2.7e-76;gbkey=misc_feature;gene=pyrC
AL450380.1	EMBL	pseudogene	647832	648321	.	+	.	ID=gene-ML0534;Name=ML0534;gbkey=Gene;gene=ML0534;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	647832	648321	.	+	0	ID=cds-ML0534;Parent=gene-ML0534;Note=Possible pseudogene of M. tuberculosis orthologue Rv1382 (Best blastx score 331);gbkey=CDS;gene=ML0534;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	648407	648413	.	+	.	ID=id-AL450380.1:648407..648413;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	648422	649549	.	+	.	ID=gene-carA;Name=carA;gbkey=Gene;gene=carA;gene_biotype=protein_coding;gene_synonym=ML0535
AL450380.1	EMBL	CDS	648422	649549	.	+	0	ID=cds-CAC30043.1;Parent=gene-carA;Dbxref=GOA:Q9CCR3,InterPro:IPR002474,InterPro:IPR006274,InterPro:IPR017926,InterPro:IPR029062,NCBI_GP:CAC30043.1;Name=CAC30043.1;Note=Similar to M. tuberculosis carA%2C Rv1383%2C carbamoyl-phosphate synthase subunit%2C TR:P71811 (EMBL:AL123456) (376 aa)%3B Fasta score E(): 0%2C 85.4%25 identity in 377 aa overlap. Similar to many e.g. Escherichia coli carA%2C carbamoyl-phosphate synthase subunit%2C SW:CARA_ECOLI (P00907) (382 aa)%3B Fasta score E(): 0%2C 43.2%25 identity in 389 aa overlap. Contains Pfam match to entry PF00988 CPSase_sm_chain%2C Carbamoyl-phosphate synthase small chain%2C CPSase domain. Contains Pfam match to entry PF00117 GATase%2C Glutamine amidotransferase class-I. Contains PS00442 Glutamine amidotransferases class-I active site.;gbkey=CDS;gene=carA;product=putative carbamoyl-phosphate synthase subunit;protein_id=CAC30043.1;transl_table=11
AL450380.1	EMBL	sequence_feature	648431	648928	.	+	.	ID=id-carA;Note=Pfam match to entry PF00988 CPSase_sm_chain%2C Carbamoyl-phosphate synthase small chain%2C CPSase domain%2C score 282.20%2C E-value 6.7e-81;gbkey=misc_feature;gene=carA
AL450380.1	EMBL	sequence_feature	648977	649531	.	+	.	ID=id-carA-2;Note=Pfam match to entry PF00117 GATase%2C Glutamine amidotransferase class-I%2C score 185.60%2C E-value 7.8e-52;gbkey=misc_feature;gene=carA
AL450380.1	EMBL	sequence_feature	649184	649219	.	+	.	ID=id-carA-3;Note=PS00442 Glutamine amidotransferases class-I active site;gbkey=misc_feature;gene=carA
AL450380.1	EMBL	ribosome_entry_site	649596	649603	.	+	.	ID=id-AL450380.1:649596..649603;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	649608	652997	.	+	.	ID=gene-carB;Name=carB;gbkey=Gene;gene=carB;gene_biotype=protein_coding;gene_synonym=ML0536
AL450380.1	EMBL	CDS	649608	652997	.	+	0	ID=cds-CAC30044.1;Parent=gene-carB;Dbxref=GOA:Q9CCR2,InterPro:IPR005479,InterPro:IPR005480,InterPro:IPR005481,InterPro:IPR005483,InterPro:IPR006275,InterPro:IPR011607,InterPro:IPR011761,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,NCBI_GP:CAC30044.1;Name=CAC30044.1;Note=Similar to M. tuberculosis carB%2C Rv1384%2C carbamoyl-phosphate synthase subunit. Similar to many e.g. Escherichia coli carB%2C carbamoyl-phosphate synthase subunit%2C SW:CARB_ECOLI (P00968) (1072 aa)%3B Fasta score E(): 0%2C 51.4%25 identity in 1116 aa overlap. Contains 2 Pfam matches to entry PF00289 CPSase_L_chain%2C Carbamoyl-phosphate synthase (CPSase). Contains 2 x PS00867 Carbamoyl-phosphate synthase subdomain signature 2. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Contains PS00866 Carbamoyl-phosphate synthase subdomain signature 1.;gbkey=CDS;gene=carB;product=putative carbamoyl-phosphate synthase subunit;protein_id=CAC30044.1;transl_table=11
AL450380.1	EMBL	sequence_feature	649656	650864	.	+	.	ID=id-carB;Note=Pfam match to entry PF00289 CPSase_L_chain%2C Carbamoyl-phosphate synthase (CPSase)%2C score 551.50%2C E-value 5.7e-162;gbkey=misc_feature;gene=carB
AL450380.1	EMBL	sequence_feature	649671	649703	.	+	.	ID=id-carB-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=carB
AL450380.1	EMBL	sequence_feature	650535	650558	.	+	.	ID=id-carB-3;Note=PS00867 Carbamoyl-phosphate synthase subdomain signature 2;gbkey=misc_feature;gene=carB
AL450380.1	EMBL	sequence_feature	651330	652307	.	+	.	ID=id-carB-4;Note=Pfam match to entry PF00289 CPSase_L_chain%2C Carbamoyl-phosphate synthase (CPSase)%2C score 188.30%2C E-value 5.9e-53;gbkey=misc_feature;gene=carB
AL450380.1	EMBL	sequence_feature	651801	651845	.	+	.	ID=id-carB-5;Note=PS00866 Carbamoyl-phosphate synthase subdomain signature 1;gbkey=misc_feature;gene=carB
AL450380.1	EMBL	sequence_feature	652188	652211	.	+	.	ID=id-carB-6;Note=PS00867 Carbamoyl-phosphate synthase subdomain signature 2;gbkey=misc_feature;gene=carB
AL450380.1	EMBL	ribosome_entry_site	652986	652990	.	+	.	ID=id-carB-7;Parent=gene-carB;Note=possible RBS;gbkey=regulatory;gene=carB;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	652994	653842	.	+	.	ID=gene-pyrF;Name=pyrF;gbkey=Gene;gene=pyrF;gene_biotype=protein_coding;gene_synonym=ML0537
AL450380.1	EMBL	CDS	652994	653842	.	+	0	ID=cds-CAC30045.1;Parent=gene-pyrF;Dbxref=GOA:Q9CCR1,InterPro:IPR001754,InterPro:IPR011060,InterPro:IPR011995,InterPro:IPR013785,InterPro:IPR018089,NCBI_GP:CAC30045.1;Name=CAC30045.1;Note=Similar to M. tuberculosis pyrF%2C Rv1385%2C orotidine 5'-phosphate decarboxylase%2C SW:DCOP_MYCTU (P77898) (274 aa)%3B Fasta score E(): 0%2C 77.3%25 identity in 282 aa overlap. Similar to many e.g. Mycobacterium smegmatis pyrF%2C orotidine 5'-phosphate decarboxylase%2C SW:DCOP_MYCSM (O08323) (276 aa)%3B Fasta score E(): 0%2C 72.5%25 identity in 280 aa overlap. Contains Pfam match to entry PF00215 OMPdecase%2C Orotidine 5'-phosphate decarboxylases. Contains PS00156 Orotidine 5'-phosphate decarboxylase active site.;gbkey=CDS;gene=pyrF;product=orotidine 5'-phosphate decarboxylase;protein_id=CAC30045.1;transl_table=11
AL450380.1	EMBL	sequence_feature	653003	653839	.	+	.	ID=id-pyrF;Note=Pfam match to entry PF00215 OMPdecase%2C Orotidine 5'-phosphate decarboxylases%2C score 188.80%2C E-value 9.5e-54;gbkey=misc_feature;gene=pyrF
AL450380.1	EMBL	sequence_feature	653261	653302	.	+	.	ID=id-pyrF-2;Note=PS00156 Orotidine 5'-phosphate decarboxylase active site;gbkey=misc_feature;gene=pyrF
AL450380.1	EMBL	ribosome_entry_site	654117	654120	.	+	.	ID=id-AL450380.1:654117..654120;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	654129	654437	.	+	.	ID=gene-PE-3;Name=PE;gbkey=Gene;gene=PE;gene_biotype=protein_coding;gene_synonym=ML0538
AL450380.1	EMBL	CDS	654129	654437	.	+	0	ID=cds-CAC30046.1;Parent=gene-PE-3;Dbxref=InterPro:IPR000084,UniProtKB/TrEMBL:Q9CCR0,NCBI_GP:CAC30046.1;Name=CAC30046.1;Note=Similar to M. tuberculosis PE%2C Rv1386%2C PE-family protein%2C SW:YD86_MYCTU (P71656) (102 aa)%3B Fasta score E(): 2.8e-25%2C 72.5%25 identity in 102 aa overlap.%3B~Similar to ML452%2C ML1183 and ML2129;gbkey=CDS;gene=PE;product=PE-family protein;protein_id=CAC30046.1;transl_table=11
AL450380.1	EMBL	gene	654434	656050	.	+	.	ID=gene-PPE-4;Name=PPE;gbkey=Gene;gene=PPE;gene_biotype=protein_coding;gene_synonym=ML0539
AL450380.1	EMBL	CDS	654434	656050	.	+	0	ID=cds-CAC30047.1;Parent=gene-PPE-4;Dbxref=InterPro:IPR000030,UniProtKB/TrEMBL:Q9CCQ9,NCBI_GP:CAC30047.1;Name=CAC30047.1;Note=Similar to M. tuberculosis PPE%2C Rv1387%2C PPE-family protein%2C TR:P71657 (EMBL:AL123456) (539 aa)%3B Fasta score E(): 0%2C 69.5%25 identity in 544 aa overlap. Contains Pfam match to entry PF00823 PPE%2C PPE family.%3B~Similar to ML0411%2C ML1182%2C ML1828 and ML1991;gbkey=CDS;gene=PPE;product=PPE-family protein;protein_id=CAC30047.1;transl_table=11
AL450380.1	EMBL	sequence_feature	654452	654928	.	+	.	ID=id-PPE;Note=Pfam match to entry PF00823 PPE%2C PPE family%2C score 202.80%2C E-value 5.3e-57;gbkey=misc_feature;gene=PPE
AL450380.1	EMBL	ribosome_entry_site	656886	656890	.	+	.	ID=id-AL450380.1:656886..656890;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	656895	657212	.	+	.	ID=gene-mihF;Name=mihF;gbkey=Gene;gene=mihF;gene_biotype=protein_coding;gene_synonym=ML0540
AL450380.1	EMBL	CDS	656895	657212	.	+	0	ID=cds-CAC30048.1;Parent=gene-mihF;Dbxref=GOA:Q9CCQ8,InterPro:IPR010979,UniProtKB/TrEMBL:Q9CCQ8,NCBI_GP:CAC30048.1;Name=CAC30048.1;Note=Similar to M. tuberculosis mihF%2C Rv1388%2C possible integration host factor%2C TR:P71658 (EMBL:AL123456) (190 aa)%3B Fasta score E(): 0%2C 98.1%25 identity in 105 aa overlap. Similar to Mycobacterium smegmatis mihF%2C integration host factor%2C TR:P96802 (EMBL:U75344) (105 aa)%3B Fasta score E(): 7.5e-32%2C 94.1%25 identity in 102 aa overlap.;gbkey=CDS;gene=mihF;product=putative integration host factor;protein_id=CAC30048.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	657248	657252	.	+	.	ID=id-AL450380.1:657248..657252;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	657266	657898	.	+	.	ID=gene-gmk;Name=gmk;gbkey=Gene;gene=gmk;gene_biotype=protein_coding;gene_synonym=ML0541
AL450380.1	EMBL	CDS	657266	657898	.	+	0	ID=cds-CAC30049.1;Parent=gene-gmk;Dbxref=GOA:Q9CCQ7,InterPro:IPR008144,InterPro:IPR008145,InterPro:IPR017665,InterPro:IPR020590,InterPro:IPR027417,NCBI_GP:CAC30049.1;Name=CAC30049.1;Note=Similar to M. tuberculosis gmk%2C Rv1389%2C putative guanylate kinase%2C SW:KGUA_MYCTU (P71659) (208 aa)%3B Fasta score E(): 0%2C 79.1%25 identity in 201 aa overlap. Similar to many e.g. Saccharomyces cerevisiae guk1%2C guanylate kinase%2C SW:KGUA_YEAST (P15454) (186 aa)%3B Fasta score E(): 7.1e-22%2C 42.8%25 identity in 180 aa overlap. Contains Pfam match to entry PF00625 Guanylate_kin%2C Guanylate kinase. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00856 Guanylate kinase signature.;gbkey=CDS;gene=gmk;product=putative guanylate kinase;protein_id=CAC30049.1;transl_table=11
AL450380.1	EMBL	sequence_feature	657353	657376	.	+	.	ID=id-gmk;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=gmk
AL450380.1	EMBL	sequence_feature	657434	657487	.	+	.	ID=id-gmk-2;Note=PS00856 Guanylate kinase signature;gbkey=misc_feature;gene=gmk
AL450380.1	EMBL	sequence_feature	657437	657757	.	+	.	ID=id-gmk-3;Note=Pfam match to entry PF00625 Guanylate_kin%2C Guanylate kinase%2C score 104.00%2C E-value 3e-27;gbkey=misc_feature;gene=gmk
AL450380.1	EMBL	ribosome_entry_site	657965	657971	.	+	.	ID=id-AL450380.1:657965..657971;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	657980	658312	.	+	.	ID=gene-ML0542;Name=ML0542;gbkey=Gene;gene=ML0542;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	657980	658312	.	+	0	ID=cds-CAC30050.1;Parent=gene-ML0542;Dbxref=GOA:Q9CCQ6,InterPro:IPR003716,InterPro:IPR006110,InterPro:IPR012293,NCBI_GP:CAC30050.1;Name=CAC30050.1;Note=Similar to M. tuberculosis Rv1390%2C conserved hypothetical protein%2C SW:YD90_MYCTU (P71660) (110 aa)%3B Fasta score E(): 0%2C 90.0%25 identity in 110 aa overlap. Also similar to Streptomyces coelicolor SC9C5.02C%2C hypothetical protein%2C TR:CAB93358 (EMBL:AL357523) (90 aa)%3B Fasta score E(): 2e-18%2C 71.3%25 identity in 80 aa overlap.;gbkey=CDS;gene=ML0542;product=conserved hypothetical protein;protein_id=CAC30050.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	658326	658332	.	+	.	ID=id-AL450380.1:658326..658332;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	658333	659592	.	+	.	ID=gene-dfp;Name=dfp;gbkey=Gene;gene=dfp;gene_biotype=protein_coding;gene_synonym=ML0543
AL450380.1	EMBL	CDS	658333	659592	.	+	0	ID=cds-CAC30051.1;Parent=gene-dfp;Dbxref=GOA:Q9CCQ5,InterPro:IPR003382,InterPro:IPR005252,InterPro:IPR007085,UniProtKB/TrEMBL:Q9CCQ5,NCBI_GP:CAC30051.1;Name=CAC30051.1;Note=Similar to M. tuberculosis dfp%2C Rv1391%2C putative flavoprotein%2C SW:DFP_MYCTU (P71661) (418 aa)%3B Fasta score E(): 0%2C 87.0%25 identity in 409 aa overlap. Similar to many e.g. Escherichia coli dfp%2C DNA/pantothenate metabolism flavoprotein%2C SW:DFP_ECOLI (P24285) (430 aa)%3B Fasta score E(): 0%2C 39.7%25 identity in 408 aa overlap.;gbkey=CDS;gene=dfp;product=putative flavoprotein;protein_id=CAC30051.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	659704	659709	.	+	.	ID=id-AL450380.1:659704..659709;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	659721	660932	.	+	.	ID=gene-metK;Name=metK;gbkey=Gene;gene=metK;gene_biotype=protein_coding;gene_synonym=ML0544
AL450380.1	EMBL	CDS	659721	660932	.	+	0	ID=cds-CAC30052.1;Parent=gene-metK;Dbxref=GOA:Q9CCQ4,InterPro:IPR002133,InterPro:IPR022628,InterPro:IPR022629,InterPro:IPR022630,InterPro:IPR022631,InterPro:IPR022636,NCBI_GP:CAC30052.1;Name=CAC30052.1;Note=Similar to M. tuberculosis metK%2C Rv1392%2C putative S-adenosylmethionine synthase%2C SW:METK_MYCTU (P77899) (403 aa)%3B Fasta score E(): 0%2C 91.3%25 identity in 403 aa overlap. Similar to Streptomyces spectabilis metK%2C S-adenosylmethionine synthase%2C SW:METK_STRST (Q9X4Q2) (411 aa)%3B Fasta score E(): 0%2C 73.6%25 identity in 398 aa overlap. Contains Pfam match to entry PF00438 S-AdoMet_synt%2C S-adenosylmethionine synthetase. Contains PS00377 S-adenosylmethionine synthetase signature 2. Contains PS00376 S-adenosylmethionine synthetase signature 1.;gbkey=CDS;gene=metK;product=putative S-adenosylmethionine synthase;protein_id=CAC30052.1;transl_table=11
AL450380.1	EMBL	sequence_feature	659736	660893	.	+	.	ID=id-metK;Note=Pfam match to entry PF00438 S-AdoMet_synt%2C S-adenosylmethionine synthetase%2C score 693.20%2C E-value 3.2e-287;gbkey=misc_feature;gene=metK
AL450380.1	EMBL	sequence_feature	660111	660143	.	+	.	ID=id-metK-2;Note=PS00376 S-adenosylmethionine synthetase signature 1;gbkey=misc_feature;gene=metK
AL450380.1	EMBL	sequence_feature	660555	660581	.	+	.	ID=id-metK-3;Note=PS00377 S-adenosylmethionine synthetase signature 2;gbkey=misc_feature;gene=metK
AL450380.1	EMBL	pseudogene	661595	662509	.	-	.	ID=gene-lipH;Name=lipH;gbkey=Gene;gene=lipH;gene_biotype=pseudogene;gene_synonym=ML0545;pseudo=true
AL450380.1	EMBL	CDS	661595	662509	.	-	0	ID=cds-lipH;Parent=gene-lipH;Note=Possible pseudogene of M. tuberculosis orthologue lipH (Best blastx score 213);gbkey=CDS;gene=lipH;product=probable lipase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	662674	663497	.	-	.	ID=gene-lipI;Name=lipI;gbkey=Gene;gene=lipI;gene_biotype=pseudogene;gene_synonym=ML0546;pseudo=true
AL450380.1	EMBL	CDS	662674	663497	.	-	0	ID=cds-lipI;Parent=gene-lipI;Note=Possible pseudogene of M. tuberculosis orthologue lipI (Best blastx score 262);gbkey=CDS;gene=lipI;product=probable lipase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	663496	663987	.	+	.	ID=gene-ML0547;Name=ML0547;gbkey=Gene;gene=ML0547;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	663496	663987	.	+	0	ID=cds-ML0547;Parent=gene-ML0547;Note=Possible pseudogene of M. tuberculosis orthologue Rv1401 (Best blastx score 114);gbkey=CDS;gene=ML0547;product=possible membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	664260	666215	.	+	.	ID=gene-priA;Name=priA;gbkey=Gene;gene=priA;gene_biotype=protein_coding;gene_synonym=ML0548
AL450380.1	EMBL	CDS	664260	666215	.	+	0	ID=cds-CAC30056.1;Parent=gene-priA;Dbxref=GOA:Q9CCQ3,NCBI_GP:CAC30056.1;Name=CAC30056.1;Note=Similar to M. tuberculosis priA%2C Rv1402%2C putative primosomal protein N'%2C SW:PRIA_MYCTU (P71670) (655 aa)%3B Fasta score E(): 0%2C 80.7%25 identity in 658 aa overlap. Similar to many e.g. Escherichia coli priA%2C primosomal protein N'%2C SW:PRIA_ECOLI (P17888) (732 aa)%3B Fasta score E(): 1.2e-16%2C 28.1%25 identity in 445 aa overlap.;gbkey=CDS;gene=priA;product=putative primosomal protein N';protein_id=CAC30056.1;transl_table=11
AL450380.1	EMBL	pseudogene	666224	667066	.	-	.	ID=gene-ML0549;Name=ML0549;gbkey=Gene;gene=ML0549;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	666224	667066	.	-	0	ID=cds-ML0549;Parent=gene-ML0549;Note=Possible pseudogene of M. tuberculosis orthologue Rv1403c (Best blastx score 822);gbkey=CDS;gene=ML0549;product=similar to phosphatidylethanolamine N-methyltransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	667331	667816	.	+	.	ID=gene-ML0550;Name=ML0550;gbkey=Gene;gene=ML0550;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	667331	667816	.	+	0	ID=cds-CAC30058.1;Parent=gene-ML0550;Dbxref=GOA:Q9CCQ2,InterPro:IPR000835,InterPro:IPR011991,UniProtKB/TrEMBL:Q9CCQ2,NCBI_GP:CAC30058.1;Name=CAC30058.1;Note=Similar to M. tuberculosis Rv1404%2C putative marR-family transcriptional regulator%2C TR:P71672 (EMBL:AL123456) (160 aa)%3B Fasta score E(): 0%2C 79.1%25 identity in 158 aa overlap. Shows weak similarity to marR family e.g. Salmonella typhimurium marR%2C multiple antibiotic resistance protein%2C SW:MARR_SALTY (Q56069) (144 aa)%3B Fasta score E(): 0.0027%2C 29.2%25 identity in 106 aa overlap. Contains Pfam match to entry PF01047 MarR%2C MarR family.;gbkey=CDS;gene=ML0550;product=putative marR-family transcriptional regulator;protein_id=CAC30058.1;transl_table=11
AL450380.1	EMBL	sequence_feature	667454	667765	.	+	.	ID=id-ML0550;Note=Pfam match to entry PF01047 MarR%2C MarR family%2C score 99.80%2C E-value 5.2e-26;gbkey=misc_feature;gene=ML0550
AL450380.1	EMBL	gene	667998	668822	.	-	.	ID=gene-ML0551;Name=ML0551;gbkey=Gene;gene=ML0551;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	667998	668822	.	-	0	ID=cds-CAC30059.1;Parent=gene-ML0551;Dbxref=GOA:Q9CCQ1,InterPro:IPR013216,InterPro:IPR029063,UniProtKB/TrEMBL:Q9CCQ1,NCBI_GP:CAC30059.1;Name=CAC30059.1;Note=Similar to M. tuberculosis Rv1405c%2C hypothetical protein%2C SW:YE05_MYCTU (P71673) (274 aa)%3B Fasta score E(): 0%2C 78.0%25 identity in 273 aa overlap. Shows weak similarity to methyltransferses e.g. Rhodobacter sphaeroides pmtA%2C phosphatidylethanolamine N-methyltransferase%2C SW:PMTA_RHOSH (Q05197) (203 aa)%3B Fasta score E(): 7.9e-08%2C 31.3%25 identity in 144 aa overlap and Escherichia coli ubiE%2C ubiquinone/menaquinone biosynthesis methyltransferase%2C SW:UBIE_ECOLI (P27851) (251 aa)%3B Fasta score E(): 9.1e-06%2C 28.0%25 identity in 118 aa overlap.;gbkey=CDS;gene=ML0551;product=putative methyltransferase;protein_id=CAC30059.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	668828	668832	.	-	.	ID=id-AL450380.1:668828..668832;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	ribosome_entry_site	668985	668988	.	+	.	ID=id-AL450380.1:668985..668988;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	669003	669959	.	+	.	ID=gene-fmt;Name=fmt;gbkey=Gene;gene=fmt;gene_biotype=protein_coding;gene_synonym=ML0552
AL450380.1	EMBL	CDS	669003	669959	.	+	0	ID=cds-CAC30060.1;Parent=gene-fmt;Dbxref=GOA:Q9CCQ0,InterPro:IPR002376,InterPro:IPR005793,InterPro:IPR005794,InterPro:IPR011034,InterPro:IPR015518,NCBI_GP:CAC30060.1;Name=CAC30060.1;Note=Similar to M. tuberculosis fmt%2C Rv1406%2C putative methionyl-tRNA formyltransferase%2C SW:FMT_MYCTU (P71674) (312 aa)%3B Fasta score E(): 0%2C 81.0%25 identity in 316 aa overlap. Similar to many e.g. Thermus aquaticus fmt%2C methionyl-tRNA formyltransferase%2C SW:FMT_THETH (P43523) (305 aa)%3B Fasta score E(): 8.1e-31%2C 41.3%25 identity in 315 aa overlap. Contains Pfam match to entry PF00551 formyl_transf%2C Formyl transferase.;gbkey=CDS;gene=fmt;product=putative methionyl-tRNA formyltransferase;protein_id=CAC30060.1;transl_table=11
AL450380.1	EMBL	sequence_feature	669009	669551	.	+	.	ID=id-fmt;Note=Pfam match to entry PF00551 formyl_transf%2C Formyl transferase%2C score 105.10%2C E-value 3.9e-29;gbkey=misc_feature;gene=fmt
AL450380.1	EMBL	pseudogene	670028	671362	.	+	.	ID=gene-fmu;Name=fmu;gbkey=Gene;gene=fmu;gene_biotype=pseudogene;gene_synonym=ML0553;pseudo=true
AL450380.1	EMBL	CDS	670028	671362	.	+	0	ID=cds-fmu;Parent=gene-fmu;Note=Possible pseudogene of M. tuberculosis orthologue fmu (Best blastx score 1324);gbkey=CDS;gene=fmu;product=similar to Fmu protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	671416	672090	.	+	.	ID=gene-rpe;Name=rpe;gbkey=Gene;gene=rpe;gene_biotype=protein_coding;gene_synonym=ML0554
AL450380.1	EMBL	CDS	671416	672090	.	+	0	ID=cds-CAC30062.1;Parent=gene-rpe;Dbxref=GOA:Q9CCP9,InterPro:IPR000056,InterPro:IPR011060,InterPro:IPR013785,InterPro:IPR026019,NCBI_GP:CAC30062.1;Name=CAC30062.1;Note=Similar to M. tuberculosis rpe%2C Rv1408%2C ribulose-phosphate 3-epimerase%2C SW:RPE_MYCTU (P71676) (232 aa)%3B Fasta score E(): 0%2C 91.0%25 identity in 221 aa overlap. Similar to many e.g. Oryza sativa D-ribulose-5-phosphate 3-epimerase%2C TR:Q9SE42 (EMBL:AF189365) (228 aa)%3B Fasta score E(): 0%2C 47.0%25 identity in 215 aa overlap. Contains Pfam match to entry PF00834 Ribul_P_3_epim%2C Ribulose-phosphate 3 epimerase family. Contains PS01085 Ribulose-phosphate 3-epimerase family signature 1. Contains PS01086 Ribulose-phosphate 3-epimerase family signature 2.;gbkey=CDS;gene=rpe;product=putatibe ribulose-phosphate 3-epimerase;protein_id=CAC30062.1;transl_table=11
AL450380.1	EMBL	sequence_feature	671425	672021	.	+	.	ID=id-rpe;Note=Pfam match to entry PF00834 Ribul_P_3_epim%2C Ribulose-phosphate 3 epimerase family%2C score 410.10%2C E-value 2e-119;gbkey=misc_feature;gene=rpe
AL450380.1	EMBL	sequence_feature	671503	671547	.	+	.	ID=id-rpe-2;Note=PS01085 Ribulose-phosphate 3-epimerase family signature 1;gbkey=misc_feature;gene=rpe
AL450380.1	EMBL	sequence_feature	671809	671877	.	+	.	ID=id-rpe-3;Note=PS01086 Ribulose-phosphate 3-epimerase family signature 2;gbkey=misc_feature;gene=rpe
AL450380.1	EMBL	gene	672087	673106	.	+	.	ID=gene-ribG;Name=ribG;gbkey=Gene;gene=ribG;gene_biotype=protein_coding;gene_synonym=ML0555
AL450380.1	EMBL	CDS	672087	673106	.	+	0	ID=cds-CAC30063.1;Parent=gene-ribG;Dbxref=GOA:Q9CCP8,InterPro:IPR002125,InterPro:IPR002734,InterPro:IPR004794,InterPro:IPR016192,InterPro:IPR016193,InterPro:IPR024072,UniProtKB/TrEMBL:Q9CCP8,NCBI_GP:CAC30063.1;Name=CAC30063.1;Note=Similar to M. tuberculosis ribG%2C Rv1409%2C putative riboflavin biosynthesis protein%2C SW:RIBD_MYCTU (P71677) (339 aa)%3B Fasta score E(): 0%2C 78.2%25 identity in 339 aa overlap. Similar to many e.g. Bacillus subtilis ribD%2C diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)-uracil reductase%2C SW:RIBD_BACSU (P17618) (361 aa)%3B Fasta score E(): 7.9e-33%2C 39.2%25 identity in 357 aa overlap. Contains Pfam match to entry PF00383 dCMP_cyt_deam%2C Cytidine and deoxycytidylate deaminase zinc-binding region. Contains Pfam match to entry PF01872 RibD_C%2C RibD C-terminal domain. Contains PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature.;gbkey=CDS;gene=ribG;product=putative bifunctional riboflavin-specific deaminase/reductase;protein_id=CAC30063.1;transl_table=11
AL450380.1	EMBL	sequence_feature	672162	672395	.	+	.	ID=id-ribG;Note=Pfam match to entry PF00383 dCMP_cyt_deam%2C Cytidine and deoxycytidylate deaminase zinc-binding region%2C score 114.30%2C E-value 2.4e-30;gbkey=misc_feature;gene=ribG
AL450380.1	EMBL	sequence_feature	672255	672371	.	+	.	ID=id-ribG-2;Note=PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature;gbkey=misc_feature;gene=ribG
AL450380.1	EMBL	sequence_feature	672549	673058	.	+	.	ID=id-ribG-3;Note=Pfam match to entry PF01872 RibD_C%2C RibD C-terminal domain%2C score 258.40%2C E-value 9.8e-74;gbkey=misc_feature;gene=ribG
AL450380.1	EMBL	gene	673150	674679	.	-	.	ID=gene-ML0556;Name=ML0556;gbkey=Gene;gene=ML0556;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	673150	674679	.	-	0	ID=cds-CAC30064.1;Parent=gene-ML0556;Dbxref=GOA:Q9CCP7,InterPro:IPR005829,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q9CCP7,NCBI_GP:CAC30064.1;Name=CAC30064.1;Note=Similar to M. tuberculosis Rv1410c%2C probable drug resistance transporter%2C TR:P71678 (EMBL:AL123456) (518 aa)%3B Fasta score E(): 0%2C 82.0%25 identity in 506 aa overlap. Similar to many e.g. Bacillus subtilis bmr3%2C multidrug transporter%2C TR:P96712 (EMBL:D50098) (512 aa)%3B Fasta score E(): 5.4e-24%2C 27.1%25 identity in 446 aa overlap. Contains hydrophobic%2C probable membrane-spanning regions. Contains Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporter. Contains PS00216 Sugar transport proteins signature 1.%3B~Similar to ML1562;gbkey=CDS;gene=ML0556;product=putative integral membrane drug transport protein;protein_id=CAC30064.1;transl_table=11
AL450380.1	EMBL	sequence_feature	673459	674640	.	-	.	ID=id-ML0556;Note=Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporter%2C score -86.10%2C E-value 0.00086;gbkey=misc_feature;gene=ML0556
AL450380.1	EMBL	sequence_feature	674431	674481	.	-	.	ID=id-ML0556-2;Note=PS00216 Sugar transport proteins signature 1;gbkey=misc_feature;gene=ML0556
AL450380.1	EMBL	gene	674679	675395	.	-	.	ID=gene-lprG;Name=lprG;gbkey=Gene;gene=lprG;gene_biotype=protein_coding;gene_synonym=ML0557
AL450380.1	EMBL	CDS	674679	675395	.	-	0	ID=cds-CAC30065.1;Parent=gene-lprG;Dbxref=GOA:Q9CCP6,InterPro:IPR009830,InterPro:IPR029046,NCBI_GP:CAC30065.1;Name=CAC30065.1;Note=Similar to M. tuberculosis lprG%2C Rv1411c%2C putative lipoprotein%2C SW:LPRG_MYCTU (P71679) (236 aa)%3B Fasta score E(): 0%2C 68.1%25 identity in 238 aa overlap and to other M. tuberculosis lipoproteins. 27 kDa antigen (Mycobacterium bovis). Contains probable N-terminal signal sequence. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.%3B~Similar to ML0136;gbkey=CDS;gene=lprG;product=putative lipoprotein;protein_id=CAC30065.1;transl_table=11
AL450380.1	EMBL	sequence_feature	675315	675347	.	-	.	ID=id-lprG;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=lprG
AL450380.1	EMBL	gene	675552	676175	.	+	.	ID=gene-ribC;Name=ribC;gbkey=Gene;gene=ribC;gene_biotype=protein_coding;gene_synonym=ML0558
AL450380.1	EMBL	CDS	675552	676175	.	+	0	ID=cds-CAC30066.1;Parent=gene-ribC;Dbxref=GOA:Q9CCP5,InterPro:IPR001783,InterPro:IPR017938,InterPro:IPR023366,InterPro:IPR026017,UniProtKB/TrEMBL:Q9CCP5,NCBI_GP:CAC30066.1;Name=CAC30066.1;Note=Similar to M. tuberculosis ribC%2C Rv1412%2C riboflavin synthase [alpha] chain%2C SW:RISA_MYCTU (P71680) (201 aa)%3B Fasta score E(): 0%2C 82.4%25 identity in 199 aa overlap. Similar to many e.g. Bacillus subtilis ribE%2C riboflavin synthase alpha chain%2C SW:RISA_BACSU (P16440) (215 aa)%3B Fasta score E(): 9.5e-28%2C 43.4%25 identity in 198 aa overlap. Contains 2 Pfam matches to entry PF00677 Lum_binding%2C Lumazine binding domain. Contains 2 x PS00693 Riboflavin synthase alpha chain family signature.;gbkey=CDS;gene=ribC;product=putative riboflavin synthase [alpha] chain;protein_id=CAC30066.1;transl_table=11
AL450380.1	EMBL	sequence_feature	675585	675812	.	+	.	ID=id-ribC;Note=Pfam match to entry PF00677 Lum_binding%2C Lumazine binding domain%2C score 59.90%2C E-value 5.6e-14;gbkey=misc_feature;gene=ribC
AL450380.1	EMBL	sequence_feature	675768	675806	.	+	.	ID=id-ribC-2;Note=PS00693 Riboflavin synthase alpha chain family signature;gbkey=misc_feature;gene=ribC
AL450380.1	EMBL	sequence_feature	675849	676112	.	+	.	ID=id-ribC-3;Note=Pfam match to entry PF00677 Lum_binding%2C Lumazine binding domain%2C score 77.10%2C E-value 3.7e-19;gbkey=misc_feature;gene=ribC
AL450380.1	EMBL	sequence_feature	676068	676106	.	+	.	ID=id-ribC-4;Note=PS00693 Riboflavin synthase alpha chain family signature;gbkey=misc_feature;gene=ribC
AL450380.1	EMBL	gene	676302	677609	.	+	.	ID=gene-ribA;Name=ribA;gbkey=Gene;gene=ribA;gene_biotype=protein_coding;gene_synonym=ML0559
AL450380.1	EMBL	CDS	676302	677609	.	+	0	ID=cds-CAC30067.1;Parent=gene-ribA;Dbxref=GOA:Q9CCP4,InterPro:IPR000422,InterPro:IPR000926,InterPro:IPR016299,InterPro:IPR017945,UniProtKB/TrEMBL:Q9CCP4,NCBI_GP:CAC30067.1;Name=CAC30067.1;Note=Similar to M. tuberculosis ribA2%2C Rv1415%2C putative GTP cyclohydrolase II%2C SW:GCH2_MYCTU (P71684) (425 aa)%3B Fasta score E(): 0%2C 93.4%25 identity in 425 aa overlap. Similar to many e.g. Actinobacillus pleuropneumoniae ribA%2C riboflavin biosynthesis protein%2C SW:GCH2_ACTPL (P50855) (401 aa)%3B Fasta score E(): 0%2C 52.4%25 identity in 401 aa overlap. Contains Pfam match to entry PF00926 DHBP_synthase%2C 3%2C4-dihydroxy-2-butanone 4-phosphate synthase. Contains Pfam match to entry PF00925 GTP_cyclohydro2%2C GTP cyclohydrolase II.;gbkey=CDS;gene=ribA;product=putative GTP cyclohydrolase II/3%2C4-dihydroxy-2-butanone-4-phosphate synthase;protein_id=CAC30067.1;transl_table=11
AL450380.1	EMBL	sequence_feature	676350	676943	.	+	.	ID=id-ribA;Note=Pfam match to entry PF00926 DHBP_synthase%2C 3%2C4-dihydroxy-2-butanone 4-phosphate synthase%2C score 455.00%2C E-value 6.3e-133;gbkey=misc_feature;gene=ribA
AL450380.1	EMBL	sequence_feature	676950	677477	.	+	.	ID=id-ribA-2;Note=Pfam match to entry PF00925 GTP_cyclohydro2%2C GTP cyclohydrolase II%2C score 402.80%2C E-value 3.3e-117;gbkey=misc_feature;gene=ribA
AL450380.1	EMBL	gene	677606	678088	.	+	.	ID=gene-ribH;Name=ribH;gbkey=Gene;gene=ribH;gene_biotype=protein_coding;gene_synonym=ML0560
AL450380.1	EMBL	CDS	677606	678088	.	+	0	ID=cds-CAC30068.1;Parent=gene-ribH;Dbxref=GOA:Q9CCP3,InterPro:IPR002180,NCBI_GP:CAC30068.1;Name=CAC30068.1;Note=Similar to M. tuberculosis ribH%2C Rv1416%2C riboflavin synthase [beta] chain%2C SW:RISB_MYCTU (P71685) (154 aa)%3B Fasta score E(): 0%2C 78.9%25 identity in 152 aa overlap. Similar to many e.g. Actinobacillus pleuropneumoniae ribH%2C 6%2C7-dimethyl-8-ribityllumazine synthase%2C SW:RISB_ACTPL (P50856) (153 aa)%3B Fasta score E(): 1.7e-15%2C 44.3%25 identity in 140 aa overlap. Contains Pfam match to entry PF00885 DMRL_synthase%2C 6%2C7-dimethyl-8-ribityllumazine synthase.;gbkey=CDS;gene=ribH;product=6%2C7-dimethyl-8-ribityllumazine synthase;protein_id=CAC30068.1;transl_table=11
AL450380.1	EMBL	sequence_feature	677648	678073	.	+	.	ID=id-ribH;Note=Pfam match to entry PF00885 DMRL_synthase%2C 6%2C7-dimethyl-8-ribityllumazine synthase%2C score 250.90%2C E-value 1.7e-71;gbkey=misc_feature;gene=ribH
AL450380.1	EMBL	gene	678085	678555	.	+	.	ID=gene-ML0561;Name=ML0561;gbkey=Gene;gene=ML0561;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	678085	678555	.	+	0	ID=cds-CAC30069.1;Parent=gene-ML0561;Dbxref=InterPro:IPR019692,UniProtKB/TrEMBL:Q9CCP2,NCBI_GP:CAC30069.1;Name=CAC30069.1;Note=Similar to M. tuberculosis Rv1417%2C hypothetical protein%2C SW:YE17_MYCTU (P71686) (154 aa)%3B Fasta score E(): 0%2C 75.5%25 identity in 143 aa overlap. Similar to other hypothetical proteins e.g. Corynebacterium ammoniagenes ribX%2C hypothetical protein%2C TR:O24754 (EMBL:AB003693) (184 aa)%3B Fasta score E(): 2.1e-15%2C 34.5%25 identity in 148 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0561;product=putative membrane protein;protein_id=CAC30069.1;transl_table=11
AL450380.1	EMBL	gene	678870	680813	.	+	.	ID=gene-uvrC;Name=uvrC;gbkey=Gene;gene=uvrC;gene_biotype=protein_coding;gene_synonym=ML0562
AL450380.1	EMBL	CDS	678870	680813	.	+	0	ID=cds-CAC30070.1;Parent=gene-uvrC;Dbxref=GOA:Q9CCP1,InterPro:IPR000305,InterPro:IPR000445,InterPro:IPR001162,InterPro:IPR001943,InterPro:IPR003583,InterPro:IPR004791,InterPro:IPR010994,InterPro:IPR027299,NCBI_GP:CAC30070.1;Name=CAC30070.1;Note=Similar to M. tuberculosis uvrC%2C Rv1420%2C excinuclease ABC subunit C%2C SW:UVRC_MYCTU (P71689) (646 aa)%3B Fasta score E(): 0%2C 87.6%25 identity in 646 aa overlap. Similar to many e.g. Escherichia coli uvrC%2C excinuclease ABC subunit C%2C SW:UVRC_ECOLI (P07028) (231 aa)%3B BlastP Expect 8.9. Contains Pfam match to entry PF01541 Exci_endo_N%2C Endo/excinuclease amino terminal domain. Contains Pfam match to entry PF02151 UVR%2C UvrB/uvrC motif. Contains Pfam match to entry PF00633 HHH%2C Helix-hairpin-helix motif.;gbkey=CDS;gene=uvrC;product=putative excinuclease ABC subunit C;protein_id=CAC30070.1;transl_table=11
AL450380.1	EMBL	sequence_feature	678918	679190	.	+	.	ID=id-uvrC;Note=Pfam match to entry PF01541 Exci_endo_N%2C Endo/excinuclease amino terminal domain%2C score 55.10%2C E-value 1.5e-12;gbkey=misc_feature;gene=uvrC
AL450380.1	EMBL	sequence_feature	679491	679598	.	+	.	ID=id-uvrC-2;Note=Pfam match to entry PF02151 UVR%2C UvrB/uvrC motif%2C score 42.80%2C E-value 7.7e-09;gbkey=misc_feature;gene=uvrC
AL450380.1	EMBL	sequence_feature	680691	680780	.	+	.	ID=id-uvrC-3;Note=Pfam match to entry PF00633 HHH%2C Helix-hairpin-helix motif.%2C score 28.10%2C E-value 0.00021;gbkey=misc_feature;gene=uvrC
AL450380.1	EMBL	gene	680810	681706	.	+	.	ID=gene-ML0563;Name=ML0563;gbkey=Gene;gene=ML0563;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	680810	681706	.	+	0	ID=cds-CAC30071.1;Parent=gene-ML0563;Dbxref=GOA:Q9CCP0,InterPro:IPR005337,InterPro:IPR027417,NCBI_GP:CAC30071.1;Name=CAC30071.1;Note=Similar to M. tuberculosis Rv1421%2C conserved hypothetical protein%2C SW:YE21_MYCTU (P71690) (301 aa)%3B Fasta score E(): 0%2C 92.3%25 identity in 285 aa overlap. Conserved in many bacteria.;gbkey=CDS;gene=ML0563;product=conserved hypothetical protein;protein_id=CAC30071.1;transl_table=11
AL450380.1	EMBL	gene	681703	682782	.	+	.	ID=gene-ML0564;Name=ML0564;gbkey=Gene;gene=ML0564;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	681703	682782	.	+	0	ID=cds-CAC30072.1;Parent=gene-ML0564;Dbxref=GOA:Q9CCN9,InterPro:IPR002882,InterPro:IPR010119,NCBI_GP:CAC30072.1;Name=CAC30072.1;Note=Similar to M. tuberculosis Rv1422%2C conserved hypothetical protein%2C SW:YE22_MYCTU (P71691) (342 aa)%3B Fasta score E(): 0%2C 85.7%25 identity in 350 aa overlap. Conserved in many bacteria.;gbkey=CDS;gene=ML0564;product=conserved hypothetical protein;protein_id=CAC30072.1;transl_table=11
AL450380.1	EMBL	gene	682779	683756	.	+	.	ID=gene-ML0565;Name=ML0565;gbkey=Gene;gene=ML0565;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	682779	683756	.	+	0	ID=cds-CAC30073.1;Parent=gene-ML0565;Dbxref=GOA:Q9CCN8,InterPro:IPR003802,InterPro:IPR018478,InterPro:IPR023054,NCBI_GP:CAC30073.1;Name=CAC30073.1;Note=Similar to M. tuberculosis Rv1423%2C putative transcriptional regulator%2C TR:P71692 (EMBL:AL123456) (325 aa)%3B Fasta score E(): 0%2C 92.0%25 identity in 325 aa overlap. Similar to Streptomyces coelicolor whiA%2C sporulation regulatory protein%2C TR:Q9S4Y1 (EMBL:AF106003) (330 aa)%3B Fasta score E(): 0%2C 67.6%25 identity in 324 aa overlap.;gbkey=CDS;gene=ML0565;product=putative transcriptional regulator;protein_id=CAC30073.1;transl_table=11
AL450380.1	EMBL	pseudogene	683866	684275	.	+	.	ID=gene-ML0566;Name=ML0566;gbkey=Gene;gene=ML0566;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	683866	684275	.	+	0	ID=cds-ML0566;Parent=gene-ML0566;Note=Possible pseudogene of M. tuberculosis orthologue Rv1425 (Best blastx score 264);gbkey=CDS;gene=ML0566;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	684845	686398	.	+	.	ID=gene-ML0567;Name=ML0567;gbkey=Gene;gene=ML0567;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	684845	686398	.	+	0	ID=cds-ML0567;Parent=gene-ML0567;Note=Possible pseudogene of M. tuberculosis orthologue Rv1431 (Best blastx score 550);gbkey=CDS;gene=ML0567;product=possible transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	686803	686806	.	+	.	ID=id-AL450380.1:686803..686806;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	686813	687406	.	+	.	ID=gene-ML0568;Name=ML0568;gbkey=Gene;gene=ML0568;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	686813	687406	.	+	0	ID=cds-CAC30076.1;Parent=gene-ML0568;Dbxref=UniProtKB/TrEMBL:Q9CCN7,NCBI_GP:CAC30076.1;Name=CAC30076.1;Note=Similar to M. tuberculosis Rv1435c%2C hypothetical protein%2C TR:O06823 (EMBL:AL123456) (202 aa)%3B Fasta score E(): 1.7e-07%2C 38.9%25 identity in 203 aa overlap. Pro- and Val-rich protein.;gbkey=CDS;gene=ML0568;product=hypothetical protein;protein_id=CAC30076.1;transl_table=11
AL450380.1	EMBL	repeat_region	687053	687177	.	+	.	ID=id-ML0568;Note=5.6 copies of 27 bp direct repeat%2C Consensus CCGGTGGTGCCGCCTGGTGGGTTTCCC;gbkey=repeat_region;gene=ML0568
AL450380.1	EMBL	repeat_region	690412	691665	.	-	.	ID=id-AL450380.1:690412..691665;Note=LEPRPT%2C copy 1%2C 1254 bp. Shows 99-100%25 identity with regions 727207..728460%2C 1539937..1541188%2C 1480312..1481018%2C 2203983..2204515%2C 691673..691731;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	690413	690473	.	-	.	ID=id-AL450380.1:690413..690473;Note=61 bp repeat found at 3'-end of LEPRPT and 5' to REPLEP;gbkey=repeat_region
AL450380.1	EMBL	gene	693611	694426	.	-	.	ID=gene-ML0569;Name=ML0569;gbkey=Gene;gene=ML0569;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	693611	694426	.	-	0	ID=cds-CAC30077.1;Parent=gene-ML0569;Dbxref=GOA:Q7AQI6,InterPro:IPR005490,UniProtKB/TrEMBL:Q7AQI6,NCBI_GP:CAC30077.1;Name=CAC30077.1;Note=Similar to M. tuberculosis Rv1433%2C putative membrane protein%2C TR:O06825 (EMBL:AL123456) (271 aa)%3B Fasta score E(): 0%2C 68.3%25 identity in 271 aa overlap. Shows weak similarity to other hypothetical proteins in M. tuberculosis. Previously sequenced as TR:Q49706 (EMBL:U00013) (271 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 271 aa overlap.%3B~Similar to ML0426%2C ML2446 and ML2664;gbkey=CDS;gene=ML0569;product=putative membrane protein;protein_id=CAC30077.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	694876	694882	.	+	.	ID=id-AL450380.1:694876..694882;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	694889	695908	.	+	.	ID=gene-gap;Name=gap;gbkey=Gene;gene=gap;gene_biotype=protein_coding;gene_synonym=ML0570
AL450380.1	EMBL	CDS	694889	695908	.	+	0	ID=cds-CAC30078.1;Parent=gene-gap;Dbxref=GOA:P46713,InterPro:IPR006424,InterPro:IPR016040,InterPro:IPR020828,InterPro:IPR020829,InterPro:IPR020830,InterPro:IPR020831,NCBI_GP:CAC30078.1;Name=CAC30078.1;Note=Similar to M. tuberculosis gap%2C Rv1436%2C glyceraldehyde 3-phosphate dehydrogenase%2C SW:G3P_MYCTU (O06822) (339 aa)%3B Fasta score E(): 0%2C 89.1%25 identity in 339 aa overlap. Similar to many e.g. Mycobacterium avium gap%2C glyceraldehyde 3-phosphate dehydrogenase%2C SW:G3P_MYCAV (P94915) (339 aa)%3B Fasta score E(): 0%2C 87.9%25 identity in 339 aa overlap. Previously sequenced as SW:G3P_MYCLE (P46713) (339 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 339 aa overlap. Contains Pfam match to entry PF00044 gpdh%2C glyceraldehyde 3-phosphate dehydrogenases. Contains PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.;gbkey=CDS;gene=gap;product=glyceraldehyde 3-phosphate dehydrogenase;protein_id=CAC30078.1;transl_table=11
AL450380.1	EMBL	sequence_feature	694892	695902	.	+	.	ID=id-gap;Note=Pfam match to entry PF00044 gpdh%2C glyceraldehyde 3-phosphate dehydrogenases%2C score 733.80%2C E-value 7.9e-219;gbkey=misc_feature;gene=gap
AL450380.1	EMBL	sequence_feature	695354	695377	.	+	.	ID=id-gap-2;Note=PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site;gbkey=misc_feature;gene=gap
AL450380.1	EMBL	gene	695911	697161	.	+	.	ID=gene-pgk;Name=pgk;gbkey=Gene;gene=pgk;gene_biotype=protein_coding;gene_synonym=ML0571
AL450380.1	EMBL	CDS	695911	697161	.	+	0	ID=cds-CAC30079.1;Parent=gene-pgk;Dbxref=GOA:P46712,InterPro:IPR001576,InterPro:IPR015824,InterPro:IPR015901,InterPro:IPR015911,NCBI_GP:CAC30079.1;Name=CAC30079.1;Note=Similar to M. tuberculosis pgk%2C Rv1437%2C phosphoglycerate kinase%2C SW:PGK_MYCTU (O06821) (412 aa)%3B Fasta score E(): 0%2C 80.6%25 identity in 412 aa overlap. Similar to many e.g. Corynebacterium glutamicum pgk%2C phosphoglycerate kinase%2C SW:PGK_CORGL (Q01655) (403 aa)%3B Fasta score E(): 0%2C 59.2%25 identity in 407 aa overlap. Previously sequenced as SW:PGK_MYCLE (P46712) (416 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 416 aa overlap. Contains Pfam match to entry PF00162 PGK%2C Phosphoglycerate kinases. Contains PS00111 Phosphoglycerate kinase signature.;gbkey=CDS;gene=pgk;product=phosphoglycerate kinase;protein_id=CAC30079.1;transl_table=11
AL450380.1	EMBL	sequence_feature	695911	697140	.	+	.	ID=id-pgk;Note=Pfam match to entry PF00162 PGK%2C Phosphoglycerate kinases%2C score 757.00%2C E-value 7.9e-224;gbkey=misc_feature;gene=pgk
AL450380.1	EMBL	sequence_feature	695962	695994	.	+	.	ID=id-pgk-2;Note=PS00111 Phosphoglycerate kinase signature;gbkey=misc_feature;gene=pgk
AL450380.1	EMBL	ribosome_entry_site	697149	697153	.	+	.	ID=id-pgk-3;Parent=gene-pgk;Note=possible RBS;gbkey=regulatory;gene=pgk;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	697158	697943	.	+	.	ID=gene-tpi;Name=tpi;gbkey=Gene;gene=tpi;gene_biotype=protein_coding;gene_synonym=ML0572
AL450380.1	EMBL	CDS	697158	697943	.	+	0	ID=cds-CAC30080.1;Parent=gene-tpi;Dbxref=GOA:P46711,InterPro:IPR000652,InterPro:IPR013785,InterPro:IPR020861,InterPro:IPR022896,NCBI_GP:CAC30080.1;Name=CAC30080.1;Note=Similar to M. tuberculosis tpi%2C Rv1438%2C triosephosphate isomerase%2C SW:TPIS_MYCTU (O08408) (261 aa)%3B Fasta score E(): 0%2C 83.9%25 identity in 261 aa overlap. Similar to many e.g. Corynebacterium glutamicum tpi%2C triosephosphate isomerase%2C SW:TPIS_CORGL (P19583) (259 aa)%3B Fasta score E(): 0%2C 64.5%25 identity in 256 aa overlap. Previously sequenced as SW:TPIS_MYCLE (P46711) (261 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 261 aa overlap. Contains Pfam match to entry PF00121 TIM%2C Triosephosphate isomerase. Contains PS00171 Triosephosphate isomerase active site.;gbkey=CDS;gene=tpi;product=triosephosphate isomerase;protein_id=CAC30080.1;transl_table=11
AL450380.1	EMBL	sequence_feature	697164	697931	.	+	.	ID=id-tpi;Note=Pfam match to entry PF00121 TIM%2C Triosephosphate isomerase%2C score 524.60%2C E-value 3.7e-169;gbkey=misc_feature;gene=tpi
AL450380.1	EMBL	sequence_feature	697665	697697	.	+	.	ID=id-tpi-2;Note=PS00171 Triosephosphate isomerase active site;gbkey=misc_feature;gene=tpi
AL450380.1	EMBL	gene	697927	698202	.	+	.	ID=gene-ML0573;Name=ML0573;gbkey=Gene;gene=ML0573;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	697927	698202	.	+	0	ID=cds-CAC30081.1;Parent=gene-ML0573;Dbxref=UniProtKB/TrEMBL:Q7AQI5,NCBI_GP:CAC30081.1;Name=CAC30081.1;Note=Unknown function. Previously sequenced as TR:Q49684 (EMBL:U00013) (91 aa)%3B Fasta score E(): 0%2C 98.9%25 identity in 91 aa overlap. Contains Pfam match to entry PF00121 TIM%2C Triosephosphate isomerase.;gbkey=CDS;gene=ML0573;product=hypothetical protein;protein_id=CAC30081.1;transl_table=11
AL450380.1	EMBL	gene	698199	698516	.	+	.	ID=gene-ML0574;Name=ML0574;gbkey=Gene;gene=ML0574;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	698199	698516	.	+	0	ID=cds-CAC30082.1;Parent=gene-ML0574;Dbxref=UniProtKB/TrEMBL:Q7AQI4,NCBI_GP:CAC30082.1;Name=CAC30082.1;Note=Unknown function. Previously sequenced as TR:Q49680 (EMBL:U00013) (105 aa)%3B Fasta score E(): 0%2C 99.0%25 identity in 105 aa overlap.;gbkey=CDS;gene=ML0574;product=hypothetical protein;protein_id=CAC30082.1;transl_table=11
AL450380.1	EMBL	gene	698674	698892	.	+	.	ID=gene-ML0575;Name=ML0575;gbkey=Gene;gene=ML0575;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	698674	698892	.	+	0	ID=cds-CAC30083.1;Parent=gene-ML0575;Dbxref=UniProtKB/TrEMBL:Q9CCN6,NCBI_GP:CAC30083.1;Name=CAC30083.1;Note=Unknown function.;gbkey=CDS;gene=ML0575;product=hypothetical protein;protein_id=CAC30083.1;transl_table=11
AL450380.1	EMBL	gene	699708	699938	.	+	.	ID=gene-ML0576;Name=ML0576;gbkey=Gene;gene=ML0576;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	699708	699938	.	+	0	ID=cds-CAC30084.1;Parent=gene-ML0576;Dbxref=UniProtKB/TrEMBL:Q7AQI3,NCBI_GP:CAC30084.1;Name=CAC30084.1;Note=Unknown function. Previously sequenced as TR:Q49681 (EMBL:U00013) (76 aa)%3B Fasta score E(): 1.5e-31%2C 100.0%25 identity in 76 aa overlap.;gbkey=CDS;gene=ML0576;product=hypothetical protein;protein_id=CAC30084.1;transl_table=11
AL450380.1	EMBL	gene	699950	700183	.	+	.	ID=gene-ML0577;Name=ML0577;gbkey=Gene;gene=ML0577;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	699950	700183	.	+	0	ID=cds-CAC30085.1;Parent=gene-ML0577;Dbxref=GOA:P38388,InterPro:IPR004692,NCBI_GP:CAC30085.1;Name=CAC30085.1;Note=Similar to M. tuberculosis secG%2C Rv1440%2C probable protein-export membrane protein%2C SW:SECG_MYCTU (O06819) (77 aa)%3B Fasta score E(): 1.1e-25%2C 96.1%25 identity in 77 aa overlap. Similar to many e.g. Escherichia coli secG%2C protein-export membrane protein%2C SW:SECG_ECOLI (P33582) (110 aa)%3B Fasta score E(): 0.06%2C 29.0%25 identity in 69 aa overlap. Previously sequenced as SW:SECG_MYCLE (P38388) (77 aa)%3B Fasta score E(): 3.1e-26%2C 100.0%25 identity in 77 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0577;product=putative protein-export membrane protein;protein_id=CAC30085.1;transl_table=11
AL450380.1	EMBL	gene	700214	703018	.	+	.	ID=gene-ppc;Name=ppc;gbkey=Gene;gene=ppc;gene_biotype=protein_coding;gene_synonym=ML0578
AL450380.1	EMBL	CDS	700214	703018	.	+	0	ID=cds-CAC30086.1;Parent=gene-ppc;Dbxref=GOA:P46710,InterPro:IPR015813,InterPro:IPR018129,InterPro:IPR021135,InterPro:IPR022805,NCBI_GP:CAC30086.1;Name=CAC30086.1;Note=Similar to many e.g. Rhodopseudomonas palustris ppc%2C phosphoenolpyruvate carboxylase%2C SW:CAPP_RHOPA (O32483) (936 aa)%3B Fasta score E(): 0%2C 45.7%25 identity in 936 aa overlap. Previously sequenced as SW:CAPP_MYCLE (P46710) (907 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 907 aa overlap. Contains 2 Pfam matches to entry PF00311 PEPcase%2C Phosphoenolpyruvate carboxylase. Contains PS00781 Phosphoenolpyruvate carboxylase active site 1. Contains PS00393 Phosphoenolpyruvate carboxylase active site 2.;gbkey=CDS;gene=ppc;product=putative phosphoenolpyruvate carboxylase;protein_id=CAC30086.1;transl_table=11
AL450380.1	EMBL	sequence_feature	700454	701158	.	+	.	ID=id-ppc;Note=Pfam match to entry PF00311 PEPcase%2C Phosphoenolpyruvate carboxylase%2C score 49.50%2C E-value 1.2e-14;gbkey=misc_feature;gene=ppc
AL450380.1	EMBL	sequence_feature	700682	700717	.	+	.	ID=id-ppc-2;Note=PS00781 Phosphoenolpyruvate carboxylase active site 1;gbkey=misc_feature;gene=ppc
AL450380.1	EMBL	sequence_feature	701390	702934	.	+	.	ID=id-ppc-3;Note=Pfam match to entry PF00311 PEPcase%2C Phosphoenolpyruvate carboxylase%2C score 347.00%2C E-value 1.2e-103;gbkey=misc_feature;gene=ppc
AL450380.1	EMBL	sequence_feature	701963	702001	.	+	.	ID=id-ppc-4;Note=PS00393 Phosphoenolpyruvate carboxylase active site 2;gbkey=misc_feature;gene=ppc
AL450380.1	EMBL	gene	703242	703985	.	-	.	ID=gene-pgl;Name=pgl;gbkey=Gene;gene=pgl;gene_biotype=protein_coding;gene_synonym=ML0579
AL450380.1	EMBL	CDS	703242	703985	.	-	0	ID=cds-CAC30087.1;Parent=gene-pgl;Dbxref=GOA:Q49700,InterPro:IPR005900,InterPro:IPR006148,NCBI_GP:CAC30087.1;Name=CAC30087.1;Note=Similar to M. tuberculosis devB%2C Rv1445c%2C 6-phosphogluconolactonase%2C SW:6PGL_MYCTU (O06814) (247 aa)%3B Fasta score E(): 0%2C 72.8%25 identity in 246 aa overlap. Similar to many e.g. C-terminal half of Homo sapiens gdh/6pgl endoplasmic bifunctional protein precursor (6-phosphogluconolactonase)%2C SW:. Previously sequenced as SW:6PGL_MYCLE (Q49700) (247 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 247 aa overlap. Contains Pfam match to entry PF01182 Glucosamine_iso%2C Glucosamine-6-phosphate isomerase.;gbkey=CDS;gene=pgl;product=putative 6-phosphogluconolactonase;protein_id=CAC30087.1;transl_table=11
AL450380.1	EMBL	sequence_feature	703269	703913	.	-	.	ID=id-pgl;Note=Pfam match to entry PF01182 Glucosamine_iso%2C Glucosamine-6-phosphate isomerase%2C score 4.50%2C E-value 1.4e-06;gbkey=misc_feature;gene=pgl
AL450380.1	EMBL	gene	704001	704798	.	-	.	ID=gene-ML0580;Name=ML0580;gbkey=Gene;gene=ML0580;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	704001	704798	.	-	0	ID=cds-CAC30088.1;Parent=gene-ML0580;Dbxref=InterPro:IPR004555,UniProtKB/TrEMBL:Q7AQI2,NCBI_GP:CAC30088.1;Name=CAC30088.1;Note=Similar to M. tuberculosis Rv1446c%2C hypothetical protein%2C TR:O06813 (EMBL:AL123456) (303 aa)%3B Fasta score E(): 0%2C 70.3%25 identity in 239 aa overlap. Similar to hypothetical proteins from Streptomyces coelicolor e.g. SCC22.20%2C hypothetical protein%2C TR:Q9XAB8 (EMBL:AL096839) (351 aa)%3B Fasta score E(): 7.1e-21%2C 36.0%25 identity in 203 aa overlap%2C although these have a short N-terminal extension relative to this homologue. Previously sequencd as TR:Q49699 (EMBL:U00013) (265 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 265 aa overlap.;gbkey=CDS;gene=ML0580;product=conserved hypothetical protein;protein_id=CAC30088.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	704813	704818	.	-	.	ID=id-AL450380.1:704813..704818;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	704918	706434	.	-	.	ID=gene-zwf2;Name=zwf2;gbkey=Gene;gene=zwf2;gene_biotype=pseudogene;gene_synonym=ML0581;pseudo=true
AL450380.1	EMBL	CDS	704918	706434	.	-	0	ID=cds-zwf2;Parent=gene-zwf2;Note=Possible pseudogene of M. tuberculosis orthologue zwf2 (Best blastx score 638);gbkey=CDS;gene=zwf2;product=glucose-6-phosphate 1-dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	706461	707588	.	-	.	ID=gene-tal;Name=tal;gbkey=Gene;gene=tal;gene_biotype=protein_coding;gene_synonym=ML0582
AL450380.1	EMBL	CDS	706461	707588	.	-	0	ID=cds-CAC30090.1;Parent=gene-tal;Dbxref=GOA:P55193,InterPro:IPR001585,InterPro:IPR004732,InterPro:IPR013785,InterPro:IPR018225,NCBI_GP:CAC30090.1;Name=CAC30090.1;Note=Similar to M. tuberculosis tal%2C Rv1448c%2C transaldolase%2C SW:TAL_MYCTU (O06812) (373 aa)%3B Fasta score E(): 0%2C 78.9%25 identity in 370 aa overlap. Similar to many e.g. Escherichia coli tal%2C transaldolase%2C SW:TALA_ECOLI (P78258) (316 aa)%3B Fasta score E(): 7e-05%2C 29.6%25 identity in 270 aa overlap. Previously sequenced as SW:TAL_MYCLE (P55193) (375 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 375 aa overlap. Contains Pfam match to entry PF00923 Transaldolase%2C Transaldolase. Contains PS01054 Transaldolase signature 1. Contains PS00958 Transaldolase active site.;gbkey=CDS;gene=tal;product=putative transaldolase;protein_id=CAC30090.1;transl_table=11
AL450380.1	EMBL	sequence_feature	706746	707522	.	-	.	ID=id-tal;Note=Pfam match to entry PF00923 Transaldolase%2C Transaldolase%2C score 413.80%2C E-value 1.6e-120;gbkey=misc_feature;gene=tal
AL450380.1	EMBL	sequence_feature	707112	707165	.	-	.	ID=id-tal-2;Note=PS00958 Transaldolase active site;gbkey=misc_feature;gene=tal
AL450380.1	EMBL	sequence_feature	707427	707453	.	-	.	ID=id-tal-3;Note=PS01054 Transaldolase signature 1;gbkey=misc_feature;gene=tal
AL450380.1	EMBL	gene	707605	709704	.	-	.	ID=gene-tkt;Name=tkt;gbkey=Gene;gene=tkt;gene_biotype=protein_coding;gene_synonym=ML0583
AL450380.1	EMBL	CDS	707605	709704	.	-	0	ID=cds-CAC30091.1;Parent=gene-tkt;Dbxref=GOA:P46708,InterPro:IPR005474,InterPro:IPR005475,InterPro:IPR005476,InterPro:IPR005478,InterPro:IPR009014,InterPro:IPR020826,InterPro:IPR029061,NCBI_GP:CAC30091.1;Name=CAC30091.1;Note=Similar to M. tuberculosis tkt%2C Rv1449c%2C transketolase%2C SW:TKT_MYCTU (O06811) (700 aa)%3B Fasta score E(): 0%2C 89.1%25 identity in 700 aa overlap. Similar to many e.g. Saccharomyces cerevisiae tkl2%2C transketolase 2%2C SW:TKT2_YEAST (P33315) (681 aa)%3B Fasta score E(): 0%2C 42.8%25 identity in 684 aa overlap. Previously sequenced as SW:TKT_MYCLE (P46708) (699 aa)%3B Fasta score E(): 0%2C 99.9%25 identity in 699 aa overlap. Contains Pfam match to entry PF00456 transketolase%2C Transketolase. Contains PS00801 Transketolase signature 1. Contains PS00802 Transketolase signature 2.;gbkey=CDS;gene=tkt;product=transketolase;protein_id=CAC30091.1;transl_table=11
AL450380.1	EMBL	sequence_feature	707638	709611	.	-	.	ID=id-tkt;Note=Pfam match to entry PF00456 transketolase%2C Transketolase%2C score 1459.70%2C E-value 0;gbkey=misc_feature;gene=tkt
AL450380.1	EMBL	sequence_feature	708166	708216	.	-	.	ID=id-tkt-2;Note=PS00802 Transketolase signature 2;gbkey=misc_feature;gene=tkt
AL450380.1	EMBL	sequence_feature	709552	709614	.	-	.	ID=id-tkt-3;Note=PS00801 Transketolase signature 1;gbkey=misc_feature;gene=tkt
AL450380.1	EMBL	ribosome_entry_site	709712	709716	.	-	.	ID=id-AL450380.1:709712..709716;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	709904	710869	.	+	.	ID=gene-ctaB;Name=ctaB;gbkey=Gene;gene=ctaB;gene_biotype=protein_coding;gene_synonym=ML0584
AL450380.1	EMBL	CDS	709904	710869	.	+	0	ID=cds-CAC30092.1;Parent=gene-ctaB;Dbxref=GOA:Q9CCN4,InterPro:IPR000537,InterPro:IPR006369,NCBI_GP:CAC30092.1;Name=CAC30092.1;Note=EC_number%3D2.5.1.-%3B~Similar to M. tuberculosis ctaB%2C Rv1451%2C cytochrome c oxidase assembly factor%2C TR:O06809 (EMBL:AL123456) (308 aa)%3B Fasta score E(): 0%2C 82.7%25 identity in 307 aa overlap. Similar to many e.g. Bacillus firmus ctaB%2C protoheme IX farnesyltransferase%2C SW:COXX_BACFI (Q04444) (312 aa)%3B Fasta score E(): 7.8e-24%2C 33.6%25 identity in 283 aa overlap. Previously sequenced as TR:Q49685 (EMBL:U00013) (300 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 300 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions. Contains Pfam match to entry PF01040 UbiA%2C UbiA prenyltransferase family.;gbkey=CDS;gene=ctaB;product=putative protoheme IX farnesyltransferase;protein_id=CAC30092.1;transl_table=11
AL450380.1	EMBL	sequence_feature	710036	710845	.	+	.	ID=id-ctaB;Note=Pfam match to entry PF01040 UbiA%2C UbiA prenyltransferase family%2C score 360.30%2C E-value 2e-104;gbkey=misc_feature;gene=ctaB
AL450380.1	EMBL	pseudogene	710904	711810	.	-	.	ID=gene-qor;Name=qor;gbkey=Gene;gene=qor;gene_biotype=pseudogene;gene_synonym=ML0585;pseudo=true
AL450380.1	EMBL	CDS	710904	711810	.	-	0	ID=cds-qor;Parent=gene-qor;Note=Possible pseudogene of M. tuberculosis orthologue qor (Best blastx score 228);gbkey=CDS;gene=qor;product=Probable quinone oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	711832	712694	.	+	.	ID=gene-ML0586;Name=ML0586;gbkey=Gene;gene=ML0586;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	711832	712694	.	+	0	ID=cds-ML0586;Parent=gene-ML0586;Note=Possible pseudogene of M. tuberculosis orthologue Rv1455 (Best blastx score 414);gbkey=CDS;gene=ML0586;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	712668	713603	.	-	.	ID=gene-ML0587;Name=ML0587;gbkey=Gene;gene=ML0587;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	712668	713603	.	-	0	ID=cds-CAC30095.1;Parent=gene-ML0587;Dbxref=GOA:Q7AQI1,InterPro:IPR003780,UniProtKB/TrEMBL:Q7AQI1,NCBI_GP:CAC30095.1;Name=CAC30095.1;Note=Similar to M. tuberculosis Rv1456c%2C putative membrane protein%2C TR:O53148 (EMBL:AL123456) (310 aa)%3B Fasta score E(): 0%2C 83.3%25 identity in 300 aa overlap. Similar to bacterial hypothetical proteins e.g. Mycobacterium smegmatis fxtF%2C hypothetical protein%2C TR:O87318 (EMBL:AF027770) (236 aa)%3B Fasta score E(): 0%2C 67.5%25 identity in 228 aa overlap. Previously sequenced as TR:O33142 (EMBL:Z99125) (311 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 311 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0587;product=putative membrane protein;protein_id=CAC30095.1;transl_table=11
AL450380.1	EMBL	gene	713858	714100	.	+	.	ID=gene-ML0588;Name=ML0588;gbkey=Gene;gene=ML0588;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	713858	714100	.	+	0	ID=cds-CAC30096.1;Parent=gene-ML0588;Dbxref=UniProtKB/TrEMBL:Q7AQI0,NCBI_GP:CAC30096.1;Name=CAC30096.1;Note=Unknown function. Previously sequenced as TR:Q49686 (EMBL:U00013) (80 aa)%3B Fasta score E(): 0%2C 98.8%25 identity in 80 aa overlap.;gbkey=CDS;gene=ML0588;product=hypothetical protein;protein_id=CAC30096.1;transl_table=11
AL450380.1	EMBL	gene	714234	715031	.	-	.	ID=gene-ML0589;Name=ML0589;gbkey=Gene;gene=ML0589;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	714234	715031	.	-	0	ID=cds-CAC30097.1;Parent=gene-ML0589;Dbxref=GOA:Q7AQH9,InterPro:IPR000412,InterPro:IPR004377,UniProtKB/TrEMBL:Q7AQH9,NCBI_GP:CAC30097.1;Name=CAC30097.1;Note=Similar to M. tuberculosis Rv1457c%2C putative membrane protein%2C TR:O86349 (EMBL:AL123456) (261 aa)%3B Fasta score E(): 0%2C 83.1%25 identity in 260 aa overlap. Similar to bacterial hypothetical membrane proteins e.g. Mycobacterium smegmatis fxtE%2C hypothetical membrane protein%2C TR:O87317 (EMBL:AF027770) (236 aa)%3B Fasta score E(): 0%2C 77.1%25 identity in 236 aa overlap. Previously sequenced as TR:Q49703 (EMBL:U00013) (265 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 265 aa overlap. Contains hydrophobic%2C probable membrane-spanning regions.;gbkey=CDS;gene=ML0589;product=putative membrane protein;protein_id=CAC30097.1;transl_table=11
AL450380.1	EMBL	gene	715031	715978	.	-	.	ID=gene-ML0590;Name=ML0590;gbkey=Gene;gene=ML0590;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	715031	715978	.	-	0	ID=cds-CAC30098.1;Parent=gene-ML0590;Dbxref=GOA:Q7AQH8,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7AQH8,NCBI_GP:CAC30098.1;Name=CAC30098.1;Note=Similar to M. tuberculosis Rv1458c%2C ABC-transporter ATP-binding protein%2C TR:O53149 (EMBL:AL123456) (313 aa)%3B Fasta score E(): 0%2C 88.0%25 identity in 308 aa overlap. Similar to many e.g. Rhizobium sp. (strain NGR234). nodI%2C nodulation ATP-binding protein I%2C SW:NODI_RHISN (P55476) (343 aa)%3B Fasta score E(): 3.4e-28%2C 39.4%25 identity in 317 aa overlap. Previously sequenced as TR:Q49707 (EMBL:U00013) (315 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 315 aa overlap. Contains Pfam match to entry PF00005 ABC_tran%2C ABC transporter. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00211 ABC transporters family signature.;gbkey=CDS;gene=ML0590;product=putative ABC transporter ATP-binding protein;protein_id=CAC30098.1;transl_table=11
AL450380.1	EMBL	sequence_feature	715331	715861	.	-	.	ID=id-ML0590;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 168.90%2C E-value 8.6e-47;gbkey=misc_feature;gene=ML0590
AL450380.1	EMBL	sequence_feature	715514	715558	.	-	.	ID=id-ML0590-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=ML0590
AL450380.1	EMBL	sequence_feature	715817	715840	.	-	.	ID=id-ML0590-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML0590
AL450380.1	EMBL	ribosome_entry_site	715039	715045	.	-	.	ID=id-ML0590-4;Parent=gene-ML0590;Note=possible RBS;gbkey=regulatory;gene=ML0590;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	715975	717756	.	-	.	ID=gene-ML0591;Name=ML0591;gbkey=Gene;gene=ML0591;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	715975	717756	.	-	0	ID=cds-CAC30099.1;Parent=gene-ML0591;Dbxref=UniProtKB/TrEMBL:Q7AQH7,NCBI_GP:CAC30099.1;Name=CAC30099.1;Note=Similar to M. tuberculosis Rv1459c%2C conserved hypothetical protein%2C TR:O53150 (EMBL:AL123456) (591 aa)%3B Fasta score E(): 0%2C 78.6%25 identity in 585 aa overlap and to Rv2174%2C putative membrane protein%2C TR:O53508 (EMBL:AL123456) (516 aa)%3B Fasta score E(): 2.2e-26%2C 31.6%25 identity in 513 aa overlap. Previously sequenced as TR:Q49695 (EMBL:U00013) (593 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 593 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.%3B~Similar to ML0899;gbkey=CDS;gene=ML0591;product=putative membrane protein;protein_id=CAC30099.1;transl_table=11
AL450380.1	EMBL	gene	717872	718636	.	+	.	ID=gene-ML0592;Name=ML0592;gbkey=Gene;gene=ML0592;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	717872	718636	.	+	0	ID=cds-CAC30100.1;Parent=gene-ML0592;Dbxref=GOA:Q7AQH6,InterPro:IPR011991,UniProtKB/TrEMBL:Q7AQH6,NCBI_GP:CAC30100.1;Name=CAC30100.1;Note=Similar to M. tuberculosis Rv1460%2C hypothetical protein%2C TR:O53151 (EMBL:AL123456) (278 aa)%3B Fasta score E(): 0%2C 79.6%25 identity in 250 aa overlap. Similar to other bacterial hypothetical proteins e.g. Streptomyces coelicolor SCC22.08C%2C putative DNA-binding protein%2C TR:Q9XAD0 (EMBL:AL096839) (252 aa)%3B Fasta score E(): 5.6e-30%2C 45.4%25 identity in 216 aa overlap. Previously sequenced as TR:Q49688 (EMBL:U00013) (254 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 254 aa overlap. Contains a probable helix-turn-helix motif at aa 215-236 (Score 1054%2C SD +2.78);gbkey=CDS;gene=ML0592;product=putative DNA-binding protein;protein_id=CAC30100.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	718674	718681	.	+	.	ID=id-AL450380.1:718674..718681;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	718688	721297	.	+	.	ID=gene-ML0593;Name=ML0593;gbkey=Gene;gene=ML0593;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	718688	721297	.	+	0	ID=cds-CAC30101.1;Parent=gene-ML0593;Dbxref=GOA:Q49689,InterPro:IPR000825,InterPro:IPR003586,InterPro:IPR003587,InterPro:IPR004042,InterPro:IPR006141,InterPro:IPR006142,InterPro:IPR010231,InterPro:IPR027434,InterPro:IPR028992,NCBI_GP:CAC30101.1;Name=CAC30101.1;Note=Similar to M. tuberculosis Rv1461%2C hypothetical protein%2C SW:YE61_MYCTU (O53152) (846 aa)%3B Fasta score E(): 0%2C 54.3%25 identity in 920 aa overlap. N- and C-termini are similar to various bacterial hypothetical proteins e.g. Streptomyces coelicolor SCC22.07C%2C conserved hypothetical protein%2C TR:Q9XAD1 (EMBL:AL096839) (473 aa)%3B Fasta score E(): 0%2C 45.5%25 identity in 853 aa overlap. Contains an intein from amino acids 202-587 inclusive. The intein is different to the one in the M. tuberculosis orthologue and at a different relative position. Previously sequenced as SW:YE61_MYCLE (Q49689) (869 aa)%3B Fasta score E(): 0%2C 99.9%25 identity in 869 aa overlap. Contains Pfam match to entry PF01458 UPF0051%2C Uncharacterized protein family (UPF0051). Contains PS00881 Protein splicing signature.%3B~C-terminal half is similar to ML0594;gbkey=CDS;gene=ML0593;product=conserved hypothetical protein;protein_id=CAC30101.1;transl_table=11
AL450380.1	EMBL	sequence_feature	720428	720451	.	+	.	ID=id-ML0593;Note=PS00881 Protein splicing signature;gbkey=misc_feature;gene=ML0593
AL450380.1	EMBL	sequence_feature	720458	721219	.	+	.	ID=id-ML0593-2;Note=Pfam match to entry PF01458 UPF0051%2C Uncharacterized protein family (UPF0051)%2C score 503.40%2C E-value 1.7e-147;gbkey=misc_feature;gene=ML0593
AL450380.1	EMBL	ribosome_entry_site	721279	721283	.	+	.	ID=id-ML0593-3;Parent=gene-ML0593;Note=possible RBS;gbkey=regulatory;gene=ML0593;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	721294	722472	.	+	.	ID=gene-ML0594;Name=ML0594;gbkey=Gene;gene=ML0594;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	721294	722472	.	+	0	ID=cds-CAC30102.1;Parent=gene-ML0594;Dbxref=GOA:Q49682,InterPro:IPR000825,InterPro:IPR011542,NCBI_GP:CAC30102.1;Name=CAC30102.1;Note=Similar to M. tuberculosis Rv1462%2C conserved hypothetical protein%2C SW:YE62_MYCTU (O53153) (397 aa)%3B Fasta score E(): 0%2C 80.4%25 identity in 392 aa overlap. Similar to many bacterial hypothetical proteins e.g. Streptomyces coelicolor SCC22.06C%2C conserved hypothetical protein%2C TR:Q9XAD2 (EMBL:AL096839) (394 aa)%3B Fasta score E(): 0%2C 58.6%25 identity in 365 aa overlap. Previously sequenced as SW:YE62_MYCLE (Q49682) (392 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 392 aa overlap. Contains Pfam match to entry PF01458 UPF0051%2C Uncharacterized protein family (UPF0051).%3B~Similar to to the C-terminal half of ML0593;gbkey=CDS;gene=ML0594;product=conserved hypothetical protein;protein_id=CAC30102.1;transl_table=11
AL450380.1	EMBL	sequence_feature	721588	722376	.	+	.	ID=id-ML0594;Note=Pfam match to entry PF01458 UPF0051%2C Uncharacterized protein family (UPF0051)%2C score 370.50%2C E-value 1.7e-107;gbkey=misc_feature;gene=ML0594
AL450380.1	EMBL	gene	722469	723251	.	+	.	ID=gene-ML0595;Name=ML0595;gbkey=Gene;gene=ML0595;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	722469	723251	.	+	0	ID=cds-CAC30103.1;Parent=gene-ML0595;Dbxref=GOA:Q7AQH5,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR010230,InterPro:IPR027417,UniProtKB/TrEMBL:Q7AQH5,NCBI_GP:CAC30103.1;Name=CAC30103.1;Note=Similar to M. tuberculosis Rv1463%2C putative ABC transporter ATP-binding protein%2C TR:O53154 (EMBL:AL123456) (266 aa)%3B Fasta score E(): 0%2C 85.8%25 identity in 267 aa overlap. Similar to many members of the ABC transporter family%2C including members found in chloroplast genomes e.g. Cyanophora paradoxa ycf16%2C probable ATP-dependent transporter%2C SW:ABCX_CYAPA (P48255) (259 aa)%3B Fasta score E(): 0%2C 54.2%25 identity in 227 aa overlap. Previously sequenced as TR:Q49693 (EMBL:U00013) (260 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 260 aa overlap. Contains Pfam match to entry PF00005 ABC_tran%2C ABC transporter. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML0595;product=putative ABC transporter ATP-binding protein;protein_id=CAC30103.1;transl_table=11
AL450380.1	EMBL	sequence_feature	722580	723158	.	+	.	ID=id-ML0595;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 89.10%2C E-value 9e-23;gbkey=misc_feature;gene=ML0595
AL450380.1	EMBL	sequence_feature	722601	722624	.	+	.	ID=id-ML0595-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML0595
AL450380.1	EMBL	ribosome_entry_site	723243	723246	.	+	.	ID=id-ML0595-3;Parent=gene-ML0595;Note=possible RBS;gbkey=regulatory;gene=ML0595;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	723254	724510	.	+	.	ID=gene-ML0596;Name=ML0596;gbkey=Gene;gene=ML0596;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	723254	724510	.	+	0	ID=cds-CAC30104.1;Parent=gene-ML0596;Dbxref=GOA:Q49690,InterPro:IPR000192,InterPro:IPR010970,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR020578,NCBI_GP:CAC30104.1;Name=CAC30104.1;Note=Similar to M. tuberculosis Rv1464%2C NifS-like protein%2C TR:O53155 (EMBL:AL123456) (417 aa)%3B Fasta score E(): 0%2C 85.4%25 identity in 417 aa overlap. Similar to many putative aminotransferases and to Anabaena sp. (strain PCC 7120) nifS%2C SW:NIFS_ANASP (P12623) (621 aa)%3B BlastP Expect 9.9. Previously sequenced as TR:Q49690 (EMBL:U00013) (418 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 418 aa overlap. Contains Pfam match to entry PF00266 aminotran_5%2C Aminotransferases class-V. Contains PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site.%3B~Similar to part of ML0842 and to ML0117 and ML1708;gbkey=CDS;gene=ML0596;product=putative aminotransferase;protein_id=CAC30104.1;transl_table=11
AL450380.1	EMBL	sequence_feature	723374	724465	.	+	.	ID=id-ML0596;Note=Pfam match to entry PF00266 aminotran_5%2C Aminotransferases class-V%2C score 5.00%2C E-value 1.6e-07;gbkey=misc_feature;gene=ML0596
AL450380.1	EMBL	sequence_feature	723926	723985	.	+	.	ID=id-ML0596-2;Note=PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site;gbkey=misc_feature;gene=ML0596
AL450380.1	EMBL	ribosome_entry_site	724500	724503	.	+	.	ID=id-ML0596-3;Parent=gene-ML0596;Note=possible RBS;gbkey=regulatory;gene=ML0596;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	724507	725004	.	+	.	ID=gene-ML0597;Name=ML0597;gbkey=Gene;gene=ML0597;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	724507	725004	.	+	0	ID=cds-CAC30105.1;Parent=gene-ML0597;Dbxref=GOA:Q7AQH4,InterPro:IPR002871,UniProtKB/TrEMBL:Q7AQH4,NCBI_GP:CAC30105.1;Name=CAC30105.1;Note=Similar to M. tuberculosis Rv1465%2C conserved hypothetical protein%2C TR:O53156 (EMBL:AL123456) (162 aa)%3B Fasta score E(): 0%2C 79.4%25 identity in 165 aa overlap. Similar to many hypothetical proteins and shows very weak similarity to proteins from N-fixation loci e.g. Anabaena azollae nifU%2C nitrogen fixation protein%2C SW:NIFU_ANAAZ (Q43885) (300 aa)%3B Fasta score E(): 1.9%2C 24.4%25 identity in 90 aa overlap. Previously sequenced as TR:Q49683 (EMBL:U00013) (165 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 165 aa overlap. Contains Pfam match to entry PF01883 DUF59%2C Domain of unknown function. Contains Pfam match to entry PF01592 NifU_N%2C NifU-like N terminal domain.;gbkey=CDS;gene=ML0597;product=conserved hypothetical protein;protein_id=CAC30105.1;transl_table=11
AL450380.1	EMBL	sequence_feature	724528	724902	.	+	.	ID=id-ML0597;Note=Pfam match to entry PF01592 NifU_N%2C NifU-like N terminal domain%2C score 152.10%2C E-value 9.8e-42;gbkey=misc_feature;gene=ML0597
AL450380.1	EMBL	ribosome_entry_site	724967	724973	.	+	.	ID=id-ML0597-2;Parent=gene-ML0597;Note=possible RBS;gbkey=regulatory;gene=ML0597;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	724979	725326	.	+	.	ID=gene-ML0598;Name=ML0598;gbkey=Gene;gene=ML0598;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	724979	725326	.	+	0	ID=cds-CAC30106.1;Parent=gene-ML0598;Dbxref=InterPro:IPR002744,UniProtKB/TrEMBL:Q7AQH3,NCBI_GP:CAC30106.1;Name=CAC30106.1;Note=Similar to M. tuberculosis Rv1466%2C conserved hypothetical protein%2C TR:O53157 (EMBL:AL123456) (115 aa)%3B Fasta score E(): 0%2C 82.6%25 identity in 115 aa overlap. Similar to hypothetical proteins located downstream of sigma factor genes in both Streptococcus spp. Previously sequenced as TR:Q49691 (EMBL:U00013) (115 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 115 aa overlap. Contains Pfam match to entry PF01883 DUF59%2C Domain of unknown function.;gbkey=CDS;gene=ML0598;product=conserved hypothetical protein;protein_id=CAC30106.1;transl_table=11
AL450380.1	EMBL	sequence_feature	724985	725296	.	+	.	ID=id-ML0598;Note=Pfam match to entry PF01883 DUF59%2C Domain of unknown function%2C score 69.30%2C E-value 7.9e-17;gbkey=misc_feature;gene=ML0598
AL450380.1	EMBL	pseudogene	725440	727009	.	-	.	ID=gene-fadE15;Name=fadE15;gbkey=Gene;gene=fadE15;gene_biotype=pseudogene;gene_synonym=ML0599;pseudo=true
AL450380.1	EMBL	CDS	725440	727009	.	-	0	ID=cds-fadE15;Parent=gene-fadE15;Note=Possible pseudogene of M. tuberculosis orthologue fadE15 (Best blastx score 267);gbkey=CDS;gene=fadE15;product=acyl-CoA dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	727200	728460	.	+	.	ID=id-AL450380.1:727200..728460;Note=LEPRPT%2C copy 2%2C 1261 bp;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	728399	728459	.	+	.	ID=id-AL450380.1:728399..728459;Note=61 bp repeat found at 3'-end of LEPRPT and situated 5' to some copies of REPLEP;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	728495	728946	.	+	.	ID=id-AL450380.1:728495..728946;Note=REPLEP region 4%2C 3'-end most similar to REPLEP 1%2C 5 and 6;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	728495	728901	.	+	.	ID=id-AL450380.1:728495..728901;Note=Dispersed repeat%2C REPLEP%2C copy 4%2C truncated at 5'-end;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	728902	728946	.	+	.	ID=id-AL450380.1:728902..728946;Note=45 bp REPLEP-associated sequence;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	731675	732618	.	-	.	ID=gene-ML0600;Name=ML0600;gbkey=Gene;gene=ML0600;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	731675	732618	.	-	0	ID=cds-ML0600;Parent=gene-ML0600;Note=Possible pseudogene of an acyl-CoA dehydrogenase homolgous to those in M. tuberculosis (Best blastx score 114);gbkey=CDS;gene=ML0600;product=acyl-CoA dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	733140	733879	.	+	.	ID=gene-ML0601;Name=ML0601;gbkey=Gene;gene=ML0601;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	733140	733879	.	+	0	ID=cds-ML0601;Parent=gene-ML0601;Note=Possible pseudogene of M. tuberculosis orthologue Rv2415c (Best blastx score 191);gbkey=CDS;gene=ML0601;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	733927	734848	.	+	.	ID=gene-ML0602;Name=ML0602;gbkey=Gene;gene=ML0602;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	733927	734848	.	+	0	ID=cds-ML0602;Parent=gene-ML0602;Note=Possible pseudogene of M. tuberculosis orthologue Rv2414c (Best blastx score 167);gbkey=CDS;gene=ML0602;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	735002	736117	.	+	.	ID=gene-ML0603;Name=ML0603;gbkey=Gene;gene=ML0603;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	735002	736117	.	+	0	ID=cds-CAC30111.1;Parent=gene-ML0603;Dbxref=GOA:Q7AQH2,InterPro:IPR008921,InterPro:IPR010372,InterPro:IPR027417,UniProtKB/TrEMBL:Q7AQH2,NCBI_GP:CAC30111.1;Name=CAC30111.1;Note=Similar to M. tuberculosis Rv2413c%2C conserved hypothetical protein%2C TR:P71730 (EMBL:AL123456) (316 aa)%3B Fasta score E(): 0%2C 83.5%25 identity in 316 aa overlap. Also similar to Streptomyces coelicolor SCC123.02C%2C putative DNA-binding protein%2C TR:Q9RDM2 (EMBL:AL136518) (336 aa)%3B Fasta score E(): 0%2C 39.3%25 identity in 326 aa overlap. Previously sequenced as TR:Q49756 (EMBL:U00016) (389 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 371 aa overlap. Contains a possible N-terminal signal sequence. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=ML0603;product=putative lipoprotein;protein_id=CAC30111.1;transl_table=11
AL450380.1	EMBL	sequence_feature	735035	735067	.	+	.	ID=id-ML0603;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=ML0603
AL450380.1	EMBL	gene	736154	736414	.	-	.	ID=gene-rpsT;Name=rpsT;gbkey=Gene;gene=rpsT;gene_biotype=protein_coding;gene_synonym=ML0604
AL450380.1	EMBL	CDS	736154	736414	.	-	0	ID=cds-CAC30112.1;Parent=gene-rpsT;Dbxref=GOA:O33132,InterPro:IPR002583,NCBI_GP:CAC30112.1;Name=CAC30112.1;Note=Similar to M. tuberculosis rpsT%2C 30S ribosomal protein S20%2C SW:RS20_MYCTU (P71731) (86 aa)%3B Fasta score E(): 8.8e-27%2C 87.2%25 identity in 86 aa overlap. Similar to many e.g. Escherichia coli rpsT%2C 30S ribosomal protein S20%2C SW:RS20_ECOLI (P02378) (86 aa)%3B Fasta score E(): 1.5e-08%2C 41.7%25 identity in 84 aa overlap. Previously sequenced as SW:RS20_MYCLE (O33132) (86 aa)%3B Fasta score E(): 2.1e-30%2C 98.8%25 identity in 86 aa overlap. Contains Pfam match to entry PF01649 Ribosomal_S20p%2C Ribosomal protein S20.;gbkey=CDS;gene=rpsT;product=30S ribosomal protein S20;protein_id=CAC30112.1;transl_table=11
AL450380.1	EMBL	sequence_feature	736160	736411	.	-	.	ID=id-rpsT;Note=Pfam match to entry PF01649 Ribosomal_S20p%2C Ribosomal protein S20%2C score 151.30%2C E-value 1.7e-41;gbkey=misc_feature;gene=rpsT
AL450380.1	EMBL	ribosome_entry_site	736424	736429	.	-	.	ID=id-AL450380.1:736424..736429;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	ribosome_entry_site	736541	736544	.	+	.	ID=id-AL450380.1:736541..736544;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	736549	738234	.	+	.	ID=gene-ML0605;Name=ML0605;gbkey=Gene;gene=ML0605;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	736549	738234	.	+	0	ID=cds-CAC30113.1;Parent=gene-ML0605;Dbxref=InterPro:IPR007302,InterPro:IPR016450,NCBI_GP:CAC30113.1;Name=CAC30113.1;Note=Similar to M. tuberculosis Rv2411c%2C conserved hypothetical protein%2C SW:YO11_MYCTU (P71732) (551 aa)%3B Fasta score E(): 0%2C 87.4%25 identity in 554 aa overlap. Similar to other bacterial hypothetical proteins. This CDS and the downstream CDS are also similar to the N- and C-terminal regions respectively%2C of longer hypothetical proteins from M. tuberculosis and M. leprae e.g. M. tuberculosis Rv2567%2C SW:YP67_MYCTU (Q50654) (884 aa)%3B Fasta score E(): 0%2C 32.2%25 identity in 537 aa overlap. Contains a Gln-rich region at the C-terminus. Previously sequnced as SW:YO11_MYCLE (Q49755) (561 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 561 aa overlap.%3B~Similar to the N-terminal region of ML2679;gbkey=CDS;gene=ML0605;product=conserved hypothetical protein;protein_id=CAC30113.1;transl_table=11
AL450380.1	EMBL	gene	738234	739211	.	+	.	ID=gene-ML0606;Name=ML0606;gbkey=Gene;gene=ML0606;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	738234	739211	.	+	0	ID=cds-CAC30114.1;Parent=gene-ML0606;Dbxref=InterPro:IPR007296,UniProtKB/TrEMBL:Q49770,NCBI_GP:CAC30114.1;Name=CAC30114.1;Note=Similar to M. tuberculosis Rv2410c%2C conserved hypothetical protein%2C TR:P71733 (EMBL:AL123456) (325 aa)%3B Fasta score E(): 0%2C 90.8%25 identity in 325 aa overlap. Similar to other bacterial hypothetical proteins. This CDS and the upstream CDS are also similar to the C- and N-terminal regions respectively%2C of longer hypothetical proteins from M. tuberculosis and M. leprae e.g. M. tuberculosis Rv2567%2C SW:YP67_MYCTU. Previously sequnced as TR:Q49770 (EMBL:U00016) (325 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 325 aa overlap.%3B~Similar to the C-terminal region of ML2679;gbkey=CDS;gene=ML0606;product=conserved hypothetical protein;protein_id=CAC30114.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	739200	739203	.	+	.	ID=id-ML0606;Parent=gene-ML0606;Note=possible RBS;gbkey=regulatory;gene=ML0606;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	739211	740050	.	+	.	ID=gene-ML0607;Name=ML0607;gbkey=Gene;gene=ML0607;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	739211	740050	.	+	0	ID=cds-CAC30115.1;Parent=gene-ML0607;Dbxref=InterPro:IPR002931,InterPro:IPR013589,NCBI_GP:CAC30115.1;Name=CAC30115.1;Note=Similar to M. tuberculosis Rv2409c%2C conserved hypothetical protein%2C TR:P71734 (EMBL:AL123456) (279 aa)%3B Fasta score E(): 0%2C 82.1%25 identity in 279 aa overlap and to Rv2569c%2C hypothetical protein%2C SW:YP69_MYCTU (Q50652) (314 aa)%3B Fasta score E(): 4.1e-13%2C 33.0%25 identity in 300 aa overlap. Similar to other bacterial hypothetical proteins e.g. Deinococcus radiodurans DR1993%2C conserved hypothetical protein%2C TR:Q9RSX6 (EMBL:AE002037) (274 aa)%3B Fasta score E(): 8.2e-25%2C 33.6%25 identity in 280 aa overlap. Previously sequnced as SW:YP69_MYCLE (U00016) (279 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 279 aa overlap. Contains Pfam match to entry PF01841 Transglut_core%2C Transglutaminase-like superfamily.%3B~Similar to ML0508;gbkey=CDS;gene=ML0607;product=conserved hypothetical protein;protein_id=CAC30115.1;transl_table=11
AL450380.1	EMBL	sequence_feature	739718	739909	.	+	.	ID=id-ML0607;Note=Pfam match to entry PF01841 Transglut_core%2C Transglutaminase-like superfamily%2C score 78.40%2C E-value 1.4e-19;gbkey=misc_feature;gene=ML0607
AL450380.1	EMBL	pseudogene	740723	741531	.	-	.	ID=gene-ML0608;Name=ML0608;gbkey=Gene;gene=ML0608;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	740723	741531	.	-	0	ID=cds-ML0608;Parent=gene-ML0608;Note=Possible pseudogene of M. tuberculosis orthologue Rv2407 (Best blastx score 558);gbkey=CDS;gene=ML0608;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	741778	741991	.	+	.	ID=gene-ML0609;Name=ML0609;gbkey=Gene;gene=ML0609;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	741778	741991	.	+	0	ID=cds-ML0609;Parent=gene-ML0609;Note=Possible pseudogene of M. tuberculosis orthologue Rv2406c (Best blastx score 134);gbkey=CDS;gene=ML0609;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	742052	742614	.	-	.	ID=gene-ML0610;Name=ML0610;gbkey=Gene;gene=ML0610;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	742052	742614	.	-	0	ID=cds-ML0610;Parent=gene-ML0610;Note=Possible pseudogene of M. tuberculosis orthologue Rv2405 (Best blastx score 219);gbkey=CDS;gene=ML0610;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	742716	744656	.	+	.	ID=gene-lepA;Name=lepA;gbkey=Gene;gene=lepA;gene_biotype=protein_coding;gene_synonym=ML0611
AL450380.1	EMBL	CDS	742716	744656	.	+	0	ID=cds-CAC30119.1;Parent=gene-lepA;Dbxref=GOA:P53530,InterPro:IPR000640,InterPro:IPR000795,InterPro:IPR005225,InterPro:IPR006297,InterPro:IPR009000,InterPro:IPR009022,InterPro:IPR013842,InterPro:IPR027417,NCBI_GP:CAC30119.1;Name=CAC30119.1;Note=Similar to M. tuberculosis lepA%2C Rv2404c%2C putative GTP-binding protein%2C SW:LEPA_MYCTU (P71739) (653 aa)%3B Fasta score E(): 0%2C 88.0%25 identity in 649 aa overlap. Similar to many e.g. Bacillus subtilis lepA%2C GTP-binding protein%2C SW:LEPA_BACSU (P37949) (612 aa)%3B Fasta score E(): 0%2C 56.8%25 identity in 613 aa overlap. Previously sequenced as SW:LEPA_MYCLE (P53530) (646 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 646 aa overlap. Contains Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family. Contains PS00301 GTP-binding elongation factors signature. Contains PS00017 ATP/GTP-binding site motif A (P-loop).%3B~Show weak imilarity to ML1498%2C ML1877 and ML1878;gbkey=CDS;gene=lepA;product=putative GTP-binding protein;protein_id=CAC30119.1;transl_table=11
AL450380.1	EMBL	sequence_feature	742839	743975	.	+	.	ID=id-lepA;Note=Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family%2C score 325.50%2C E-value 6.1e-94;gbkey=misc_feature;gene=lepA
AL450380.1	EMBL	sequence_feature	742866	742889	.	+	.	ID=id-lepA-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=lepA
AL450380.1	EMBL	sequence_feature	742959	743006	.	+	.	ID=id-lepA-3;Note=PS00301 GTP-binding elongation factors signature;gbkey=misc_feature;gene=lepA
AL450380.1	EMBL	pseudogene	744738	746654	.	-	.	ID=gene-ML0612;Name=ML0612;gbkey=Gene;gene=ML0612;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	744738	746654	.	-	0	ID=cds-ML0612;Parent=gene-ML0612;Note=Possible pseudogene of M. tuberculosis orthologue Rv2402 (Best blastx score 1589);gbkey=CDS;gene=ML0612;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	746875	747774	.	-	.	ID=gene-ML0613;Name=ML0613;gbkey=Gene;gene=ML0613;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	746875	747774	.	-	0	ID=cds-ML0613;Parent=gene-ML0613;Note=Possible pseudogene similar to M. tuberculosis Rv1751 (Best blastx score 134);gbkey=CDS;gene=ML0613;product=possible hydroxylase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	747777	748064	.	+	.	ID=gene-ML0614;Name=ML0614;gbkey=Gene;gene=ML0614;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	747777	748064	.	+	0	ID=cds-CAC30122.1;Parent=gene-ML0614;Dbxref=GOA:Q49760,NCBI_GP:CAC30122.1;Name=CAC30122.1;Note=Unknown function. Previously sequenced as TR:Q49760 (EMBL:U00016) (95 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 95 aa overlap.;gbkey=CDS;gene=ML0614;product=hypothetical protein;protein_id=CAC30122.1;transl_table=11
AL450380.1	EMBL	gene	748382	749428	.	+	.	ID=gene-subI;Name=subI;gbkey=Gene;gene=subI;gene_biotype=protein_coding;gene_synonym=ML0615
AL450380.1	EMBL	CDS	748382	749428	.	+	0	ID=cds-CAC30123.1;Parent=gene-subI;Dbxref=GOA:Q9CCN3,InterPro:IPR005669,UniProtKB/TrEMBL:Q9CCN3,NCBI_GP:CAC30123.1;Name=CAC30123.1;Note=Similar to M. tuberculosis subI%2C Rv2400c%2C putative sulphate binding protein%2C TR:P71744 (EMBL:AL123456) (356 aa)%3B Fasta score E(): 0%2C 76.5%25 identity in 340 aa overlap. Similar to many e.g. Escherichia coli sbp%2C sulfate-binding protein precursor%2C SW:SUBI_ECOLI (P06997) (329 aa)%3B Fasta score E(): 1.2e-28%2C 35.7%25 identity in 291 aa overlap. Previously sequenced as TR:Q49748 (EMBL:U00016) (358 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 348 aa overlap. Contains Pfam match to entry PF01100 Sulphate_bind%2C Prokaryotic sulphate- and thiosulphate-binding protein.;gbkey=CDS;gene=subI;product=putative sulphate-binding protein;protein_id=CAC30123.1;transl_table=11
AL450380.1	EMBL	sequence_feature	748406	749416	.	+	.	ID=id-subI;Note=Pfam match to entry PF01100 Sulphate_bind%2C Prokaryotic sulphate- and thiosulphate-binding protein%2C score 211.20%2C E-value 1.6e-59;gbkey=misc_feature;gene=subI
AL450380.1	EMBL	pseudogene	749509	750255	.	+	.	ID=gene-cysT;Name=cysT;gbkey=Gene;gene=cysT;gene_biotype=pseudogene;gene_synonym=ML0616;pseudo=true
AL450380.1	EMBL	CDS	749509	750255	.	+	0	ID=cds-cysT;Parent=gene-cysT;Note=Possible pseudogene of M. tuberculosis orthologue cysT (Best blastx score 386);gbkey=CDS;gene=cysT;product=sulphate transport system permease protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	750258	750925	.	+	.	ID=gene-cysW;Name=cysW;gbkey=Gene;gene=cysW;gene_biotype=pseudogene;gene_synonym=ML0617;pseudo=true
AL450380.1	EMBL	CDS	750258	750925	.	+	0	ID=cds-cysW;Parent=gene-cysW;Note=Possible pseudogene of M. tuberculosis orthologue cysW (Best blastx score 281);gbkey=CDS;gene=cysW;product=sulphate transport system permease protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	751047	751488	.	+	.	ID=gene-cysA;Name=cysA;gbkey=Gene;gene=cysA;gene_biotype=pseudogene;gene_synonym=ML0618;pseudo=true
AL450380.1	EMBL	CDS	751047	751488	.	+	0	ID=cds-cysA;Parent=gene-cysA;Note=Possible pseudogene of M. tuberculosis orthologue cysA (Best blastx score 153);gbkey=CDS;gene=cysA;product=sulphate transport ATP-binding protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	751913	752428	.	-	.	ID=gene-ML0619;Name=ML0619;gbkey=Gene;gene=ML0619;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	751913	752428	.	-	0	ID=cds-ML0619;Parent=gene-ML0619;Note=Possible pseudogene of M. tuberculosis orthologue Rv2387 (Best blastx score 213);gbkey=CDS;gene=ML0619;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	753532	754035	.	+	.	ID=gene-mtb12;Name=mtb12;gbkey=Gene;gene=mtb12;gene_biotype=protein_coding;gene_synonym=ML0620
AL450380.1	EMBL	CDS	753532	754035	.	+	0	ID=cds-CAC30128.1;Parent=gene-mtb12;Dbxref=GOA:Q49771,InterPro:IPR020235,NCBI_GP:CAC30128.1;Name=CAC30128.1;Note=Similar to M. tuberculosis mtb12%2C Rv2376c%2C low molecular weight antigen%2C SW:MB12_MYCTU (O05822) (168 aa)%3B Fasta score E(): 0%2C 65.5%25 identity in 165 aa overlap. Previously sequenced as SW:MB12_MYCLE (Q49771) (165 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 165 aa overlap. M. tuberculosis mtb12 is secreted%2C therefore this protein may also be secreted.;gbkey=CDS;gene=mtb12;product=putative secreted protein;protein_id=CAC30128.1;transl_table=11
AL450380.1	EMBL	pseudogene	754090	754773	.	-	.	ID=gene-ML0621;Name=ML0621;gbkey=Gene;gene=ML0621;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	754090	754773	.	-	0	ID=cds-ML0621;Parent=gene-ML0621;Note=Possible pseudogene of gene similar to M. tuberculosis sigI gene (Best blastx score 110);gbkey=CDS;gene=ML0621;product=ECF family sigma factor (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	754310	754472	.	-	.	ID=id-ML0621;Note=163 bp repeat%2C 96%25 identical to region 982996..983158;gbkey=repeat_region;gene=ML0621;pseudo=true
AL450380.1	EMBL	pseudogene	754965	755390	.	-	.	ID=gene-ML0622;Name=ML0622;gbkey=Gene;gene=ML0622;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	754965	755390	.	-	0	ID=cds-ML0622;Parent=gene-ML0622;Note=Possible pseudogene of M. tuberculosis orthologue Rv3327 (Best blastx score 106);gbkey=CDS;gene=ML0622;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	755666	755984	.	-	.	ID=gene-ML0623;Name=ML0623;gbkey=Gene;gene=ML0623;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	755666	755984	.	-	0	ID=cds-ML0623;Parent=gene-ML0623;Note=Possible pseudogene of M. tuberculosis orthologue Rv2375 (Best blastx score 230);gbkey=CDS;gene=ML0623;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	756753	756761	.	+	.	ID=id-AL450380.1:756753..756761;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	756770	757801	.	+	.	ID=gene-hrcA;Name=hrcA;gbkey=Gene;gene=hrcA;gene_biotype=protein_coding;gene_synonym=ML0624
AL450380.1	EMBL	CDS	756770	757801	.	+	0	ID=cds-CAC30132.1;Parent=gene-hrcA;Dbxref=GOA:Q9CCN2,InterPro:IPR002571,InterPro:IPR011991,InterPro:IPR021153,InterPro:IPR029016,NCBI_GP:CAC30132.1;Name=CAC30132.1;Note=Similar to M. tuberculosis hrcA%2C Rv2374c%2C heat-inducible transcription repressor%2C SW:HRCA_MYCTU (O05824) (343 aa)%3B Fasta score E(): 0%2C 89.5%25 identity in 343 aa overlap. Similar to many e.g. Bacillus stearothermophilus%2C hcrA%2C heat-inducible transcription repressor%2C SW:HRCA_BACST (Q45550) (344 aa)%3B Fasta score E(): 3.5e-26%2C 28.3%25 identity in 336 aa overlap. Previously sequenced as TR:Q49749 (EMBL:U00016) (197 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 196 aa overlap. Contains Pfam match to entry PF01628 HrcA%2C HrcA protein.;gbkey=CDS;gene=hrcA;product=putative heat-inducible transcription repressor;protein_id=CAC30132.1;transl_table=11
AL450380.1	EMBL	sequence_feature	756776	757768	.	+	.	ID=id-hrcA;Note=Pfam match to entry PF01628 HrcA%2C HrcA protein%2C score 472.40%2C E-value 3.6e-138;gbkey=misc_feature;gene=hrcA
AL450380.1	EMBL	ribosome_entry_site	757860	757865	.	+	.	ID=id-AL450380.1:757860..757865;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	757873	759009	.	+	.	ID=gene-dnaJ2;Name=dnaJ2;gbkey=Gene;gene=dnaJ2;gene_biotype=protein_coding;gene_synonym=ML0625
AL450380.1	EMBL	CDS	757873	759009	.	+	0	ID=cds-CAC30133.1;Parent=gene-dnaJ2;Dbxref=GOA:Q49762,InterPro:IPR001305,InterPro:IPR001623,InterPro:IPR002939,InterPro:IPR008971,InterPro:IPR012724,NCBI_GP:CAC30133.1;Name=CAC30133.1;Note=Similar to M. tuberculosis dnaJ2%2C Rv2373c%2C DnaJ2 protein%2C TR:O05825 (EMBL:AL123456) (382 aa)%3B Fasta score E(): 0%2C 88.0%25 identity in 382 aa overlap. Similar to many e.g. Escherichia coli dnaJ%2C Dna protein%2C SW:DNAJ_ECOLI (P08622) (375 aa)%3B Fasta score E(): 0%2C 40.6%25 identity in 382 aa overlap. Previously sequenced as TR:Q49762 (EMBL:U00016) (378 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 378 aa overlap. Contains Pfam match to entry PF01556 DnaJ_C%2C DnaJ C terminal region. Contains Pfam match to entry PF00684 DnaJ_CXXCXGXG%2C DnaJ central domain (4 repeats). Contains Pfam match to entry PF00226 DnaJ%2C DnaJ domain.%3B~Similar to ML2494;gbkey=CDS;gene=dnaJ2;product=DnaJ homologue;protein_id=CAC30133.1;transl_table=11
AL450380.1	EMBL	sequence_feature	757882	758076	.	+	.	ID=id-dnaJ2;Note=Pfam match to entry PF00226 DnaJ%2C DnaJ domain%2C score 131.40%2C E-value 1.6e-35;gbkey=misc_feature;gene=dnaJ2
AL450380.1	EMBL	sequence_feature	758254	758508	.	+	.	ID=id-dnaJ2-2;Note=Pfam match to entry PF00684 DnaJ_CXXCXGXG%2C DnaJ central domain (4 repeats)%2C score 70.80%2C E-value 2.9e-17;gbkey=misc_feature;gene=dnaJ2
AL450380.1	EMBL	sequence_feature	758545	758913	.	+	.	ID=id-dnaJ2-3;Note=Pfam match to entry PF01556 DnaJ_C%2C DnaJ C terminal region%2C score 229.20%2C E-value 6.1e-65;gbkey=misc_feature;gene=dnaJ2
AL450380.1	EMBL	gene	759041	759814	.	+	.	ID=gene-ML0626;Name=ML0626;gbkey=Gene;gene=ML0626;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	759041	759814	.	+	0	ID=cds-CAC30134.1;Parent=gene-ML0626;Dbxref=GOA:Q9CCN1,InterPro:IPR006700,InterPro:IPR015947,InterPro:IPR029026,InterPro:IPR029028,UniProtKB/TrEMBL:Q9CCN1,NCBI_GP:CAC30134.1;Name=CAC30134.1;Note=Similar to M. tuberculosis Rv2372c%2C conserved hypothetical protein%2C TR:O05826 (EMBL:AL123456) (262 aa)%3B Fasta score E(): 0%2C 76.9%25 identity in 255 aa overlap. Similar to many bascterial hypothetical proteins e.g. Streptomyces coelicolor sdrD%2C hypothetical protein%2C TR:Q9S3Y4 (EMBL:AF170561) (216 aa)%3B Fasta score E(): 1.2e-28%2C 44.8%25 identity in 223 aa overlap. Previously sequenced as TR:Q49763 (EMBL:U00016) (128 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 126 aa overlap.;gbkey=CDS;gene=ML0626;product=conserved hypothetical protein;protein_id=CAC30134.1;transl_table=11
AL450380.1	EMBL	gene	760114	761163	.	+	.	ID=gene-phoH;Name=phoH;gbkey=Gene;gene=phoH;gene_biotype=protein_coding;gene_synonym=ML0627
AL450380.1	EMBL	CDS	760114	761163	.	+	0	ID=cds-CAC30135.1;Parent=gene-phoH;Dbxref=GOA:Q49751,InterPro:IPR003714,InterPro:IPR004087,InterPro:IPR004088,InterPro:IPR027417,NCBI_GP:CAC30135.1;Name=CAC30135.1;Note=Similar to M. tuberculosis phoH%2C Rv2372c%2C phoH-family protein%2C SW:PHOL_MYCTU (O05830) (352 aa)%3B Fasta score E(): 0%2C 88.9%25 identity in 352 aa overlap. Similar to many hypothetical proteins and to Escherichia coli phoH%2C phosphate starvation-inducible protein%2C SW:PHOH_ECOLI (P31544) (354 aa)%3B Fasta score E(): 1.2e-29%2C 36.8%25 identity in 304 aa overlap. Previously sequenced as SW:PHOL_MYCLE (Q49751) (349 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 349 aa overlap. Contains PS00017 ATP/GTP-binding site motif A (P-loop).%3B~Similar to ML1951%2C except and N- and C-termini;gbkey=CDS;gene=phoH;product=phoH-family protein;protein_id=CAC30135.1;transl_table=11
AL450380.1	EMBL	sequence_feature	760552	760575	.	+	.	ID=id-phoH;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=phoH
AL450380.1	EMBL	gene	761194	761730	.	+	.	ID=gene-ML0628;Name=ML0628;gbkey=Gene;gene=ML0628;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	761194	761730	.	+	0	ID=cds-CAC30136.1;Parent=gene-ML0628;Dbxref=GOA:Q49752,InterPro:IPR002036,InterPro:IPR020549,InterPro:IPR023091,NCBI_GP:CAC30136.1;Name=CAC30136.1;Note=Similar to M. tuberculosis Rv2367c%2C hypothetical protein%2C SW:YN67_MYCTU (O05831) (182 aa)%3B Fasta score E(): 0%2C 89.1%25 identity in 175 aa overlap. Similar to many bacterial hypothetical proteins e.g. Streptomyces coelicolor SCC117.06%2C hypothetical protein%2C TR:CAB66427 (EMBL:AL136534) (165 aa)%3B Fasta score E(): 1e-31%2C 54.5%25 identity in 154 aa overlap. Similar to Streptococcus mutans dgk%2C diacyglycerol kinase%2C TR:O51806 (EMBL:AF000954) (164 aa)%3B Fasta score E(): 3.8e-07%2C 30.9%25 identity in 162 aa overlap. Previously sequenced as SW:YN67_MYCLE (Q49752) (178 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 178 aa overlap. Contains Pfam match to entry PF02130 UPF0054%2C Uncharacterized protein family UPF0054. Contains PS01306 Uncharacterized protein family UPF0054 signature.;gbkey=CDS;gene=ML0628;product=conserved hypothetical protein;protein_id=CAC30136.1;transl_table=11
AL450380.1	EMBL	sequence_feature	761311	761631	.	+	.	ID=id-ML0628;Note=Pfam match to entry PF02130 UPF0054%2C Uncharacterized protein family UPF0054%2C score 235.30%2C E-value 8.7e-67;gbkey=misc_feature;gene=ML0628
AL450380.1	EMBL	sequence_feature	761545	761577	.	+	.	ID=id-ML0628-2;Note=PS01306 Uncharacterized protein family UPF0054 signature;gbkey=misc_feature;gene=ML0628
AL450380.1	EMBL	pseudogene	761727	763012	.	+	.	ID=gene-ML0629;Name=ML0629;gbkey=Gene;gene=ML0629;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	761727	763012	.	+	0	ID=cds-ML0629;Parent=gene-ML0629;Note=Possible pseudogene of M. tuberculosis orthologue Rv2366c (Best blastx score 651);gbkey=CDS;gene=ML0629;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	763019	763023	.	+	.	ID=id-AL450380.1:763019..763023;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	763032	763358	.	+	.	ID=gene-ML0630;Name=ML0630;gbkey=Gene;gene=ML0630;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	763032	763358	.	+	0	ID=cds-CAC30138.1;Parent=gene-ML0630;Dbxref=UniProtKB/TrEMBL:Q49767,NCBI_GP:CAC30138.1;Name=CAC30138.1;Note=Similar to M. tuberculosis Rv2365c%2C hypothetical protein%2C TR:O05833 (EMBL:AL123456) (113 aa)%3B Fasta score E(): 1.5e-22%2C 67.9%25 identity in 106 aa overlap. Similar to Streptomyces coelicolor SCC77.05%2C hypothetical protein%2C TR:Q9RDF3 (EMBL:AL136503) (132 aa)%3B Fasta score E(): 3.3e-06%2C 39.4%25 identity in 99 aa overlap. Previously sequenced as TR:Q49767 (EMBL:U00016) (108 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 108 aa overlap.;gbkey=CDS;gene=ML0630;product=conserved hypothetical protein;protein_id=CAC30138.1;transl_table=11
AL450380.1	EMBL	gene	763476	764384	.	+	.	ID=gene-era;Name=era;gbkey=Gene;gene=era;gene_biotype=protein_coding;gene_synonym=ML0631
AL450380.1	EMBL	CDS	763476	764384	.	+	0	ID=cds-CAC30139.1;Parent=gene-era;Dbxref=GOA:Q49768,InterPro:IPR004044,InterPro:IPR005225,InterPro:IPR005662,InterPro:IPR006073,InterPro:IPR009019,InterPro:IPR015946,InterPro:IPR027417,NCBI_GP:CAC30139.1;Name=CAC30139.1;Note=Similar to M. tuberculosis era%2C Rv2364c%2C GTP-binding protein Era homolog%2C SW:ERA_MYCTU (O05834) (300 aa)%3B Fasta score E(): 0%2C 81.4%25 identity in 301 aa overlap. Similar to many bacterial era-homologues and to Escherichia coli era%2C GTP-binding protein%2C SW:ERA_ECOLI (P06616) (301 aa)%3B Fasta score E(): 3.3e-30%2C 34.3%25 identity in 297 aa overlap. Previously sequenced as SW:ERA_MYCLE (Q49768) (302 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 302 aa overlap. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=era;product=putative Era-family GTP-binding protein;protein_id=CAC30139.1;transl_table=11
AL450380.1	EMBL	sequence_feature	763518	763541	.	+	.	ID=id-era;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=era
AL450380.1	EMBL	pseudogene	764433	765812	.	-	.	ID=gene-amiA2;Name=amiA2;gbkey=Gene;gene=amiA2;gene_biotype=pseudogene;gene_synonym=ML0632;pseudo=true
AL450380.1	EMBL	CDS	764433	765812	.	-	0	ID=cds-amiA2;Parent=gene-amiA2;Note=Possible pseudogene of M. tuberculosis orthologue amiA2 (Best blastx score 975);gbkey=CDS;gene=amiA2;product=putative amidase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	765911	766717	.	+	.	ID=gene-ML0633;Name=ML0633;gbkey=Gene;gene=ML0633;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	765911	766717	.	+	0	ID=cds-CAC30141.1;Parent=gene-ML0633;Dbxref=GOA:Q9CCN0,InterPro:IPR003717,InterPro:IPR012340,InterPro:IPR022572,NCBI_GP:CAC30141.1;Name=CAC30141.1;Note=Similar to M. tuberculosis Rv2362c%2C conserved hypothetical protein%2C TR:O05836 (EMBL:AL123456) (265 aa)%3B Fasta score E(): 0%2C 86.6%25 identity in 268 aa overlap. Similar to Streptomyces coelicolor SCC121.13C%2C hypothetical protein%2C TR:CAB69731 (EMBL:AL137166) (251 aa)%3B Fasta score E(): 0%2C 52.8%25 identity in 248 aa overlap. Shows weak similarity%2C except at C-terminus to Bacillus subtilis recO%2C DNA repair protein%2C SW:RECO_BACSU (P42095) (255 aa)%3B Fasta score E(): 5.3e-11%2C 27.3%25 identity in 176 aa overlap. Previously sequenced as TR:Q49754 (EMBL:U00016) (269 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 268 aa overlap.;gbkey=CDS;gene=ML0633;product=conserved hypothetical protein;protein_id=CAC30141.1;transl_table=11
AL450380.1	EMBL	gene	766710	767600	.	+	.	ID=gene-ML0634;Name=ML0634;gbkey=Gene;gene=ML0634;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	766710	767600	.	+	0	ID=cds-CAC30142.1;Parent=gene-ML0634;Dbxref=GOA:P38119,InterPro:IPR001441,InterPro:IPR018520,NCBI_GP:CAC30142.1;Name=CAC30142.1;Note=Similar to M. tuberculosis Rv2361c%2C putative undecaprenyl pyrophosphate synthetase%2C SW:UPPS_MYCTU (O05837) (296 aa)%3B Fasta score E(): 0%2C 86.5%25 identity in 296 aa overlap. Similar to many e.g. Micrococcus luteus uppS%2C undecaprenyl pyrophosphate synthetase%2C SW:UPPS_MICLU (O82827) (249 aa)%3B Fasta score E(): 5.4e-30%2C 39.4%25 identity in 246 aa overlap. Previously sequenced as SW:UPPS_MYCLE (P38119) (296 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 296 aa overlap. Contains Pfam match to entry PF01255 UPP_synthetase%2C Putative undecaprenyl diphosphate synthase. Contains PS01066 Undecaprenyl pyrophosphate synthetase family signature.%3B~Similar to ML2467;gbkey=CDS;gene=ML0634;product=putative undecaprenyl pyrophosphate synthetase;protein_id=CAC30142.1;transl_table=11
AL450380.1	EMBL	sequence_feature	766929	767594	.	+	.	ID=id-ML0634;Note=Pfam match to entry PF01255 UPP_synthetase%2C Putative undecaprenyl diphosphate synthase%2C score 487.70%2C E-value 8.8e-143;gbkey=misc_feature;gene=ML0634
AL450380.1	EMBL	sequence_feature	767427	767480	.	+	.	ID=id-ML0634-2;Note=PS01066 Undecaprenyl pyrophosphate synthetase family signature;gbkey=misc_feature;gene=ML0634
AL450380.1	EMBL	pseudogene	767600	767932	.	+	.	ID=gene-ML0635;Name=ML0635;gbkey=Gene;gene=ML0635;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	767600	767932	.	+	0	ID=cds-ML0635;Parent=gene-ML0635;Note=Possible pseudogene of M. tuberculosis orthologue Rv2360c (Best blastx score 192);gbkey=CDS;gene=ML0635;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	767995	768473	.	-	.	ID=gene-ML0636;Name=ML0636;gbkey=Gene;gene=ML0636;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	767995	768473	.	-	0	ID=cds-ML0636;Parent=gene-ML0636;Note=Possible pseudogene similar to M. tuberculosis lpqQ (Best blastx score 118);gbkey=CDS;gene=ML0636;product=lipoprotein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	768879	768986	.	-	.	ID=gene-ML0636A;Name=ML0636A;gbkey=Gene;gene=ML0636A;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	768879	768986	.	-	0	ID=cds-ML0636A;Parent=gene-ML0636A;Note=ML0636A. Possible pseudogene similar to M. tuberculosis Rv3198 A (84 aa). (Best blastx score 132);gbkey=CDS;gene=ML0636A;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	769118	771271	.	+	.	ID=gene-uvrD2;Name=uvrD2;gbkey=Gene;gene=uvrD2;gene_biotype=protein_coding;gene_synonym=ML0637
AL450380.1	EMBL	CDS	769118	771271	.	+	0	ID=cds-CAC30146.1;Parent=gene-uvrD2;Dbxref=GOA:P53528,InterPro:IPR000212,InterPro:IPR002121,InterPro:IPR010997,InterPro:IPR014016,InterPro:IPR014017,InterPro:IPR027417,NCBI_GP:CAC30146.1;Name=CAC30146.1;Note=Similar to M. tuberculosis uvrD2%2C Rv3198c%2C putative ATP-dependent DNA helicase%2C SW:UVRD_MYCTU (O53344) (700 aa)%3B Fasta score E(): 0%2C 82.9%25 identity in 706 aa overlap. Similar to many e.g. Escherichia coli uvrD%2C DNA helicase II%2C SW:UVRD_ECOLI (P03018) (720 aa)%3B Fasta score E(): 1.1e-20%2C 32.6%25 identity in 660 aa overlap. Previously sequenced as SW:UVRD_MYCLE (P53528) (457 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 439 aa overlap. Contains Pfam match to entry PF00570 HRDC%2C HRDC domain. Contains Pfam match to entry PF00580 UvrD-helicase%2C UvrD/REP helicase. Contains PS00017 ATP/GTP-binding site motif A (P-loop).%3B~ML0153;gbkey=CDS;gene=uvrD2;product=putative ATP-dependent DNA helicase;protein_id=CAC30146.1;transl_table=11
AL450380.1	EMBL	sequence_feature	769163	770626	.	+	.	ID=id-uvrD2;Note=Pfam match to entry PF00580 UvrD-helicase%2C UvrD/REP helicase%2C score 191.00%2C E-value 1.9e-53;gbkey=misc_feature;gene=uvrD2
AL450380.1	EMBL	sequence_feature	769217	769240	.	+	.	ID=id-uvrD2-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=uvrD2
AL450380.1	EMBL	sequence_feature	771023	771268	.	+	.	ID=id-uvrD2-3;Note=Pfam match to entry PF00570 HRDC%2C HRDC domain%2C score 54.00%2C E-value 3.4e-12;gbkey=misc_feature;gene=uvrD2
AL450380.1	EMBL	ribosome_entry_site	771412	771416	.	+	.	ID=id-AL450380.1:771412..771416;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	771426	771728	.	+	.	ID=gene-ML0638;Name=ML0638;gbkey=Gene;gene=ML0638;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	771426	771728	.	+	0	ID=cds-CAC30147.1;Parent=gene-ML0638;Dbxref=GOA:Q49769,NCBI_GP:CAC30147.1;Name=CAC30147.1;Note=Unknown function. Previously sequenced as TR:Q49769 (EMBL:U00016) (100 aa)%3B Fasta score E(): 0%2C 99.0%25 identity in 100 aa overlap. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=ML0638;product=putative secreted protein;protein_id=CAC30147.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	771715	771720	.	+	.	ID=id-ML0638;Parent=gene-ML0638;Note=possible RBS;gbkey=regulatory;gene=ML0638;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	771722	771991	.	+	.	ID=gene-whiB7;Name=whiB7;gbkey=Gene;gene=whiB7;gene_biotype=protein_coding;gene_synonym=ML0639
AL450380.1	EMBL	CDS	771722	771991	.	+	0	ID=cds-CAC30148.1;Parent=gene-whiB7;Dbxref=GOA:Q49765,InterPro:IPR003482,UniProtKB/TrEMBL:Q49765,NCBI_GP:CAC30148.1;Name=CAC30148.1;Note=Similar to M. tuberculosis Rv1021c%2C whiB7%2C probable DNA-binding protein%2C TR:Q9S4Q3 (EMBL:AF121014) (134 aa)%3B Fasta score E(): 9.6e-25%2C 69.3%25 identity in 88 aa overlap (from mRNA). Shows weak similarity to members of the whiB-family of transcriptional regulators e.g. Streptomyces coelicolor whiD%2C WhiD protein%2C TR:O88103 (EMBL:AJ010601) (112 aa)%3B Fasta score E(): 0.0045%2C 34.7%25 identity in 72 aa overlap. Previously sequenced as TR:Q49765 (EMBL:U00016) (89 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 89 aa overlap.%3B~Similar to ML0382%2C ML0760%2C ML0804 and ML2307;gbkey=CDS;gene=whiB7;product=putative transcriptional regulator;protein_id=CAC30148.1;transl_table=11
AL450380.1	EMBL	gene	772068	773489	.	-	.	ID=gene-ML0640;Name=ML0640;gbkey=Gene;gene=ML0640;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	772068	773489	.	-	0	ID=cds-CAC30149.1;Parent=gene-ML0640;Dbxref=GOA:Q9CCM8,InterPro:IPR002575,InterPro:IPR004147,InterPro:IPR011009,UniProtKB/TrEMBL:Q9CCM8,NCBI_GP:CAC30149.1;Name=CAC30149.1;Note=Similar to M. tuberculosis Rv3197%2C putative ABC transporter%2C TR:O53343 (EMBL:AL123456) (447 aa)%3B Fasta score E(): 0%2C 83.0%25 identity in 447 aa overlap. Similar to many ABC1-like hypothetical proteins from bacteria and eukaryotes. Similar to Saccharomyces cerevisiae ABC1%2C ABC1 protein precursor%2C SW:ABC1_YEAST (P27697) (501 aa)%3B Fasta score E(): 7.3e-19%2C 24.9%25 identity in 382 aa overlap. Previously sequenced as TR:Q49747 (EMBL:U00016) (267 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 248 aa overlap. Contains PS00017 ATP/GTP-binding site motif A (P-loop).%3B~Similar to ML1898;gbkey=CDS;gene=ML0640;product=conserved hypothetical protein;protein_id=CAC30149.1;transl_table=11
AL450380.1	EMBL	sequence_feature	773274	773297	.	-	.	ID=id-ML0640;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML0640
AL450380.1	EMBL	pseudogene	773607	774443	.	-	.	ID=gene-ML0641;Name=ML0641;gbkey=Gene;gene=ML0641;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	773607	774443	.	-	0	ID=cds-ML0641;Parent=gene-ML0641;Note=Possible pseudogene of M. tuberculosis orthologue Rv3196 (Best blastx score 289);gbkey=CDS;gene=ML0641;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	774506	775945	.	-	.	ID=gene-ML0642;Name=ML0642;gbkey=Gene;gene=ML0642;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	774506	775945	.	-	0	ID=cds-CAC30151.1;Parent=gene-ML0642;Dbxref=InterPro:IPR018766,UniProtKB/TrEMBL:Q49746,NCBI_GP:CAC30151.1;Name=CAC30151.1;Note=Similar to M. tuberculosis Rv3195%2C conserved hypothetical protein%2C TR:O53341 (EMBL:AL123456) (472 aa)%3B Fasta score E(): 0%2C 79.2%25 identity in 475 aa overlap. Similar to Streptomyces coelicolor SCE9.14C%2C hypothetical protein%2C TR:Q9X8I7 (EMBL:AL049841) (375 aa)%3B Fasta score E(): 4.9e-12%2C 24.9%25 identity in 305 aa overlap. previously sequenced as TR:Q49746 (EMBL:U00016) (479 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 479 aa overlap.;gbkey=CDS;gene=ML0642;product=conserved hypothetical protein;protein_id=CAC30151.1;transl_table=11
AL450380.1	EMBL	gene	776008	777030	.	+	.	ID=gene-ML0643;Name=ML0643;gbkey=Gene;gene=ML0643;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	776008	777030	.	+	0	ID=cds-CAC30152.1;Parent=gene-ML0643;Dbxref=GOA:Q9CCM7,InterPro:IPR001478,InterPro:IPR008269,InterPro:IPR014721,InterPro:IPR020568,InterPro:IPR027065,UniProtKB/TrEMBL:Q9CCM7,NCBI_GP:CAC30152.1;Name=CAC30152.1;Note=Similar to M. tuberculosis Rv3194c%2C conserved hypothetical protein%2C TR:O53340 (EMBL:AL123456) (340 aa)%3B Fasta score E(): 0%2C 80.3%25 identity in 340 aa overlap. Similar to bacterial hypothetical proteins e.g. Streptomyces coelicolor sdrC%2C hypothetical protein%2C TR:Q9S3Y5 (EMBL:AF170560) (241 aa)%3B Fasta score E(): 5.5e-18%2C 34.9%25 identity in 318 aa overlap. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=ML0643;product=putative secreted protein;protein_id=CAC30152.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	777164	777167	.	+	.	ID=id-AL450380.1:777164..777167;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	777176	780127	.	+	.	ID=gene-ML0644;Name=ML0644;gbkey=Gene;gene=ML0644;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	777176	780127	.	+	0	ID=cds-CAC30153.1;Parent=gene-ML0644;Dbxref=GOA:Q9CCM6,InterPro:IPR005372,NCBI_GP:CAC30153.1;Name=CAC30153.1;Note=Similar to M. tuberculosis Rv3193c%2C putative integral membrane protein%2C TR:O53339 (EMBL:AL123456) (992 aa)%3B Fasta score E(): 0%2C 86.1%25 identity in 989 aa overlap and to Rv0064%2C putative membrane protein%2C TR:O53609 (EMBL:AL123456) (979 aa)%3B Fasta score E(): 0%2C 49.3%25 identity in 984 aa overlap. Similar to bacterial hypothetical membrane proteins. Previously sequenced as TR:O32904 (EMBL:Z98271) (277 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 277 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0644;product=putative integral membrane protein;protein_id=CAC30153.1;transl_table=11
AL450380.1	EMBL	gene	780284	780360	.	+	.	ID=gene-metU;Name=metU;gbkey=Gene;gene=metU;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	780284	780360	.	+	.	ID=rna-metU;Parent=gene-metU;Note=tRNA Met anticodon CAT%2C Cove score 88.77;gbkey=tRNA;gene=metU;product=tRNA-Met
AL450380.1	EMBL	exon	780284	780360	.	+	.	ID=exon-metU-1;Parent=rna-metU;Note=tRNA Met anticodon CAT%2C Cove score 88.77;gbkey=tRNA;gene=metU;product=tRNA-Met
AL450380.1	EMBL	pseudogene	782071	782519	.	+	.	ID=gene-ML0645;Name=ML0645;gbkey=Gene;gene=ML0645;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	782071	782519	.	+	0	ID=cds-ML0645;Parent=gene-ML0645;Note=Possible pseudogene of M. tuberculosis orthologue Rv3172c (Best blastx score 176);gbkey=CDS;gene=ML0645;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	783177	783857	.	+	.	ID=gene-hpx;Name=hpx;gbkey=Gene;gene=hpx;gene_biotype=pseudogene;gene_synonym=ML0646;pseudo=true
AL450380.1	EMBL	CDS	783177	783857	.	+	0	ID=cds-hpx;Parent=gene-hpx;Note=Possible pseudogene of M. tuberculosis orthologue hpx (Best blastx score 187);gbkey=CDS;gene=hpx;product=probable non-heme haloperoxidase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	783902	785173	.	-	.	ID=gene-ML0647;Name=ML0647;gbkey=Gene;gene=ML0647;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	783902	785173	.	-	0	ID=cds-ML0647;Parent=gene-ML0647;Note=Possible pseudogene of M. tuberculosis orthologue Rv3170 (Best blastx score 441);gbkey=CDS;gene=ML0647;product=Probable flavin-containing monoamine oxidase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	786098	787165	.	-	.	ID=gene-ML0648;Name=ML0648;gbkey=Gene;gene=ML0648;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	786098	787165	.	-	0	ID=cds-ML0648;Parent=gene-ML0648;Note=Possible pseudogene of M. tuberculosis orthologue Rv3169 (Best blastx score 168);gbkey=CDS;gene=ML0648;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	787162	788296	.	-	.	ID=gene-ML0649;Name=ML0649;gbkey=Gene;gene=ML0649;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	787162	788296	.	-	0	ID=cds-ML0649;Parent=gene-ML0649;Note=Possible pseudogene of M. tuberculosis orthologue Rv3168 (Best blastx score 320);gbkey=CDS;gene=ML0649;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	788362	788662	.	+	.	ID=gene-ML0650;Name=ML0650;gbkey=Gene;gene=ML0650;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	788362	788662	.	+	0	ID=cds-ML0650;Parent=gene-ML0650;Note=Possible pseudogene of M. tuberculosis orthologue Rv3167c (Best blastx score 210);gbkey=CDS;gene=ML0650;product=putative transcriptional regulator (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	788694	789822	.	-	.	ID=gene-ML0651;Name=ML0651;gbkey=Gene;gene=ML0651;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	788694	789822	.	-	0	ID=cds-ML0651;Parent=gene-ML0651;Note=Possible pseudogene similar to M. tuberculosis REP-family proteins (Best blastx score 93);gbkey=CDS;gene=ML0651;product=REP-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	790108	791036	.	+	.	ID=gene-ML0652;Name=ML0652;gbkey=Gene;gene=ML0652;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	790108	791036	.	+	0	ID=cds-ML0652;Parent=gene-ML0652;Note=Possible pseudogene of M. tuberculosis orthologue Rv3166c (Best blastx score 276);gbkey=CDS;gene=ML0652;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	791048	791528	.	+	.	ID=gene-ML0653;Name=ML0653;gbkey=Gene;gene=ML0653;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	791048	791528	.	+	0	ID=cds-ML0653;Parent=gene-ML0653;Note=Possible pseudogene of M. tuberculosis orthologue Rv3165c (Best blastx score 151);gbkey=CDS;gene=ML0653;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	791657	792392	.	+	.	ID=gene-moxR3;Name=moxR3;gbkey=Gene;gene=moxR3;gene_biotype=pseudogene;gene_synonym=ML0654;pseudo=true
AL450380.1	EMBL	CDS	791657	792392	.	+	0	ID=cds-moxR3;Parent=gene-moxR3;Note=Possible pseudogene of M. tuberculosis orthologue moxR3 (Best blastx score 249);gbkey=CDS;gene=moxR3;product=transcriptional regulator%2C MoxR homologue (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	792430	793542	.	+	.	ID=gene-ML0655;Name=ML0655;gbkey=Gene;gene=ML0655;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	792430	793542	.	+	0	ID=cds-ML0655;Parent=gene-ML0655;Note=Possible pseudogene of M. tuberculosis orthologue Rv3163c (Best blastx score 376);gbkey=CDS;gene=ML0655;product=possible membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	793592	793873	.	-	.	ID=gene-ML0656;Name=ML0656;gbkey=Gene;gene=ML0656;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	793592	793873	.	-	0	ID=cds-CAC30165.1;Parent=gene-ML0656;Dbxref=UniProtKB/TrEMBL:Q7AQH1,NCBI_GP:CAC30165.1;Name=CAC30165.1;Note=Unknown function. Previously sequenced as TR:O32893 (EMBL:Z98271) (93 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 93 aa overlap.;gbkey=CDS;gene=ML0656;product=hypothetical protein;protein_id=CAC30165.1;transl_table=11
AL450380.1	EMBL	pseudogene	794101	794681	.	-	.	ID=gene-nuoN;Name=nuoN;gbkey=Gene;gene=nuoN;gene_biotype=pseudogene;gene_synonym=ML0657;pseudo=true
AL450380.1	EMBL	CDS	794101	794681	.	-	0	ID=cds-nuoN;Parent=gene-nuoN;Note=Possible pseudogene of M. tuberculosis orthologue nuoN (Best blastx score 137);gbkey=CDS;gene=nuoN;product=NADH dehydrogenase chain N (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	794994	795483	.	-	.	ID=gene-fadB4;Name=fadB4;gbkey=Gene;gene=fadB4;gene_biotype=pseudogene;gene_synonym=ML0658;pseudo=true
AL450380.1	EMBL	CDS	794994	795483	.	-	0	ID=cds-fadB4;Parent=gene-fadB4;Note=Possible pseudogene of M. tuberculosis orthologue fadB4 (Best blastx score 267);gbkey=CDS;gene=fadB4;product=3-hydroxyacyl-CoA dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	795537	795863	.	-	.	ID=gene-ML0659;Name=ML0659;gbkey=Gene;gene=ML0659;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	795537	795863	.	-	0	ID=cds-CAC30168.1;Parent=gene-ML0659;Dbxref=UniProtKB/TrEMBL:Q7AQH0,NCBI_GP:CAC30168.1;Name=CAC30168.1;Note=Unknown function. Previously sequenced as TR:O32892 (EMBL:Z98271) (108 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 108 aa overlap.;gbkey=CDS;gene=ML0659;product=hypothetical protein;protein_id=CAC30168.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	795874	795877	.	-	.	ID=id-AL450380.1:795874..795877;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	796047	797249	.	-	.	ID=gene-fadE23;Name=fadE23;gbkey=Gene;gene=fadE23;gene_biotype=protein_coding;gene_synonym=ML0660
AL450380.1	EMBL	CDS	796047	797249	.	-	0	ID=cds-CAC30169.1;Parent=gene-fadE23;Dbxref=GOA:Q7AQG9,InterPro:IPR006091,InterPro:IPR009075,InterPro:IPR009100,UniProtKB/TrEMBL:Q7AQG9,NCBI_GP:CAC30169.1;Name=CAC30169.1;Note=Similar to M. tuberculosis fadE23%2C Rv3140%2C acyl-CoA dehydrogenase%2C TR:P95186 (EMBL:AL123456) (401 aa)%3B Fasta score E(): 0%2C 89.5%25 identity in 401 aa overlap. Similar to many e.g. Homo sapiens acadS%2C acyl-coa dehydrogenase%2C short-chain specific precursor%2C SW:ACDS_HUMAN (P16219) (412 aa)%3B Fasta score E(): 4.1e-31%2C 31.8%25 identity in 393 aa overlap. Previously sequenced as TR:O32891 (EMBL:Z98271) (400 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 400 aa overlap. Contains 2 Pfam matches to entry PF00441 Acyl-CoA_dh%2C Acyl-CoA dehydrogenase.%3B~Similar to ML0737;gbkey=CDS;gene=fadE23;product=putative acyl-CoA dehydrogenase;protein_id=CAC30169.1;transl_table=11
AL450380.1	EMBL	sequence_feature	796083	796349	.	-	.	ID=id-fadE23;Note=Pfam match to entry PF00441 Acyl-CoA_dh%2C Acyl-CoA dehydrogenase%2C score 65.60%2C E-value 2e-18;gbkey=misc_feature;gene=fadE23
AL450380.1	EMBL	sequence_feature	796437	796868	.	-	.	ID=id-fadE23-2;Note=Pfam match to entry PF00441 Acyl-CoA_dh%2C Acyl-CoA dehydrogenase%2C score 162.30%2C E-value 8.6e-47;gbkey=misc_feature;gene=fadE23
AL450380.1	EMBL	gene	797292	798689	.	-	.	ID=gene-fadE24;Name=fadE24;gbkey=Gene;gene=fadE24;gene_biotype=protein_coding;gene_synonym=ML0661
AL450380.1	EMBL	CDS	797292	798689	.	-	0	ID=cds-CAC30170.1;Parent=gene-fadE24;Dbxref=GOA:Q7AQG8,InterPro:IPR006089,InterPro:IPR006091,InterPro:IPR009075,InterPro:IPR009100,InterPro:IPR013786,UniProtKB/TrEMBL:Q7AQG8,NCBI_GP:CAC30170.1;Name=CAC30170.1;Note=Similar to M. tuberculosis fadE24%2C Rv3139%2C acyl-CoA dehydrogenase%2C TR:P95187 (EMBL:AL123456) (468 aa)%3B Fasta score E(): 0%2C 83.6%25 identity in 464 aa overlap. Similar to many e.g. Streptomyces lividans fadE%2C fatty acid acyl-CoA dehydrogenase%2C TR:Q9RIQ5 (EMBL:AJ250495) (385 aa)%3B Fasta score E(): 5.1e-27%2C 28.5%25 identity in 376 aa overlap. Previously sequenced as TR:O32890 (EMBL:Z98271) (465 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 465 aa overlap. Contains 2 Pfam matches to entry PF00441 Acyl-CoA_dh%2C Acyl-CoA dehydrogenase. Contains PS00073 Acyl-CoA dehydrogenases signature 2.%3B~Similar to ML0737;gbkey=CDS;gene=fadE24;product=putative acyl-CoA dehydrogenase;protein_id=CAC30170.1;transl_table=11
AL450380.1	EMBL	sequence_feature	797328	797672	.	-	.	ID=id-fadE24;Note=Pfam match to entry PF00441 Acyl-CoA_dh%2C Acyl-CoA dehydrogenase%2C score 116.20%2C E-value 2.9e-33;gbkey=misc_feature;gene=fadE24
AL450380.1	EMBL	sequence_feature	797334	797393	.	-	.	ID=id-fadE24-2;Note=PS00073 Acyl-CoA dehydrogenases signature 2;gbkey=misc_feature;gene=fadE24
AL450380.1	EMBL	sequence_feature	798216	798368	.	-	.	ID=id-fadE24-3;Note=Pfam match to entry PF00441 Acyl-CoA_dh%2C Acyl-CoA dehydrogenase%2C score 15.70%2C E-value 0.00088;gbkey=misc_feature;gene=fadE24
AL450380.1	EMBL	gene	798766	799533	.	-	.	ID=gene-ML0662;Name=ML0662;gbkey=Gene;gene=ML0662;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	798766	799533	.	-	0	ID=cds-CAC30171.1;Parent=gene-ML0662;Dbxref=GOA:Q7AQG7,InterPro:IPR000760,InterPro:IPR011809,InterPro:IPR020583,UniProtKB/TrEMBL:Q7AQG7,NCBI_GP:CAC30171.1;Name=CAC30171.1;Note=Similar to M. tuberculosis Rv3137%2C putative monophosphatase%2C TR:P95189 (EMBL:AL123456) (260 aa)%3B Fasta score E(): 0%2C 81.8%25 identity in 253 aa overlap. Similar to putative N-amidino-scyllo-inosamine-4-phosphate phosphatases from Streptomyces spp. e.g. Streptomyces glaucescens strO%2C TR:P72460 (EMBL:Y08764) (256 aa)%3B Fasta score E(): 9.8e-19%2C 36.2%25 identity in 229 aa overlap. Previously sequenced as TR:O32889 (EMBL:Z98271) (255 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 255 aa overlap. Contains 2 Pfam matches to entry PF00459 inositol_P%2C Inositol monophosphatase family. Contains PS00629 Inositol monophosphatase family signature 1.%3B~Similar to ML1024;gbkey=CDS;gene=ML0662;product=putative monophosphatase;protein_id=CAC30171.1;transl_table=11
AL450380.1	EMBL	sequence_feature	798865	798984	.	-	.	ID=id-ML0662;Note=Pfam match to entry PF00459 inositol_P%2C Inositol monophosphatase family%2C score 24.20%2C E-value 8.5e-06;gbkey=misc_feature;gene=ML0662
AL450380.1	EMBL	sequence_feature	799150	799362	.	-	.	ID=id-ML0662-2;Note=Pfam match to entry PF00459 inositol_P%2C Inositol monophosphatase family%2C score 69.30%2C E-value 1.6e-18;gbkey=misc_feature;gene=ML0662
AL450380.1	EMBL	sequence_feature	799273	799314	.	-	.	ID=id-ML0662-3;Note=PS00629 Inositol monophosphatase family signature 1;gbkey=misc_feature;gene=ML0662
AL450380.1	EMBL	gene	799661	799975	.	+	.	ID=gene-ML0663;Name=ML0663;gbkey=Gene;gene=ML0663;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	799661	799975	.	+	0	ID=cds-CAC30172.1;Parent=gene-ML0663;Dbxref=UniProtKB/TrEMBL:Q7AQG6,NCBI_GP:CAC30172.1;Name=CAC30172.1;Note=Unknown function. Previously sequenced as TR:O32888 (EMBL:Z98271) (104 aa)%3B Fasta score E(): 0%2C 99.0%25 identity in 104 aa overlap.;gbkey=CDS;gene=ML0663;product=hypothetical protein;protein_id=CAC30172.1;transl_table=11
AL450380.1	EMBL	gene	800116	800379	.	+	.	ID=gene-ML0664;Name=ML0664;gbkey=Gene;gene=ML0664;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	800116	800379	.	+	0	ID=cds-CAC30173.1;Parent=gene-ML0664;Dbxref=UniProtKB/TrEMBL:Q9CCM5,NCBI_GP:CAC30173.1;Name=CAC30173.1;Note=Unknown function.;gbkey=CDS;gene=ML0664;product=hypothetical protein;protein_id=CAC30173.1;transl_table=11
AL450380.1	EMBL	pseudogene	800705	801966	.	+	.	ID=gene-ML0665;Name=ML0665;gbkey=Gene;gene=ML0665;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	800705	801966	.	+	0	ID=cds-ML0665;Parent=gene-ML0665;Note=Possible pseudogene of M. tuberculosis orthologue Rv3107c (Best blastx score 234);gbkey=CDS;gene=ML0665;product=Some similarity to D-lactate dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	801976	803346	.	-	.	ID=gene-fprA;Name=fprA;gbkey=Gene;gene=fprA;gene_biotype=protein_coding;gene_synonym=ML0666
AL450380.1	EMBL	CDS	801976	803346	.	-	0	ID=cds-CAC30175.1;Parent=gene-fprA;Dbxref=GOA:O32886,InterPro:IPR016040,InterPro:IPR021163,NCBI_GP:CAC30175.1;Name=CAC30175.1;Note=Similar to M. tuberculosis fprA%2C Rv3106%2C putative ferredoxin reductase%2C TR:O05783 (EMBL:AL123456) (456 aa)%3B Fasta score E(): 0%2C 80.8%25 identity in 459 aa overlap. Similar to adrenodoxin reductases e.g. Bos taurus fdxR%2C NADPH:adrenodoxin oxidoreductase precursor%2C SW:ADRO_BOVIN (P08165) (492 aa)%3B Fasta score E(): 0%2C 40.9%25 identity in 465 aa overlap. Previously sequenced as TR:O32886 (EMBL:Z98271) (456 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 456 aa overlap.%3B~Similar to ML2134;gbkey=CDS;gene=fprA;product=putative NADPH-ferredoxin reductase;protein_id=CAC30175.1;transl_table=11
AL450380.1	EMBL	gene	803526	804650	.	+	.	ID=gene-prfB;Name=prfB;gbkey=Gene;gene=prfB;gene_biotype=protein_coding;gene_synonym=ML0667
AL450380.1	EMBL	CDS	803526	804650	.	+	0	ID=cds-CAC30176.1;Parent=gene-prfB;Dbxref=GOA:O32885,InterPro:IPR000352,InterPro:IPR004374,InterPro:IPR005139,InterPro:IPR014720,InterPro:IPR020853,NCBI_GP:CAC30176.1;Name=CAC30176.1;Note=Similar to M. tuberculosis prfB%2C Rv3105c%2C peptide chain release factor 2%2C SW:RF2_MYCTU (O05782) (371 aa)%3B Fasta score E(): 0%2C 90.1%25 identity in 372 aa overlap. Similar to many e.g. Streptomyces coelicolor prfB%2C peptide chain release factor 2%2C SW:RF2_STRCO (Q53915) (368 aa)%3B Fasta score E(): 0%2C 66.9%25 identity in 369 aa overlap. Previously sequenced as SW:RF2_MYCLE (O32885) (374 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 374 aa overlap. Contains Pfam match to entry PF00472 RF-1%2C Peptidyl-tRNA hydrolase domain. Contains PS00745 Prokaryotic-type class I peptide chain release factors signature.%3B~Similar to ML1134;gbkey=CDS;gene=prfB;product=putative peptide chain release factor 2;protein_id=CAC30176.1;transl_table=11
AL450380.1	EMBL	sequence_feature	804210	804548	.	+	.	ID=id-prfB;Note=Pfam match to entry PF00472 RF-1%2C Peptidyl-tRNA hydrolase domain%2C score 216.20%2C E-value 4.8e-61;gbkey=misc_feature;gene=prfB
AL450380.1	EMBL	sequence_feature	804270	804320	.	+	.	ID=id-prfB-2;Note=PS00745 Prokaryotic-type class I peptide chain release factors signature;gbkey=misc_feature;gene=prfB
AL450380.1	EMBL	pseudogene	804680	805479	.	+	.	ID=gene-ML0668;Name=ML0668;gbkey=Gene;gene=ML0668;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	804680	805479	.	+	0	ID=cds-ML0668;Parent=gene-ML0668;Note=Possible pseudogene of M. tuberculosis orthologue Rv3104c (Best blastx score 303);gbkey=CDS;gene=ML0668;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	805920	806609	.	+	.	ID=gene-ftsE;Name=ftsE;gbkey=Gene;gene=ftsE;gene_biotype=protein_coding;gene_synonym=ML0669
AL450380.1	EMBL	CDS	805920	806609	.	+	0	ID=cds-CAC30178.1;Parent=gene-ftsE;Dbxref=GOA:Q7AQG5,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR005286,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7AQG5,NCBI_GP:CAC30178.1;Name=CAC30178.1;Note=Similar to M. tuberculosis ftsE%2C Rv3102c%2C cell division ATP-binding protein%2C TR:O05779 (EMBL:AL123456) (229 aa)%3B Fasta score E(): 0%2C 91.7%25 identity in 229 aa overlap. Similar to many e.g. Escherichia coli ftsE%2C cell division ATP-binding protein%2C SW:FTSE_ECOLI (P10115) (222 aa)%3B Fasta score E(): 0%2C 49.1%25 identity in 216 aa overlap. Previously sequenced as TR:O32883 (EMBL:Z98271) (229 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 229 aa overlap. Contains Pfam match to entry PF00005 ABC_tran%2C ABC transporter. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00211 ABC transporters family signature.;gbkey=CDS;gene=ftsE;product=putative cell division ATP-binding protein;protein_id=CAC30178.1;transl_table=11
AL450380.1	EMBL	sequence_feature	806004	806561	.	+	.	ID=id-ftsE;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 216.00%2C E-value 5.6e-61;gbkey=misc_feature;gene=ftsE
AL450380.1	EMBL	sequence_feature	806025	806048	.	+	.	ID=id-ftsE-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ftsE
AL450380.1	EMBL	sequence_feature	806334	806378	.	+	.	ID=id-ftsE-3;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=ftsE
AL450380.1	EMBL	gene	806610	807503	.	+	.	ID=gene-ftsX;Name=ftsX;gbkey=Gene;gene=ftsX;gene_biotype=protein_coding;gene_synonym=ML0670
AL450380.1	EMBL	CDS	806610	807503	.	+	0	ID=cds-CAC30179.1;Parent=gene-ftsX;Dbxref=GOA:O32882,InterPro:IPR003838,InterPro:IPR004513,NCBI_GP:CAC30179.1;Name=CAC30179.1;Note=Similar to M. tuberculosis ftsX%2C Rv3101c%2C cell division protein ftsX homolog%2C SW:FTSX_MYCTU (P96293) (297 aa)%3B Fasta score E(): 0%2C 80.8%25 identity in 297 aa overlap. Similar to many ftsX homologues e.g. Bacillus subtilis ftsX%2C cell division protein ftsX homolog%2C SW:FTSX_BACSU (O34876) (296 aa)%3B Fasta score E(): 2.5e-14%2C 25.8%25 identity in 302 aa overlap. Previously sequenced as SW:FTSX_MYCLE (O32882) (287 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 287 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ftsX;product=putative membrane protein;protein_id=CAC30179.1;transl_table=11
AL450380.1	EMBL	gene	807506	807988	.	+	.	ID=gene-smpB;Name=smpB;gbkey=Gene;gene=smpB;gene_biotype=protein_coding;gene_synonym=ML0671
AL450380.1	EMBL	CDS	807506	807988	.	+	0	ID=cds-CAC30180.1;Parent=gene-smpB;Dbxref=GOA:O32881,InterPro:IPR000037,InterPro:IPR020081,InterPro:IPR023620,NCBI_GP:CAC30180.1;Name=CAC30180.1;Note=Similar to M. tuberculosis smpB%2C Rv3100c%2C SsrA-binding protein%2C SW:SMPB_MYCTU (P96294) (160 aa)%3B Fasta score E(): 0%2C 84.9%25 identity in 159 aa overlap. Similar to many e.g. Escherichia coli smpB%2C SSRA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA)%2C SW:SMPB_ECOLI (P32052) (159 aa)%3B Fasta score E(): 4.1e-19%2C 41.8%25 identity in 146 aa overlap. Previously sequenced as SW:SMPB_MYCLE (O32881) (160 aa)%3B Fasta score E(): 0%2C 99.4%25 identity in 160 aa overlap. Contains Pfam match to entry PF01668 SmpB%2C SmpB protein. Contains PS01317 Protein smpB signature.;gbkey=CDS;gene=smpB;product=putative SsrA-binding protein;protein_id=CAC30180.1;transl_table=11
AL450380.1	EMBL	sequence_feature	807539	807736	.	+	.	ID=id-smpB;Note=Pfam match to entry PF01668 SmpB%2C SmpB protein%2C score 145.70%2C E-value 8.1e-40;gbkey=misc_feature;gene=smpB
AL450380.1	EMBL	sequence_feature	807593	807631	.	+	.	ID=id-smpB-2;Note=PS01317 Protein smpB signature;gbkey=misc_feature;gene=smpB
AL450380.1	EMBL	pseudogene	808148	808841	.	+	.	ID=gene-ML0672;Name=ML0672;gbkey=Gene;gene=ML0672;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	808148	808841	.	+	0	ID=cds-ML0672;Parent=gene-ML0672;Note=Possible pseudogene of M. tuberculosis orthologue Rv3099c (Best blastx score 271);gbkey=CDS;gene=ML0672;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	809055	809422	.	+	.	ID=gene-ssr;Name=ssr;gbkey=Gene;gene=ssr;gene_biotype=misc_RNA
AL450380.1	EMBL	transcript	809055	809422	.	+	.	ID=rna-ssr;Parent=gene-ssr;Note=tmRNA (10Sa RNA or SsrA) gene (see http://www.indiana.edu/~~tmrna/);gbkey=misc_RNA;gene=ssr
AL450380.1	EMBL	exon	809055	809422	.	+	.	ID=exon-ssr-1;Parent=rna-ssr;Note=tmRNA (10Sa RNA or SsrA) gene (see http://www.indiana.edu/~~tmrna/);gbkey=misc_RNA;gene=ssr
AL450380.1	EMBL	pseudogene	809936	810483	.	-	.	ID=gene-ML0673;Name=ML0673;gbkey=Gene;gene=ML0673;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	809936	810483	.	-	0	ID=cds-ML0673;Parent=gene-ML0673;Note=Possible pseudogene of M. tuberculosis orthologue Rv3359 (Best blastx score 307);gbkey=CDS;gene=ML0673;product=probable oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	810692	811540	.	+	.	ID=gene-folD;Name=folD;gbkey=Gene;gene=folD;gene_biotype=protein_coding;gene_synonym=ML0674
AL450380.1	EMBL	CDS	810692	811540	.	+	0	ID=cds-CAC30183.1;Parent=gene-folD;Dbxref=GOA:O32879,InterPro:IPR000672,InterPro:IPR016040,InterPro:IPR020630,InterPro:IPR020631,NCBI_GP:CAC30183.1;Name=CAC30183.1;Note=Similar to M. tuberculosis folD%2C Rv3356c%2C putative methylenetetrahydrofolate dehydrogenase%2C TR:O50385 (EMBL:AL123456) (281 aa)%3B Fasta score E(): 0%2C 86.5%25 identity in 281 aa overlap. Similar to many e.g. Escherichia coli folD%2C bifunctional methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase%2C SW:FOLD_ECOLI (P24186) (287 aa)%3B Fasta score E(): 0%2C 40.8%25 identity in 277 aa overlap. Previously sequenced as TR:O32879 (EMBL:Z98271) (282 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 282 aa overlap. Contains Pfam match to entry PF00763 THF_DHG_CYH%2C Tetrahydrofolate dehydrogenase/cyclohydrolase.;gbkey=CDS;gene=folD;product=putative methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase;protein_id=CAC30183.1;transl_table=11
AL450380.1	EMBL	sequence_feature	810734	811525	.	+	.	ID=id-folD;Note=Pfam match to entry PF00763 THF_DHG_CYH%2C Tetrahydrofolate dehydrogenase/cyclohydrolase%2C score 547.30%2C E-value 1.1e-160;gbkey=misc_feature;gene=folD
AL450380.1	EMBL	gene	811543	811818	.	+	.	ID=gene-ML0675;Name=ML0675;gbkey=Gene;gene=ML0675;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	811543	811818	.	+	0	ID=cds-CAC30184.1;Parent=gene-ML0675;Dbxref=InterPro:IPR021385,UniProtKB/TrEMBL:Q7AQG3,NCBI_GP:CAC30184.1;Name=CAC30184.1;Note=Similar to M. tuberculosis Rv3346c%2C conserved hypothetical protein%2C TR:O50384 (EMBL:AL123456) (97 aa)%3B Fasta score E(): 1.2e-24%2C 77.9%25 identity in 95 aa overlap (EMBL:AL123456) (97 aa)%3B Fasta score E(): 1.2e-24%2C 77.9%25 identity in 95 aa overlap and Rv3355c%2C conserved hypothetical protein%2C TR:O50384. Previously sequenced as TR:O32878 (EMBL:Z98271) (91 aa)%3B Fasta score E(): 0%2C 98.9%25 identity in 91 aa overlap.;gbkey=CDS;gene=ML0675;product=conserved hypothetical protein;protein_id=CAC30184.1;transl_table=11
AL450380.1	EMBL	gene	811815	812291	.	-	.	ID=gene-ML0676;Name=ML0676;gbkey=Gene;gene=ML0676;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	811815	812291	.	-	0	ID=cds-CAC30185.1;Parent=gene-ML0676;Dbxref=InterPro:IPR007969,UniProtKB/TrEMBL:Q9CCM4,NCBI_GP:CAC30185.1;Name=CAC30185.1;Note=Similar to M. tuberculosis Rv3354%2C conserved hypothetical protein%2C TR:O50383 (EMBL:AL123456) (129 aa)%3B Fasta score E(): 6.2e-24%2C 55.9%25 identity in 127 aa overlap and Rv1690%2C hypothetical protein%2C TR:O33192 (EMBL:AL123456) (127 aa)%3B Fasta score E(): 2e-09%2C 33.3%25 identity in 105 aa overlap. Previously sequenced as TR:O32877 (EMBL:Z98271) (168 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 158 aa overlap.;gbkey=CDS;gene=ML0676;product=hypothetical protein;protein_id=CAC30185.1;transl_table=11
AL450380.1	EMBL	pseudogene	812527	813381	.	+	.	ID=gene-ML0677;Name=ML0677;gbkey=Gene;gene=ML0677;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	812527	813381	.	+	0	ID=cds-ML0677;Parent=gene-ML0677;Note=Possible pseudogene of M. tuberculosis orthologue Rv0063 (Best blastx score 243);gbkey=CDS;gene=ML0677;product=probable oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	813432	813959	.	-	.	ID=gene-ML0678;Name=ML0678;gbkey=Gene;gene=ML0678;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	813432	813959	.	-	0	ID=cds-CAC30187.1;Parent=gene-ML0678;Dbxref=GOA:Q7AQG2,InterPro:IPR003346,UniProtKB/TrEMBL:Q7AQG2,NCBI_GP:CAC30187.1;Name=CAC30187.1;Note=Unknown function. Previously sequenced as TR:O32876 (EMBL:Z98271) (175 aa)%3B Fasta score E(): 0%2C 99.4%25 identity in 175 aa overlap.;gbkey=CDS;gene=ML0678;product=hypothetical protein;protein_id=CAC30187.1;transl_table=11
AL450380.1	EMBL	gene	814145	814372	.	+	.	ID=gene-ML0679;Name=ML0679;gbkey=Gene;gene=ML0679;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	814145	814372	.	+	0	ID=cds-CAC30188.1;Parent=gene-ML0679;Dbxref=UniProtKB/TrEMBL:Q9CCM3,NCBI_GP:CAC30188.1;Name=CAC30188.1;Note=Unknown function.;gbkey=CDS;gene=ML0679;product=hypothetical protein;protein_id=CAC30188.1;transl_table=11
AL450380.1	EMBL	pseudogene	814992	816275	.	+	.	ID=gene-ML0680;Name=ML0680;gbkey=Gene;gene=ML0680;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	814992	816275	.	+	0	ID=cds-ML0680;Parent=gene-ML0680;Note=Possible pseudogene similar to M. tuberculosis REP-family proteins (Best blastx score 392);gbkey=CDS;gene=ML0680;product=REP-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	816353	817055	.	-	.	ID=gene-ML0681;Name=ML0681;gbkey=Gene;gene=ML0681;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	816353	817055	.	-	0	ID=cds-ML0681;Parent=gene-ML0681;Note=Possible pseudogene of M. tuberculosis orthologue Rv3342 (Best blastx score 374);gbkey=CDS;gene=ML0681;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	817109	818257	.	-	.	ID=gene-metA;Name=metA;gbkey=Gene;gene=metA;gene_biotype=protein_coding;gene_synonym=ML0682
AL450380.1	EMBL	CDS	817109	818257	.	-	0	ID=cds-CAC30191.1;Parent=gene-metA;Dbxref=GOA:O32874,InterPro:IPR000073,InterPro:IPR008220,InterPro:IPR029058,NCBI_GP:CAC30191.1;Name=CAC30191.1;Note=Similar to M. tuberculosis metA%2C Rv3341%2C homoserine o-acetyltransferase%2C TR:O53391 (EMBL:AL123456) (379 aa)%3B Fasta score E(): 0%2C 85.0%25 identity in 380 aa overlap. Similar to many e.g. Leptospira meyeri metX%2C homoserine o-acetyltransferase%2C TR:P94891 (EMBL:Y10744) (379 aa)%3B Fasta score E(): 0%2C 36.4%25 identity in 382 aa overlap. Previously sequenced as TR:O32874 (EMBL:Z98271) (382 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 382 aa overlap. Contains Pfam match to entry PF00561 abhydrolase%2C alpha/beta hydrolase fold.;gbkey=CDS;gene=metA;product=putative homoserine o-acetyltransferase;protein_id=CAC30191.1;transl_table=11
AL450380.1	EMBL	sequence_feature	817154	817972	.	-	.	ID=id-metA;Note=Pfam match to entry PF00561 abhydrolase%2C alpha/beta hydrolase fold%2C score 36.40%2C E-value 6.6e-07;gbkey=misc_feature;gene=metA
AL450380.1	EMBL	pseudogene	818272	819512	.	-	.	ID=gene-metC;Name=metC;gbkey=Gene;gene=metC;gene_biotype=pseudogene;gene_synonym=ML0683;pseudo=true
AL450380.1	EMBL	CDS	818272	819512	.	-	0	ID=cds-metC;Parent=gene-metC;Note=Possible pseudogene of M. tuberculosis orthologue metC (Best blastx score 582);gbkey=CDS;gene=metC;product=cystathionine [beta]-lyase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	819971	821100	.	+	.	ID=gene-icd1;Name=icd1;gbkey=Gene;gene=icd1;gene_biotype=pseudogene;gene_synonym=ML0684;pseudo=true
AL450380.1	EMBL	CDS	819971	821100	.	+	0	ID=cds-icd1;Parent=gene-icd1;Note=Possible pseudogene of M. tuberculosis orthologue icd1 (Best blastx score 480);gbkey=CDS;gene=icd1;product=isocitrate dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	821179	822090	.	-	.	ID=gene-ML0685;Name=ML0685;gbkey=Gene;gene=ML0685;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	821179	822090	.	-	0	ID=cds-CAC30194.1;Parent=gene-ML0685;Dbxref=GOA:Q7AQG1,InterPro:IPR029058,UniProtKB/TrEMBL:Q7AQG1,NCBI_GP:CAC30194.1;Name=CAC30194.1;Note=Similar to M. tuberculosis Rv3337%2C conserved hypothetical protein%2C TR:O53387 (EMBL:AL123456) (82 aa)%3B Fasta score E(): 2.8e-17%2C 74.3%25 identity in 70 aa overlap and Rv3338%2C conserved hypothetical protein%2C TR:O53388 (EMBL:AL123456) (214 aa)%3B Fasta score E(): 0%2C 65.9%25 identity in 214 aa overlap which are similar to the N-terminus and remainder respectively. Show weak similarity to various hydrolases e.g. Rhodococcus sp. etbD1%2C aromatic compound hydrolase%2C TR:O82828 (EMBL:AB004320) (274 aa)%3B Fasta score E(): 1.8e-05%2C 25.8%25 identity in 267 aa overlap. Previously sequenced as TR:Q49926 (EMBL:U00022) (303 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 303 aa overlap. Contains Pfam match to entry PF00561 abhydrolase%2C alpha/beta hydrolase fold.;gbkey=CDS;gene=ML0685;product=putative hydrolase;protein_id=CAC30194.1;transl_table=11
AL450380.1	EMBL	sequence_feature	821224	821886	.	-	.	ID=id-ML0685;Note=Pfam match to entry PF00561 abhydrolase%2C alpha/beta hydrolase fold%2C score 38.00%2C E-value 2.1e-07;gbkey=misc_feature;gene=ML0685
AL450380.1	EMBL	gene	822126	823157	.	+	.	ID=gene-trpS;Name=trpS;gbkey=Gene;gene=trpS;gene_biotype=protein_coding;gene_synonym=ML0686
AL450380.1	EMBL	CDS	822126	823157	.	+	0	ID=cds-CAC30195.1;Parent=gene-trpS;Dbxref=GOA:Q49901,InterPro:IPR001412,InterPro:IPR002305,InterPro:IPR002306,InterPro:IPR014729,InterPro:IPR024109,NCBI_GP:CAC30195.1;Name=CAC30195.1;Note=Similar to M. tuberculosis trpS%2C Rv3336c%2C tryptophanyl-tRNA synthetase%2C SW:SYW_MYCTU (O53386) (336 aa)%3B Fasta score E(): 0%2C 83.8%25 identity in 339 aa overlap. Similar to many e.g. Escherichia coli trpS%2C tryptophanyl tRNA synthetase%2C SW:SYW_ECOLI (P00954) (334 aa)%3B Fasta score E(): 0%2C 49.6%25 identity in 335 aa overlap. Previously sequenced as SW:SYW_MYCLE (Q49901) (343 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 343 aa overlap. Contains Pfam match to entry PF00579 tRNA-synt_1b%2C tRNA synthetases class I (W and Y). Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature.;gbkey=CDS;gene=trpS;product=tryptophanyl tRNA synthetase;protein_id=CAC30195.1;transl_table=11
AL450380.1	EMBL	sequence_feature	822153	822839	.	+	.	ID=id-trpS;Note=Pfam match to entry PF00579 tRNA-synt_1b%2C tRNA synthetases class I (W and Y)%2C score 334.40%2C E-value 1.3e-96;gbkey=misc_feature;gene=trpS
AL450380.1	EMBL	sequence_feature	822171	822203	.	+	.	ID=id-trpS-2;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature;gbkey=misc_feature;gene=trpS
AL450380.1	EMBL	sequence_feature	823086	823109	.	+	.	ID=id-trpS-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=trpS
AL450380.1	EMBL	gene	823169	824110	.	+	.	ID=gene-ML0687;Name=ML0687;gbkey=Gene;gene=ML0687;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	823169	824110	.	+	0	ID=cds-CAC30196.1;Parent=gene-ML0687;Dbxref=InterPro:IPR005274,InterPro:IPR017039,UniProtKB/TrEMBL:Q7AQG0,NCBI_GP:CAC30196.1;Name=CAC30196.1;Note=Similar to M. tuberculosis Rv3335c%2C conserved hypothetical protein%2C TR:O53385 (EMBL:AL123456) (289 aa)%3B Fasta score E(): 0%2C 68.8%25 identity in 288 aa overlap. Similar to bacterial hypothetical proteins e.g. Escherichia coli yhjD%2C hypothetical protein%2C SW:YHJD_ECOLI (P37642) (337 aa)%3B Fasta score E(): 5e-30%2C 34.9%25 identity in 278 aa overlap. Previously sequenced as TR:Q49909 (EMBL:U00022) (313 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 313 aa overlap. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0687;product=putative membrane protein;protein_id=CAC30196.1;transl_table=11
AL450380.1	EMBL	pseudogene	824241	825376	.	-	.	ID=gene-nagA;Name=nagA;gbkey=Gene;gene=nagA;gene_biotype=pseudogene;gene_synonym=ML0688;pseudo=true
AL450380.1	EMBL	CDS	824241	825376	.	-	0	ID=cds-nagA;Parent=gene-nagA;Note=Possible pseudogene of M. tuberculosis orthologue nagA (Best blastx score 253);gbkey=CDS;gene=nagA;product=N-acetylglucosamine-6-P-deacetylase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	825391	826048	.	-	.	ID=gene-ML0689;Name=ML0689;gbkey=Gene;gene=ML0689;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	825391	826048	.	-	0	ID=cds-ML0689;Parent=gene-ML0689;Note=Possible pseudogene of M. tuberculosis orthologue glmS (Best blastx score 90);gbkey=CDS;gene=ML0689;product=glucosamine-fructose-6-phosphateaminotransferase(pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	826327	827763	.	-	.	ID=gene-sugI;Name=sugI;gbkey=Gene;gene=sugI;gene_biotype=pseudogene;gene_synonym=ML0690;pseudo=true
AL450380.1	EMBL	CDS	826327	827763	.	-	0	ID=cds-sugI;Parent=gene-sugI;Note=Possible pseudogene of M. tuberculosis orthologue sugI (Best blastx score 360);gbkey=CDS;gene=sugI;product=probable sugar transport protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	827601	827624	.	+	.	ID=id-AL450380.1:827601..827624;Note=24 bp direct repeat%2C Consensus%2C GATGCCGGAAAGGACCTAGTCTTA;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	827625	827648	.	+	.	ID=id-AL450380.1:827625..827648;Note=24 bp direct repeat%2C Consensus%2C GATGCCGGAAAGGACCTAGTCTTA;gbkey=repeat_region
AL450380.1	EMBL	gene	827877	829112	.	-	.	ID=gene-ML0691;Name=ML0691;gbkey=Gene;gene=ML0691;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	827877	829112	.	-	0	ID=cds-CAC30200.1;Parent=gene-ML0691;Dbxref=GOA:Q9CCM2,InterPro:IPR001967,InterPro:IPR012338,InterPro:IPR018044,UniProtKB/TrEMBL:Q9CCM2,NCBI_GP:CAC30200.1;Name=CAC30200.1;Note=Similar to M. tuberculosis Rv3330%2C putative penicillin binding protein%2C TR:O53380 (EMBL:AL123456) (405 aa)%3B Fasta score E(): 0%2C 77.2%25 identity in 416 aa overlap. Similar to PBP/D-alanyl-D-alanine carboxypeptidases e.g. Bacillus subtilis dacB%2C penicillin-binding protein 5* precursor%2C SW:DACB_BACSU (P35150) (382 aa)%3B Fasta score E(): 2.2e-15%2C 31.3%25 identity in 243 aa overlap. Previously sequenced as TR:Q49917 (EMBL:U00022) (228 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 228 aa overlap. Contains a probable N-terminal signal sequence. Contains Pfam match to entry PF00768 Peptidase_S11%2C D-alanyl-D-alanine carboxypeptidase.;gbkey=CDS;gene=ML0691;product=putative D-alanyl-D-alanine carboxypeptidase;protein_id=CAC30200.1;transl_table=11
AL450380.1	EMBL	sequence_feature	828078	828842	.	-	.	ID=id-ML0691;Note=Pfam match to entry PF00768 Peptidase_S11%2C D-alanyl-D-alanine carboxypeptidase%2C score 179.80%2C E-value 4.3e-50;gbkey=misc_feature;gene=ML0691
AL450380.1	EMBL	pseudogene	830042	831172	.	-	.	ID=gene-ML0692;Name=ML0692;gbkey=Gene;gene=ML0692;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	830042	831172	.	-	0	ID=cds-ML0692;Parent=gene-ML0692;Note=Possible pseudogene of M. tuberculosis orthologue Rv3329 (Best blastx score 840);gbkey=CDS;gene=ML0692;product=probable aminotransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	831183	831978	.	+	.	ID=gene-sigJ;Name=sigJ;gbkey=Gene;gene=sigJ;gene_biotype=pseudogene;gene_synonym=ML0693;pseudo=true
AL450380.1	EMBL	CDS	831183	831978	.	+	0	ID=cds-sigJ;Parent=gene-sigJ;Note=Possible pseudogene of M. tuberculosis orthologue sigJ (Best blastx score 342);gbkey=CDS;gene=sigJ;product=similar to SigI%2C ECF family (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	832026	832536	.	-	.	ID=gene-ML0694;Name=ML0694;gbkey=Gene;gene=ML0694;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	832026	832536	.	-	0	ID=cds-ML0694;Parent=gene-ML0694;Note=Possible pseudogene of M. tuberculosis orthologue Rv3327 (Best blastx score 175);gbkey=CDS;gene=ML0694;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	833165	833501	.	+	.	ID=gene-ML0695;Name=ML0695;gbkey=Gene;gene=ML0695;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	833165	833501	.	+	0	ID=cds-ML0695;Parent=gene-ML0695;Note=Possible pseudogene similar to M. tuberculosis Rv2893 (Best blastx score 106);gbkey=CDS;gene=ML0695;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	833872	834666	.	-	.	ID=gene-sdhB;Name=sdhB;gbkey=Gene;gene=sdhB;gene_biotype=protein_coding;gene_synonym=ML0696
AL450380.1	EMBL	CDS	833872	834666	.	-	0	ID=cds-CAC30205.1;Parent=gene-sdhB;Dbxref=GOA:Q7AQF9,InterPro:IPR001041,InterPro:IPR004489,InterPro:IPR009051,InterPro:IPR012675,InterPro:IPR017896,InterPro:IPR017900,InterPro:IPR025192,UniProtKB/TrEMBL:Q7AQF9,NCBI_GP:CAC30205.1;Name=CAC30205.1;Note=Similar to M. tuberculosis sdhB%2C Rv3319%2C succinate dehydrogenase subunit B%2C TR:O53371 (EMBL:AL123456) (263 aa)%3B Fasta score E(): 0%2C 89.8%25 identity in 264 aa overlap. Similar to many e.g. Escherichia coli sdhB%2C succinate dehydrogenase iron-sulfur protein%2C SW:DHSB_ECOLI (P07014) (238 aa)%3B Fasta score E(): 0%2C 42.9%25 identity in 240 aa overlap. Previously sequenced as TR:Q49916 (EMBL:U00022) (264 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 264 aa overlap. Contains Pfam match to entry PF00111 fer2%2C 2Fe-2S iron-sulfur cluster binding domains. Contains PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=CDS;gene=sdhB;product=succinate dehydrogenase iron-sulfur protein;protein_id=CAC30205.1;transl_table=11
AL450380.1	EMBL	sequence_feature	834103	834138	.	-	.	ID=id-sdhB;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;gene=sdhB
AL450380.1	EMBL	sequence_feature	834349	834516	.	-	.	ID=id-sdhB-2;Note=Pfam match to entry PF00111 fer2%2C 2Fe-2S iron-sulfur cluster binding domains%2C score 5.80%2C E-value 1.8;gbkey=misc_feature;gene=sdhB
AL450380.1	EMBL	gene	834666	836420	.	-	.	ID=gene-sdhA;Name=sdhA;gbkey=Gene;gene=sdhA;gene_biotype=protein_coding;gene_synonym=ML0697
AL450380.1	EMBL	CDS	834666	836420	.	-	0	ID=cds-CAC30206.1;Parent=gene-sdhA;Dbxref=GOA:Q9CCM1,InterPro:IPR003952,InterPro:IPR003953,InterPro:IPR011281,InterPro:IPR014006,InterPro:IPR015939,InterPro:IPR027477,UniProtKB/TrEMBL:Q9CCM1,NCBI_GP:CAC30206.1;Name=CAC30206.1;Note=Similar to M. tuberculosis sdhA%2C Rv3318%2C succinate dehydrogenase subunit A%2C TR:O53370 (EMBL:AL123456) (590 aa)%3B Fasta score E(): 0%2C 92.5%25 identity in 590 aa overlap. Similar to many e.g. Escherichia coli sdhA%2C succinate dehydrogenase flavoprotein subunit%2C SW:DHSA_ECOLI (P10444) (588 aa)%3B Fasta score E(): 0%2C 48.6%25 identity in 589 aa overlap. Previously sequenced as TR:Q49924 (EMBL:U00022) (401 aa)%3B Fasta score E(): 0%2C 97.2%25 identity in 395 aa overlap. Contains Pfam match to entry PF00890 FAD_binding_2%2C FAD binding domain. Contains PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site.;gbkey=CDS;gene=sdhA;product=succinate dehydrogenase flavoprotein subunit;protein_id=CAC30206.1;transl_table=11
AL450380.1	EMBL	sequence_feature	835116	836105	.	-	.	ID=id-sdhA;Note=Pfam match to entry PF00890 FAD_binding_2%2C FAD binding domain%2C score 590.20%2C E-value 1.2e-173;gbkey=misc_feature;gene=sdhA
AL450380.1	EMBL	sequence_feature	836271	836300	.	-	.	ID=id-sdhA-2;Note=PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site;gbkey=misc_feature;gene=sdhA
AL450380.1	EMBL	gene	836441	836932	.	-	.	ID=gene-sdhD;Name=sdhD;gbkey=Gene;gene=sdhD;gene_biotype=protein_coding;gene_synonym=ML0698
AL450380.1	EMBL	CDS	836441	836932	.	-	0	ID=cds-CAC30207.1;Parent=gene-sdhD;Dbxref=GOA:Q7AQF8,InterPro:IPR000701,UniProtKB/TrEMBL:Q7AQF8,NCBI_GP:CAC30207.1;Name=CAC30207.1;Note=Similar to M. tuberculosis sdhD%2C Rv3317%2C putative membrane anchor of succinate dehydrogenase%2C TR:O53369 (EMBL:AL123456) (144 aa)%3B Fasta score E(): 0%2C 85.2%25 identity in 142 aa overlap. Shows weak similarity to e.g. Rickettsia prowazekii sdhD%2C succinate dehydrogenase hydrophobic membrane anchor protein%2C SW:DHSD_RICPR (P41086) (125 aa)%3B Fasta score E(): 0.24%2C 26.7%25 identity in 105 aa overlap. Previously sequenced as TR:Q49915 (EMBL:U00022) (163 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 163 aa overlap.Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=sdhD;product=putative succinate dehydrogenase hydrophobic membrane anchor protei;protein_id=CAC30207.1;transl_table=11
AL450380.1	EMBL	gene	836929	837390	.	-	.	ID=gene-sdhC;Name=sdhC;gbkey=Gene;gene=sdhC;gene_biotype=protein_coding;gene_synonym=ML0699
AL450380.1	EMBL	CDS	836929	837390	.	-	0	ID=cds-CAC30208.1;Parent=gene-sdhC;Dbxref=GOA:Q9CCM0,InterPro:IPR000701,InterPro:IPR014314,UniProtKB/TrEMBL:Q9CCM0,NCBI_GP:CAC30208.1;Name=CAC30208.1;Note=Similar to M. tuberculosis sdhC%2C Rv3316%2C putative membrane anchor of succinate dehydrogenase%2C TR:O53368 (EMBL:AL123456) (112 aa)%3B Fasta score E(): 0%2C 88.4%25 identity in 112 aa overlap. Similar to many e.g. Escherichia coli sdhC%2C succinate dehydrogenase cytochrome B-556%2C SW:DHSC_ECOLI (P10446) (129 aa)%3B Fasta score E(): 0.074%2C 24.3%25 identity in 136 aa overlap. Previously sequenced as TR:Q49919 (EMBL:U00022) (244 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 153 aa overlap. Contains Pfam match to entry PF01127 Sdh_cyt%2C Succinate dehydrogenase cytochrome b subunit.;gbkey=CDS;gene=sdhC;product=putative succinate dehydrogenase cytochrome B-556 subunit;protein_id=CAC30208.1;transl_table=11
AL450380.1	EMBL	sequence_feature	837001	837330	.	-	.	ID=id-sdhC;Note=Pfam match to entry PF01127 Sdh_cyt%2C Succinate dehydrogenase cytochrome b subunit%2C score -28.10%2C E-value 0.051;gbkey=misc_feature;gene=sdhC
AL450380.1	EMBL	gene	837679	838767	.	+	.	ID=gene-add;Name=add;gbkey=Gene;gene=add;gene_biotype=protein_coding;gene_synonym=ML0700
AL450380.1	EMBL	CDS	837679	838767	.	+	0	ID=cds-CAC30209.1;Parent=gene-add;Dbxref=GOA:Q9CCL9,InterPro:IPR001365,InterPro:IPR006330,InterPro:IPR028893,NCBI_GP:CAC30209.1;Name=CAC30209.1;Note=Similar to M. tuberculosis add%2C Rv3313c%2C probable adenosine deaminase%2C TR:O53365 (EMBL:AL123456) (365 aa)%3B Fasta score E(): 0%2C 88.2%25 identity in 356 aa overlap. Similar to many e.g. Escherichia coli add%2C adenosine deaminase%2C SW:ADD_ECOLI (P22333) (333 aa)%3B Fasta score E(): 6.8e-19%2C 29.7%25 identity in 340 aa overlap. Previously sequenced as TR:Q49907 (EMBL:U00022) (332 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 332 aa overlap. Contains Pfam match to entry PF00962 A_deaminase%2C Adenosine/AMP deaminase.;gbkey=CDS;gene=add;product=putative adenosine deaminase;protein_id=CAC30209.1;transl_table=11
AL450380.1	EMBL	sequence_feature	837691	838731	.	+	.	ID=id-add;Note=Pfam match to entry PF00962 A_deaminase%2C Adenosine/AMP deaminase%2C score 395.60%2C E-value 4.8e-115;gbkey=misc_feature;gene=add
AL450380.1	EMBL	pseudogene	838834	839852	.	+	.	ID=gene-ML0701;Name=ML0701;gbkey=Gene;gene=ML0701;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	838834	839852	.	+	0	ID=cds-ML0701;Parent=gene-ML0701;Note=Possible pseudogene of M. tuberculosis paralog Rv1481 (Best blastx score 222);gbkey=CDS;gene=ML0701;product=possible membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	839856	840813	.	-	.	ID=gene-ML0702;Name=ML0702;gbkey=Gene;gene=ML0702;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	839856	840813	.	-	0	ID=cds-ML0702;Parent=gene-ML0702;Note=Possible pseudogene of M. tuberculosis paralog Rv1481 (Best blastx score 92);gbkey=CDS;gene=ML0702;product=possible membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	840882	842153	.	-	.	ID=gene-ML0703;Name=ML0703;gbkey=Gene;gene=ML0703;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	840882	842153	.	-	0	ID=cds-CAC30212.1;Parent=gene-ML0703;Dbxref=UniProtKB/TrEMBL:Q9CCL8,NCBI_GP:CAC30212.1;Name=CAC30212.1;Note=Similar to M. tuberculosis Rv3311%2C conserved hypothetical protein%2C TR:O53362 (EMBL:AL123456) (420 aa)%3B Fasta score E(): 0%2C 77.5%25 identity in 423 aa overlap.;gbkey=CDS;gene=ML0703;product=conserved hypothetical protein;protein_id=CAC30212.1;transl_table=11
AL450380.1	EMBL	pseudogene	842232	843069	.	-	.	ID=gene-ML0704;Name=ML0704;gbkey=Gene;gene=ML0704;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	842232	843069	.	-	0	ID=cds-ML0704;Parent=gene-ML0704;Note=Possible pseudogene of M. tuberculosis orthologue Rv3310 (Best blastx score 491);gbkey=CDS;gene=ML0704;product=probable acid phosphatase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	843205	843831	.	+	.	ID=gene-upp;Name=upp;gbkey=Gene;gene=upp;gene_biotype=pseudogene;gene_synonym=ML0705;pseudo=true
AL450380.1	EMBL	CDS	843205	843831	.	+	0	ID=cds-upp;Parent=gene-upp;Note=Possible pseudogene of M. tuberculosis orthologue upp (Best blastx score 251);gbkey=CDS;gene=upp;product=uracil phophoribosyltransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	843847	845463	.	-	.	ID=gene-pmmB;Name=pmmB;gbkey=Gene;gene=pmmB;gene_biotype=protein_coding;gene_synonym=ML0706
AL450380.1	EMBL	CDS	843847	845463	.	-	0	ID=cds-CAC30215.1;Parent=gene-pmmB;Dbxref=GOA:Q9CCL7,InterPro:IPR005841,InterPro:IPR005843,InterPro:IPR005844,InterPro:IPR005845,InterPro:IPR005846,InterPro:IPR016055,InterPro:IPR016066,UniProtKB/TrEMBL:Q9CCL7,NCBI_GP:CAC30215.1;Name=CAC30215.1;Note=Similar to M. tuberculosis pmmB%2C putative phosphomannomutase%2C TR:O53360 (EMBL:AL123456) (534 aa)%3B Fasta score E(): 0%2C 76.8%25 identity in 538 aa overlap. Similar to many putative phospho-sugar mutases and to Streptococcus pneumoniae pgm%2C phosphoglucomutase involved in type 3 capsule production and basic metabolism%2C TR:Q9RP94 (EMBL:AF165218) (572 aa)%3B Fasta score E(): 1.4e-19%2C 32.6%25 identity in 549 aa overlap. Previously sequenced as TR:Q49913 (EMBL:U00022) (534 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 534 aa overlap. Contains Pfam match to entry PF00408 PGM_PMM%2C Phosphoglucomutase/phosphomannomutase. Contains PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature.%3B~Shows weak similarity to ML0366 and ML0763;gbkey=CDS;gene=pmmB;product=putative phospho-sugar mutase;protein_id=CAC30215.1;transl_table=11
AL450380.1	EMBL	sequence_feature	843916	845355	.	-	.	ID=id-pmmB;Note=Pfam match to entry PF00408 PGM_PMM%2C Phosphoglucomutase/phosphomannomutase%2C score 109.30%2C E-value 7.4e-29;gbkey=misc_feature;gene=pmmB
AL450380.1	EMBL	sequence_feature	845014	845058	.	-	.	ID=id-pmmB-2;Note=PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature;gbkey=misc_feature;gene=pmmB
AL450380.1	EMBL	gene	845460	846266	.	-	.	ID=gene-deoD;Name=deoD;gbkey=Gene;gene=deoD;gene_biotype=protein_coding;gene_synonym=ML0707
AL450380.1	EMBL	CDS	845460	846266	.	-	0	ID=cds-CAC30216.1;Parent=gene-deoD;Dbxref=GOA:P46862,InterPro:IPR000845,InterPro:IPR001369,InterPro:IPR011268,InterPro:IPR011269,InterPro:IPR018099,NCBI_GP:CAC30216.1;Name=CAC30216.1;Note=Similar to M. tuberculosis deoD%2C Rv3307%2C probable purine nucleoside phosphorylase%2C SW:PUNA_MYCTU (O53359) (268 aa)%3B Fasta score E(): 0%2C 82.1%25 identity in 262 aa overlap. Similar to many e.g. Bacillus stearothermophilus deoD%2C purine nucleoside phosphorylase I%2C SW:PUNA_BACST (P77834) (274 aa)%3B Fasta score E(): 1.3e-16%2C 43.1%25 identity in 246 aa overlap. Previously sequenced as SW:PUNA_MYCLE (P46862) (268 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 268 aa overlap. Contains Pfam match to entry PF00896 Mtap_PNP%2C phosphorylases family 2. Contains PS01240 Purine and other phosphorylases family 2 signature.;gbkey=CDS;gene=deoD;product=putative purine nucleoside phosphorylase;protein_id=CAC30216.1;transl_table=11
AL450380.1	EMBL	sequence_feature	845574	846179	.	-	.	ID=id-deoD;Note=Pfam match to entry PF00896 Mtap_PNP%2C phosphorylases family 2%2C score 357.90%2C E-value 1e-103;gbkey=misc_feature;gene=deoD
AL450380.1	EMBL	sequence_feature	845895	846020	.	-	.	ID=id-deoD-2;Note=PS01240 Purine and other phosphorylases family 2 signature;gbkey=misc_feature;gene=deoD
AL450380.1	EMBL	pseudogene	846400	847610	.	+	.	ID=gene-amiB;Name=amiB;gbkey=Gene;gene=amiB;gene_biotype=pseudogene;gene_synonym=ML0708;pseudo=true
AL450380.1	EMBL	CDS	846400	847610	.	+	0	ID=cds-amiB;Parent=gene-amiB;Note=Possible pseudogene of M. tuberculosis orthologue amiB (Best blastx score 355);gbkey=CDS;gene=amiB;product=probable aminohydrolase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	847093	847113	.	+	.	ID=id-amiB;Note=21 bp direct repeat%2C Consensus%2C GTAATCCCGCGGACACGCGGC;gbkey=repeat_region;gene=amiB;pseudo=true
AL450380.1	EMBL	repeat_region	847114	847134	.	+	.	ID=id-amiB-2;Note=21 bp direct repeat%2C Consensus%2C GTAATCCCGCGGACACGCGGC;gbkey=repeat_region;gene=amiB;pseudo=true
AL450380.1	EMBL	pseudogene	847645	848747	.	+	.	ID=gene-amiA;Name=amiA;gbkey=Gene;gene=amiA;gene_biotype=pseudogene;gene_synonym=ML0709;pseudo=true
AL450380.1	EMBL	CDS	847645	848747	.	+	0	ID=cds-amiA;Parent=gene-amiA;Note=Possible pseudogene of M. tuberculosis orthologue amiA (Best blastx score 489);gbkey=CDS;gene=amiA;product=probable aminohydrolase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	848943	849542	.	+	.	ID=gene-ML0710;Name=ML0710;gbkey=Gene;gene=ML0710;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	848943	849542	.	+	0	ID=cds-ML0710;Parent=gene-ML0710;Note=Possible pseudogene of M. tuberculosis paralog Rv2248 (Best blastx score 255);gbkey=CDS;gene=ML0710;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	849828	850307	.	-	.	ID=gene-ML0711;Name=ML0711;gbkey=Gene;gene=ML0711;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	849828	850307	.	-	0	ID=cds-CAC30220.1;Parent=gene-ML0711;Dbxref=GOA:Q9CCL6,InterPro:IPR013024,InterPro:IPR017939,UniProtKB/TrEMBL:Q9CCL6,NCBI_GP:CAC30220.1;Name=CAC30220.1;Note=Similar to M. tuberculosis Rv3304%2C conserved hypothetical protein%2C TR:O53356 (EMBL:AL123456) (159 aa)%3B Fasta score E(): 0%2C 91.8%25 identity in 159 aa overlap. Shows weak similarity to Azotobacter vinelandii hypothetical protein%2C TR:Q44546 (EMBL:M23528) (183 aa)%3B Fasta score E(): 1.3e-06%2C 30.1%25 identity in 146 aa overlap and Homo sapiens WUGSC:H_DJ0777O23.1%2C hypothetical protein%2C TR:O75223 (EMBL:AC005154) (188 aa)%3B Fasta score E(): 4.9e-06%2C 26.8%25 identity in 149 aa overlap. Previously sequenced as TR:Q49927 (EMBL:U00022) (174 aa)%3B Fasta score E(): 0%2C 98.7%25 identity in 149 aa overlap.;gbkey=CDS;gene=ML0711;product=conserved hypothetical protein;protein_id=CAC30220.1;transl_table=11
AL450380.1	EMBL	pseudogene	850436	851854	.	+	.	ID=gene-lpdA;Name=lpdA;gbkey=Gene;gene=lpdA;gene_biotype=pseudogene;gene_synonym=ML0712;pseudo=true
AL450380.1	EMBL	CDS	850436	851854	.	+	0	ID=cds-lpdA;Parent=gene-lpdA;Note=Possible pseudogene of M. tuberculosis orthologue lpdA (Best blastx score 410);gbkey=CDS;gene=lpdA;product=dihydrolipoamide dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	851933	851937	.	+	.	ID=id-AL450380.1:851933..851937;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	851948	853705	.	+	.	ID=gene-glpD;Name=glpD;gbkey=Gene;gene=glpD;gene_biotype=protein_coding;gene_synonym=ML0713
AL450380.1	EMBL	CDS	851948	853705	.	+	0	ID=cds-CAC30222.1;Parent=gene-glpD;Dbxref=GOA:P53435,InterPro:IPR000447,InterPro:IPR006076,NCBI_GP:CAC30222.1;Name=CAC30222.1;Note=Similar to M. tuberculosis glpD2%2C Rv3302c%2C glycerol-3-phosphate dehydrogenase%2C TR:O07168 (EMBL:AL123456) (585 aa)%3B Fasta score E(): 0%2C 90.8%25 identity in 584 aa overlap. Similar to many e.g. Escherichia coli%2C glpD%2C glycerol-3-phosphate dehydrogenase%2C SW:GLPD_ECOLI (P13035) (501 aa)%3B Fasta score E(): 0%2C 35.2%25 identity in 492 aa overlap. Also similar to Brucella abortus eriB%2C erythritol phosphate dehydrogenase%2C TR:Q9ZB31 (EMBL:U57100) (502 aa)%3B Fasta score E(): 0%2C 35.4%25 identity in 483 aa overlap. Previously sequenced as SW:GLPD_MYCLE (P53435) (585 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 585 aa overlap. Contains Pfam match to entry PF01224 FAD_Gly3P_dh%2C FAD-dependent glycerol-3-phosphate dehydrogenase. Contains PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. Contains PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1.;gbkey=CDS;gene=glpD;product=putative glycerol-3-phosphate dehydrogenase;protein_id=CAC30222.1;transl_table=11
AL450380.1	EMBL	sequence_feature	852044	853639	.	+	.	ID=id-glpD;Note=Pfam match to entry PF01224 FAD_Gly3P_dh%2C FAD-dependent glycerol-3-phosphate dehydrogenase%2C score 994.40%2C E-value 2.7e-295;gbkey=misc_feature;gene=glpD
AL450380.1	EMBL	sequence_feature	852068	852121	.	+	.	ID=id-glpD-2;Note=PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1;gbkey=misc_feature;gene=glpD
AL450380.1	EMBL	sequence_feature	853100	853132	.	+	.	ID=id-glpD-3;Note=PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2;gbkey=misc_feature;gene=glpD
AL450380.1	EMBL	pseudogene	853693	854513	.	+	.	ID=gene-ML0714;Name=ML0714;gbkey=Gene;gene=ML0714;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	853693	854513	.	+	0	ID=cds-ML0714;Parent=gene-ML0714;Note=Possible pseudogene of M. tuberculosis orthologue Rv3300c (Best blastx score 559);gbkey=CDS;gene=ML0714;product=probable deaminase%2C riboflavin synthesis (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	854776	855690	.	+	.	ID=gene-lpqC;Name=lpqC;gbkey=Gene;gene=lpqC;gene_biotype=protein_coding;gene_synonym=ML0715
AL450380.1	EMBL	CDS	854776	855690	.	+	0	ID=cds-CAC30224.1;Parent=gene-lpqC;Dbxref=GOA:Q9CCL5,InterPro:IPR029058,UniProtKB/TrEMBL:Q9CCL5,NCBI_GP:CAC30224.1;Name=CAC30224.1;Note=Similar to M. tuberculosis lpqC%2C Rv3298c%2C hypothetical protein%2C TR:P96903 (EMBL:AL123456) (304 aa)%3B Fasta score E(): 0%2C 72.0%25 identity in 300 aa overlap. Shows weak similarity to hydrolases e.g. Piromyces equi estA%2C cinnamoyl ester hydrolase%2C TR:Q9Y871 (EMBL:AF164516) (536 aa)%3B Fasta score E(): 4.8e-12%2C 27.9%25 identity in 265 aa overlap and Pseudomonas lemoignei phaZ1%2C secreted poly(3-hydroxyalkanoate) depolymerase C precursor%2C SW:PHA1_PSELE (P52090) (414 aa)%3B Fasta score E(): 2.5e-06%2C 25.6%25 identity in 320 aa overlap. Previously sequenced as TR:Q49658 (EMBL:U00012) (302 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 302 aa overlap. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=lpqC;product=putative secreted hydrolase;protein_id=CAC30224.1;transl_table=11
AL450380.1	EMBL	pseudogene	856124	859813	.	-	.	ID=gene-lhr;Name=lhr;gbkey=Gene;gene=lhr;gene_biotype=pseudogene;gene_synonym=ML0716;pseudo=true
AL450380.1	EMBL	CDS	856124	859813	.	-	0	ID=cds-lhr;Parent=gene-lhr;Note=Possible pseudogene of M. tuberculosis orthologue lhr (Best blastx score 824);gbkey=CDS;gene=lhr;product=ATP-dependent helicase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	859917	860588	.	-	.	ID=gene-ML0717;Name=ML0717;gbkey=Gene;gene=ML0717;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	859917	860588	.	-	0	ID=cds-CAC30226.1;Parent=gene-ML0717;Dbxref=GOA:Q9CCL4,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR015893,UniProtKB/TrEMBL:Q9CCL4,NCBI_GP:CAC30226.1;Name=CAC30226.1;Note=Similar to M. tuberculosis Rv3295%2C putative TetR-family transcriptional regulator%2C TR:P96900 (EMBL:AL123456) (221 aa)%3B Fasta score E(): 0%2C 85.5%25 identity in 220 aa overlap. Similar to many putative transcriptional regulators. Similar to Streptomyces tendae tarA%2C gamma-butyrolactone-binding protein%2C TR:Q9RPK9 (Expect %3D 5.0e-05). Previously sequenced as TR:Q49662 (EMBL:U00012) (242 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 223 aa overlap. Contains a probable helix-turn-helix motif at aa 33-54 (Score 1535%2C SD +4.42) Contains Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family.;gbkey=CDS;gene=ML0717;product=putative TetR-family transcriptional regulator;protein_id=CAC30226.1;transl_table=11
AL450380.1	EMBL	sequence_feature	860400	860540	.	-	.	ID=id-ML0717;Note=Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family%2C score 61.40%2C E-value 2e-14;gbkey=misc_feature;gene=ML0717
AL450380.1	EMBL	pseudogene	860656	861952	.	-	.	ID=gene-aldB;Name=aldB;gbkey=Gene;gene=aldB;gene_biotype=pseudogene;gene_synonym=ML0718;pseudo=true
AL450380.1	EMBL	CDS	860656	861952	.	-	0	ID=cds-aldB;Parent=gene-aldB;Note=Possible pseudogene of M. tuberculosis orthologue aldB (Best blastx score 421);gbkey=CDS;gene=aldB;product=aldehyde dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	862129	863299	.	-	.	ID=gene-ML0719;Name=ML0719;gbkey=Gene;gene=ML0719;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	862129	863299	.	-	0	ID=cds-ML0719;Parent=gene-ML0719;Note=Possible pseudogene of M. tuberculosis orthologue Rv3292 (Best blastx score 499);gbkey=CDS;gene=ML0719;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	863378	863778	.	+	.	ID=gene-ML0720;Name=ML0720;gbkey=Gene;gene=ML0720;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	863378	863778	.	+	0	ID=cds-ML0720;Parent=gene-ML0720;Note=Possible pseudogene of M. tuberculosis orthologue Rv3291c (Best blastx score 358);gbkey=CDS;gene=ML0720;product=transcriptional regulator (Lrp/AsnC family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	863877	865225	.	+	.	ID=gene-lat;Name=lat;gbkey=Gene;gene=lat;gene_biotype=pseudogene;gene_synonym=ML0721;pseudo=true
AL450380.1	EMBL	CDS	863877	865225	.	+	0	ID=cds-lat;Parent=gene-lat;Note=Possible pseudogene of M. tuberculosis orthologue lat (Best blastx score 509);gbkey=CDS;gene=lat;product=lysine-[epsilon] aminotransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	865371	865700	.	+	.	ID=gene-ML0722;Name=ML0722;gbkey=Gene;gene=ML0722;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	865371	865700	.	+	0	ID=cds-ML0722;Parent=gene-ML0722;Note=Possible pseudogene of M. tuberculosis orthologue Rv3289c (Best blastx score 261);gbkey=CDS;gene=ML0722;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	865725	866096	.	+	.	ID=gene-ML0723;Name=ML0723;gbkey=Gene;gene=ML0723;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	865725	866096	.	+	0	ID=cds-ML0723;Parent=gene-ML0723;Note=Possible pseudogene of M. tuberculosis orthologue Rv3288c (Best blastx score 210);gbkey=CDS;gene=ML0723;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	866036	866821	.	+	.	ID=gene-rsbW;Name=rsbW;gbkey=Gene;gene=rsbW;gene_biotype=pseudogene;gene_synonym=ML0724;pseudo=true
AL450380.1	EMBL	CDS	866036	866821	.	+	0	ID=cds-rsbW;Parent=gene-rsbW;Note=Possible pseudogene of M. tuberculosis orthologue rsbW (Best blastx score 286);gbkey=CDS;gene=rsbW;product=anti-sigma B factor (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	866917	867685	.	+	.	ID=gene-sigF;Name=sigF;gbkey=Gene;gene=sigF;gene_biotype=pseudogene;gene_synonym=ML0725;pseudo=true
AL450380.1	EMBL	CDS	866917	867685	.	+	0	ID=cds-sigF;Parent=gene-sigF;Note=Possible pseudogene of M. tuberculosis orthologue sigF (Best blastx score 406);gbkey=CDS;gene=sigF;product=ECF subfamily sigma subunit (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	867696	869492	.	-	.	ID=gene-bccA;Name=bccA;gbkey=Gene;gene=bccA;gene_biotype=protein_coding;gene_synonym=ML0726
AL450380.1	EMBL	CDS	867696	869492	.	-	0	ID=cds-CAC30235.1;Parent=gene-bccA;Dbxref=GOA:P46392,InterPro:IPR000089,InterPro:IPR001882,InterPro:IPR005479,InterPro:IPR005481,InterPro:IPR005482,InterPro:IPR011053,InterPro:IPR011054,InterPro:IPR011761,InterPro:IPR011764,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,NCBI_GP:CAC30235.1;Name=CAC30235.1;Note=Similar to M. tuberculosis accA3%2C Rv3285%2C acetyl/propionyl CoA carboxylase [alpha] subunit%2C TR:P96890 (EMBL:AL123456) (600 aa)%3B Fasta score E(): 0%2C 88.7%25 identity in 601 aa overlap. Previously sequenced as SW:BCCA_MYCLE (P46392) (598 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 598 aa overlap. Contains Pfam match to entry PF00364 biotin_lipoyl%2C Biotin-requiring enzymes. Contains Pfam match to entry PF00289 CPSase_L_chain%2C Carbamoyl-phosphate synthase (CPSase). Contains PS00867 Carbamoyl-phosphate synthase subdomain signature 2. Contains PS00866 Carbamoyl-phosphate synthase subdomain signature 1. Contains PS00188 Biotin-requiring enzymes attachment site.;gbkey=CDS;gene=bccA;product=acetyl/propionyl CoA carboxylase [alpha] subunit;protein_id=CAC30235.1;transl_table=11
AL450380.1	EMBL	sequence_feature	867702	867905	.	-	.	ID=id-bccA;Note=Pfam match to entry PF00364 biotin_lipoyl%2C Biotin-requiring enzymes%2C score 88.00%2C E-value 1.9e-22;gbkey=misc_feature;gene=bccA
AL450380.1	EMBL	sequence_feature	867780	867833	.	-	.	ID=id-bccA-2;Note=PS00188 Biotin-requiring enzymes attachment site;gbkey=misc_feature;gene=bccA
AL450380.1	EMBL	sequence_feature	868362	869462	.	-	.	ID=id-bccA-3;Note=Pfam match to entry PF00289 CPSase_L_chain%2C Carbamoyl-phosphate synthase (CPSase)%2C score 668.20%2C E-value 4.1e-197;gbkey=misc_feature;gene=bccA
AL450380.1	EMBL	sequence_feature	868593	868616	.	-	.	ID=id-bccA-4;Note=PS00867 Carbamoyl-phosphate synthase subdomain signature 2;gbkey=misc_feature;gene=bccA
AL450380.1	EMBL	sequence_feature	868971	869015	.	-	.	ID=id-bccA-5;Note=PS00866 Carbamoyl-phosphate synthase subdomain signature 1;gbkey=misc_feature;gene=bccA
AL450380.1	EMBL	ribosome_entry_site	869497	869502	.	-	.	ID=id-AL450380.1:869497..869502;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	869612	870011	.	-	.	ID=gene-ML0727;Name=ML0727;gbkey=Gene;gene=ML0727;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	869612	870011	.	-	0	ID=cds-ML0727;Parent=gene-ML0727;Note=Possible pseudogene of M. tuberculosis orthologue Rv3284 (Best blastx score 203);gbkey=CDS;gene=ML0727;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	870028	870918	.	-	.	ID=gene-sseA;Name=sseA;gbkey=Gene;gene=sseA;gene_biotype=protein_coding;gene_synonym=ML0728
AL450380.1	EMBL	CDS	870028	870918	.	-	0	ID=cds-CAC30237.1;Parent=gene-sseA;Dbxref=GOA:P46700,InterPro:IPR001307,InterPro:IPR001763,NCBI_GP:CAC30237.1;Name=CAC30237.1;Note=Similar to M. tuberculosis sseA%2C Rv3283%2C putative thiosulfate sulfurtransferase%2C SW:THT2_MYCTU (P96888) (297 aa)%3B Fasta score E(): 0%2C 83.4%25 identity in 296 aa overlap. Similar to many e.g. Azotobacter vinelandii rhdA%2C thiosulfate sulfurtransferase%2C SW:THTR_AZOVI (P52197) (271 aa)%3B Fasta score E(): 1.1e-18%2C 33.5%25 identity in 269 aa overlap. Previously sequenced as SW:THT2_MYCLE (P46700) (296 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 296 aa overlap. Contains 2 Pfam matches to entry PF00581 Rhodanese%2C Rhodanese-like domain. Contains PS00380 Rhodanese signature 1. Contains PS00683 Rhodanese C-terminal signature.%3B~Similar to ML2198;gbkey=CDS;gene=sseA;product=putative thiosulfate sulfurtransferase;protein_id=CAC30237.1;transl_table=11
AL450380.1	EMBL	sequence_feature	870079	870438	.	-	.	ID=id-sseA;Note=Pfam match to entry PF00581 Rhodanese%2C Rhodanese-like domain%2C score 108.90%2C E-value 9.9e-29;gbkey=misc_feature;gene=sseA
AL450380.1	EMBL	sequence_feature	870088	870120	.	-	.	ID=id-sseA-2;Note=PS00683 Rhodanese C-terminal signature;gbkey=misc_feature;gene=sseA
AL450380.1	EMBL	sequence_feature	870523	870855	.	-	.	ID=id-sseA-3;Note=Pfam match to entry PF00581 Rhodanese%2C Rhodanese-like domain%2C score 109.10%2C E-value 8.5e-29;gbkey=misc_feature;gene=sseA
AL450380.1	EMBL	sequence_feature	870745	870780	.	-	.	ID=id-sseA-4;Note=PS00380 Rhodanese signature 1;gbkey=misc_feature;gene=sseA
AL450380.1	EMBL	ribosome_entry_site	870934	870939	.	-	.	ID=id-AL450380.1:870934..870939;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	871119	871760	.	-	.	ID=gene-ML0729;Name=ML0729;gbkey=Gene;gene=ML0729;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	871119	871760	.	-	0	ID=cds-CAC30238.1;Parent=gene-ML0729;Dbxref=GOA:Q49670,InterPro:IPR003697,InterPro:IPR029001,NCBI_GP:CAC30238.1;Name=CAC30238.1;Note=Similar to M. tuberculosis Rv3282%2C conserved hypothetical protein%2C TR:P96887 (EMBL:AL123456) (222 aa)%3B Fasta score E(): 0%2C 68.5%25 identity in 213 aa overlap. Similar to maf-family proteins e.g. Bacillus subtilis maf%2C protein involved in septum formation%2C SW:MAF_BACSU (Q02169) (189 aa)%3B Fasta score E(): 4.8e-08%2C 29.1%25 identity in 196 aa overlap. Also similar to the N-terminal half of Homo sapiens asmtl%2C acetylserotonin methytransferase-like gene%2C TR:O95671 (EMBL:Y15521) (629 aa)%3B Fasta score E(): 2.1e-09%2C 31.6%25 identity in 193 aa overlap. Previously sequenced as TR:Q49670 (EMBL:U00012) (213 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 213 aa overlap.;gbkey=CDS;gene=ML0729;product=conserved hypothetical protein;protein_id=CAC30238.1;transl_table=11
AL450380.1	EMBL	gene	871757	872011	.	-	.	ID=gene-ML0730;Name=ML0730;gbkey=Gene;gene=ML0730;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	871757	872011	.	-	0	ID=cds-CAC30239.1;Parent=gene-ML0730;Dbxref=UniProtKB/TrEMBL:Q7AQF7,NCBI_GP:CAC30239.1;Name=CAC30239.1;Note=Similar to Mycobacterium tuberculosis hypothetical 19.0 kda protein RV3281 OR MTCY71.21 TR:P96886 (EMBL:Z92771) fasta scores: E(): 2.4e-22%2C 69.0%25 id in 87 aa. Previously sequenced as TR:Q49671 (EMBL:U00012). Contains Pfam match to entry PF01039 Carboxyl_trans%2C Carboxyl transferase domain.;gbkey=CDS;gene=ML0730;product=CAC30239.1;protein_id=CAC30239.1;transl_table=11
AL450380.1	EMBL	gene	872008	873657	.	-	.	ID=gene-accD5;Name=accD5;gbkey=Gene;gene=accD5;gene_biotype=protein_coding;gene_synonym=ML0731
AL450380.1	EMBL	CDS	872008	873657	.	-	0	ID=cds-CAC30240.1;Parent=gene-accD5;Dbxref=GOA:P53002,InterPro:IPR000022,InterPro:IPR011762,InterPro:IPR011763,InterPro:IPR029045,NCBI_GP:CAC30240.1;Name=CAC30240.1;Note=Similar to Mycobacterium tuberculosis pccb PCCB OR RV3280 OR MTCY71.20 TR:P96885 (EMBL:Z92771) fasta scores: E(): 0%2C 88.7%25 id in 549 aa%2C and to Saccharopolyspora erythraea propionyl-CoA carboxylase beta chain PCCB SW:PCCB_SACER (P53003) fasta scores: E(): 0%2C 69.1%25 id in 530 aa. Previously sequenced as SW:PCCB_MYCLE (P53002). Contains Pfam match to entry PF01039 Carboxyl_trans%2C Carboxyl transferase domain.%3B~Similar to ML0102 and ML1657;gbkey=CDS;gene=accD5;product=acetyl/propionyl CoA carboxylase [beta] subunit;protein_id=CAC30240.1;transl_table=11
AL450380.1	EMBL	sequence_feature	872011	873555	.	-	.	ID=id-accD5;Note=Pfam match to entry PF01039 Carboxyl_trans%2C Carboxyl transferase domain%2C score 915.00%2C E-value 2.1e-271;gbkey=misc_feature;gene=accD5
AL450380.1	EMBL	ribosome_entry_site	873710	873714	.	+	.	ID=id-AL450380.1:873710..873714;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	873720	874544	.	+	.	ID=gene-birA;Name=birA;gbkey=Gene;gene=birA;gene_biotype=protein_coding;gene_synonym=ML0732
AL450380.1	EMBL	CDS	873720	874544	.	+	0	ID=cds-CAC30241.1;Parent=gene-birA;Dbxref=GOA:Q9CCL3,InterPro:IPR003142,InterPro:IPR004143,InterPro:IPR004408,UniProtKB/TrEMBL:Q9CCL3,NCBI_GP:CAC30241.1;Name=CAC30241.1;Note=Similar to Mycobacterium tuberculosis birA OR RV3279C OR MTCY71.19C TR:P96884 (EMBL:Z92771) fasta scores: E(): 0%2C 71.2%25 id in 271 aa%2C and to Escherichia coli birA bifunctional protein [includes: biotin operon repressor%3B biotin--[acetyl-coa-carboxylase] synthetase birA OR bioR OR dhbB SW:BIRA_ECOLI (P06709) fasta scores: E(): 2e-10%2C 31.3%25 id in 256 aa. Lacks the N-terminal helix-turn-helix domain%2C so may not act as a repressor. Contains Pfam match to entry PF01317 BPL%2C Biotin protein ligase.;gbkey=CDS;gene=birA;product=biotin apo-protein ligase;protein_id=CAC30241.1;transl_table=11
AL450380.1	EMBL	sequence_feature	873792	874538	.	+	.	ID=id-birA;Note=Pfam match to entry PF01317 BPL%2C Biotin protein ligase%2C score 265.60%2C E-value 6.4e-76;gbkey=misc_feature;gene=birA
AL450380.1	EMBL	gene	874677	875195	.	+	.	ID=gene-ML0733;Name=ML0733;gbkey=Gene;gene=ML0733;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	874677	875195	.	+	0	ID=cds-CAC30242.1;Parent=gene-ML0733;Dbxref=InterPro:IPR005182,UniProtKB/TrEMBL:Q9CCL2,NCBI_GP:CAC30242.1;Name=CAC30242.1;Note=Similar to Mycobacterium tuberculosis hypothetical 19.8 kda protein RV3278C OR MTCY71.18C TR:P96883 (EMBL:Z92771) fasta scores: E(): 0%2C 83.1%25 id in 172 aa. Previously sequenced as TR:Q49672 (EMBL:U00012). Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0733;product=putative membrane protein;protein_id=CAC30242.1;transl_table=11
AL450380.1	EMBL	gene	875150	875836	.	-	.	ID=gene-ML0734;Name=ML0734;gbkey=Gene;gene=ML0734;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	875150	875836	.	-	0	ID=cds-CAC30243.1;Parent=gene-ML0734;Dbxref=GOA:Q7AQF6,InterPro:IPR007267,UniProtKB/TrEMBL:Q7AQF6,NCBI_GP:CAC30243.1;Name=CAC30243.1;Note=Similar to Mycobacterium tuberculosis hypothetical 30.1 kDa protein RV3277 OR MTCY71.17 TR:P96882 (EMBL:Z92771) fasta scores: E(): 0%2C 84.6%25 id in 228 aa. Previously sequenced as TR:Q49673 (EMBL:U00012). Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0734;product=putative membrane protein;protein_id=CAC30243.1;transl_table=11
AL450380.1	EMBL	stem_loop	875249	875308	.	-	.	ID=id-ML0734;Note=60 bp palindrome;gbkey=stem_loop;gene=ML0734
AL450380.1	EMBL	gene	875924	877243	.	+	.	ID=gene-purK;Name=purK;gbkey=Gene;gene=purK;gene_biotype=protein_coding;gene_synonym=ML0735
AL450380.1	EMBL	CDS	875924	877243	.	+	0	ID=cds-CAC30244.1;Parent=gene-purK;Dbxref=GOA:P46701,InterPro:IPR003135,InterPro:IPR005875,InterPro:IPR011054,InterPro:IPR011761,InterPro:IPR013816,InterPro:IPR016185,NCBI_GP:CAC30244.1;Name=CAC30244.1;Note=Similar to Mycobacterium tuberculosis phosphoribosylaminoimidazole carboxylase atpase subunit purK OR RV3276C OR MTCY71.16C SW:PURK_MYCTU (P96881) fasta scores: E(): 0%2C 76.1%25 id in 444 aa%2C and to Corynebacterium ammoniagenes phosphoribosylaminoimidazole carboxylase ATPase subunit purK SW:PURK_CORAM (Q44678) fasta scores: E(): 0%2C 48.3%25 id in 404 aa. Previously sequenced as SW:PURK_MYCLE (P46701). Contains Pfam match to entry PF02222 ATP-grasp%2C ATP-grasp domain.;gbkey=CDS;gene=purK;product=phosphoribosylaminoimidazole carboxylase ATPase;protein_id=CAC30244.1;transl_table=11
AL450380.1	EMBL	sequence_feature	876047	876556	.	+	.	ID=id-purK;Note=Pfam match to entry PF02222 ATP-grasp%2C ATP-grasp domain%2C score 145.20%2C E-value 1.2e-39;gbkey=misc_feature;gene=purK
AL450380.1	EMBL	ribosome_entry_site	877230	877234	.	+	.	ID=id-purK-2;Parent=gene-purK;Note=possible RBS;gbkey=regulatory;gene=purK;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	877243	877758	.	+	.	ID=gene-purE;Name=purE;gbkey=Gene;gene=purE;gene_biotype=protein_coding;gene_synonym=ML0736
AL450380.1	EMBL	CDS	877243	877758	.	+	0	ID=cds-CAC30245.1;Parent=gene-purE;Dbxref=GOA:P46702,InterPro:IPR000031,InterPro:IPR024694,NCBI_GP:CAC30245.1;Name=CAC30245.1;Note=Similar to Mycobacterium tuberculosis phosphoribosylaminoimidazole carboxylase catalytic subunit purE or Rv3275c or MTCY71.15C SW:PUR6_MYCTU (P96880) (174 aa) fasta scores: E(): 0%2C 81.5%25 id in 168 aa and to Corynebacterium ammoniagenes phosphoribosylaminoimidazole carboxylase catalytic subunit purE SW:PUR6_CORAM (Q44679) (177 aa) fasta scores: E(): 0%2C 66.2%25 id in 148 aa. Previously sequenced as SW:PUR6_MYCLE (P46702). Contains Pfam match to entry PF00731 AIRC%2C AIR carboxylase.;gbkey=CDS;gene=purE;product=phosphoribosylaminoimidazole carboxylase;protein_id=CAC30245.1;transl_table=11
AL450380.1	EMBL	sequence_feature	877258	877701	.	+	.	ID=id-purE;Note=Pfam match to entry PF00731 AIRC%2C AIR carboxylase%2C score 322.30%2C E-value 5.6e-93;gbkey=misc_feature;gene=purE
AL450380.1	EMBL	ribosome_entry_site	877842	877847	.	+	.	ID=id-AL450380.1:877842..877847;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	877853	879022	.	+	.	ID=gene-fadE25;Name=fadE25;gbkey=Gene;gene=fadE25;gene_biotype=protein_coding;gene_synonym=ML0737
AL450380.1	EMBL	CDS	877853	879022	.	+	0	ID=cds-CAC30246.1;Parent=gene-fadE25;Dbxref=GOA:P46703,InterPro:IPR006089,InterPro:IPR006091,InterPro:IPR009075,InterPro:IPR009100,InterPro:IPR013786,NCBI_GP:CAC30246.1;Name=CAC30246.1;Note=Similar to Mycobacterium tuberculosis RV3274C OR MTCY71.14C%2C putative acyl-CoA dehydrogenase%2C TR:P96879 (EMBL:Z92771) fasta scores: E(): 0%2C 92.0%25 id in 389 aa%2C and to Streptomyces lividans fatty acid acyl-CoA dehydrogenase fadE TR:Q9RIQ5 (EMBL:AJ250495) fasta scores: E(): 0%2C 67.6%25 id in 383 aa. Previously sequenced as SW:ACD_MYCLE (P46703). Contains Pfam match to entry PF00441 Acyl-CoA_dh%2C Acyl-CoA dehydrogenase. Contains PS00073 Acyl-CoA dehydrogenases signature 2. Contains PS00072 Acyl-CoA dehydrogenases signature 1.%3B~Similar to ML0660%2C ML0661 and shows weaker similarity to ML2563;gbkey=CDS;gene=fadE25;product=putative acyl-CoA dehydrogenase;protein_id=CAC30246.1;transl_table=11
AL450380.1	EMBL	sequence_feature	877895	879007	.	+	.	ID=id-fadE25;Note=Pfam match to entry PF00441 Acyl-CoA_dh%2C Acyl-CoA dehydrogenase%2C score 798.10%2C E-value 3.4e-236;gbkey=misc_feature;gene=fadE25
AL450380.1	EMBL	sequence_feature	878249	878287	.	+	.	ID=id-fadE25-2;Note=PS00072 Acyl-CoA dehydrogenases signature 1;gbkey=misc_feature;gene=fadE25
AL450380.1	EMBL	sequence_feature	878888	878947	.	+	.	ID=id-fadE25-3;Note=PS00073 Acyl-CoA dehydrogenases signature 2;gbkey=misc_feature;gene=fadE25
AL450380.1	EMBL	pseudogene	879312	879458	.	-	.	ID=gene-pstA2;Name=pstA2;gbkey=Gene;gene=pstA2;gene_biotype=pseudogene;gene_synonym=ML0738;pseudo=true
AL450380.1	EMBL	CDS	879312	879458	.	-	0	ID=cds-pstA2;Parent=gene-pstA2;Note=Possible pseudogene of M. tuberculosis orthologue pstA2 (Best blastx score 95);gbkey=CDS;gene=pstA2;product=PstA component of phosphate uptake (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	879534	880518	.	-	.	ID=gene-pstC;Name=pstC;gbkey=Gene;gene=pstC;gene_biotype=pseudogene;gene_synonym=ML0739;pseudo=true
AL450380.1	EMBL	CDS	879534	880518	.	-	0	ID=cds-pstC;Parent=gene-pstC;Note=Possible pseudogene of M. tuberculosis orthologue pstC (Best blastx score 346);gbkey=CDS;gene=pstC;product=PstC component of phosphate uptake (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	881071	881654	.	-	.	ID=gene-phoS1;Name=phoS1;gbkey=Gene;gene=phoS1;gene_biotype=pseudogene;gene_synonym=ML0740;pseudo=true
AL450380.1	EMBL	CDS	881071	881654	.	-	0	ID=cds-phoS1;Parent=gene-phoS1;Note=Possible pseudogene of M. tuberculosis orthologue phoS1 (Best blastx score 238);gbkey=CDS;gene=phoS1;product=PstS component of phosphate uptake (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	881783	882588	.	-	.	ID=gene-pstB;Name=pstB;gbkey=Gene;gene=pstB;gene_biotype=pseudogene;gene_synonym=ML0741;pseudo=true
AL450380.1	EMBL	CDS	881783	882588	.	-	0	ID=cds-pstB;Parent=gene-pstB;Note=Possible pseudogene of M. tuberculosis orthologue pstB (Best blastx score 307);gbkey=CDS;gene=pstB;product=ABC transport component of phosphate uptake (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	882887	883982	.	+	.	ID=gene-pstS;Name=pstS;gbkey=Gene;gene=pstS;gene_biotype=pseudogene;gene_synonym=ML0742;pseudo=true
AL450380.1	EMBL	CDS	882887	883982	.	+	0	ID=cds-pstS;Parent=gene-pstS;Note=Possible pseudogene of M. tuberculosis orthologue pstS (Best blastx score 440);gbkey=CDS;gene=pstS;product=PstS component of phosphate uptake (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	884241	885771	.	+	.	ID=gene-pknD;Name=pknD;gbkey=Gene;gene=pknD;gene_biotype=pseudogene;gene_synonym=ML0743;pseudo=true
AL450380.1	EMBL	CDS	884241	885771	.	+	0	ID=cds-pknD;Parent=gene-pknD;Note=Possible pseudogene of M. tuberculosis orthologue pknD (Best blastx score 458);gbkey=CDS;gene=pknD;product=serine-threonine protein kinase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	885848	886981	.	-	.	ID=gene-ML0744;Name=ML0744;gbkey=Gene;gene=ML0744;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	885848	886981	.	-	0	ID=cds-ML0744;Parent=gene-ML0744;Note=Possible pseudogene of M. tuberculosis orthologue Rv3272 (Best blastx score 782);gbkey=CDS;gene=ML0744;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	887113	887966	.	-	.	ID=gene-ML0745;Name=ML0745;gbkey=Gene;gene=ML0745;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	887113	887966	.	-	0	ID=cds-ML0745;Parent=gene-ML0745;Note=Possible pseudogene similar to M. tuberculosis paralogue Rv1729c (Best blastx score 318);gbkey=CDS;gene=ML0745;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	888118	888693	.	+	.	ID=gene-ML0746;Name=ML0746;gbkey=Gene;gene=ML0746;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	888118	888693	.	+	0	ID=cds-ML0746;Parent=gene-ML0746;Note=Possible pseudogene of M. tuberculosis orthologue Rv3271c (Best blastx score 151);gbkey=CDS;gene=ML0746;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	888793	890970	.	-	.	ID=gene-ctpC;Name=ctpC;gbkey=Gene;gene=ctpC;gene_biotype=protein_coding;gene_synonym=ML0747
AL450380.1	EMBL	CDS	888793	890970	.	-	0	ID=cds-CAC30256.1;Parent=gene-ctpC;Dbxref=GOA:Q9CCL1,InterPro:IPR001757,InterPro:IPR008250,InterPro:IPR018303,InterPro:IPR023214,InterPro:IPR023299,InterPro:IPR027256,NCBI_GP:CAC30256.1;Name=CAC30256.1;Note=Similar to Mycobacterium tuberculosis probable cation-transporting p-type ATPase C ctpC OR RV3270 OR MTCY71.10 SW:CTPC_MYCTU (P96875) fasta scores: E(): 0%2C 86.0%25 id in 713 aa%2C and to Mycobacterium tuberculosis metal transporting atpase mta72 mtaA TR:O66027 (EMBL:U82820) fasta scores: E(): 0%2C 79.4%25 id in 688 aa. Contains hydrophobic%2C possible membrane-spanning region. Contains 2 Pfam matches to entry PF00122 E1-E2_ATPase%2C E1-E2 ATPase. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00154 E1-E2 ATPases phosphorylation site. Contains PS01229 Hypothetical cof family signature 2.;gbkey=CDS;gene=ctpC;product=putative cation transport ATPase;protein_id=CAC30256.1;transl_table=11
AL450380.1	EMBL	sequence_feature	888823	889374	.	-	.	ID=id-ctpC;Note=Pfam match to entry PF00122 E1-E2_ATPase%2C E1-E2 ATPase%2C score 216.20%2C E-value 4.9e-61;gbkey=misc_feature;gene=ctpC
AL450380.1	EMBL	sequence_feature	889057	889125	.	-	.	ID=id-ctpC-2;Note=PS01229 Hypothetical cof family signature 2;gbkey=misc_feature;gene=ctpC
AL450380.1	EMBL	sequence_feature	889552	890406	.	-	.	ID=id-ctpC-3;Note=Pfam match to entry PF00122 E1-E2_ATPase%2C E1-E2 ATPase%2C score 246.10%2C E-value 4.7e-70;gbkey=misc_feature;gene=ctpC
AL450380.1	EMBL	sequence_feature	889705	889725	.	-	.	ID=id-ctpC-4;Note=PS00154 E1-E2 ATPases phosphorylation site;gbkey=misc_feature;gene=ctpC
AL450380.1	EMBL	sequence_feature	890476	890499	.	-	.	ID=id-ctpC-5;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ctpC
AL450380.1	EMBL	gene	890981	891259	.	-	.	ID=gene-ML0748;Name=ML0748;gbkey=Gene;gene=ML0748;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	890981	891259	.	-	0	ID=cds-CAC30257.1;Parent=gene-ML0748;Dbxref=InterPro:IPR009963,UniProtKB/TrEMBL:Q9CCL0,NCBI_GP:CAC30257.1;Name=CAC30257.1;Note=Similar to Mycobacterium tuberculosis hypothetical 9.8 kDa protein irpA OR RV3269 OR MTCY71.09 TR:P96874 (EMBL:Z92771) fasta scores: E(): 5.5e-23%2C 73.6%25 id in 91 aa%2C to Mycobacterium tuberculosis hypothetical 9.4 kDa protein RV1993C OR MTCY39.26 SW:YJ93_MYCTU (Q10865) fasta scores: E(): 6.3e-14%2C 60.8%25 id in 79 aa and to Mycobacterium tuberculosis hypothetical 10.3 kDa protein RV0968 OR MTCY10D7.06C SW:Y968_MYCTU (P71542) fasta scores: E(): 4.4e-11%2C 52.1%25 id in 96 aa.;gbkey=CDS;gene=ML0748;product=conserved hypothetical protein;protein_id=CAC30257.1;transl_table=11
AL450380.1	EMBL	pseudogene	891408	892024	.	-	.	ID=gene-ML0749;Name=ML0749;gbkey=Gene;gene=ML0749;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	891408	892024	.	-	0	ID=cds-ML0749;Parent=gene-ML0749;Note=Possible pseudogene of M. tuberculosis orthologue Rv3268 (Best blastx score 385);gbkey=CDS;gene=ML0749;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	892063	893532	.	-	.	ID=gene-ML0750;Name=ML0750;gbkey=Gene;gene=ML0750;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	892063	893532	.	-	0	ID=cds-CAC30259.1;Parent=gene-ML0750;Dbxref=InterPro:IPR004474,InterPro:IPR027381,UniProtKB/TrEMBL:Q9CCK9,NCBI_GP:CAC30259.1;Name=CAC30259.1;Note=Similar to Mycobacterium tuberculosis hypothetical 51.3 kDa protein RV3267 OR MTCY71.07 TR:P96872 (EMBL:Z92771) fasta scores: E(): 0%2C 78.9%25 id in 498 aa%2C and to Mycobacterium tuberculosis cpsA OR RV3484 OR MTCY13E12.37 TR:O06347 (EMBL:Z95390) fasta scores: E(): 0%2C 34.5%25 id in 502 aa. Also similar to hypothetical proteins from capsular polysaccharide biosynthesis loci (homologues of Streptococcus agalactiae cpsX%2C which may have a regulatory function) and to frnA from a Streptomyces roseofulvus polyketide biosynthesis locus.%3B~Similar to ML2247;gbkey=CDS;gene=ML0750;product=conserved hypothetical protein;protein_id=CAC30259.1;transl_table=11
AL450380.1	EMBL	gene	893621	894556	.	+	.	ID=gene-rmlD;Name=rmlD;gbkey=Gene;gene=rmlD;gene_biotype=protein_coding;gene_synonym=ML0751
AL450380.1	EMBL	CDS	893621	894556	.	+	0	ID=cds-CAC30260.1;Parent=gene-rmlD;Dbxref=GOA:Q9CCK8,InterPro:IPR005913,InterPro:IPR016040,UniProtKB/TrEMBL:Q9CCK8,NCBI_GP:CAC30260.1;Name=CAC30260.1;Note=Similar to Mycobacterium tuberculosis rfbD OR RV3266C OR MTCY71.06C TR:P96871 (EMBL:Z92771) fasta scores: E(): 0%2C 74.4%25 id in 312 aa%2C to Saccharopolyspora erythraea thymidine diphospho-4-keto-6-deoxyglucose 3%2C 5-epimerase kde TR:Q54117 (EMBL:L37354) fasta scores: E(): 0%2C 49.2%25 id in 301 aa and to Streptomyces griseus dTDP-4-dehydrorhamnose reductase strL SW:STRL_STRGR (P29781) fasta scores: E(): 1.6e-32%2C 44.4%25 id in 311 aa.;gbkey=CDS;gene=rmlD;product=putative dTDP-rhamnose modification protein;protein_id=CAC30260.1;transl_table=11
AL450380.1	EMBL	gene	894549	895475	.	+	.	ID=gene-wbbL;Name=wbbL;gbkey=Gene;gene=wbbL;gene_biotype=protein_coding;gene_synonym=ML0752
AL450380.1	EMBL	CDS	894549	895475	.	+	0	ID=cds-CAC30261.1;Parent=gene-wbbL;Dbxref=GOA:Q9CCK7,InterPro:IPR029044,UniProtKB/TrEMBL:Q9CCK7,NCBI_GP:CAC30261.1;Name=CAC30261.1;Note=Similar to Mycobacterium tuberculosis putative dTDP-rhamnosyl transferase RV3265C OR MTCY71.05C TR:P96870 (EMBL:Z92771) fasta scores: E(): 0%2C 84.7%25 id in 301 aa%2C and to Mycobacterium smegmatis dTDP-rha:A-D-GlcNAc-diphosphoryl polyprenol%2C A-3-L-rhamnosyl transferase wbbL TR:Q9RN50 (EMBL:AF187550) fasta scores: E(): 0%2C 69.9%25 id in 296 aa. Contains Pfam match to entry PF00535 Glycos_transf_2%2C Glycosyl transferases.;gbkey=CDS;gene=wbbL;product=putative dTDP-rhamnosyl transferase;protein_id=CAC30261.1;transl_table=11
AL450380.1	EMBL	sequence_feature	894564	895076	.	+	.	ID=id-wbbL;Note=Pfam match to entry PF00535 Glycos_transf_2%2C Glycosyl transferases%2C score 21.90%2C E-value 0.0029;gbkey=misc_feature;gene=wbbL
AL450380.1	EMBL	gene	895477	896553	.	+	.	ID=gene-rmlA2;Name=rmlA2;gbkey=Gene;gene=rmlA2;gene_biotype=protein_coding;gene_synonym=ML0753
AL450380.1	EMBL	CDS	895477	896553	.	+	0	ID=cds-CAC30262.1;Parent=gene-rmlA2;Dbxref=GOA:Q9CCK6,InterPro:IPR001451,InterPro:IPR005835,InterPro:IPR029044,UniProtKB/TrEMBL:Q9CCK6,NCBI_GP:CAC30262.1;Name=CAC30262.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV3264C OR MTCY71.04C TR:P96869 (EMBL:Z92771) fasta scores: E(): 0%2C 86.9%25 id in 359 aa. Similar to Saccharomyces cerevisiae mpg1%2C mannose-1-phosphate guanyltransferase SW:MPG1_YEAST (P41940) blastp score: 141.5 bits%2C 29%25 identity in 349 aa. Contains Pfam match to entry PF00483 NTP_transferase%2C Nucleotidyl transferase. Contains 3 Pfam matches to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats).%3B~ML2503;gbkey=CDS;gene=rmlA2;product=putative sugar-phosphate nucleotidyl transferase;protein_id=CAC30262.1;transl_table=11
AL450380.1	EMBL	sequence_feature	895495	896190	.	+	.	ID=id-rmlA2;Note=Pfam match to entry PF00483 NTP_transferase%2C Nucleotidyl transferase%2C score 227.00%2C E-value 2.7e-64;gbkey=misc_feature;gene=rmlA2
AL450380.1	EMBL	sequence_feature	896281	896334	.	+	.	ID=id-rmlA2-2;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 16.60%2C E-value 0.59;gbkey=misc_feature;gene=rmlA2
AL450380.1	EMBL	sequence_feature	896383	896436	.	+	.	ID=id-rmlA2-3;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 5.90%2C E-value 1.2e+02;gbkey=misc_feature;gene=rmlA2
AL450380.1	EMBL	sequence_feature	896470	896523	.	+	.	ID=id-rmlA2-4;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 5.10%2C E-value 1.6e+02;gbkey=misc_feature;gene=rmlA2
AL450380.1	EMBL	pseudogene	896665	897426	.	+	.	ID=gene-ML0754;Name=ML0754;gbkey=Gene;gene=ML0754;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	896665	897426	.	+	0	ID=cds-ML0754;Parent=gene-ML0754;Note=Possible pseudogene similar to M. tuberculosis paralogue Rv3714c (Best blastx score 231);gbkey=CDS;gene=ML0754;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	897493	897753	.	-	.	ID=gene-ML0755;Name=ML0755;gbkey=Gene;gene=ML0755;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	897493	897753	.	-	0	ID=cds-CAC30264.1;Parent=gene-ML0755;Dbxref=GOA:Q9CCK5,InterPro:IPR015797,UniProtKB/TrEMBL:Q9CCK5,NCBI_GP:CAC30264.1;Name=CAC30264.1;Note=Unknown function.;gbkey=CDS;gene=ML0755;product=hypothetical protein;protein_id=CAC30264.1;transl_table=11
AL450380.1	EMBL	gene	897971	899638	.	-	.	ID=gene-ML0756;Name=ML0756;gbkey=Gene;gene=ML0756;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	897971	899638	.	-	0	ID=cds-CAC30265.1;Parent=gene-ML0756;Dbxref=GOA:Q9CCK4,InterPro:IPR002052,InterPro:IPR002296,InterPro:IPR029063,UniProtKB/TrEMBL:Q9CCK4,NCBI_GP:CAC30265.1;Name=CAC30265.1;Note=Similar to Mycobacterium tuberculosis putative DNA methylase RV3263 OR MTCY71.03 TR:P96868 (EMBL:Z92771) fasta scores: E(): 0%2C 81.9%25 id in 541 aa and to Escherichia coli modification methylase eco57IM SW:MT57_ECOLI (P25240) fasta scores: E(): 0%2C 31.4%25 id in 525 aa. Contains PS00092 N-6 Adenine-specific DNA methylases signature.;gbkey=CDS;gene=ML0756;product=probable DNA methylase;protein_id=CAC30265.1;transl_table=11
AL450380.1	EMBL	sequence_feature	899279	899299	.	-	.	ID=id-ML0756;Note=PS00092 N-6 Adenine-specific DNA methylases signature;gbkey=misc_feature;gene=ML0756
AL450380.1	EMBL	gene	899660	900352	.	-	.	ID=gene-ML0757;Name=ML0757;gbkey=Gene;gene=ML0757;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	899660	900352	.	-	0	ID=cds-CAC30266.1;Parent=gene-ML0757;Dbxref=UniProtKB/TrEMBL:Q9CCK3,NCBI_GP:CAC30266.1;Name=CAC30266.1;Note=Unknown function.;gbkey=CDS;gene=ML0757;product=hypothetical protein;protein_id=CAC30266.1;transl_table=11
AL450380.1	EMBL	gene	900393	901766	.	-	.	ID=gene-ML0758;Name=ML0758;gbkey=Gene;gene=ML0758;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	900393	901766	.	-	0	ID=cds-CAC30267.1;Parent=gene-ML0758;Dbxref=GOA:Q9CCK2,InterPro:IPR000415,InterPro:IPR002847,InterPro:IPR008225,InterPro:IPR019943,InterPro:IPR023661,InterPro:IPR029479,NCBI_GP:CAC30267.1;Name=CAC30267.1;Note=Similar to Mycobacterium tuberculosis conserved hypothetical protein RV3262 OR MTCY71.02 TR:P96867 (EMBL:Z92771) fasta scores: E(): 0%2C 82.2%25 id in 445 aa%2C and to Streptomyces coelicolor putative oxidoreductase SCE34.18 TR:CAB88921 (EMBL:AL353862) fasta scores: E(): 0%2C 50.8%25 id in 455 aa. Contains Pfam match to entry PF00881 Nitroreductase%2C Nitroreductase family. Contains Pfam match to entry PF01996 DUF129%2C Protein of unknown function.;gbkey=CDS;gene=ML0758;product=putative oxidoreductase;protein_id=CAC30267.1;transl_table=11
AL450380.1	EMBL	sequence_feature	900501	900986	.	-	.	ID=id-ML0758;Note=Pfam match to entry PF00881 Nitroreductase%2C Nitroreductase family%2C score 23.70%2C E-value 6.3e-05;gbkey=misc_feature;gene=ML0758
AL450380.1	EMBL	sequence_feature	901011	901706	.	-	.	ID=id-ML0758-2;Note=Pfam match to entry PF01996 DUF129%2C Protein of unknown function%2C score 329.50%2C E-value 3.9e-95;gbkey=misc_feature;gene=ML0758
AL450380.1	EMBL	gene	901763	902902	.	-	.	ID=gene-ML0759;Name=ML0759;gbkey=Gene;gene=ML0759;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	901763	902902	.	-	0	ID=cds-CAC30268.1;Parent=gene-ML0759;Dbxref=GOA:Q9CCK1,InterPro:IPR002882,InterPro:IPR010115,NCBI_GP:CAC30268.1;Name=CAC30268.1;Note=Similar to Mycobacterium tuberculosis hypothetical 35.3 kDa protein RV3261 OR MTCY71.01 TR:P96866 (EMBL:Z92771) fasta scores: E(): 0%2C 79.0%25 id in 333 aa and to Streptomyces coelicolor hypothetical 33.6 kDa protein SCE34.17 TR:CAB88920 (EMBL:AL353862) fasta scores: E(): 0%2C 52.7%25 id in 334 aa. Contains Pfam match to entry PF01933 UPF0052%2C Uncharacterised protein family.;gbkey=CDS;gene=ML0759;product=conserved hypothetical protein;protein_id=CAC30268.1;transl_table=11
AL450380.1	EMBL	sequence_feature	901769	902758	.	-	.	ID=id-ML0759;Note=Pfam match to entry PF01933 UPF0052%2C Uncharacterised protein family%2C score 638.90%2C E-value 2.8e-188;gbkey=misc_feature;gene=ML0759
AL450380.1	EMBL	gene	903227	903496	.	+	.	ID=gene-whiB2;Name=whiB2;gbkey=Gene;gene=whiB2;gene_biotype=protein_coding;gene_synonym=ML0760
AL450380.1	EMBL	CDS	903227	903496	.	+	0	ID=cds-CAC30269.1;Parent=gene-whiB2;Dbxref=GOA:Q9CCK0,InterPro:IPR003482,UniProtKB/TrEMBL:Q9CCK0,NCBI_GP:CAC30269.1;Name=CAC30269.1;Note=Similar to Mycobacterium tuberculosis regulatory protein whiB2 OR RV3260C OR MTV015.05C TR:O53353 (EMBL:AL021840) fasta scores: E(): 0%2C 85.4%25 id in 89 aa%2C to Mycobacterium smegmatis whmD TR:Q9S426 (EMBL:AF164439) fasta scores: E(): 1.6e-29%2C 84.1%25 id in 82 aa and to Streptomyces coelicolor regulatory protein WHIB TR:Q53963 (EMBL:X62287) fasta scores: E(): 4.8e-26%2C 85.5%25 id in 69 aa.%3B~Similar to ML0382%2C ML0639%2C ML0804 and ML2307;gbkey=CDS;gene=whiB2;product=putative transcriptional regulator;protein_id=CAC30269.1;transl_table=11
AL450380.1	EMBL	gene	903525	904028	.	-	.	ID=gene-ML0761;Name=ML0761;gbkey=Gene;gene=ML0761;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	903525	904028	.	-	0	ID=cds-CAC30270.1;Parent=gene-ML0761;Dbxref=InterPro:IPR010428,UniProtKB/TrEMBL:Q9CCJ9,NCBI_GP:CAC30270.1;Name=CAC30270.1;Note=Similar to Mycobacterium tuberculosis hypothetical 15.6 kDa protein RV3259 OR MTV015.04 TR:O53352 (EMBL:AL021840) fasta scores: E(): 0%2C 89.2%25 id in 139 aa and to Mycobacterium smegmatis hypothetical 6.0 kDa protein (partial CDS) TR:Q9S425 (EMBL:AF164439) fasta scores: E(): 1e-10%2C 75.5%25 id in 53 aa.;gbkey=CDS;gene=ML0761;product=conserved hypothetical protein;protein_id=CAC30270.1;transl_table=11
AL450380.1	EMBL	gene	904068	904565	.	+	.	ID=gene-ML0762;Name=ML0762;gbkey=Gene;gene=ML0762;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	904068	904565	.	+	0	ID=cds-CAC30271.1;Parent=gene-ML0762;Dbxref=InterPro:IPR021888,UniProtKB/TrEMBL:Q9CCJ8,NCBI_GP:CAC30271.1;Name=CAC30271.1;Note=Similar to Mycobacterium tuberculosis hypothetical 16.8 kDa protein RV3258C OR MTV015.03C TR:O53351 (EMBL:AL021840) fasta scores: E(): 0%2C 76.9%25 id in 169 aa%2C and to Streptomyces coelicolor hypothetical 15.0 kDa protein SCE34.11C TR:CAB88914 (EMBL:AL353862) fasta scores: E(): 4.8e-16%2C 47.0%25 id in 151 aa.;gbkey=CDS;gene=ML0762;product=conserved hypothetical protein;protein_id=CAC30271.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	904664	904669	.	+	.	ID=id-AL450380.1:904664..904669;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	904675	906081	.	+	.	ID=gene-pmmA;Name=pmmA;gbkey=Gene;gene=pmmA;gene_biotype=protein_coding;gene_synonym=ML0763
AL450380.1	EMBL	CDS	904675	906081	.	+	0	ID=cds-CAC30272.1;Parent=gene-pmmA;Dbxref=GOA:Q9CCJ7,InterPro:IPR005841,InterPro:IPR005843,InterPro:IPR005844,InterPro:IPR005845,InterPro:IPR005846,InterPro:IPR016055,UniProtKB/TrEMBL:Q9CCJ7,NCBI_GP:CAC30272.1;Name=CAC30272.1;Note=Similar to Mycobacterium tuberculosis pmmA%2C RV3257C%2C putative phosphomannomutase%2C TR:O86374 (EMBL:Z95121) fasta scores: E(): 0%2C 83.1%25 id in 468 aa and to Escherichia coli phosphomannomutase manB SW:MANB_ECOLI (P24175) fasta scores: E(): 0%2C 39.0%25 id in 451 aa. Contains Pfam match to entry PF00408 PGM_PMM%2C Phosphoglucomutase/phosphomannomutase.%3B~Similar to ML0366 and ML0706;gbkey=CDS;gene=pmmA;product=putative phosphomannomutase;protein_id=CAC30272.1;transl_table=11
AL450380.1	EMBL	sequence_feature	904696	906015	.	+	.	ID=id-pmmA;Note=Pfam match to entry PF00408 PGM_PMM%2C Phosphoglucomutase/phosphomannomutase%2C score 385.40%2C E-value 5.5e-112;gbkey=misc_feature;gene=pmmA
AL450380.1	EMBL	ribosome_entry_site	906066	906070	.	+	.	ID=id-pmmA-2;Parent=gene-pmmA;Note=possible RBS;gbkey=regulatory;gene=pmmA;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	906078	907175	.	+	.	ID=gene-ML0764;Name=ML0764;gbkey=Gene;gene=ML0764;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	906078	907175	.	+	0	ID=cds-CAC30273.1;Parent=gene-ML0764;Dbxref=UniProtKB/TrEMBL:Q9CCJ6,NCBI_GP:CAC30273.1;Name=CAC30273.1;Note=Similar to Mycobacterium tuberculosis hypothetical 35.3 kDa protein RV3256C OR MTV015.01C-MTCY20B11.31C TR:O05899 (EMBL:Z95121) fasta scores: E(): 0%2C 75.3%25 id in 365 aa.;gbkey=CDS;gene=ML0764;product=conserved hypothetical protein;protein_id=CAC30273.1;transl_table=11
AL450380.1	EMBL	gene	907183	908415	.	+	.	ID=gene-manA;Name=manA;gbkey=Gene;gene=manA;gene_biotype=protein_coding;gene_synonym=ML0765
AL450380.1	EMBL	CDS	907183	908415	.	+	0	ID=cds-CAC30274.1;Parent=gene-manA;Dbxref=GOA:Q9CCJ5,InterPro:IPR001250,InterPro:IPR011051,InterPro:IPR014710,InterPro:IPR016305,UniProtKB/TrEMBL:Q9CCJ5,NCBI_GP:CAC30274.1;Name=CAC30274.1;Note=Similar to Mycobacterium tuberculosis manA OR RV3255C OR MTCY20B11.30C%2C putative mannose-6-phosphate isomerase%2C TR:O05898 (EMBL:Z95121) fasta scores: E(): 0%2C 84.4%25 id in 411 aa and to Homo sapiens mannose-6-phosphate isomerase mpi SW:MANA_HUMAN (P34949) fasta scores: E(): 1.2e-27%2C 31.0%25 id in 432 aa. Contains Pfam match to entry PF01238 PMI_typeI%2C Phosphomannose isomerase type I.;gbkey=CDS;gene=manA;product=putative mannose-6-phosphate isomerase;protein_id=CAC30274.1;transl_table=11
AL450380.1	EMBL	sequence_feature	907189	908304	.	+	.	ID=id-manA;Note=Pfam match to entry PF01238 PMI_typeI%2C Phosphomannose isomerase type I%2C score 209.40%2C E-value 5.5e-59;gbkey=misc_feature;gene=manA
AL450380.1	EMBL	pseudogene	908396	909753	.	-	.	ID=gene-ML0766;Name=ML0766;gbkey=Gene;gene=ML0766;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	908396	909753	.	-	0	ID=cds-ML0766;Parent=gene-ML0766;Note=Possible pseudogene of M. tuberculosis orthologue Rv3254 (Best blastx score 402);gbkey=CDS;gene=ML0766;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	909846	911322	.	+	.	ID=gene-ML0767;Name=ML0767;gbkey=Gene;gene=ML0767;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	909846	911322	.	+	0	ID=cds-ML0767;Parent=gene-ML0767;Note=Possible pseudogene of M. tuberculosis orthologue Rv3253c (Best blastx score 1109);gbkey=CDS;gene=ML0767;product=probable cationic amino acid transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	911577	912770	.	+	.	ID=gene-ML0768;Name=ML0768;gbkey=Gene;gene=ML0768;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	911577	912770	.	+	0	ID=cds-ML0768;Parent=gene-ML0768;Note=Possible pseudogene of M. tuberculosis orthologue Rv3252c (Best blastx score 358);gbkey=CDS;gene=ML0768;product=possible alkane-1 monooxygenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	912779	912895	.	+	.	ID=gene-ML0769;Name=ML0769;gbkey=Gene;gene=ML0769;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	912779	912895	.	+	0	ID=cds-ML0769;Parent=gene-ML0769;Note=Possible pseudogene of M. tuberculosis orthologue Rv3251c (Best blastx score 105);gbkey=CDS;gene=ML0769;product=possible rubredoxin (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	912998	913508	.	+	.	ID=gene-ML0770;Name=ML0770;gbkey=Gene;gene=ML0770;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	912998	913508	.	+	0	ID=cds-ML0770;Parent=gene-ML0770;Note=Possible pseudogene of M. tuberculosis orthologue Rv3249c (Best blastx score 273);gbkey=CDS;gene=ML0770;product=transcriptional regulator (TetR/AcrR family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	913613	913616	.	+	.	ID=id-AL450380.1:913613..913616;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	913623	915101	.	+	.	ID=gene-sahH;Name=sahH;gbkey=Gene;gene=sahH;gene_biotype=protein_coding;gene_synonym=ML0771
AL450380.1	EMBL	CDS	913623	915101	.	+	0	ID=cds-CAC30280.1;Parent=gene-sahH;Dbxref=GOA:Q9CCJ4,InterPro:IPR000043,InterPro:IPR015878,InterPro:IPR016040,InterPro:IPR020082,NCBI_GP:CAC30280.1;Name=CAC30280.1;Note=Similar to Mycobacterium tuberculosis adenosylhomocysteinase achY OR sahH OR RV3248C OR MTCY20B11.23C SW:SAHH_MYCTU (O08364) fasta scores: E(): 0%2C 91.4%25 id in 489 aa%2C and to Mycobacterium bovis S-adenosyl-L-homocysteine hydrolase TR:AAF72670 (EMBL:AF262755) fasta scores: E(): 0%2C 91.4%25 id in 489 aa%2C and to Trichomonas vaginalis adenosylhomocysteinase SW:SAHH_TRIVA (P51540) fasta scores: E(): 0%2C 62.3%25 id in 478 aa. Contains Pfam match to entry PF00670 AdoHcyase%2C S-adenosyl-L-homocysteine hydrolase. Contains PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. Contains PS00738 S-adenosyl-L-homocysteine hydrolase signature 1.;gbkey=CDS;gene=sahH;product=putative S-adenosyl-L-homocysteine hydrolase;protein_id=CAC30280.1;transl_table=11
AL450380.1	EMBL	sequence_feature	913677	914927	.	+	.	ID=id-sahH;Note=Pfam match to entry PF00670 AdoHcyase%2C S-adenosyl-L-homocysteine hydrolase%2C score 943.80%2C E-value 4.6e-280;gbkey=misc_feature;gene=sahH
AL450380.1	EMBL	sequence_feature	913887	913931	.	+	.	ID=id-sahH-2;Note=PS00738 S-adenosyl-L-homocysteine hydrolase signature 1;gbkey=misc_feature;gene=sahH
AL450380.1	EMBL	sequence_feature	914436	914486	.	+	.	ID=id-sahH-3;Note=PS00739 S-adenosyl-L-homocysteine hydrolase signature 2;gbkey=misc_feature;gene=sahH
AL450380.1	EMBL	gene	915144	915776	.	+	.	ID=gene-tmk;Name=tmk;gbkey=Gene;gene=tmk;gene_biotype=protein_coding;gene_synonym=ML0772
AL450380.1	EMBL	CDS	915144	915776	.	+	0	ID=cds-CAC30281.1;Parent=gene-tmk;Dbxref=GOA:Q9CCJ3,InterPro:IPR018094,InterPro:IPR018095,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CCJ3,NCBI_GP:CAC30281.1;Name=CAC30281.1;Note=Similar to Mycobacterium tuberculosis putative thymidylate kinase MTCY20B11 OR RV3247C OR MTCY20B11.22C TR:O05891 (EMBL:Z95121) fasta scores: E(): 0%2C 77.3%25 id in 207 aa%2C and to Homo sapiens thymidylate kinase tymK OR tmpK SW:KTHY_HUMAN (P23919) fasta scores: E(): 0.005%2C 29.1%25 id in 196 aa. Contains Pfam match to entry PF02223 Thymidylate_kin%2C Thymidylate kinase. Contains PS01331 Thymidylate kinase signature. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=tmk;product=putative thymidylate kinase;protein_id=CAC30281.1;transl_table=11
AL450380.1	EMBL	sequence_feature	915156	915764	.	+	.	ID=id-tmk;Note=Pfam match to entry PF02223 Thymidylate_kin%2C Thymidylate kinase%2C score 160.70%2C E-value 2.5e-44;gbkey=misc_feature;gene=tmk
AL450380.1	EMBL	sequence_feature	915210	915233	.	+	.	ID=id-tmk-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=tmk
AL450380.1	EMBL	sequence_feature	915417	915455	.	+	.	ID=id-tmk-3;Note=PS01331 Thymidylate kinase signature;gbkey=misc_feature;gene=tmk
AL450380.1	EMBL	sequence_feature	915741	915773	.	+	.	ID=id-tmk-4;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=tmk
AL450380.1	EMBL	gene	915869	916555	.	+	.	ID=gene-mtrA;Name=mtrA;gbkey=Gene;gene=mtrA;gene_biotype=protein_coding;gene_synonym=ML0773
AL450380.1	EMBL	CDS	915869	916555	.	+	0	ID=cds-CAC30282.1;Parent=gene-mtrA;Dbxref=GOA:Q9CCJ2,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,NCBI_GP:CAC30282.1;Name=CAC30282.1;Note=Similar to Mycobacterium tuberculosis mtra protein mtrA OR RV3246C OR MTCY20B11.21C TR:Q50447 (EMBL:Z95121) fasta scores: E(): 0%2C 98.7%25 id in 228 aa%2C to Mycobacterium bovis sensory transduction protein regX3 SW:RGX3_MYCBO (O07130) fasta scores: E(): 0%2C 50.2%25 id in 221 aa%2C and to Streptomyces coelicolor transcriptional regulatory protein afsQ1 SW:AFQ1_STRCO (Q04942) fasta scores: E(): 0%2C 47.1%25 id in 221 aa. Contains Pfam match to entry PF00486 trans_reg_C%2C Transcriptional regulatory protein%2C C terminal. Contains Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain.%3B~Similar to ML0174%2C ML1286%2C ML2123 and ML2439;gbkey=CDS;gene=mtrA;product=putative two-component response regulator;protein_id=CAC30282.1;transl_table=11
AL450380.1	EMBL	sequence_feature	915884	916216	.	+	.	ID=id-mtrA;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 129.60%2C E-value 5.8e-35;gbkey=misc_feature;gene=mtrA
AL450380.1	EMBL	sequence_feature	916316	916534	.	+	.	ID=id-mtrA-2;Note=Pfam match to entry PF00486 trans_reg_C%2C Transcriptional regulatory protein%2C C terminal%2C score 111.50%2C E-value 4.7e-32;gbkey=misc_feature;gene=mtrA
AL450380.1	EMBL	gene	916683	918371	.	+	.	ID=gene-mtrB;Name=mtrB;gbkey=Gene;gene=mtrB;gene_biotype=protein_coding;gene_synonym=ML0774
AL450380.1	EMBL	CDS	916683	918371	.	+	0	ID=cds-CAC30283.1;Parent=gene-mtrB;Dbxref=GOA:Q9CCJ1,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,NCBI_GP:CAC30283.1;Name=CAC30283.1;Note=Similar to Mycobacterium tuberculosis mtrB%2C probable sensor histidine kinase%2C TR:Q50496 (EMBL:U14909) fasta scores: E(): 0%2C 88.3%25 id in 566 aa. Contains hydrophobic%2C possible membrane-spanning region. Contains Pfam match to entry PF00672 DUF5%2C Domain found in bacterial signal proteins. Contains Pfam match to entry PF00512 signal%2C Histidine kinase.%3B~Similar to ML0175%2C ML2124 and ML2440;gbkey=CDS;gene=mtrB;product=putative two-component system sensor kinase;protein_id=CAC30283.1;transl_table=11
AL450380.1	EMBL	sequence_feature	917325	917534	.	+	.	ID=id-mtrB;Note=Pfam match to entry PF00672 DUF5%2C Domain found in bacterial signal proteins%2C score 69.10%2C E-value 9.1e-17;gbkey=misc_feature;gene=mtrB
AL450380.1	EMBL	sequence_feature	917595	918230	.	+	.	ID=id-mtrB-2;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 189.50%2C E-value 5.2e-53;gbkey=misc_feature;gene=mtrB
AL450380.1	EMBL	ribosome_entry_site	918360	918364	.	+	.	ID=id-mtrB-3;Parent=gene-mtrB;Note=possible RBS;gbkey=regulatory;gene=mtrB;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	918368	920137	.	+	.	ID=gene-lpqB;Name=lpqB;gbkey=Gene;gene=lpqB;gene_biotype=protein_coding;gene_synonym=ML0775
AL450380.1	EMBL	CDS	918368	920137	.	+	0	ID=cds-CAC30284.1;Parent=gene-lpqB;Dbxref=GOA:Q9CCJ0,InterPro:IPR018910,InterPro:IPR019606,InterPro:IPR023959,NCBI_GP:CAC30284.1;Name=CAC30284.1;Note=Similar to Mycobacterium tuberculosis putative lipoprotein RV3244C OR MTCY20B11.19C TR:O05889 (EMBL:Z95121) fasta scores: E(): 0%2C 87.9%25 id in 579 aa%2C and to Streptomyces coelicolor putative lipoprotein SCE33.13C TR:CAB90922 (EMBL:AL355774) fasta scores: E(): 0.00039%2C 24.4%25 id in 624 aa. Contains a probable N-terminal signal sequence. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=lpqB;product=putative lipoprotein;protein_id=CAC30284.1;transl_table=11
AL450380.1	EMBL	sequence_feature	918398	918430	.	+	.	ID=id-lpqB;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=lpqB
AL450380.1	EMBL	gene	920258	920515	.	+	.	ID=gene-ML0776;Name=ML0776;gbkey=Gene;gene=ML0776;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	920258	920515	.	+	0	ID=cds-CAC30285.1;Parent=gene-ML0776;Dbxref=UniProtKB/TrEMBL:Q9CCI9,NCBI_GP:CAC30285.1;Name=CAC30285.1;Note=Similar to the N-terminal half of Mycobacterium tuberculosis hypothetical 22.5 kDa protein RV3242C OR MTCY20B11.17C TR:O05887 (EMBL:Z95121) fasta scores: E(): 6.8e-18%2C 78.1%25 id in 64 aa.;gbkey=CDS;gene=ML0776;product=CAC30285.1;protein_id=CAC30285.1;transl_table=11
AL450380.1	EMBL	gene	920655	920849	.	+	.	ID=gene-ML0777;Name=ML0777;gbkey=Gene;gene=ML0777;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	920655	920849	.	+	0	ID=cds-CAC30286.1;Parent=gene-ML0777;Dbxref=UniProtKB/TrEMBL:Q9CCI8,NCBI_GP:CAC30286.1;Name=CAC30286.1;Note=Unknown function.;gbkey=CDS;gene=ML0777;product=hypothetical protein;protein_id=CAC30286.1;transl_table=11
AL450380.1	EMBL	gene	920953	921642	.	+	.	ID=gene-ML0778;Name=ML0778;gbkey=Gene;gene=ML0778;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	920953	921642	.	+	0	ID=cds-CAC30287.1;Parent=gene-ML0778;Dbxref=GOA:Q9CCI7,InterPro:IPR003489,UniProtKB/TrEMBL:Q9CCI7,NCBI_GP:CAC30287.1;Name=CAC30287.1;Note=Similar to Mycobacterium tuberculosis hypothetical 24.5 kDa protein RV3241C OR MTCY20B11.16C TR:O05886 (EMBL:Z95121) fasta scores: E(): 0%2C 89.3%25 id in 206 aa and to Spinacia oleracea 30s ribosomal protein S30%2C chloroplast precursor RPS30 OR RPS22 SW:RR30_SPIOL (P19954) fasta scores: E(): 1.3e-10%2C 26.8%25 id in 213 aa.;gbkey=CDS;gene=ML0778;product=conserved hypothetical protein;protein_id=CAC30287.1;transl_table=11
AL450380.1	EMBL	gene	921722	924544	.	+	.	ID=gene-secA;Name=secA;gbkey=Gene;gene=secA;gene_biotype=protein_coding;gene_synonym=ML0779
AL450380.1	EMBL	CDS	921722	924544	.	+	0	ID=cds-CAC30288.1;Parent=gene-secA;Dbxref=GOA:P57996,InterPro:IPR000185,InterPro:IPR011115,InterPro:IPR011116,InterPro:IPR011130,InterPro:IPR014018,InterPro:IPR020937,InterPro:IPR027417,NCBI_GP:CAC30288.1;Name=CAC30288.1;Note=Similar to Mycobacterium tuberculosis preprotein translocase secA 1 subunit OR SECA OR RV3240C OR MTCY20B11.15C SW:SEA1_MYCTU (O05885) fasta scores: E(): 0%2C 87.5%25 id in 949 aa and to Mycobacterium bovis preprotein translocase secA subunit SECA SW:SECA_MYCBO (P71494) fasta scores: E(): 0%2C 85.9%25 id in 949 aa. Contains Pfam match to entry PF01043 SecA_protein%2C SecA protein%2C amino terminal region. Contains PS01312 Protein secA signatures.%3B~Similar to ML2082;gbkey=CDS;gene=secA;product=putative preprotein translocase subunit;protein_id=CAC30288.1;transl_table=11
AL450380.1	EMBL	sequence_feature	921725	922978	.	+	.	ID=id-secA;Note=Pfam match to entry PF01043 SecA_protein%2C SecA protein%2C amino terminal region%2C score 1050.40%2C E-value 0;gbkey=misc_feature;gene=secA
AL450380.1	EMBL	sequence_feature	923162	923209	.	+	.	ID=id-secA-2;Note=PS01312 Protein secA signatures;gbkey=misc_feature;gene=secA
AL450380.1	EMBL	pseudogene	924814	925329	.	+	.	ID=gene-ML0780;Name=ML0780;gbkey=Gene;gene=ML0780;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	924814	925329	.	+	0	ID=cds-ML0780;Parent=gene-ML0780;Note=Possible pseudogene of M. tuberculosis orthologue Rv3238c (Best blastx score 169);gbkey=CDS;gene=ML0780;product=putative membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	925681	926163	.	+	.	ID=gene-ML0781;Name=ML0781;gbkey=Gene;gene=ML0781;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	925681	926163	.	+	0	ID=cds-CAC30290.1;Parent=gene-ML0781;Dbxref=GOA:Q9CCI6,InterPro:IPR006037,InterPro:IPR026278,UniProtKB/TrEMBL:Q9CCI6,NCBI_GP:CAC30290.1;Name=CAC30290.1;Note=Similar to Mycobacterium tuberculosis hypothetical 17.2 kDa protein RV3237C OR MTCY20B11.12C TR:O05882 (EMBL:Z95121) fasta scores: E(): 0%2C 80.6%25 id in 160 aa%2C to Deinococcus radiodurans conserved hypothetical protein DR1148 TR:Q9RV81 (EMBL:AE001964) fasta scores: E(): 1.1e-19%2C 38.0%25 id in 158 aa and to Streptomyces coelicolor hypothetical 17.1 kDa protein SC66T3.12 TR:Q9XAK1 (EMBL:AL079348) fasta scores: E(): 5.5e-14%2C 37.9%25 id in 153 aa.;gbkey=CDS;gene=ML0781;product=conserved hypothetical protein;protein_id=CAC30290.1;transl_table=11
AL450380.1	EMBL	gene	926168	927325	.	+	.	ID=gene-ML0782;Name=ML0782;gbkey=Gene;gene=ML0782;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	926168	927325	.	+	0	ID=cds-CAC30291.1;Parent=gene-ML0782;Dbxref=GOA:Q9CCI5,InterPro:IPR006153,UniProtKB/TrEMBL:Q9CCI5,NCBI_GP:CAC30291.1;Name=CAC30291.1;Note=Similar to Mycobacterium tuberculosis putative transmembrane transport protein RV3236C OR MTCY20B11.11C TR:O05881 (EMBL:Z95121) fasta scores: E(): 0%2C 81.8%25 id in 385 aa%2C and to Escherichia coli glutathione-regulated potassium-efflux system protein kefB OR trkB SW:KEFB_ECOLI (P45522) fasta scores: E(): 4.7e-13%2C 26.0%25 id in 362 aa. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0782;product=putative transmembrane transport protein;protein_id=CAC30291.1;transl_table=11
AL450380.1	EMBL	pseudogene	927401	927982	.	-	.	ID=gene-ML0783;Name=ML0783;gbkey=Gene;gene=ML0783;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	927401	927982	.	-	0	ID=cds-ML0783;Parent=gene-ML0783;Note=Possible pseudogene of M. tuberculosis orthologue Rv3235 (Best blastx score 155);gbkey=CDS;gene=ML0783;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	928181	928874	.	+	.	ID=gene-ML0784;Name=ML0784;gbkey=Gene;gene=ML0784;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	928181	928874	.	+	0	ID=cds-ML0784;Parent=gene-ML0784;Note=Possible pseudogene of M. tuberculosis orthologue Rv3234c (Best blastx score 286);gbkey=CDS;gene=ML0784;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	928967	929496	.	+	.	ID=gene-ML0785;Name=ML0785;gbkey=Gene;gene=ML0785;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	928967	929496	.	+	0	ID=cds-ML0785;Parent=gene-ML0785;Note=Possible pseudogene of M. tuberculosis orthologue Rv3233c (Best blastx score 202);gbkey=CDS;gene=ML0785;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	929727	930223	.	+	.	ID=gene-ML0786;Name=ML0786;gbkey=Gene;gene=ML0786;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	929727	930223	.	+	0	ID=cds-ML0786;Parent=gene-ML0786;Note=Possible pseudogene of M. tuberculosis orthologue Rv3232c (Best blastx score 85);gbkey=CDS;gene=ML0786;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	930316	930630	.	+	.	ID=gene-ML0787;Name=ML0787;gbkey=Gene;gene=ML0787;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	930316	930630	.	+	0	ID=cds-ML0787;Parent=gene-ML0787;Note=Possible pseudogene of M. tuberculosis orthologue Rv3231c (Best blastx score 184);gbkey=CDS;gene=ML0787;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	930894	931942	.	+	.	ID=gene-ML0788;Name=ML0788;gbkey=Gene;gene=ML0788;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	930894	931942	.	+	0	ID=cds-ML0788;Parent=gene-ML0788;Note=Possible pseudogene of M. tuberculosis orthologue Rv3230c (Best blastx score 278);gbkey=CDS;gene=ML0788;product=putative oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	932051	933307	.	+	.	ID=gene-desA3;Name=desA3;gbkey=Gene;gene=desA3;gene_biotype=pseudogene;gene_synonym=ML0789;pseudo=true
AL450380.1	EMBL	CDS	932051	933307	.	+	0	ID=cds-desA3;Parent=gene-desA3;Note=Possible pseudogene of M. tuberculosis orthologue desA3 (Best blastx score 343);gbkey=CDS;gene=desA3;product=acyl-[ACP] desaturase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	933510	934326	.	-	.	ID=gene-ML0790;Name=ML0790;gbkey=Gene;gene=ML0790;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	933510	934326	.	-	0	ID=cds-ML0790;Parent=gene-ML0790;Note=Possible pseudogene similar to M. tuberculosis putative beta-ketoadipyl CoA thiolases (Best blastx score 143);gbkey=CDS;gene=ML0790;product=beta-ketoadipyl-CoA thiolase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	934528	935511	.	-	.	ID=gene-ML0791;Name=ML0791;gbkey=Gene;gene=ML0791;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	934528	935511	.	-	0	ID=cds-CAC30300.1;Parent=gene-ML0791;Dbxref=GOA:Q9CCI4,InterPro:IPR004881,InterPro:IPR010914,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CCI4,NCBI_GP:CAC30300.1;Name=CAC30300.1;Note=Similar to Mycobacterium tuberculosis hypothetical 34.9 kDa protein RV3228 OR MTCY20B11.03 TR:O05873 (EMBL:Z95121) fasta scores: E(): 0%2C 84.0%25 id in 331 aa. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML0791;product=conserved hypothetical protein;protein_id=CAC30300.1;transl_table=11
AL450380.1	EMBL	sequence_feature	934876	934899	.	-	.	ID=id-ML0791;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML0791
AL450380.1	EMBL	gene	935508	936800	.	-	.	ID=gene-aroA;Name=aroA;gbkey=Gene;gene=aroA;gene_biotype=protein_coding;gene_synonym=ML0792
AL450380.1	EMBL	CDS	935508	936800	.	-	0	ID=cds-CAC30301.1;Parent=gene-aroA;Dbxref=GOA:Q9CCI3,InterPro:IPR001986,InterPro:IPR006264,InterPro:IPR013792,InterPro:IPR023193,NCBI_GP:CAC30301.1;Name=CAC30301.1;Note=Similar to Mycobacterium tuberculosis 3-phosphoshikimate 1-carboxyvinyltransferase aroA OR RV3227 OR MTCY20B11.02 SW:AROA_MYCTU (P22487) fasta scores: E(): 0%2C 79.0%25 id in 428 aa%2C and to Yersinia enterocolitica 3-phosphoshikimate 1-carboxyvinyltransferase aroA SW:AROA_YEREN (P19688) fasta scores: E(): 1.2e-31%2C 33.1%25 id in 432 aa. Contains Pfam match to entry PF00275 EPSP_syntase%2C EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase). Contains PS00885 EPSP synthase signature 2.;gbkey=CDS;gene=aroA;product=putative 3-phosphoshikimate 1-carboxyvinyl transferase;protein_id=CAC30301.1;transl_table=11
AL450380.1	EMBL	sequence_feature	935538	936776	.	-	.	ID=id-aroA;Note=Pfam match to entry PF00275 EPSP_syntase%2C EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)%2C score 608.10%2C E-value 5.3e-179;gbkey=misc_feature;gene=aroA
AL450380.1	EMBL	sequence_feature	935727	935783	.	-	.	ID=id-aroA-2;Note=PS00885 EPSP synthase signature 2;gbkey=misc_feature;gene=aroA
AL450380.1	EMBL	ribosome_entry_site	935519	935525	.	-	.	ID=id-aroA-3;Parent=gene-aroA;Note=possible RBS;gbkey=regulatory;gene=aroA;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	ribosome_entry_site	936806	936812	.	-	.	ID=id-AL450380.1:936806..936812;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	936847	937605	.	+	.	ID=gene-ML0793;Name=ML0793;gbkey=Gene;gene=ML0793;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	936847	937605	.	+	0	ID=cds-CAC30302.1;Parent=gene-ML0793;Dbxref=InterPro:IPR003738,UniProtKB/TrEMBL:Q9CCI2,NCBI_GP:CAC30302.1;Name=CAC30302.1;Note=Similar to Mycobacterium tuberculosis hypothetical 27.6 kDa protein RV3226C OR MTCY20B11.01C TR:O05872 (EMBL:Z95121) fasta scores: E(): 0%2C 70.6%25 id in 252 aa%2C and to Bacteriophage SPBc2 yoqW protein TR:O64131 (EMBL:AF020713) fasta scores: E(): 4.8e-21%2C 36.5%25 id in 244 aa.;gbkey=CDS;gene=ML0793;product=putative bacteriophage protein;protein_id=CAC30302.1;transl_table=11
AL450380.1	EMBL	pseudogene	937636	938913	.	-	.	ID=gene-ML0794;Name=ML0794;gbkey=Gene;gene=ML0794;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	937636	938913	.	-	0	ID=cds-ML0794;Parent=gene-ML0794;Note=Possible pseudogene of M. tuberculosis REP-family proteins (Best blastx score 135);gbkey=CDS;gene=ML0794;product=REP-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	939222	941360	.	-	.	ID=gene-atsD;Name=atsD;gbkey=Gene;gene=atsD;gene_biotype=pseudogene;gene_synonym=ML0795;pseudo=true
AL450380.1	EMBL	CDS	939222	941360	.	-	0	ID=cds-atsD;Parent=gene-atsD;Note=Possible pseudogene of M. tuberculosis orthologue atsD (Best blastx score 485);gbkey=CDS;gene=atsD;product=putative arylsulfatase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	942266	942442	.	+	.	ID=gene-ML0796;Name=ML0796;gbkey=Gene;gene=ML0796;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	942266	942442	.	+	0	ID=cds-CAC30305.1;Parent=gene-ML0796;Dbxref=UniProtKB/TrEMBL:Q7AQF5,NCBI_GP:CAC30305.1;Name=CAC30305.1;Note=Similar to the N-termini of Mycobacterium tuberculosis putative response regulator RV0844C OR MTV043.37C TR:O53856 (EMBL:AL022004) fasta scores: E(): 0.2%2C 39.7%25 id in 63 aa and Streptomyces coelicolor absA2 OR SCE8.19 TR:Q53894 (EMBL:U51332) fasta scores: E(): 4.3%2C 38.5%25 id in 52 aa. May be a on ORF within a regulator protein pseudogene.;gbkey=CDS;gene=ML0796;product=hypothetical protein;protein_id=CAC30305.1;transl_table=11
AL450380.1	EMBL	pseudogene	943529	944968	.	-	.	ID=gene-PPE-5;Name=PPE;gbkey=Gene;gene=PPE;gene_biotype=pseudogene;gene_synonym=ML0797;pseudo=true
AL450380.1	EMBL	CDS	943529	944968	.	-	0	ID=cds-PPE-4;Parent=gene-PPE-5;Note=Possible pseudogene similar to M. tuberculosis PPE-family proteins (Best blastx score 193);gbkey=CDS;gene=PPE;product=PPE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	946524	948302	.	-	.	ID=gene-ML0798;Name=ML0798;gbkey=Gene;gene=ML0798;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	946524	948302	.	-	0	ID=cds-CAC30307.1;Parent=gene-ML0798;Dbxref=InterPro:IPR002586,InterPro:IPR011990,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CCI1,NCBI_GP:CAC30307.1;Name=CAC30307.1;Note=Similar to Mycobacterium tuberculosis ATP/GTP binding protein Rv2787 or MTV002.52 TR:O33329 (EMBL:AL008967) fasta scores: E(): 0%2C 76.5%25 id in 587 aa and to other M. tuberculosis hypothetical proteins. Contains PS00017 ATP/GTP-binding site motif A (P-loop).%3B~C-terminal half is similar to that of ML0048. Also similar to ML1536;gbkey=CDS;gene=ML0798;product=conserved hypothetical protein;protein_id=CAC30307.1;transl_table=11
AL450380.1	EMBL	sequence_feature	947298	947321	.	-	.	ID=id-ML0798;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML0798
AL450380.1	EMBL	ribosome_entry_site	948312	948316	.	-	.	ID=id-AL450380.1:948312..948316;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	repeat_region	948935	948964	.	+	.	ID=id-AL450380.1:948935..948964;Note=15 tandem copies of dinucleotide repeat%2C AT;gbkey=repeat_region
AL450380.1	EMBL	gene	949041	949448	.	-	.	ID=gene-ML0799;Name=ML0799;gbkey=Gene;gene=ML0799;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	949041	949448	.	-	0	ID=cds-CAC30308.1;Parent=gene-ML0799;Dbxref=GOA:Q9CCI0,InterPro:IPR007214,UniProtKB/TrEMBL:Q9CCI0,NCBI_GP:CAC30308.1;Name=CAC30308.1;Note=Similar to Mycobacterium smegmatis hypothetical 19.1 kDa protein TR:Q9XCD9 (EMBL:AF144091) fasta scores: E(): 1e-15%2C 60.2%25 id in 93 aa and to other hypothetical proteins e.g. Salmonella typhimurium 17.0 kDa protein in ushA 3'region ybaK SW:YBAK_SALTY (P37174) fasta scores: E(): 6e-08%2C 40.9%25 id in 88 aa.;gbkey=CDS;gene=ML0799;product=conserved hypothetical protein;protein_id=CAC30308.1;transl_table=11
AL450380.1	EMBL	pseudogene	949526	950328	.	-	.	ID=gene-ML0800;Name=ML0800;gbkey=Gene;gene=ML0800;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	949526	950328	.	-	0	ID=cds-ML0800;Parent=gene-ML0800;Note=Possible pseudogene of M. tuberculosis orthologue Rv3224 (Best blastx score 426);gbkey=CDS;gene=ML0800;product=putative oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	950848	951067	.	+	.	ID=gene-sigH;Name=sigH;gbkey=Gene;gene=sigH;gene_biotype=pseudogene;gene_synonym=ML0801;pseudo=true
AL450380.1	EMBL	CDS	950848	951067	.	+	0	ID=cds-sigH;Parent=gene-sigH;Note=Possible pseudogene of M. tuberculosis orthologue sigH (Best blastx score 162);gbkey=CDS;gene=sigH;product=ECF subfamily sigma subunit (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	951240	951438	.	+	.	ID=gene-ML0802A;Name=ML0802A;gbkey=Gene;gene=ML0802A;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	951240	951438	.	+	0	ID=cds-ML0802A;Parent=gene-ML0802A;Note=ML0802A. Possible pseudogene of Rv3222Ac%2C probable anti-sigma factor (Best blastx score 176);gbkey=CDS;gene=ML0802A;pseudo=true;transl_table=11
AL450380.1	EMBL	gene	951814	952053	.	+	.	ID=gene-ML0802;Name=ML0802;gbkey=Gene;gene=ML0802;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	951814	952053	.	+	0	ID=cds-CAC30312.1;Parent=gene-ML0802;Dbxref=InterPro:IPR000089,InterPro:IPR011053,NCBI_GP:CAC30312.1;Name=CAC30312.1;Note=Similar to Mycobacterium tuberculosis hypothetical 7.3 kDa protein Rv3221c or MTCY07d11.05 TR:O05845 (EMBL:Z95120) fasta scores: E(): 6.2e-19%2C 90.1%25 id in 71 aa and to the C-terminal half of Propionigenium modestum methylmalonyl-CoA decarboxylase%2C gamma-subunit mmdC (134 aa) TR:O54030 (EMBL:AJ002015) fasta scores: E(): 3.4e-06%2C 42.9%25 id in 70 aa. Contains Pfam match to entry PF00364 biotin_lipoyl%2C Biotin-requiring enzymes. Contains PS00445 FGGY family of carbohydrate kinases signature 2.;gbkey=CDS;gene=ML0802;product=conserved hypothetical protein;protein_id=CAC30312.1;transl_table=11
AL450380.1	EMBL	sequence_feature	951817	951882	.	+	.	ID=id-ML0802;Note=PS00445 FGGY family of carbohydrate kinases signature 2;gbkey=misc_feature;gene=ML0802
AL450380.1	EMBL	sequence_feature	951844	952047	.	+	.	ID=id-ML0802-2;Note=Pfam match to entry PF00364 biotin_lipoyl%2C Biotin-requiring enzymes%2C score 59.20%2C E-value 9.2e-14;gbkey=misc_feature;gene=ML0802
AL450380.1	EMBL	ribosome_entry_site	952093	952098	.	+	.	ID=id-AL450380.1:952093..952098;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	952103	953605	.	+	.	ID=gene-ML0803;Name=ML0803;gbkey=Gene;gene=ML0803;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	952103	953605	.	+	0	ID=cds-CAC30313.1;Parent=gene-ML0803;Dbxref=GOA:Q9CCH8,InterPro:IPR000014,InterPro:IPR003594,InterPro:IPR005467,InterPro:IPR011495,InterPro:IPR013656,InterPro:IPR022066,UniProtKB/TrEMBL:Q9CCH8,NCBI_GP:CAC30313.1;Name=CAC30313.1;Note=Similar to Mycobacterium tuberculosis hypothetical 54.0 kDa protein Rv3220c or MTCY07D11.06 TR:O05846 (EMBL:Z95120) fasta scores: E(): 0%2C 81.8%25 id in 501 aa and shows weak similarity to Pseudomonas aeruginosa alginate biosynthesis sensor protein kinB TR:O34206 (EMBL:U97063) fasta scores: E(): 1.3e-06%2C 26.9%25 id in 346 aa. Contains Pfam match to entry PF00512 signal%2C Histidine kinase.;gbkey=CDS;gene=ML0803;product=putative two-component system sensor kinase;protein_id=CAC30313.1;transl_table=11
AL450380.1	EMBL	sequence_feature	953006	953575	.	+	.	ID=id-ML0803;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score -32.30%2C E-value 0.0027;gbkey=misc_feature;gene=ML0803
AL450380.1	EMBL	gene	953665	953919	.	-	.	ID=gene-whiB1;Name=whiB1;gbkey=Gene;gene=whiB1;gene_biotype=protein_coding;gene_synonym=ML0804
AL450380.1	EMBL	CDS	953665	953919	.	-	0	ID=cds-CAC30314.1;Parent=gene-whiB1;Dbxref=GOA:Q9CCH7,InterPro:IPR003482,UniProtKB/TrEMBL:Q9CCH7,NCBI_GP:CAC30314.1;Name=CAC30314.1;Note=Similar to Mycobacterium tuberculosis hypothetical 9.3 kDa protein Rv3219 or MTCY07D11.07c TR:O05847 (EMBL:Z95120) fasta scores: E(): 0%2C 95.2%25 id in 84 aa%2C to Mycobacterium smegmatis whiB3 TR:Q9Z6E9 (EMBL:AF073300) fasta scores: E(): 2e-10%2C 43.2%25 id in 81 aa and to Streptomyces coelicolor WhiD protein whiD or SC6G4.45c or wblB TR:O88103 (EMBL:AJ010601) fasta scores: E(): 2.7e-10%2C 50.7%25 id in 75 aa.%3B~Similar to ML0382%2C ML0639%2C ML0760 and ML2307;gbkey=CDS;gene=whiB1;product=putative transcriptional regulator;protein_id=CAC30314.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	953928	953934	.	-	.	ID=id-AL450380.1:953928..953934;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	954248	955184	.	-	.	ID=gene-ML0805;Name=ML0805;gbkey=Gene;gene=ML0805;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	954248	955184	.	-	0	ID=cds-ML0805;Parent=gene-ML0805;Note=Possible pseudogene of M. tuberculosis orthologue Rv3218 (Best blastx score 324);gbkey=CDS;gene=ML0805;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	955206	955727	.	+	.	ID=gene-ML0806;Name=ML0806;gbkey=Gene;gene=ML0806;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	955206	955727	.	+	0	ID=cds-CAC30316.1;Parent=gene-ML0806;Dbxref=UniProtKB/TrEMBL:Q9CCH6,NCBI_GP:CAC30316.1;Name=CAC30316.1;Note=Similar to Mycobacterium tuberculosis hypothetical 14.3 kDa protein Rv3217c or MTCY07D11.09 TR:O05849 (EMBL:Z95120) fasta scores: E(): 0%2C 77.1%25 id in 140 aa. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0806;product=putative membrane protein;protein_id=CAC30316.1;transl_table=11
AL450380.1	EMBL	pseudogene	955682	955997	.	-	.	ID=gene-ML0807;Name=ML0807;gbkey=Gene;gene=ML0807;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	955682	955997	.	-	0	ID=cds-ML0807;Parent=gene-ML0807;Note=Possible pseudogene of M. tuberculosis orthologue Rv3216 (Best blastx score 171);gbkey=CDS;gene=ML0807;product=possible acyltransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	956155	957888	.	-	.	ID=gene-entC;Name=entC;gbkey=Gene;gene=entC;gene_biotype=protein_coding;gene_synonym=ML0808
AL450380.1	EMBL	CDS	956155	957888	.	-	0	ID=cds-CAC30318.1;Parent=gene-entC;Dbxref=GOA:Q9CCH5,InterPro:IPR004561,InterPro:IPR005801,InterPro:IPR015890,InterPro:IPR029033,UniProtKB/TrEMBL:Q9CCH5,NCBI_GP:CAC30318.1;Name=CAC30318.1;Note=Similar to Mycobacterium tuberculosis putative isochorismate synthase entC or Rv3215 or MTCY07D11.11c (372 aa) TR:O05851 (EMBL:Z95120) fasta scores: E(): 0%2C 73.5%25 id in 366 aa and to Bacillus subtilis isochorismate synthase dhbC (398 aa) SW:DHBC_BACSU (P45744) fasta scores: E(): 0%2C 37.9%25 id in 396 aa. The predicted CDS has an N-terminal extension of approx. 210 aa not present in known isochorismate synthases. Contains Pfam match to entry PF00425 chorismate_bind%2C chorismate binding enzyme.%3B~Similar to ML0236 and ML1269;gbkey=CDS;gene=entC;product=putative isochorismate synthase;protein_id=CAC30318.1;transl_table=11
AL450380.1	EMBL	sequence_feature	956170	956991	.	-	.	ID=id-entC;Note=Pfam match to entry PF00425 chorismate_bind%2C chorismate binding enzyme%2C score 237.20%2C E-value 6.5e-68;gbkey=misc_feature;gene=entC
AL450380.1	EMBL	pseudogene	958210	958641	.	+	.	ID=gene-ML0809;Name=ML0809;gbkey=Gene;gene=ML0809;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	958210	958641	.	+	0	ID=cds-ML0809;Parent=gene-ML0809;Note=Possible pseudogene of M. tuberculosis orthologue Rv3213c (Best blastx score 239);gbkey=CDS;gene=ML0809;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	958882	960105	.	-	.	ID=gene-ML0810;Name=ML0810;gbkey=Gene;gene=ML0810;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	958882	960105	.	-	0	ID=cds-CAC30320.1;Parent=gene-ML0810;Dbxref=InterPro:IPR011047,InterPro:IPR015943,UniProtKB/TrEMBL:Q9CCH4,NCBI_GP:CAC30320.1;Name=CAC30320.1;Note=Similar to Mycobacterium tuberculosis hypothetical 42.5 kDa protein Rv3212 or MTCY07D11.14c (407 aa) TR:O05854 (EMBL:Z95120) fasta scores: E(): 0%2C 79.9%25 id in 407 aa. Contains hydrophobic%2C possible membrane-spanning region.;gbkey=CDS;gene=ML0810;product=putative membrane protein;protein_id=CAC30320.1;transl_table=11
AL450380.1	EMBL	gene	960117	961751	.	-	.	ID=gene-rhlE;Name=rhlE;gbkey=Gene;gene=rhlE;gene_biotype=protein_coding;gene_synonym=ML0811
AL450380.1	EMBL	CDS	960117	961751	.	-	0	ID=cds-CAC30321.1;Parent=gene-rhlE;Dbxref=GOA:Q9CCH3,InterPro:IPR000629,InterPro:IPR001650,InterPro:IPR011545,InterPro:IPR014001,InterPro:IPR014014,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CCH3,NCBI_GP:CAC30321.1;Name=CAC30321.1;Note=Similar to Mycobacterium tuberculosis putative ATP-dependent RNA helicase Rv3211 or MTCY07D11.15c (407 aa) TR:O05855 (EMBL:Z95120) fasta scores: E(): 0%2C 74.8%25 id in 531 aa%2C and to Klebsiella pneumoniae ATP-dependent RNA helicase deaD SW:DEAD_KLEPN (P33906) fasta scores: E(): 0%2C 43.2%25 id in 380 aa. Contains Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain. Contains Pfam match to entry PF00270 DEAD%2C DEAD/DEAH box helicase. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00039 DEAD-box subfamily ATP-dependent helicases signature.;gbkey=CDS;gene=rhlE;product=putative ATP-dependent RNA helicase;protein_id=CAC30321.1;transl_table=11
AL450380.1	EMBL	sequence_feature	960612	960857	.	-	.	ID=id-rhlE;Note=Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain%2C score 119.80%2C E-value 5.3e-32;gbkey=misc_feature;gene=rhlE
AL450380.1	EMBL	sequence_feature	960966	961619	.	-	.	ID=id-rhlE-2;Note=Pfam match to entry PF00270 DEAD%2C DEAD/DEAH box helicase%2C score 200.20%2C E-value 2.2e-62;gbkey=misc_feature;gene=rhlE
AL450380.1	EMBL	sequence_feature	961152	961178	.	-	.	ID=id-rhlE-3;Note=PS00039 DEAD-box subfamily ATP-dependent helicases signature;gbkey=misc_feature;gene=rhlE
AL450380.1	EMBL	sequence_feature	961503	961526	.	-	.	ID=id-rhlE-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=rhlE
AL450380.1	EMBL	pseudogene	961966	962652	.	+	.	ID=gene-ML0812;Name=ML0812;gbkey=Gene;gene=ML0812;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	961966	962652	.	+	0	ID=cds-ML0812;Parent=gene-ML0812;Note=Possible pseudogene of M. tuberculosis orthologue Rv3210c (Best blastx score 523);gbkey=CDS;gene=ML0812;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	962707	963294	.	-	.	ID=gene-ML0813;Name=ML0813;gbkey=Gene;gene=ML0813;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	962707	963294	.	-	0	ID=cds-CAC30323.1;Parent=gene-ML0813;Dbxref=InterPro:IPR008693,UniProtKB/TrEMBL:Q9CCH2,NCBI_GP:CAC30323.1;Name=CAC30323.1;Note=Similar to Mycobacterium tuberculosis hypothetical 19.1 kDa protein Rv3209 or MTCY07D11.17c (186 aa) TR:O05857 (EMBL:Z95120) fasta scores: E(): 8.5e-23%2C 58.4%25 id in 185 aa and to Mycobacterium tuberculosis putative membrane protein mmpS3 or Rv2198c or MTCY190.09c (299 aa) SW:MMS3_MYCTU (Q10390) fasta scores: E(): 9.4e-08%2C 31.0%25 id in 203 aa. Contains hydrophobic%2C possible membrane-spanning region.%3B~Similar to ML0431 and ML0877;gbkey=CDS;gene=ML0813;product=putative membrane protein;protein_id=CAC30323.1;transl_table=11
AL450380.1	EMBL	gene	963593	963841	.	+	.	ID=gene-ML0814;Name=ML0814;gbkey=Gene;gene=ML0814;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	963593	963841	.	+	0	ID=cds-CAC30324.1;Parent=gene-ML0814;Dbxref=InterPro:IPR021456,UniProtKB/TrEMBL:Q9CCH1,NCBI_GP:CAC30324.1;Name=CAC30324.1;Note=Unknown but equivalent to M.tuberculosis Rv3208c and similar to Streptomyces coelicolor hypothetical protein. FASTA scores: Rv3208c%2C E(): 3e-32%2C 82%25 identity in 82 aa%3B gp|AL390975|AL390975_32 Streptomyces coelicolor (94 aa) E(): 2.5e-09%3B 47.945%25 identity in 73 aa overlap;gbkey=CDS;gene=ML0814;product=conserved hypothetical protein;protein_id=CAC30324.1;transl_table=11
AL450380.1	EMBL	gene	963828	964514	.	-	.	ID=gene-ML0815;Name=ML0815;gbkey=Gene;gene=ML0815;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	963828	964514	.	-	0	ID=cds-CAC30325.1;Parent=gene-ML0815;Dbxref=GOA:Q9CCH0,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR011075,InterPro:IPR015893,UniProtKB/TrEMBL:Q9CCH0,NCBI_GP:CAC30325.1;Name=CAC30325.1;Note=Similar to Mycobacterium tuberculosis putative TetR-family transcriptional regulator Rv3208 or MTCY07D11.18c (228 aa) TR:O05858 (EMBL:Z95120) fasta scores: E(): 0%2C 82.4%25 id in 227 aa. Contains a probable helix-turn-helix motif at aa 60-81 (Score 1517%2C SD +4.35) Contains Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family.;gbkey=CDS;gene=ML0815;product=putative TetR-family transcriptional regulator;protein_id=CAC30325.1;transl_table=11
AL450380.1	EMBL	sequence_feature	964245	964385	.	-	.	ID=id-ML0815;Note=Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family%2C score 71.30%2C E-value 2.1e-17;gbkey=misc_feature;gene=ML0815
AL450380.1	EMBL	ribosome_entry_site	964519	964523	.	-	.	ID=id-AL450380.1:964519..964523;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	964701	965726	.	+	.	ID=gene-ML0816;Name=ML0816;gbkey=Gene;gene=ML0816;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	964701	965726	.	+	0	ID=cds-CAC30326.1;Parent=gene-ML0816;Dbxref=GOA:Q9CCG9,InterPro:IPR006026,InterPro:IPR022603,UniProtKB/TrEMBL:Q9CCG9,NCBI_GP:CAC30326.1;Name=CAC30326.1;Note=Similar to Mycobacterium tuberculosis hypothetical 31.0 kDa protein Rv3207c or MTCY07D11.19 (285 aa) TR:O05859 (EMBL:Z95120) fasta scores: E(): 0%2C 80.6%25 id in 284 aa%2C and to Streptomyces coelicolor putative membrane protein SC2H12.28c (314 aa) TR:CAB94652 (EMBL:AL359215) fasta scores: E(): 1e-13%2C 30.2%25 id in 331 aa.;gbkey=CDS;gene=ML0816;product=conserved hypothetical protein;protein_id=CAC30326.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	965916	965920	.	+	.	ID=id-AL450380.1:965916..965920;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	965930	967117	.	+	.	ID=gene-moeZ;Name=moeZ;gbkey=Gene;gene=moeZ;gene_biotype=protein_coding;gene_synonym=ML0817
AL450380.1	EMBL	CDS	965930	967117	.	+	0	ID=cds-CAC30327.1;Parent=gene-moeZ;Dbxref=GOA:Q9CCG8,InterPro:IPR000594,InterPro:IPR001763,InterPro:IPR007901,InterPro:IPR009036,InterPro:IPR016040,UniProtKB/TrEMBL:Q9CCG8,NCBI_GP:CAC30327.1;Name=CAC30327.1;Note=Similar to M. tuberculosis moeZ%2C Rv3206c%2C moeB homologue%2C TR:O05860 (EMBL:AL123456) (392 aa)%3B Fasta score E(): 0%2C 86.4%25 identity in 391 aa overlap and to M. tuberculosis moeB%2C Rv3116%2C putative molybdopterin biosynthesis protein%2C TR:O05792 (EMBL:AL123456) (389 aa)%3B Fasta score E(): 0%2C 57.8%25 identity in 384 aa overlap. Similar to many e.g. Arabidopsis thaliana cnx5%2C molybdopterin synthase sulphurylase%2C TR:Q9ZNW0 (EMBL:AF124160) (464 aa)%3B Fasta score E(): 0%2C 34.5%25 identity in 406 aa overlap. Contains Pfam match to entry PF00581 Rhodanese%2C Rhodanese-like domain. Contains Pfam match to entry PF00899 ThiF_family%2C ThiF family.;gbkey=CDS;gene=moeZ;product=probably involved in molybdopterin biosynthesis;protein_id=CAC30327.1;transl_table=11
AL450380.1	EMBL	sequence_feature	966059	966469	.	+	.	ID=id-moeZ;Note=Pfam match to entry PF00899 ThiF_family%2C ThiF family%2C score 220.20%2C E-value 3e-62;gbkey=misc_feature;gene=moeZ
AL450380.1	EMBL	sequence_feature	966806	967090	.	+	.	ID=id-moeZ-2;Note=Pfam match to entry PF00581 Rhodanese%2C Rhodanese-like domain%2C score 49.80%2C E-value 6.2e-11;gbkey=misc_feature;gene=moeZ
AL450380.1	EMBL	gene	967172	968065	.	+	.	ID=gene-ML0818;Name=ML0818;gbkey=Gene;gene=ML0818;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	967172	968065	.	+	0	ID=cds-CAC30328.1;Parent=gene-ML0818;Dbxref=InterPro:IPR013402,UniProtKB/TrEMBL:Q9CCG7,NCBI_GP:CAC30328.1;Name=CAC30328.1;Note=Similar to M. tuberculosis Rv3205c%2C hypothetical protein%2C TR:O05861 (EMBL:AL123456) (292 aa)%3B Fasta score E(): 0%2C 87.3%25 identity in 291 aa overlap.;gbkey=CDS;gene=ML0818;product=conserved hypothetical protein;protein_id=CAC30328.1;transl_table=11
AL450380.1	EMBL	pseudogene	968156	968444	.	-	.	ID=gene-ML0819;Name=ML0819;gbkey=Gene;gene=ML0819;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	968156	968444	.	-	0	ID=cds-ML0819;Parent=gene-ML0819;Note=Possible pseudogene of M. tuberculosis orthologue Rv3204 (Best blastx score 245);gbkey=CDS;gene=ML0819;product=putative methyltransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	968478	969131	.	-	.	ID=gene-lipV;Name=lipV;gbkey=Gene;gene=lipV;gene_biotype=pseudogene;gene_synonym=ML0820;pseudo=true
AL450380.1	EMBL	CDS	968478	969131	.	-	0	ID=cds-lipV;Parent=gene-lipV;Note=Possible pseudogene of M. tuberculosis orthologue lipV (Best blastx score 236);gbkey=CDS;gene=lipV;product=probable lipase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	969793	972899	.	+	.	ID=gene-ML0821;Name=ML0821;gbkey=Gene;gene=ML0821;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	969793	972899	.	+	0	ID=cds-ML0821;Parent=gene-ML0821;Note=Possible pseudogene of M. tuberculosis orthologue Rv3202c (Best blastx score 725);gbkey=CDS;gene=ML0821;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	972938	975898	.	+	.	ID=gene-ML0822;Name=ML0822;gbkey=Gene;gene=ML0822;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	972938	975898	.	+	0	ID=cds-ML0822;Parent=gene-ML0822;Note=Possible pseudogene of M. tuberculosis orthologue Rv3201c (Best blastx score 510);gbkey=CDS;gene=ML0822;product=probable ATP-dependent DNA helicase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	976026	977052	.	+	.	ID=gene-ML0823;Name=ML0823;gbkey=Gene;gene=ML0823;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	976026	977052	.	+	0	ID=cds-ML0823;Parent=gene-ML0823;Note=Possible pseudogene of M. tuberculosis orthologue Rv3200c (Best blastx score 571);gbkey=CDS;gene=ML0823;product=putative potassium channel (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	977017	977777	.	+	.	ID=id-AL450380.1:977017..977777;Note=Dispersed repeat%2C RLEP%2C copy 9;gbkey=repeat_region
AL450380.1	EMBL	gene	977783	978178	.	-	.	ID=gene-furB;Name=furB;gbkey=Gene;gene=furB;gene_biotype=protein_coding;gene_synonym=ML0824
AL450380.1	EMBL	CDS	977783	978178	.	-	0	ID=cds-CAC30334.1;Parent=gene-furB;Dbxref=GOA:Q9CCG6,InterPro:IPR002481,InterPro:IPR011991,UniProtKB/TrEMBL:Q9CCG6,NCBI_GP:CAC30334.1;Name=CAC30334.1;Note=Similar to Mycobacterium tuberculosis cosmid y27 fur or Rv2359 or MTCY27.21c TR:O05839 (EMBL:Z95208) (130 aa) fasta scores: E(): 0%2C 86.9%25 id in 130 aa%2C and to Escherichia coli ferric uptake regulation protein fur SW:FUR_ECOLI (P06975) (148 aa) fasta scores: E(): 2.1e-13%2C 37.2%25 id in 129 aa. Contains Pfam match to entry PF01475 FUR%2C Ferric uptake regulator family.;gbkey=CDS;gene=furB;product=putative ferric uptake regulatory protein;protein_id=CAC30334.1;transl_table=11
AL450380.1	EMBL	sequence_feature	977810	978169	.	-	.	ID=id-furB;Note=Pfam match to entry PF01475 FUR%2C Ferric uptake regulator family%2C score 185.20%2C E-value 1e-51;gbkey=misc_feature;gene=furB
AL450380.1	EMBL	gene	978252	978674	.	-	.	ID=gene-ML0825;Name=ML0825;gbkey=Gene;gene=ML0825;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	978252	978674	.	-	0	ID=cds-CAC30335.1;Parent=gene-ML0825;Dbxref=GOA:Q9CCG5,InterPro:IPR001845,InterPro:IPR011991,UniProtKB/TrEMBL:Q9CCG5,NCBI_GP:CAC30335.1;Name=CAC30335.1;Note=Similar to Mycobacterium tuberculosis putative transcriptional regulator Rv2358 or MTCY27.22c TR:O05840 (EMBL:Z95208) (135 aa) fasta scores: E(): 0%2C 72.9%25 id in 140 aa. Contains a probable helix-turn-helix motif at aa 77-98 (Score 1179%2C SD +3.20) Contains Pfam match to entry PF01022 HTH_5%2C Bacterial regulatory protein%2C arsR family.;gbkey=CDS;gene=ML0825;product=putative ArsR-family transcriptional regulator;protein_id=CAC30335.1;transl_table=11
AL450380.1	EMBL	sequence_feature	978273	978506	.	-	.	ID=id-ML0825;Note=Pfam match to entry PF01022 HTH_5%2C Bacterial regulatory protein%2C arsR family%2C score 79.00%2C E-value 1e-19;gbkey=misc_feature;gene=ML0825
AL450380.1	EMBL	gene	978841	980232	.	+	.	ID=gene-glyS;Name=glyS;gbkey=Gene;gene=glyS;gene_biotype=protein_coding;gene_synonym=ML0826
AL450380.1	EMBL	CDS	978841	980232	.	+	0	ID=cds-CAC30336.1;Parent=gene-glyS;Dbxref=GOA:Q9CCG4,InterPro:IPR002314,InterPro:IPR002315,InterPro:IPR004154,InterPro:IPR006195,InterPro:IPR022961,InterPro:IPR027031,UniProtKB/TrEMBL:Q9CCG4,NCBI_GP:CAC30336.1;Name=CAC30336.1;Note=Similar to Mycobacterium tuberculosis glycyl-tRNA synthetase glyS or Rv2357c or MTCY27.23 or MTCY98.26 SW:SYG_MYCTU (O65932) (463 aa) fasta scores: E(): 0%2C 90.2%25 id in 459 aa and to Thermus aquaticus glycyl-tRNA synthetase glyS SW:SYG_THETH (P56206) (505 aa) fasta scores: E(): 0%2C 43.6%25 id in 512 aa. Contains Pfam match to entry PF00587 tRNA-synt_2b%2C tRNA synthetase class II (G%2C H%2C P%2C S and T). Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.;gbkey=CDS;gene=glyS;product=putative glycyl-tRNA synthase;protein_id=CAC30336.1;transl_table=11
AL450380.1	EMBL	sequence_feature	979090	980175	.	+	.	ID=id-glyS;Note=Pfam match to entry PF00587 tRNA-synt_2b%2C tRNA synthetase class II (G%2C H%2C P%2C S and T)%2C score 6.50%2C E-value 0.00073;gbkey=misc_feature;gene=glyS
AL450380.1	EMBL	sequence_feature	979402	979425	.	+	.	ID=id-glyS-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=glyS
AL450380.1	EMBL	sequence_feature	979426	979488	.	+	.	ID=id-glyS-3;Note=PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1;gbkey=misc_feature;gene=glyS
AL450380.1	EMBL	repeat_region	980403	981142	.	-	.	ID=id-AL450380.1:980403..981142;Note=740 bp repeat. 100%25 identical to region 3044255..3044994;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	981136	981417	.	-	.	ID=gene-ML0827;Name=ML0827;gbkey=Gene;gene=ML0827;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	981136	981417	.	-	0	ID=cds-ML0827;Parent=gene-ML0827;Note=Possible pseudogene of a Tn3-type element transposase;gbkey=CDS;gene=ML0827;product=putative transposase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	982489	983339	.	+	.	ID=gene-ML0828;Name=ML0828;gbkey=Gene;gene=ML0828;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	982489	983339	.	+	0	ID=cds-ML0828;Parent=gene-ML0828;Note=Possible pseudogene of M. tuberculosis PPE-family protein (Best blastx score 102);gbkey=CDS;gene=ML0828;product=PPE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	982996	983158	.	-	.	ID=id-AL450380.1:982996..983158;Note=163 bp repeat%2C 96%25 identical to region 754310..754472;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	983746	984267	.	+	.	ID=gene-plcB;Name=plcB;gbkey=Gene;gene=plcB;gene_biotype=pseudogene;gene_synonym=ML0829;pseudo=true
AL450380.1	EMBL	CDS	983746	984267	.	+	0	ID=cds-plcB;Parent=gene-plcB;Note=Possible pseudogene of M. tuberculosis plcA%2C B or C (Best blastx score 175);gbkey=CDS;gene=plcB;product=phospholipase C precursor (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	984296	986298	.	-	.	ID=gene-ML0830;Name=ML0830;gbkey=Gene;gene=ML0830;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	984296	986298	.	-	0	ID=cds-ML0830;Parent=gene-ML0830;Note=Possible pseudogene of M. tuberculosis orthologue Rv2345 (Best blastx score 503);gbkey=CDS;gene=ML0830;product=precursor of probable membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	984591	984626	.	+	.	ID=id-AL450380.1:984591..984626;Note=18 copies of dinucleotide repeat%2C TA;gbkey=repeat_region
AL450380.1	EMBL	gene	986474	987763	.	+	.	ID=gene-dgt;Name=dgt;gbkey=Gene;gene=dgt;gene_biotype=protein_coding;gene_synonym=ML0831
AL450380.1	EMBL	CDS	986474	987763	.	+	0	ID=cds-CAC30341.1;Parent=gene-dgt;Dbxref=GOA:Q9CCG3,InterPro:IPR003607,InterPro:IPR006261,InterPro:IPR006674,InterPro:IPR006675,InterPro:IPR023023,InterPro:IPR023293,InterPro:IPR026875,NCBI_GP:CAC30341.1;Name=CAC30341.1;Note=Similar to Mycobacterium tuberculosis deoxyguanosinetriphosphate triphosphohydrolase dgt or Rv2344c or MTCY98.13c SW:DGTP_MYCTU (P95240) (431 aa) fasta scores: E(): 0%2C 83.8%25 id in 421 aa and to many hypothetical deoxyguanosine hydrolases. Contains Pfam match to entry PF01966 HD%2C HD domain.;gbkey=CDS;gene=dgt;product=putative deoxyguanosine triphosphate hydrolase;protein_id=CAC30341.1;transl_table=11
AL450380.1	EMBL	sequence_feature	986699	987151	.	+	.	ID=id-dgt;Note=Pfam match to entry PF01966 HD%2C HD domain%2C score 6.80%2C E-value 0.048;gbkey=misc_feature;gene=dgt
AL450380.1	EMBL	pseudogene	987874	988327	.	+	.	ID=gene-ML0832;Name=ML0832;gbkey=Gene;gene=ML0832;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	987874	988327	.	+	0	ID=cds-ML0832;Parent=gene-ML0832;Note=Possible pseudogene similar to M. tuberculosis paralogue sodC (Best blastx score 163);gbkey=CDS;gene=ML0832;product=superoxide dismutase precursor (Cu-Zn) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	988458	990386	.	+	.	ID=gene-dnaG;Name=dnaG;gbkey=Gene;gene=dnaG;gene_biotype=protein_coding;gene_synonym=ML0833
AL450380.1	EMBL	CDS	988458	990386	.	+	0	ID=cds-CAC30343.1;Parent=gene-dnaG;Dbxref=GOA:Q9CCG2,InterPro:IPR002694,InterPro:IPR006171,InterPro:IPR006295,InterPro:IPR013173,InterPro:IPR013264,InterPro:IPR019475,NCBI_GP:CAC30343.1;Name=CAC30343.1;Note=EC_number%3D2.7.7.-%3B~Similar to Mycobacterium tuberculosis DNA primase SW:PRIM_MYCTU (P95239) (639 aa) fasta scores: E(): 0%2C 80.4%25 id in 642 aa%2C and to Mycobacterium smegmatis primase dnaG TR:O52200 (EMBL:AF027507) (636 aa) fasta scores: E(): 0%2C 76.2%25 id in 642 aa. Contains Pfam match to entry PF01751 Toprim%2C Toprim domain. Contains Pfam match to entry PF01807 zf-CHC2%2C CHC2 zinc finger.;gbkey=CDS;gene=dnaG;product=DNA primase;protein_id=CAC30343.1;transl_table=11
AL450380.1	EMBL	sequence_feature	988566	988736	.	+	.	ID=id-dnaG;Note=Pfam match to entry PF01807 zf-CHC2%2C CHC2 zinc finger%2C score 130.30%2C E-value 3.6e-35;gbkey=misc_feature;gene=dnaG
AL450380.1	EMBL	sequence_feature	989241	989501	.	+	.	ID=id-dnaG-2;Note=Pfam match to entry PF01751 Toprim%2C Toprim domain%2C score 65.00%2C E-value 1.6e-15;gbkey=misc_feature;gene=dnaG
AL450380.1	EMBL	gene	990401	990703	.	-	.	ID=gene-ML0834;Name=ML0834;gbkey=Gene;gene=ML0834;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	990401	990703	.	-	0	ID=cds-CAC30344.1;Parent=gene-ML0834;Dbxref=UniProtKB/TrEMBL:Q9CCG1,NCBI_GP:CAC30344.1;Name=CAC30344.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv2342 or MTCY98.11 TR:P95238 (EMBL:Z83860) (85 aa) fasta scores: E(): 3e-21%2C 76.9%25 id in 78 aa and shows weak similarity to Streptomyces coelicolor putative secreted protein SCC24.32 TR:CAB86126 (EMBL:AL163003) (108 aa) fasta scores: E(): 0.035%2C 30.5%25 id in 95 aa.;gbkey=CDS;gene=ML0834;product=conserved hypothetical protein;protein_id=CAC30344.1;transl_table=11
AL450380.1	EMBL	gene	990844	990916	.	+	.	ID=gene-asnT;Name=asnT;gbkey=Gene;gene=asnT;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	990844	990916	.	+	.	ID=rna-asnT;Parent=gene-asnT;Note=tRNA Asn anticodon GTT%2C Cove score 78.91;gbkey=tRNA;gene=asnT;product=tRNA-Asn
AL450380.1	EMBL	exon	990844	990916	.	+	.	ID=exon-asnT-1;Parent=rna-asnT;Note=tRNA Asn anticodon GTT%2C Cove score 78.91;gbkey=tRNA;gene=asnT;product=tRNA-Asn
AL450380.1	EMBL	pseudogene	990964	992727	.	-	.	ID=gene-mez;Name=mez;gbkey=Gene;gene=mez;gene_biotype=pseudogene;gene_synonym=ML0835;pseudo=true
AL450380.1	EMBL	CDS	990964	992727	.	-	0	ID=cds-mez;Parent=gene-mez;Note=Possible pseudogene of M. tuberculosis orthologue mez (Best blastx score 299);gbkey=CDS;gene=mez;product=probable malate oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	993461	993727	.	+	.	ID=gene-ML0836;Name=ML0836;gbkey=Gene;gene=ML0836;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	993461	993727	.	+	0	ID=cds-ML0836;Parent=gene-ML0836;Note=Possible pseudogene similar to bacterial hypothetical proteins e.g. Thermotoga maritima TM0911 TR:Q9X013 (EMBL:AE001755);gbkey=CDS;gene=ML0836;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	993882	994265	.	+	.	ID=gene-ML0837;Name=ML0837;gbkey=Gene;gene=ML0837;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	993882	994265	.	+	0	ID=cds-CAC30347.1;Parent=gene-ML0837;Dbxref=InterPro:IPR001303,UniProtKB/TrEMBL:Q9CCG0,NCBI_GP:CAC30347.1;Name=CAC30347.1;Note=Similar to part of Streptomyces coelicolor putative aldolase SCI8.29C TR:Q9RJ24 (EMBL:AL132644) (240 aa) fasta scores: E(): 0.001%2C 32.5%25 id in 120 aa.;gbkey=CDS;gene=ML0837;product=hypothetical protein;protein_id=CAC30347.1;transl_table=11
AL450380.1	EMBL	stem_loop	994929	994988	.	-	.	ID=id-AL450380.1:994929..994988;Note=60 bp palindrome;gbkey=stem_loop
AL450380.1	EMBL	gene	995670	996353	.	-	.	ID=gene-cysE;Name=cysE;gbkey=Gene;gene=cysE;gene_biotype=protein_coding;gene_synonym=ML0838
AL450380.1	EMBL	CDS	995670	996353	.	-	0	ID=cds-CAC30348.1;Parent=gene-cysE;Dbxref=GOA:Q7AQF4,InterPro:IPR001451,InterPro:IPR005881,InterPro:IPR010493,InterPro:IPR011004,InterPro:IPR018357,UniProtKB/TrEMBL:Q7AQF4,NCBI_GP:CAC30348.1;Name=CAC30348.1;Note=Similar to Mycobacterium tuberculosis putative serine acetyltransferase cysE or Rv2335 or MTCY98.0031C TR:P95231 (EMBL:Z83860) (229 aa) fasta scores: E(): 0%2C 76.4%25 id in 229 aa%2C and to Bacillus subtilis serine acetyltransferase cysE or cysA SW:CYSE_BACSU (Q06750) (217 aa) fasta scores: E(): 0%2C 47.1%25 id in 204 aa. Previously sequenced as TR:O32979 (EMBL:Z98741). Contains 4 Pfam matches to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats). Contains PS00101 Hexapeptide-repeat containing-transferases signature.;gbkey=CDS;gene=cysE;product=putative serine acetyltransferase;protein_id=CAC30348.1;transl_table=11
AL450380.1	EMBL	sequence_feature	995892	995978	.	-	.	ID=id-cysE;Note=PS00101 Hexapeptide-repeat containing-transferases signature;gbkey=misc_feature;gene=cysE
AL450380.1	EMBL	sequence_feature	995898	995951	.	-	.	ID=id-cysE-2;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 7.30%2C E-value 78;gbkey=misc_feature;gene=cysE
AL450380.1	EMBL	sequence_feature	995952	996005	.	-	.	ID=id-cysE-3;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 11.60%2C E-value 19;gbkey=misc_feature;gene=cysE
AL450380.1	EMBL	sequence_feature	996030	996083	.	-	.	ID=id-cysE-4;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 15.90%2C E-value 0.98;gbkey=misc_feature;gene=cysE
AL450380.1	EMBL	sequence_feature	996126	996179	.	-	.	ID=id-cysE-5;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 7.00%2C E-value 86;gbkey=misc_feature;gene=cysE
AL450380.1	EMBL	gene	996356	997288	.	-	.	ID=gene-cysK;Name=cysK;gbkey=Gene;gene=cysK;gene_biotype=protein_coding;gene_synonym=ML0839
AL450380.1	EMBL	CDS	996356	997288	.	-	0	ID=cds-CAC30349.1;Parent=gene-cysK;Dbxref=GOA:O32978,InterPro:IPR001216,InterPro:IPR001926,InterPro:IPR005856,InterPro:IPR005859,NCBI_GP:CAC30349.1;Name=CAC30349.1;Note=Similar to Mycobacterium tuberculosis cysteine synthase A cysK or Rv2334 or MTCY98.03 SW:CYSK_MYCTU (P95230) (310 aa) fasta scores: E(): 0%2C 85.8%25 id in 310 aa%2C and to Spinacia oleracea cysteine synthase%2C chloroplast precursor cysK SW:CYSL_SPIOL (P32260) (383 aa) fasta scores: E(): 0%2C 59.2%25 id in 309 aa. Previously sequenced as SW:CYSK_MYCLE (O32978). Contains Pfam match to entry PF00291 S_T_dehydratase%2C Pyridoxal-phosphate dependent enzyme. Contains PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site.%3B~Similar to ML2396;gbkey=CDS;gene=cysK;product=putative cysteine synthase;protein_id=CAC30349.1;transl_table=11
AL450380.1	EMBL	sequence_feature	996404	997270	.	-	.	ID=id-cysK;Note=Pfam match to entry PF00291 S_T_dehydratase%2C Pyridoxal-phosphate dependent enzyme%2C score 447.00%2C E-value 1.6e-130;gbkey=misc_feature;gene=cysK
AL450380.1	EMBL	sequence_feature	997136	997192	.	-	.	ID=id-cysK-2;Note=PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site;gbkey=misc_feature;gene=cysK
AL450380.1	EMBL	gene	997285	998589	.	-	.	ID=gene-ML0840;Name=ML0840;gbkey=Gene;gene=ML0840;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	997285	998589	.	-	0	ID=cds-CAC30350.1;Parent=gene-ML0840;Dbxref=InterPro:IPR023849,UniProtKB/TrEMBL:Q7AQF3,NCBI_GP:CAC30350.1;Name=CAC30350.1;Note=Unknown function. Previously sequenced as TR:O32977 (EMBL:Z98741).;gbkey=CDS;gene=ML0840;product=hypothetical protein;protein_id=CAC30350.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	997296	997302	.	-	.	ID=id-ML0840;Parent=gene-ML0840;Note=possible RBS;gbkey=regulatory;gene=ML0840;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	ribosome_entry_site	998600	998606	.	-	.	ID=id-AL450380.1:998600..998606;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	ribosome_entry_site	998962	998966	.	+	.	ID=id-AL450380.1:998962..998966;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	998972	999895	.	+	.	ID=gene-ML0841;Name=ML0841;gbkey=Gene;gene=ML0841;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	998972	999895	.	+	0	ID=cds-CAC30351.1;Parent=gene-ML0841;Dbxref=GOA:P46841,NCBI_GP:CAC30351.1;Name=CAC30351.1;Note=Similar to Mycobacterium paratuberculosis 35 kDa protein TR:Q9RAJ4 (EMBL:AJ250887) (307 aa) fasta scores: E(): 0%2C 92.2%25 id in 307 aa and to Mycobacterium avium major membrane protein I mmpI SW:MMP1_MYCAV (Q48899) (307 aa) fasta scores: E(): 0%2C 89.6%25 id in 308 aa. Previously sequenced as SW:MMP1_MYCLE (P46841).;gbkey=CDS;gene=ML0841;product=major membrane protein I;protein_id=CAC30351.1;transl_table=11
AL450380.1	EMBL	gene	1000551	1001786	.	+	.	ID=gene-ML0842;Name=ML0842;gbkey=Gene;gene=ML0842;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1000551	1001786	.	+	0	ID=cds-CAC31223.1;Parent=gene-ML0842;Dbxref=GOA:O32975,InterPro:IPR000192,InterPro:IPR010970,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,NCBI_GP:CAC31223.1;Name=CAC31223.1;Note=Similar to Mycobacterium tuberculosis hypothetical 44.6 kDa protein Rv1464 or MTV007.11 TR:O53155 (EMBL:AL021184) (417 aa) fasta scores: E(): 0%2C 43.6%25 id in 408 aa and to many other bacterial nifS-homologues%2C e.g. Bacillus subtilis YurW protein yurW TR:O32164 (EMBL:Z99120) (406 aa) fasta scores: E(): 0%2C 46.7%25 id in 405 aa. Previously sequenced as TR:O32975 (EMBL:Z98741). Contains Pfam match to entry PF00266 aminotran_5%2C Aminotransferases class-V.%3B~Similar to ML0117%2C ML0596 and ML1708;gbkey=CDS;gene=ML0842;product=conserved hypothetical protein;protein_id=CAC31223.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1000653	1001738	.	+	.	ID=id-ML0842;Note=Pfam match to entry PF00266 aminotran_5%2C Aminotransferases class-V%2C score 23.70%2C E-value 1.7e-08;gbkey=misc_feature;gene=ML0842
AL450380.1	EMBL	pseudogene	1001908	1002395	.	+	.	ID=gene-lppP;Name=lppP;gbkey=Gene;gene=lppP;gene_biotype=pseudogene;gene_synonym=ML0843;pseudo=true
AL450380.1	EMBL	CDS	1001908	1002395	.	+	0	ID=cds-lppP;Parent=gene-lppP;Note=Possible pseudogene of M. tuberculosis orthologue lppP (Best blastx score 294);gbkey=CDS;gene=lppP;product=lipoprotein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1002549	1002555	.	+	.	ID=id-AL450380.1:1002549..1002555;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1002559	1004112	.	+	.	ID=gene-narK;Name=narK;gbkey=Gene;gene=narK;gene_biotype=protein_coding;gene_synonym=ML0844
AL450380.1	EMBL	CDS	1002559	1004112	.	+	0	ID=cds-CAC31225.1;Parent=gene-narK;Dbxref=GOA:Q7AQF2,InterPro:IPR011701,InterPro:IPR016196,UniProtKB/TrEMBL:Q7AQF2,NCBI_GP:CAC31225.1;Name=CAC31225.1;Note=Similar to Mycobacterium tuberculosis putative nitrite extrusion protein narK1 or Rv2329c or MTCY3G12.05 TR:P71883 (EMBL:Z79702) (515 aa) fasta scores: E(): 0%2C 69.3%25 id in 488 aa and to Escherichia coli nitrite extrusion protein 2 narU SW:NARU_ECOLI (P37758%3B P77696) (462 aa) fasta scores: E(): 0%2C 36.6%25 id in 459 aa. There is a frameshift near the C-terminus relative to the M. tuberculosis homologue. Previously sequenced as TR:O32974 (EMBL:Z98741). Contains hydrophobic%2C probable membrane-spanning regions.;gbkey=CDS;gene=narK;product=putative nitrite extrusion protein;protein_id=CAC31225.1;transl_table=11
AL450380.1	EMBL	gene	1004100	1004681	.	-	.	ID=gene-ML0845;Name=ML0845;gbkey=Gene;gene=ML0845;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1004100	1004681	.	-	0	ID=cds-CAC31226.1;Parent=gene-ML0845;Dbxref=GOA:Q7AQF1,InterPro:IPR002655,InterPro:IPR009075,UniProtKB/TrEMBL:Q7AQF1,NCBI_GP:CAC31226.1;Name=CAC31226.1;Note=Unknown function. Similar to part of some acyl-CoA oxidases e.g. Arabidopsis thaliana acyl-CoA oxidase cx2 TR:O65201 (EMBL:AF057043) (692 aa) fasta scores: E(): 1.5e-06%2C 35.2%25 id in 125 aa. Previously sequenced as TR:O32973 (EMBL:Z98741) (193 aa) fasta scores: E(): 0%2C 99.5%25 id in 193 aa.;gbkey=CDS;gene=ML0845;product=hypothetical protein;protein_id=CAC31226.1;transl_table=11
AL450380.1	EMBL	pseudogene	1004959	1005480	.	-	.	ID=gene-ML0846;Name=ML0846;gbkey=Gene;gene=ML0846;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1004959	1005480	.	-	0	ID=cds-ML0846;Parent=gene-ML0846;Note=Possible pseudogene similar to M. tuberculosis paralogue Rv1747 (Best blastx score 127);gbkey=CDS;gene=ML0846;product=ABC transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1005522	1005848	.	-	.	ID=gene-ML0847;Name=ML0847;gbkey=Gene;gene=ML0847;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1005522	1005848	.	-	0	ID=cds-ML0847;Parent=gene-ML0847;Note=Possible pseudogene of M. tuberculosis orthologue Rv2327 (Best blastx score 184);gbkey=CDS;gene=ML0847;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1005906	1008080	.	+	.	ID=gene-ML0848;Name=ML0848;gbkey=Gene;gene=ML0848;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1005906	1008080	.	+	0	ID=cds-CAC31229.1;Parent=gene-ML0848;Dbxref=GOA:Q9CCF9,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CCF9,NCBI_GP:CAC31229.1;Name=CAC31229.1;Note=Similar to Mycobacterium tuberculosis hypothetical ABC transporter ATP-binding protein Rv2326c or MTCY3G12.08 SW:YN26_MYCTU (P71886) (697 aa) fasta scores: E(): 0%2C 76.9%25 id in 697 aa. Shares similar domains with many ABC-type transporters e.g. Streptomyces roseofulvus ATPase component of putative ABC transporter frnD TR:O68910 (EMBL:AF058302) (524 aa) fasta scores: E(): 8.4e-14%2C 31.5%25 id in 495 aa and Synechococcus sp. nitrate transport ATP-binding protein NrtD nrtD SW:NRTD_SYNP7 (P38046) (274 aa) fasta scores: E(): 1.6e-12%2C 34.8%25 id in 198 aa. Previously sequenced as TR:O32971 (EMBL:Z98741). Contains hydrophobic%2C possible membrane-spanning regions. Contains 2 Pfam matches to entry PF00005 ABC_tran%2C ABC transporter. Contains 2 x PS00017 ATP/GTP-binding site motif A (P-loop). Contains 2 x PS00211 ABC transporters family signature.;gbkey=CDS;gene=ML0848;product=ABC transporter;protein_id=CAC31229.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1006821	1007336	.	+	.	ID=id-ML0848;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 112.30%2C E-value 9e-30;gbkey=misc_feature;gene=ML0848
AL450380.1	EMBL	sequence_feature	1006842	1006865	.	+	.	ID=id-ML0848-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML0848
AL450380.1	EMBL	sequence_feature	1007109	1007153	.	+	.	ID=id-ML0848-3;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=ML0848
AL450380.1	EMBL	sequence_feature	1007508	1008038	.	+	.	ID=id-ML0848-4;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 125.00%2C E-value 1.4e-33;gbkey=misc_feature;gene=ML0848
AL450380.1	EMBL	sequence_feature	1007529	1007552	.	+	.	ID=id-ML0848-5;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML0848
AL450380.1	EMBL	sequence_feature	1007808	1007852	.	+	.	ID=id-ML0848-6;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=ML0848
AL450380.1	EMBL	gene	1008077	1008928	.	+	.	ID=gene-ML0849;Name=ML0849;gbkey=Gene;gene=ML0849;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1008077	1008928	.	+	0	ID=cds-CAC31230.1;Parent=gene-ML0849;Dbxref=InterPro:IPR003339,UniProtKB/TrEMBL:Q7AQF0,NCBI_GP:CAC31230.1;Name=CAC31230.1;Note=Similar to Mycobacterium tuberculosis hypothetical 30.0 kDa protein Rv2325c or MTCY3G12.09 SW:YN25_MYCTU (P71887) (282 aa) fasta scores: E(): 0%2C 77.3%25 id in 282 aa. Similar other bacterial hypothetical proteins e.g. to Bacillus halodurans YbaF protein ybaF TR:Q9Z9J1 (EMBL:AB017508) (265 aa) fasta scores: E(): 3.4e-10%2C 24.5%25 id in 249 aa. Previously sequenced as TR:O32970 (EMBL:Z98741).;gbkey=CDS;gene=ML0849;product=conserved hypothetical protein;protein_id=CAC31230.1;transl_table=11
AL450380.1	EMBL	repeat_region	1008997	1009859	.	-	.	ID=id-AL450380.1:1008997..1009859;Note=Dispersed repeat%2C RLEP%2C copy 10;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	1010010	1011174	.	+	.	ID=gene-ltp1;Name=ltp1;gbkey=Gene;gene=ltp1;gene_biotype=pseudogene;gene_synonym=ML0850;pseudo=true
AL450380.1	EMBL	CDS	1010010	1011174	.	+	0	ID=cds-ltp1;Parent=gene-ltp1;Note=Possible pseudogene of M. tuberculosis orthologue ltp1 (Best blastx score 347);gbkey=CDS;gene=ltp1;product=non-specific lipid transport protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1011353	1011963	.	-	.	ID=gene-sirR;Name=sirR;gbkey=Gene;gene=sirR;gene_biotype=pseudogene;gene_synonym=ML0851;pseudo=true
AL450380.1	EMBL	CDS	1011353	1011963	.	-	0	ID=cds-sirR;Parent=gene-sirR;Note=Possible pseudogene of M. tuberculosis orthologue sirR (Best blastx score 192);gbkey=CDS;gene=sirR;product=iron-dependent transcriptional repressor (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1012135	1013130	.	+	.	ID=gene-ribF;Name=ribF;gbkey=Gene;gene=ribF;gene_biotype=protein_coding;gene_synonym=ML0852
AL450380.1	EMBL	CDS	1012135	1013130	.	+	0	ID=cds-CAC31233.1;Parent=gene-ribF;Dbxref=GOA:Q7AQE9,InterPro:IPR002606,InterPro:IPR014729,InterPro:IPR015864,InterPro:IPR015865,InterPro:IPR023465,InterPro:IPR023468,UniProtKB/TrEMBL:Q7AQE9,NCBI_GP:CAC31233.1;Name=CAC31233.1;Note=Similar to Mycobacterium tuberculosis riboflavin kinase ribF or Rv2786c or MTV002.51C TR:O33328 (EMBL:AL008967) (331 aa) fasta scores: E(): 0%2C 87.5%25 id in 327 aa and to many others e.g. Corynebacterium ammoniagenes riboflavin biosynthesis protein RibF (includes riboflavin kinase) ribF SW:RIBF_CORAM (Q59263) (338 aa) fasta scores: E(): 0%2C 47.7%25 id in 321 aa. Previously sequenced as TR:O32968 (EMBL:Z98741). Contains Pfam match to entry PF01687 FAD_Synth%2C Riboflavin kinase / FAD synthetase.;gbkey=CDS;gene=ribF;product=putative riboflavin kinase;protein_id=CAC31233.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1012717	1013124	.	+	.	ID=id-ribF;Note=Pfam match to entry PF01687 FAD_Synth%2C Riboflavin kinase / FAD synthetase%2C score 250.80%2C E-value 1.8e-71;gbkey=misc_feature;gene=ribF
AL450380.1	EMBL	ribosome_entry_site	1013236	1013242	.	+	.	ID=id-AL450380.1:1013236..1013242;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1013248	1013517	.	+	.	ID=gene-rpsO;Name=rpsO;gbkey=Gene;gene=rpsO;gene_biotype=protein_coding;gene_synonym=ML0853
AL450380.1	EMBL	CDS	1013248	1013517	.	+	0	ID=cds-CAC31234.1;Parent=gene-rpsO;Dbxref=GOA:O32967,InterPro:IPR000589,InterPro:IPR005290,InterPro:IPR009068,NCBI_GP:CAC31234.1;Name=CAC31234.1;Note=Similar to Mycobacterium tuberculosis 30S ribosomal protein S15 rpsO or Rv2785c or MTV002.50C SW:RS15_MYCTU (O33327) (89 aa) fasta scores: E(): 1.1e-32%2C 92.1%25 id in 89 aa and to Bacillus stearothermophilus 30S ribosomal protein S15 rpsO SW:RS15_BACST (P05766) (88 aa) fasta scores: E(): 7.7e-22%2C 62.5%25 id in 88 aa. Previously sequenced as SW:RS15_MYCLE (O32967). Contains Pfam match to entry PF00312 Ribosomal_S15%2C Ribosomal protein S15. Contains PS00362 Ribosomal protein S15 signature.;gbkey=CDS;gene=rpsO;product=30S ribosomal protein S15;protein_id=CAC31234.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1013314	1013511	.	+	.	ID=id-rpsO;Note=Pfam match to entry PF00312 Ribosomal_S15%2C Ribosomal protein S15%2C score 102.30%2C E-value 1.6e-27;gbkey=misc_feature;gene=rpsO
AL450380.1	EMBL	sequence_feature	1013362	1013454	.	+	.	ID=id-rpsO-2;Note=PS00362 Ribosomal protein S15 signature;gbkey=misc_feature;gene=rpsO
AL450380.1	EMBL	gene	1013839	1016160	.	+	.	ID=gene-gpsI;Name=gpsI;gbkey=Gene;gene=gpsI;gene_biotype=protein_coding;gene_synonym=ML0854
AL450380.1	EMBL	CDS	1013839	1016160	.	+	0	ID=cds-CAC31235.1;Parent=gene-gpsI;Dbxref=GOA:Q9CCF8,InterPro:IPR001247,InterPro:IPR003029,InterPro:IPR004087,InterPro:IPR004088,InterPro:IPR012162,InterPro:IPR012340,InterPro:IPR014069,InterPro:IPR015847,InterPro:IPR015848,InterPro:IPR020568,InterPro:IPR022967,InterPro:IPR027408,NCBI_GP:CAC31235.1;Name=CAC31235.1;Note=Similar to Mycobacterium tuberculosis guanosine pentaphosphate synthetase / polyribonucleotide nucleotidyltransferase gpsI or Rv2783c or MTV002.48C TR:O33325 (EMBL:AL008967) (752 aa) fasta scores: E(): 0%2C 90.0%25 id in 757 aa%2C to Streptomyces antibioticus guanosine pentaphosphate synthetase gpsI TR:Q53597 (EMBL:U19858) (740 aa) fasta scores: E(): 0%2C 67.2%25 id in 751 aa and to Bacillus subtilis polyribonucleotide nucleotidyltransferase pnpA or comR SW:PNPA_BACSU (P50849) (704 aa) fasta scores: E(): 0%2C 45.0%25 id in 723 aa. Previously sequenced as TR:O32966 (EMBL:Z98741). Contains Pfam match to entry PF00013 KH-domain%2C KH domain. Contains 2 Pfam matches to entry PF01138 RNase_PH%2C 3' exoribonuclease family. Contains Pfam match to entry PF00575 S1%2C S1 RNA binding domain.;gbkey=CDS;gene=gpsI;product=putative polyribonucleotide phosphorylase / guanosine pentaphosphate synthetase;protein_id=CAC31235.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1013884	1014525	.	+	.	ID=id-gpsI;Note=Pfam match to entry PF01138 RNase_PH%2C 3' exoribonuclease family%2C score 157.30%2C E-value 2.7e-43;gbkey=misc_feature;gene=gpsI
AL450380.1	EMBL	sequence_feature	1014895	1015563	.	+	.	ID=id-gpsI-2;Note=Pfam match to entry PF01138 RNase_PH%2C 3' exoribonuclease family%2C score 286.90%2C E-value 2.6e-82;gbkey=misc_feature;gene=gpsI
AL450380.1	EMBL	sequence_feature	1015642	1015782	.	+	.	ID=id-gpsI-3;Note=Pfam match to entry PF00013 KH-domain%2C KH domain%2C score 38.10%2C E-value 3.4e-10;gbkey=misc_feature;gene=gpsI
AL450380.1	EMBL	sequence_feature	1015831	1016043	.	+	.	ID=id-gpsI-4;Note=Pfam match to entry PF00575 S1%2C S1 RNA binding domain%2C score 50.40%2C E-value 2.7e-12;gbkey=misc_feature;gene=gpsI
AL450380.1	EMBL	gene	1016249	1017523	.	+	.	ID=gene-pepR;Name=pepR;gbkey=Gene;gene=pepR;gene_biotype=protein_coding;gene_synonym=ML0855
AL450380.1	EMBL	CDS	1016249	1017523	.	+	0	ID=cds-CAC31236.1;Parent=gene-pepR;Dbxref=GOA:O32965,InterPro:IPR001431,InterPro:IPR007863,InterPro:IPR011237,InterPro:IPR011249,InterPro:IPR011765,NCBI_GP:CAC31236.1;Name=CAC31236.1;Note=EC_number%3D3.4.99.-%3B~Similar to Mycobacterium tuberculosis hypothetical zinc protease Rv2782c or MTV002.47C SW:YR82_MYCTU (O33324) (438 aa) fasta scores: E(): 0%2C 84.3%25 id in 421 aa and to others%2C both bacterial and eukaryotic e.g. Homo sapiens mitochondrial processing peptidase beta subunit precursor pmpcB or mppB SW:MPPB_HUMAN (O75439) (489 aa) fasta scores: E(): 0%2C 30.6%25 id in 434 aa. Previously sequenced as SW:YR82_MYCLE (O32965). Contains Pfam match to entry PF00675 Peptidase_M16%2C Insulinase (Peptidase family M16). Contains PS00143 Insulinase family%2C zinc-binding region signature.;gbkey=CDS;gene=pepR;product=putative zinc protease;protein_id=CAC31236.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1016276	1016725	.	+	.	ID=id-pepR;Note=Pfam match to entry PF00675 Peptidase_M16%2C Insulinase (Peptidase family M16)%2C score 171.90%2C E-value 1e-47;gbkey=misc_feature;gene=pepR
AL450380.1	EMBL	sequence_feature	1016342	1016413	.	+	.	ID=id-pepR-2;Note=PS00143 Insulinase family%2C zinc-binding region signature;gbkey=misc_feature;gene=pepR
AL450380.1	EMBL	pseudogene	1017528	1018537	.	+	.	ID=gene-ML0856;Name=ML0856;gbkey=Gene;gene=ML0856;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1017528	1018537	.	+	0	ID=cds-ML0856;Parent=gene-ML0856;Note=Possible pseudogene of M. tuberculosis orthologue Rv2781c (Best blastx score 337);gbkey=CDS;gene=ML0856;product=probable oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	1019002	1019602	.	+	.	ID=id-AL450380.1:1019002..1019602;Note=Dispersed repeat%2C RLEP%2C copy 11;gbkey=repeat_region
AL450380.1	EMBL	gene	1019690	1020442	.	-	.	ID=gene-ML0857;Name=ML0857;gbkey=Gene;gene=ML0857;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1019690	1020442	.	-	0	ID=cds-CAC31238.1;Parent=gene-ML0857;Dbxref=InterPro:IPR025445,UniProtKB/TrEMBL:Q7AQE8,NCBI_GP:CAC31238.1;Name=CAC31238.1;Note=Similar to Mycobacterium tuberculosis hypothetical 26.9 kDa protein Rv2219 or MTCY190.30 SW:YM19_MYCTU (Q10405) (250 aa) fasta scores: E(): 0%2C 80.8%25 id in 250 aa. Similar to Streptomyces coelicolor putative integral membrane protein SC3H12.04 TR:CAB90843 (EMBL:AL355740) (234 aa) fasta scores: E(): 1.2e-26%2C 39.6%25 id in 230 aa and to Streptomyces coelicolor putative integral membrane protein SC5F7.05 TR:Q9S2P0 (EMBL:AL096872) (234 aa) fasta scores: E(): 1.2e-26%2C 39.6%25 id in 230 aa. Previously sequenced as TR:O32963 (EMBL:Z98741). Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML0857;product=putative membrane protein;protein_id=CAC31238.1;transl_table=11
AL450380.1	EMBL	gene	1020469	1021413	.	-	.	ID=gene-lipA;Name=lipA;gbkey=Gene;gene=lipA;gene_biotype=protein_coding;gene_synonym=ML0858
AL450380.1	EMBL	CDS	1020469	1021413	.	-	0	ID=cds-CAC31239.1;Parent=gene-lipA;Dbxref=GOA:O32962,InterPro:IPR003698,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR013785,NCBI_GP:CAC31239.1;Name=CAC31239.1;Note=Similar to Mycobacterium tuberculosis lipoic acid synthetase lipA or Rv2218 or MTCY190.29 SW:LIPA_MYCTU (Q10380) (311 aa) fasta scores: E(): 0%2C 86.5%25 id in 310 aa. Similar to many e.g. Escherichia coli lipoic acid synthetase lipA or lip SW:LIPA_ECOLI (P25845%3B P77595) (321 aa) fasta scores: E(): 0%2C 42.5%25 id in 294 aa. Previously sequenced as SW:LIPA_MYCLE (O32962).;gbkey=CDS;gene=lipA;product=putative lipoic acid synthetase;protein_id=CAC31239.1;transl_table=11
AL450380.1	EMBL	gene	1021410	1022117	.	-	.	ID=gene-lipB;Name=lipB;gbkey=Gene;gene=lipB;gene_biotype=protein_coding;gene_synonym=ML0859
AL450380.1	EMBL	CDS	1021410	1022117	.	-	0	ID=cds-CAC31240.1;Parent=gene-lipB;Dbxref=GOA:O32961,InterPro:IPR000544,InterPro:IPR004143,InterPro:IPR020605,NCBI_GP:CAC31240.1;Name=CAC31240.1;Note=EC_number%3D6.-.-.-%3B~Similar to Mycobacterium tuberculosis lipoate-protein ligase B lipB or Rv2217 or MTCY190.28 SW:LIPB_MYCTU (Q10404) (230 aa) fasta scores: E(): 0%2C 78.4%25 id in 218 aa. Similar to Escherichia coli lipoate-protein ligase B lipB SW:LIPB_ECOLI (P30976) (191 aa) blastp score: 84.1 bits%2C 55%25 id in 163 aa. Previously sequenced as SW:LIPB_MYCLE (O32961). Contains Pfam match to entry PF02111 Lipoate_B%2C Lipoate-protein ligase B. Contains PS01313 Lipoate-protein ligase B signature.;gbkey=CDS;gene=lipB;product=putative lipoate-protein ligase B;protein_id=CAC31240.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1021572	1022021	.	-	.	ID=id-lipB;Note=Pfam match to entry PF02111 Lipoate_B%2C Lipoate-protein ligase B%2C score 323.90%2C E-value 2.5e-128;gbkey=misc_feature;gene=lipB
AL450380.1	EMBL	sequence_feature	1021839	1021886	.	-	.	ID=id-lipB-2;Note=PS01313 Lipoate-protein ligase B signature;gbkey=misc_feature;gene=lipB
AL450380.1	EMBL	gene	1022182	1023105	.	-	.	ID=gene-ML0860;Name=ML0860;gbkey=Gene;gene=ML0860;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1022182	1023105	.	-	0	ID=cds-CAC31241.1;Parent=gene-ML0860;Dbxref=GOA:O32960,InterPro:IPR001509,InterPro:IPR010099,InterPro:IPR013549,InterPro:IPR016040,NCBI_GP:CAC31241.1;Name=CAC31241.1;Note=Similar to Mycobacterium tuberculosis hypothetical 31.7 kDa protein Rv2216 or MTCY190.27 SW:YM16_MYCTU (Q10403) (301 aa) fasta scores: E(): 0%2C 84.2%25 id in 297 aa. Similar to many hypothetical proteins from both bacteria and eukaryotes e.g. to Drosophila melanogaster CG8768 TR:Q9V6F9 (EMBL:AE003821) (297 aa) fasta scores: E(): 6.3e-26%2C 31.3%25 id in 304 aa. Previously sequenced as SW:YM16_MYCLE (O32960).;gbkey=CDS;gene=ML0860;product=conserved hypothetical protein;protein_id=CAC31241.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1023117	1023122	.	-	.	ID=id-AL450380.1:1023117..1023122;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1023121	1024713	.	-	.	ID=gene-ML0861;Name=ML0861;gbkey=Gene;gene=ML0861;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1023121	1024713	.	-	0	ID=cds-CAC31242.1;Parent=gene-ML0861;Dbxref=GOA:Q7AQE7,InterPro:IPR000089,InterPro:IPR001078,InterPro:IPR003016,InterPro:IPR004167,InterPro:IPR011053,InterPro:IPR014276,InterPro:IPR023213,UniProtKB/TrEMBL:Q7AQE7,NCBI_GP:CAC31242.1;Name=CAC31242.1;Note=Similar to Mycobacterium tuberculosis dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex sucB or Rv2215 or MTCY190.26 SW:ODO2_MYCTU (Q10381) (553 aa) fasta scores: E(): 0%2C 81.8%25 id in 555 aa. Similar to Streptomyces seoulensis dihydrolipoamide acetyltransferase pdhB TR:Q9Z6I4 (EMBL:AF047034) (612 aa) fasta scores: E(): 0%2C 51.6%25 id in 614 aa and to many succinyltransferases e.g. Escherichia coli dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex sucB SW:ODO2_ECOLI (P07016) (404 aa) fasta scores: E(): 0%2C 38.4%25 id in 409 aa. Previously sequenced as TR:O32959 (EMBL:Z98741. Contains 2 Pfam matches to entry PF00364 biotin_lipoyl%2C Biotin-requiring enzymes. Contains Pfam match to entry PF00198 2-oxoacid_dh%2C 2-oxo acid dehydrogenases acyltransferase (catalytic domain). Contains 2 x PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.;gbkey=CDS;gene=ML0861;product=putative dihydrolipoamide acyltransferase;protein_id=CAC31242.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1023139	1023810	.	-	.	ID=id-ML0861;Note=Pfam match to entry PF00198 2-oxoacid_dh%2C 2-oxo acid dehydrogenases acyltransferase (catalytic domain)%2C score 253.30%2C E-value 3.4e-72;gbkey=misc_feature;gene=ML0861
AL450380.1	EMBL	sequence_feature	1024138	1024359	.	-	.	ID=id-ML0861-2;Note=Pfam match to entry PF00364 biotin_lipoyl%2C Biotin-requiring enzymes%2C score 106.40%2C E-value 5.6e-28;gbkey=misc_feature;gene=ML0861
AL450380.1	EMBL	sequence_feature	1024198	1024287	.	-	.	ID=id-ML0861-3;Note=PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site;gbkey=misc_feature;gene=ML0861
AL450380.1	EMBL	sequence_feature	1024486	1024707	.	-	.	ID=id-ML0861-4;Note=Pfam match to entry PF00364 biotin_lipoyl%2C Biotin-requiring enzymes%2C score 110.00%2C E-value 4.6e-29;gbkey=misc_feature;gene=ML0861
AL450380.1	EMBL	sequence_feature	1024546	1024635	.	-	.	ID=id-ML0861-5;Note=PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site;gbkey=misc_feature;gene=ML0861
AL450380.1	EMBL	ribosome_entry_site	1024723	1024727	.	-	.	ID=id-AL450380.1:1024723..1024727;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	ribosome_entry_site	1024944	1024949	.	+	.	ID=id-AL450380.1:1024944..1024949;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1024953	1026743	.	+	.	ID=gene-ephD;Name=ephD;gbkey=Gene;gene=ephD;gene_biotype=protein_coding;gene_synonym=ML0862
AL450380.1	EMBL	CDS	1024953	1026743	.	+	0	ID=cds-CAC31243.1;Parent=gene-ephD;Dbxref=GOA:Q7AQE6,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,InterPro:IPR029058,UniProtKB/TrEMBL:Q7AQE6,NCBI_GP:CAC31243.1;Name=CAC31243.1;Note=Similar to Mycobacterium tuberculosis probable oxidoreductase ephD or Rv2214c or MTCY190.25C SW:EPHD_MYCTU (Q10402) (592 aa) fasta scores: E(): 0%2C 80.4%25 id in 596 aa. Similar to many putative oxidorecuctases e.g. Streptomyces coelicolor putative oxidoreductase SCD78.21C TR:Q9ZBX8 (EMBL:AL034355) (585 aa) fasta scores: E(): 0%2C 42.4%25 id in 582 aa. C-terminal half is similar to Pseudomonas paucimobilis C alpha-dehydrogenase ligD SW:LIGD_PSEPA (Q01198) (305 aa) fasta scores: E(): 1.1e-15%2C 26.8%25 id in 269 aa. Previously sequenced as TR:O32958 (EMBL:Z98741). Contains Pfam match to entry PF00561 abhydrolase%2C alpha/beta hydrolase fold. Contains Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase. Contains PS00061 Short-chain dehydrogenases/reductases family signature.;gbkey=CDS;gene=ephD;product=putative oxidoreductase;protein_id=CAC31243.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1025130	1025858	.	+	.	ID=id-ephD;Note=Pfam match to entry PF00561 abhydrolase%2C alpha/beta hydrolase fold%2C score 110.40%2C E-value 3.4e-29;gbkey=misc_feature;gene=ephD
AL450380.1	EMBL	sequence_feature	1025937	1026494	.	+	.	ID=id-ephD-2;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 191.70%2C E-value 1.2e-53;gbkey=misc_feature;gene=ephD
AL450380.1	EMBL	sequence_feature	1026345	1026431	.	+	.	ID=id-ephD-3;Note=PS00061 Short-chain dehydrogenases/reductases family signature;gbkey=misc_feature;gene=ephD
AL450380.1	EMBL	gene	1026901	1027215	.	+	.	ID=gene-ML0863;Name=ML0863;gbkey=Gene;gene=ML0863;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1026901	1027215	.	+	0	ID=cds-CAC31244.1;Parent=gene-ML0863;Dbxref=UniProtKB/TrEMBL:Q7AQE5,NCBI_GP:CAC31244.1;Name=CAC31244.1;Note=Unknown function. Previously sequenced as TR:O32957 (EMBL:Z98741).;gbkey=CDS;gene=ML0863;product=hypothetical protein;protein_id=CAC31244.1;transl_table=11
AL450380.1	EMBL	gene	1027286	1028860	.	-	.	ID=gene-pepA;Name=pepA;gbkey=Gene;gene=pepA;gene_biotype=protein_coding;gene_synonym=ML0864
AL450380.1	EMBL	CDS	1027286	1028860	.	-	0	ID=cds-CAC31245.1;Parent=gene-pepA;Dbxref=GOA:O32956,InterPro:IPR000819,InterPro:IPR008283,InterPro:IPR011356,InterPro:IPR023042,NCBI_GP:CAC31245.1;Name=CAC31245.1;Note=Similar to Mycobacterium tuberculosis probable cytosol aminopeptidase pepA or pepB or Rv2213 or MTCY190.24 SW:AMPA_MYCTU (Q10401) (515 aa) fasta scores: E(): 0%2C 83.0%25 id in 522 aa. Similar to many e.g. Rickettsia prowazekii cytosol aminopeptidase pepA or rp142 SW:AMPA_RICPR (P27888) (500 aa) fasta scores: E(): 0%2C 39.1%25 id in 384 aa. Previously sequenced as TR:O32956 (EMBL:Z98741). Contains Pfam match to entry PF00883 Peptidase_M17%2C Cytosol aminopeptidase family. Contains PS00631 Cytosol aminopeptidase signature.;gbkey=CDS;gene=pepA;product=putative aminopeptidase;protein_id=CAC31245.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1027406	1028644	.	-	.	ID=id-pepA;Note=Pfam match to entry PF00883 Peptidase_M17%2C Cytosol aminopeptidase family%2C score 721.10%2C E-value 5.2e-213;gbkey=misc_feature;gene=pepA
AL450380.1	EMBL	sequence_feature	1027736	1027759	.	-	.	ID=id-pepA-2;Note=PS00631 Cytosol aminopeptidase signature;gbkey=misc_feature;gene=pepA
AL450380.1	EMBL	gene	1029021	1030124	.	+	.	ID=gene-gcvT;Name=gcvT;gbkey=Gene;gene=gcvT;gene_biotype=protein_coding;gene_synonym=ML0865
AL450380.1	EMBL	CDS	1029021	1030124	.	+	0	ID=cds-CAC31246.1;Parent=gene-gcvT;Dbxref=GOA:O32955,InterPro:IPR006222,InterPro:IPR006223,InterPro:IPR013977,InterPro:IPR022903,InterPro:IPR027266,InterPro:IPR028896,InterPro:IPR029043,NCBI_GP:CAC31246.1;Name=CAC31246.1;Note=Similar to Mycobacterium tuberculosis probable aminomethyltransferase gcvT or Rv2211c or MTCY190.22 SW:GCST_MYCTU (Q10376) (379 aa) fasta scores: E(): 0%2C 84.7%25 id in 367 aa. Similar to many e.g. Escherichia coli aminomethyltransferase gcvT SW:GCST_ECOLI (P27248) (363 aa) fasta scores: E(): 0%2C 39.0%25 id in 364 aa. Previously sequenced as TR:O32955 (EMBL:Z98741). Contains Pfam match to entry PF01571 GCV_T%2C Glycine cleavage T-protein (aminomethyl transferase).;gbkey=CDS;gene=gcvT;product=putative aminomethyltransferase;protein_id=CAC31246.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1029171	1030112	.	+	.	ID=id-gcvT;Note=Pfam match to entry PF01571 GCV_T%2C Glycine cleavage T-protein (aminomethyl transferase)%2C score 500.30%2C E-value 1.5e-146;gbkey=misc_feature;gene=gcvT
AL450380.1	EMBL	gene	1030181	1031287	.	+	.	ID=gene-ilvE;Name=ilvE;gbkey=Gene;gene=ilvE;gene_biotype=protein_coding;gene_synonym=ML0866
AL450380.1	EMBL	CDS	1030181	1031287	.	+	0	ID=cds-CAC31247.1;Parent=gene-ilvE;Dbxref=GOA:O32954,InterPro:IPR001544,InterPro:IPR005786,InterPro:IPR018300,NCBI_GP:CAC31247.1;Name=CAC31247.1;Note=Similar to Mycobacterium tuberculosis probable branched-chain amino acid aminotransferase ilvE or Rv2210c or MTCY190.21C SW:ILVE_MYCTU (Q10399) (368 aa) fasta scores: E(): 0%2C 87.2%25 id in 368 aa. Similar to many e.g. Mus musculus branched-chain amino acid aminotransferase (cytosolic) bcat1 or eca39 SW:BCAT_MOUSE (P24288) (386 aa) fasta scores: E(): 0%2C 41.0%25 id in 329 aa. Previously sequenced as SW:ILVE_MYCLE (O32954). Contains Pfam match to entry PF01063 aminotran_4%2C Aminotransferase class IV. Contains PS00770 Aminotransferases class-IV signature.;gbkey=CDS;gene=ilvE;product=putative branched-chain-amino-acid transaminase;protein_id=CAC31247.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1030334	1031230	.	+	.	ID=id-ilvE;Note=Pfam match to entry PF01063 aminotran_4%2C Aminotransferase class IV%2C score 493.50%2C E-value 1.6e-144;gbkey=misc_feature;gene=ilvE
AL450380.1	EMBL	sequence_feature	1030898	1030999	.	+	.	ID=id-ilvE-2;Note=PS00770 Aminotransferases class-IV signature;gbkey=misc_feature;gene=ilvE
AL450380.1	EMBL	pseudogene	1031317	1032059	.	-	.	ID=gene-cobS;Name=cobS;gbkey=Gene;gene=cobS;gene_biotype=pseudogene;gene_synonym=ML0867;pseudo=true
AL450380.1	EMBL	CDS	1031317	1032059	.	-	0	ID=cds-cobS;Parent=gene-cobS;Note=Possible pseudogene of M. tuberculosis orthologue cobS (Best blastx score 348);gbkey=CDS;gene=cobS;product=cobalamin (5'-phosphate) synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1032056	1033111	.	-	.	ID=gene-cobT;Name=cobT;gbkey=Gene;gene=cobT;gene_biotype=protein_coding;gene_synonym=ML0868
AL450380.1	EMBL	CDS	1032056	1033111	.	-	0	ID=cds-CAC31249.1;Parent=gene-cobT;Dbxref=GOA:O32953,InterPro:IPR003200,InterPro:IPR017846,InterPro:IPR023195,NCBI_GP:CAC31249.1;Name=CAC31249.1;Note=Similar to Mycobacterium tuberculosis putative nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase cobT or Rv2207 or MTCY190.18 SW:COBT_MYCTU (Q10396) (361 aa) fasta scores: E(): 0%2C 81.4%25 id in 355 aa. Similar to many e.g. Salmonella typhimurium nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase cobT SW:COBT_SALTY (Q05603) (356 aa) fasta scores: E(): 5.9e-32%2C 34.1%25 id in 340 aa. Previously sequenced as :O32953 (EMBL:Z98741).;gbkey=CDS;gene=cobT;product=putative nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase;protein_id=CAC31249.1;transl_table=11
AL450380.1	EMBL	gene	1033201	1033575	.	-	.	ID=gene-ML0869;Name=ML0869;gbkey=Gene;gene=ML0869;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1033201	1033575	.	-	0	ID=cds-CAC31250.1;Parent=gene-ML0869;Dbxref=GOA:Q9CCF6,InterPro:IPR021403,NCBI_GP:CAC31250.1;Name=CAC31250.1;Note=Similar to Mycobacterium tuberculosis hypothetical 14.0 kDa protein Rv2206 or MTCY190.17 SW:YM06_MYCTU (Q10395) (124 aa) fasta scores: E(): 0%2C 76.6%25 id in 124 aa and to part of Streptomyces coelicolor putative integral membrane protein SC5F7.32 TR:Q9S2R7 (EMBL:AL096872) (251 aa) fasta scores: E(): 3.5e-14%2C 34.7%25 id in 219 aa. Previously sequenced as TR:O32952 (EMBL:Z98741).;gbkey=CDS;gene=ML0869;product=conserved hypothetical protein;protein_id=CAC31250.1;transl_table=11
AL450380.1	EMBL	pseudogene	1033725	1035170	.	+	.	ID=gene-ML0870;Name=ML0870;gbkey=Gene;gene=ML0870;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1033725	1035170	.	+	0	ID=cds-ML0870;Parent=gene-ML0870;Note=Possible pseudogene of M. tuberculosis orthologue Rv2205c (Best blastx score 131);gbkey=CDS;gene=ML0870;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1035214	1035218	.	+	.	ID=id-AL450380.1:1035214..1035218;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1035224	1035580	.	+	.	ID=gene-ML0871;Name=ML0871;gbkey=Gene;gene=ML0871;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1035224	1035580	.	+	0	ID=cds-CAC31252.1;Parent=gene-ML0871;Dbxref=GOA:Q9CCF5,InterPro:IPR000361,InterPro:IPR016092,InterPro:IPR017870,UniProtKB/TrEMBL:Q9CCF5,NCBI_GP:CAC31252.1;Name=CAC31252.1;Note=Similar to Mycobacterium tuberculosis hypothetical 12.5 kDa protein Rv2204c or MTCY190.15C SW:YM04_MYCTU (Q10393) (118 aa) fasta scores: E(): 0%2C 92.4%25 id in 118 aa. Similar to many hypothetical proteins e.g. Streptomyces coelicolor hypothetical 12.4 kDa protein SC6G10.34C TR:Q9X819 (EMBL:AL049497) (118 aa) fasta scores: E(): 0%2C 73.7%25 id in 118 aa. Contains Pfam match to entry PF01521 HesB-like%2C HesB-like domain. Contains PS01152 Hypothetical hesB/yadR/yfhF family signature.;gbkey=CDS;gene=ML0871;product=conserved hypothetical protein;protein_id=CAC31252.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1035260	1035577	.	+	.	ID=id-ML0871;Note=Pfam match to entry PF01521 HesB-like%2C HesB-like domain%2C score 182.00%2C E-value 9.4e-51;gbkey=misc_feature;gene=ML0871
AL450380.1	EMBL	sequence_feature	1035521	1035574	.	+	.	ID=id-ML0871-2;Note=PS01152 Hypothetical hesB/yadR/yfhF family signature;gbkey=misc_feature;gene=ML0871
AL450380.1	EMBL	gene	1035615	1036130	.	-	.	ID=gene-ML0872;Name=ML0872;gbkey=Gene;gene=ML0872;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1035615	1036130	.	-	0	ID=cds-CAC31253.1;Parent=gene-ML0872;Dbxref=UniProtKB/TrEMBL:Q9CCF4,NCBI_GP:CAC31253.1;Name=CAC31253.1;Note=Similar to Mycobacterium tuberculosis hypothetical 24.4 kDa protein Rv2203 or MYCY190.14 SW:YM03_MYCTU (Q10392) (230 aa) fasta scores: E(): 0%2C 61.7%25 id in 230 aa. Contains hydrophobic%2C possible membrane-spanning region.;gbkey=CDS;gene=ML0872;product=putative membrane protein;protein_id=CAC31253.1;transl_table=11
AL450380.1	EMBL	gene	1036449	1037423	.	+	.	ID=gene-ML0873;Name=ML0873;gbkey=Gene;gene=ML0873;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1036449	1037423	.	+	0	ID=cds-CAC31254.1;Parent=gene-ML0873;Dbxref=GOA:Q9CCF3,InterPro:IPR002173,InterPro:IPR011611,InterPro:IPR029056,UniProtKB/TrEMBL:Q9CCF3,NCBI_GP:CAC31254.1;Name=CAC31254.1;Note=Similar to Mycobacterium tuberculosis hypothetical sugar kinase Rv2202c or MTCY190.13C SW:YM02_MYCTU (Q10391) (324 aa) fasta scores: E(): 0%2C 83.3%25 id in 324 aa%2C and to Streptomyces coelicolor putative kinase SC6G10.31C TR:Q9X816 (EMBL:AL049497) (338 aa) fasta scores: E(): 0%2C 58.9%25 id in 319 aa. Shows weak similarity to known kinases e.g. Bacillus subtilis ribokinase rbsK SW:RBSK_BACSU (P36945%3B P96733) (293 aa) fasta scores: E(): 1.2e-07%2C 26.1%25 id in 283 aa. Contains Pfam match to entry PF00294 pfkB%2C pfkB family carbohydrate kinase. Contains PS00583 pfkB family of carbohydrate kinases signature 1.;gbkey=CDS;gene=ML0873;product=putative carbohydrate kinase;protein_id=CAC31254.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1036587	1036670	.	+	.	ID=id-ML0873;Note=Pfam match to entry PF00294 pfkB%2C pfkB family carbohydrate kinase%2C score 20.30%2C E-value 1.9e-05;gbkey=misc_feature;gene=ML0873
AL450380.1	EMBL	sequence_feature	1036587	1036661	.	+	.	ID=id-ML0873-2;Note=PS00583 pfkB family of carbohydrate kinases signature 1;gbkey=misc_feature;gene=ML0873
AL450380.1	EMBL	gene	1037606	1039639	.	-	.	ID=gene-asnB;Name=asnB;gbkey=Gene;gene=asnB;gene_biotype=protein_coding;gene_synonym=ML0874
AL450380.1	EMBL	CDS	1037606	1039639	.	-	0	ID=cds-CAC31255.1;Parent=gene-asnB;Dbxref=GOA:Q9CCF2,InterPro:IPR000583,InterPro:IPR001962,InterPro:IPR006426,InterPro:IPR014729,InterPro:IPR017932,InterPro:IPR029055,UniProtKB/TrEMBL:Q9CCF2,NCBI_GP:CAC31255.1;Name=CAC31255.1;Note=Similar to Mycobacterium tuberculosis putative asparagine synthetase [glutamine-hydrolyzing] Rv2201 or mtcy190.12 SW:ASNH_MYCTU (Q10374) (652 aa) fasta scores: E(): 0%2C 83.3%25 id in 659 aa and to Bacillus subtilis asparagine synthetase [glutamine-hydrolyzing] 1 asnB or asn SW:ASNB_BACSU (P54420%3B O34902) (632 aa) fasta scores: E(): 0%2C 49.0%25 id in 614 aa. Contains Pfam match to entry PF00310 GATase_2%2C Glutamine amidotransferases class-II. Contains Pfam match to entry PF00733 Asn_synthase%2C Asparagine synthase.;gbkey=CDS;gene=asnB;product=putative asparagine synthetase;protein_id=CAC31255.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1037657	1038898	.	-	.	ID=id-asnB;Note=Pfam match to entry PF00733 Asn_synthase%2C Asparagine synthase%2C score -160.90%2C E-value 2.9e-07;gbkey=misc_feature;gene=asnB
AL450380.1	EMBL	sequence_feature	1039070	1039417	.	-	.	ID=id-asnB-2;Note=Pfam match to entry PF00310 GATase_2%2C Glutamine amidotransferases class-II%2C score 56.70%2C E-value 1e-18;gbkey=misc_feature;gene=asnB
AL450380.1	EMBL	ribosome_entry_site	1039769	1039774	.	+	.	ID=id-AL450380.1:1039769..1039774;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1039782	1040843	.	+	.	ID=gene-ctaC;Name=ctaC;gbkey=Gene;gene=ctaC;gene_biotype=protein_coding;gene_synonym=ML0875
AL450380.1	EMBL	CDS	1039782	1040843	.	+	0	ID=cds-CAC31256.1;Parent=gene-ctaC;Dbxref=GOA:Q9CCF1,InterPro:IPR001505,InterPro:IPR002429,InterPro:IPR008972,InterPro:IPR011759,NCBI_GP:CAC31256.1;Name=CAC31256.1;Note=Similar to Mycobacterium tuberculosis probable cytochrome C oxidase polypeptide II precursor ctaC or Rv2200c or MTCY190.11C SW:COX2_MYCTU (Q10375) (363 aa) fasta scores: E(): 0%2C 85.3%25 id in 340 aa. Shows weak similarity to many cytochrome oxidases e.g. to part of Acanthamoeba castellanii cytochrome C oxidase polypeptide I+II cox1/2 SW:COX1_ACACA (Q37370) (873 aa) fasta scores: E(): 7.1e-10%2C 28.5%25 id in 221 aa. Contains hydrophobic%2C probable membrane-spanning regions. Contains Pfam match to entry PF00116 COX2%2C Cytochrome C oxidase subunit II. Contains PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature.;gbkey=CDS;gene=ctaC;product=putative cytochrome C oxidase chain II;protein_id=CAC31256.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1040460	1040720	.	+	.	ID=id-ctaC;Note=Pfam match to entry PF00116 COX2%2C Cytochrome C oxidase subunit II%2C score 39.60%2C E-value 7.8e-10;gbkey=misc_feature;gene=ctaC
AL450380.1	EMBL	sequence_feature	1040511	1040675	.	+	.	ID=id-ctaC-2;Note=PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature;gbkey=misc_feature;gene=ctaC
AL450380.1	EMBL	gene	1040896	1041315	.	+	.	ID=gene-ML0876;Name=ML0876;gbkey=Gene;gene=ML0876;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1040896	1041315	.	+	0	ID=cds-CAC31257.1;Parent=gene-ML0876;Dbxref=GOA:Q9CCF0,InterPro:IPR021050,NCBI_GP:CAC31257.1;Name=CAC31257.1;Note=Similar to Mycobacterium tuberculosis hypothetical 14.9 kDa protein Rv2199c or MTCY190.10C SW:YL99_MYCTU (Q10406) (139 aa) fasta scores: E(): 0%2C 91.4%25 id in 139 aa and to Streptomyces coelicolor hypothetical proteins e.g. putative integral membrane protein SC6G10.27C TR:Q9X812 (EMBL:AL049497) (132 aa) fasta scores: E(): 6.2e-15%2C 38.8%25 id in 139 aa.;gbkey=CDS;gene=ML0876;product=putative membrane protein;protein_id=CAC31257.1;transl_table=11
AL450380.1	EMBL	gene	1041502	1042383	.	+	.	ID=gene-mmpS3;Name=mmpS3;gbkey=Gene;gene=mmpS3;gene_biotype=protein_coding;gene_synonym=ML0877
AL450380.1	EMBL	CDS	1041502	1042383	.	+	0	ID=cds-CAC31258.1;Parent=gene-mmpS3;Dbxref=InterPro:IPR008693,UniProtKB/TrEMBL:Q9CCE9,NCBI_GP:CAC31258.1;Name=CAC31258.1;Note=Similar to Mycobacterium tuberculosis putative membrane protein mmpS3 or Rv2198c or MTCY190.09C SW:MMS3_MYCTU (Q10390) (299 aa) fasta scores: E(): 0%2C 69.8%25 id in 308 aa. Contains hydrophobic%2C possible membrane-spanning region.;gbkey=CDS;gene=mmpS3;product=putative membrane protein;protein_id=CAC31258.1;transl_table=11
AL450380.1	EMBL	gene	1042383	1043021	.	+	.	ID=gene-ML0878;Name=ML0878;gbkey=Gene;gene=ML0878;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1042383	1043021	.	+	0	ID=cds-CAC31259.1;Parent=gene-ML0878;Dbxref=InterPro:IPR024381,UniProtKB/TrEMBL:Q9CCE8,NCBI_GP:CAC31259.1;Name=CAC31259.1;Note=Similar to Mycobacterium tuberculosis hypothetical 15.7 kDa protein Rv0008c or MTCY10H4.07C SW:Y008_MYCTU (P71577) (214 aa) fasta scores: E(): 0%2C 62.6%25 id in 211 aa and to Mycobacterium tuberculosis hypothetical 22.5 kDa protein Rv2197c or MTCY190.08C SW:YL97_MYCTU (Q10389) (214 aa) fasta scores: E(): 0%2C 62.6%25 id in 211 aa.;gbkey=CDS;gene=ML0878;product=conserved hypothetical protein;protein_id=CAC31259.1;transl_table=11
AL450380.1	EMBL	gene	1043155	1044810	.	-	.	ID=gene-qcrB;Name=qcrB;gbkey=Gene;gene=qcrB;gene_biotype=protein_coding;gene_synonym=ML0879
AL450380.1	EMBL	CDS	1043155	1044810	.	-	0	ID=cds-CAC31260.1;Parent=gene-qcrB;Dbxref=GOA:P15878,InterPro:IPR005797,InterPro:IPR016174,InterPro:IPR027387,NCBI_GP:CAC31260.1;Name=CAC31260.1;Note=Similar to Mycobacterium tuberculosis ubiquinol-cytochrome C reductase cytochrome B subunit qcrB or Rv2196 or MTCY190.07 SW:QCRB_MYCTU (Q10388) (549 aa) fasta scores: E(): 0%2C 92.5%25 id in 548 aa and to Streptomyces lividans ubiquinol-cytochrome C reductase cytochrome b subunit qcrB SW:QCRB_STRLI (Q9ZFB6) (549 aa) fasta scores: E(): 0%2C 44.8%25 id in 533 aa. N-terminal half is similar to some cytochomes e.g. Bacillus stearothermophilus menaquinol-cytochrome C reductase cytochrome B subunit qcrB SW:QCRB_BACST (Q45658) (224 aa) fasta scores: E(): 1.1e-13%2C 27.1%25 id in 207 aa. Contains hydrophobic%2C probable membrane-spanning regions. Contains Pfam match to entry PF00033 cytochrome_b_N%2C Cytochrome b(N-terminal)/b6/petB.;gbkey=CDS;gene=qcrB;product=putative cytochrome B;protein_id=CAC31260.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1044097	1044747	.	-	.	ID=id-qcrB;Note=Pfam match to entry PF00033 cytochrome_b_N%2C Cytochrome b(N-terminal)/b6/petB%2C score 32.60%2C E-value 3.5e-08;gbkey=misc_feature;gene=qcrB
AL450380.1	EMBL	gene	1044807	1045991	.	-	.	ID=gene-qcrA;Name=qcrA;gbkey=Gene;gene=qcrA;gene_biotype=protein_coding;gene_synonym=ML0880
AL450380.1	EMBL	CDS	1044807	1045991	.	-	0	ID=cds-CAC31261.1;Parent=gene-qcrA;Dbxref=GOA:Q9CCE7,InterPro:IPR017941,UniProtKB/TrEMBL:Q9CCE7,NCBI_GP:CAC31261.1;Name=CAC31261.1;Note=Similar to Mycobacterium tuberculosis putative ubiquinol-cytochrome C reductase iron-sulfur subunit qcrA or Rv2195 or MTCY190.06 SW:QCRA_MYCTU (Q10387) (429 aa) fasta scores: E(): 0%2C 80.9%25 id in 398 aa. Contains hydrophobic%2C probable membrane-spanning regions. Contains PS00200 Rieske iron-sulfur protein signature 2.;gbkey=CDS;gene=qcrA;product=putative Rieske iron-sulphur reductase component;protein_id=CAC31261.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1044963	1044980	.	-	.	ID=id-qcrA;Note=PS00200 Rieske iron-sulfur protein signature 2;gbkey=misc_feature;gene=qcrA
AL450380.1	EMBL	gene	1045988	1046857	.	-	.	ID=gene-qcrC;Name=qcrC;gbkey=Gene;gene=qcrC;gene_biotype=protein_coding;gene_synonym=ML0881
AL450380.1	EMBL	CDS	1045988	1046857	.	-	0	ID=cds-CAC31262.1;Parent=gene-qcrC;Dbxref=GOA:O69583,InterPro:IPR003088,InterPro:IPR009056,InterPro:IPR009152,NCBI_GP:CAC31262.1;Name=CAC31262.1;Note=Similar to Mycobacterium tuberculosis ubiquinol-cytochrome C reductase cytochrome C subunit qcrC or Rv2194 or MTCY190.05 SW:QCRC_MYCTU (Q10386) (280 aa) fasta scores: E(): 0%2C 84.4%25 id in 289 aa and to Streptomyces coelicolor cytochrome C heme-binding subunit SC6G10.23C TR:Q9X808 (EMBL:AL049497) (269 aa) fasta scores: E(): 0%2C 48.9%25 id in 266 aa. Previously sequenced as SW:QCRC_MYCLE (O69583). Contains Pfam match to entry PF00034 cytochrome_c%2C Cytochrome c. Contains 2 x PS00190 Cytochrome C family heme-binding site signature.;gbkey=CDS;gene=qcrC;product=putative cytochrome C reductase cytochrome C component;protein_id=CAC31262.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1046114	1046350	.	-	.	ID=id-qcrC;Note=Pfam match to entry PF00034 cytochrome_c%2C Cytochrome c%2C score 58.10%2C E-value 1.9e-13;gbkey=misc_feature;gene=qcrC
AL450380.1	EMBL	sequence_feature	1046294	1046311	.	-	.	ID=id-qcrC-2;Note=PS00190 Cytochrome C family heme-binding site signature;gbkey=misc_feature;gene=qcrC
AL450380.1	EMBL	sequence_feature	1046597	1046614	.	-	.	ID=id-qcrC-3;Note=PS00190 Cytochrome C family heme-binding site signature;gbkey=misc_feature;gene=qcrC
AL450380.1	EMBL	gene	1046919	1047527	.	-	.	ID=gene-ctaE;Name=ctaE;gbkey=Gene;gene=ctaE;gene_biotype=protein_coding;gene_synonym=ML0882
AL450380.1	EMBL	CDS	1046919	1047527	.	-	0	ID=cds-CAC31263.1;Parent=gene-ctaE;Dbxref=GOA:O69582,InterPro:IPR000298,InterPro:IPR013833,InterPro:IPR024791,NCBI_GP:CAC31263.1;Name=CAC31263.1;Note=Similar to Mycobacterium tuberculosis probable cytochrome C oxidase polypeptide III ctaE or Rv2193 or MTCY190.04 SW:COX3_MYCTU (Q10385) (203 aa) fasta scores: E(): 0%2C 90.1%25 id in 203 aa. Similar to many e.g. Synechococcus vulcanus cytochrome C oxidase polypeptide III ctaE SW:COX3_SYNVU (P50677) (201 aa) fasta scores: E(): 1.2e-23%2C 39.0%25 id in 200 aa. Previously sequenced as TR:O69582 (EMBL:AL022602). Contains hydrophobic%2C probable membrane-spanning regions. Contains Pfam match to entry PF00510 COX3%2C Cytochrome c oxidase subunit III.;gbkey=CDS;gene=ctaE;product=cytochrome C oxidase subunit III;protein_id=CAC31263.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1046928	1047458	.	-	.	ID=id-ctaE;Note=Pfam match to entry PF00510 COX3%2C Cytochrome c oxidase subunit III%2C score -100.70%2C E-value 5.1e-10;gbkey=misc_feature;gene=ctaE
AL450380.1	EMBL	gene	1047664	1048764	.	+	.	ID=gene-trpD;Name=trpD;gbkey=Gene;gene=trpD;gene_biotype=protein_coding;gene_synonym=ML0883
AL450380.1	EMBL	CDS	1047664	1048764	.	+	0	ID=cds-CAC31264.1;Parent=gene-trpD;Dbxref=GOA:O69581,InterPro:IPR000312,InterPro:IPR005940,InterPro:IPR017459,NCBI_GP:CAC31264.1;Name=CAC31264.1;Note=Similar to Mycobacterium tuberculosis anthranilate phosphoribosyltransferase trpD or Rv2192c or MTCY190.03C SW:TRPD_MYCTU (Q10382) (370 aa) fasta scores: E(): 0%2C 80.1%25 id in 362 aa. Similar to many e.g. Streptomyces coelicolor anthranilate phosphoribosyltransferase 1 trpD1 or SC6G10.20C SW:TRD1_STRCO (O68608) (354 aa) fasta scores: E(): 0%2C 48.8%25 id in 363 aa. Previously sequenced as SW:TRPD_MYCLE (O69581). Contains Pfam match to entry PF00591 Glycos_transf_3%2C glycosyl transferase family.;gbkey=CDS;gene=trpD;product=putative anthranilate phosphoribosyltransferase;protein_id=CAC31264.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1047727	1048191	.	+	.	ID=id-trpD;Note=Pfam match to entry PF00591 Glycos_transf_3%2C glycosyl transferase family%2C score 251.50%2C E-value 1.1e-71;gbkey=misc_feature;gene=trpD
AL450380.1	EMBL	pseudogene	1048642	1050388	.	-	.	ID=gene-ML0884;Name=ML0884;gbkey=Gene;gene=ML0884;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1048642	1050388	.	-	0	ID=cds-ML0884;Parent=gene-ML0884;Note=Possible pseudogene of M. tuberculosis orthologue Rv2191 (Best blastx score 194);gbkey=CDS;gene=ML0884;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1050952	1050956	.	+	.	ID=id-AL450380.1:1050952..1050956;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1050963	1052087	.	+	.	ID=gene-ML0885;Name=ML0885;gbkey=Gene;gene=ML0885;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1050963	1052087	.	+	0	ID=cds-CAC31266.1;Parent=gene-ML0885;Dbxref=InterPro:IPR000064,UniProtKB/TrEMBL:Q7AQE3,NCBI_GP:CAC31266.1;Name=CAC31266.1;Note=Similar to Mycobacterium tuberculosis putative secreted protein Rv2190c or MTCY190.01c or MTV021.23C SW:YL90_MYCTU (Q10383%3B O53524) (385 aa) fasta scores: E(): 0%2C 69.2%25 id in 386 aa. Similar to many putative secreted proteins from Streptomyces coelicolor e.g. putative NPL/P60 family secreted protein SCD63A.04C TR:CAB92656 (EMBL:AL356832) (347 aa) fasta scores: E(): 1.4e-13%2C 31.7%25 id in 357 aa. Previously sequenced as TR:O69580 (EMBL:AL022602). Contains a probable N-terminal signal sequence. Contains Pfam match to entry PF00877 NLPC_P60%2C NLP/P60 family.;gbkey=CDS;gene=ML0885;product=putative secreted protein;protein_id=CAC31266.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1051767	1052084	.	+	.	ID=id-ML0885;Note=Pfam match to entry PF00877 NLPC_P60%2C NLP/P60 family%2C score 125.30%2C E-value 1.1e-33;gbkey=misc_feature;gene=ML0885
AL450380.1	EMBL	gene	1052132	1053286	.	+	.	ID=gene-ML0886;Name=ML0886;gbkey=Gene;gene=ML0886;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1052132	1053286	.	+	0	ID=cds-CAC31267.1;Parent=gene-ML0886;Dbxref=GOA:Q7AQE2,InterPro:IPR001296,InterPro:IPR028098,UniProtKB/TrEMBL:Q7AQE2,NCBI_GP:CAC31267.1;Name=CAC31267.1;Note=Previously sequenced Mycobacterium leprae hypothetical protein TR:O69579 (EMBL:AL022602) (384 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 384 aa overlap(EMBL:AL022602). Also similar to Mycobacterium tuberculosis hypothetical protein TR:O53522 (EMBL:AL021957) (399 aa)%3B Fasta score E(): 0%2C 81.5%25 identity in 383 aa overlap(EMBL:AL021957) and several Streptomyces coelicolor putative glycosyl transferases e.g. TR:Q9X7Z1 (EMBL:AL049497) (412 aa)%3B Fasta score E(): 0%2C 52.2%25 identity in 387 aa overlap(EMBL:AL049497). Contains Pfam match to entry PF00534 Glycos_transf_1%2C Glycosyl transferases group 1.;gbkey=CDS;gene=ML0886;product=possible glycosyl transferase.;protein_id=CAC31267.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1052681	1053211	.	+	.	ID=id-ML0886;Note=Pfam match to entry PF00534 Glycos_transf_1%2C Glycosyl transferases group 1%2C score 180.10%2C E-value 3.7e-50;gbkey=misc_feature;gene=ML0886
AL450380.1	EMBL	gene	1053283	1055085	.	-	.	ID=gene-ML0887;Name=ML0887;gbkey=Gene;gene=ML0887;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1053283	1055085	.	-	0	ID=cds-CAC31268.1;Parent=gene-ML0887;Dbxref=GOA:Q9CCE6,InterPro:IPR000873,InterPro:IPR020845,UniProtKB/TrEMBL:Q9CCE6,NCBI_GP:CAC31268.1;Name=CAC31268.1;Note=The C-terminus of the predicted product of this CDS is identical to the previously sequenced Mycobacterium leprae putative long-chain- fatty-acid-CoA ligase TR:O69578 (EMBL:AL022602) (351 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 351 aa overlap(EMBL:AL022602). Also similar to Mycobacterium tuberculosis putative long-chain-fatty-acid-CoA ligase%2C fadD15%2C TR:O53521 (EMBL:AL021957) (600 aa)%3B Fasta score E(): 0%2C 80.3%25 identity in 600 aa overlap(EMBL:AL021957) and Haemophilus influenzae putative long-chain-fatty-acid-CoA ligase (EC 6.2.1.3) SW:LCFH_HAEIN (SW:P44446) (607 aa)%3B Fasta score E(): 0%2C 30.3%25 identity in 587 aa overlap(SW:P44446). Contains Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme. Contains PS00455 Putative AMP-binding domain signature.;gbkey=CDS;gene=ML0887;product=putative long-chain-fatty-acid-CoA ligase;protein_id=CAC31268.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1053607	1054947	.	-	.	ID=id-ML0887;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score -44.40%2C E-value 6.1e-13;gbkey=misc_feature;gene=ML0887
AL450380.1	EMBL	sequence_feature	1054495	1054530	.	-	.	ID=id-ML0887-2;Note=PS00455 Putative AMP-binding domain signature;gbkey=misc_feature;gene=ML0887
AL450380.1	EMBL	ribosome_entry_site	1055093	1055097	.	-	.	ID=id-AL450380.1:1055093..1055097;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	ribosome_entry_site	1055253	1055256	.	+	.	ID=id-AL450380.1:1055253..1055256;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1055260	1055667	.	+	.	ID=gene-ML0888;Name=ML0888;gbkey=Gene;gene=ML0888;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1055260	1055667	.	+	0	ID=cds-CAC31269.1;Parent=gene-ML0888;Dbxref=UniProtKB/TrEMBL:Q7AQE1,NCBI_GP:CAC31269.1;Name=CAC31269.1;Note=Previously sequenced Mycobacterium leprae hypothetical protein TR:O69576 (EMBL:AL022602) (135 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 135 aa overlap(EMBL:AL022602). Also similar to Mycobacterium tuberculosis hypothetical protein TR:O53520 (EMBL:AL021957) (129 aa)%3B Fasta score E(): 0%2C 80.0%25 identity in 130 aa overlap(EMBL:AL021957).;gbkey=CDS;gene=ML0888;product=conserved hypothetical protein;protein_id=CAC31269.1;transl_table=11
AL450380.1	EMBL	gene	1055786	1056220	.	+	.	ID=gene-ML0889;Name=ML0889;gbkey=Gene;gene=ML0889;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1055786	1056220	.	+	0	ID=cds-CAC31270.1;Parent=gene-ML0889;Dbxref=InterPro:IPR005031,InterPro:IPR023393,UniProtKB/TrEMBL:Q7AQE0,NCBI_GP:CAC31270.1;Name=CAC31270.1;Note=Previously sequenced Mycobacterium leprae hypothetical protein TR:O53519 (EMBL:AL021957) (144 aa)%3B Fasta score E(): 0%2C 84.7%25 identity in 144 aa overlap (EMBL:AL021957) (144 aa)%3B Fasta score E(): 0%2C 84.7%25 identity in 144 aa overlap(EMBL:AL021957). Also highly similar to Mycobacterium tuberculosis hypothetical protein TR:O53519(EMBL:AL021957).;gbkey=CDS;gene=ML0889;product=conserved hypothetical protein;protein_id=CAC31270.1;transl_table=11
AL450380.1	EMBL	gene	1056241	1057488	.	+	.	ID=gene-ML0890;Name=ML0890;gbkey=Gene;gene=ML0890;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1056241	1057488	.	+	0	ID=cds-CAC31271.1;Parent=gene-ML0890;Dbxref=GOA:Q7AQD9,InterPro:IPR016300,InterPro:IPR025723,InterPro:IPR027417,UniProtKB/TrEMBL:Q7AQD9,NCBI_GP:CAC31271.1;Name=CAC31271.1;Note=Previously sequenced Mycobacterium leprae hypothetical protein TR:O69574 (EMBL:AL022602) (415 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 415 aa overlap(EMBL:AL022602). Also highly similar%2C in parts%2C to Mycobacterium tuberculosis hypothetical protein TR:O53518 (EMBL:AL021957) (379 aa)%3B Fasta score E(): 0%2C 79.4%25 identity in 378 aa overlap(EMBL:AL021957) and weakly similar to many anion-transporting ATPases e.g. SW:ARA2_ECOLI (SW:P52145) (583 aa)%3B Fasta score E(): 5.2e-07%2C 29.6%25 identity in 314 aa overlap(SW:P52145). Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML0890;product=possible membrane transport ATPase;protein_id=CAC31271.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1056274	1056297	.	+	.	ID=id-ML0890;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML0890
AL450380.1	EMBL	gene	1057485	1057877	.	+	.	ID=gene-ML0891;Name=ML0891;gbkey=Gene;gene=ML0891;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1057485	1057877	.	+	0	ID=cds-CAC31272.1;Parent=gene-ML0891;Dbxref=UniProtKB/TrEMBL:Q7AQD8,NCBI_GP:CAC31272.1;Name=CAC31272.1;Note=Previously sequenced Mycobacterium leprae hypothetical protein TR:O69573 (EMBL:AL022602) (130 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 130 aa overlap. Also highly similar to Mycobacterium tuberculosis hypothetical protein Rv2183c TR:O53517 (EMBL:AL021957) (131 aa)%3B Fasta score E(): 1.3e-30%2C 62.6%25 identity in 131 aa overlap.;gbkey=CDS;gene=ML0891;product=conserved hypothetical protein;protein_id=CAC31272.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1057956	1057959	.	+	.	ID=id-AL450380.1:1057956..1057959;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1057963	1058697	.	+	.	ID=gene-ML0892;Name=ML0892;gbkey=Gene;gene=ML0892;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1057963	1058697	.	+	0	ID=cds-CAC31273.1;Parent=gene-ML0892;Dbxref=GOA:Q7AQD7,InterPro:IPR002123,UniProtKB/TrEMBL:Q7AQD7,NCBI_GP:CAC31273.1;Name=CAC31273.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:O69572 (EMBL:AL022602) (244 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 244 aa overlap. Also highly similar to Mycobacterium tuberculosis hypothetical protein Rv2182c TR:O53516 (EMBL:AL021957) (247 aa)%3B Fasta score E(): 0%2C 79.8%25 identity in 247 aa overlap and several Streptomyces coelicolor putative acyltransferases e.g. TR:CAB76086 (EMBL:AL157956) (223 aa)%3B Fasta score E(): 0%2C 51.1%25 identity in 221 aa overlap. Contains Pfam match to entry PF01553 Acyltransferase%2C Acyltransferase.;gbkey=CDS;gene=ML0892;product=possible acyltransferase;protein_id=CAC31273.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1058038	1058583	.	+	.	ID=id-ML0892;Note=Pfam match to entry PF01553 Acyltransferase%2C Acyltransferase%2C score 154.60%2C E-value 1.6e-42;gbkey=misc_feature;gene=ML0892
AL450380.1	EMBL	gene	1058705	1059991	.	-	.	ID=gene-ML0893;Name=ML0893;gbkey=Gene;gene=ML0893;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1058705	1059991	.	-	0	ID=cds-CAC31274.1;Parent=gene-ML0893;Dbxref=GOA:Q7AQD6,InterPro:IPR018584,UniProtKB/TrEMBL:Q7AQD6,NCBI_GP:CAC31274.1;Name=CAC31274.1;Note=Identical to the previously sequenced Mycobacterium leprae putative integral membrane protein TR:O69571 (EMBL:AL022602) (428 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 428 aa overlap(EMBL:AL022602). Also highly similar to Mycobacterium tuberculosis putative membrane protein TR:O53515 (EMBL:AL021957) (427 aa)%3B Fasta score E(): 0%2C 80.0%25 identity in 431 aa overlap(EMBL:AL021957). Contains multiple possible membrane spanning hydrophobic domains and a possible N-terminal signal sequence.;gbkey=CDS;gene=ML0893;product=probable conserved integral membrane protein;protein_id=CAC31274.1;transl_table=11
AL450380.1	EMBL	pseudogene	1060118	1060871	.	+	.	ID=gene-ML0894;Name=ML0894;gbkey=Gene;gene=ML0894;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1060118	1060871	.	+	0	ID=cds-ML0894;Parent=gene-ML0894;Note=Possible pseudogene of M. tuberculosis orthologue Rv2180c (Best blastx score 217);gbkey=CDS;gene=ML0894;product=probable integral membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1061008	1061523	.	+	.	ID=gene-ML0895;Name=ML0895;gbkey=Gene;gene=ML0895;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1061008	1061523	.	+	0	ID=cds-CAC31276.1;Parent=gene-ML0895;Dbxref=UniProtKB/TrEMBL:Q7AQD5,NCBI_GP:CAC31276.1;Name=CAC31276.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:O69570 (EMBL:AL022602) (171 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 171 aa overlap(EMBL:AL022602) and highly similar to Mycobacterium tuberculosis hypothetical protein TR:O53513 (EMBL:AL021957) (168 aa)%3B Fasta score E(): 0%2C 83.1%25 identity in 166 aa overlap(EMBL:AL021957).;gbkey=CDS;gene=ML0895;product=conserved hypothetical protein;protein_id=CAC31276.1;transl_table=11
AL450380.1	EMBL	gene	1061587	1062975	.	+	.	ID=gene-aroG;Name=aroG;gbkey=Gene;gene=aroG;gene_biotype=protein_coding;gene_synonym=ML0896
AL450380.1	EMBL	CDS	1061587	1062975	.	+	0	ID=cds-CAC31277.1;Parent=gene-aroG;Dbxref=GOA:Q7AQD4,InterPro:IPR002480,UniProtKB/TrEMBL:Q7AQD4,NCBI_GP:CAC31277.1;Name=CAC31277.1;Note=Identical to the previously sequenced Mycobacterium leprae 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase TR:O69569 (EMBL:AL022602) (462 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 462 aa overlap(EMBL:AL022602). Also highly similar to many others e.g. Mycobacterium tuberculosis 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase TR:O53512 (EMBL:AL021957) (462 aa)%3B Fasta score E(): 0%2C 89.7%25 identity in 465 aa overlap(EMBL:AL021957) and similar to many plant DAHP synthetase family proteins e.g. Arabidopsis thaliana SW:AROF_ARATH (SW:P29976) (525 aa)%3B Fasta score E(): 0%2C 49.0%25 identity in 441 aa overlap(SW:P29976). Contains Pfam match to entry PF01474 DAHP_synth_2%2C Class-II DAHP synthetase family.;gbkey=CDS;gene=aroG;product=3-deoxy-D-arabino-heptulosonate 7-phosphate synthase (DAHP synthetase).;protein_id=CAC31277.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1061644	1062957	.	+	.	ID=id-aroG;Note=Pfam match to entry PF01474 DAHP_synth_2%2C Class-II DAHP synthetase family%2C score 1026.80%2C E-value 0;gbkey=misc_feature;gene=aroG
AL450380.1	EMBL	gene	1062988	1064190	.	-	.	ID=gene-ML0897;Name=ML0897;gbkey=Gene;gene=ML0897;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1062988	1064190	.	-	0	ID=cds-CAC31278.1;Parent=gene-ML0897;Dbxref=GOA:Q7AQD3,InterPro:IPR000719,InterPro:IPR008271,InterPro:IPR011009,InterPro:IPR017441,UniProtKB/TrEMBL:Q7AQD3,NCBI_GP:CAC31278.1;Name=CAC31278.1;Note=Identical to the previously sequenced Mycobacterium leprae putative serine/threonine protein kinase TR:O69568 (EMBL:AL022602) (400 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 400 aa overlap(EMBL:AL022602). Also highly similar to many other putative serine/threonine protein kinases e.g. from Mycobacterium tuberculosis: TR:O53510 (EMBL:AL021957) (399 aa)%3B Fasta score E(): 0%2C 75.3%25 identity in 400 aa overlap(EMBL:AL021957) and SW:PKNB_MYCTU (SW:P71584) (626 aa)%3B Fasta score E(): 2e-31%2C 39.5%25 identity in 311 aa overlap(SW:P71584). Contains Pfam match to entry PF00069 pkinase%2C Eukaryotic protein kinase domain. Contains PS00108 Serine/Threonine protein kinases active-site signature. Contains PS00107 Protein kinases ATP-binding region signature.%3B~Similar to ML0016 and ML0017;gbkey=CDS;gene=ML0897;product=serine-threonine protein kinase;protein_id=CAC31278.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1063576	1064175	.	-	.	ID=id-ML0897;Note=Pfam match to entry PF00069 pkinase%2C Eukaryotic protein kinase domain%2C score 183.90%2C E-value 2.5e-51;gbkey=misc_feature;gene=ML0897
AL450380.1	EMBL	sequence_feature	1063780	1063818	.	-	.	ID=id-ML0897-2;Note=PS00108 Serine/Threonine protein kinases active-site signature;gbkey=misc_feature;gene=ML0897
AL450380.1	EMBL	sequence_feature	1064086	1064157	.	-	.	ID=id-ML0897-3;Note=PS00107 Protein kinases ATP-binding region signature;gbkey=misc_feature;gene=ML0897
AL450380.1	EMBL	gene	1064343	1064747	.	+	.	ID=gene-ML0898;Name=ML0898;gbkey=Gene;gene=ML0898;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1064343	1064747	.	+	0	ID=cds-CAC31279.1;Parent=gene-ML0898;Dbxref=GOA:Q7AQD2,UniProtKB/TrEMBL:Q7AQD2,NCBI_GP:CAC31279.1;Name=CAC31279.1;Note=Identical to the previously sequenced Mycobacterium leprae putative transcriptional regulator TR:O69567 (EMBL:AL022602) (134 aa)%3B Fasta score E(): 0%2C 99.3%25 identity in 134 aa overlap(EMBL:AL022602). Also highly similar to Mycobacterium tuberculosis hypothetical protein TR:O5350 (EMBL:AL021957) (146 aa)%3B Fasta score E(): 0%2C 82.1%25 identity in 134 aa overlap(EMBL:AL021957). Contains a probable helix-turn-helix motif at aa 18-39 (Score 1581%2C SD +4.57);gbkey=CDS;gene=ML0898;product=putative DNA-binding protein;protein_id=CAC31279.1;transl_table=11
AL450380.1	EMBL	gene	1064744	1066261	.	-	.	ID=gene-ML0899;Name=ML0899;gbkey=Gene;gene=ML0899;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1064744	1066261	.	-	0	ID=cds-CAC31280.1;Parent=gene-ML0899;Dbxref=InterPro:IPR017822,UniProtKB/TrEMBL:Q7AQD1,NCBI_GP:CAC31280.1;Name=CAC31280.1;Note=Identical to the previously sequenced Mycobacterium leprae putative integral membrane protein TR:O69566 (EMBL:AL022602) (505 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 505 aa overlap(EMBL:AL022602). Also highly similar to Mycobacterium tuberculosis putative membrane protein TR:O53508 (EMBL:AL021957) (516 aa)%3B Fasta score E(): 0%2C 78.9%25 identity in 502 aa overlap(EMBL:AL021957). Contains multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML0899;product=probable integral-membrane protein;protein_id=CAC31280.1;transl_table=11
AL450380.1	EMBL	pseudogene	1066278	1067324	.	-	.	ID=gene-idsA2;Name=idsA2;gbkey=Gene;gene=idsA2;gene_biotype=pseudogene;gene_synonym=ML0900;pseudo=true
AL450380.1	EMBL	CDS	1066278	1067324	.	-	0	ID=cds-idsA2;Parent=gene-idsA2;Note=Possible pseudogene of M. tuberculosis orthologue idsA2 (Best blastx score 561);gbkey=CDS;gene=idsA2;product=geranylgeranyl pyrophosphate synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	sequence_feature	1066608	1066646	.	-	.	ID=id-idsA2;Note=PS00444 Polyprenyl synthetases signature 2;gbkey=misc_feature;gene=idsA2;pseudo=true
AL450380.1	EMBL	ribosome_entry_site	1067591	1067595	.	+	.	ID=id-AL450380.1:1067591..1067595;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1067600	1068514	.	+	.	ID=gene-ML0901;Name=ML0901;gbkey=Gene;gene=ML0901;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1067600	1068514	.	+	0	ID=cds-CAC31282.1;Parent=gene-ML0901;Dbxref=UniProtKB/TrEMBL:Q7AQD0,NCBI_GP:CAC31282.1;Name=CAC31282.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:O69565 (EMBL:AL022602) (304 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 304 aa overlap(EMBL:AL022602). Also highly similar to Mycobacterium tuberculosis hypothetical protein TR:O53506 (EMBL:AL021957) (301 aa)%3B Fasta score E(): 0%2C 80.9%25 identity in 299 aa overlap(EMBL:AL021957).;gbkey=CDS;gene=ML0901;product=conserved hypothetical protein;protein_id=CAC31282.1;transl_table=11
AL450380.1	EMBL	gene	1068511	1069230	.	-	.	ID=gene-ML0902;Name=ML0902;gbkey=Gene;gene=ML0902;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1068511	1069230	.	-	0	ID=cds-CAC31283.1;Parent=gene-ML0902;Dbxref=UniProtKB/TrEMBL:Q7AQC9,NCBI_GP:CAC31283.1;Name=CAC31283.1;Note=Identical to the previously sequenced Mycobacterium leprae putative lipoprotein TR:O69564 (EMBL:AL022602) (239 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 239 aa overlap(EMBL:AL022602) and also highly similar to another putative lipoprotein from Mycobacterium tuberculosis TR:O53505 (EMBL:AL021957) (227 aa)%3B Fasta score E(): 0%2C 75.4%25 identity in 224 aa overlap(EMBL:AL021957). Contains a possible N-terminal signal sequence. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=ML0902;product=probable lipoprotein;protein_id=CAC31283.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1069120	1069152	.	-	.	ID=id-ML0902;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=ML0902
AL450380.1	EMBL	gene	1069302	1069934	.	-	.	ID=gene-ML0903;Name=ML0903;gbkey=Gene;gene=ML0903;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1069302	1069934	.	-	0	ID=cds-CAC31284.1;Parent=gene-ML0903;Dbxref=GOA:Q7AQC8,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:Q7AQC8,NCBI_GP:CAC31284.1;Name=CAC31284.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:O69563 (EMBL:AL022602) (210 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 210 aa overlap(EMBL:AL022602). Also highly similar to another protein of undefined function from Mycobacterium tuberculosis TR:O53504 (EMBL:AL021957) (206 aa)%3B Fasta score E(): 0%2C 76.7%25 identity in 210 aa overlap(EMBL:AL021957).;gbkey=CDS;gene=ML0903;product=conserved hypothetical protein;protein_id=CAC31284.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1069945	1069950	.	-	.	ID=id-AL450380.1:1069945..1069950;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	ribosome_entry_site	1070241	1070245	.	+	.	ID=id-AL450380.1:1070241..1070245;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1070251	1070655	.	+	.	ID=gene-ML0904;Name=ML0904;gbkey=Gene;gene=ML0904;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1070251	1070655	.	+	0	ID=cds-CAC31285.1;Parent=gene-ML0904;Dbxref=InterPro:IPR021401,UniProtKB/TrEMBL:Q7AQC7,NCBI_GP:CAC31285.1;Name=CAC31285.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:O69562 (EMBL:AL022602) (134 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 134 aa overlap(EMBL:AL022602). Also highly similar to several others e.g. Mycobacterium tuberculosis hypothetical protein TR:O53503 (EMBL:AL021957) (134 aa)%3B Fasta score E(): 0%2C 86.6%25 identity in 134 aa overlap(EMBL:AL021957) and Streptomyces coelicolor putative membrane protein TR:Q9XAJ8 (EMBL:AL079348) (96 aa)%3B Fasta score E(): 0.22%2C 38.3%25 identity in 60 aa overlap(EMBL:AL079348). Contains a large central possible membrane spanning hydrophobic domain.;gbkey=CDS;gene=ML0904;product=probable membrane protein;protein_id=CAC31285.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1071016	1071021	.	+	.	ID=id-AL450380.1:1071016..1071021;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1071028	1071459	.	+	.	ID=gene-ML0905;Name=ML0905;gbkey=Gene;gene=ML0905;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1071028	1071459	.	+	0	ID=cds-CAC31286.1;Parent=gene-ML0905;Dbxref=GOA:O69561,InterPro:IPR003444,InterPro:IPR020603,NCBI_GP:CAC31286.1;Name=CAC31286.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein SW:YL66_MYCLE (SW:O69561) (143 aa)%3B Fasta score E(): 0%2C 99.3%25 identity in 143 aa overlap(SW:O69561). Also highly similar to many other proteins of undefined function including: Mycobacterium tuberculosis SW:YL66_MYCTU (SW:O06211) (143 aa)%3B Fasta score E(): 0%2C 92.3%25 identity in 142 aa overlap(SW:O06211) and Escherichia coli SW:YABB_ECOLI (SW:P22186) (152 aa)%3B Fasta score E(): 3.8e-11%2C 32.0%25 identity in 147 aa overlap(SW:P22186).;gbkey=CDS;gene=ML0905;product=conserved hypothetical protein;protein_id=CAC31286.1;transl_table=11
AL450380.1	EMBL	gene	1071587	1072705	.	+	.	ID=gene-ML0906;Name=ML0906;gbkey=Gene;gene=ML0906;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1071587	1072705	.	+	0	ID=cds-CAC31287.1;Parent=gene-ML0906;Dbxref=GOA:O69560,InterPro:IPR002903,InterPro:IPR023397,InterPro:IPR029063,NCBI_GP:CAC31287.1;Name=CAC31287.1;Note=Identical over 340 aa to the previously sequenced Mycobacterium leprae hypothetical protein SW:YL65_MYCLE (SW:O69560) (340 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 340 aa overlap(SW:O69560). Also highly similar to many other proteins of undefined function including: Mycobacterium tuberculosis TR:O06212 (EMBL:Z95388) (396 aa)%3B Fasta score E(): 0%2C 74.2%25 identity in 376 aa overlap(EMBL:Z95388) and Escherichia coli SW:YABC_ECOLI (SW:P18595) (313 aa)%3B Fasta score E(): 0%2C 41.6%25 identity in 298 aa overlap(SW:P18595). Contains Pfam match to entry PF01795 DUF36%2C Domain of unknown function.;gbkey=CDS;gene=ML0906;product=conserved hypothetical protein;protein_id=CAC31287.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1071704	1072657	.	+	.	ID=id-ML0906;Note=Pfam match to entry PF01795 DUF36%2C Domain of unknown function%2C score 560.70%2C E-value 9.8e-165;gbkey=misc_feature;gene=ML0906
AL450380.1	EMBL	ribosome_entry_site	1072688	1072693	.	+	.	ID=id-ML0906-2;Parent=gene-ML0906;gbkey=regulatory;gene=ML0906;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1072702	1073835	.	+	.	ID=gene-ML0907;Name=ML0907;gbkey=Gene;gene=ML0907;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1072702	1073835	.	+	0	ID=cds-CAC31288.1;Parent=gene-ML0907;Dbxref=UniProtKB/TrEMBL:Q7AQC6,NCBI_GP:CAC31288.1;Name=CAC31288.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:O69559 (EMBL:AL022602) (377 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 377 aa overlap(EMBL:AL022602). Also highly similar to Mycobacterium tuberculosis TR:O06213 (EMBL:Z95388) (384 aa)%3B Fasta score E(): 0%2C 62.2%25 identity in 397 aa overlap(EMBL:Z95388). Contains a possible membrane spanning hydrophobic domain and a possible coiled-coil between residues 155..168.;gbkey=CDS;gene=ML0907;product=putative conserved membrane protein;protein_id=CAC31288.1;transl_table=11
AL450380.1	EMBL	gene	1073832	1075859	.	+	.	ID=gene-pbpB;Name=pbpB;gbkey=Gene;gene=pbpB;gene_biotype=protein_coding;gene_synonym=ML0908
AL450380.1	EMBL	CDS	1073832	1075859	.	+	0	ID=cds-CAC31289.1;Parent=gene-pbpB;Dbxref=GOA:Q7AQC5,InterPro:IPR001460,InterPro:IPR005311,InterPro:IPR012338,UniProtKB/TrEMBL:Q7AQC5,NCBI_GP:CAC31289.1;Name=CAC31289.1;Note=Identical to the previously sequenced Mycobacterium leprae penicillin binding protein 2 TR:O69558 (EMBL:AL022602) (675 aa)%3B Fasta score E(): 0%2C 99.9%25 identity in 675 aa overlap(EMBL:AL022602). Also highly similar to Mycobacterium tuberculosis hypothetical protein TR:O06214 (EMBL:Z95388) (679 aa)%3B Fasta score E(): 0%2C 80.6%25 identity in 677 aa overlap(EMBL:Z95388) and to many other penicillin-binding proteins e.g. Neisseria meningitidis SW:PBP2_NEIME (P11882) (581 aa)%3B Fasta score E(): 4.3e-29%2C 32.4%25 identity in 590 aa overlap(P11882). Contains Pfam match to entry PF00905 Transpeptidase%2C Penicillin binding protein transpeptidase domain. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=pbpB;product=penicillin-binding protein 2;protein_id=CAC31289.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1074765	1075778	.	+	.	ID=id-pbpB;Note=Pfam match to entry PF00905 Transpeptidase%2C Penicillin binding protein transpeptidase domain%2C score 417.90%2C E-value 9.6e-122;gbkey=misc_feature;gene=pbpB
AL450380.1	EMBL	sequence_feature	1075575	1075598	.	+	.	ID=id-pbpB-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=pbpB
AL450380.1	EMBL	ribosome_entry_site	1075995	1076001	.	+	.	ID=id-AL450380.1:1075995..1076001;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1076001	1077593	.	+	.	ID=gene-murE;Name=murE;gbkey=Gene;gene=murE;gene_biotype=protein_coding;gene_synonym=ML0909
AL450380.1	EMBL	CDS	1076001	1077593	.	+	0	ID=cds-CAC31290.1;Parent=gene-murE;Dbxref=GOA:O69557,InterPro:IPR000713,InterPro:IPR004101,InterPro:IPR005761,InterPro:IPR013221,NCBI_GP:CAC31290.1;Name=CAC31290.1;Note=Identical to the previously sequenced Mycobacterium leprae UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopimelateligase (EC 6.3.2.13) SW:MURE_MYCLE (AL022602) (530 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 530 aa overlap. Also highly similar to MurE orthologues from Mycobacterium tuberculosis SW:MURE_MYCTU (O06219) (535 aa)%3B Fasta score E(): 0%2C 74.4%25 identity in 519 aa overlap and Escherichia coli SW:MURE_ECOLI (P22188) (494 aa)%3B Fasta score E(): 0%2C 39.1%25 identity in 493 aa overlap. Contains Pfam match to entry PF01225 Mur_ligase%2C Mur ligase family.;gbkey=CDS;gene=murE;product=UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopime ligase (meso-diaminopimelate-adding enzyme).;protein_id=CAC31290.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1076400	1077149	.	+	.	ID=id-murE;Note=Pfam match to entry PF01225 Mur_ligase%2C Mur ligase family%2C score 297.90%2C E-value 1.3e-85;gbkey=misc_feature;gene=murE
AL450380.1	EMBL	gene	1077590	1079143	.	+	.	ID=gene-murF;Name=murF;gbkey=Gene;gene=murF;gene_biotype=protein_coding;gene_synonym=ML0910
AL450380.1	EMBL	CDS	1077590	1079143	.	+	0	ID=cds-CAC31291.1;Parent=gene-murF;Dbxref=GOA:O69556,InterPro:IPR000713,InterPro:IPR004101,InterPro:IPR005863,InterPro:IPR013221,NCBI_GP:CAC31291.1;Name=CAC31291.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein UDP-N-acetylmuramoylalanyl-D-glutamyl -2%2C6-diaminopimelate--D-alanyl-D-alanyl ligase TR:O69556 (EMBL:AL022602) (517 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 517 aa overlap(EMBL:AL022602). Also highly similar to MurF orthologues from Mycobacterium tuberculosis SW:MURF_MYCTU (SW:O06220) (510 aa)%3B Fasta score E(): 0%2C 75.5%25 identity in 531 aa overlap(SW:O06220) and Escherichia coli SW:MURF_ECOLI (SW:P11880) (452 aa)%3B Fasta score E(): 1.7e-09%2C 31.0%25 identity in 519 aa overlap(SW:P11880). Contains Pfam match to entry PF01225 Mur_ligase%2C Mur ligase family.;gbkey=CDS;gene=murF;product=UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-diaminopimelate--D-alanyl-D-alanyl ligase (D-alanine:D-alanine-adding enzyme);protein_id=CAC31291.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1077986	1078726	.	+	.	ID=id-murF;Note=Pfam match to entry PF01225 Mur_ligase%2C Mur ligase family%2C score 267.70%2C E-value 1.6e-76;gbkey=misc_feature;gene=murF
AL450380.1	EMBL	gene	1079140	1080219	.	+	.	ID=gene-mraY;Name=mraY;gbkey=Gene;gene=mraY;gene_biotype=protein_coding;gene_synonym=ML0911
AL450380.1	EMBL	CDS	1079140	1080219	.	+	0	ID=cds-CAC31292.1;Parent=gene-mraY;Dbxref=GOA:O69555,InterPro:IPR000715,InterPro:IPR003524,InterPro:IPR018480,NCBI_GP:CAC31292.1;Name=CAC31292.1;Note=Identical to the previously sequenced Mycobacterium leprae phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) SW:MRAY_MYCLE (SW:O69555) (359 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 359 aa overlap(SW:O69555). Also highly similar to phospho-N-acetylmuramoyl-pentapeptide-transferases from Mycobacterium tuberculosis SW:MRAY_MYCTU (SW:O06221) (359 aa)%3B Fasta score E(): 0%2C 91.1%25 identity in 359 aa overlap(SW:O06221) and Escherichia coli SW:MRAY_ECOLI (SW:P15876) (360 aa)%3B Fasta score E(): 6.2e-29%2C 35.9%25 identity in 343 aa overlap(SW:P15876). Contains multiple possible membrane spanning hydrophobic domains and a possible N-terminal signal sequence. Contains Pfam match to entry PF00953 Glycos_transf_4%2C Glycosyl transferase.;gbkey=CDS;gene=mraY;product=phospho-N-acetylmuramoyl-pentapeptidetransferase;protein_id=CAC31292.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1079389	1079985	.	+	.	ID=id-mraY;Note=Pfam match to entry PF00953 Glycos_transf_4%2C Glycosyl transferase%2C score 274.30%2C E-value 1.6e-78;gbkey=misc_feature;gene=mraY
AL450380.1	EMBL	gene	1080221	1081693	.	+	.	ID=gene-murD;Name=murD;gbkey=Gene;gene=murD;gene_biotype=protein_coding;gene_synonym=ML0912
AL450380.1	EMBL	CDS	1080221	1081693	.	+	0	ID=cds-CAC31293.1;Parent=gene-murD;Dbxref=GOA:P57995,InterPro:IPR004101,InterPro:IPR005762,InterPro:IPR013221,InterPro:IPR016040,NCBI_GP:CAC31293.1;Name=CAC31293.1;Note=Identical to the previously sequenced Mycobacterium leprae UDP-N-acetylmuramoylalanine-D-glutamate ligase TR:O69554 (EMBL:AL022602) (490 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 490 aa overlap(EMBL:AL022602). Also highly similar to orthologues from Mycobacterium tuberculosis SW:MURD_MYCTU (SW:O06222) (486 aa)%3B Fasta score E(): 0%2C 75.9%25 identity in 493 aa overlap(SW:O06222) and Bacillus subtilis SW:MURD_BACSU (SW:Q03522) (451 aa)%3B Fasta score E(): 7.1e-24%2C 28.4%25 identity in 493 aa overlap(SW:Q03522). Contains Pfam match to entry PF01225 Mur_ligase%2C Mur ligase family.;gbkey=CDS;gene=murD;product=UDP-N-acetylmuramoylalanine-D-glutamate ligase;protein_id=CAC31293.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1080575	1081243	.	+	.	ID=id-murD;Note=Pfam match to entry PF01225 Mur_ligase%2C Mur ligase family%2C score 251.30%2C E-value 1.3e-71;gbkey=misc_feature;gene=murD
AL450380.1	EMBL	ribosome_entry_site	1081692	1081696	.	+	.	ID=id-AL450380.1:1081692..1081696;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1081700	1083304	.	+	.	ID=gene-ftsW;Name=ftsW;gbkey=Gene;gene=ftsW;gene_biotype=protein_coding;gene_synonym=ML0913
AL450380.1	EMBL	CDS	1081700	1083304	.	+	0	ID=cds-CAC31294.1;Parent=gene-ftsW;Dbxref=GOA:Q7AQC4,InterPro:IPR001182,InterPro:IPR013437,InterPro:IPR018365,UniProtKB/TrEMBL:Q7AQC4,NCBI_GP:CAC31294.1;Name=CAC31294.1;Note=Identical to the previously sequenced Mycobacterium leprae cell division protein%2C FtsW%2C TR:O69553 (EMBL:AL022602) (534 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 534 aa overlap(EMBL:AL022602). Also highly similar many other FtsW-family proteins involved in cell wall formation e.g. from Mycobacterium tuberculosis FtsW-like protein SW:FTWH_MYCTU (SW:O06223) (524 aa)%3B Fasta score E(): 0%2C 76.5%25 identity in 528 aa overlap(SW:O06223) and Escherichia coli FtsW SW:FTSW_ECOLI (SW:P16457) (414 aa)%3B Fasta score E(): 3.6e-31%2C 37.0%25 identity in 370 aa overlap(SW:P16457). Contains multiple possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF01098 FTSW_RODA_SPOVE%2C Cell cycle protein. Contains PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. Contains PS00041 Bacterial regulatory proteins%2C araC family signature.;gbkey=CDS;gene=ftsW;product=putative cell division protein FtsW;protein_id=CAC31294.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1081910	1082983	.	+	.	ID=id-ftsW;Note=Pfam match to entry PF01098 FTSW_RODA_SPOVE%2C Cell cycle protein%2C score 564.50%2C E-value 7e-166;gbkey=misc_feature;gene=ftsW
AL450380.1	EMBL	sequence_feature	1082798	1082926	.	+	.	ID=id-ftsW-2;Note=PS00041 Bacterial regulatory proteins%2C araC family signature;gbkey=misc_feature;gene=ftsW
AL450380.1	EMBL	sequence_feature	1082849	1082923	.	+	.	ID=id-ftsW-3;Note=PS00428 Cell cycle proteins ftsW / rodA / spoVE signature;gbkey=misc_feature;gene=ftsW
AL450380.1	EMBL	gene	1083301	1084524	.	+	.	ID=gene-murG;Name=murG;gbkey=Gene;gene=murG;gene_biotype=protein_coding;gene_synonym=ML0914
AL450380.1	EMBL	CDS	1083301	1084524	.	+	0	ID=cds-CAC31295.1;Parent=gene-murG;Dbxref=GOA:O69552,InterPro:IPR004276,InterPro:IPR006009,InterPro:IPR007235,NCBI_GP:CAC31295.1;Name=CAC31295.1;Note=Identical to the previously sequenced Mycobacterium leprae UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.-) SW:MURG_MYCLE (SW:O69552) (407 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 407 aa overlap(SW:O69552). Also highly similar to orthologues from Mycobacterium tuberculosis SW:MURG_MYCTU (SW:O06224) (410 aa)%3B Fasta score E(): 0%2C 76.3%25 identity in 401 aa overlap(SW:O06224) and Escherichia coli SW:MURG_ECOLI (SW:P17443) (354 aa)%3B Fasta score E(): 4.2e-21%2C 38.1%25 identity in 365 aa overlap(SW:P17443). Contains a possible membrane spanning hydrophobic domain.;gbkey=CDS;gene=murG;product=UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapept pyrophosphoryl-undecaprenol N-acetylglucosamine transferase;protein_id=CAC31295.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1084510	1084514	.	+	.	ID=id-murG;Parent=gene-murG;gbkey=regulatory;gene=murG;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1084521	1086008	.	+	.	ID=gene-murC;Name=murC;gbkey=Gene;gene=murC;gene_biotype=protein_coding;gene_synonym=ML0915
AL450380.1	EMBL	CDS	1084521	1086008	.	+	0	ID=cds-CAC31296.1;Parent=gene-murC;Dbxref=GOA:P57994,InterPro:IPR000713,InterPro:IPR004101,InterPro:IPR005758,InterPro:IPR013221,InterPro:IPR016040,NCBI_GP:CAC31296.1;Name=CAC31296.1;Note=Identical%2C over available sequence%2C to the previously sequenced Mycobacterium leprae UDP-N-acetylmuramate-alanine ligase (fragment) TR:O69551 (EMBL:AL022602) (235 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 235 aa overlap(EMBL:AL022602). Also highly similar to UDP-N-acetylmuramate-alanine ligases from Mycobacterium tuberculosis SW:MURC_MYCTU (SW:O06225) (494 aa)%3B Fasta score E(): 0%2C 79.8%25 identity in 494 aa overlap(SW:O06225) and Escherichia coli SW:MURC_ECOLI (SW:P17952) (491 aa)%3B Fasta score E(): 0%2C 35.2%25 identity in 477 aa overlap(SW:P17952). Contains Pfam match to entry PF01225 Mur_ligase%2C Mur ligase family.;gbkey=CDS;gene=murC;product=UDP-N-acetyl-muramate-alanine ligase;protein_id=CAC31296.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1084869	1085591	.	+	.	ID=id-murC;Note=Pfam match to entry PF01225 Mur_ligase%2C Mur ligase family%2C score 213.20%2C E-value 3.8e-60;gbkey=misc_feature;gene=murC
AL450380.1	EMBL	ribosome_entry_site	1085994	1085997	.	+	.	ID=id-murC-2;Parent=gene-murC;gbkey=regulatory;gene=murC;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1086005	1087030	.	+	.	ID=gene-ML0916;Name=ML0916;gbkey=Gene;gene=ML0916;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1086005	1087030	.	+	0	ID=cds-CAC31297.1;Parent=gene-ML0916;Dbxref=GOA:Q9CCE5,InterPro:IPR005548,InterPro:IPR013685,InterPro:IPR026579,UniProtKB/TrEMBL:Q9CCE5,NCBI_GP:CAC31297.1;Name=CAC31297.1;Note=Similar to many FtsQ-family proteins thought to be involved in septum formation e.g. Mycobacterium tuberculosis SW:FTSQ_MYCTU (SW:O06226) (314 aa)%3B Fasta score E(): 0%2C 75.4%25 identity in 297 aa overlap(SW:O06226) and in parts to Corynebacterium glutamicum SW:FTSQ_CORGL (SW:O24745) (222 aa)%3B Fasta score E(): 2.3e-13%2C 26.6%25 identity in 203 aa overlap(SW:O24745). Contains a possible membrane spanning hydrophobic domain.;gbkey=CDS;gene=ML0916;product=putative FtsQ-family protein;protein_id=CAC31297.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1087281	1087285	.	+	.	ID=id-AL450380.1:1087281..1087285;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1087296	1088435	.	+	.	ID=gene-ftsZ;Name=ftsZ;gbkey=Gene;gene=ftsZ;gene_biotype=protein_coding;gene_synonym=ML0917
AL450380.1	EMBL	CDS	1087296	1088435	.	+	0	ID=cds-CAC31298.1;Parent=gene-ftsZ;Dbxref=GOA:Q9CCE4,InterPro:IPR000158,InterPro:IPR003008,InterPro:IPR008280,InterPro:IPR018316,InterPro:IPR020805,InterPro:IPR024757,NCBI_GP:CAC31298.1;Name=CAC31298.1;Note=Highly similar to many proteins essential for cell division including: Mycobacterium tuberculosis SW:FTSZ_MYCTU (O08378) (379 aa)%3B Fasta score E(): 0%2C 96.6%25 identity in 379 aa overlap and Streptomyces griseus SW:FTSZ_STRGR (P45501) (407 aa)%3B Fasta score E(): 0%2C 68.7%25 identity in 390 aa overlap. Contains Pfam match to entry PF00091 tubulin%2C Tubulin/FtsZ family. Contains PS01134 FtsZ protein signature 1. Contains PS01135 FtsZ protein signature 2.;gbkey=CDS;gene=ftsZ;product=cell division protein;protein_id=CAC31298.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1087416	1087520	.	+	.	ID=id-ftsZ;Note=PS01134 FtsZ protein signature 1;gbkey=misc_feature;gene=ftsZ
AL450380.1	EMBL	sequence_feature	1087467	1087928	.	+	.	ID=id-ftsZ-2;Note=Pfam match to entry PF00091 tubulin%2C Tubulin/FtsZ family%2C score 62.60%2C E-value 3.5e-15;gbkey=misc_feature;gene=ftsZ
AL450380.1	EMBL	sequence_feature	1087575	1087640	.	+	.	ID=id-ftsZ-3;Note=PS01135 FtsZ protein signature 2;gbkey=misc_feature;gene=ftsZ
AL450380.1	EMBL	gene	1088458	1089207	.	+	.	ID=gene-ML0918;Name=ML0918;gbkey=Gene;gene=ML0918;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1088458	1089207	.	+	0	ID=cds-CAC31299.1;Parent=gene-ML0918;Dbxref=InterPro:IPR003730,InterPro:IPR011324,NCBI_GP:CAC31299.1;Name=CAC31299.1;Note=Similar to many proteins of unknown function including: Mycobacterium tuberculosis TR:O06227 (EMBL:Z95388) (250 aa)%3B Fasta score E(): 0%2C 60.2%25 identity in 244 aa overlap and Streptomyces griseus SW:YFIH_STRGR (P45496) (246 aa)%3B Fasta score E(): 5.8e-21%2C 38.0%25 identity in 245 aa overlap. Note bothe of htese examples are also found downstream of FtsZ.;gbkey=CDS;gene=ML0918;product=conserved hypothetical protein;protein_id=CAC31299.1;transl_table=11
AL450380.1	EMBL	gene	1089204	1089986	.	+	.	ID=gene-ML0919;Name=ML0919;gbkey=Gene;gene=ML0919;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1089204	1089986	.	+	0	ID=cds-CAC31300.1;Parent=gene-ML0919;Dbxref=InterPro:IPR001608,InterPro:IPR011078,InterPro:IPR029066,NCBI_GP:CAC31300.1;Name=CAC31300.1;Note=Similar to many proteins of unknown function including: Mycobacterium tuberculosis SW:YL48_MYCTU (O06228) (258 aa)%3B Fasta score E(): 0%2C 73.6%25 identity in 258 aa overlap and Corynebacterium glutamicum SW:YFZ1_CORGL (O24748) (221 aa)%3B Fasta score E(): 7e-22%2C 41.6%25 identity in 231 aa overlap. Contains a probable helix-turn-helix motif at aa 78-99 (Score 1061%2C SD +2.80) Contains Pfam match to entry PF01168 UPF0001%2C Uncharacterized protein family UPF0001. Contains PS01211 Uncharacterized protein family UPF0001 signature.;gbkey=CDS;gene=ML0919;product=possible DNA-binding protein;protein_id=CAC31300.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1089261	1089974	.	+	.	ID=id-ML0919;Note=Pfam match to entry PF01168 UPF0001%2C Uncharacterized protein family UPF0001%2C score 84.00%2C E-value 3.2e-21;gbkey=misc_feature;gene=ML0919
AL450380.1	EMBL	sequence_feature	1089498	1089542	.	+	.	ID=id-ML0919-2;Note=PS01211 Uncharacterized protein family UPF0001 signature;gbkey=misc_feature;gene=ML0919
AL450380.1	EMBL	gene	1090054	1090686	.	+	.	ID=gene-ML0920;Name=ML0920;gbkey=Gene;gene=ML0920;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1090054	1090686	.	+	0	ID=cds-CAC31301.1;Parent=gene-ML0920;Dbxref=GOA:Q9CCE1,InterPro:IPR007561,InterPro:IPR023052,NCBI_GP:CAC31301.1;Name=CAC31301.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein TR:O06229 (EMBL:Z95388) (241 aa)%3B Fasta score E(): 0%2C 83.5%25 identity in 218 aa overlap. Note the Mycobacterium leprae protein is 23 aa shorter.;gbkey=CDS;gene=ML0920;product=hypothetical protein;protein_id=CAC31301.1;transl_table=11
AL450380.1	EMBL	gene	1090811	1091101	.	+	.	ID=gene-ML0921;Name=ML0921;gbkey=Gene;gene=ML0921;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1090811	1091101	.	+	0	ID=cds-CAC31302.1;Parent=gene-ML0921;Dbxref=GOA:Q9CCE0,InterPro:IPR003425,UniProtKB/TrEMBL:Q9CCE0,NCBI_GP:CAC31302.1;Name=CAC31302.1;Note=Similar to several proteins of unknown function e.g. Mycobacterium tuberculosis TR:O06230 (EMBL:Z95388) (96 aa)%3B Fasta score E(): 2.8e-32%2C 88.5%25 identity in 96 aa overlap and Streptomyces coelicolor TR:Q9S2X3 (EMBL:AL109663) (94 aa)%3B Fasta score E(): 2.9e-12%2C 40.7%25 identity in 86 aa overlap. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML0921;product=possible membrane protein;protein_id=CAC31302.1;transl_table=11
AL450380.1	EMBL	gene	1091348	1092148	.	+	.	ID=gene-ag84;Name=ag84;gbkey=Gene;gene=ag84;gene_biotype=protein_coding;gene_synonym=ML0922
AL450380.1	EMBL	CDS	1091348	1092148	.	+	0	ID=cds-CAC31303.1;Parent=gene-ag84;Dbxref=GOA:P46815,InterPro:IPR007793,InterPro:IPR019933,NCBI_GP:CAC31303.1;Name=CAC31303.1;Note=Identical to the previously sequenced and characterised Mycobacterium leprae antigen 84 SW:AG84_MYCLE (P46815) (266 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 266 aa overlap. Also highly similar to Mycobacterium tuberculosis SW:AG84_MYCTU (P46816) (260 aa)%3B Fasta score E(): 0%2C 83.1%25 identity in 266 aa overlap. Contains several possible coiled-coil regions.;gbkey=CDS;gene=ag84;product=immunogenic protein%2C antigen 84;protein_id=CAC31303.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1092209	1092213	.	+	.	ID=id-AL450380.1:1092209..1092213;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1092221	1092613	.	+	.	ID=gene-ML0923;Name=ML0923;gbkey=Gene;gene=ML0923;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1092221	1092613	.	+	0	ID=cds-CAC31304.1;Parent=gene-ML0923;Dbxref=UniProtKB/TrEMBL:Q9CCD9,NCBI_GP:CAC31304.1;Name=CAC31304.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein TR:O06231 (EMBL:Z95388) (118 aa)%3B Fasta score E(): 1.3e-12%2C 50.4%25 identity in 129 aa overlap. Contains a possible membrane spanning hydrophobic domain.;gbkey=CDS;gene=ML0923;product=possible membrane protein;protein_id=CAC31304.1;transl_table=11
AL450380.1	EMBL	pseudogene	1092696	1093050	.	-	.	ID=gene-ML0924;Name=ML0924;gbkey=Gene;gene=ML0924;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1092696	1093050	.	-	0	ID=cds-ML0924;Parent=gene-ML0924;Note=Possible pseudogene of M. tuberculosis orthologue Rv2143 (Best blastx score 106);gbkey=CDS;gene=ML0924;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	1093035	1094016	.	-	.	ID=id-AL450380.1:1093035..1094016;Note=Dispersed repeat%2C RLEP%2C copy 12;gbkey=repeat_region
AL450380.1	EMBL	ribosome_entry_site	1094364	1094369	.	+	.	ID=id-AL450380.1:1094364..1094369;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1094376	1095812	.	+	.	ID=gene-glnA;Name=glnA;gbkey=Gene;gene=glnA;gene_biotype=protein_coding;gene_synonym=ML0925
AL450380.1	EMBL	CDS	1094376	1095812	.	+	0	ID=cds-CAC31306.1;Parent=gene-glnA;Dbxref=GOA:Q9CCD8,InterPro:IPR001637,InterPro:IPR004809,InterPro:IPR008146,InterPro:IPR008147,InterPro:IPR014746,InterPro:IPR027302,InterPro:IPR027303,UniProtKB/TrEMBL:Q9CCD8,NCBI_GP:CAC31306.1;Name=CAC31306.1;Note=Highly similar to many glutamine synthetases (EC 6.3.1.2) including examples from: Mycobacterium tuberculosis SW:GLN1_MYCTU (Q10377) (478 aa)%3B Fasta score E(): 0%2C 91.8%25 identity in 478 aa overlap and Salmonella typhimurium SW:GLNA_SALTY (P06201) (468 aa)%3B Fasta score E(): 0%2C 51.5%25 identity in 474 aa overlap. Contains Pfam match to entry PF00120 gln-synt%2C Glutamine synthetase. Contains PS00182 Glutamine synthetase class-I adenylation site. Contains PS00180 Glutamine synthetase signature 1. Contains PS00181 Glutamine synthetase putative ATP-binding region signature.%3B~Similar to ML1631;gbkey=CDS;gene=glnA;product=glutamine synthase class I (EC 6.3.1.2).;protein_id=CAC31306.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1094430	1095515	.	+	.	ID=id-glnA;Note=Pfam match to entry PF00120 gln-synt%2C Glutamine synthetase%2C score 700.60%2C E-value 1.4e-222;gbkey=misc_feature;gene=glnA
AL450380.1	EMBL	sequence_feature	1094532	1094588	.	+	.	ID=id-glnA-2;Note=PS00180 Glutamine synthetase signature 1;gbkey=misc_feature;gene=glnA
AL450380.1	EMBL	sequence_feature	1095168	1095215	.	+	.	ID=id-glnA-3;Note=PS00181 Glutamine synthetase putative ATP-binding region signature;gbkey=misc_feature;gene=glnA
AL450380.1	EMBL	sequence_feature	1095555	1095593	.	+	.	ID=id-glnA-4;Note=PS00182 Glutamine synthetase class-I adenylation site;gbkey=misc_feature;gene=glnA
AL450380.1	EMBL	gene	1096064	1096432	.	-	.	ID=gene-ML0926;Name=ML0926;gbkey=Gene;gene=ML0926;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1096064	1096432	.	-	0	ID=cds-CAC31307.1;Parent=gene-ML0926;Dbxref=UniProtKB/TrEMBL:Q9CCD7,NCBI_GP:CAC31307.1;Name=CAC31307.1;Note=Weakly similar%2C in parts%2C to Mycobacterium tuberculosis SW:Y940_MYCTU (P71569) (288 aa)%3B Fasta score E(): 0.0071%2C 30.4%25 identity in 112 aa overlap.;gbkey=CDS;gene=ML0926;product=hypothetical protein;protein_id=CAC31307.1;transl_table=11
AL450380.1	EMBL	gene	1096524	1096832	.	-	.	ID=gene-ML0927;Name=ML0927;gbkey=Gene;gene=ML0927;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1096524	1096832	.	-	0	ID=cds-CAC31308.1;Parent=gene-ML0927;Dbxref=UniProtKB/TrEMBL:Q9CCD6,NCBI_GP:CAC31308.1;Name=CAC31308.1;Note=unknown.;gbkey=CDS;gene=ML0927;product=hypothetical protein;protein_id=CAC31308.1;transl_table=11
AL450380.1	EMBL	repeat_region	1096810	1097734	.	+	.	ID=id-AL450380.1:1096810..1097734;Note=Dispersed repeat%2C RLEP%2C copy 13;gbkey=repeat_region
AL450380.1	EMBL	ribosome_entry_site	1096839	1096842	.	-	.	ID=id-AL450380.1:1096839..1096842;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1098053	1098337	.	+	.	ID=gene-ML0928;Name=ML0928;gbkey=Gene;gene=ML0928;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1098053	1098337	.	+	0	ID=cds-CAC31309.1;Parent=gene-ML0928;Dbxref=UniProtKB/TrEMBL:Q9CCD5,NCBI_GP:CAC31309.1;Name=CAC31309.1;Note=unknown function.;gbkey=CDS;gene=ML0928;product=hypothetical protein;protein_id=CAC31309.1;transl_table=11
AL450380.1	EMBL	pseudogene	1098587	1099186	.	+	.	ID=gene-mgtC;Name=mgtC;gbkey=Gene;gene=mgtC;gene_biotype=pseudogene;gene_synonym=ML0929;pseudo=true
AL450380.1	EMBL	CDS	1098587	1099186	.	+	0	ID=cds-mgtC;Parent=gene-mgtC;Note=Possible pseudogene of M. tuberculosis orthologue mgtC (Best blastx score 171);gbkey=CDS;gene=mgtC;product=probable magnesium transport ATPase protein C (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1099217	1100061	.	-	.	ID=gene-ML0930;Name=ML0930;gbkey=Gene;gene=ML0930;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1099217	1100061	.	-	0	ID=cds-ML0930;Parent=gene-ML0930;Note=Possible pseudogene of M. tuberculosis orthologue Rv1812c (Best blastx score 260);gbkey=CDS;gene=ML0930;product=probable dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1100314	1101169	.	+	.	ID=gene-ML0931;Name=ML0931;gbkey=Gene;gene=ML0931;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1100314	1101169	.	+	0	ID=cds-ML0931;Parent=gene-ML0931;Note=Possible pseudogene of M. tuberculosis orthologue Rv1814 (Best blastx score 379);gbkey=CDS;gene=ML0931;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1101352	1101937	.	+	.	ID=gene-ML0932;Name=ML0932;gbkey=Gene;gene=ML0932;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1101352	1101937	.	+	0	ID=cds-ML0932;Parent=gene-ML0932;Note=Possible pseudogene of M. tuberculosis orthologue Rv1815 (Best blastx score 237);gbkey=CDS;gene=ML0932;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1102568	1103266	.	+	.	ID=gene-ML0933;Name=ML0933;gbkey=Gene;gene=ML0933;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1102568	1103266	.	+	0	ID=cds-ML0933;Parent=gene-ML0933;Note=Possible pseudogene of M. tuberculosis orthologue Rv1816 (Best blastx score 526);gbkey=CDS;gene=ML0933;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1103994	1105279	.	+	.	ID=gene-ML0934;Name=ML0934;gbkey=Gene;gene=ML0934;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1103994	1105279	.	+	0	ID=cds-ML0934;Parent=gene-ML0934;Note=Possible pseudogene of M. tuberculosis orthologue Rv1817 (Best blastx score 395);gbkey=CDS;gene=ML0934;product=flavoprotein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	1106108	1106128	.	-	.	ID=id-AL450380.1:1106108..1106128;Note=21 bp sequence found at 3'-ends of copies 2%2C 3%2C 4 and 6 of LEPREP;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	1106129	1108511	.	-	.	ID=id-AL450380.1:1106129..1108511;Note=Dispersed repeat%2C LEPREP%2C copy 3;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	1106312	1106410	.	-	.	ID=gene-ML0935;Name=ML0935;gbkey=Gene;gene=ML0935;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1106312	1106410	.	-	0	ID=cds-ML0935;Parent=gene-ML0935;Note=Similar to Agrobacterium tumefaciens transposase TR:Q44454 (EMBL:Z18270) (366 aa) fasta scores: E(): 0.0002%2C 51.5%25 id in 33 aa%2C and to Pseudomonas putida transposase tnpa1 TR:Q9R9U9 (EMBL:AJ245436) (355 aa) fasta scores: E(): 0.00088%2C 48.5%25 id in 33 aa;gbkey=CDS;gene=ML0935;pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1106679	1107822	.	-	.	ID=gene-ML0936;Name=ML0936;gbkey=Gene;gene=ML0936;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1106679	1107822	.	-	0	ID=cds-ML0936;Parent=gene-ML0936;Note=Similar to many e.g. Cryphonectria parasitica (Chesnut blight fungus) putative maturase TR:AAF27656 (EMBL:AF218567) (778 aa) fasta scores: E(): 7.8e-11%2C 29.2%25 id in 216 aa;gbkey=CDS;gene=ML0936;product=putative group II intron maturase-related protein;pseudo=true;transl_table=11
AL450380.1	EMBL	stem_loop	1107142	1107195	.	-	.	ID=id-ML0936;gbkey=stem_loop;gene=ML0936;pseudo=true
AL450380.1	EMBL	pseudogene	1108027	1108166	.	-	.	ID=gene-ML0937;Name=ML0937;gbkey=Gene;gene=ML0937;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1108027	1108166	.	-	0	ID=cds-ML0937;Parent=gene-ML0937;Note=Similar to Pseudomonas putida transposase tnpa1 TR:Q9R9U9 (EMBL:AJ245436) (355 aa) fasta scores: E(): 3.4e-05%2C 47.8%25 id in 46 aa%2C and to Agrobacterium tumefaciens transposase TR:Q44454 (EMBL:Z18270) (366 aa) fasta scores: E(): 0.00026%2C 41.3%25 id in 46 aa;gbkey=CDS;gene=ML0937;pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	1108512	1108706	.	-	.	ID=id-AL450380.1:1108512..1108706;Note=195 bp sequence found at 5'-end of copies 1 and 3 of LEPREP;gbkey=repeat_region
AL450380.1	EMBL	gene	1109892	1110188	.	+	.	ID=gene-ML0938;Name=ML0938;gbkey=Gene;gene=ML0938;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1109892	1110188	.	+	0	ID=cds-CAC31319.1;Parent=gene-ML0938;Dbxref=UniProtKB/TrEMBL:Q9CCD4,NCBI_GP:CAC31319.1;Name=CAC31319.1;Note=unknown.;gbkey=CDS;gene=ML0938;product=hypothetical protein;protein_id=CAC31319.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1110178	1110183	.	+	.	ID=id-ML0938;Parent=gene-ML0938;gbkey=regulatory;gene=ML0938;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1110185	1110427	.	+	.	ID=gene-ML0939;Name=ML0939;gbkey=Gene;gene=ML0939;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1110185	1110427	.	+	0	ID=cds-CAC31320.1;Parent=gene-ML0939;Dbxref=UniProtKB/TrEMBL:Q9CCD3,NCBI_GP:CAC31320.1;Name=CAC31320.1;Note=unknown.;gbkey=CDS;gene=ML0939;product=hypothetical protein;protein_id=CAC31320.1;transl_table=11
AL450380.1	EMBL	pseudogene	1110639	1110821	.	+	.	ID=gene-ML0940;Name=ML0940;gbkey=Gene;gene=ML0940;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1110639	1110821	.	+	0	ID=cds-ML0940;Parent=gene-ML0940;Note=Possible pseudogene of M. tuberculosis orthologue Rv1115 (Best blastx score 139);gbkey=CDS;gene=ML0940;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1111222	1111510	.	+	.	ID=gene-ML0941;Name=ML0941;gbkey=Gene;gene=ML0941;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1111222	1111510	.	+	0	ID=cds-ML0941;Parent=gene-ML0941;Note=Possible pseudogene of M. tuberculosis orthologue Rv1117 (Best blastx score 151);gbkey=CDS;gene=ML0941;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1111588	1112380	.	-	.	ID=gene-ML0942;Name=ML0942;gbkey=Gene;gene=ML0942;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1111588	1112380	.	-	0	ID=cds-ML0942;Parent=gene-ML0942;Note=Possible pseudogene of M. tuberculosis orthologue Rv1118c (Best blastx score 257);gbkey=CDS;gene=ML0942;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1112745	1114125	.	+	.	ID=gene-zwf;Name=zwf;gbkey=Gene;gene=zwf;gene_biotype=pseudogene;gene_synonym=ML0943;pseudo=true
AL450380.1	EMBL	CDS	1112745	1114125	.	+	0	ID=cds-zwf;Parent=gene-zwf;Note=Possible pseudogene of M. tuberculosis orthologue zwf (Best blastx score 420);gbkey=CDS;gene=zwf;product=glucose-6-phosphate 1-dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1114160	1115169	.	+	.	ID=gene-gnd2;Name=gnd2;gbkey=Gene;gene=gnd2;gene_biotype=pseudogene;gene_synonym=ML0944;pseudo=true
AL450380.1	EMBL	CDS	1114160	1115169	.	+	0	ID=cds-gnd2;Parent=gene-gnd2;Note=Possible pseudogene of M. tuberculosis orthologue gnd2 (Best blastx score 395);gbkey=CDS;gene=gnd2;product=6-phosphogluconate dehydrogenase (Gram +) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1115197	1116007	.	-	.	ID=gene-ML0945;Name=ML0945;gbkey=Gene;gene=ML0945;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1115197	1116007	.	-	0	ID=cds-ML0945;Parent=gene-ML0945;Note=Possible pseudogene of M. tuberculosis orthologue bpoB (Best blastx score 308);gbkey=CDS;gene=ML0945;product=possible non-heme bromoperoxidase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1116225	1116229	.	+	.	ID=id-AL450380.1:1116225..1116229;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1116230	1116553	.	+	.	ID=gene-ML0946;Name=ML0946;gbkey=Gene;gene=ML0946;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1116230	1116553	.	+	0	ID=cds-CAC31327.1;Parent=gene-ML0946;Dbxref=UniProtKB/TrEMBL:Q7AQC3,NCBI_GP:CAC31327.1;Name=CAC31327.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:O05568 (EMBL:Z94723) (107 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 107 aa overlap. Also similar to Mycobacterium tuberculosis TR:O06818 (EMBL:Z95844) (491 aa)%3B Fasta score E(): 0.00066%2C 38.7%25 identity in 106 aa overlap%2C a proposed member of the PGRS-family. Contains Pfam match to entry PF00934 PE%2C PE family.;gbkey=CDS;gene=ML0946;product=conserved hypothetical protein;protein_id=CAC31327.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1116236	1116526	.	+	.	ID=id-ML0946;Note=Pfam match to entry PF00934 PE%2C PE family%2C score 0.70%2C E-value 6.2e-05;gbkey=misc_feature;gene=ML0946
AL450380.1	EMBL	gene	1117520	1117777	.	-	.	ID=gene-ML0947;Name=ML0947;gbkey=Gene;gene=ML0947;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1117520	1117777	.	-	0	ID=cds-CAC31328.1;Parent=gene-ML0947;Dbxref=UniProtKB/TrEMBL:Q9CCD2,NCBI_GP:CAC31328.1;Name=CAC31328.1;Note=unknown function.;gbkey=CDS;gene=ML0947;product=hypothetical protein;protein_id=CAC31328.1;transl_table=11
AL450380.1	EMBL	pseudogene	1118089	1118537	.	+	.	ID=gene-ML0948;Name=ML0948;gbkey=Gene;gene=ML0948;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1118089	1118537	.	+	0	ID=cds-ML0948;Parent=gene-ML0948;Note=Possible pseudogene of a protein of unknown function from Streptomyces coelicolor TR:Q9X7R8(EMBL:AL049863).;gbkey=CDS;gene=ML0948;product=hypothetical protein (pseudogene).;pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1118730	1119143	.	-	.	ID=gene-ML0949;Name=ML0949;gbkey=Gene;gene=ML0949;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1118730	1119143	.	-	0	ID=cds-CAC31330.1;Parent=gene-ML0949;Dbxref=GOA:Q9CCD1,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR015893,UniProtKB/TrEMBL:Q9CCD1,NCBI_GP:CAC31330.1;Name=CAC31330.1;Note=unknown function.;gbkey=CDS;gene=ML0949;product=hypothetical protein;protein_id=CAC31330.1;transl_table=11
AL450380.1	EMBL	gene	1119155	1119355	.	-	.	ID=gene-ML0950;Name=ML0950;gbkey=Gene;gene=ML0950;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1119155	1119355	.	-	0	ID=cds-CAC31331.1;Parent=gene-ML0950;Dbxref=UniProtKB/TrEMBL:Q9CCD0,NCBI_GP:CAC31331.1;Name=CAC31331.1;Note=unknown function.;gbkey=CDS;gene=ML0950;product=hypothetical protein;protein_id=CAC31331.1;transl_table=11
AL450380.1	EMBL	pseudogene	1119349	1120281	.	+	.	ID=gene-ML0951;Name=ML0951;gbkey=Gene;gene=ML0951;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1119349	1120281	.	+	0	ID=cds-ML0951;Parent=gene-ML0951;Note=Possible pseudogene of M. tuberculosis orthologue ephC (Best blastx score 389);gbkey=CDS;gene=ML0951;product=possible epoxide hydrolase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1120289	1121493	.	+	.	ID=gene-ML0952;Name=ML0952;gbkey=Gene;gene=ML0952;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1120289	1121493	.	+	0	ID=cds-ML0952;Parent=gene-ML0952;Note=Possible pseudogene of M. tuberculosis orthologue Rv1125 (Best blastx score 383);gbkey=CDS;gene=ML0952;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1121893	1122132	.	+	.	ID=gene-ML0953;Name=ML0953;gbkey=Gene;gene=ML0953;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1121893	1122132	.	+	0	ID=cds-CAC31334.1;Parent=gene-ML0953;Dbxref=UniProtKB/TrEMBL:Q9CCC9,NCBI_GP:CAC31334.1;Name=CAC31334.1;Note=unknown function.;gbkey=CDS;gene=ML0953;product=hypothetical protein;protein_id=CAC31334.1;transl_table=11
AL450380.1	EMBL	pseudogene	1122419	1123020	.	-	.	ID=gene-ML0954;Name=ML0954;gbkey=Gene;gene=ML0954;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1122419	1123020	.	-	0	ID=cds-ML0954;Parent=gene-ML0954;Note=Possible pseudogene of M. tuberculosis orthologue Rv1126c (Best blastx score 364). Note the N-terminal region of this putative pseudogene was previously published TR:O05567.;gbkey=CDS;gene=ML0954;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1123017	1124822	.	-	.	ID=gene-ppdK;Name=ppdK;gbkey=Gene;gene=ppdK;gene_biotype=protein_coding;gene_synonym=ML0955
AL450380.1	EMBL	CDS	1123017	1124822	.	-	0	ID=cds-CAC31336.1;Parent=gene-ppdK;Dbxref=GOA:Q7AQC2,InterPro:IPR002192,InterPro:IPR008279,InterPro:IPR010121,InterPro:IPR013815,InterPro:IPR013816,UniProtKB/TrEMBL:Q7AQC2,NCBI_GP:CAC31336.1;Name=CAC31336.1;Note=Identical to the previously sequenced Mycobacterium leprae pyruvate%2C phosphate dikinase TR:O05566 (EMBL:Z94723) (601 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 601 aa overlap. Also highly similar to pyruvate%2C phosphate dikinases from Mycobacterium tuberculosis TR:O06579 (EMBL:Z95585) (490 aa)%3B Fasta score E(): 0%2C 71.8%25 identity in 478 aa overlap and Clostridium symbiosumSW:PODK_CLOSY (P22983) (873 aa)%3B Fasta score E(): 0%2C 35.2%25 identity in 537 aa overlap. Contains Pfam match to entry PF00391 PEP-utilizers%2C PEP-utilizing enzymes. Contains Pfam match to entry PF01326 PPDK_N_term%2C Pyruvate phosphate dikinase%2C PEP/pyruvate binding domain.;gbkey=CDS;gene=ppdK;product=pyruvate%2C phosphate dikinase;protein_id=CAC31336.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1123278	1123484	.	-	.	ID=id-ppdK;Note=Pfam match to entry PF00391 PEP-utilizers%2C PEP-utilizing enzymes%2C score 57.50%2C E-value 5.9e-16;gbkey=misc_feature;gene=ppdK
AL450380.1	EMBL	sequence_feature	1123659	1124621	.	-	.	ID=id-ppdK-2;Note=Pfam match to entry PF01326 PPDK_N_term%2C Pyruvate phosphate dikinase%2C PEP/pyruvate binding domain%2C score 484.20%2C E-value 1.1e-141;gbkey=misc_feature;gene=ppdK
AL450380.1	EMBL	gene	1124867	1125376	.	+	.	ID=gene-ML0956;Name=ML0956;gbkey=Gene;gene=ML0956;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1124867	1125376	.	+	0	ID=cds-CAC31337.1;Parent=gene-ML0956;Dbxref=InterPro:IPR011637,UniProtKB/TrEMBL:Q9CCC8,NCBI_GP:CAC31337.1;Name=CAC31337.1;Note=Almost identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:O05565 (EMBL:Z94723) (214 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 169 aa overlap. Also highly similar to Streptomyces coelicolor putative membrane protein TR:Q9RKN9 (EMBL:AL133220) (180 aa)%3B Fasta score E(): 2.8e-13%2C 43.8%25 identity in 137 aa overlap. Contains multiple possible membrane spanning hydrophobic domains and a possible N-terminal signal sequence.;gbkey=CDS;gene=ML0956;product=putative integral membrane protein.;protein_id=CAC31337.1;transl_table=11
AL450380.1	EMBL	gene	1125854	1126228	.	-	.	ID=gene-ML0957;Name=ML0957;gbkey=Gene;gene=ML0957;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1125854	1126228	.	-	0	ID=cds-CAC31338.1;Parent=gene-ML0957;Dbxref=UniProtKB/TrEMBL:Q9CCC7,NCBI_GP:CAC31338.1;Name=CAC31338.1;Note=unknown function.;gbkey=CDS;gene=ML0957;product=hypothetical protein;protein_id=CAC31338.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1126231	1126237	.	-	.	ID=id-AL450380.1:1126231..1126237;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1126239	1126670	.	+	.	ID=gene-ML0958;Name=ML0958;gbkey=Gene;gene=ML0958;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1126239	1126670	.	+	0	ID=cds-CAC31339.1;Parent=gene-ML0958;Dbxref=UniProtKB/TrEMBL:Q9CCC6,NCBI_GP:CAC31339.1;Name=CAC31339.1;Note=possible membrane protein which contains a potential membrane spanning hydrophobic domain.;gbkey=CDS;gene=ML0958;product=putative membrane protein;protein_id=CAC31339.1;transl_table=11
AL450380.1	EMBL	gene	1126912	1127265	.	+	.	ID=gene-ML0959;Name=ML0959;gbkey=Gene;gene=ML0959;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1126912	1127265	.	+	0	ID=cds-CAC31340.1;Parent=gene-ML0959;Dbxref=UniProtKB/TrEMBL:Q9CCC5,NCBI_GP:CAC31340.1;Name=CAC31340.1;Note=unknown function.;gbkey=CDS;gene=ML0959;product=hypothetical protein;protein_id=CAC31340.1;transl_table=11
AL450380.1	EMBL	pseudogene	1127277	1127736	.	+	.	ID=gene-ML0960;Name=ML0960;gbkey=Gene;gene=ML0960;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1127277	1127736	.	+	0	ID=cds-ML0960;Parent=gene-ML0960;Note=Possible pseudogene of M. tuberculosis orthologue Rv1132 (Best blastx score 183);gbkey=CDS;gene=ML0960;product=possible membrane transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1127777	1130059	.	-	.	ID=gene-metE;Name=metE;gbkey=Gene;gene=metE;gene_biotype=protein_coding;gene_synonym=ML0961
AL450380.1	EMBL	CDS	1127777	1130059	.	-	0	ID=cds-CAC31342.1;Parent=gene-metE;Dbxref=GOA:O05564,InterPro:IPR002629,InterPro:IPR006276,InterPro:IPR013215,NCBI_GP:CAC31342.1;Name=CAC31342.1;Note=Identical to the previously sequenced Mycobacterium leprae 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) SW:METE_MYCLE (O05564) (760 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 760 aa overlap. Also highly similar to MetE orthologues from Mycobacterium tuberculosis SW:METE_MYCTU (O06584) (759 aa)%3B Fasta score E(): 0%2C 85.0%25 identity in 759 aa overlap and Escherichia coli SW:METE_ECOLI (P25665) (752 aa)%3B Fasta score E(): 0%2C 47.5%25 identity in 754 aa overlap. Contains Pfam match to entry PF01717 Methionine_synt%2C Methionine synthase%2C vitamin-B12 independent.;gbkey=CDS;gene=metE;product=5-methyltetrahydropteroyltriglutamate-homocysteinmethyltransferase.;protein_id=CAC31342.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1127795	1128766	.	-	.	ID=id-metE;Note=Pfam match to entry PF01717 Methionine_synt%2C Methionine synthase%2C vitamin-B12 independent%2C score 798.90%2C E-value 1.9e-236;gbkey=misc_feature;gene=metE
AL450380.1	EMBL	pseudogene	1130782	1131101	.	-	.	ID=gene-ML0962;Name=ML0962;gbkey=Gene;gene=ML0962;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1130782	1131101	.	-	0	ID=cds-ML0962;Parent=gene-ML0962;Note=Possible pseudogene of M. tuberculosis orthologue putative transposase Rv1313c (Best blastx score 152);gbkey=CDS;gene=ML0962;product=possible transposase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1131298	1131762	.	+	.	ID=gene-ML0963;Name=ML0963;gbkey=Gene;gene=ML0963;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1131298	1131762	.	+	0	ID=cds-CAC31344.1;Parent=gene-ML0963;Dbxref=UniProtKB/TrEMBL:Q9CCC4,NCBI_GP:CAC31344.1;Name=CAC31344.1;Note=unknown function.;gbkey=CDS;gene=ML0963;product=hypothetical protein;protein_id=CAC31344.1;transl_table=11
AL450380.1	EMBL	gene	1131800	1132057	.	+	.	ID=gene-ML0964;Name=ML0964;gbkey=Gene;gene=ML0964;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1131800	1132057	.	+	0	ID=cds-CAC31345.1;Parent=gene-ML0964;Dbxref=UniProtKB/TrEMBL:Q9CCC3,NCBI_GP:CAC31345.1;Name=CAC31345.1;Note=unknown function.;gbkey=CDS;gene=ML0964;product=hypothetical protein;protein_id=CAC31345.1;transl_table=11
AL450380.1	EMBL	pseudogene	1133793	1134785	.	-	.	ID=gene-ML0965;Name=ML0965;gbkey=Gene;gene=ML0965;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1133793	1134785	.	-	0	ID=cds-ML0965;Parent=gene-ML0965;Note=Possible pseudogene of M. tuberculosis orthologue Rv1138c (Best blastx score 217);gbkey=CDS;gene=ML0965;product=possible conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1134796	1135289	.	-	.	ID=gene-ML0966;Name=ML0966;gbkey=Gene;gene=ML0966;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1134796	1135289	.	-	0	ID=cds-ML0966;Parent=gene-ML0966;Note=Possible pseudogene of M. tuberculosis orthologue Rv1139c (Best blastx score 225);gbkey=CDS;gene=ML0966;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1135310	1136331	.	-	.	ID=gene-ML0967;Name=ML0967;gbkey=Gene;gene=ML0967;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1135310	1136331	.	-	0	ID=cds-ML0967;Parent=gene-ML0967;Note=Possible pseudogene of M. tuberculosis orthologue pks10 and pks11 (Best blastx score 288);gbkey=CDS;gene=ML0967;product=polyketide synthase (chalcone synthase-like) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1136837	1137335	.	+	.	ID=gene-ML0968;Name=ML0968;gbkey=Gene;gene=ML0968;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1136837	1137335	.	+	0	ID=cds-ML0968;Parent=gene-ML0968;Note=Possible pseudogene of M. tuberculosis orthologue Rv1140 (Best blastx score 297);gbkey=CDS;gene=ML0968;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1137505	1138598	.	+	.	ID=gene-ML0969;Name=ML0969;gbkey=Gene;gene=ML0969;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1137505	1138598	.	+	0	ID=cds-ML0969;Parent=gene-ML0969;Note=Possible pseudogene of M. tuberculosis orthologue mcr (Best blastx score 1092);gbkey=CDS;gene=ML0969;product=[alpha]-methyl acyl-CoA racemase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1138624	1139418	.	+	.	ID=gene-ML0970;Name=ML0970;gbkey=Gene;gene=ML0970;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1138624	1139418	.	+	0	ID=cds-ML0970;Parent=gene-ML0970;Note=Possible pseudogene of M. tuberculosis orthologue Rv1144 (Best blastx score 282);gbkey=CDS;gene=ML0970;product=short-chain alcohol dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	1139035	1139074	.	+	.	ID=id-ML0970;Note=4 tandem copies of 10 bp direct repeat%2C Consensus%2C TTATTAATAA;gbkey=repeat_region;gene=ML0970;pseudo=true
AL450380.1	EMBL	pseudogene	1140053	1140906	.	+	.	ID=gene-ML0971;Name=ML0971;gbkey=Gene;gene=ML0971;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1140053	1140906	.	+	0	ID=cds-ML0971;Parent=gene-ML0971;Note=Possible pseudogene of M. tuberculosis orthologue Rv1145 (Best blastx score 305);gbkey=CDS;gene=ML0971;product=probable drug transport protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1140947	1141214	.	+	.	ID=gene-ML0972;Name=ML0972;gbkey=Gene;gene=ML0972;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1140947	1141214	.	+	0	ID=cds-ML0972;Parent=gene-ML0972;Note=Possible pseudogene of M. tuberculosis orthologue Rv1146 (Best blastx score 131);gbkey=CDS;gene=ML0972;product=probable drug transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1141223	1141417	.	+	.	ID=gene-ML0973;Name=ML0973;gbkey=Gene;gene=ML0973;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1141223	1141417	.	+	0	ID=cds-ML0973;Parent=gene-ML0973;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv1147 TR:O06547.%3B~Possible pseudogene of M. tuberculosis orthologue Rv1147.;gbkey=CDS;gene=ML0973;product=hypothetical protein (pseudogene).;pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	1141414	1142430	.	+	.	ID=id-AL450380.1:1141414..1142430;Note=REPLEP region 5%2C 5'-end most similar to REPLEP 6%3B 3'-end most similar to REPLEP 1%2C 4 and 6;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	1141484	1141504	.	+	.	ID=id-AL450380.1:1141484..1141504;Note=21 bp repeat found at 5'-end of REPLEP copies 1%2C 2%2C 5%2C 6 and 11;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	1141505	1142385	.	+	.	ID=id-AL450380.1:1141505..1142385;Note=Dispersed repeat%2C REPLEP%2C copy 5. Ends of element show similarity%2C bases 1-95 with 783-880 and vice-versa%2C 68%25 identity;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	1142386	1142430	.	+	.	ID=id-AL450380.1:1142386..1142430;Note=45 bp REPLEP-associated sequence;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	1142459	1143286	.	-	.	ID=gene-ML0974;Name=ML0974;gbkey=Gene;gene=ML0974;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1142459	1143286	.	-	0	ID=cds-ML0974;Parent=gene-ML0974;Note=Possible pseudogene of M. tuberculosis orthologue Rv2751 (Best blastx score 348);gbkey=CDS;gene=ML0974;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1143307	1144159	.	-	.	ID=gene-ML0975;Name=ML0975;gbkey=Gene;gene=ML0975;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1143307	1144159	.	-	0	ID=cds-ML0975;Parent=gene-ML0975;Note=Possible pseudogene of M. tuberculosis orthologue Rv2750 (Best blastx score 216);gbkey=CDS;gene=ML0975;product=putative dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1144200	1144442	.	-	.	ID=gene-ML0976;Name=ML0976;gbkey=Gene;gene=ML0976;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1144200	1144442	.	-	0	ID=cds-ML0976;Parent=gene-ML0976;Note=Possible pseudogene of M. tuberculosis orthologue Rv2749 (Best blastx score 131);gbkey=CDS;gene=ML0976;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1144496	1147156	.	+	.	ID=gene-ftsK;Name=ftsK;gbkey=Gene;gene=ftsK;gene_biotype=protein_coding;gene_synonym=ML0977
AL450380.1	EMBL	CDS	1144496	1147156	.	+	0	ID=cds-CAC31358.1;Parent=gene-ftsK;Dbxref=GOA:O05560,InterPro:IPR002543,InterPro:IPR003593,InterPro:IPR018541,InterPro:IPR025199,InterPro:IPR027417,NCBI_GP:CAC31358.1;Name=CAC31358.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:O05560 (EMBL:Z94723) (886 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 886 aa overlap. Also highly similar to many proteins involved in cell division e.g. Escherichia coli SW:FTSK_ECOLI (P46889) (1329 aa)%3B Fasta score E(): 0%2C 43.9%25 identity in 531 aa overlap and Mycobacterium tuberculosis TR:O33290 (EMBL:AL008967) (883 aa)%3B Fasta score E(): 0%2C 78.1%25 identity in 885 aa overlap. Contains multiple possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF01580 FtsK_SpoIIIE%2C FtsK/SpoIIIE family. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ftsK;product=Cell division protein;protein_id=CAC31358.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1145987	1146592	.	+	.	ID=id-ftsK;Note=Pfam match to entry PF01580 FtsK_SpoIIIE%2C FtsK/SpoIIIE family%2C score 317.70%2C E-value 1.4e-91;gbkey=misc_feature;gene=ftsK
AL450380.1	EMBL	sequence_feature	1146119	1146142	.	+	.	ID=id-ftsK-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ftsK
AL450380.1	EMBL	gene	1147166	1147708	.	-	.	ID=gene-ML0978;Name=ML0978;gbkey=Gene;gene=ML0978;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1147166	1147708	.	-	0	ID=cds-CAC31359.1;Parent=gene-ML0978;Dbxref=GOA:Q7AQC1,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:Q7AQC1,NCBI_GP:CAC31359.1;Name=CAC31359.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:O05559 (EMBL:Z94723) (180 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 180 aa overlap. Also similar to several acetyltransferases including: Escherichia coli amino-acid acetyltransferase (EC 2.3.1.1) SW:ARGA_ECOLI (P08205) (443 aa)%3B Fasta score E(): 0.0013%2C 26.8%25 identity in 123 aa overlap and Streptomyces coelicolor putative acetyltransferase TR:Q9X8N2 (EMBL:AL049628) (169 aa)%3B Fasta score E(): 0%2C 59.8%25 identity in 164 aa overlap. Highly similar to Mycobacterium tuberculosis hypothetical protein Rv2747 TR:O33289 (EMBL:AL008967) (174 aa)%3B Fasta score E(): 0%2C 86.2%25 identity in 174 aa overlap . Contains Pfam match to entry PF00583 Acetyltransf%2C Acetyltransferase (GNAT) family.;gbkey=CDS;gene=ML0978;product=putative acetyltransferase;protein_id=CAC31359.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1147307	1147657	.	-	.	ID=id-ML0978;Note=Pfam match to entry PF00583 Acetyltransf%2C Acetyltransferase (GNAT) family%2C score 36.30%2C E-value 6.8e-07;gbkey=misc_feature;gene=ML0978
AL450380.1	EMBL	gene	1147775	1148356	.	+	.	ID=gene-ML0979;Name=ML0979;gbkey=Gene;gene=ML0979;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1147775	1148356	.	+	0	ID=cds-CAC31360.1;Parent=gene-ML0979;Dbxref=GOA:Q7AQC0,InterPro:IPR000462,InterPro:IPR004570,UniProtKB/TrEMBL:Q7AQC0,NCBI_GP:CAC31360.1;Name=CAC31360.1;Note=Identical to the previously sequenced Mycobacterium leprae TR:Q49839 (EMBL:U00019) (193 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 193 aa overlap. Also highly similar to many phosphatidylglycerophosphate synthases including: Mycobacterium tuberculosis Rv2746c TR:O33288 (EMBL:AL008967) (209 aa)%3B Fasta score E(): 0%2C 77.1%25 identity in 188 aa overlap and Bacillus subtilis SW:PGSA_BACSU (P46322) (193 aa)%3B Fasta score E(): 5.6e-17%2C 35.8%25 identity in 193 aa overlap. Contains multiple possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF01066 CDP-OH_P_transf%2C CDP-alcohol phosphatidyltransferase. Contains PS00379 CDP-alcohol phosphatidyltransferases signature.;gbkey=CDS;gene=ML0979;product=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)(phosphatidylglycerophosphate synthase);protein_id=CAC31360.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1147904	1148326	.	+	.	ID=id-ML0979;Note=Pfam match to entry PF01066 CDP-OH_P_transf%2C CDP-alcohol phosphatidyltransferase%2C score 159.90%2C E-value 4.3e-44;gbkey=misc_feature;gene=ML0979
AL450380.1	EMBL	sequence_feature	1147943	1148011	.	+	.	ID=id-ML0979-2;Note=PS00379 CDP-alcohol phosphatidyltransferases signature;gbkey=misc_feature;gene=ML0979
AL450380.1	EMBL	pseudogene	1148468	1148751	.	+	.	ID=gene-ML0980;Name=ML0980;gbkey=Gene;gene=ML0980;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1148468	1148751	.	+	0	ID=cds-ML0980;Parent=gene-ML0980;gbkey=CDS;gene=ML0980;product=hypothetical protein (pseudogene).;pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1148891	1149719	.	+	.	ID=gene-ML0981;Name=ML0981;gbkey=Gene;gene=ML0981;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1148891	1149719	.	+	0	ID=cds-ML0981;Parent=gene-ML0981;Note=Possible pseudogene of M. tuberculosis orthologue 35kd immunogenic protein 35kd_ag (Best blastx score 624);gbkey=CDS;gene=ML0981;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1149754	1150602	.	+	.	ID=gene-ML0982;Name=ML0982;gbkey=Gene;gene=ML0982;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1149754	1150602	.	+	0	ID=cds-ML0982;Parent=gene-ML0982;Note=Possible pseudogene of M. tuberculosis orthologue Rv2743c (Best blastx score 792);gbkey=CDS;gene=ML0982;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1150700	1150910	.	+	.	ID=gene-ML0983;Name=ML0983;gbkey=Gene;gene=ML0983;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1150700	1150910	.	+	0	ID=cds-ML0983;Parent=gene-ML0983;Note=Possible pseudogene of M. tuberculosis orthologue Rv2742c (Best blastx score 144);gbkey=CDS;gene=ML0983;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1151024	1151518	.	-	.	ID=gene-ML0984;Name=ML0984;gbkey=Gene;gene=ML0984;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1151024	1151518	.	-	0	ID=cds-CAC31365.1;Parent=gene-ML0984;Dbxref=InterPro:IPR013100,UniProtKB/TrEMBL:Q9CCC2,NCBI_GP:CAC31365.1;Name=CAC31365.1;Note=Almost identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49850 (EMBL:U00019) (178 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 149 aa overlap. Also highly similar to Mycobacterium tuberculosis hypothetical protein TR:O33283 (EMBL:AL008967) (149 aa)%3B Fasta score E(): 3e-28%2C 52.0%25 identity in 150 aa overlap.;gbkey=CDS;gene=ML0984;product=conserved hypothetical protein.;protein_id=CAC31365.1;transl_table=11
AL450380.1	EMBL	gene	1151510	1152688	.	+	.	ID=gene-ML0985;Name=ML0985;gbkey=Gene;gene=ML0985;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1151510	1152688	.	+	0	ID=cds-CAC31366.1;Parent=gene-ML0985;Dbxref=GOA:Q7AQB9,InterPro:IPR002213,UniProtKB/TrEMBL:Q7AQB9,NCBI_GP:CAC31366.1;Name=CAC31366.1;Note=Identical to the previously sequenced Mycobacterium leprae possible glycosyl transferase TR:Q49841 (EMBL:Z94723) (392 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 392 aa overlap. Also highly similar to Mycobacterium tuberculosis probable transferase Rv2739c TR:O33282 (EMBL:AL008967) (388 aa)%3B Fasta score E(): 0%2C 80.9%25 identity in 388 aa overlap and Erwinia herbicola SW:CRTX_ERWHE (Q01330) (413 aa)%3B Fasta score E(): 7.5e-07%2C 26.1%25 identity in 410 aa overlap.;gbkey=CDS;gene=ML0985;product=possible glycosyltransferase;protein_id=CAC31366.1;transl_table=11
AL450380.1	EMBL	gene	1152702	1152905	.	+	.	ID=gene-ML0986;Name=ML0986;gbkey=Gene;gene=ML0986;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1152702	1152905	.	+	0	ID=cds-CAC31367.1;Parent=gene-ML0986;Dbxref=InterPro:IPR021408,UniProtKB/TrEMBL:Q9CCC1,NCBI_GP:CAC31367.1;Name=CAC31367.1;Note=Highly similar to proteins of undefined function from Mycobacterium tuberculosis Rv2738c TR:O33281 (EMBL:AL008967) (68 aa)%3B Fasta score E(): 7.9e-24%2C 85.1%25 identity in 67 aa overlap and Streptomyces coelicolor TR:O50484 (EMBL:AL020958) (64 aa)%3B Fasta score E(): 2.5e-08%2C 44.4%25 identity in 63 aa overlap.;gbkey=CDS;gene=ML0986;product=conserved hypothetical protein;protein_id=CAC31367.1;transl_table=11
AL450380.1	EMBL	gene	1153056	1155191	.	+	.	ID=gene-recA;Name=recA;gbkey=Gene;gene=recA;gene_biotype=protein_coding;gene_synonym=ML0987
AL450380.1	EMBL	CDS	1153056	1155191	.	+	0	ID=cds-CAC31368.1;Parent=gene-recA;Dbxref=GOA:P35901,InterPro:IPR003586,InterPro:IPR003587,InterPro:IPR003593,InterPro:IPR004042,InterPro:IPR004860,InterPro:IPR006141,InterPro:IPR013765,InterPro:IPR020584,InterPro:IPR020587,InterPro:IPR020588,InterPro:IPR023400,InterPro:IPR027417,InterPro:IPR027434,InterPro:IPR028992,NCBI_GP:CAC31368.1;Name=CAC31368.1;Note=Identical to the previously sequenced and characterised Mycobacterium leprae RecA protein involved in DNA recombination and the SOS response SW:RECA_MYCLE (P35901) (711 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 711 aa overlap. Also highly similar to many others e.g. Mycobacterium tuberculosis SW:RECA_MYCTU (P26345) (790 aa)%3B Fasta score E(): 0%2C 46.7%25 identity in 814 aa overlap. Note the Mycobacterium leprae RecA protein is known to possess an intron which is self-spliced at the post-translational level. Contains 2 Pfam matches to entry PF00154 recA%2C recA bacterial DNA recombination proteins. Contains PS00321 recA signature. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00881 Protein splicing signature.;gbkey=CDS;gene=recA;product=RecA protein;protein_id=CAC31368.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1153080	1153670	.	+	.	ID=id-recA;Note=Pfam match to entry PF00154 recA%2C recA bacterial DNA recombination proteins%2C score 495.50%2C E-value 5e-146;gbkey=misc_feature;gene=recA
AL450380.1	EMBL	sequence_feature	1153254	1153277	.	+	.	ID=id-recA-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=recA
AL450380.1	EMBL	sequence_feature	1154745	1154768	.	+	.	ID=id-recA-3;Note=PS00881 Protein splicing signature;gbkey=misc_feature;gene=recA
AL450380.1	EMBL	sequence_feature	1154748	1155140	.	+	.	ID=id-recA-4;Note=Pfam match to entry PF00154 recA%2C recA bacterial DNA recombination proteins%2C score 263.10%2C E-value 3.6e-77;gbkey=misc_feature;gene=recA
AL450380.1	EMBL	sequence_feature	1154793	1154819	.	+	.	ID=id-recA-5;Note=PS00321 recA signature;gbkey=misc_feature;gene=recA
AL450380.1	EMBL	gene	1155157	1155672	.	+	.	ID=gene-recX;Name=recX;gbkey=Gene;gene=recX;gene_biotype=protein_coding;gene_synonym=ML0988
AL450380.1	EMBL	CDS	1155157	1155672	.	+	0	ID=cds-CAC31369.1;Parent=gene-recX;Dbxref=GOA:P37859,InterPro:IPR003783,InterPro:IPR011991,NCBI_GP:CAC31369.1;Name=CAC31369.1;Note=Identical to the previously sequenced Mycobacterium leprae putative regulatory protein RecX%2C though to interact with RecA SW:RECX_MYCLE (P37859) (171 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 171 aa overlap. Also highly similar to RecX from Mycobacterium tuberculosis Rv2736c SW:RECX_MYCTU (O33280) (174 aa)%3B Fasta score E(): 0%2C 77.0%25 identity in 174 aa overlap and several others. Note the overlap with upstream recA.;gbkey=CDS;gene=recX;product=putative regulatory protein RecX;protein_id=CAC31369.1;transl_table=11
AL450380.1	EMBL	gene	1155731	1157284	.	+	.	ID=gene-ML0989;Name=ML0989;gbkey=Gene;gene=ML0989;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1155731	1157284	.	+	0	ID=cds-CAC31370.1;Parent=gene-ML0989;Dbxref=GOA:Q49842,InterPro:IPR002792,InterPro:IPR005839,InterPro:IPR006463,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR013848,InterPro:IPR020612,InterPro:IPR023404,InterPro:IPR023970,NCBI_GP:CAC31370.1;Name=CAC31370.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein SW:YR33_MYCLE (Q49842) (516 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 516 aa overlap. Also highly similar to many other proteins of undefined function belonging to the the Pfam UPF0004 family%2C including: Mycobacterium tuberculosis Rv2733c SW:YR33_MYCTU (O33238) (512 aa)%3B Fasta score E(): 0%2C 80.4%25 identity in 509 aa overlap and Bacillus subtilis YMCB_BACSU. Contains Pfam match to entry PF00919 UPF0004%2C Uncharacterized protein family UPF0004. Contains PS01278 Uncharacterized protein family UPF0004 signature.;gbkey=CDS;gene=ML0989;product=conserved hypothetical protein;protein_id=CAC31370.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1155785	1157137	.	+	.	ID=id-ML0989;Note=Pfam match to entry PF00919 UPF0004%2C Uncharacterized protein family UPF0004%2C score 795.30%2C E-value 5e-250;gbkey=misc_feature;gene=ML0989
AL450380.1	EMBL	sequence_feature	1156232	1156294	.	+	.	ID=id-ML0989-2;Note=PS01278 Uncharacterized protein family UPF0004 signature;gbkey=misc_feature;gene=ML0989
AL450380.1	EMBL	gene	1157281	1157910	.	+	.	ID=gene-ML0990;Name=ML0990;gbkey=Gene;gene=ML0990;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1157281	1157910	.	+	0	ID=cds-CAC31371.1;Parent=gene-ML0990;Dbxref=UniProtKB/TrEMBL:Q7AQB8,NCBI_GP:CAC31371.1;Name=CAC31371.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49834 (EMBL:U00019) (209 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 209 aa overlap. Also highly similar to Mycobacterium tuberculosis Rv2732c TR:O33237 (EMBL:Z98209) (204 aa)%3B Fasta score E(): 0%2C 70.6%25 identity in 201 aa overlap. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML0990;product=possible conserved membrane protein;protein_id=CAC31371.1;transl_table=11
AL450380.1	EMBL	pseudogene	1157913	1159287	.	-	.	ID=gene-ML0991;Name=ML0991;gbkey=Gene;gene=ML0991;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1157913	1159287	.	-	0	ID=cds-ML0991;Parent=gene-ML0991;Note=Possible pseudogene of M. tuberculosis orthologue Rv2731 (Best blastx score 491);gbkey=CDS;gene=ML0991;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1159846	1160079	.	-	.	ID=gene-ML0992;Name=ML0992;gbkey=Gene;gene=ML0992;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1159846	1160079	.	-	0	ID=cds-ML0992;Parent=gene-ML0992;Note=Possible pseudogene of M. tuberculosis orthologue pknE (Best blastx score 104);gbkey=CDS;gene=ML0992;product=serine-threonine protein kinase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1160766	1162375	.	+	.	ID=gene-ML0993;Name=ML0993;gbkey=Gene;gene=ML0993;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1160766	1162375	.	+	0	ID=cds-ML0993;Parent=gene-ML0993;Note=Possible pseudogene of M. tuberculosis orthologue Rv2729c (Best blastx score 226);gbkey=CDS;gene=ML0993;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1162614	1162619	.	+	.	ID=id-AL450380.1:1162614..1162619;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1162620	1163318	.	+	.	ID=gene-ML0994;Name=ML0994;gbkey=Gene;gene=ML0994;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1162620	1163318	.	+	0	ID=cds-CAC31375.1;Parent=gene-ML0994;Dbxref=UniProtKB/TrEMBL:Q7AQB7,NCBI_GP:CAC31375.1;Name=CAC31375.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49835 (EMBL:U00019) (232 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 232 aa overlap. Also highly similar to proteins of undefined function from Mycobacterium tuberculosis Rv2728c TR:O33233 (EMBL:Z98209) (231 aa)%3B Fasta score E(): 0%2C 68.5%25 identity in 232 aa overlap and Streptomyces coelicolor TR:O69964 (EMBL:AL022268) (237 aa)%3B Fasta score E(): 1.3e-13%2C 32.9%25 identity in 243 aa overlap.;gbkey=CDS;gene=ML0994;product=conserved hypothetical protein;protein_id=CAC31375.1;transl_table=11
AL450380.1	EMBL	gene	1163315	1164250	.	+	.	ID=gene-miaA;Name=miaA;gbkey=Gene;gene=miaA;gene_biotype=protein_coding;gene_synonym=ML0995
AL450380.1	EMBL	CDS	1163315	1164250	.	+	0	ID=cds-CAC31376.1;Parent=gene-miaA;Dbxref=GOA:P46811,InterPro:IPR002627,InterPro:IPR018022,InterPro:IPR027417,NCBI_GP:CAC31376.1;Name=CAC31376.1;Note=Identical to the previously sequenced Mycobacterium leprae tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) SW:MIAA_MYCLE (P46811) (311 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 311 aa overlap%2C as well as several other IPP transferases e.g. from Mycobacterium tuberculosis SW:MIAA_MYCTU (O33232) (314 aa)%3B Fasta score E(): 0%2C 82.2%25 identity in 314 aa overlap and Escherichia coli SW:MIAA_ECOLI (P16384) (316 aa)%3B Fasta score E(): 2.2e-27%2C 35.5%25 identity in 293 aa overlap. Contains Pfam match to entry PF01715 IPPT%2C IPP transferase.;gbkey=CDS;gene=miaA;product=tRNA [delta](2)-isopentenylpyrophosphate transferase;protein_id=CAC31376.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1163429	1164190	.	+	.	ID=id-miaA;Note=Pfam match to entry PF01715 IPPT%2C IPP transferase%2C score 478.50%2C E-value 5.4e-140;gbkey=misc_feature;gene=miaA
AL450380.1	EMBL	ribosome_entry_site	1164300	1164305	.	+	.	ID=id-AL450380.1:1164300..1164305;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1164317	1165207	.	+	.	ID=gene-dapF;Name=dapF;gbkey=Gene;gene=dapF;gene_biotype=protein_coding;gene_synonym=ML0996
AL450380.1	EMBL	CDS	1164317	1165207	.	+	0	ID=cds-CAC31377.1;Parent=gene-dapF;Dbxref=GOA:P46814,InterPro:IPR001653,InterPro:IPR018510,NCBI_GP:CAC31377.1;Name=CAC31377.1;Note=Identical to the previously sequenced Mycobacterium leprae diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase) involved in the biosynthesis of lysine from aspartate semialdehyde SW:DAPF_MYCLE (P46814) (296 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 296 aa overlap. Also highly similar to DAP epimerases from Mycobacterium tuberculosis SW:DAPF_MYCTU (O33231) (289 aa)%3B Fasta score E(): 0%2C 76.0%25 identity in 292 aa overlap and Escherichia coli SW:DAPF_ECOLI (P08885) (274 aa)%3B Fasta score E(): 4.2e-13%2C 32.3%25 identity in 294 aa overlap. Contains Pfam match to entry PF01678 DAP_epimerase%2C Diaminopimelate epimerase. Contains PS01326 Diaminopimelate epimerase signature.;gbkey=CDS;gene=dapF;product=diaminopimelate epimerase;protein_id=CAC31377.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1164317	1165174	.	+	.	ID=id-dapF;Note=Pfam match to entry PF01678 DAP_epimerase%2C Diaminopimelate epimerase%2C score 498.80%2C E-value 4.3e-146;gbkey=misc_feature;gene=dapF
AL450380.1	EMBL	sequence_feature	1164548	1164592	.	+	.	ID=id-dapF-2;Note=PS01326 Diaminopimelate epimerase signature;gbkey=misc_feature;gene=dapF
AL450380.1	EMBL	gene	1165270	1166736	.	+	.	ID=gene-ML0997;Name=ML0997;gbkey=Gene;gene=ML0997;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1165270	1166736	.	+	0	ID=cds-CAC31378.1;Parent=gene-ML0997;Dbxref=GOA:Q9CCC0,InterPro:IPR006073,InterPro:IPR016496,InterPro:IPR025121,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CCC0,NCBI_GP:CAC31378.1;Name=CAC31378.1;Note=Identical to the previously sequenced Mycobacterium leprae HflX protein TR:Q49843 (EMBL:U00019) (518 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 488 aa overlap. Also highly similar to Mycobacterium tuberculosis hypothetical protein TR:O33230 (EMBLZ98209:) (495 aa)%3B Fasta score E(): 0%2C 84.5%25 identity in 485 aa overlap and Escherichia coli GTP-binding protein HflX%2C located within the hflA (high frequency of lysogenization) locus governing lysis and lysogeny of bacteriophage lambda%2C SW:HFLX_ECOLI (P25519) (426 aa)%3B Fasta score E(): 0%2C 38.3%25 identity in 428 aa overlap. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML0997;product=possible ATP/GTP-binding protein;protein_id=CAC31378.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1166068	1166091	.	+	.	ID=id-ML0997;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML0997
AL450380.1	EMBL	pseudogene	1166930	1168051	.	+	.	ID=gene-ML0998;Name=ML0998;gbkey=Gene;gene=ML0998;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1166930	1168051	.	+	0	ID=cds-ML0998;Parent=gene-ML0998;Note=Possible pseudogene of M. tuberculosis orthologue fadE13 (Best blastx score 104);gbkey=CDS;gene=ML0998;product=possible acyl-CoA dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1168380	1168733	.	-	.	ID=gene-ML0999;Name=ML0999;gbkey=Gene;gene=ML0999;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1168380	1168733	.	-	0	ID=cds-ML0999;Parent=gene-ML0999;Note=Possible pseudogene of M. tuberculosis orthologue Rv1369c (Best blastx score 128). Similar to several other Mycobacterium tuberculosis transposases e.g. SW:YK87_MYCTU.;gbkey=CDS;gene=ML0999;product=possible transposase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1170353	1170596	.	+	.	ID=gene-ML1000;Name=ML1000;gbkey=Gene;gene=ML1000;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1170353	1170596	.	+	0	ID=cds-ML1000;Parent=gene-ML1000;Note=Possible pseudogene of M. tuberculosis orthologue Rv2346c (Best blastx score 132);gbkey=CDS;gene=ML1000;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1172599	1172874	.	-	.	ID=gene-ML1001;Name=ML1001;gbkey=Gene;gene=ML1001;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1172599	1172874	.	-	0	ID=cds-CAC31382.1;Parent=gene-ML1001;Dbxref=UniProtKB/TrEMBL:Q9CCB9,NCBI_GP:CAC31382.1;Name=CAC31382.1;Note=Doubful CDS. Similar in the N-terminus to Mycobacterium tuberculosis TR:O33227 (EMBL:Z98209) (82 aa)%3B Fasta score E(): 4.4e-05%2C 37.5%25 identity in 88 aa overlap.;gbkey=CDS;gene=ML1001;product=hypothetical protein;protein_id=CAC31382.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1172876	1172880	.	-	.	ID=id-AL450380.1:1172876..1172880;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	ribosome_entry_site	1172911	1172915	.	+	.	ID=id-AL450380.1:1172911..1172915;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1172919	1174982	.	+	.	ID=gene-ML1002;Name=ML1002;gbkey=Gene;gene=ML1002;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1172919	1174982	.	+	0	ID=cds-CAC31383.1;Parent=gene-ML1002;Dbxref=InterPro:IPR013207,UniProtKB/TrEMBL:Q7AQB6,NCBI_GP:CAC31383.1;Name=CAC31383.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49837 (EMBL:U00019) (687 aa)%3B Fasta score E(): 0%2C 99.9%25 identity in 687 aa overlap. Also highly similar to Mycobacterium tuberculosis hypothetical protein Rv2721c TR:O07219. Contains a possible membrane spanning hydrophobic domain.;gbkey=CDS;gene=ML1002;product=possible conserved membrane protein;protein_id=CAC31383.1;transl_table=11
AL450380.1	EMBL	gene	1175021	1175728	.	-	.	ID=gene-lexA;Name=lexA;gbkey=Gene;gene=lexA;gene_biotype=protein_coding;gene_synonym=ML1003
AL450380.1	EMBL	CDS	1175021	1175728	.	-	0	ID=cds-CAC31384.1;Parent=gene-lexA;Dbxref=GOA:Q49848,InterPro:IPR006197,InterPro:IPR006199,InterPro:IPR006200,InterPro:IPR011991,InterPro:IPR015927,InterPro:IPR019759,InterPro:IPR028360,NCBI_GP:CAC31384.1;Name=CAC31384.1;Note=Identical to the previously sequenced Mycobacterium leprae LexA protein TR:Q49848 (EMBL:U00019) (235 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 235 aa overlap. Also highly similar to many other LexA proteins known to repress genes in response to DNA damage%2C as part of the SOS response e.g. from Mycobacterium tuberculosis TR:Q50765 (EMBL:X91407) (217 aa)%3B Fasta score E(): 0%2C 89.4%25 identity in 218 aa overlap and Escherichia coli SW:LEXA_ECOLI (P03033) (202 aa)%3B Fasta score E(): 2.3e-10%2C 33.5%25 identity in 215 aa overlap. Note codon 19 represents an alternative possible translational start site. Contains Pfam match to entry PF00717 Peptidase_S24%2C Peptidase family S24. Contains Pfam match to entry PF01726 LexA_DNA_bind%2C LexA DNA binding domain.;gbkey=CDS;gene=lexA;product=LexA%2C SOS repressor protein;protein_id=CAC31384.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1175060	1175425	.	-	.	ID=id-lexA;Note=Pfam match to entry PF00717 Peptidase_S24%2C Peptidase family S24%2C score 104.50%2C E-value 2e-27;gbkey=misc_feature;gene=lexA
AL450380.1	EMBL	sequence_feature	1175477	1175671	.	-	.	ID=id-lexA-2;Note=Pfam match to entry PF01726 LexA_DNA_bind%2C LexA DNA binding domain%2C score 136.80%2C E-value 3.8e-37;gbkey=misc_feature;gene=lexA
AL450380.1	EMBL	ribosome_entry_site	1175996	1176000	.	+	.	ID=id-AL450380.1:1175996..1176000;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1176008	1176502	.	+	.	ID=gene-ML1004;Name=ML1004;gbkey=Gene;gene=ML1004;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1176008	1176502	.	+	0	ID=cds-CAC31385.1;Parent=gene-ML1004;Dbxref=InterPro:IPR018392,UniProtKB/TrEMBL:Q7AQB5,NCBI_GP:CAC31385.1;Name=CAC31385.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49846 (EMBL:U00019) (164 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 164 aa overlap. Also highly similar to Mycobacterium tuberculosis hypothetical protein Rv2719c TR:O07218 (EMBL:Z96072) (165 aa)%3B Fasta score E(): 1.8e-23%2C 55.2%25 identity in 163 aa overlap. Contains a possible membrane spanning hydrophobic domain.;gbkey=CDS;gene=ML1004;product=possible conserved membrane protein;protein_id=CAC31385.1;transl_table=11
AL450380.1	EMBL	gene	1176664	1177128	.	+	.	ID=gene-ML1005;Name=ML1005;gbkey=Gene;gene=ML1005;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1176664	1177128	.	+	0	ID=cds-CAC31386.1;Parent=gene-ML1005;Dbxref=GOA:Q49844,InterPro:IPR003796,InterPro:IPR005144,NCBI_GP:CAC31386.1;Name=CAC31386.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49844 (EMBL:U00019) (154 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 154 aa overlap. Also highly similar to a number of other proteins of unknown function e.g. Mycobacterium tuberculosis Rv2718c TR:O07217 (EMBL:Z96072) (154 aa)%3B Fasta score E(): 0%2C 92.7%25 identity in 151 aa overlap and Escherichia coli SW:YBAD_ECOLI (P25538) (149 aa)%3B Fasta score E(): 9.7e-21%2C 45.6%25 identity in 147 aa overlap.;gbkey=CDS;gene=ML1005;product=conserved hypothetical protein;protein_id=CAC31386.1;transl_table=11
AL450380.1	EMBL	gene	1177170	1177655	.	+	.	ID=gene-ML1006;Name=ML1006;gbkey=Gene;gene=ML1006;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1177170	1177655	.	+	0	ID=cds-CAC31387.1;Parent=gene-ML1006;Dbxref=GOA:Q9CCB8,InterPro:IPR011038,InterPro:IPR014878,InterPro:IPR022939,NCBI_GP:CAC31387.1;Name=CAC31387.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49838 (EMBL:U00019) (138 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 138 aa overlap. Note this CDS is 23 aa longer than the previously published sequence due to the assignment of the translational start site. Also highly similar to a number of other proteins of unknown function e.g. Mycobacterium tuberculosis Rv2717c TR:O07216 (EMBL:Z96072) (164 aa)%3B Fasta score E(): 0%2C 73.8%25 identity in 164 aa overlap.;gbkey=CDS;gene=ML1006;product=conserved hypothetical protein;protein_id=CAC31387.1;transl_table=11
AL450380.1	EMBL	pseudogene	1177749	1178392	.	-	.	ID=gene-ML1007;Name=ML1007;gbkey=Gene;gene=ML1007;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1177749	1178392	.	-	0	ID=cds-ML1007;Parent=gene-ML1007;Note=Possible pseudogene of M. tuberculosis orthologue Rv2716 (Best blastx score 190);gbkey=CDS;gene=ML1007;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1178457	1179491	.	-	.	ID=gene-ML1008;Name=ML1008;gbkey=Gene;gene=ML1008;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1178457	1179491	.	-	0	ID=cds-ML1008;Parent=gene-ML1008;Note=Possible pseudogene of M. tuberculosis orthologue Rv2715 (Best blastx score 361);gbkey=CDS;gene=ML1008;product=possible hydrolase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1179519	1180499	.	-	.	ID=gene-ML1009;Name=ML1009;gbkey=Gene;gene=ML1009;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1179519	1180499	.	-	0	ID=cds-CAC31390.1;Parent=gene-ML1009;Dbxref=GOA:Q7AQB4,InterPro:IPR008492,InterPro:IPR013028,InterPro:IPR019151,UniProtKB/TrEMBL:Q7AQB4,NCBI_GP:CAC31390.1;Name=CAC31390.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49847 (EMBL:U00019) (326 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 326 aa overlap. Also highly similar to a number of other proteins of unknown function e.g. Mycobacterium tuberculosis Rv2714 TR:O07213 (EMBL:Z96072) (324 aa)%3B Fasta score E(): 0%2C 89.7%25 identity in 320 aa overlap.;gbkey=CDS;gene=ML1009;product=conserved hypothetical protein;protein_id=CAC31390.1;transl_table=11
AL450380.1	EMBL	gene	1180776	1181018	.	-	.	ID=gene-ML1010;Name=ML1010;gbkey=Gene;gene=ML1010;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1180776	1181018	.	-	0	ID=cds-CAC31391.1;Parent=gene-ML1010;Dbxref=UniProtKB/TrEMBL:Q9CCB7,NCBI_GP:CAC31391.1;Name=CAC31391.1;Note=function unknown.;gbkey=CDS;gene=ML1010;product=hypothetical protein;protein_id=CAC31391.1;transl_table=11
AL450380.1	EMBL	gene	1181058	1181480	.	-	.	ID=gene-ML1011;Name=ML1011;gbkey=Gene;gene=ML1011;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1181058	1181480	.	-	0	ID=cds-CAC31392.1;Parent=gene-ML1011;Dbxref=UniProtKB/TrEMBL:Q9CCB6,NCBI_GP:CAC31392.1;Name=CAC31392.1;Note=function unknown.;gbkey=CDS;gene=ML1011;product=hypothetical protein;protein_id=CAC31392.1;transl_table=11
AL450380.1	EMBL	pseudogene	1181548	1182968	.	-	.	ID=gene-ML1012;Name=ML1012;gbkey=Gene;gene=ML1012;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1181548	1182968	.	-	0	ID=cds-ML1012;Parent=gene-ML1012;Note=Possible pseudogene of M. tuberculosis orthologue Rv2713 (Best blastx score 507);gbkey=CDS;gene=ML1012;product=possible dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1183481	1184173	.	-	.	ID=gene-ML1013;Name=ML1013;gbkey=Gene;gene=ML1013;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1183481	1184173	.	-	0	ID=cds-CAC31394.1;Parent=gene-ML1013;Dbxref=GOA:Q9CCB5,InterPro:IPR001367,InterPro:IPR007167,InterPro:IPR008988,InterPro:IPR011991,InterPro:IPR022687,InterPro:IPR022689,NCBI_GP:CAC31394.1;Name=CAC31394.1;Note=Highly similar to multiple iron-binding regulatory proteins such as Mycobacterium tuberculosis SW:IDER_MYCTU (Q50495) (230 aa)%3B Fasta score E(): 0%2C 90.0%25 identity in 230 aa overlap and Corynebacterium diphtheriae SW:DTXR_CORDI (P33120) (226 aa)%3B Fasta score E(): 0%2C 56.1%25 identity in 230 aa overlap. Contains Pfam match to entry PF01325 Fe_dep_repress%2C Iron dependent repressor.;gbkey=CDS;gene=ML1013;product=iron dependent repressor;protein_id=CAC31394.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1183775	1184161	.	-	.	ID=id-ML1013;Note=Pfam match to entry PF01325 Fe_dep_repress%2C Iron dependent repressor%2C score 248.00%2C E-value 1.3e-70;gbkey=misc_feature;gene=ML1013
AL450380.1	EMBL	ribosome_entry_site	1184178	1184185	.	-	.	ID=id-AL450380.1:1184178..1184185;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1184330	1185289	.	-	.	ID=gene-ML1014;Name=ML1014;gbkey=Gene;gene=ML1014;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1184330	1185289	.	-	0	ID=cds-CAC31395.1;Parent=gene-ML1014;Dbxref=GOA:Q59531,InterPro:IPR000943,InterPro:IPR007624,InterPro:IPR007627,InterPro:IPR007630,InterPro:IPR009042,InterPro:IPR011991,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,UniProtKB/TrEMBL:Q59531,NCBI_GP:CAC31395.1;Name=CAC31395.1;Note=Identical to the previously sequenced Mycobacterium leprae RNA polymerase sigma factor TR:Q59531 (EMBL:U15181) (319 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 319 aa overlap. Also highly similar to many Sigma-70 family proteins e.g. Mycobacterium tuberculosis TR:Q59563 (EMBL:U10059) (323 aa)%3B Fasta score E(): 0%2C 96.2%25 identity in 316 aa overlap and Streptomyces coelicolor SW:HRDB_STRCO (P18183) (442 aa)%3B Fasta score E(): 0%2C 60.7%25 identity in 303 aa overlap. Contains a probable helix-turn-helix motif at aa 278-299 (Score 1887%2C SD +5.61) Contains Pfam match to entry PF00140 sigma70%2C Sigma-70 factor. Contains PS00716 Sigma-70 factors family signature 2. Contains PS00715 Sigma-70 factors family signature 1.%3B~Highly similar to the C-terminus of ML1022;gbkey=CDS;gene=ML1014;product=RNA polymerase sigma factor;protein_id=CAC31395.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1184369	1185052	.	-	.	ID=id-ML1014;Note=Pfam match to entry PF00140 sigma70%2C Sigma-70 factor%2C score 388.60%2C E-value 6e-113;gbkey=misc_feature;gene=ML1014
AL450380.1	EMBL	sequence_feature	1184375	1184455	.	-	.	ID=id-ML1014-2;Note=PS00716 Sigma-70 factors family signature 2;gbkey=misc_feature;gene=ML1014
AL450380.1	EMBL	sequence_feature	1184921	1184962	.	-	.	ID=id-ML1014-3;Note=PS00715 Sigma-70 factors family signature 1;gbkey=misc_feature;gene=ML1014
AL450380.1	EMBL	ribosome_entry_site	1185295	1185299	.	-	.	ID=id-AL450380.1:1185295..1185299;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1185456	1185875	.	-	.	ID=gene-ML1015;Name=ML1015;gbkey=Gene;gene=ML1015;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1185456	1185875	.	-	0	ID=cds-CAC31396.1;Parent=gene-ML1015;Dbxref=InterPro:IPR021449,UniProtKB/TrEMBL:Q9CCB4,NCBI_GP:CAC31396.1;Name=CAC31396.1;Note=Almost identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49983 (EMBL:U15181) (162 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 139 aa overlap. Also highly similar to Mycobacterium tuberculosis Rv2709 TR:O07210 (EMBL:Z96072) (148 aa)%3B Fasta score E(): 0%2C 70.7%25 identity in 123 aa overlap. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1015;product=possible conserved membrane protein;protein_id=CAC31396.1;transl_table=11
AL450380.1	EMBL	gene	1185903	1186226	.	+	.	ID=gene-ML1016;Name=ML1016;gbkey=Gene;gene=ML1016;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1185903	1186226	.	+	0	ID=cds-CAC31397.1;Parent=gene-ML1016;Dbxref=InterPro:IPR021400,UniProtKB/TrEMBL:Q7AQB3,NCBI_GP:CAC31397.1;Name=CAC31397.1;Note=Identical to the previously sequenced Mycobacterium leprae TR:Q49984 (EMBL:U15181) (107 aa)%3B Fasta score E(): 0%2C 99.1%25 identity in 107 aa overlap. Also highly similar to several proteins of undefined function e.g. Mycobacterium tuberculosis Rv2707 possible membrane protein TR:O07209 (EMBL:Z96072) (82 aa)%3B Fasta score E(): 9.2e-29%2C 87.8%25 identity in 82 aa overlap.;gbkey=CDS;gene=ML1016;product=conserved hypothetical protein;protein_id=CAC31397.1;transl_table=11
AL450380.1	EMBL	gene	1186213	1187205	.	-	.	ID=gene-ML1017;Name=ML1017;gbkey=Gene;gene=ML1017;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1186213	1187205	.	-	0	ID=cds-CAC31398.1;Parent=gene-ML1017;Dbxref=InterPro:IPR017039,UniProtKB/TrEMBL:Q7AQB2,NCBI_GP:CAC31398.1;Name=CAC31398.1;Note=Identical to the previously sequenced Mycobacterium leprae TR:Q49985 (EMBL:U15181) (330 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 330 aa overlap. Also highly similar to several proteins of undefined function e.g. Mycobacterium tuberculosis Rv2707 possible membrane protein TR:O07208 (EMBL:Z96072) (324 aa)%3B Fasta score E(): 0%2C 75.4%25 identity in 325 aa overlap.;gbkey=CDS;gene=ML1017;product=possible conserved integral membrane protein;protein_id=CAC31398.1;transl_table=11
AL450380.1	EMBL	gene	1187210	1187425	.	-	.	ID=gene-ML1018;Name=ML1018;gbkey=Gene;gene=ML1018;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1187210	1187425	.	-	0	ID=cds-CAC31399.1;Parent=gene-ML1018;Dbxref=UniProtKB/TrEMBL:Q9CCB3,NCBI_GP:CAC31399.1;Name=CAC31399.1;Note=unknown function.;gbkey=CDS;gene=ML1018;product=hypothetical protein;protein_id=CAC31399.1;transl_table=11
AL450380.1	EMBL	pseudogene	1187881	1188089	.	+	.	ID=gene-ML1019;Name=ML1019;gbkey=Gene;gene=ML1019;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1187881	1188089	.	+	0	ID=cds-ML1019;Parent=gene-ML1019;Note=Possible pseudogene of M. tuberculosis orthologue Rv2706c (Best blastx score 69);gbkey=CDS;gene=ML1019;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1188114	1188447	.	+	.	ID=gene-ML1020;Name=ML1020;gbkey=Gene;gene=ML1020;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1188114	1188447	.	+	0	ID=cds-ML1020;Parent=gene-ML1020;Note=Possible pseudogene of M. tuberculosis orthologue Rv2705c (Best blastx score 206);gbkey=CDS;gene=ML1020;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1188440	1188858	.	-	.	ID=gene-ML1021;Name=ML1021;gbkey=Gene;gene=ML1021;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1188440	1188858	.	-	0	ID=cds-ML1021;Parent=gene-ML1021;Note=Possible pseudogene of M. tuberculosis orthologue Rv2704 (Best blastx score 153);gbkey=CDS;gene=ML1021;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1189185	1190909	.	-	.	ID=gene-rpoT;Name=rpoT;gbkey=Gene;gene=rpoT;gene_biotype=protein_coding;gene_synonym=ML1022
AL450380.1	EMBL	CDS	1189185	1190909	.	-	0	ID=cds-CAC31403.1;Parent=gene-rpoT;Dbxref=GOA:Q7AQB1,InterPro:IPR000943,InterPro:IPR007624,InterPro:IPR007627,InterPro:IPR007630,InterPro:IPR009042,InterPro:IPR011991,InterPro:IPR012760,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,InterPro:IPR028630,UniProtKB/TrEMBL:Q7AQB1,NCBI_GP:CAC31403.1;Name=CAC31403.1;Note=Identical to the previously sequenced Mycobacterium leprae RNA polymerase sigma factor%2C rpoT TR:Q59532 (EMBL:U15181) (574 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 574 aa overlap. Also highly similar to many other proposed sigma factors e.g. Mycobacterium tuberculosis SigA (RpoD)%2C RNA polymerase sigma factor Rv2703 SW:RPSA_MYCTU (Q60162) (528 aa)%3B Fasta score E(): 0%2C 80.5%25 identity in 533 aa overlap. Contains a probable helix-turn-helix motif at aa 533-554 (Score 1603%2C SD +4.65) Contains Pfam match to entry PF00140 sigma70%2C Sigma-70 factor. Contains PS00716 Sigma-70 factors family signature 2. Contains PS00715 Sigma-70 factors family signature 1.%3B~The C-terminus is highly similar to ML1014;gbkey=CDS;gene=rpoT;product=RNA polymerase sigma factor;protein_id=CAC31403.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1189224	1189907	.	-	.	ID=id-rpoT;Note=Pfam match to entry PF00140 sigma70%2C Sigma-70 factor%2C score 464.90%2C E-value 6.8e-136;gbkey=misc_feature;gene=rpoT
AL450380.1	EMBL	sequence_feature	1189230	1189310	.	-	.	ID=id-rpoT-2;Note=PS00716 Sigma-70 factors family signature 2;gbkey=misc_feature;gene=rpoT
AL450380.1	EMBL	sequence_feature	1189776	1189817	.	-	.	ID=id-rpoT-3;Note=PS00715 Sigma-70 factors family signature 1;gbkey=misc_feature;gene=rpoT
AL450380.1	EMBL	gene	1190920	1191894	.	-	.	ID=gene-ppgK;Name=ppgK;gbkey=Gene;gene=ppgK;gene_biotype=protein_coding;gene_synonym=ML1023
AL450380.1	EMBL	CDS	1190920	1191894	.	-	0	ID=cds-CAC31404.1;Parent=gene-ppgK;Dbxref=GOA:Q49988,InterPro:IPR000600,NCBI_GP:CAC31404.1;Name=CAC31404.1;Note=Identical to the previously sequenced Mycobacterium leprae polyphosphate glucokinase (EC 2.7.1.63) SW:PPGK_MYCLE (Q49988) (324 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 324 aa overlap catalysing the phosphorylation of glucose thereby generating D-glucose 6-phosphate. Also highly similar to Mycobacterium tuberculosis SW:PPGK_MYCTU (Q59568) (265 aa)%3B Fasta score E(): 0%2C 82.8%25 identity in 262 aa overlap. Note the predicted translational start site for this CDS maybe incorrect due to the overlap with CDS ML1024.;gbkey=CDS;gene=ppgK;product=polyphosphate glucokinase;protein_id=CAC31404.1;transl_table=11
AL450380.1	EMBL	gene	1191843	1192718	.	+	.	ID=gene-suhB;Name=suhB;gbkey=Gene;gene=suhB;gene_biotype=protein_coding;gene_synonym=ML1024
AL450380.1	EMBL	CDS	1191843	1192718	.	+	0	ID=cds-CAC31405.1;Parent=gene-suhB;Dbxref=GOA:P46813,InterPro:IPR000760,InterPro:IPR020550,InterPro:IPR020583,NCBI_GP:CAC31405.1;Name=CAC31405.1;Note=Identical to the previously sequenced Mycobacterium leprae extragenic suppressor protein SuhB homologue SW:SUHB_MYCLE (P46813) (291 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 291 aa overlap. Also highly similar to many other members of the inositol monophosphatase family including: Mycobacterium tuberculosis%2C Rv2701c or ShuB%2C SW:SUHB_MYCTU (O07203) (290 aa)%3B Fasta score E(): 0%2C 77.6%25 identity in 294 aa overlap and Escherichia coli ShuB%2C SW:SUHB_ECOLI (P22783) (267 aa)%3B Fasta score E(): 1.6e-18%2C 34.7%25 identity in 239 aa overlap%2C shown to suppress the effect of a temperature-sensitive mutation in E. coli. Note the predicted translational start site for this CDS maybe incorrect due to the overlap with CDS ML1023. Contains Pfam match to entry PF00459 inositol_P%2C Inositol monophosphatase family. Contains PS00629 Inositol monophosphatase family signature 1. Contains PS00630 Inositol monophosphatase family signature 2.;gbkey=CDS;gene=suhB;product=putative inositol monophosphatase.;protein_id=CAC31405.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1192080	1192598	.	+	.	ID=id-suhB;Note=Pfam match to entry PF00459 inositol_P%2C Inositol monophosphatase family%2C score 266.10%2C E-value 4.7e-76;gbkey=misc_feature;gene=suhB
AL450380.1	EMBL	sequence_feature	1192143	1192184	.	+	.	ID=id-suhB-2;Note=PS00629 Inositol monophosphatase family signature 1;gbkey=misc_feature;gene=suhB
AL450380.1	EMBL	sequence_feature	1192542	1192586	.	+	.	ID=id-suhB-3;Note=PS00630 Inositol monophosphatase family signature 2;gbkey=misc_feature;gene=suhB
AL450380.1	EMBL	gene	1192722	1193372	.	-	.	ID=gene-ML1025;Name=ML1025;gbkey=Gene;gene=ML1025;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1192722	1193372	.	-	0	ID=cds-CAC31406.1;Parent=gene-ML1025;Dbxref=InterPro:IPR027381,UniProtKB/TrEMBL:Q7AQB0,NCBI_GP:CAC31406.1;Name=CAC31406.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49989 (EMBL:U15181) (216 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 216 aa overlap. Also highly similar to Mycobacterium tuberculosis hypothetical protein Rv2700 TR:O07202 (EMBL:Z96072) (216 aa)%3B Fasta score E(): 0%2C 82.4%25 identity in 216 aa overlap. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=ML1025;product=possible secreted protein;protein_id=CAC31406.1;transl_table=11
AL450380.1	EMBL	gene	1193568	1193870	.	+	.	ID=gene-ML1026;Name=ML1026;gbkey=Gene;gene=ML1026;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1193568	1193870	.	+	0	ID=cds-CAC31407.1;Parent=gene-ML1026;Dbxref=InterPro:IPR025242,UniProtKB/TrEMBL:Q7AQA9,NCBI_GP:CAC31407.1;Name=CAC31407.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q4998. Also highly similar to hypothetical proteins from Mycobacterium tuberculosis Rv2699c TR:O07201 (EMBL:Z96072) (100 aa)%3B Fasta score E(): 0%2C 96.0%25 identity in 100 aa overlap and Streptomyces coelicolor TR:O54130 (EMBL:AL021530) (98 aa)%3B Fasta score E(): 3.4e-26%2C 70.4%25 identity in 98 aa overlap.;gbkey=CDS;gene=ML1026;product=conserved hypothetical protein;protein_id=CAC31407.1;transl_table=11
AL450380.1	EMBL	gene	1193875	1194348	.	-	.	ID=gene-ML1027;Name=ML1027;gbkey=Gene;gene=ML1027;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1193875	1194348	.	-	0	ID=cds-CAC31408.1;Parent=gene-ML1027;Dbxref=InterPro:IPR021443,UniProtKB/TrEMBL:Q7AQA8,NCBI_GP:CAC31408.1;Name=CAC31408.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49991 (EMBL:U15181) (157 aa)%3B Fasta score E(): 0%2C 99.4%25 identity in 157 aa overlap. Also highly similar to proteins of unknown function from Mycobacterium tuberculosis Rv2698 TR:O07200 (EMBL:Z96072) (161 aa)%3B Fasta score E(): 0%2C 78.9%25 identity in 161 aa overlap and Streptomyces coelicolor TR:O54132 (EMBL:AL021530) (154 aa)%3B Fasta score E(): 1.1e-08%2C 33.6%25 identity in 149 aa overlap. Contains possible membrane spanning hydrophobic domains. Contains a probable helix-turn-helix motif at aa 87-108 (Score 1009%2C SD +2.62);gbkey=CDS;gene=ML1027;product=possible membrane protein;protein_id=CAC31408.1;transl_table=11
AL450380.1	EMBL	gene	1194374	1194838	.	+	.	ID=gene-dut;Name=dut;gbkey=Gene;gene=dut;gene_biotype=protein_coding;gene_synonym=ML1028
AL450380.1	EMBL	CDS	1194374	1194838	.	+	0	ID=cds-CAC31409.1;Parent=gene-dut;Dbxref=GOA:Q49992,InterPro:IPR008180,InterPro:IPR008181,InterPro:IPR029054,NCBI_GP:CAC31409.1;Name=CAC31409.1;Note=Identical to the previously sequenced Mycobacterium leprae deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) SW:DUT_MYCLE (Q49992) (155 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 154 aa overlap. Also highly similar to many other dUTPases%2C involved in nucleotide metabolism%2C including Mycobacterium tuberculosis SW:DUT_MYCTU (O07199) (154 aa)%3B Fasta score E(): 0%2C 90.3%25 identity in 154 aa overlap and Escherichia coli SW:DUT_ECOLI (P06968) (461 aa)%3B BlastP Expect 8.8. Contains Pfam match to entry PF00692 dUTPase%2C dUTPase.;gbkey=CDS;gene=dut;product=probable deoxyuridine triphosphatase;protein_id=CAC31409.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1194407	1194820	.	+	.	ID=id-dut;Note=Pfam match to entry PF00692 dUTPase%2C dUTPase%2C score 103.50%2C E-value 4.2e-27;gbkey=misc_feature;gene=dut
AL450380.1	EMBL	gene	1194835	1195656	.	+	.	ID=gene-ML1029;Name=ML1029;gbkey=Gene;gene=ML1029;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1194835	1195656	.	+	0	ID=cds-CAC31410.1;Parent=gene-ML1029;Dbxref=InterPro:IPR022183,UniProtKB/TrEMBL:Q7AQA7,NCBI_GP:CAC31410.1;Name=CAC31410.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49993 (EMBL:U15181) (273 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 273 aa overlap. Also highly similar to Mycobacterium tuberculosis hypothetical protein Rv2696c TR:O07198 (EMBL:Z96072) (259 aa)%3B Fasta score E(): 0%2C 70.6%25 identity in 262 aa overlap.;gbkey=CDS;gene=ML1029;product=conserved hypothetical protein;protein_id=CAC31410.1;transl_table=11
AL450380.1	EMBL	gene	1195701	1196399	.	-	.	ID=gene-ML1030;Name=ML1030;gbkey=Gene;gene=ML1030;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1195701	1196399	.	-	0	ID=cds-CAC31411.1;Parent=gene-ML1030;Dbxref=InterPro:IPR029058,UniProtKB/TrEMBL:Q7AQA6,NCBI_GP:CAC31411.1;Name=CAC31411.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49994 (EMBL:U15181) (232 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 232 aa overlap. Also highly similar to Mycobacterium tuberculosis hypothetical protein Rv2695 TR:O07197 (EMBL:Z96072) (235 aa)%3B Fasta score E(): 0%2C 76.5%25 identity in 230 aa overlap.;gbkey=CDS;gene=ML1030;product=conserved hypothetical protein;protein_id=CAC31411.1;transl_table=11
AL450380.1	EMBL	pseudogene	1196608	1196934	.	+	.	ID=gene-ML1031;Name=ML1031;gbkey=Gene;gene=ML1031;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1196608	1196934	.	+	0	ID=cds-ML1031;Parent=gene-ML1031;Note=Possible pseudogene of M. tuberculosis orthologue Rv2694c (Best blastx score 124);gbkey=CDS;gene=ML1031;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1197131	1197553	.	+	.	ID=gene-ML1032;Name=ML1032;gbkey=Gene;gene=ML1032;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1197131	1197553	.	+	0	ID=cds-ML1032;Parent=gene-ML1032;Note=Possible pseudogene of M. tuberculosis orthologue Rv2693c (Best blastx score 118);gbkey=CDS;gene=ML1032;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1197735	1198009	.	-	.	ID=gene-ML1033;Name=ML1033;gbkey=Gene;gene=ML1033;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1197735	1198009	.	-	0	ID=cds-ML1033;Parent=gene-ML1033;Note=Possible pseudogene of M. tuberculosis orthologue trkB (Best blastx score 154);gbkey=CDS;gene=ML1033;product=putative potassium uptake protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1198007	1198482	.	+	.	ID=gene-ML1034;Name=ML1034;gbkey=Gene;gene=ML1034;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1198007	1198482	.	+	0	ID=cds-ML1034;Parent=gene-ML1034;Note=Possible pseudogene of M. tuberculosis orthologue Rv2687c (Best blastx score 207);gbkey=CDS;gene=ML1034;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1198510	1199220	.	+	.	ID=gene-ML1035;Name=ML1035;gbkey=Gene;gene=ML1035;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1198510	1199220	.	+	0	ID=cds-ML1035;Parent=gene-ML1035;Note=Possible pseudogene of M. tuberculosis orthologue Rv2686c (Best blastx score 229);gbkey=CDS;gene=ML1035;product=possible membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1199237	1200526	.	-	.	ID=gene-ML1036;Name=ML1036;gbkey=Gene;gene=ML1036;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1199237	1200526	.	-	0	ID=cds-CAC31417.1;Parent=gene-ML1036;Dbxref=GOA:P46838,InterPro:IPR000802,InterPro:IPR004680,NCBI_GP:CAC31417.1;Name=CAC31417.1;Note=Identical to the previously sequenced Mycobacterium leprae probable membrane transport protein SW:AG45_MYCLE (P46838) (429 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 429 aa overlap. Also highly similar to Mycobacterium tuberculosis probable integral-membrane transport protein SW:YQ84_MYCTU (Z96072) (429 aa)%3B Fasta score E(): 0%2C 74.3%25 identity in 428 aa overlap and Escherichia coli arsenical pump membrane protein SW:ARSB_ECOLI (P37310) (429 aa)%3B Fasta score E(): 1.2e-17%2C 23.2%25 identity in 435 aa overlap. Contains multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1036;product=probable membrane transport protein;protein_id=CAC31417.1;transl_table=11
AL450380.1	EMBL	gene	1200579	1201133	.	-	.	ID=gene-ML1037;Name=ML1037;gbkey=Gene;gene=ML1037;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1200579	1201133	.	-	0	ID=cds-CAC31418.1;Parent=gene-ML1037;Dbxref=GOA:Q7AQA5,InterPro:IPR000644,UniProtKB/TrEMBL:Q7AQA5,NCBI_GP:CAC31418.1;Name=CAC31418.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49999 (EMBL:U15181) (184 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 184 aa overlap. Also highly similar to Mycobacterium tuberculosis hypothetical protein Rv2683 TR:O07185 (EMBL:Z96072) (165 aa)%3B Fasta score E(): 0%2C 73.8%25 identity in 164 aa overlap. Contains 2 Pfam matches to entry PF00571 CBS%2C CBS domain.;gbkey=CDS;gene=ML1037;product=conserved hypothetical protein;protein_id=CAC31418.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1200588	1200746	.	-	.	ID=id-ML1037;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 31.90%2C E-value 1.5e-05;gbkey=misc_feature;gene=ML1037
AL450380.1	EMBL	sequence_feature	1200852	1201013	.	-	.	ID=id-ML1037-2;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 27.80%2C E-value 0.00025;gbkey=misc_feature;gene=ML1037
AL450380.1	EMBL	gene	1201215	1203146	.	+	.	ID=gene-dxs;Name=dxs;gbkey=Gene;gene=dxs;gene_biotype=protein_coding;gene_synonym=ML1038
AL450380.1	EMBL	CDS	1201215	1203146	.	+	0	ID=cds-CAC31419.1;Parent=gene-dxs;Dbxref=GOA:Q50000,InterPro:IPR005474,InterPro:IPR005475,InterPro:IPR005476,InterPro:IPR005477,InterPro:IPR009014,InterPro:IPR020826,InterPro:IPR029061,NCBI_GP:CAC31419.1;Name=CAC31419.1;Note=Identical to the previously sequenced Mycobacterium leprae probable 1-deoxyxylulose-5-phosphate synthase (DXP synthase) SW:DXS_MYCL (Q50000) (643 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 643 aa overlapE. Also highly similar to many members of the transketolase family including DXP synthases from Mycobacterium tuberculosis Rv2682c SW:DXS_MYCTU (O07184) (638 aa)%3B Fasta score E(): 0%2C 86.4%25 identity in 632 aa overlap and Escherichia coli SW:DXS_ECOLI (P77488) (619 aa)%3B Fasta score E(): 0%2C 39.2%25 identity in 625 aa overlap. Contains PS00801 Transketolase signature 1. Contains PS00802 Transketolase signature 2.;gbkey=CDS;gene=dxs;product=1-deoxy-D-xylulose 5-phosphate synthase (DXP synthase);protein_id=CAC31419.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1201293	1201352	.	+	.	ID=id-dxs;Note=PS00801 Transketolase signature 1;gbkey=misc_feature;gene=dxs
AL450380.1	EMBL	sequence_feature	1202472	1202522	.	+	.	ID=id-dxs-2;Note=PS00802 Transketolase signature 2;gbkey=misc_feature;gene=dxs
AL450380.1	EMBL	pseudogene	1203549	1205226	.	+	.	ID=gene-ML1039;Name=ML1039;gbkey=Gene;gene=ML1039;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1203549	1205226	.	+	0	ID=cds-ML1039;Parent=gene-ML1039;Note=Possible pseudogene of M. tuberculosis orthologue Rv3727 (Best blastx score 386);gbkey=CDS;gene=ML1039;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	stem_loop	1204301	1204350	.	+	.	ID=id-ML1039;Note=possible stem loop structure with 100%25 identity over 48 bases and a loop of 2 bases;gbkey=stem_loop;gene=ML1039;pseudo=true
AL450380.1	EMBL	gene	1205247	1206536	.	-	.	ID=gene-ML1040;Name=ML1040;gbkey=Gene;gene=ML1040;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1205247	1206536	.	-	0	ID=cds-CAC31421.1;Parent=gene-ML1040;Dbxref=GOA:Q7AQA4,InterPro:IPR002121,InterPro:IPR002562,InterPro:IPR010997,InterPro:IPR012337,UniProtKB/TrEMBL:Q7AQA4,NCBI_GP:CAC31421.1;Name=CAC31421.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q50004 (EMBL:U15181) (429 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 429 aa overlap. Also highly similar to Mycobacterium tuberculosis hypothetical protein Rv2681 TR:O07183 (EMBL:Z96072) (438 aa)%3B Fasta score E(): 0%2C 77.4%25 identity in 416 aa overlap. The predicted product of this CDS is also weakly similar to several nucleases e.g. Escherichia coli SW:RND_ECOLI (P09155) (375 aa)%3B Fasta score E(): 2.4e-08%2C 26.7%25 identity in 371 aa overlap ribonuclease D (EC 3.1.26.3). Contains Pfam match to entry PF01612 3_5_exonuclease%2C 3'-5' exonuclease.;gbkey=CDS;gene=ML1040;product=conserved hypothetical protein;protein_id=CAC31421.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1205940	1206401	.	-	.	ID=id-ML1040;Note=Pfam match to entry PF01612 3_5_exonuclease%2C 3'-5' exonuclease%2C score 175.90%2C E-value 6.6e-49;gbkey=misc_feature;gene=ML1040
AL450380.1	EMBL	gene	1206538	1207128	.	-	.	ID=gene-ML1041;Name=ML1041;gbkey=Gene;gene=ML1041;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1206538	1207128	.	-	0	ID=cds-CAC31422.1;Parent=gene-ML1041;Dbxref=InterPro:IPR021555,UniProtKB/TrEMBL:Q7AQA3,NCBI_GP:CAC31422.1;Name=CAC31422.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q50005 (EMBL:U15181) (196 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 196 aa overlap. Also highly similar to hypothetical proteins from Mycobacterium tuberculosis Rv2680 TR:O86317 (EMBL:Z96072) (210 aa)%3B Fasta score E(): 0%2C 83.9%25 identity in 193 aa overlap and Streptomyces coelicolor TR:O69860 (EMBL:AL023702) (238 aa)%3B Fasta score E(): 2.9e-25%2C 43.5%25 identity in 186 aa overlap.;gbkey=CDS;gene=ML1041;product=conserved hypothetical protein;protein_id=CAC31422.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1207130	1207135	.	-	.	ID=id-AL450380.1:1207130..1207135;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	1207289	1208087	.	-	.	ID=gene-ML1042;Name=ML1042;gbkey=Gene;gene=ML1042;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1207289	1208087	.	-	0	ID=cds-ML1042;Parent=gene-ML1042;Note=Possible pseudogene of M. tuberculosis orthologue echA15 (Best blastx score 306);gbkey=CDS;gene=ML1042;product=enoyl-CoA hydratase/isomerase superfamily (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1208217	1209290	.	+	.	ID=gene-hemE;Name=hemE;gbkey=Gene;gene=hemE;gene_biotype=protein_coding;gene_synonym=ML1043
AL450380.1	EMBL	CDS	1208217	1209290	.	+	0	ID=cds-CAC31424.1;Parent=gene-hemE;Dbxref=GOA:P46809,InterPro:IPR000257,InterPro:IPR006361,NCBI_GP:CAC31424.1;Name=CAC31424.1;Note=Identical to the previously sequenced Mycobacterium leprae uroporphyrinogen decarboxylase (EC 4.1.1.37) SW:DCUP_MYCLE (P46809) (357 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 357 aa overlap. Also highly similar to many others including: Mycobacterium tuberculosis SW:DCUP_MYCTU (O53231) (357 aa)%3B Fasta score E(): 0%2C 83.8%25 identity in 357 aa overlap and Bacillus subtilis SW:DCUP_BACSU (P32395) (353 aa)%3B Fasta score E(): 0%2C 43.5%25 identity in 354 aa overlap. Contains Pfam match to entry PF01208 URO-D%2C Uroporphyrinogen decarboxylase (URO-D). Contains PS00907 Uroporphyrinogen decarboxylase signature 2. Contains PS00906 Uroporphyrinogen decarboxylase signature 1.;gbkey=CDS;gene=hemE;product=uroporphyrinogen decarboxylase;protein_id=CAC31424.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1208223	1209287	.	+	.	ID=id-hemE;Note=Pfam match to entry PF01208 URO-D%2C Uroporphyrinogen decarboxylase (URO-D)%2C score 824.40%2C E-value 4e-244;gbkey=misc_feature;gene=hemE
AL450380.1	EMBL	sequence_feature	1208289	1208318	.	+	.	ID=id-hemE-2;Note=PS00906 Uroporphyrinogen decarboxylase signature 1;gbkey=misc_feature;gene=hemE
AL450380.1	EMBL	sequence_feature	1208643	1208690	.	+	.	ID=id-hemE-3;Note=PS00907 Uroporphyrinogen decarboxylase signature 2;gbkey=misc_feature;gene=hemE
AL450380.1	EMBL	gene	1209287	1210642	.	+	.	ID=gene-hemY;Name=hemY;gbkey=Gene;gene=hemY;gene_biotype=protein_coding;gene_synonym=ML1044
AL450380.1	EMBL	CDS	1209287	1210642	.	+	0	ID=cds-CAC31425.1;Parent=gene-hemY;Dbxref=GOA:Q50008,InterPro:IPR002937,InterPro:IPR004572,InterPro:IPR027418,NCBI_GP:CAC31425.1;Name=CAC31425.1;Note=Identical to the previously sequenced Mycobacterium leprae protoporphyrinogen oxidase (EC 1.3.3.4) SW:PPOX_MYCLE (Q50008) (451 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 451 aa overlap. Also highly similar to many others including: Mycobacterium tuberculosis SW:PPOX_MYCTU (O53230) (426 aa)%3B Fasta score E(): 0%2C 75.8%25 identity in 429 aa overlap and Bacillus subtilis SW:PPOX_BACSU (P32397) (470 aa)%3B Fasta score E(): 2.2e-13%2C 27.1%25 identity in 458 aa overlap. Contains Pfam match to entry PF01208 URO-D%2C Uroporphyrinogen decarboxylase (URO-D).;gbkey=CDS;gene=hemY;product=protoporphyrinogen oxidase;protein_id=CAC31425.1;transl_table=11
AL450380.1	EMBL	gene	1210648	1211343	.	+	.	ID=gene-ML1045;Name=ML1045;gbkey=Gene;gene=ML1045;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1210648	1211343	.	+	0	ID=cds-CAC31426.1;Parent=gene-ML1045;Dbxref=InterPro:IPR010644,InterPro:IPR011008,UniProtKB/TrEMBL:Q9CCB2,NCBI_GP:CAC31426.1;Name=CAC31426.1;Note=Identical%2C apart from N-terminus%2C to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q50009 (EMBL:U15181) (297 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 231 aa overlap. Also highly similar to proteins of undefined function from Mycobacterium tuberculosis Rv2676c TR:P71973 (EMBL:Z80225) (231 aa)%3B Fasta score E(): 0%2C 87.4%25 identity in 231 aa overlap and Streptomyces coelicolor TR:O69830 (EMBL:AL023517) (243 aa)%3B Fasta score E(): 0%2C 61.3%25 identity in 222 aa overlap.;gbkey=CDS;gene=ML1045;product=conserved hypothetical protein;protein_id=CAC31426.1;transl_table=11
AL450380.1	EMBL	pseudogene	1211366	1212072	.	+	.	ID=gene-ML1046;Name=ML1046;gbkey=Gene;gene=ML1046;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1211366	1212072	.	+	0	ID=cds-ML1046;Parent=gene-ML1046;Note=Possible pseudogene of M. tuberculosis orthologue Rv2675c (Best blastx score 246);gbkey=CDS;gene=ML1046;product=putative methyltransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	1212166	1213036	.	+	.	ID=id-AL450380.1:1212166..1213036;Note=871 bp repeat%2C 100%25 identical to region 2329118..2329988;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	1212194	1212938	.	-	.	ID=gene-ML1047;Name=ML1047;gbkey=Gene;gene=ML1047;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1212194	1212938	.	-	0	ID=cds-ML1047;Parent=gene-ML1047;Note=Possible pseudogene of M. tuberculosis orthologue Rv3714c (Best blastx score 211);gbkey=CDS;gene=ML1047;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	1213037	1214053	.	-	.	ID=id-AL450380.1:1213037..1214053;Note=REPLEP region 6%2C 5'-end most similar to REPLEP 5%3B 3'-end most similar to REPLEP 1%2C 4 and 5;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	1213037	1213081	.	-	.	ID=id-AL450380.1:1213037..1213081;Note=45 bp REPLEP-associated sequence;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	1213082	1213962	.	-	.	ID=id-AL450380.1:1213082..1213962;Note=Dispersed repeat%2C REPLEP%2C copy 6;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	1214207	1215448	.	-	.	ID=gene-ML1048;Name=ML1048;gbkey=Gene;gene=ML1048;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1214207	1215448	.	-	0	ID=cds-ML1048;Parent=gene-ML1048;Note=Possible pseudogene of M. tuberculosis orthologue Rv2885c (Best blastx score 388);gbkey=CDS;gene=ML1048;product=transposase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1215472	1216054	.	-	.	ID=gene-ML1049;Name=ML1049;gbkey=Gene;gene=ML1049;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1215472	1216054	.	-	0	ID=cds-ML1049;Parent=gene-ML1049;Note=Possible pseudogene of M. tuberculosis orthologue resolvase Rv0605 (Best blastx score 351);gbkey=CDS;gene=ML1049;product=resolvase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1216310	1217032	.	+	.	ID=gene-ML1050;Name=ML1050;gbkey=Gene;gene=ML1050;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1216310	1217032	.	+	0	ID=cds-ML1050;Parent=gene-ML1050;Note=Possible pseudogene of M. tuberculosis orthologue Rv1191 (Best blastx score 177);gbkey=CDS;gene=ML1050;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1217109	1218539	.	+	.	ID=gene-xclC;Name=xclC;gbkey=Gene;gene=xclC;gene_biotype=protein_coding;gene_synonym=ML1051
AL450380.1	EMBL	CDS	1217109	1218539	.	+	0	ID=cds-CAC31432.1;Parent=gene-xclC;Dbxref=GOA:Q7AQA2,InterPro:IPR000873,InterPro:IPR020845,InterPro:IPR025110,UniProtKB/TrEMBL:Q7AQA2,NCBI_GP:CAC31432.1;Name=CAC31432.1;Note=Identical to the previously sequenced Mycobacterium leprae XclC TR:Q50017 (EMBL:U15181) (476 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 476 aa overlap. Also highly similar to many others including: Mycobacterium tuberculosis acyl-CoA synthase Rv1193 fadD36 TR:O05295 (EMBL:Z93777) (473 aa)%3B Fasta score E(): 0%2C 81.3%25 identity in 476 aa overlap and Escherichia coli long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) SW:LCFA_ECOLI (P29212) (561 aa)%3B Fasta score E(): 1.3e-28%2C 31.7%25 identity in 378 aa overlap. Contains Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme. Contains PS00455 Putative AMP-binding domain signature. Contains PS00038 Myc-type%2C 'helix-loop-helix' dimerization domain signature.;gbkey=CDS;gene=xclC;product=acyl-CoA synthase;protein_id=CAC31432.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1217190	1218335	.	+	.	ID=id-xclC;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score 65.80%2C E-value 4.4e-19;gbkey=misc_feature;gene=xclC
AL450380.1	EMBL	sequence_feature	1217190	1217237	.	+	.	ID=id-xclC-2;Note=PS00038 Myc-type%2C 'helix-loop-helix' dimerization domain signature;gbkey=misc_feature;gene=xclC
AL450380.1	EMBL	sequence_feature	1217517	1217552	.	+	.	ID=id-xclC-3;Note=PS00455 Putative AMP-binding domain signature;gbkey=misc_feature;gene=xclC
AL450380.1	EMBL	gene	1218562	1219827	.	-	.	ID=gene-ML1052;Name=ML1052;gbkey=Gene;gene=ML1052;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1218562	1219827	.	-	0	ID=cds-CAC31433.1;Parent=gene-ML1052;Dbxref=InterPro:IPR025736,UniProtKB/TrEMBL:Q9CCB1,NCBI_GP:CAC31433.1;Name=CAC31433.1;Note=Previously sequenced Mycobacterium leprae hypothetical protein TR:Q50018 (EMBL:U15181) (517 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 421 aa overlap. Also highly similar to several hypothetical proteins from Mycobacterium tuberculosis e.g. Rv1194c TR:O05296 (EMBL:Z93777) (421 aa)%3B Fasta score E(): 0%2C 70.1%25 identity in 421 aa overlap.;gbkey=CDS;gene=ML1052;product=conserved hypothetical protein;protein_id=CAC31433.1;transl_table=11
AL450380.1	EMBL	repeat_region	1220160	1222101	.	+	.	ID=id-AL450380.1:1220160..1222101;Note=100%25 identical to two adjacent regions separated by 619 bp at positions 1382838..1381770 (1068/1070 bp identical with 1 bp gap) and 1381151..1380273 (879 bp overlap);gbkey=repeat_region
AL450380.1	EMBL	repeat_region	1220160	1221222	.	+	.	ID=id-AL450380.1:1220160..1221222;Note=1063 bp repeat. 100%25 identical to positions 1382838..1381770 (1068/1070 bp identical with 1 bp gap);gbkey=repeat_region
AL450380.1	EMBL	ribosome_entry_site	1220362	1220367	.	+	.	ID=id-AL450380.1:1220362..1220367;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1220374	1220673	.	+	.	ID=gene-ML1053;Name=ML1053;gbkey=Gene;gene=ML1053;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1220374	1220673	.	+	0	ID=cds-CAC31434.1;Parent=gene-ML1053;Dbxref=InterPro:IPR000084,UniProtKB/TrEMBL:Q7AQ88,NCBI_GP:CAC31434.1;Name=CAC31434.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49943 (EMBL:U15180) (99 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 99 aa overlap. Also highly similar to the whole or just the N-terminus of many Mycobacterium tuberculosis PE-family proteins e.g. TR:O53938 (EMBL:AL022021) (99 aa)%3B Fasta score E(): 2e-11%2C 46.7%25 identity in 92 aa overlap and TR:P71664 (EMBL:Z80108) (576 aa)%3B Fasta score E(): 3.2e-10%2C 44.6%25 identity in 92 aa overlap.;gbkey=CDS;gene=ML1053;product=conserved hypothetical protein;protein_id=CAC31434.1;transl_table=11
AL450380.1	EMBL	pseudogene	1220730	1221367	.	+	.	ID=gene-ML1054;Name=ML1054;gbkey=Gene;gene=ML1054;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1220730	1221367	.	+	0	ID=cds-ML1054;Parent=gene-ML1054;Note=Similar to Mycobacterium leprae PPE-family protein TR:Q9Z5K0.;gbkey=CDS;gene=ML1054;product=possible PPE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	1221223	1222101	.	+	.	ID=id-AL450380.1:1221223..1222101;Note=879 bp repeat. 100%25 identical to complement(1380273..1381151);gbkey=repeat_region
AL450380.1	EMBL	gene	1221433	1221735	.	+	.	ID=gene-ML1055;Name=ML1055;gbkey=Gene;gene=ML1055;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1221433	1221735	.	+	0	ID=cds-CAC31436.1;Parent=gene-ML1055;Dbxref=InterPro:IPR010310,NCBI_GP:CAC31436.1;Name=CAC31436.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49945 (EMBL:U15180) (100 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 100 aa overlap. Also similar to another Mycobacterium leprae hypothetical protein TR:Q9S382 (EMBL:AL049191) (94 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 94 aa overlap and several proteins of undefined function from Mycobacterium tuberculosis e.g. TR:O05299 (EMBL:Z93777) (98 aa)%3B Fasta score E(): 1.7e-20%2C 58.3%25 identity in 96 aa overlap.;gbkey=CDS;gene=ML1055;product=conserved hypothetical protein;protein_id=CAC31436.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1221772	1221776	.	+	.	ID=id-AL450380.1:1221772..1221776;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1221787	1222074	.	+	.	ID=gene-ML1056;Name=ML1056;gbkey=Gene;gene=ML1056;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1221787	1222074	.	+	0	ID=cds-CAC31437.1;Parent=gene-ML1056;Dbxref=InterPro:IPR009416,InterPro:IPR010310,NCBI_GP:CAC31437.1;Name=CAC31437.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49946 (EMBL:U15180) (95 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 95 aa overlap. Also highly similar to several proteins of undefined function from Mycobacterium tuberculosis e.g. Rv1793 TR:O53942 (EMBL:AL022021) (94 aa)%3B Fasta score E(): 4.3e-23%2C 65.2%25 identity in 92 aa overlap.;gbkey=CDS;gene=ML1056;product=conserved hypothetical protein;protein_id=CAC31437.1;transl_table=11
AL450380.1	EMBL	gene	1222249	1222602	.	+	.	ID=gene-ML1057;Name=ML1057;gbkey=Gene;gene=ML1057;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1222249	1222602	.	+	0	ID=cds-CAC31438.1;Parent=gene-ML1057;Dbxref=UniProtKB/TrEMBL:Q7AQA0,NCBI_GP:CAC31438.1;Name=CAC31438.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49947 (EMBL:U15180) (117 aa)%3B Fasta score E(): 0%2C 99.1%25 identity in 117 aa overlap.;gbkey=CDS;gene=ML1057;product=hypothetical protein;protein_id=CAC31438.1;transl_table=11
AL450380.1	EMBL	gene	1222693	1223646	.	-	.	ID=gene-ML1058;Name=ML1058;gbkey=Gene;gene=ML1058;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1222693	1223646	.	-	0	ID=cds-CAC31439.1;Parent=gene-ML1058;Dbxref=GOA:Q7AQ99,InterPro:IPR011004,InterPro:IPR019875,InterPro:IPR026586,UniProtKB/TrEMBL:Q7AQ99,NCBI_GP:CAC31439.1;Name=CAC31439.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49948 (EMBL:U15180) (317 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 317 aa overlap and highly similar to Mycobacterium tuberculosis TR:O05302 (EMBL:Z93777) (317 aa)%3B Fasta score E(): 0%2C 84.9%25 identity in 317 aa overlap. The C-terminus of this protein is also similar to many different transferases e.g. Haemophilus influenzae SW:DAPD_HAEIN (P45284) (275 aa)%3B Fasta score E(): 0.00048%2C 26.7%25 identity in 131 aa overlap 2%2C3%2C4%2C5-tetrahydropyridine-2-carboxylate N-succinyltransferase (EC 2.3.1.117).;gbkey=CDS;gene=ML1058;product=possible tranferase;protein_id=CAC31439.1;transl_table=11
AL450380.1	EMBL	gene	1223700	1224764	.	+	.	ID=gene-dapE;Name=dapE;gbkey=Gene;gene=dapE;gene_biotype=protein_coding;gene_synonym=ML1059
AL450380.1	EMBL	CDS	1223700	1224764	.	+	0	ID=cds-CAC31440.1;Parent=gene-dapE;Dbxref=GOA:Q9CCB0,InterPro:IPR001261,InterPro:IPR002933,InterPro:IPR010174,InterPro:IPR011650,UniProtKB/TrEMBL:Q9CCB0,NCBI_GP:CAC31440.1;Name=CAC31440.1;Note=Identical to the previously sequenced Mycobacterium leprae TR:Q49949 (EMBL:U15180) (400 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 354 aa overlap. Also highly similar to succinyl-diaminopimelate desuccinylases from Mycobacterium tuberculosis Rv1202 TR:O05303 (EMBL:Z93777) (354 aa)%3B Fasta score E(): 0%2C 86.7%25 identity in 354 aa overlap and Corynebacterium glutamicum SW:DAPE_CORG (Q59284) (369 aa)%3B Fasta score E(): 0%2C 56.3%25 identity in 359 aa overlapL. Contains Pfam match to entry PF01546 Peptidase_M20%2C Peptidase family M20/M25/M40. Contains PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1.;gbkey=CDS;gene=dapE;product=succinyl-diaminopimelate desuccinylase;protein_id=CAC31440.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1223733	1224617	.	+	.	ID=id-dapE;Note=Pfam match to entry PF01546 Peptidase_M20%2C Peptidase family M20/M25/M40%2C score 208.80%2C E-value 6e-59;gbkey=misc_feature;gene=dapE
AL450380.1	EMBL	sequence_feature	1223889	1223918	.	+	.	ID=id-dapE-2;Note=PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1;gbkey=misc_feature;gene=dapE
AL450380.1	EMBL	pseudogene	1224793	1226253	.	-	.	ID=gene-ML1060;Name=ML1060;gbkey=Gene;gene=ML1060;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1224793	1226253	.	-	0	ID=cds-ML1060;Parent=gene-ML1060;Note=Possible pseudogene of M. tuberculosis orthologue Rv1204c (Best blastx score 256);gbkey=CDS;gene=ML1060;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1226442	1227005	.	+	.	ID=gene-ML1061;Name=ML1061;gbkey=Gene;gene=ML1061;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1226442	1227005	.	+	0	ID=cds-CAC31442.1;Parent=gene-ML1061;Dbxref=InterPro:IPR005269,UniProtKB/TrEMBL:Q7AQ98,NCBI_GP:CAC31442.1;Name=CAC31442.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49952 (EMBL:U15180) (187 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 187 aa overlap. Also highly similar to Mycobacterium tuberculosis TR:O05306 (EMBL:Z93777) (187 aa)%3B Fasta score E(): 0%2C 72.4%25 identity in 174 aa overlap.;gbkey=CDS;gene=ML1061;product=conserved hypothetical protein;protein_id=CAC31442.1;transl_table=11
AL450380.1	EMBL	pseudogene	1227056	1228573	.	+	.	ID=gene-fadD6;Name=fadD6;gbkey=Gene;gene=fadD6;gene_biotype=pseudogene;gene_synonym=ML1062;pseudo=true
AL450380.1	EMBL	CDS	1227056	1228573	.	+	0	ID=cds-fadD6;Parent=gene-fadD6;Note=Possible pseudogene of M. tuberculosis orthologue fadD6 (Best blastx score 281);gbkey=CDS;gene=fadD6;product=acyl CoA-ligase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1228776	1229651	.	+	.	ID=gene-folP2;Name=folP2;gbkey=Gene;gene=folP2;gene_biotype=protein_coding;gene_synonym=ML1063
AL450380.1	EMBL	CDS	1228776	1229651	.	+	0	ID=cds-CAC31444.1;Parent=gene-folP2;Dbxref=GOA:P0C0X2,InterPro:IPR000489,InterPro:IPR006390,InterPro:IPR011005,NCBI_GP:CAC31444.1;Name=CAC31444.1;Note=Identical to the previously sequenced Mycobacterium leprae dihydropteroate synthase (EC 2.5.1.15) SWDHPS_MYCLE:. Also highly similar to dihydropteroate synthases from Mycobacterium tuberculosis Rv1207 SW:DHP2_MYCTU (O05308) (318 aa)%3B Fasta score E(): 0%2C 86.2%25 identity in 290 aa overlap and Escherichia coli SW:DHPS_ECOLI (P26282) (282 aa)%3B Fasta score E(): 7.2e-24%2C 34.4%25 identity in 270 aa overlap. Contains Pfam match to entry PF00809 DHPS%2C Dihydropteroate synthase. Contains PS00793 Dihydropteroate synthase signature 2. Contains PS00792 Dihydropteroate synthase signature 1.%3B~Similar to ML0224;gbkey=CDS;gene=folP2;product=dihydropteroate synthase;protein_id=CAC31444.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1228824	1228871	.	+	.	ID=id-folP2;Note=PS00792 Dihydropteroate synthase signature 1;gbkey=misc_feature;gene=folP2
AL450380.1	EMBL	sequence_feature	1228827	1229603	.	+	.	ID=id-folP2-2;Note=Pfam match to entry PF00809 DHPS%2C Dihydropteroate synthase%2C score 457.60%2C E-value 1e-133;gbkey=misc_feature;gene=folP2
AL450380.1	EMBL	sequence_feature	1228926	1228967	.	+	.	ID=id-folP2-3;Note=PS00793 Dihydropteroate synthase signature 2;gbkey=misc_feature;gene=folP2
AL450380.1	EMBL	gene	1229648	1230628	.	+	.	ID=gene-ML1064;Name=ML1064;gbkey=Gene;gene=ML1064;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1229648	1230628	.	+	0	ID=cds-CAC31445.1;Parent=gene-ML1064;Dbxref=InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:Q9CCA9,NCBI_GP:CAC31445.1;Name=CAC31445.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49955 (EMBL:U15180) (318 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 317 aa overlap. Also highly similar to Mycobacterium tuberculosis hypothetical protein Rv1208 TR:O05309 (EMBL:Z93777) (324 aa)%3B Fasta score E(): 0%2C 79.8%25 identity in 327 aa overlap.;gbkey=CDS;gene=ML1064;product=conserved hypothetical protein;protein_id=CAC31445.1;transl_table=11
AL450380.1	EMBL	gene	1230644	1230988	.	+	.	ID=gene-ML1065;Name=ML1065;gbkey=Gene;gene=ML1065;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1230644	1230988	.	+	0	ID=cds-CAC31446.1;Parent=gene-ML1065;Dbxref=InterPro:IPR019933,UniProtKB/TrEMBL:Q7AQ97,NCBI_GP:CAC31446.1;Name=CAC31446.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49955. Also highly similar to Mycobacterium tuberculosis hypothetical protein Rv1209 TR:O05310 (EMBL:Z93777) (122 aa)%3B Fasta score E(): 1.3e-27%2C 78.6%25 identity in 112 aa overlap. Note the N-terminus of this protein is rich in the amino acid valine producing a possible membrane spanning hydrophobic domain.;gbkey=CDS;gene=ML1065;product=conserved hypothetical protein;protein_id=CAC31446.1;transl_table=11
AL450380.1	EMBL	gene	1230985	1231563	.	+	.	ID=gene-tagA;Name=tagA;gbkey=Gene;gene=tagA;gene_biotype=protein_coding;gene_synonym=ML1066
AL450380.1	EMBL	CDS	1230985	1231563	.	+	0	ID=cds-CAC31447.1;Parent=gene-tagA;Dbxref=GOA:Q7AQ96,InterPro:IPR004597,InterPro:IPR005019,InterPro:IPR011257,UniProtKB/TrEMBL:Q7AQ96,NCBI_GP:CAC31447.1;Name=CAC31447.1;Note=Identical to the previously sequenced Mycobacterium leprae TR:Q49957 (EMBL:U15180) (192 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 192 aa overlap. Also highly similar to DNA-3-methyladenine glycosidases from Mycobacterium tuberculosis Rv1210 TR:O05311 (EMBL:Z93777) (204 aa)%3B Fasta score E(): 0%2C 80.2%25 identity in 192 aa overlap and Escherichia coli SW:3MG1_ECOLI (P05100) (187 aa)%3B Fasta score E(): 1.8e-27%2C 43.8%25 identity in 185 aa overlap.;gbkey=CDS;gene=tagA;product=DNA-3-methyladenine glycosidase I;protein_id=CAC31447.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1231769	1231772	.	+	.	ID=id-AL450380.1:1231769..1231772;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1231777	1232004	.	+	.	ID=gene-ML1067;Name=ML1067;gbkey=Gene;gene=ML1067;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1231777	1232004	.	+	0	ID=cds-CAC31448.1;Parent=gene-ML1067;Dbxref=InterPro:IPR021465,UniProtKB/TrEMBL:Q7AQ95,NCBI_GP:CAC31448.1;Name=CAC31448.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49958 (EMBL:U15180) (75 aa)%3B Fasta score E(): 1.9e-29%2C 100.0%25 identity in 75 aa overlap. Also highly similar to Mycobacterium tuberculosis hypothetical protein Rv1211 TR:O05312 (EMBL:Z93777) (75 aa)%3B Fasta score E(): 1.6e-26%2C 90.7%25 identity in 75 aa overlap.;gbkey=CDS;gene=ML1067;product=conserved hypothetical protein;protein_id=CAC31448.1;transl_table=11
AL450380.1	EMBL	pseudogene	1232039	1233169	.	-	.	ID=gene-ML1068;Name=ML1068;gbkey=Gene;gene=ML1068;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1232039	1233169	.	-	0	ID=cds-ML1068;Parent=gene-ML1068;Note=Possible pseudogene of M. tuberculosis orthologue Rv1212c (Best blastx score 834);gbkey=CDS;gene=ML1068;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1233349	1234563	.	+	.	ID=gene-glgC;Name=glgC;gbkey=Gene;gene=glgC;gene_biotype=protein_coding;gene_synonym=ML1069
AL450380.1	EMBL	CDS	1233349	1234563	.	+	0	ID=cds-CAC31450.1;Parent=gene-glgC;Dbxref=GOA:Q9CCA8,InterPro:IPR005835,InterPro:IPR005836,InterPro:IPR011004,InterPro:IPR011831,InterPro:IPR023049,InterPro:IPR029044,NCBI_GP:CAC31450.1;Name=CAC31450.1;Note=Identical to the previously sequenced Mycobacterium leprae GlgC TR:Q49961 (EMBL:U15180) (419 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 404 aa overlap. Also highly similar to many glucose-1-phosphate adenylyltransferases involved in glycogen biosynthesis e.g. from Mycobacterium tuberculosis Rv1213 SW:GLGC_MYCTU (O05314) (404 aa)%3B Fasta score E(): 0%2C 92.6%25 identity in 404 aa overlap and Escherichia coli SW:GLGC_ECOLI (P00584) (430 aa)%3B Fasta score E(): 0%2C 39.6%25 identity in 407 aa overlap. Contains Pfam match to entry PF00483 NTP_transferase%2C Nucleotidyl transferase. Contains PS00809 ADP-glucose pyrophosphorylase signature 2. Contains PS00810 ADP-glucose pyrophosphorylase signature 3. Contains PS00808 ADP-glucose pyrophosphorylase signature 1.;gbkey=CDS;gene=glgC;product=probable glucose-1-phosphate adenylyltransferase;protein_id=CAC31450.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1233370	1234185	.	+	.	ID=id-glgC;Note=Pfam match to entry PF00483 NTP_transferase%2C Nucleotidyl transferase%2C score 324.90%2C E-value 9.4e-94;gbkey=misc_feature;gene=glgC
AL450380.1	EMBL	sequence_feature	1233385	1233444	.	+	.	ID=id-glgC-2;Note=PS00808 ADP-glucose pyrophosphorylase signature 1;gbkey=misc_feature;gene=glgC
AL450380.1	EMBL	sequence_feature	1233640	1233666	.	+	.	ID=id-glgC-3;Note=PS00809 ADP-glucose pyrophosphorylase signature 2;gbkey=misc_feature;gene=glgC
AL450380.1	EMBL	sequence_feature	1233934	1233966	.	+	.	ID=id-glgC-4;Note=PS00810 ADP-glucose pyrophosphorylase signature 3;gbkey=misc_feature;gene=glgC
AL450380.1	EMBL	gene	1234637	1235290	.	+	.	ID=gene-ML1070;Name=ML1070;gbkey=Gene;gene=ML1070;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1234637	1235290	.	+	0	ID=cds-CAC31451.1;Parent=gene-ML1070;Dbxref=GOA:Q7AQ94,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR011075,InterPro:IPR015893,UniProtKB/TrEMBL:Q7AQ94,NCBI_GP:CAC31451.1;Name=CAC31451.1;Note=Identical to the previously sequenced Mycobacterium leprae TR:Q49962 (EMBL:U15180) (217 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 217 aa overlap. Also highly similar to many proteins of undefined function e.g. Mycobacterium tuberculosis possible regulatory protein Rv3855 TR:P96222 (EMBL:Z83864) (216 aa)%3B Fasta score E(): 0%2C 60.4%25 identity in 202 aa overlap. Contains a probable helix-turn-helix motif at aa 49-70 (Score 1321%2C SD +3.69) Contains Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family.%3B~Similar to ML0064;gbkey=CDS;gene=ML1070;product=putative TetR-family transcriptional regulator;protein_id=CAC31451.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1234733	1234873	.	+	.	ID=id-ML1070;Note=Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family%2C score 66.90%2C E-value 4.2e-16;gbkey=misc_feature;gene=ML1070
AL450380.1	EMBL	pseudogene	1235298	1235645	.	-	.	ID=gene-ML1071;Name=ML1071;gbkey=Gene;gene=ML1071;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1235298	1235645	.	-	0	ID=cds-ML1071;Parent=gene-ML1071;Note=Possible pseudogene of M. tuberculosis orthologue Rv1216c (Best blastx score 244);gbkey=CDS;gene=ML1071;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1235874	1236692	.	-	.	ID=gene-ML1072;Name=ML1072;gbkey=Gene;gene=ML1072;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1235874	1236692	.	-	0	ID=cds-ML1072;Parent=gene-ML1072;Note=Possible pseudogene of M. tuberculosis orthologue Rv1217c (Best blastx score 362);gbkey=CDS;gene=ML1072;product=probable integral membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1236830	1237668	.	-	.	ID=gene-ML1073;Name=ML1073;gbkey=Gene;gene=ML1073;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1236830	1237668	.	-	0	ID=cds-ML1073;Parent=gene-ML1073;Note=Possible pseudogene of M. tuberculosis orthologue Rv1218c (Best blastx score 278);gbkey=CDS;gene=ML1073;product=probable ABC transmembrane transport protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1237768	1238309	.	-	.	ID=gene-ML1074;Name=ML1074;gbkey=Gene;gene=ML1074;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1237768	1238309	.	-	0	ID=cds-ML1074;Parent=gene-ML1074;Note=Possible pseudogene of M. tuberculosis orthologue Rv1219c (Best blastx score 232);gbkey=CDS;gene=ML1074;product=putative transcriptional regulator (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1238386	1239060	.	-	.	ID=gene-ML1075;Name=ML1075;gbkey=Gene;gene=ML1075;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1238386	1239060	.	-	0	ID=cds-CAC31456.1;Parent=gene-ML1075;Dbxref=GOA:Q9CCA7,InterPro:IPR002935,InterPro:IPR029063,NCBI_GP:CAC31456.1;Name=CAC31456.1;Note=Previously sequenced Mycobacterium leprae TR:Q49969 (EMBL:U15180) (136 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 136 aa overlap. Also highly similar to Mycobacterium tuberculosis possible methyltransferase Rv1220c TR:O33219 (EMBL:Z98260) (215 aa)%3B Fasta score E(): 0%2C 85.5%25 identity in 214 aa overlap and Streptomyces mycarofaciens O-methyltransferase (EC 2.1.1.-) involved in the synthesis of the macrolide antibiotic midecamycin SW:MDMC_STRMY (Q00719) (221 aa)%3B Fasta score E(): 2.3e-11%2C 30.5%25 identity in 223 aa overlap. Contains Pfam match to entry PF01596 Methyltransf_3%2C O-methyltransferase.;gbkey=CDS;gene=ML1075;product=probable O-methyltransferase;protein_id=CAC31456.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1238389	1238985	.	-	.	ID=id-ML1075;Note=Pfam match to entry PF01596 Methyltransf_3%2C O-methyltransferase%2C score 16.80%2C E-value 3e-10;gbkey=misc_feature;gene=ML1075
AL450380.1	EMBL	gene	1239340	1240131	.	+	.	ID=gene-sigE;Name=sigE;gbkey=Gene;gene=sigE;gene_biotype=protein_coding;gene_synonym=ML1076
AL450380.1	EMBL	CDS	1239340	1240131	.	+	0	ID=cds-CAC31457.1;Parent=gene-sigE;Dbxref=GOA:Q9CCA6,InterPro:IPR007627,InterPro:IPR011991,InterPro:IPR013249,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,UniProtKB/TrEMBL:Q9CCA6,NCBI_GP:CAC31457.1;Name=CAC31457.1;Note=Highly similar to many proposed ECF-family RNA-polymerase sigma factors including: Mycobacterium tuberculosis SigE TR:O06289 (EMBL:U87242) (257 aa)%3B Fasta score E(): 0%2C 82.1%25 identity in 252 aa overlap%2C Mycobacterium avium SigE TR:O05735 (EMBL:U87308) (251 aa)%3B Fasta score E(): 0%2C 80.6%25 identity in 247 aa overlap and Bacillus subtilis SW:SIGW_BACSU (Q45585) (187 aa)%3B Fasta score E(): 2.9e-16%2C 35.7%25 identity in 171 aa overlap. Contains a probable helix-turn-helix motif at aa 213-234 (Score 1147%2C SD +3.09) Contains Pfam match to entry PF00776 Sigma70_ECF%2C Sigma-70 factor (ECF subfamily).;gbkey=CDS;gene=sigE;product=ECF subfamily sigma subunit;protein_id=CAC31457.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1239640	1239804	.	+	.	ID=id-sigE;Note=Pfam match to entry PF00776 Sigma70_ECF%2C Sigma-70 factor (ECF subfamily)%2C score 97.30%2C E-value 3.1e-25;gbkey=misc_feature;gene=sigE
AL450380.1	EMBL	gene	1240278	1240697	.	+	.	ID=gene-ML1077;Name=ML1077;gbkey=Gene;gene=ML1077;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1240278	1240697	.	+	0	ID=cds-CAC31458.1;Parent=gene-ML1077;Dbxref=UniProtKB/TrEMBL:Q9CCA5,NCBI_GP:CAC31458.1;Name=CAC31458.1;Note=Highly similar to several proteins of undefined function e.g. from Mycobacterium avium TR:O05736 (EMBL:U87308) (133 aa)%3B Fasta score E(): 0%2C 71.7%25 identity in 138 aa overlap%2C Mycobacterium smegmatis TR:O05768 (EMBL:U87307) (145 aa)%3B Fasta score E(): 0%2C 66.2%25 identity in 139 aa overlap and Mycobacterium tuberculosis Rv1222 TR:O06290 (EMBL:U87242) (193 aa)%3B Fasta score E(): 0%2C 70.7%25 identity in 150 aa overlap.;gbkey=CDS;gene=ML1077;product=conserved hypothetical protein;protein_id=CAC31458.1;transl_table=11
AL450380.1	EMBL	gene	1240772	1242373	.	+	.	ID=gene-htrA;Name=htrA;gbkey=Gene;gene=htrA;gene_biotype=protein_coding;gene_synonym=ML1078
AL450380.1	EMBL	CDS	1240772	1242373	.	+	0	ID=cds-CAC31459.1;Parent=gene-htrA;Dbxref=GOA:Q7AQ93,InterPro:IPR001478,InterPro:IPR001940,InterPro:IPR009003,UniProtKB/TrEMBL:Q7AQ93,NCBI_GP:CAC31459.1;Name=CAC31459.1;Note=Identical to the previously sequenced Mycobacterium leprae TR:Q49972 (EMBL:U15180) (533 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 533 aa overlap. Also highly similar to Mycobacterium tuberculosis possible serine protease HtrA TR:O06291 (EMBL:Z98260) (549 aa)%3B Fasta score E(): 0%2C 81.8%25 identity in 533 aa overlap. The C-terminus of this CDS is similar to several proven proteases e.g. Escherichia coli SW:HTRA_ECOLI (P09376) (474 aa)%3B Fasta score E(): 2e-26%2C 35.3%25 identity in 283 aa overlap. Contains a possible membrane spanning hydrophobic domain. Contains Pfam match to entry PF00595 PDZ%2C PDZ domain (Also known as DHR or GLGF).. Contains Pfam match to entry PF00089 trypsin%2C Trypsin. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=htrA;product=possinble serine protease;protein_id=CAC31459.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1241456	1242070	.	+	.	ID=id-htrA;Note=Pfam match to entry PF00089 trypsin%2C Trypsin%2C score 95.30%2C E-value 2.1e-29;gbkey=misc_feature;gene=htrA
AL450380.1	EMBL	sequence_feature	1241984	1242007	.	+	.	ID=id-htrA-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=htrA
AL450380.1	EMBL	sequence_feature	1242077	1242325	.	+	.	ID=id-htrA-3;Note=Pfam match to entry PF00595 PDZ%2C PDZ domain (Also known as DHR or GLGF).%2C score 33.30%2C E-value 5.5e-06;gbkey=misc_feature;gene=htrA
AL450380.1	EMBL	gene	1242373	1242735	.	+	.	ID=gene-ML1079;Name=ML1079;gbkey=Gene;gene=ML1079;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1242373	1242735	.	+	0	ID=cds-CAC31460.1;Parent=gene-ML1079;Dbxref=GOA:Q9CCA4,InterPro:IPR003998,InterPro:IPR018448,UniProtKB/TrEMBL:Q9CCA4,NCBI_GP:CAC31460.1;Name=CAC31460.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49973 (EMBL:U15180) (120 aa)%3B Fasta score E(): 0%2C 98.3%25 identity in 120 aa overlap. Also highly similar to Mycobacterium tuberculosis hypothetical protein Rv1224 TR:O33220 (EMBL:Z98260) (131 aa)%3B Fasta score E(): 0%2C 74.0%25 identity in 131 aa overlap. Also similar%2C in parts%2C to Escherichia coli TatB or MttA2%2C Sec-independent protein translocase%2C TR:O69415 (EMBL:AJ005830) (171 aa)%3B Fasta score E(): 0.00022%2C 29.8%25 identity in 121 aa overlap. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=ML1079;product=possible secreted protein;protein_id=CAC31460.1;transl_table=11
AL450380.1	EMBL	repeat_region	1242673	1243696	.	-	.	ID=id-AL450380.1:1242673..1243696;Note=REPLEP region 7%2C 3'-end most similar to 3'-end of REPLEP 12;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	1242751	1242788	.	-	.	ID=id-AL450380.1:1242751..1242788;Note=38 bp subsequence of 45 bp REPLEP associated sequence;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	1242789	1243669	.	-	.	ID=id-AL450380.1:1242789..1243669;Note=Dispersed repeat%2C REPLEP%2C copy 7;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	1243670	1243698	.	+	.	ID=id-AL450380.1:1243670..1243698;Note=29 bp subsequence of 45 bp REPLEP-associated sequence;gbkey=repeat_region
AL450380.1	EMBL	gene	1243755	1244906	.	-	.	ID=gene-mrp;Name=mrp;gbkey=Gene;gene=mrp;gene_biotype=protein_coding;gene_synonym=ML1080
AL450380.1	EMBL	CDS	1243755	1244906	.	-	0	ID=cds-CAC31461.1;Parent=gene-mrp;Dbxref=GOA:P53382,InterPro:IPR000808,InterPro:IPR002744,InterPro:IPR015223,InterPro:IPR019591,InterPro:IPR027417,NCBI_GP:CAC31461.1;Name=CAC31461.1;Note=Previously sequenced Mycobacterium leprae SW:MRP_MYCLE (P53382) (435 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 383 aa overlap. Similar to many other MRP-family proteins%2C the function of which is unknown%2C e.g. Mycobacterium tuberculosis Rv1229c SW:MRP_MYCTU (O33225) (390 aa)%3B Fasta score E(): 0%2C 82.1%25 identity in 374 aa overlap and Escherichia coli SW:MRP_ECOLI (P21590) (379 aa)%3B Fasta score E(): 8.3e-30%2C 33.3%25 identity in 360 aa overlap. Contains Pfam match to entry PF01883 DUF59%2C Domain of unknown function. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS01215 Mrp family signature.;gbkey=CDS;gene=mrp;product=MRP-family ATP-binding protein;protein_id=CAC31461.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1244190	1244240	.	-	.	ID=id-mrp;Note=PS01215 Mrp family signature;gbkey=misc_feature;gene=mrp
AL450380.1	EMBL	sequence_feature	1244505	1244528	.	-	.	ID=id-mrp-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=mrp
AL450380.1	EMBL	sequence_feature	1244610	1244879	.	-	.	ID=id-mrp-3;Note=Pfam match to entry PF01883 DUF59%2C Domain of unknown function%2C score 22.70%2C E-value 6.2e-06;gbkey=misc_feature;gene=mrp
AL450380.1	EMBL	pseudogene	1245006	1245560	.	-	.	ID=gene-ML1081;Name=ML1081;gbkey=Gene;gene=ML1081;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1245006	1245560	.	-	0	ID=cds-ML1081;Parent=gene-ML1081;Note=Possible pseudogene of M. tuberculosis orthologue Rv1230c (Best blastx score 149);gbkey=CDS;gene=ML1081;product=possible membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1245744	1246192	.	-	.	ID=gene-ML1082;Name=ML1082;gbkey=Gene;gene=ML1082;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1245744	1246192	.	-	0	ID=cds-ML1082;Parent=gene-ML1082;Note=Possible pseudogene of M. tuberculosis orthologue Rv1231c (Best blastx score 179);gbkey=CDS;gene=ML1082;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1246217	1246767	.	-	.	ID=gene-ML1083;Name=ML1083;gbkey=Gene;gene=ML1083;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1246217	1246767	.	-	0	ID=cds-ML1083;Parent=gene-ML1083;Note=Possible pseudogene of M. tuberculosis orthologue Rv1232c (Best blastx score 228);gbkey=CDS;gene=ML1083;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1246851	1247465	.	-	.	ID=gene-ML1084;Name=ML1084;gbkey=Gene;gene=ML1084;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1246851	1247465	.	-	0	ID=cds-ML1084;Parent=gene-ML1084;Note=Possible pseudogene of M. tuberculosis orthologue Rv1233c (Best blastx score 522);gbkey=CDS;gene=ML1084;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1247769	1248296	.	+	.	ID=gene-ML1085;Name=ML1085;gbkey=Gene;gene=ML1085;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1247769	1248296	.	+	0	ID=cds-ML1085;Parent=gene-ML1085;Note=Possible pseudogene of M. tuberculosis orthologue Rv1234 (Best blastx score 132);gbkey=CDS;gene=ML1085;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1248317	1248324	.	+	.	ID=id-AL450380.1:1248317..1248324;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1248325	1249731	.	+	.	ID=gene-ML1086;Name=ML1086;gbkey=Gene;gene=ML1086;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1248325	1249731	.	+	0	ID=cds-CAC31467.1;Parent=gene-ML1086;Dbxref=GOA:Q9CCA3,InterPro:IPR006059,UniProtKB/TrEMBL:Q9CCA3,NCBI_GP:CAC31467.1;Name=CAC31467.1;Note=Previously sequenced Mycobacterium leprae TR:Q49975 (EMBL:U15180) (469 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 468 aa overlap. Also similar to many solute-binding transport proteins e.g. from Mycobacterium tuberculosis Rv1235 TR:O31095 (EMBL:AF028830) (468 aa)%3B Fasta score E(): 0%2C 77.6%25 identity in 469 aa overlap and Escherichia coli SW:MALE_ECOLI (P02928) (396 aa)%3B Fasta score E(): 0.00081%2C 23.4%25 identity in 295 aa overlap. Contains a possible N-terminal signal sequence and an appropriately positioned Prokaryotic membrane lipoprotein lipid attachment site. Contains Pfam match to entry PF01547 SBP_bacterial_1%2C Bacterial extracellular solute-binding protein. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=ML1086;product=probable solute-binding transport lipoprotein;protein_id=CAC31467.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1248370	1248402	.	+	.	ID=id-ML1086;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=ML1086
AL450380.1	EMBL	sequence_feature	1248742	1249596	.	+	.	ID=id-ML1086-2;Note=Pfam match to entry PF01547 SBP_bacterial_1%2C Bacterial extracellular solute-binding protein%2C score 193.60%2C E-value 3e-54;gbkey=misc_feature;gene=ML1086
AL450380.1	EMBL	gene	1249760	1250674	.	+	.	ID=gene-ML1087;Name=ML1087;gbkey=Gene;gene=ML1087;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1249760	1250674	.	+	0	ID=cds-CAC31468.1;Parent=gene-ML1087;Dbxref=GOA:Q9CCA2,InterPro:IPR000515,UniProtKB/TrEMBL:Q9CCA2,NCBI_GP:CAC31468.1;Name=CAC31468.1;Note=Previously sequenced Mycobacterium leprae MalF TR:Q49976 (EMBL:U15180) (310 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 304 aa overlap. Also highly similar to many putative membrane transport proteins including: Mycobacterium tuberculosis probable sugar transport protein Rv1236 TR:O50452 (EMBL:AL021006) (307 aa)%3B Fasta score E(): 0%2C 81.8%25 identity in 292 aa overlap and Thermococcus litoralis inner membrane protein MalF TR:O51924 (EMBL:AF012836) (300 aa)%3B Fasta score E(): 0%2C 39.1%25 identity in 279 aa overlap. Contains multiple possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component.;gbkey=CDS;gene=ML1087;product=probable ABC-transport protein%2C inner membrane component;protein_id=CAC31468.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1250318	1250545	.	+	.	ID=id-ML1087;Note=Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component%2C score 38.40%2C E-value 1.6e-07;gbkey=misc_feature;gene=ML1087
AL450380.1	EMBL	ribosome_entry_site	1250651	1250657	.	+	.	ID=id-ML1087-2;Parent=gene-ML1087;gbkey=regulatory;gene=ML1087;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1250664	1251527	.	+	.	ID=gene-ML1088;Name=ML1088;gbkey=Gene;gene=ML1088;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1250664	1251527	.	+	0	ID=cds-CAC31469.1;Parent=gene-ML1088;Dbxref=GOA:Q9CCA1,InterPro:IPR000515,UniProtKB/TrEMBL:Q9CCA1,NCBI_GP:CAC31469.1;Name=CAC31469.1;Note=Previously sequenced Mycobacterium leprae MalG TR:Q49977 (EMBL:U15180) (296 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 287 aa overlap. Also highly similar to many putative membrane transport proteins including: Mycobacterium tuberculosis probable sugar transport protein Rv1237 TR:O50453 (EMBL:AL021006) (274 aa)%3B Fasta score E(): 0%2C 89.4%25 identity in 274 aa overlap and Thermococcus litoralis inner membrane protein MalG TR:O51925 (EMBL:AF012836) (278 aa)%3B Fasta score E(): 4.1e-31%2C 35.9%25 identity in 270 aa overlap. Contains multiple possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component.;gbkey=CDS;gene=ML1088;product=probable ABC-transport protein%2C inner membrane component;protein_id=CAC31469.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1251168	1251398	.	+	.	ID=id-ML1088;Note=Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component%2C score 59.10%2C E-value 9.8e-14;gbkey=misc_feature;gene=ML1088
AL450380.1	EMBL	gene	1251532	1252710	.	+	.	ID=gene-ML1089;Name=ML1089;gbkey=Gene;gene=ML1089;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1251532	1252710	.	+	0	ID=cds-CAC31470.1;Parent=gene-ML1089;Dbxref=GOA:Q7AQ92,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR008995,InterPro:IPR012340,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7AQ92,NCBI_GP:CAC31470.1;Name=CAC31470.1;Note=Identical to the previously sequenced Mycobacterium leprae TR:Q49978 (EMBL:U15180) (392 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 392 aa overlap. Also highly similar to many ABC-transport proteins including: Mycobacterium tuberculosis Rv1238 TR:O50454 (EMBL:AL021006) (393 aa)%3B Fasta score E(): 0%2C 79.9%25 identity in 389 aa overlap and Agrobacterium radiobacter SW:LACK_AGRRD (Q01937) (363 aa)%3B Fasta score E(): 0%2C 53.1%25 identity in 339 aa overlap lactose transport ATP-binding protein. Contains Pfam match to entry PF00005 ABC_tran%2C ABC transporter. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00211 ABC transporters family signature.%3B~Similar to ML1424;gbkey=CDS;gene=ML1089;product=probable ABC-transport protein%2C ATP-binding component;protein_id=CAC31470.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1251619	1252164	.	+	.	ID=id-ML1089;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 200.60%2C E-value 2.5e-56;gbkey=misc_feature;gene=ML1089
AL450380.1	EMBL	sequence_feature	1251640	1251663	.	+	.	ID=id-ML1089-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1089
AL450380.1	EMBL	sequence_feature	1251934	1251978	.	+	.	ID=id-ML1089-3;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=ML1089
AL450380.1	EMBL	gene	1253339	1254448	.	-	.	ID=gene-ML1090;Name=ML1090;gbkey=Gene;gene=ML1090;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1253339	1254448	.	-	0	ID=cds-CAC31471.1;Parent=gene-ML1090;Dbxref=GOA:Q9CCA0,InterPro:IPR002523,InterPro:IPR004488,UniProtKB/TrEMBL:Q9CCA0,NCBI_GP:CAC31471.1;Name=CAC31471.1;Note=Previously sequenced Mycobacterium leprae TR:Q49979 (EMBL:U15180) (373 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 369 aa overlap. Highly similar to Mycobacterium tuberculosis putative magnesium and cobalt transport protein%2C CorA (Rv1239c) TR:O50455 (EMBL:AL021006) (366 aa)%3B Fasta score E(): 0%2C 79.4%25 identity in 369 aa overlap. Also weakly similar to Haemophilus influenzae SW:CORA_HAEIN (P44998) (315 aa)%3B Fasta score E(): 2.8e-07%2C 24.1%25 identity in 323 aa overlap%2C CorA transporter. Contains possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF01544 CorA%2C CorA-like Mg2+ transporter protein.;gbkey=CDS;gene=ML1090;product=probable membrane transport protein;protein_id=CAC31471.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1253342	1254247	.	-	.	ID=id-ML1090;Note=Pfam match to entry PF01544 CorA%2C CorA-like Mg2+ transporter protein%2C score 487.20%2C E-value 1.3e-142;gbkey=misc_feature;gene=ML1090
AL450380.1	EMBL	ribosome_entry_site	1254658	1254662	.	+	.	ID=id-AL450380.1:1254658..1254662;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1254671	1255660	.	+	.	ID=gene-mdh;Name=mdh;gbkey=Gene;gene=mdh;gene_biotype=protein_coding;gene_synonym=ML1091
AL450380.1	EMBL	CDS	1254671	1255660	.	+	0	ID=cds-CAC31472.1;Parent=gene-mdh;Dbxref=GOA:P50917,InterPro:IPR001236,InterPro:IPR001252,InterPro:IPR001557,InterPro:IPR010945,InterPro:IPR015955,InterPro:IPR016040,InterPro:IPR022383,NCBI_GP:CAC31472.1;Name=CAC31472.1;Note=Identical to the previously sequenced Mycobacterium leprae malate dehydrogenase (EC 1.1.1.37) SW:MDH_MYCLE (P50917) (329 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 329 aa overlap. Also highly similar to many other malate dehydrogenases including: Mycobacterium tuberculosis Rv1240 SW:MDH_MYCTU (O54592) (329 aa)%3B Fasta score E(): 0%2C 89.1%25 identity in 329 aa overlap and Thermus aquaticus SW:MDH_THEFL (P10584) (327 aa)%3B Fasta score E(): 0%2C 63.7%25 identity in 325 aa overlap. Contains Pfam match to entry PF00056 ldh%2C lactate/malate dehydrogenase. Contains PS00687 Aldehyde dehydrogenases glutamic acid active site. Contains PS00068 Malate dehydrogenase active site signature.;gbkey=CDS;gene=mdh;product=malate dehydrogenase;protein_id=CAC31472.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1254689	1255642	.	+	.	ID=id-mdh;Note=Pfam match to entry PF00056 ldh%2C lactate/malate dehydrogenase%2C score 299.00%2C E-value 5.6e-86;gbkey=misc_feature;gene=mdh
AL450380.1	EMBL	sequence_feature	1255136	1255174	.	+	.	ID=id-mdh-2;Note=PS00068 Malate dehydrogenase active site signature;gbkey=misc_feature;gene=mdh
AL450380.1	EMBL	sequence_feature	1255265	1255288	.	+	.	ID=id-mdh-3;Note=PS00687 Aldehyde dehydrogenases glutamic acid active site;gbkey=misc_feature;gene=mdh
AL450380.1	EMBL	pseudogene	1255675	1256444	.	-	.	ID=gene-ML1092;Name=ML1092;gbkey=Gene;gene=ML1092;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1255675	1256444	.	-	0	ID=cds-ML1092;Parent=gene-ML1092;Note=Possible pseudogene of M. tuberculosis orthologue PE_PGRS (Best blastx score 184);gbkey=CDS;gene=ML1092;product=PE_PGRS-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1257729	1258586	.	+	.	ID=gene-ML1093;Name=ML1093;gbkey=Gene;gene=ML1093;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1257729	1258586	.	+	0	ID=cds-CAC31474.1;Parent=gene-ML1093;Dbxref=GOA:Q9CC99,InterPro:IPR007210,UniProtKB/TrEMBL:Q9CC99,NCBI_GP:CAC31474.1;Name=CAC31474.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49982 (EMBL:U15180) (227 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 227 aa overlap. Also highly similar to Mycobacterium tuberculosis lipoprotein Rv1244%2C TR:O50459 (EMBL:AL021006) (286 aa)%3B Fasta score E(): 0%2C 73.5%25 identity in 287 aa overlap and weakly similar to several others e.g. Streptomyces coelicolor TR:Q9X832 (EMBL:AL049727) (320 aa)%3B Fasta score E(): 2.9%2C 26.1%25 identity in 299 aa overlap putative secreted substrate-binding protein. Contains a possible N-terminal signal sequence and an appropriately positioned Prokaryotic membrane lipoprotein lipid attachment site. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=ML1093;product=lipoprotein;protein_id=CAC31474.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1257762	1257794	.	+	.	ID=id-ML1093;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=ML1093
AL450380.1	EMBL	gene	1259132	1259965	.	-	.	ID=gene-ML1094;Name=ML1094;gbkey=Gene;gene=ML1094;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1259132	1259965	.	-	0	ID=cds-CAC31475.1;Parent=gene-ML1094;Dbxref=GOA:Q9CC98,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:Q9CC98,NCBI_GP:CAC31475.1;Name=CAC31475.1;Note=Highly similar to several Mycobacterium tuberculosis putative oxidoreductases e.g. Rv1245c TR:O50460 (EMBL:AL021006) (276 aa)%3B Fasta score E(): 0%2C 78.3%25 identity in 277 aa overlap. Also similar to many others including: Pseudomonas paucimobilis SW:LINX_PSEPA (P50198) (250 aa)%3B Fasta score E(): 9.3e-17%2C 35.6%25 identity in 194 aa overlap 2%2C5-dichloro-2%2C5-cyclohexadiene-1%2C4-diol dehydrogenase. Contains Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase. Contains PS00061 Short-chain dehydrogenases/reductases family signature.;gbkey=CDS;gene=ML1094;product=short chain alcohol dehydrogenase;protein_id=CAC31475.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1259387	1259947	.	-	.	ID=id-ML1094;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 203.70%2C E-value 2.7e-57;gbkey=misc_feature;gene=ML1094
AL450380.1	EMBL	sequence_feature	1259456	1259542	.	-	.	ID=id-ML1094-2;Note=PS00061 Short-chain dehydrogenases/reductases family signature;gbkey=misc_feature;gene=ML1094
AL450380.1	EMBL	ribosome_entry_site	1259972	1259975	.	-	.	ID=id-AL450380.1:1259972..1259975;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1260028	1263810	.	-	.	ID=gene-odhA;Name=odhA;gbkey=Gene;gene=odhA;gene_biotype=protein_coding;gene_synonym=ML1095
AL450380.1	EMBL	CDS	1260028	1263810	.	-	0	ID=cds-CAC31476.1;Parent=gene-odhA;Dbxref=GOA:Q9CC97,InterPro:IPR001017,InterPro:IPR001078,InterPro:IPR005475,InterPro:IPR011603,InterPro:IPR023213,InterPro:IPR029061,NCBI_GP:CAC31476.1;Name=CAC31476.1;Note=This CDS appears to constitute the E1 and E2 components of the 2-oxoglutarate dehydrogenase complex. The N-terminus of this protein is similar to the dihydrolipoamide succinyltransferase component E2 and the C-terminus is similar to 2-oxoglutarate dehydrogenase components E1 e.g. Escherichia coli SW:ODO2_ECOLI (J01619) (179 aa)%3B BlastP Expect 3.9 and Escherichia coli SW:ODO1_ECOLI (J01619) (179 aa)%3B BlastP Expect 3.9%2C respectively. The predicted product of this CDS is also similar%2C in its entirety%2C to Corynebacterium glutamicum 2-oxoglutarate dehydrogenase (EC 1.2.4.2) TR:P96746 (EMBL:D84102) (1257 aa)%3B Fasta score E(): 0%2C 58.9%25 identity in 1253 aa overlap and Mycobacterium tuberculosis 2-oxoglutarate dehydrogenase Rv1248c TR:O50463 (EMBL:AL021006) (1214 aa)%3B Fasta score E(): 0%2C 89.0%25 identity in 1224 aa overlap. Contains Pfam match to entry PF00198 2-oxoacid_dh%2C 2-oxo acid dehydrogenases acyltransferase (catalytic domain). Contains Pfam match to entry PF00676 E1_dehydrog%2C Dehydrogenase E1 component.;gbkey=CDS;gene=odhA;product=2-oxoglutarate dehydrogenase%2C E1 and E2 components;protein_id=CAC31476.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1261261	1262262	.	-	.	ID=id-odhA;Note=Pfam match to entry PF00676 E1_dehydrog%2C Dehydrogenase E1 component%2C score 169.00%2C E-value 8.1e-47;gbkey=misc_feature;gene=odhA
AL450380.1	EMBL	sequence_feature	1262704	1263387	.	-	.	ID=id-odhA-2;Note=Pfam match to entry PF00198 2-oxoacid_dh%2C 2-oxo acid dehydrogenases acyltransferase (catalytic domain)%2C score 10.60%2C E-value 6.2e-10;gbkey=misc_feature;gene=odhA
AL450380.1	EMBL	gene	1263932	1264606	.	-	.	ID=gene-ML1096;Name=ML1096;gbkey=Gene;gene=ML1096;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1263932	1264606	.	-	0	ID=cds-CAC31477.1;Parent=gene-ML1096;Dbxref=UniProtKB/TrEMBL:Q9CC96,NCBI_GP:CAC31477.1;Name=CAC31477.1;Note=Highly similar to Mycobacterium tuberculosis Rv1249c TR:O50464 (EMBL:AL021006) (262 aa)%3B Fasta score E(): 0%2C 67.3%25 identity in 223 aa overlap. Contains multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1096;product=putative membrane protein;protein_id=CAC31477.1;transl_table=11
AL450380.1	EMBL	pseudogene	1265104	1266377	.	+	.	ID=gene-ML1097;Name=ML1097;gbkey=Gene;gene=ML1097;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1265104	1266377	.	+	0	ID=cds-ML1097;Parent=gene-ML1097;Note=Possible pseudogene of M. tuberculosis orthologue Rv1250 (Best blastx score 225);gbkey=CDS;gene=ML1097;product=probable drug efflux protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1266648	1270106	.	-	.	ID=gene-ML1098;Name=ML1098;gbkey=Gene;gene=ML1098;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1266648	1270106	.	-	0	ID=cds-CAC31479.1;Parent=gene-ML1098;Dbxref=InterPro:IPR003593,InterPro:IPR019993,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CC95,NCBI_GP:CAC31479.1;Name=CAC31479.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein Rv1251c TR:O50466 (EMBL:AL021006) (1139 aa)%3B Fasta score E(): 0%2C 75.5%25 identity in 1141 aa overlap. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML1098;product=conserved hypothetical protein;protein_id=CAC31479.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1267776	1267799	.	-	.	ID=id-ML1098;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1098
AL450380.1	EMBL	gene	1270157	1270765	.	-	.	ID=gene-ML1099;Name=ML1099;gbkey=Gene;gene=ML1099;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1270157	1270765	.	-	0	ID=cds-CAC31480.1;Parent=gene-ML1099;Dbxref=GOA:Q9CC94,InterPro:IPR025971,NCBI_GP:CAC31480.1;Name=CAC31480.1;Note=Highly similar to Mycobacterium tuberculosis putative lipoprotein SW:LPRE_MYCTU (Q11065) (202 aa)%3B Fasta score E(): 0%2C 71.3%25 identity in 202 aa overlap. Contains a possible N-terminal signal sequence and an appropriately positioned Prokaryotic membrane lipoprotein lipid attachment site. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=ML1099;product=putative lipoprotein;protein_id=CAC31480.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1270679	1270711	.	-	.	ID=id-ML1099;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=ML1099
AL450380.1	EMBL	ribosome_entry_site	1270769	1270775	.	-	.	ID=id-AL450380.1:1270769..1270775;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	1271263	1272632	.	+	.	ID=gene-ML1100;Name=ML1100;gbkey=Gene;gene=ML1100;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1271263	1272632	.	+	0	ID=cds-ML1100;Parent=gene-ML1100;Note=Possible pseudogene of M. tuberculosis orthologue deaD (Best blastx score 769);gbkey=CDS;gene=ML1100;product=possible ATP-dependent DNA/RNA helicase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1272632	1273771	.	+	.	ID=gene-ML1101;Name=ML1101;gbkey=Gene;gene=ML1101;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1272632	1273771	.	+	0	ID=cds-CAC31482.1;Parent=gene-ML1101;Dbxref=GOA:Q9CC93,InterPro:IPR002656,UniProtKB/TrEMBL:Q9CC93,NCBI_GP:CAC31482.1;Name=CAC31482.1;Note=Similar to several acyltransferases including: Streptomyces thermotolerans macrolide antibiotics 3-O-acyltransferase TR:Q56074 (EMBLD30759:) (389 aa)%3B Fasta score E(): 1.3e-14%2C 29.4%25 identity in 377 aa overlap and Mycobacterium tuberculosis probable acyltransferase Rv1254 TR:Q11064 (EMBL:Z77137) (383 aa)%3B Fasta score E(): 0%2C 79.6%25 identity in 378 aa overlap. Contains multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1101;product=possible acyltransferase;protein_id=CAC31482.1;transl_table=11
AL450380.1	EMBL	pseudogene	1275354	1276450	.	-	.	ID=gene-ML1102;Name=ML1102;gbkey=Gene;gene=ML1102;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1275354	1276450	.	-	0	ID=cds-ML1102;Parent=gene-ML1102;Note=Possible pseudogene of M. tuberculosis orthologue probable cytochrome P-450 Rv1256c (Best blastx score 356);gbkey=CDS;gene=ML1102;product=possible cytochrome P-450 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1276458	1277819	.	-	.	ID=gene-ML1103;Name=ML1103;gbkey=Gene;gene=ML1103;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1276458	1277819	.	-	0	ID=cds-CAC31484.1;Parent=gene-ML1103;Dbxref=GOA:Q9CC92,InterPro:IPR004113,InterPro:IPR006094,InterPro:IPR016164,InterPro:IPR016166,InterPro:IPR016167,InterPro:IPR016169,InterPro:IPR016171,UniProtKB/TrEMBL:Q9CC92,NCBI_GP:CAC31484.1;Name=CAC31484.1;Note=Similar to many putative oxidoreductase subunits including: Escherichia coli glycolate oxidase subunit GlcD SW:GLCD_ECOLI (P52075) (499 aa)%3B Fasta score E(): 0%2C 38.8%25 identity in 456 aa overlap and Mycobacterium tuberculosis probable oxidoreductase Rv1257c TR:Q11061 (EMBL:Z77137) (455 aa)%3B Fasta score E(): 0%2C 85.8%25 identity in 451 aa overlap. Contains Pfam match to entry PF01565 FAD_binding_4%2C FAD binding domain.;gbkey=CDS;gene=ML1103;product=possible oxidoreductase subunit;protein_id=CAC31484.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1277205	1277807	.	-	.	ID=id-ML1103;Note=Pfam match to entry PF01565 FAD_binding_4%2C FAD binding domain%2C score 321.80%2C E-value 8.1e-93;gbkey=misc_feature;gene=ML1103
AL450380.1	EMBL	pseudogene	1277824	1278919	.	-	.	ID=gene-ML1104;Name=ML1104;gbkey=Gene;gene=ML1104;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1277824	1278919	.	-	0	ID=cds-ML1104;Parent=gene-ML1104;Note=Possible pseudogene of M. tuberculosis orthologue Rv1258c (Best blastx score 234);gbkey=CDS;gene=ML1104;product=probable multidrug resistance pump (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1279262	1279951	.	+	.	ID=gene-ML1105;Name=ML1105;gbkey=Gene;gene=ML1105;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1279262	1279951	.	+	0	ID=cds-CAC31486.1;Parent=gene-ML1105;Dbxref=InterPro:IPR005122,NCBI_GP:CAC31486.1;Name=CAC31486.1;Note=Similar to many proteins of undefined function including: Mycobacterium tuberculosis Rv1259 SW:YC59_MYCTU (Q11059) (299 aa)%3B Fasta score E(): 0%2C 85.5%25 identity in 228 aa overlap and Streptomyces coelicolor TR:Q9S2L3 (EMBL:AL109732) (237 aa)%3B Fasta score E(): 0%2C 54.5%25 identity in 231 aa overlap.;gbkey=CDS;gene=ML1105;product=conserved hypothetical protein.;protein_id=CAC31486.1;transl_table=11
AL450380.1	EMBL	stem_loop	1280327	1280369	.	+	.	ID=id-AL450380.1:1280327..1280369;Note=possible stem loop structure with 100%25 matches over 21 bases and a 1 nt loop.;gbkey=stem_loop
AL450380.1	EMBL	gene	1280426	1280767	.	+	.	ID=gene-ML1106;Name=ML1106;gbkey=Gene;gene=ML1106;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1280426	1280767	.	+	0	ID=cds-CAC31487.1;Parent=gene-ML1106;Dbxref=GOA:Q9CC90,InterPro:IPR011251,UniProtKB/TrEMBL:Q9CC90,NCBI_GP:CAC31487.1;Name=CAC31487.1;Note=unknown function.;gbkey=CDS;gene=ML1106;product=hypothetical protein;protein_id=CAC31487.1;transl_table=11
AL450380.1	EMBL	pseudogene	1280738	1281174	.	-	.	ID=gene-ML1107;Name=ML1107;gbkey=Gene;gene=ML1107;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1280738	1281174	.	-	0	ID=cds-ML1107;Parent=gene-ML1107;Note=Possible pseudogene of M. tuberculosis orthologue Rv1262c (Best blastx score 270);gbkey=CDS;gene=ML1107;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1281251	1282166	.	-	.	ID=gene-ML1108;Name=ML1108;gbkey=Gene;gene=ML1108;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1281251	1282166	.	-	0	ID=cds-ML1108;Parent=gene-ML1108;Note=Possible pseudogene of M. tuberculosis orthologue Rv0075 (Best blastx score 290);gbkey=CDS;gene=ML1108;product=probable aminotransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1282281	1283491	.	+	.	ID=gene-ML1109;Name=ML1109;gbkey=Gene;gene=ML1109;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1282281	1283491	.	+	0	ID=cds-ML1109;Parent=gene-ML1109;Note=Possible pseudogene of M. tuberculosis orthologue amiB2 (Best blastx score 454);gbkey=CDS;gene=ML1109;product=putative amidase AMI2_MYCTU Q11056 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1284313	1285503	.	+	.	ID=gene-ML1110;Name=ML1110;gbkey=Gene;gene=ML1110;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1284313	1285503	.	+	0	ID=cds-ML1110;Parent=gene-ML1110;Note=Possible pseudogene of M. tuberculosis orthologue Rv0074 (Best blastx score 257);gbkey=CDS;gene=ML1110;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1285578	1286609	.	+	.	ID=gene-ML1111;Name=ML1111;gbkey=Gene;gene=ML1111;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1285578	1286609	.	+	0	ID=cds-ML1111;Parent=gene-ML1111;Note=Possible pseudogene of M. tuberculosis orthologue Rv1264 (Best blastx score 409);gbkey=CDS;gene=ML1111;product=similar to adenylate cyclases (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1287170	1287430	.	+	.	ID=gene-ML1112;Name=ML1112;gbkey=Gene;gene=ML1112;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1287170	1287430	.	+	0	ID=cds-ML1112;Parent=gene-ML1112;Note=Possible pseudogene of M. tuberculosis orthologue Rv1265 (Best blastx score 242);gbkey=CDS;gene=ML1112;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1287737	1289626	.	-	.	ID=gene-ML1113;Name=ML1113;gbkey=Gene;gene=ML1113;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1287737	1289626	.	-	0	ID=cds-CAC31494.1;Parent=gene-ML1113;Dbxref=GOA:Q9CC89,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011527,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CC89,NCBI_GP:CAC31494.1;Name=CAC31494.1;Note=Highly similar to many proposed ABC transporter proteins including: Mycobacterium tuberculosis Rv1272c SW:YC72_MYCTU (Q11047) (631 aa)%3B Fasta score E(): 0%2C 75.4%25 identity in 623 aa overlap and Bacillus subtilis hypothetical ABC transporter ATP-binding protein SW:YFIC_BACSU (P54719) (604 aa)%3B Fasta score E(): 0%2C 43.2%25 identity in 532 aa overlap. Contains possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF00664 ABC_membrane%2C ABC transporter transmembrane region. Contains Pfam match to entry PF00005 ABC_tran%2C ABC transporter. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00211 ABC transporters family signature.%3B~Similar to the adjoining CDS Rv1244;gbkey=CDS;gene=ML1113;product=probable ABC transporter%2C ATP-binding component;protein_id=CAC31494.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1287812	1288366	.	-	.	ID=id-ML1113;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 195.20%2C E-value 1e-54;gbkey=misc_feature;gene=ML1113
AL450380.1	EMBL	sequence_feature	1287989	1288033	.	-	.	ID=id-ML1113-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=ML1113
AL450380.1	EMBL	sequence_feature	1288322	1288345	.	-	.	ID=id-ML1113-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1113
AL450380.1	EMBL	sequence_feature	1288595	1289533	.	-	.	ID=id-ML1113-4;Note=Pfam match to entry PF00664 ABC_membrane%2C ABC transporter transmembrane region.%2C score 192.50%2C E-value 6.6e-54;gbkey=misc_feature;gene=ML1113
AL450380.1	EMBL	gene	1289623	1291377	.	-	.	ID=gene-ML1114;Name=ML1114;gbkey=Gene;gene=ML1114;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1289623	1291377	.	-	0	ID=cds-CAC31495.1;Parent=gene-ML1114;Dbxref=GOA:Q9CC88,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011527,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CC88,NCBI_GP:CAC31495.1;Name=CAC31495.1;Note=Highly similar to many proposed ABC transporter proteins including: Mycobacterium tuberculosis Rv1273c SW:YC73_MYCTU (Q11046) (582 aa)%3B Fasta score E(): 0%2C 78.4%25 identity in 583 aa overlap and Bacillus subtilis hypothetical ABC transporter ATP-binding protein SW:YFIB_BACSU (P54718) (573 aa)%3B Fasta score E(): 0%2C 34.4%25 identity in 569 aa overlap. Contains possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF00664 ABC_membrane%2C ABC transporter transmembrane region.. Contains Pfam match to entry PF00005 ABC_tran%2C ABC transporter. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00211 ABC transporters family signature.%3B~Similar to the adjoining CDS Rv1243;gbkey=CDS;gene=ML1114;product=probable ABC transporter protein%2C ATP-binding component;protein_id=CAC31495.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1289731	1290294	.	-	.	ID=id-ML1114;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 174.40%2C E-value 1.8e-48;gbkey=misc_feature;gene=ML1114
AL450380.1	EMBL	sequence_feature	1289908	1289952	.	-	.	ID=id-ML1114-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=ML1114
AL450380.1	EMBL	sequence_feature	1290250	1290273	.	-	.	ID=id-ML1114-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1114
AL450380.1	EMBL	sequence_feature	1290514	1291329	.	-	.	ID=id-ML1114-4;Note=Pfam match to entry PF00664 ABC_membrane%2C ABC transporter transmembrane region.%2C score 174.40%2C E-value 1.9e-48;gbkey=misc_feature;gene=ML1114
AL450380.1	EMBL	ribosome_entry_site	1291550	1291553	.	+	.	ID=id-AL450380.1:1291550..1291553;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1291563	1292129	.	+	.	ID=gene-ML1115;Name=ML1115;gbkey=Gene;gene=ML1115;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1291563	1292129	.	+	0	ID=cds-CAC31496.1;Parent=gene-ML1115;Dbxref=GOA:Q9CC87,InterPro:IPR024520,NCBI_GP:CAC31496.1;Name=CAC31496.1;Note=Highly similar to Mycobacterium tuberculosis possible lipoprotein Rv1274 SW:LPRB_MYCTU (Q11045) (185 aa)%3B Fasta score E(): 0%2C 78.2%25 identity in 188 aa overlap. Contains a possible N-terminal signal sequence and an appropriately positioned Prokaryotic membrane lipoprotein lipid attachment site. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=ML1115;product=possible lipoprotein;protein_id=CAC31496.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1291614	1291646	.	+	.	ID=id-ML1115;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=ML1115
AL450380.1	EMBL	ribosome_entry_site	1292131	1292134	.	+	.	ID=id-AL450380.1:1292131..1292134;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1292138	1292701	.	+	.	ID=gene-ML1116;Name=ML1116;gbkey=Gene;gene=ML1116;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1292138	1292701	.	+	0	ID=cds-CAC31497.1;Parent=gene-ML1116;Dbxref=InterPro:IPR024520,UniProtKB/TrEMBL:Q9CC86,NCBI_GP:CAC31497.1;Name=CAC31497.1;Note=Highly similar to Mycobacterium tuberculosis putative lipoprotein LrpC Rv1275 TR:O86337 (EMBL:Z77137) (180 aa)%3B Fasta score E(): 0%2C 82.7%25 identity in 179 aa overlap. Contains a possible N-terminal signal sequence and an appropriately positioned Prokaryotic membrane lipoprotein lipid attachment site. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=ML1116;product=lipoprotein;protein_id=CAC31497.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1292189	1292221	.	+	.	ID=id-ML1116;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=ML1116
AL450380.1	EMBL	gene	1292709	1293194	.	-	.	ID=gene-ML1117;Name=ML1117;gbkey=Gene;gene=ML1117;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1292709	1293194	.	-	0	ID=cds-CAC31498.1;Parent=gene-ML1117;Dbxref=GOA:Q9CC85,InterPro:IPR013078,InterPro:IPR029033,NCBI_GP:CAC31498.1;Name=CAC31498.1;Note=Highly similar to Mycobacterium tuberculosis Rv1276c SW:YC76_MYCTU (Q11043) (158 aa)%3B Fasta score E(): 0%2C 65.4%25 identity in 162 aa overlap.;gbkey=CDS;gene=ML1117;product=conserved hypothetical protein;protein_id=CAC31498.1;transl_table=11
AL450380.1	EMBL	repeat_region	1293273	1294025	.	-	.	ID=id-AL450380.1:1293273..1294025;Note=753 bp repeat%2C 100%25 identical to region 2655600..2656352;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	1293281	1294512	.	-	.	ID=gene-ML1118;Name=ML1118;gbkey=Gene;gene=ML1118;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1293281	1294512	.	-	0	ID=cds-ML1118;Parent=gene-ML1118;Note=Possible pseudogene of M. tuberculosis orthologue Rv1128c (Best blastx score 268);gbkey=CDS;gene=ML1118;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1294754	1294757	.	+	.	ID=id-AL450380.1:1294754..1294757;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1294763	1295914	.	+	.	ID=gene-ML1119;Name=ML1119;gbkey=Gene;gene=ML1119;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1294763	1295914	.	+	0	ID=cds-CAC31500.1;Parent=gene-ML1119;Dbxref=GOA:Q9CC84,InterPro:IPR004843,InterPro:IPR014577,InterPro:IPR029052,UniProtKB/TrEMBL:Q9CC84,NCBI_GP:CAC31500.1;Name=CAC31500.1;Note=Highly similar%2C in parts%2Cto Mycobacterium tuberculosis hypothetical protein Rv1277 TR:Q50699 (EMBL:Z77137) (417 aa)%3B Fasta score E(): 0%2C 82.0%25 identity in 383 aa overlap.;gbkey=CDS;gene=ML1119;product=hypothetical protein;protein_id=CAC31500.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1295903	1295906	.	+	.	ID=id-ML1119;Parent=gene-ML1119;gbkey=regulatory;gene=ML1119;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1295911	1298532	.	+	.	ID=gene-ML1120;Name=ML1120;gbkey=Gene;gene=ML1120;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1295911	1298532	.	+	0	ID=cds-CAC31501.1;Parent=gene-ML1120;Dbxref=InterPro:IPR027417,UniProtKB/TrEMBL:Q9CC83,NCBI_GP:CAC31501.1;Name=CAC31501.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein Rv1278 SW:YC78_MYCTU (Q11042) (875 aa)%3B Fasta score E(): 0%2C 69.5%25 identity in 872 aa overlap. Contains multiple possible coiled-coils. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML1120;product=conserved hypothetical protein;protein_id=CAC31501.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1296001	1296024	.	+	.	ID=id-ML1120;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1120
AL450380.1	EMBL	gene	1299720	1301393	.	-	.	ID=gene-ML1121;Name=ML1121;gbkey=Gene;gene=ML1121;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1299720	1301393	.	-	0	ID=cds-CAC31502.1;Parent=gene-ML1121;Dbxref=GOA:Q9CC82,InterPro:IPR000914,UniProtKB/TrEMBL:Q9CC82,NCBI_GP:CAC31502.1;Name=CAC31502.1;Note=Similar to several including: Mycobacterium tuberculosis extracellular solute-binding Rv1280c SW:YC80_MYCTU (Q11041) (591 aa)%3B Fasta score E(): 0%2C 80.3%25 identity in 548 aa overlap and Escherichia coli putative binding protein YddS precursor SW:YDDS_ECOLI (P76128) (516 aa)%3B Fasta score E(): 2.3e-10%2C 22.5%25 identity in 480 aa overlap. Contains a possible N-terminal signal sequence and an appropriately positioned Prokaryotic membrane lipoprotein lipid attachment site. Contains Pfam match to entry PF00496 SBP_bac_5%2C Bacterial extracellular solute-binding proteins%2C family 5. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=ML1121;product=probable extracellular solute-binding dependent transport lipoprotein.;protein_id=CAC31502.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1299732	1300688	.	-	.	ID=id-ML1121;Note=Pfam match to entry PF00496 SBP_bac_5%2C Bacterial extracellular solute-binding proteins%2C family 5%2C score 61.50%2C E-value 2.3e-16;gbkey=misc_feature;gene=ML1121
AL450380.1	EMBL	sequence_feature	1301331	1301363	.	-	.	ID=id-ML1121-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=ML1121
AL450380.1	EMBL	gene	1301390	1303219	.	-	.	ID=gene-ML1122;Name=ML1122;gbkey=Gene;gene=ML1122;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1301390	1303219	.	-	0	ID=cds-CAC31503.1;Parent=gene-ML1122;Dbxref=GOA:Q9CC81,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR010066,InterPro:IPR013563,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CC81,NCBI_GP:CAC31503.1;Name=CAC31503.1;Note=Highly similar to many putative ABC transport proteins e.g. Escherichia coli SW:YLIA_ECOLI (P75796) (269 aa)%3B BlastP Expect 4.0e-28 Mycobacterium tuberculosis Rv1281c SW:YC81_MYCTU (Q11040 (269 aa)%3B BlastP Expect 4.0e-28. Note%2C that the N- and C-termini of this CDS are possible duplicates. Contains 2 Pfam matches to entry PF00005 ABC_tran%2C ABC transporter. Contains 2 x PS00017 ATP/GTP-binding site motif A (P-loop). Contains 2 x PS00211 ABC transporters family signature.;gbkey=CDS;gene=ML1122;product=Probable ABC transport protein%2C ATP-binding component;protein_id=CAC31503.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1301492	1302061	.	-	.	ID=id-ML1122;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 212.90%2C E-value 5e-60;gbkey=misc_feature;gene=ML1122
AL450380.1	EMBL	sequence_feature	1301678	1301722	.	-	.	ID=id-ML1122-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=ML1122
AL450380.1	EMBL	sequence_feature	1302017	1302040	.	-	.	ID=id-ML1122-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1122
AL450380.1	EMBL	sequence_feature	1302527	1303120	.	-	.	ID=id-ML1122-4;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 185.80%2C E-value 6.9e-52;gbkey=misc_feature;gene=ML1122
AL450380.1	EMBL	sequence_feature	1302713	1302757	.	-	.	ID=id-ML1122-5;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=ML1122
AL450380.1	EMBL	sequence_feature	1303076	1303099	.	-	.	ID=id-ML1122-6;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1122
AL450380.1	EMBL	ribosome_entry_site	1301397	1301401	.	-	.	ID=id-ML1122-7;Parent=gene-ML1122;gbkey=regulatory;gene=ML1122;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1303216	1304115	.	-	.	ID=gene-ML1123;Name=ML1123;gbkey=Gene;gene=ML1123;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1303216	1304115	.	-	0	ID=cds-CAC31504.1;Parent=gene-ML1123;Dbxref=GOA:Q9CC80,InterPro:IPR000515,InterPro:IPR025966,UniProtKB/TrEMBL:Q9CC80,NCBI_GP:CAC31504.1;Name=CAC31504.1;Note=Highly similar to many membrane transport proteins e.g. Mycobacterium tuberculosis putative peptide transport permease Rv1282c SW:YC82_MYCTU (Q10623) (291 aa)%3B Fasta score E(): 0%2C 82.6%25 identity in 287 aa overlap and Escherichia coli SW:OPPC_ECOLI (P77664) (302 aa)%3B Fasta score E(): 0%2C 38.8%25 identity in 289 aa overlap oligopeptide transport system permease protein. Contains multiple possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component. Contains PS00402 Binding-protein-dependent transport systems inner membrane comp sign..;gbkey=CDS;gene=ML1123;product=probable binding-protein dependent transport protein;protein_id=CAC31504.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1303348	1303578	.	-	.	ID=id-ML1123;Note=Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component%2C score 29.30%2C E-value 9.1e-05;gbkey=misc_feature;gene=ML1123
AL450380.1	EMBL	sequence_feature	1303489	1303575	.	-	.	ID=id-ML1123-2;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp sign.;gbkey=misc_feature;gene=ML1123
AL450380.1	EMBL	gene	1304112	1305089	.	-	.	ID=gene-ML1124;Name=ML1124;gbkey=Gene;gene=ML1124;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1304112	1305089	.	-	0	ID=cds-CAC31505.1;Parent=gene-ML1124;Dbxref=GOA:Q9CC79,InterPro:IPR000515,UniProtKB/TrEMBL:Q9CC79,NCBI_GP:CAC31505.1;Name=CAC31505.1;Note=Highly similar to many membrane transport proteins e.g. Mycobacterium tuberculosis putative peptide transport permease protein Rv1283c SW:YC83_MYCTU (Q10611) (325 aa)%3B Fasta score E(): 0%2C 83.4%25 identity in 325 aa overlap and Bacillus subtilis oligopeptide transport system permease SW:APPB_BACSU (P42062) (317 aa)%3B Fasta score E(): 4.5e-27%2C 34.1%25 identity in 328 aa overlap. Contains possible membrane spanning hydrophobic domains and a possible N-terminal signal sequence. Contains Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component. Contains PS00402 Binding-protein-dependent transport systems inner membrane comp sign..;gbkey=CDS;gene=ML1124;product=probable binding-protein dependent transport protein;protein_id=CAC31505.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1304232	1304447	.	-	.	ID=id-ML1124;Note=Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component%2C score 28.60%2C E-value 0.00014;gbkey=misc_feature;gene=ML1124
AL450380.1	EMBL	sequence_feature	1304358	1304444	.	-	.	ID=id-ML1124-2;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp sign.;gbkey=misc_feature;gene=ML1124
AL450380.1	EMBL	pseudogene	1305487	1305648	.	+	.	ID=gene-ML1125;Name=ML1125;gbkey=Gene;gene=ML1125;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1305487	1305648	.	+	0	ID=cds-ML1125;Parent=gene-ML1125;Note=Possible pseudogene of M. tuberculosis orthologue Rv1284 (Best blastx score 190);gbkey=CDS;gene=ML1125;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1309374	1309917	.	-	.	ID=gene-ML1126;Name=ML1126;gbkey=Gene;gene=ML1126;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1309374	1309917	.	-	0	ID=cds-ML1126;Parent=gene-ML1126;Note=Possible pseudogene of M. tuberculosis orthologue lpqQ (Best blastx score 222);gbkey=CDS;gene=ML1126;product=lipoprotein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1316300	1316375	.	-	.	ID=gene-argV;Name=argV;gbkey=Gene;gene=argV;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	1316300	1316375	.	-	.	ID=rna-argV;Parent=gene-argV;Note=tRNA Arg anticodon CCG%2C Cove score 91.71;gbkey=tRNA;gene=argV;product=tRNA-Arg
AL450380.1	EMBL	exon	1316300	1316375	.	-	.	ID=exon-argV-1;Parent=rna-argV;Note=tRNA Arg anticodon CCG%2C Cove score 91.71;gbkey=tRNA;gene=argV;product=tRNA-Arg
AL450380.1	EMBL	ribosome_entry_site	1316558	1316561	.	+	.	ID=id-AL450380.1:1316558..1316561;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1316571	1318223	.	+	.	ID=gene-argS;Name=argS;gbkey=Gene;gene=argS;gene_biotype=protein_coding;gene_synonym=ML1127
AL450380.1	EMBL	CDS	1316571	1318223	.	+	0	ID=cds-CAC31508.1;Parent=gene-argS;Dbxref=GOA:P45840,InterPro:IPR001278,InterPro:IPR001412,InterPro:IPR005148,InterPro:IPR008909,InterPro:IPR009080,InterPro:IPR014729,NCBI_GP:CAC31508.1;Name=CAC31508.1;Note=Identical to the previously sequenced Mycobacterium leprae arginyl-tRNA synthetase (EC 6.1.1.19) (arginine--tRNA ligase) SW:SYR_MYCLE (P45840) (550 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 550 aa overlap. Also highly similar to many other arginyl-tRNA synthetases including: Mycobacterium tuberculosis SW:SYR_MYCTU (Q10609) (550 aa)%3B Fasta score E(): 0%2C 84.9%25 identity in 550 aa overlap and Brevibacterium lactofermentum SW:SYR_BRELA (P41253) (550 aa)%3B Fasta score E(): 0%2C 63.8%25 identity in 550 aa overlap. Contains Pfam match to entry PF00750 tRNA-synt_1d%2C tRNA synthetases class I (R). Contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature.;gbkey=CDS;gene=argS;product=arginyl-tRNA synthase;protein_id=CAC31508.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1316580	1318220	.	+	.	ID=id-argS;Note=Pfam match to entry PF00750 tRNA-synt_1d%2C tRNA synthetases class I (R)%2C score 1082.30%2C E-value 0;gbkey=misc_feature;gene=argS
AL450380.1	EMBL	sequence_feature	1316964	1316993	.	+	.	ID=id-argS-2;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature;gbkey=misc_feature;gene=argS
AL450380.1	EMBL	gene	1318220	1319638	.	+	.	ID=gene-lysA;Name=lysA;gbkey=Gene;gene=lysA;gene_biotype=protein_coding;gene_synonym=ML1128
AL450380.1	EMBL	CDS	1318220	1319638	.	+	0	ID=cds-CAC31509.1;Parent=gene-lysA;Dbxref=GOA:Q50140,InterPro:IPR000183,InterPro:IPR002986,InterPro:IPR009006,InterPro:IPR022643,InterPro:IPR022644,InterPro:IPR022653,InterPro:IPR029066,NCBI_GP:CAC31509.1;Name=CAC31509.1;Note=Previously sequenced Mycobacterium leprae TR:Q50140 (EMBL:U15186) (495 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 472 aa overlap. Highly similar to many diaminopimelate decarboxylases (EC 4.1.1.20) involved in the last step of lysine biosynthesis e.g. Mycobacterium tuberculosis%2C LysA%2C SW:DCDA_MYCTU (P31848) (447 aa)%3B Fasta score E(): 0%2C 86.8%25 identity in 446 aa overlap. Contains Pfam match to entry PF00750 tRNA-synt_1d%2C tRNA synthetases class I (R). Contains Pfam match to entry PF00278 Orn_DAP_Arg_deC%2C Pyridoxal-dependent decarboxylase. Contains PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.;gbkey=CDS;gene=lysA;product=diaminopimelate decarboxylase;protein_id=CAC31509.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1318418	1319542	.	+	.	ID=id-lysA;Note=Pfam match to entry PF00278 Orn_DAP_Arg_deC%2C Pyridoxal-dependent decarboxylase%2C score 337.70%2C E-value 3.8e-100;gbkey=misc_feature;gene=lysA
AL450380.1	EMBL	sequence_feature	1318499	1318555	.	+	.	ID=id-lysA-2;Note=PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site;gbkey=misc_feature;gene=lysA
AL450380.1	EMBL	ribosome_entry_site	1319632	1319637	.	+	.	ID=id-lysA-3;Parent=gene-lysA;gbkey=regulatory;gene=lysA;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1319642	1320967	.	+	.	ID=gene-hom;Name=hom;gbkey=Gene;gene=hom;gene_biotype=protein_coding;gene_synonym=ML1129
AL450380.1	EMBL	CDS	1319642	1320967	.	+	0	ID=cds-CAC31510.1;Parent=gene-hom;Dbxref=GOA:P46806,InterPro:IPR001342,InterPro:IPR002912,InterPro:IPR005106,InterPro:IPR016040,InterPro:IPR016204,InterPro:IPR019811,NCBI_GP:CAC31510.1;Name=CAC31510.1;Note=Identical to the previously sequenced Mycobacterium leprae homoserine dehydrogenase (EC 1.1.1.3) SW:DHOM_MYCLE (P46806) (441 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 441 aa overlap. Also highly similar to orthologues from Mycobacterium tuberculosis SW:DHOM_MYCTU (Q10601) (441 aa)%3B Fasta score E(): 0%2C 89.5%25 identity in 438 aa overlap and Corynebacterium glutamicum SW:DHOM_CORGL (P08499) (445 aa)%3B Fasta score E(): 0%2C 60.3%25 identity in 431 aa overlap. Contains Pfam match to entry PF00742 Homoserine_dh%2C Homoserine dehydrogenase. Contains Pfam match to entry PF01842 ACT%2C ACT domain. Contains PS01042 Homoserine dehydrogenase signature.;gbkey=CDS;gene=hom;product=homoserine dehydrogenase;protein_id=CAC31510.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1319696	1320619	.	+	.	ID=id-hom;Note=Pfam match to entry PF00742 Homoserine_dh%2C Homoserine dehydrogenase%2C score 554.10%2C E-value 9e-163;gbkey=misc_feature;gene=hom
AL450380.1	EMBL	sequence_feature	1320194	1320262	.	+	.	ID=id-hom-2;Note=PS01042 Homoserine dehydrogenase signature;gbkey=misc_feature;gene=hom
AL450380.1	EMBL	sequence_feature	1320704	1320940	.	+	.	ID=id-hom-3;Note=Pfam match to entry PF01842 ACT%2C ACT domain%2C score 47.40%2C E-value 3.2e-10;gbkey=misc_feature;gene=hom
AL450380.1	EMBL	gene	1320964	1322046	.	+	.	ID=gene-thrC;Name=thrC;gbkey=Gene;gene=thrC;gene_biotype=protein_coding;gene_synonym=ML1130
AL450380.1	EMBL	CDS	1320964	1322046	.	+	0	ID=cds-CAC31511.1;Parent=gene-thrC;Dbxref=GOA:P45837,InterPro:IPR000634,InterPro:IPR001926,InterPro:IPR004450,InterPro:IPR026260,NCBI_GP:CAC31511.1;Name=CAC31511.1;Note=Identical to the previously sequenced Mycobacterium leprae probable threonine synthase (EC 4.2.99.2) SW:THRC_MYCLE (P45837%3B) (360 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 360 aa overlap. Also highly similar to many other threonine synthases e.g. Mycobacterium tuberculosis SW:THRC_MYCTU (Q10610) (360 aa)%3B Fasta score E(): 0%2C 94.9%25 identity in 354 aa overlap and Brevibacterium lactofermentum SW:THRC_BRELA (P09123) (352 aa)%3B Fasta score E(): 0%2C 57.9%25 identity in 337 aa overlap. Contains Pfam match to entry PF00291 S_T_dehydratase%2C Pyridoxal-phosphate dependent enzyme. Contains PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site.;gbkey=CDS;gene=thrC;product=threonine synthase;protein_id=CAC31511.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1321057	1321947	.	+	.	ID=id-thrC;Note=Pfam match to entry PF00291 S_T_dehydratase%2C Pyridoxal-phosphate dependent enzyme%2C score 330.20%2C E-value 2.3e-95;gbkey=misc_feature;gene=thrC
AL450380.1	EMBL	sequence_feature	1321141	1321182	.	+	.	ID=id-thrC-2;Note=PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site;gbkey=misc_feature;gene=thrC
AL450380.1	EMBL	gene	1322114	1323061	.	+	.	ID=gene-thrB;Name=thrB;gbkey=Gene;gene=thrB;gene_biotype=protein_coding;gene_synonym=ML1131
AL450380.1	EMBL	CDS	1322114	1323061	.	+	0	ID=cds-CAC31512.1;Parent=gene-thrB;Dbxref=GOA:P45836,InterPro:IPR000870,InterPro:IPR006203,InterPro:IPR006204,InterPro:IPR013750,InterPro:IPR014721,InterPro:IPR020568,NCBI_GP:CAC31512.1;Name=CAC31512.1;Note=Identical to the previously sequenced Mycobacterium leprae homoserine kinase (EC 2.7.1.39) SW:KHSE_MYCLE (P45836) (314 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 314 aa overlap. Also highly similar to many other homoserine kinases including: Mycobacterium tuberculosis SW:KHSE_MYCTU (Q10603) (316 aa)%3B Fasta score E(): 0%2C 82.0%25 identity in 311 aa overlap and Corynebacterium glutamicum SW:KHSE_CORGL (P08210) (308 aa)%3B Fasta score E(): 0%2C 48.7%25 identity in 312 aa overlap. Contains Pfam match to entry PF00288 GHMP_kinases%2C GHMP kinases putative ATP-binding proteins. Contains PS00627 GHMP kinases putative ATP-binding domain.;gbkey=CDS;gene=thrB;product=homoserine kinase;protein_id=CAC31512.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1322333	1322536	.	+	.	ID=id-thrB;Note=Pfam match to entry PF00288 GHMP_kinases%2C GHMP kinases putative ATP-binding proteins%2C score 76.30%2C E-value 3.8e-20;gbkey=misc_feature;gene=thrB
AL450380.1	EMBL	sequence_feature	1322396	1322431	.	+	.	ID=id-thrB-2;Note=PS00627 GHMP kinases putative ATP-binding domain;gbkey=misc_feature;gene=thrB
AL450380.1	EMBL	gene	1323331	1325163	.	+	.	ID=gene-rho;Name=rho;gbkey=Gene;gene=rho;gene_biotype=protein_coding;gene_synonym=ML1132
AL450380.1	EMBL	CDS	1323331	1325163	.	+	0	ID=cds-CAC31513.1;Parent=gene-rho;Dbxref=GOA:P45835,InterPro:IPR000194,InterPro:IPR003593,InterPro:IPR004665,InterPro:IPR011112,InterPro:IPR011113,InterPro:IPR011129,InterPro:IPR012340,InterPro:IPR027417,NCBI_GP:CAC31513.1;Name=CAC31513.1;Note=Identical to the previously sequenced Mycobacterium leprae transcription termination factor Rho SW:RHO_MYCLE (P45835) (610 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 610 aa overlap. Also highly similar to many other transcriptional terminators ihncluding: Mycobacterium tuberculosis SW:RHO_MYCTU (Q10607) (602 aa)%3B Fasta score E(): 0%2C 81.5%25 identity in 616 aa overlap and Micrococcus luteus SW:RHO_MICLU (P52154) (690 aa)%3B Fasta score E(): 0%2C 66.0%25 identity in 467 aa overlap. Contains Pfam match to entry PF00006 ATP-synt_ab%2C ATP synthase alpha/beta family.;gbkey=CDS;gene=rho;product=transcription termination factor Rho;protein_id=CAC31513.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1324030	1324977	.	+	.	ID=id-rho;Note=Pfam match to entry PF00006 ATP-synt_ab%2C ATP synthase alpha/beta family%2C score -74.70%2C E-value 9.9e-06;gbkey=misc_feature;gene=rho
AL450380.1	EMBL	gene	1325474	1325728	.	+	.	ID=gene-rpmE;Name=rpmE;gbkey=Gene;gene=rpmE;gene_biotype=protein_coding;gene_synonym=ML1133
AL450380.1	EMBL	CDS	1325474	1325728	.	+	0	ID=cds-CAC31514.1;Parent=gene-rpmE;Dbxref=GOA:P45834,InterPro:IPR002150,InterPro:IPR027491,NCBI_GP:CAC31514.1;Name=CAC31514.1;Note=Identical to the previously sequenced Mycobacterium leprae 50s ribosomal protein L31 SW:RL31_MYCLE (P45834) (84 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 84 aa overlap%2C as well as being highly similar to many others e.g. Mycobacterium tuberculosis SW:RL31_MYCTU (Q10608) (80 aa)%3B Fasta score E(): 5.8e-27%2C 89.6%25 identity in 77 aa overlap and Escherichia coli SW:RL31_ECOLI (P02432) (70 aa)%3B Fasta score E(): 3.4e-11%2C 53.8%25 identity in 65 aa overlap. Contains Pfam match to entry PF01197 Ribosomal_L31%2C Ribosomal protein L31. Contains PS00190 Cytochrome c family heme-binding site signature. Contains PS01143 Ribosomal protein L31 signature.;gbkey=CDS;gene=rpmE;product=50S ribosomal protein L31;protein_id=CAC31514.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1325474	1325677	.	+	.	ID=id-rpmE;Note=Pfam match to entry PF01197 Ribosomal_L31%2C Ribosomal protein L31%2C score 160.50%2C E-value 2.9e-44;gbkey=misc_feature;gene=rpmE
AL450380.1	EMBL	sequence_feature	1325585	1325602	.	+	.	ID=id-rpmE-2;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;gene=rpmE
AL450380.1	EMBL	sequence_feature	1325597	1325653	.	+	.	ID=id-rpmE-3;Note=PS01143 Ribosomal protein L31 signature;gbkey=misc_feature;gene=rpmE
AL450380.1	EMBL	ribosome_entry_site	1325809	1325813	.	+	.	ID=id-AL450380.1:1325809..1325813;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1325819	1326904	.	+	.	ID=gene-prfA;Name=prfA;gbkey=Gene;gene=prfA;gene_biotype=protein_coding;gene_synonym=ML1134
AL450380.1	EMBL	CDS	1325819	1326904	.	+	0	ID=cds-CAC31515.1;Parent=gene-prfA;Dbxref=GOA:P45833,InterPro:IPR000352,InterPro:IPR004373,InterPro:IPR005139,InterPro:IPR014720,NCBI_GP:CAC31515.1;Name=CAC31515.1;Note=Identical to the previously sequenced Mycobacterium leprae peptide chain release factor 1 (RF-1)%2C directing the termination of translation%2C SW:RF1_MYCLE (P45833) (357 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 357 aa overlap. Also highly similar to many other Prokaryotic and Eukaryotic chain release factors e.g. from Mycobacterium tuberculosis SW:RF1_MYCTU (Q10605) (357 aa)%3B Fasta score E(): 0%2C 89.4%25 identity in 360 aa overlap and Kluyveromyces lactis (Yeast) SW:RF1M_KLULA (P41767) (396 aa)%3B Fasta score E(): 0%2C 39.9%25 identity in 368 aa overlap. Contains Pfam match to entry PF00472 RF-1%2C Peptidyl-tRNA hydrolase domain. Contains PS00745 Prokaryotic-type class I peptide chain release factors signature.%3B~ML0667;gbkey=CDS;gene=prfA;product=peptide chain release factor 1;protein_id=CAC31515.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1326455	1326796	.	+	.	ID=id-prfA;Note=Pfam match to entry PF00472 RF-1%2C Peptidyl-tRNA hydrolase domain%2C score 238.90%2C E-value 7.4e-68;gbkey=misc_feature;gene=prfA
AL450380.1	EMBL	sequence_feature	1326515	1326565	.	+	.	ID=id-prfA-2;Note=PS00745 Prokaryotic-type class I peptide chain release factors signature;gbkey=misc_feature;gene=prfA
AL450380.1	EMBL	gene	1326901	1327767	.	+	.	ID=gene-ML1135;Name=ML1135;gbkey=Gene;gene=ML1135;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1326901	1327767	.	+	0	ID=cds-CAC31516.1;Parent=gene-ML1135;Dbxref=GOA:P45832,InterPro:IPR004556,InterPro:IPR019874,InterPro:IPR029063,NCBI_GP:CAC31516.1;Name=CAC31516.1;Note=Highly similar to numerous members of the HemK family of modification methylases such as Mycobacterium tuberculosis%2C Rv1300%2C SW:HEMK_MYCTU (Q10602) (325 aa)%3B Fasta score E(): 0%2C 73.9%25 identity in 284 aa overlap and Escherichia coli SW:HEMK_ECOLI (P37186) (277 aa)%3B Fasta score E(): 2.4e-17%2C 32.5%25 identity in 277 aa overlap.;gbkey=CDS;gene=ML1135;product=possible protoporphyrinogen oxidase;protein_id=CAC31516.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1327800	1327804	.	+	.	ID=id-AL450380.1:1327800..1327804;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1327807	1328469	.	+	.	ID=gene-ML1136;Name=ML1136;gbkey=Gene;gene=ML1136;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1327807	1328469	.	+	0	ID=cds-CAC31517.1;Parent=gene-ML1136;Dbxref=GOA:P45831,InterPro:IPR006070,InterPro:IPR017945,NCBI_GP:CAC31517.1;Name=CAC31517.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein SW:YD01_MYCLE (P45831) (220 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 220 aa overlap. Also highly similar to several other proteins of undefined function e.g. Mycobacterium tuberculosis Rv1301 SW:YD01_MYCTU (Q10618) (217 aa)%3B Fasta score E(): 0%2C 83.3%25 identity in 215 aa overlap. Contains Pfam match to entry PF01300 Sua5_yciO_yrdC%2C SUA5/yciO/yrdC family. Contains PS01147 SUA5/yciO/yrdC family signature.;gbkey=CDS;gene=ML1136;product=conserved hypothetical protein;protein_id=CAC31517.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1327876	1328406	.	+	.	ID=id-ML1136;Note=Pfam match to entry PF01300 Sua5_yciO_yrdC%2C SUA5/yciO/yrdC family%2C score 268.20%2C E-value 1.1e-76;gbkey=misc_feature;gene=ML1136
AL450380.1	EMBL	sequence_feature	1327900	1327938	.	+	.	ID=id-ML1136-2;Note=PS01147 SUA5/yciO/yrdC family signature;gbkey=misc_feature;gene=ML1136
AL450380.1	EMBL	gene	1328500	1329699	.	+	.	ID=gene-ML1137;Name=ML1137;gbkey=Gene;gene=ML1137;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1328500	1329699	.	+	0	ID=cds-CAC31518.1;Parent=gene-ML1137;Dbxref=GOA:P45830,InterPro:IPR000715,NCBI_GP:CAC31518.1;Name=CAC31518.1;Note=Previously sequenced Mycobacterium leprae SW:RFE_MYCLE (P45830) (398 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 398 aa overlap. Similar to many including: Mycobacterium tuberculosis putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase SW:RFE_MYCTU (Q10606) (404 aa)%3B Fasta score E(): 0%2C 89.2%25 identity in 398 aa overlap and Bacillus subtilis phospho-N-acetylmuramoyl-pentapeptide-transferase SW:MRAY_BACSU (Q03521) (324 aa)%3B Fasta score E(): 1.9e-07%2C 28.6%25 identity in 297 aa overlap. Contains multiple possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF00953 Glycos_transf_4%2C Glycosyl transferase.;gbkey=CDS;gene=ML1137;product=possible glycosyltransferase;protein_id=CAC31518.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1328827	1329345	.	+	.	ID=id-ML1137;Note=Pfam match to entry PF00953 Glycos_transf_4%2C Glycosyl transferase%2C score 211.60%2C E-value 1.2e-59;gbkey=misc_feature;gene=ML1137
AL450380.1	EMBL	ribosome_entry_site	1329951	1329955	.	+	.	ID=id-AL450380.1:1329951..1329955;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1329962	1330423	.	+	.	ID=gene-ML1138;Name=ML1138;gbkey=Gene;gene=ML1138;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1329962	1330423	.	+	0	ID=cds-CAC31519.1;Parent=gene-ML1138;Dbxref=GOA:P53431,InterPro:IPR005598,NCBI_GP:CAC31519.1;Name=CAC31519.1;Note=Identical to the previously sequenced Mycobacterium leprae SW:YD03_MYCLE (P53431) (153 aa)%3B Fasta score E(): 0%2C 99.3%25 identity in 153 aa overlap. Also highly similar to Mycobacterium tuberculosis hypothetical protein Rv1303 SW:YD03_MYCTU (Q10619) (161 aa)%3B Fasta score E(): 0%2C 69.8%25 identity in 149 aa overlap. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1138;product=possible integral membrane protein;protein_id=CAC31519.1;transl_table=11
AL450380.1	EMBL	gene	1330420	1331175	.	+	.	ID=gene-atpB;Name=atpB;gbkey=Gene;gene=atpB;gene_biotype=protein_coding;gene_synonym=ML1139
AL450380.1	EMBL	CDS	1330420	1331175	.	+	0	ID=cds-CAC31520.1;Parent=gene-atpB;Dbxref=GOA:P45829,InterPro:IPR000568,InterPro:IPR023011,NCBI_GP:CAC31520.1;Name=CAC31520.1;Note=Identical to the previously sequenced Mycobacterium leprae ATP synthase A chain (EC 3.6.1.34) SW:ATP6_MYCLE (P45829) (251 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 251 aa overlap. Also highly similar to many other Prokaryotic and Eukaryotic proposed ATPase A chain family proteins e.g. Mycobacterium tuberculosis Rv1304 SW:ATP6_MYCTU (Q10591) (250 aa)%3B Fasta score E(): 0%2C 84.0%25 identity in 250 aa overlap and Nicotiana tabacum (Common tobacco) SW:ATPI_TOBAC (P06288) (247 aa)%3B Fasta score E(): 3.3e-18%2C 32.5%25 identity in 246 aa overlap. Contains possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF00119 ATP-synt_A%2C ATP synthase A chain. Contains PS00449 ATP synthase a subunit signature.;gbkey=CDS;gene=atpB;product=probable ATP synthase A chain protein;protein_id=CAC31520.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1330672	1331145	.	+	.	ID=id-atpB;Note=Pfam match to entry PF00119 ATP-synt_A%2C ATP synthase A chain%2C score 210.10%2C E-value 3.4e-59;gbkey=misc_feature;gene=atpB
AL450380.1	EMBL	sequence_feature	1330966	1330995	.	+	.	ID=id-atpB-2;Note=PS00449 ATP synthase a subunit signature;gbkey=misc_feature;gene=atpB
AL450380.1	EMBL	ribosome_entry_site	1331259	1331263	.	+	.	ID=id-AL450380.1:1331259..1331263;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1331271	1331516	.	+	.	ID=gene-atpE;Name=atpE;gbkey=Gene;gene=atpE;gene_biotype=protein_coding;gene_synonym=ML1140
AL450380.1	EMBL	CDS	1331271	1331516	.	+	0	ID=cds-CAC31521.1;Parent=gene-atpE;Dbxref=GOA:P45828,InterPro:IPR000454,InterPro:IPR002379,InterPro:IPR005953,InterPro:IPR020537,NCBI_GP:CAC31521.1;Name=CAC31521.1;Note=Identical to the previously sequenced Mycobacterium leprae ATP synthase C chain protein (EC 3.6.1.34) SW:ATPL_MYCLE (P45828) (81 aa)%3B Fasta score E(): 1.1e-25%2C 100.0%25 identity in 81 aa overlap. Also highly similar to many other Prokaryotic and Eukaryotic proposed ATPase C chain family proteins e.g. Mycobacterium tuberculosis Rv1305 SW:ATPL_MYCTU (Q10598) (81 aa)%3B Fasta score E(): 6.4e-24%2C 92.6%25 identity in 81 aa overlap and Euglena gracilis SW:ATPH_EUGGR (P10603) (81 aa)%3B Fasta score E(): 4.8e-06%2C 36.7%25 identity in 79 aa overlap. Contains possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF00137 ATP-synt_C%2C ATP synthase subunit C. Contains PS00605 ATP synthase c subunit signature.;gbkey=CDS;gene=atpE;product=probable ATP synthase C chain;protein_id=CAC31521.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1331292	1331501	.	+	.	ID=id-atpE;Note=Pfam match to entry PF00137 ATP-synt_C%2C ATP synthase subunit C%2C score 93.30%2C E-value 4.7e-24;gbkey=misc_feature;gene=atpE
AL450380.1	EMBL	sequence_feature	1331388	1331453	.	+	.	ID=id-atpE-2;Note=PS00605 ATP synthase c subunit signature;gbkey=misc_feature;gene=atpE
AL450380.1	EMBL	gene	1331538	1332050	.	+	.	ID=gene-atpF;Name=atpF;gbkey=Gene;gene=atpF;gene_biotype=protein_coding;gene_synonym=ML1141
AL450380.1	EMBL	CDS	1331538	1332050	.	+	0	ID=cds-CAC31522.1;Parent=gene-atpF;Dbxref=GOA:P45827,InterPro:IPR002146,InterPro:IPR028987,NCBI_GP:CAC31522.1;Name=CAC31522.1;Note=Identical to the previously sequenced Mycobacterium leprae ATP synthase B chain (EC 3.6.1.34) SW:ATPF_MYCLE (P45827) (170 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 170 aa overlap. Also highly similar to many other proposed ATPase B chain family proteins e.g. Mycobacterium tuberculosis Rv1306 SW:ATPF_MYCTU (Q10596) (171 aa)%3B Fasta score E(): 0%2C 79.5%25 identity in 171 aa overlap and Bacillus PS3 (Thermophilic bacterium PS-3) SW:ATPF_BACP3 (P09221) (163 aa)%3B Fasta score E(): 0.00044%2C 22.5%25 identity in 142 aa overlap. Contains possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF00430 ATP-synt_B%2C ATP synthase B/B' CF(0).;gbkey=CDS;gene=atpF;product=probable ATP synthase B chain;protein_id=CAC31522.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1331622	1332032	.	+	.	ID=id-atpF;Note=Pfam match to entry PF00430 ATP-synt_B%2C ATP synthase B/B' CF(0)%2C score 137.60%2C E-value 4.5e-38;gbkey=misc_feature;gene=atpF
AL450380.1	EMBL	gene	1332056	1333396	.	+	.	ID=gene-atpH;Name=atpH;gbkey=Gene;gene=atpH;gene_biotype=protein_coding;gene_synonym=ML1142
AL450380.1	EMBL	CDS	1332056	1333396	.	+	0	ID=cds-CAC31523.1;Parent=gene-atpH;Dbxref=GOA:P53006,InterPro:IPR000711,InterPro:IPR002146,InterPro:IPR028987,NCBI_GP:CAC31523.1;Name=CAC31523.1;Note=Previously sequenced Mycobacterium leprae SW:ATPD_MYCLE (P53006) (446 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 446 aa overlap. The N-terminus of this protein shares high sequence identity with many ATP synthase B chain proteins e.g. Haemophilus influenzae SW:ATPF_HAEIN (P43720) (156 aa)%3B Fasta score E(): 4.8e-05%2C 24.8%25 identity in 153 aa overlap and the C-terminus shares high homology with many ATP synthase [delta] chain proteins e.g. Streptomyces lividans SW:ATPD_STRLI (P50008) (272 aa)%3B Fasta score E(): 3.4e-20%2C 33.1%25 identity in 266 aa overlap_ATP. Also highly similar over the entire range to Mycobacterium tuberculosis Rv1307 SW:ATPD_MYCTU (Q10594) (446 aa)%3B Fasta score E(): 0%2C 77.8%25 identity in 446 aa overlap. Contains possible coiled-coils and a possible N-terminal signal sequence. Contains Pfam match to entry PF00213 OSCP%2C ATP synthase delta (OSCP) subunit. Contains Pfam match to entry PF00430 ATP-synt_B%2C ATP synthase B/B' CF(0). Contains PS01094 Uncharacterized protein family UPF0076 signature.;gbkey=CDS;gene=atpH;product=bi-domained ATP synthase B%2C [Delta] chain protein;protein_id=CAC31523.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1332062	1332526	.	+	.	ID=id-atpH;Note=Pfam match to entry PF00430 ATP-synt_B%2C ATP synthase B/B' CF(0)%2C score 58.70%2C E-value 1.6e-15;gbkey=misc_feature;gene=atpH
AL450380.1	EMBL	sequence_feature	1332746	1332811	.	+	.	ID=id-atpH-2;Note=PS01094 Uncharacterized protein family UPF0076 signature;gbkey=misc_feature;gene=atpH
AL450380.1	EMBL	sequence_feature	1333166	1333360	.	+	.	ID=id-atpH-3;Note=Pfam match to entry PF00213 OSCP%2C ATP synthase delta (OSCP) subunit%2C score 39.40%2C E-value 1.4e-10;gbkey=misc_feature;gene=atpH
AL450380.1	EMBL	gene	1333458	1335134	.	+	.	ID=gene-atpA;Name=atpA;gbkey=Gene;gene=atpA;gene_biotype=protein_coding;gene_synonym=ML1143
AL450380.1	EMBL	CDS	1333458	1335134	.	+	0	ID=cds-CAC31524.1;Parent=gene-atpA;Dbxref=GOA:P45825,InterPro:IPR000194,InterPro:IPR000793,InterPro:IPR004100,InterPro:IPR005294,InterPro:IPR020003,InterPro:IPR023366,InterPro:IPR027417,NCBI_GP:CAC31524.1;Name=CAC31524.1;Note=Identical to the previously sequenced Mycobacterium leprae ATP synthase alpha chain (EC 3.6.1.34) SW:ATPA_MYCLE (P45825) (558 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 558 aa overlap. Also highly similar tomany otherproposed ATPase alpha chain family proteins e.g. Mycobacterium tuberculosis Rv1308 TR:ATPA_MYCTU and Streptomyces lividans SW:ATPA_STRLI (P50001) (528 aa)%3B Fasta score E(): 0%2C 69.0%25 identity in 516 aa overlap. Contains Pfam match to entry PF00006 ATP-synt_ab%2C ATP synthase alpha/beta family. Contains Pfam match to entry PF00422 ATP-synt_A-c%2C ATP synthase Alpha chain%2C C terminal. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00152 ATP synthase alpha and beta subunits signature.;gbkey=CDS;gene=atpA;product=ATP synthase [alpha] chain;protein_id=CAC31524.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1333545	1334585	.	+	.	ID=id-atpA;Note=Pfam match to entry PF00006 ATP-synt_ab%2C ATP synthase alpha/beta family%2C score 570.00%2C E-value 1.5e-167;gbkey=misc_feature;gene=atpA
AL450380.1	EMBL	sequence_feature	1333971	1333994	.	+	.	ID=id-atpA-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=atpA
AL450380.1	EMBL	sequence_feature	1334553	1334582	.	+	.	ID=id-atpA-3;Note=PS00152 ATP synthase alpha and beta subunits signature;gbkey=misc_feature;gene=atpA
AL450380.1	EMBL	sequence_feature	1334586	1334990	.	+	.	ID=id-atpA-4;Note=Pfam match to entry PF00422 ATP-synt_A-c%2C ATP synthase Alpha chain%2C C terminal%2C score 317.90%2C E-value 1.4e-107;gbkey=misc_feature;gene=atpA
AL450380.1	EMBL	ribosome_entry_site	1335146	1335151	.	+	.	ID=id-AL450380.1:1335146..1335151;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1335152	1336048	.	+	.	ID=gene-atpG;Name=atpG;gbkey=Gene;gene=atpG;gene_biotype=protein_coding;gene_synonym=ML1144
AL450380.1	EMBL	CDS	1335152	1336048	.	+	0	ID=cds-CAC31525.1;Parent=gene-atpG;Dbxref=GOA:P45824,InterPro:IPR000131,InterPro:IPR023632,InterPro:IPR023633,NCBI_GP:CAC31525.1;Name=CAC31525.1;Note=Identical to the previously sequenced Mycobacterium leprae ATP synthase gamma chain (EC 3.6.1.34) SW:ATPG_MYCLE (P45824) (298 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 298 aa overlap. Also highly similar to many other proposed ATPase gamma chain family proteins e.g. Mycobacterium tuberculosis Rv1309 SW:ATPG_MYCTU (Q10597) (305 aa)%3B Fasta score E(): 0%2C 83.9%25 identity in 305 aa overlap and Streptomyces lividans SW:ATPG_STRLI (P50007) (302 aa)%3B Fasta score E(): 0%2C 48.2%25 identity in 301 aa overlap. Contains Pfam match to entry PF00231 ATP-synt%2C ATP synthase. Contains PS00153 ATP synthase gamma subunit signature.;gbkey=CDS;gene=atpG;product=ATP synthase [gamma] chain;protein_id=CAC31525.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1335194	1336033	.	+	.	ID=id-atpG;Note=Pfam match to entry PF00231 ATP-synt%2C ATP synthase%2C score 478.40%2C E-value 5.5e-140;gbkey=misc_feature;gene=atpG
AL450380.1	EMBL	sequence_feature	1335989	1336030	.	+	.	ID=id-atpG-2;Note=PS00153 ATP synthase gamma subunit signature;gbkey=misc_feature;gene=atpG
AL450380.1	EMBL	gene	1336075	1337532	.	+	.	ID=gene-atpD;Name=atpD;gbkey=Gene;gene=atpD;gene_biotype=protein_coding;gene_synonym=ML1145
AL450380.1	EMBL	CDS	1336075	1337532	.	+	0	ID=cds-CAC31526.1;Parent=gene-atpD;Dbxref=GOA:P45823,InterPro:IPR000194,InterPro:IPR000793,InterPro:IPR003593,InterPro:IPR004100,InterPro:IPR005722,InterPro:IPR020003,InterPro:IPR024034,InterPro:IPR027417,NCBI_GP:CAC31526.1;Name=CAC31526.1;Note=Identical to the previously sequenced Mycobacterium leprae ATP synthase beta chain (EC 3.6.1.34) SW:ATPB_MYCLE (P45823) (485 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 485 aa overlap. Also highly similar to many other proposed ATPase beta chain family proteins e.g. Mycobacterium tuberculosis Rv1310 SW:ATPB_MYCTU (Q10593) (486 aa)%3B Fasta score E(): 0%2C 92.6%25 identity in 484 aa overlap and Streptomyces lividan SW:ATPB_STRLI (P50004) (477 aa)%3B Fasta score E(): 0%2C 70.3%25 identity in 478 aa overlap. Contains Pfam match to entry PF00006 ATP-synt_ab%2C ATP synthase alpha/beta family. Contains Pfam match to entry PF00306 ATP-synt_ab_C%2C ATP synthase ab C terminal. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00152 ATP synthase alpha and beta subunits signature.;gbkey=CDS;gene=atpD;product=ATP synthase [beta] chain;protein_id=CAC31526.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1336147	1337166	.	+	.	ID=id-atpD;Note=Pfam match to entry PF00006 ATP-synt_ab%2C ATP synthase alpha/beta family%2C score 526.60%2C E-value 1.8e-154;gbkey=misc_feature;gene=atpD
AL450380.1	EMBL	sequence_feature	1336582	1336605	.	+	.	ID=id-atpD-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=atpD
AL450380.1	EMBL	sequence_feature	1337134	1337163	.	+	.	ID=id-atpD-3;Note=PS00152 ATP synthase alpha and beta subunits signature;gbkey=misc_feature;gene=atpD
AL450380.1	EMBL	sequence_feature	1337230	1337526	.	+	.	ID=id-atpD-4;Note=Pfam match to entry PF00306 ATP-synt_ab_C%2C ATP synthase ab C terminal%2C score 185.20%2C E-value 1e-51;gbkey=misc_feature;gene=atpD
AL450380.1	EMBL	gene	1337565	1337930	.	+	.	ID=gene-atpC;Name=atpC;gbkey=Gene;gene=atpC;gene_biotype=protein_coding;gene_synonym=ML1146
AL450380.1	EMBL	CDS	1337565	1337930	.	+	0	ID=cds-CAC31527.1;Parent=gene-atpC;Dbxref=GOA:P45822,InterPro:IPR001469,InterPro:IPR020546,NCBI_GP:CAC31527.1;Name=CAC31527.1;Note=Identical to the previously sequenced Mycobacterium leprae ATP synthase epsilon chain (EC 3.6.1.34) SW:ATPE_MYCLE (P45822) (124 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 121 aa overlap. Also highly similar to many other proposed ATPase epsilon chain family proteins e.g. Mycobacterium tuberculosis Rv1311 SW:ATPE_MYCTU (Q10595) (121 aa)%3B Fasta score E(): 0%2C 87.6%25 identity in 121 aa overlap and Bacillus firmus SW:ATPE_BACFI (P22480) (133 aa)%3B Fasta score E(): 6.3e-09%2C 41.3%25 identity in 104 aa overlap. Contains Pfam match to entry PF00401 ATP-synt_DE%2C ATP synthase%2C Delta/Epsilon chain.;gbkey=CDS;gene=atpC;product=ATP synthase [epsilon] chain;protein_id=CAC31527.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1337568	1337906	.	+	.	ID=id-atpC;Note=Pfam match to entry PF00401 ATP-synt_DE%2C ATP synthase%2C Delta/Epsilon chain%2C score 154.00%2C E-value 2.6e-42;gbkey=misc_feature;gene=atpC
AL450380.1	EMBL	gene	1337937	1338380	.	+	.	ID=gene-ML1147;Name=ML1147;gbkey=Gene;gene=ML1147;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1337937	1338380	.	+	0	ID=cds-CAC31528.1;Parent=gene-ML1147;Dbxref=GOA:P53432,InterPro:IPR019675,NCBI_GP:CAC31528.1;Name=CAC31528.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein SW:YD12_MYCLE (P53432) (147 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 147 aa overlap. Also highly similar to Mycobacterium tuberculosis hypothetical protein Rv1312 TR:YD12_MYCTU. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=ML1147;product=possible secreted protein;protein_id=CAC31528.1;transl_table=11
AL450380.1	EMBL	gene	1338519	1338674	.	-	.	ID=gene-ML1148;Name=ML1148;gbkey=Gene;gene=ML1148;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1338519	1338674	.	-	0	ID=cds-CAC31529.1;Parent=gene-ML1148;Dbxref=UniProtKB/TrEMBL:Q7AQ91,NCBI_GP:CAC31529.1;Name=CAC31529.1;Note=Identical to the previously sequenced Mycobacterium leprae TR:Q50137 (EMBL:U15186) (51 aa)%3B Fasta score E(): 4.9e-22%2C 100.0%25 identity in 51 aa overlap.;gbkey=CDS;gene=ML1148;product=doubtful CDS;protein_id=CAC31529.1;transl_table=11
AL450380.1	EMBL	gene	1338887	1339462	.	-	.	ID=gene-ML1149;Name=ML1149;gbkey=Gene;gene=ML1149;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1338887	1339462	.	-	0	ID=cds-CAC31530.1;Parent=gene-ML1149;Dbxref=GOA:P53523,InterPro:IPR016030,InterPro:IPR029499,NCBI_GP:CAC31530.1;Name=CAC31530.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein SW:YD14_MYCLE (P53523) (191 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 191 aa overlap. Also similar to many other proteins of undefined function e.g. Mycobacterium tuberculosis hypothetical protein Rv1314c SW:YD14_MYCTU (Q10622) (193 aa)%3B Fasta score E(): 0%2C 81.2%25 identity in 191 aa overlap. Contains Pfam match to entry PF01923 DUF80%2C Protein of unknown function.;gbkey=CDS;gene=ML1149;product=conserved hypothetical protein;protein_id=CAC31530.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1338920	1339441	.	-	.	ID=id-ML1149;Note=Pfam match to entry PF01923 DUF80%2C Protein of unknown function%2C score 379.20%2C E-value 4.3e-110;gbkey=misc_feature;gene=ML1149
AL450380.1	EMBL	stem_loop	1339481	1339545	.	-	.	ID=id-AL450380.1:1339481..1339545;Note=65 bp palindrome;gbkey=stem_loop
AL450380.1	EMBL	gene	1339580	1340836	.	+	.	ID=gene-murA;Name=murA;gbkey=Gene;gene=murA;gene_biotype=protein_coding;gene_synonym=ML1150
AL450380.1	EMBL	CDS	1339580	1340836	.	+	0	ID=cds-CAC31531.1;Parent=gene-murA;Dbxref=GOA:P45821,InterPro:IPR001986,InterPro:IPR005750,InterPro:IPR013792,NCBI_GP:CAC31531.1;Name=CAC31531.1;Note=Identical to the previously sequenced Mycobacterium leprae UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) SW:MURA_MYCLE (P45821) (418 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 418 aa overlap representing the first step in peptidoglycan biosynthesis. Also highly similar to many other UDP-N-acetylglucosamine 1-carboxyvinyltransferases e.g. Mycobacterium tuberculosis Rv1315 SW:MURA_MYCTU (Q10604) (418 aa)%3B Fasta score E(): 0%2C 95.9%25 identity in 417 aa overlap and Escherichia coli SW:MURA_ECOLI (P2890) (419 aa)%3B Fasta score E(): 0%2C 45.7%25 identity in 416 aa overlap. Contains Pfam match to entry PF00275 EPSP_syntase%2C EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase).;gbkey=CDS;gene=murA;product=UDP-N-acetylglucosamine-1-carboxyvinyltransferase;protein_id=CAC31531.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1339598	1340797	.	+	.	ID=id-murA;Note=Pfam match to entry PF00275 EPSP_syntase%2C EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)%2C score -118.90%2C E-value 1.3e-07;gbkey=misc_feature;gene=murA
AL450380.1	EMBL	gene	1341144	1342692	.	+	.	ID=gene-rrs;Name=rrs;gbkey=Gene;gene=rrs;gene_biotype=rRNA
AL450380.1	EMBL	rRNA	1341144	1342692	.	+	.	ID=rna-rrs;Parent=gene-rrs;Note=16S ribosomal RNA gene. As assigned by Sela S.%2C Clark-Curtiss J.E. Gene 98:123-127 (1991) (EMBL:M58020);gbkey=rRNA;gene=rrs
AL450380.1	EMBL	exon	1341144	1342692	.	+	.	ID=exon-rrs-1;Parent=rna-rrs;Note=16S ribosomal RNA gene. As assigned by Sela S.%2C Clark-Curtiss J.E. Gene 98:123-127 (1991) (EMBL:M58020);gbkey=rRNA;gene=rrs
AL450380.1	EMBL	gene	1342976	1346100	.	+	.	ID=gene-rrl;Name=rrl;gbkey=Gene;gene=rrl;gene_biotype=rRNA
AL450380.1	EMBL	rRNA	1342976	1346100	.	+	.	ID=rna-rrl;Parent=gene-rrl;Note=23S ribosomal RNA gene as assigned by Liesack W.C et al.%2C (1991) FEBS Lett. 281:114-118;gbkey=rRNA;gene=rrl
AL450380.1	EMBL	exon	1342976	1346100	.	+	.	ID=exon-rrl-1;Parent=rna-rrl;Note=23S ribosomal RNA gene as assigned by Liesack W.C et al.%2C (1991) FEBS Lett. 281:114-118;gbkey=rRNA;gene=rrl
AL450380.1	EMBL	gene	1346186	1346301	.	+	.	ID=gene-rrf;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA
AL450380.1	EMBL	rRNA	1346186	1346301	.	+	.	ID=rna-rrf;Parent=gene-rrf;Note=5S ribosomal RNA gene as assigned by Liesack W.C et al.%2C (1991) FEBS Lett. 281:114-118;gbkey=rRNA;gene=rrf
AL450380.1	EMBL	exon	1346186	1346301	.	+	.	ID=exon-rrf-1;Parent=rna-rrf;Note=5S ribosomal RNA gene as assigned by Liesack W.C et al.%2C (1991) FEBS Lett. 281:114-118;gbkey=rRNA;gene=rrf
AL450380.1	EMBL	gene	1346360	1346857	.	-	.	ID=gene-ogt;Name=ogt;gbkey=Gene;gene=ogt;gene_biotype=protein_coding;gene_synonym=ML1151
AL450380.1	EMBL	CDS	1346360	1346857	.	-	0	ID=cds-CAC31532.1;Parent=gene-ogt;Dbxref=GOA:P52982,InterPro:IPR001497,InterPro:IPR008332,InterPro:IPR011991,InterPro:IPR014048,InterPro:IPR023546,NCBI_GP:CAC31532.1;Name=CAC31532.1;Note=Identical to the previously sequenced Mycobacterium leprae putative methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) SW:OGT_MYCLE (P52982) (165 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 165 aa overlap. Also highly similar to many others e.g. Mycobacterium tuberculosis Rv1316c SW:OGT_MYCTU (Q10627) (165 aa)%3B Fasta score E(): 0%2C 78.2%25 identity in 165 aa overlap and Bacillus subtilis SW:OGT_BACSU (P11742) (165 aa)%3B Fasta score E(): 1e-20%2C 44.7%25 identity in 159 aa overlap. Contains Pfam match to entry PF01035 Methyltransf_1%2C 6-O-methylguanine DNA methyltransferase. Contains PS00374 Methylated-DNA--protein-cysteine methyltransferase active site.;gbkey=CDS;gene=ogt;product=probable methylated-DNA-protein-cysteine methyltransferase;protein_id=CAC31532.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1346384	1346716	.	-	.	ID=id-ogt;Note=Pfam match to entry PF01035 Methyltransf_1%2C 6-O-methylguanine DNA methyltransferase%2C score 243.10%2C E-value 3.8e-69;gbkey=misc_feature;gene=ogt
AL450380.1	EMBL	sequence_feature	1346468	1346488	.	-	.	ID=id-ogt-2;Note=PS00374 Methylated-DNA--protein-cysteine methyltransferase active site;gbkey=misc_feature;gene=ogt
AL450380.1	EMBL	pseudogene	1346877	1348313	.	-	.	ID=gene-alkA;Name=alkA;gbkey=Gene;gene=alkA;gene_biotype=pseudogene;gene_synonym=ML1152;pseudo=true
AL450380.1	EMBL	CDS	1346877	1348313	.	-	0	ID=cds-alkA;Parent=gene-alkA;Note=Possible pseudogene of M. tuberculosis orthologue alkA (Best blastx score 233);gbkey=CDS;gene=alkA;product=DNA-3-methyladenine glycosidase II (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1348500	1349669	.	+	.	ID=gene-ML1153;Name=ML1153;gbkey=Gene;gene=ML1153;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1348500	1349669	.	+	0	ID=cds-ML1153;Parent=gene-ML1153;Note=Possible pseudogene similar to M. tuberculosis paralogue Rv0063 (Best blastx score 343);gbkey=CDS;gene=ML1153;product=probable oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1349723	1350952	.	-	.	ID=gene-ML1154;Name=ML1154;gbkey=Gene;gene=ML1154;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1349723	1350952	.	-	0	ID=cds-ML1154;Parent=gene-ML1154;Note=Possible pseudogene of M. tuberculosis orthologue Rv1318c (Best blastx score 336);gbkey=CDS;gene=ML1154;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1351359	1352021	.	+	.	ID=gene-ML1155;Name=ML1155;gbkey=Gene;gene=ML1155;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1351359	1352021	.	+	0	ID=cds-CAC31536.1;Parent=gene-ML1155;Dbxref=GOA:P53524,InterPro:IPR002793,NCBI_GP:CAC31536.1;Name=CAC31536.1;Note=Previously sequenced Mycobacterium leprae hypothetical protein SW:YD21_MYCLE (P53524) (201 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 193 aa overlap. Also highly similar to Mycobacterium tuberculosis hypothetical protein Rv1321 SW:YD21_MYCTU (Q10634) (226 aa)%3B Fasta score E(): 0%2C 88.2%25 identity in 220 aa overlap. Contains Pfam match to entry PF01939 DUF91%2C Protein of unknown function.;gbkey=CDS;gene=ML1155;product=conserved hypothetical protein;protein_id=CAC31536.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1351359	1352018	.	+	.	ID=id-ML1155;Note=Pfam match to entry PF01939 DUF91%2C Protein of unknown function%2C score 445.00%2C E-value 6.6e-130;gbkey=misc_feature;gene=ML1155
AL450380.1	EMBL	pseudogene	1352045	1352328	.	+	.	ID=gene-ML1156;Name=ML1156;gbkey=Gene;gene=ML1156;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1352045	1352328	.	+	0	ID=cds-ML1156;Parent=gene-ML1156;Note=Possible pseudogene of M. tuberculosis orthologue Rv1322 (Best blastx score 222);gbkey=CDS;gene=ML1156;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1352353	1352820	.	-	.	ID=gene-ML1157;Name=ML1157;gbkey=Gene;gene=ML1157;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1352353	1352820	.	-	0	ID=cds-CAC31538.1;Parent=gene-ML1157;Dbxref=InterPro:IPR004360,InterPro:IPR017515,InterPro:IPR029068,UniProtKB/TrEMBL:Q7AQ90,NCBI_GP:CAC31538.1;Name=CAC31538.1;Note=Identical to the previously sequenced Mycobacterium leprae TR:Q49717 (EMBL:U00014) (155 aa)%3B Fasta score E(): 0%2C 99.4%25 identity in 155 aa overlap. Also similar to Streptomyces coelicolor conserved hypothetical protein TR:CAB70628 (EMBL:AL137242) (146 aa)%3B Fasta score E(): 1.5e-19%2C 42.1%25 identity in 140 aa overlap and Haemophilus influenzae lactoylglutathione lyase (EC 4.4.1.5) SW:LGUL_HAEIN (P44638) (135 aa)%3B Fasta score E(): 0.69%2C 27.5%25 identity in 138 aa overlap. Contains Pfam match to entry PF01626 4HPPD_C%2C 4-hydroxyphenylpyruvate dioxygenase C terminal domain.;gbkey=CDS;gene=ML1157;product=conserved hypothetical protein;protein_id=CAC31538.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1352362	1352820	.	-	.	ID=id-ML1157;Note=Pfam match to entry PF01626 4HPPD_C%2C 4-hydroxyphenylpyruvate dioxygenase C terminal domain%2C score 179.90%2C E-value 4e-50;gbkey=misc_feature;gene=ML1157
AL450380.1	EMBL	gene	1352912	1354093	.	+	.	ID=gene-fadA4;Name=fadA4;gbkey=Gene;gene=fadA4;gene_biotype=protein_coding;gene_synonym=ML1158
AL450380.1	EMBL	CDS	1352912	1354093	.	+	0	ID=cds-CAC31539.1;Parent=gene-fadA4;Dbxref=GOA:P46707,InterPro:IPR002155,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR020610,InterPro:IPR020613,InterPro:IPR020615,InterPro:IPR020616,InterPro:IPR020617,NCBI_GP:CAC31539.1;Name=CAC31539.1;Note=Identical to the previously sequenced Mycobacterium leprae probable acetyl-CoA acetyltransferase (EC 2.3.1.9) SW:THIL_MYCLE (P46707) (393 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 393 aa overlap. Also highly similar to many others including: acetyl-CoA acetyltransferases from Alcaligenes eutrophus SW:THIL_ALCEU (P14611) (393 aa)%3B Fasta score E(): 0%2C 50.4%25 identity in 389 aa overlap and Mycobacterium tuberculosis (FadA4) Rv1323 SW:THIL_MYCTU (Q10629) (389 aa)%3B Fasta score E(): 0%2C 86.9%25 identity in 388 aa overlap. Contains Pfam match to entry PF00108 thiolase%2C Thiolase. Contains PS00098 Thiolases acyl-enzyme intermediate signature. Contains PS00099 Thiolases active site. Contains PS00737 Thiolases signature 2.%3B~ML2162;gbkey=CDS;gene=fadA4;product=possible acetyl-CoA C-acetyltransferase;protein_id=CAC31539.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1352912	1354090	.	+	.	ID=id-fadA4;Note=Pfam match to entry PF00108 thiolase%2C Thiolase%2C score 760.80%2C E-value 5.8e-225;gbkey=misc_feature;gene=fadA4
AL450380.1	EMBL	sequence_feature	1353161	1353217	.	+	.	ID=id-fadA4-2;Note=PS00098 Thiolases acyl-enzyme intermediate signature;gbkey=misc_feature;gene=fadA4
AL450380.1	EMBL	sequence_feature	1353926	1353976	.	+	.	ID=id-fadA4-3;Note=PS00737 Thiolases signature 2;gbkey=misc_feature;gene=fadA4
AL450380.1	EMBL	sequence_feature	1354031	1354072	.	+	.	ID=id-fadA4-4;Note=PS00099 Thiolases active site;gbkey=misc_feature;gene=fadA4
AL450380.1	EMBL	gene	1354280	1355185	.	+	.	ID=gene-ML1159;Name=ML1159;gbkey=Gene;gene=ML1159;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1354280	1355185	.	+	0	ID=cds-CAC31540.1;Parent=gene-ML1159;Dbxref=GOA:Q9CC76,InterPro:IPR005746,InterPro:IPR011990,InterPro:IPR012336,InterPro:IPR013766,UniProtKB/TrEMBL:Q9CC76,NCBI_GP:CAC31540.1;Name=CAC31540.1;Note=Previously sequenced Mycobacterium leprae TR:Q49716 (EMBL:U00014) (255 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 217 aa overlap. Highly similar to Mycobacterium tuberculosis Rv1324 SW:YD24_MYCTU (Q10636) (304 aa)%3B Fasta score E(): 0%2C 72.4%25 identity in 301 aa overlap. Also weakly similar in parts to several putative thioredoxins e.g. Alicyclobacillus acidocaldarius SW:THIO_ALIAC (P80579) (105 aa)%3B Fasta score E(): 0.00045%2C 27.1%25 identity in 107 aa overlap.;gbkey=CDS;gene=ML1159;product=conserved hypothetical protein;protein_id=CAC31540.1;transl_table=11
AL450380.1	EMBL	pseudogene	1355241	1357418	.	-	.	ID=gene-ML1160;Name=ML1160;gbkey=Gene;gene=ML1160;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1355241	1357418	.	-	0	ID=cds-ML1160;Parent=gene-ML1160;Note=Possible pseudogene of M. tuberculosis orthologue glgB (Best blastx score 959);gbkey=CDS;gene=ML1160;product=1%2C4-[alpha]-glucan branching enzyme (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1357444	1359540	.	-	.	ID=gene-ML1161;Name=ML1161;gbkey=Gene;gene=ML1161;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1357444	1359540	.	-	0	ID=cds-ML1161;Parent=gene-ML1161;Note=Possible pseudogene of M. tuberculosis orthologue Rv1327c (Best blastx score 650);gbkey=CDS;gene=ML1161;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1360092	1362290	.	+	.	ID=gene-ML1162;Name=ML1162;gbkey=Gene;gene=ML1162;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1360092	1362290	.	+	0	ID=cds-ML1162;Parent=gene-ML1162;Note=Possible pseudogene of M. tuberculosis orthologue glgP (Best blastx score 579);gbkey=CDS;gene=ML1162;product=possible glycogen phosphorylase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1363261	1364085	.	-	.	ID=gene-ML1163;Name=ML1163;gbkey=Gene;gene=ML1163;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1363261	1364085	.	-	0	ID=cds-ML1163;Parent=gene-ML1163;Note=Possible pseudogene of M. tuberculosis orthologue Rv3239c (Best blastx score 223);gbkey=CDS;gene=ML1163;product=possible antibiotic efflux protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1364066	1364506	.	-	.	ID=gene-ML1164;Name=ML1164;gbkey=Gene;gene=ML1164;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1364066	1364506	.	-	0	ID=cds-ML1164;Parent=gene-ML1164;Note=Possible pseudogene of M. tuberculosis orthologue Rv1330c (Best blastx score 280);gbkey=CDS;gene=ML1164;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1364612	1364938	.	+	.	ID=gene-ML1165;Name=ML1165;gbkey=Gene;gene=ML1165;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1364612	1364938	.	+	0	ID=cds-CAC31546.1;Parent=gene-ML1165;Dbxref=GOA:P53423,InterPro:IPR003769,InterPro:IPR014719,InterPro:IPR022935,NCBI_GP:CAC31546.1;Name=CAC31546.1;Note=Previously sequenced Mycobacterium leprae hypothetical protein SW:YD31_MYCLE (P53423) (94 aa)%3B Fasta score E(): 0%2C 98.9%25 identity in 94 aa overlap. Also highly similar to proteins of undefined function from Mycobacterium tuberculosis Rv1331 SW:YD31_MYCTU (Q10642) (101 aa)%3B Fasta score E(): 0%2C 84.2%25 identity in 101 aa overlap and Streptomyces coelicolor TR:Q9S2G5 (EMBL:AL096852) (105 aa)%3B Fasta score E(): 1.4e-20%2C 56.7%25 identity in 104 aa overlap.;gbkey=CDS;gene=ML1165;product=conserved hypothetical protein;protein_id=CAC31546.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1364954	1364957	.	+	.	ID=id-AL450380.1:1364954..1364957;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1364964	1365551	.	+	.	ID=gene-ML1166;Name=ML1166;gbkey=Gene;gene=ML1166;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1364964	1365551	.	+	0	ID=cds-CAC31547.1;Parent=gene-ML1166;Dbxref=InterPro:IPR018561,NCBI_GP:CAC31547.1;Name=CAC31547.1;Note=Previously sequenced Mycobacterium leprae hypothetical protein SW:YD32_MYCLE (P53424) (222 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 195 aa overlap. Also highly similar to proteins of undefined function from Mycobacterium tuberculosis Rv1332 SW:YD32_MYCTU (Q10643) (218 aa)%3B Fasta score E(): 0%2C 74.4%25 identity in 195 aa overlap and Streptomyces coelicolor TR:Q9S2G6 (EMBL:AL096852) (202 aa)%3B Fasta score E(): 1.5e-05%2C 34.6%25 identity in 188 aa overlap.;gbkey=CDS;gene=ML1166;product=conserved hypothetical protein;protein_id=CAC31547.1;transl_table=11
AL450380.1	EMBL	gene	1365551	1366639	.	+	.	ID=gene-ML1167;Name=ML1167;gbkey=Gene;gene=ML1167;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1365551	1366639	.	+	0	ID=cds-CAC31548.1;Parent=gene-ML1167;Dbxref=GOA:P53425,InterPro:IPR005321,InterPro:IPR016117,NCBI_GP:CAC31548.1;Name=CAC31548.1;Note=Previously sequenced Mycobacterium leprae hypothetical protein SW:YD33_MYCLE (P53425) (362 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 362 aa overlap. Similar to Flavobacterium sp. TR:Q57326 (EMBL:D26094) (355 aa)%3B Fasta score E(): 1.4e-11%2C 31.6%25 identity in 351 aa overlap endo-type 6-aminohexanoate oligomer hydrolase. Also similar to proteins of undefined function from Mycobacterium tuberculosis Rv1333 TR:YD33_MYCTU and Streptomyces coelicolor TR:CAB90977 (EMBL:AL355832) (348 aa)%3B Fasta score E(): 0%2C 48.2%25 identity in 365 aa overlap.;gbkey=CDS;gene=ML1167;product=possible hydrolase;protein_id=CAC31548.1;transl_table=11
AL450380.1	EMBL	pseudogene	1366632	1366995	.	+	.	ID=gene-ML1168;Name=ML1168;gbkey=Gene;gene=ML1168;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1366632	1366995	.	+	0	ID=cds-ML1168;Parent=gene-ML1168;Note=Possible pseudogene of M. tuberculosis orthologue Rv1334 (Best blastx score 127);gbkey=CDS;gene=ML1168;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1367134	1367390	.	+	.	ID=gene-ML1169;Name=ML1169;gbkey=Gene;gene=ML1169;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1367134	1367390	.	+	0	ID=cds-ML1169;Parent=gene-ML1169;Note=Possible pseudogene of M. tuberculosis orthologue Rv1335. Highly similar to Mycobacterium tuberculosis hypothetical protein Rv1335 9.5 KDa antigenic protein SW:CF10_MYCTU.;gbkey=CDS;gene=ML1169;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1367411	1368397	.	+	.	ID=gene-cysM;Name=cysM;gbkey=Gene;gene=cysM;gene_biotype=pseudogene;gene_synonym=ML1170;pseudo=true
AL450380.1	EMBL	CDS	1367411	1368397	.	+	0	ID=cds-cysM;Parent=gene-cysM;Note=Possible pseudogene of M. tuberculosis orthologue cysM (Rv1336) (Best blastx score 302);gbkey=CDS;gene=cysM;product=cysteine synthase B (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1368477	1368488	.	+	.	ID=id-AL450380.1:1368477..1368488;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1368492	1369208	.	+	.	ID=gene-ML1171;Name=ML1171;gbkey=Gene;gene=ML1171;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1368492	1369208	.	+	0	ID=cds-CAC31552.1;Parent=gene-ML1171;Dbxref=GOA:P53426,InterPro:IPR002610,InterPro:IPR022764,NCBI_GP:CAC31552.1;Name=CAC31552.1;Note=Previously sequenced Mycobacterium leprae hypothetical protein SW:YD37_MYCLE (P53426) (251 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 238 aa overlap. Also highly similar to other proteins of undefined function e.g. Mycobacterium tuberculosis hypothetical protein Rv1337 SW:YD37_MYCTU (Q10647) (240 aa)%3B Fasta score E(): 0%2C 73.2%25 identity in 231 aa overlap. Contains possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF01694 Rhomboid%2C Rhomboid family.;gbkey=CDS;gene=ML1171;product=possible conserved integral membrane protein;protein_id=CAC31552.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1368699	1369154	.	+	.	ID=id-ML1171;Note=Pfam match to entry PF01694 Rhomboid%2C Rhomboid family%2C score 158.10%2C E-value 1.6e-43;gbkey=misc_feature;gene=ML1171
AL450380.1	EMBL	gene	1369205	1370023	.	+	.	ID=gene-murI;Name=murI;gbkey=Gene;gene=murI;gene_biotype=protein_coding;gene_synonym=ML1172
AL450380.1	EMBL	CDS	1369205	1370023	.	+	0	ID=cds-CAC31553.1;Parent=gene-murI;Dbxref=GOA:P46705,InterPro:IPR001920,InterPro:IPR004391,InterPro:IPR015942,InterPro:IPR018187,NCBI_GP:CAC31553.1;Name=CAC31553.1;Note=Identical to the previously sequenced Mycobacterium leprae probable glutamate racemase (EC 5.1.1.3) SW:MURI_MYCLE (P46705) (272 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 272 aa overlap. Also highly similar to many others involved in peptidoglycan biosynthesis including glutamate racemases from Mycobacterium tuberculosis Rv1338 SW:MURI_MYCTU (Q10626) (271 aa)%3B Fasta score E(): 0%2C 88.9%25 identity in 271 aa overlap and Bacillus subtilis SW:MURI_BACSU (P94556) (272 aa)%3B Fasta score E(): 0%2C 42.2%25 identity in 268 aa overlap. Contains Pfam match to entry PF01177 Asp_Glu_race%2C Aspartate / glutamate racemase. Contains PS00924 Aspartate and glutamate racemases signature 2. Contains PS00923 Aspartate and glutamate racemases signature 1.;gbkey=CDS;gene=murI;product=glutamate racemase;protein_id=CAC31553.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1369226	1369867	.	+	.	ID=id-murI;Note=Pfam match to entry PF01177 Asp_Glu_race%2C Aspartate / glutamate racemase%2C score 396.40%2C E-value 2.8e-115;gbkey=misc_feature;gene=murI
AL450380.1	EMBL	sequence_feature	1369418	1369444	.	+	.	ID=id-murI-2;Note=PS00923 Aspartate and glutamate racemases signature 1;gbkey=misc_feature;gene=murI
AL450380.1	EMBL	sequence_feature	1369745	1369777	.	+	.	ID=id-murI-3;Note=PS00924 Aspartate and glutamate racemases signature 2;gbkey=misc_feature;gene=murI
AL450380.1	EMBL	gene	1370096	1370878	.	+	.	ID=gene-ML1173;Name=ML1173;gbkey=Gene;gene=ML1173;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1370096	1370878	.	+	0	ID=cds-CAC31554.1;Parent=gene-ML1173;Dbxref=InterPro:IPR001279,NCBI_GP:CAC31554.1;Name=CAC31554.1;Note=Previously sequenced Mycobacterium leprae hypothetical protein SW:YD39_MYCLE (P50474) (284 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 260 aa overlap. Also highly similar to several other proteins of unknown function e.g. Mycobacterium tuberculosis Rv1339 SW:YD39_MYCTU and Streptomyces coelicolor TR:Q9S2H3 (EMBL:AL096852) (250 aa)%3B Fasta score E(): 0%2C 43.0%25 identity in 256 aa overlap.;gbkey=CDS;gene=ML1173;product=conserved hypothetical protein;protein_id=CAC31554.1;transl_table=11
AL450380.1	EMBL	gene	1370968	1371747	.	+	.	ID=gene-rphA;Name=rphA;gbkey=Gene;gene=rphA;gene_biotype=protein_coding;gene_synonym=ML1174
AL450380.1	EMBL	CDS	1370968	1371747	.	+	0	ID=cds-CAC31555.1;Parent=gene-rphA;Dbxref=GOA:P37939,InterPro:IPR001247,InterPro:IPR002381,InterPro:IPR015847,InterPro:IPR018336,InterPro:IPR020568,InterPro:IPR027408,NCBI_GP:CAC31555.1;Name=CAC31555.1;Note=Identical to the previously sequenced Mycobacterium leprae probable ribonuclease PH (EC 2.7.7.56) SW:RNPH_MYCLE (P37939) (259 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 259 aa overlap. Also highly similar to many other ribonucleases including: Mycobacterium tuberculosis SW:RNPH_MYCTU (Q10628) (259 aa)%3B Fasta score E(): 0%2C 88.8%25 identity in 259 aa overlap and Escherichia coli SW:RNPH_ECOLI (P03842) (238 aa)%3B Fasta score E(): 0%2C 55.7%25 identity in 237 aa overlap. Contains Pfam match to entry PF01138 RNase_PH%2C 3' exoribonuclease family. Contains PS01277 Ribonuclease PH signature.;gbkey=CDS;gene=rphA;product=ribonuclease PH;protein_id=CAC31555.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1370977	1371648	.	+	.	ID=id-rphA;Note=Pfam match to entry PF01138 RNase_PH%2C 3' exoribonuclease family%2C score 286.30%2C E-value 3.9e-82;gbkey=misc_feature;gene=rphA
AL450380.1	EMBL	sequence_feature	1371319	1371357	.	+	.	ID=id-rphA-2;Note=PS01277 Ribonuclease PH signature;gbkey=misc_feature;gene=rphA
AL450380.1	EMBL	gene	1371782	1372444	.	+	.	ID=gene-ML1175;Name=ML1175;gbkey=Gene;gene=ML1175;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1371782	1372444	.	+	0	ID=cds-CAC31556.1;Parent=gene-ML1175;Dbxref=GOA:P52063,InterPro:IPR002637,InterPro:IPR020922,InterPro:IPR029001,NCBI_GP:CAC31556.1;Name=CAC31556.1;Note=Previously sequenced Mycobacterium leprae hypothetical protein TR:Q9S383 (EMBL:AL049191) (220 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 220 aa overlap. Also highly similar to many other proteins of undefined function including: Mycobacterium tuberculosis Rv1341 SW:YD41_MYCTU (Q10649) (204 aa)%3B Fasta score E(): 0%2C 82.4%25 identity in 205 aa overlap and Escherichia coli SW:YGGV_ECOLI (P52061) (197 aa)%3B Fasta score E(): 1e-23%2C 44.8%25 identity in 203 aa overlap. Contains Pfam match to entry PF01725 Ham1p_like%2C Ham1 family.;gbkey=CDS;gene=ML1175;product=conserved hypothetical protein;protein_id=CAC31556.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1371836	1372420	.	+	.	ID=id-ML1175;Note=Pfam match to entry PF01725 Ham1p_like%2C Ham1 family%2C score 337.60%2C E-value 1.4e-97;gbkey=misc_feature;gene=ML1175
AL450380.1	EMBL	gene	1372485	1372844	.	-	.	ID=gene-ML1176;Name=ML1176;gbkey=Gene;gene=ML1176;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1372485	1372844	.	-	0	ID=cds-CAC31557.1;Parent=gene-ML1176;Dbxref=GOA:P54133,InterPro:IPR023845,NCBI_GP:CAC31557.1;Name=CAC31557.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein SW:YD42_MYCLE (P54133) (119 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 119 aa overlap. Also highly similar to hypothetical proteins from Mycobacterium tuberculosis Rv1342c TR:YD42_MYCTU and Streptomyces coelicolor TR:Q9X948 (EMBL:AJ237976) (109 aa)%3B Fasta score E(): 7.7e-11%2C 36.5%25 identity in 96 aa overlap. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1176;product=possible conserved membrane protein;protein_id=CAC31557.1;transl_table=11
AL450380.1	EMBL	gene	1372841	1373221	.	-	.	ID=gene-ML1177;Name=ML1177;gbkey=Gene;gene=ML1177;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1372841	1373221	.	-	0	ID=cds-CAC31558.1;Parent=gene-ML1177;Dbxref=GOA:P54134,NCBI_GP:CAC31558.1;Name=CAC31558.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein SW:YD43_MYCLE (P54134) (126 aa)%3B Fasta score E(): 0%2C 99.2%25 identity in 126 aa overlap. Also highly similar to Mycobacterium tuberculosis Rv1343c SW:YD43_MYCTU (Q11013) (126 aa)%3B Fasta score E(): 0%2C 78.4%25 identity in 125 aa overlap. Contains a possible N-terminal signal sequence and an appropriately positioned Prokaryotic membrane lipoprotein lipid attachment site. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=ML1177;product=possible lipoprotein;protein_id=CAC31558.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1373162	1373194	.	-	.	ID=id-ML1177;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=ML1177
AL450380.1	EMBL	gene	1374076	1374158	.	+	.	ID=gene-leuW;Name=leuW;gbkey=Gene;gene=leuW;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	1374076	1374158	.	+	.	ID=rna-leuW;Parent=gene-leuW;Note=tRNA Leu anticodon TAG%2C Cove score 55.29;gbkey=tRNA;gene=leuW;product=tRNA-Leu
AL450380.1	EMBL	exon	1374076	1374158	.	+	.	ID=exon-leuW-1;Parent=rna-leuW;Note=tRNA Leu anticodon TAG%2C Cove score 55.29;gbkey=tRNA;gene=leuW;product=tRNA-Leu
AL450380.1	EMBL	pseudogene	1374947	1375675	.	+	.	ID=gene-ML1178;Name=ML1178;gbkey=Gene;gene=ML1178;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1374947	1375675	.	+	0	ID=cds-ML1178;Parent=gene-ML1178;Note=Possible pseudogene of M. tuberculosis orthologue fabG2 (Best blastx score 176);gbkey=CDS;gene=ML1178;product=possible 3-oxoacyl-[ACP] reductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1377207	1378301	.	+	.	ID=gene-ML1179;Name=ML1179;gbkey=Gene;gene=ML1179;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1377207	1378301	.	+	0	ID=cds-ML1179;Parent=gene-ML1179;gbkey=CDS;gene=ML1179;product=possible acyl-CoA dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	1380273	1381151	.	-	.	ID=id-AL450380.1:1380273..1381151;Note=100 %25 identical to bases 1221223..1222101;gbkey=repeat_region
AL450380.1	EMBL	gene	1380300	1380587	.	-	.	ID=gene-ML1180;Name=ML1180;gbkey=Gene;gene=ML1180;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1380300	1380587	.	-	0	ID=cds-CAC31561.1;Parent=gene-ML1180;Dbxref=InterPro:IPR009416,InterPro:IPR010310,NCBI_GP:CAC31561.1;Name=CAC31561.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49946 (EMBL:U15180) (95 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 95 aa overlap. Also similar to many Mycobacterium tuberculosis proteins with undefined function e.g. RV1793 TR:O53942 (EMBL:AL022021) (94 aa)%3B Fasta score E(): 4.3e-23%2C 65.2%25 identity in 92 aa overlap.;gbkey=CDS;gene=ML1180;product=conserved hypothetical protein;protein_id=CAC31561.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1380598	1380603	.	-	.	ID=id-AL450380.1:1380598..1380603;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1380639	1380941	.	-	.	ID=gene-ML1181;Name=ML1181;gbkey=Gene;gene=ML1181;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1380639	1380941	.	-	0	ID=cds-CAC31562.1;Parent=gene-ML1181;Dbxref=InterPro:IPR010310,NCBI_GP:CAC31562.1;Name=CAC31562.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49945 (EMBL:U15180) (100 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 100 aa overlap. Also similar to many Mycobacterium tuberculosis proteins with undefined function e.g. RV1197 TR:O05299 (EMBL:Z93777) (98 aa)%3B Fasta score E(): 1.7e-20%2C 58.3%25 identity in 96 aa overlap.;gbkey=CDS;gene=ML1181;product=conserved hypothetical protein;protein_id=CAC31562.1;transl_table=11
AL450380.1	EMBL	gene	1381004	1382269	.	-	.	ID=gene-ML1182;Name=ML1182;gbkey=Gene;gene=ML1182;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1381004	1382269	.	-	0	ID=cds-CAC31563.1;Parent=gene-ML1182;Dbxref=InterPro:IPR000030,InterPro:IPR022171,UniProtKB/TrEMBL:Q7AQ89,NCBI_GP:CAC31563.1;Name=CAC31563.1;Note=Identical to the previously sequenced Mycobacterium leprae putative PPE protein TR:Q9Z5K0 (EMBL:AL049191) (421 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 421 aa overlap. Also highly similar to many members of the Mycobacterium tuberculosis PPE-family of proteins e.g. Rv2892c SW:YS92_MYCTU (Q10813) (408 aa)%3B Fasta score E(): 1.2e-25%2C 34.0%25 identity in 429 aa overlap. Contains Pfam match to entry PF00823 PPE%2C PPE family.;gbkey=CDS;gene=ML1182;product=PPE-family protein;protein_id=CAC31563.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1381781	1382254	.	-	.	ID=id-ML1182;Note=Pfam match to entry PF00823 PPE%2C PPE family%2C score 312.90%2C E-value 3.8e-90;gbkey=misc_feature;gene=ML1182
AL450380.1	EMBL	repeat_region	1381663	1381722	.	+	.	ID=id-AL450380.1:1381663..1381722;Note=5 copies of 12 bp tandem repeat%2C Consensus CCTCAACAACCT;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	1381770	1382838	.	-	.	ID=id-AL450380.1:1381770..1382838;Note=100 %25 identical to bases 1220160..1221229 (with a 1 bp gap);gbkey=repeat_region
AL450380.1	EMBL	gene	1382326	1382625	.	-	.	ID=gene-ML1183;Name=ML1183;gbkey=Gene;gene=ML1183;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1382326	1382625	.	-	0	ID=cds-CAC31564.1;Parent=gene-ML1183;Dbxref=InterPro:IPR000084,UniProtKB/TrEMBL:Q7AQ88,NCBI_GP:CAC31564.1;Name=CAC31564.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49943 (EMBL:AL049191) (99 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 99 aa overlap. Also highly similar to many Mycobacterium tuberculosis hypothetical proteins e.g. TR:O05297 (EMBL:Z93777) (99 aa)%3B Fasta score E(): 1.3e-12%2C 48.9%25 identity in 92 aa overlap and the N-terminus of several PGRS-family proteins%2C also from M. tuberculosis e.g. RV0742 TR:O53805 (EMBL:AL021958) (175 aa)%3B Fasta score E(): 8.8e-09%2C 39.6%25 identity in 96 aa overlap. Contains Pfam match to entry PF00934 PE%2C PE family.;gbkey=CDS;gene=ML1183;product=conserved hypothetical protein;protein_id=CAC31564.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1382341	1382622	.	-	.	ID=id-ML1183;Note=Pfam match to entry PF00934 PE%2C PE family%2C score 155.60%2C E-value 8.6e-43;gbkey=misc_feature;gene=ML1183
AL450380.1	EMBL	pseudogene	1383635	1384713	.	-	.	ID=gene-ML1184;Name=ML1184;gbkey=Gene;gene=ML1184;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1383635	1384713	.	-	0	ID=cds-ML1184;Parent=gene-ML1184;Note=Possible pseudogene of M. tuberculosis orthologue adhD (Best blastx score 217);gbkey=CDS;gene=ML1184;product=zinc-containing alcohol dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1384839	1385327	.	-	.	ID=gene-ML1185;Name=ML1185;gbkey=Gene;gene=ML1185;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1384839	1385327	.	-	0	ID=cds-ML1185;Parent=gene-ML1185;Note=Possible pseudogene of M. tuberculosis orthologue Rv1777 (Best blastx score 111);gbkey=CDS;gene=ML1185;product=probable cytochrome p450 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1386776	1387078	.	-	.	ID=gene-ML1186;Name=ML1186;gbkey=Gene;gene=ML1186;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1386776	1387078	.	-	0	ID=cds-CAC31567.1;Parent=gene-ML1186;Dbxref=UniProtKB/TrEMBL:Q9CC71,NCBI_GP:CAC31567.1;Name=CAC31567.1;Note=unknown function.;gbkey=CDS;gene=ML1186;product=hypothetical protein;protein_id=CAC31567.1;transl_table=11
AL450380.1	EMBL	pseudogene	1387515	1388406	.	-	.	ID=gene-ML1187;Name=ML1187;gbkey=Gene;gene=ML1187;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1387515	1388406	.	-	0	ID=cds-ML1187;Parent=gene-ML1187;Note=Possible pseudogene of M. tuberculosis orthologue fadD8 (Best blastx score 98);gbkey=CDS;gene=ML1187;product=acyl-CoA synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1390595	1390855	.	-	.	ID=gene-ML1188;Name=ML1188;gbkey=Gene;gene=ML1188;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1390595	1390855	.	-	0	ID=cds-CAC31569.1;Parent=gene-ML1188;Dbxref=GOA:Q9CC70,InterPro:IPR000524,InterPro:IPR011991,UniProtKB/TrEMBL:Q9CC70,NCBI_GP:CAC31569.1;Name=CAC31569.1;Note=unknown function.;gbkey=CDS;gene=ML1188;product=hypothetical protein;protein_id=CAC31569.1;transl_table=11
AL450380.1	EMBL	gene	1392493	1392876	.	-	.	ID=gene-ML1189;Name=ML1189;gbkey=Gene;gene=ML1189;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1392493	1392876	.	-	0	ID=cds-CAC31570.1;Parent=gene-ML1189;Dbxref=GOA:Q7AQ87,InterPro:IPR001128,UniProtKB/TrEMBL:Q7AQ87,NCBI_GP:CAC31570.1;Name=CAC31570.1;Note=unknown function%2C identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q9X7D8.;gbkey=CDS;gene=ML1189;product=hypothetical protein;protein_id=CAC31570.1;transl_table=11
AL450380.1	EMBL	gene	1395291	1396010	.	+	.	ID=gene-ML1190;Name=ML1190;gbkey=Gene;gene=ML1190;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1395291	1396010	.	+	0	ID=cds-CAC31571.1;Parent=gene-ML1190;Dbxref=GOA:Q7AQ86,InterPro:IPR006311,InterPro:IPR013781,InterPro:IPR015020,InterPro:IPR017853,UniProtKB/TrEMBL:Q7AQ86,NCBI_GP:CAC31571.1;Name=CAC31571.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q9X7E1 (EMBL:AL049478) (239 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 239 aa overlap. Also highly similar to Mycobacterium tuberculosis Rv2525c TR:P95028 (EMBL:Z83863) (240 aa)%3B Fasta score E(): 0%2C 82.2%25 identity in 241 aa overlap.;gbkey=CDS;gene=ML1190;product=conserved hypothetical protein;protein_id=CAC31571.1;transl_table=11
AL450380.1	EMBL	gene	1396622	1405852	.	+	.	ID=gene-fas;Name=fas;gbkey=Gene;gene=fas;gene_biotype=protein_coding;gene_synonym=ML1191
AL450380.1	EMBL	CDS	1396622	1405852	.	+	0	ID=cds-CAC31572.1;Parent=gene-fas;Dbxref=GOA:Q7AQ85,InterPro:IPR001227,InterPro:IPR002539,InterPro:IPR003965,InterPro:IPR013565,InterPro:IPR013785,InterPro:IPR014030,InterPro:IPR014031,InterPro:IPR014043,InterPro:IPR016035,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR016040,InterPro:IPR018201,InterPro:IPR029069,UniProtKB/TrEMBL:Q7AQ85,NCBI_GP:CAC31572.1;Name=CAC31572.1;Note=Identical to the previously sequenced Mycobacterium leprae putative type I fatty acid synthase TR:Q9X7E2 (EMBL:AL049478) (3076 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 3076 aa overlap. Also highly similar to many other fatty acid synthases including: Mycobacterium tuberculosis Rv2524c TR:P95029 (EMBL:Z83863) (3069 aa)%3B Fasta score E(): 0%2C 85.8%25 identity in 3081 aa overlap and Corynebacterium ammoniagenes fatty-acid synthase (EC 2.3.1.85) TR:Q59497 (EMBL:X87822) (3063 aa)%3B Fasta score E(): 0%2C 44.3%25 identity in 3106 aa overlap. Contains Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase. Contains Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain. Contains Pfam match to entry PF01575 MaoC_dehydratas%2C MaoC like domain. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Contains PS00606 Beta-ketoacyl synthases active site.;gbkey=CDS;gene=fas;product=fatty acid synthase;protein_id=CAC31572.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1400222	1400590	.	+	.	ID=id-fas;Note=Pfam match to entry PF01575 MaoC_dehydratas%2C MaoC like domain%2C score 136.40%2C E-value 5e-37;gbkey=misc_feature;gene=fas
AL450380.1	EMBL	sequence_feature	1400621	1401502	.	+	.	ID=id-fas-2;Note=Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain%2C score 19.00%2C E-value 4.2e-11;gbkey=misc_feature;gene=fas
AL450380.1	EMBL	sequence_feature	1404284	1405615	.	+	.	ID=id-fas-3;Note=Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase%2C score -125.00%2C E-value 3.1e-06;gbkey=misc_feature;gene=fas
AL450380.1	EMBL	sequence_feature	1404773	1404823	.	+	.	ID=id-fas-4;Note=PS00606 Beta-ketoacyl synthases active site;gbkey=misc_feature;gene=fas
AL450380.1	EMBL	gene	1405881	1406273	.	+	.	ID=gene-acpS;Name=acpS;gbkey=Gene;gene=acpS;gene_biotype=protein_coding;gene_synonym=ML1192
AL450380.1	EMBL	CDS	1405881	1406273	.	+	0	ID=cds-CAC31573.1;Parent=gene-acpS;Dbxref=GOA:Q9X7E3,InterPro:IPR002582,InterPro:IPR004568,InterPro:IPR008278,NCBI_GP:CAC31573.1;Name=CAC31573.1;Note=Identical to the previously sequenced Mycobacterium leprae holo-[acyl-carrier protein] synthase (ACP)(EC 2.7.8.7) SW:ACPS_MYCLE (Q9X7E3) (130 aa)%3B Fasta score E(): 0%2C 99.2%25 identity in 130 aa overlap. Also highly similar to ACPs from Mycobacterium tuberculosis SW:ACPS_MYCTU (O53228) (130 aa)%3B Fasta score E(): 0%2C 86.7%25 identity in 128 aa overlap and Escherichia coli SW:ACPS_ECOLI (P24224) (125 aa)%3B Fasta score E(): 0.00025%2C 35.1%25 identity in 131 aa overlap. Contains Pfam match to entry PF01648 ACPS%2C 4'-phosphopantetheinyl transferase superfamily.;gbkey=CDS;gene=acpS;product=holo-[acyl-carrier protein] synthase;protein_id=CAC31573.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1405893	1406252	.	+	.	ID=id-acpS;Note=Pfam match to entry PF01648 ACPS%2C 4'-phosphopantetheinyl transferase superfamily%2C score 126.70%2C E-value 4.3e-34;gbkey=misc_feature;gene=acpS
AL450380.1	EMBL	gene	1406363	1407691	.	+	.	ID=gene-ML1193;Name=ML1193;gbkey=Gene;gene=ML1193;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1406363	1407691	.	+	0	ID=cds-CAC31574.1;Parent=gene-ML1193;Dbxref=GOA:Q7AQ84,InterPro:IPR002933,InterPro:IPR011650,UniProtKB/TrEMBL:Q7AQ84,NCBI_GP:CAC31574.1;Name=CAC31574.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q9X7E4 (EMBL:AL049478) (442 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 442 aa overlap and highly similar to Mycobacterium tuberculosis hypothetical protein Rv2522c TR:O53227 (EMBL:AL021185) (470 aa)%3B Fasta score E(): 0%2C 86.4%25 identity in 440 aa overlap. Contains Pfam match to entry PF01546 Peptidase_M20%2C Peptidase family M20/M25/M40.;gbkey=CDS;gene=ML1193;product=conserved hypothetical protein;protein_id=CAC31574.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1406417	1407523	.	+	.	ID=id-ML1193;Note=Pfam match to entry PF01546 Peptidase_M20%2C Peptidase family M20/M25/M40%2C score 193.20%2C E-value 1.8e-54;gbkey=misc_feature;gene=ML1193
AL450380.1	EMBL	repeat_region	1407672	1408507	.	+	.	ID=id-AL450380.1:1407672..1408507;Note=Dispersed repeat%2C RLEP%2C copy 14;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	1408807	1410072	.	-	.	ID=gene-ML1194;Name=ML1194;gbkey=Gene;gene=ML1194;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1408807	1410072	.	-	0	ID=cds-ML1194;Parent=gene-ML1194;Note=Possible pseudogene of M. tuberculosis orthologue papA3 (Best blastx score 212);gbkey=CDS;gene=ML1194;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1410776	1410780	.	+	.	ID=id-AL450380.1:1410776..1410780;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1410785	1413964	.	+	.	ID=gene-ileS;Name=ileS;gbkey=Gene;gene=ileS;gene_biotype=protein_coding;gene_synonym=ML1195
AL450380.1	EMBL	CDS	1410785	1413964	.	+	0	ID=cds-CAC31576.1;Parent=gene-ileS;Dbxref=GOA:Q9X7E5,InterPro:IPR001412,InterPro:IPR002300,InterPro:IPR002301,InterPro:IPR009008,InterPro:IPR009080,InterPro:IPR013155,InterPro:IPR014729,InterPro:IPR023586,NCBI_GP:CAC31576.1;Name=CAC31576.1;Note=Identical to the previously sequenced Mycobacterium leprae isoleucyl-tRNA synthetase (EC 6.1.1.5) SW:SYI_MYCLE (Q9X7E5) (1059 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 1059 aa overlap. Also highly similar to many Prokaryotic and Eukaryotic tRNA synthases e.g. Mycobacterium tuberculosis RV1536 SW:SYI_MYCTU (Q10765) (1041 aa)%3B Fasta score E(): 0%2C 84.4%25 identity in 1059 aa overlap and Schizosaccharomyces pombe SW:SYIC_SCHPO (O13651) (1064 aa)%3B Fasta score E(): 0%2C 39.5%25 identity in 1041 aa overlap. Contains Pfam match to entry PF00133 tRNA-synt_1%2C tRNA synthetases class I (I%2C L%2C M and V). Contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature.%3B~Similar to ML1472 (valyl-tRNA synthase);gbkey=CDS;gene=ileS;product=isoleucyl-tRNA synthase;protein_id=CAC31576.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1410866	1412986	.	+	.	ID=id-ileS;Note=Pfam match to entry PF00133 tRNA-synt_1%2C tRNA synthetases class I (I%2C L%2C M and V)%2C score 690.10%2C E-value 1.1e-203;gbkey=misc_feature;gene=ileS
AL450380.1	EMBL	sequence_feature	1410959	1410994	.	+	.	ID=id-ileS-2;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature;gbkey=misc_feature;gene=ileS
AL450380.1	EMBL	pseudogene	1414046	1414552	.	-	.	ID=gene-ML1196;Name=ML1196;gbkey=Gene;gene=ML1196;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1414046	1414552	.	-	0	ID=cds-ML1196;Parent=gene-ML1196;Note=Possible pseudogene of M. tuberculosis orthologue Rv3832c (Best blastx score 159);gbkey=CDS;gene=ML1196;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1414678	1416054	.	+	.	ID=gene-dinX;Name=dinX;gbkey=Gene;gene=dinX;gene_biotype=pseudogene;gene_synonym=ML1197;pseudo=true
AL450380.1	EMBL	CDS	1414678	1416054	.	+	0	ID=cds-dinX;Parent=gene-dinX;Note=Possible pseudogene of M. tuberculosis orthologue dinX (Best blastx score 489);gbkey=CDS;gene=dinX;product=probable DNA-damage-inducible protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1416022	1416954	.	-	.	ID=gene-ansA;Name=ansA;gbkey=Gene;gene=ansA;gene_biotype=protein_coding;gene_synonym=ML1198
AL450380.1	EMBL	CDS	1416022	1416954	.	-	0	ID=cds-CAC31579.1;Parent=gene-ansA;Dbxref=GOA:Q9X7E6,InterPro:IPR006034,InterPro:IPR020827,InterPro:IPR027473,InterPro:IPR027474,InterPro:IPR027475,NCBI_GP:CAC31579.1;Name=CAC31579.1;Note=Identical to the previously sequenced Mycobacterium leprae probable L-asparaginase (EC 3.5.1.1) SW:ASPG_MYCLE (Q9X7E6) (310 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 310 aa overlap. Also highly similar to many other L-asparaginases e.g. Mycobacterium tuberculosis Rv1538c SW:ASPG_MYCTU (Q10759) (315 aa)%3B Fasta score E(): 0%2C 72.4%25 identity in 315 aa overlap and Saccharomyces cerevisiae SW:ASG1_YEAST (P38986) (381 aa)%3B Fasta score E(): 6.4e-12%2C 27.5%25 identity in 327 aa overlap. Contains Pfam match to entry PF00710 Asparaginase%2C Asparaginase. Contains PS00917 Asparaginase / glutaminase active site signature 2. Contains PS00144 Asparaginase / glutaminase active site signature 1.;gbkey=CDS;gene=ansA;product=L-asparaginase/L-glutaminase;protein_id=CAC31579.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1416031	1416942	.	-	.	ID=id-ansA;Note=Pfam match to entry PF00710 Asparaginase%2C Asparaginase%2C score 321.20%2C E-value 1.2e-92;gbkey=misc_feature;gene=ansA
AL450380.1	EMBL	sequence_feature	1416700	1416732	.	-	.	ID=id-ansA-2;Note=PS00917 Asparaginase / glutaminase active site signature 2;gbkey=misc_feature;gene=ansA
AL450380.1	EMBL	sequence_feature	1416913	1416939	.	-	.	ID=id-ansA-3;Note=PS00144 Asparaginase / glutaminase active site signature 1;gbkey=misc_feature;gene=ansA
AL450380.1	EMBL	gene	1417029	1417634	.	+	.	ID=gene-lspA;Name=lspA;gbkey=Gene;gene=lspA;gene_biotype=protein_coding;gene_synonym=ML1199
AL450380.1	EMBL	CDS	1417029	1417634	.	+	0	ID=cds-CAC31580.1;Parent=gene-lspA;Dbxref=GOA:Q9X7E7,InterPro:IPR001872,NCBI_GP:CAC31580.1;Name=CAC31580.1;Note=Identical to the previously sequenced Mycobacterium leprae lipoprotein signal peptidase (EC 3.4.23.36) TR:Q9X7E7 (EMBL:AL049478) (201 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 201 aa overlap. Also highly similar to lipoprotein signal peptidases from: Mycobacterium tuberculosis SW:LSPA_MYCTU (Q10764) (202 aa)%3B Fasta score E(): 0%2C 80.6%25 identity in 201 aa overlap and Bacillus subtilis SW:LSPA_BACSU (Q45479) (154 aa)%3B Fasta score E(): 1.2e-12%2C 36.8%25 identity in 163 aa overlap. Contains Pfam match to entry PF01252 Peptidase_A8%2C Signal peptidase (SPase) II. Contains PS00855 Signal peptidases II signature.;gbkey=CDS;gene=lspA;product=lipoprotein signal peptidase;protein_id=CAC31580.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1417122	1417577	.	+	.	ID=id-lspA;Note=Pfam match to entry PF01252 Peptidase_A8%2C Signal peptidase (SPase) II%2C score 238.50%2C E-value 9.4e-68;gbkey=misc_feature;gene=lspA
AL450380.1	EMBL	sequence_feature	1417395	1417427	.	+	.	ID=id-lspA-2;Note=PS00855 Signal peptidases II signature;gbkey=misc_feature;gene=lspA
AL450380.1	EMBL	gene	1417753	1418679	.	+	.	ID=gene-ML1200;Name=ML1200;gbkey=Gene;gene=ML1200;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1417753	1418679	.	+	0	ID=cds-CAC31581.1;Parent=gene-ML1200;Dbxref=GOA:Q7AQ83,InterPro:IPR002942,InterPro:IPR006145,InterPro:IPR006224,InterPro:IPR006225,InterPro:IPR020103,UniProtKB/TrEMBL:Q7AQ83,NCBI_GP:CAC31581.1;Name=CAC31581.1;Note=Identical to the previously sequenced Mycobacterium leprae putative pseudouridine synthase TR:Q9X7E8 (EMBL:AL049478) (308 aa)%3B Fasta score E(): 0%2C 99.7%25 identity in 308 aa overlap orthologues of which are known to be responsible for the synthesis pseudouridine from uracil within the 23s rRNA. Also highly similar to several others e.g. Mycobacterium tuberculosis RV1540 SW:Y04P_MYCTU (Q10786) (308 aa)%3B Fasta score E(): 0%2C 88.9%25 identity in 307 aa overlap and Escherichia coli SW:RLUD_ECOLI (P33643) (326 aa)%3B Fasta score E(): 9.8e-23%2C 34.3%25 identity in 312 aa overlap. Contains Pfam match to entry PF00849 PseudoU_synth_2%2C RNA pseudouridylate synthase. Contains PS01129 Rlu family of pseudouridine synthase signature.;gbkey=CDS;gene=ML1200;product=putative pseudouridine synthase;protein_id=CAC31581.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1418017	1418481	.	+	.	ID=id-ML1200;Note=Pfam match to entry PF00849 PseudoU_synth_2%2C RNA pseudouridylate synthase%2C score 208.50%2C E-value 1e-58;gbkey=misc_feature;gene=ML1200
AL450380.1	EMBL	sequence_feature	1418155	1418199	.	+	.	ID=id-ML1200-2;Note=PS01129 Rlu family of pseudouridine synthase signature;gbkey=misc_feature;gene=ML1200
AL450380.1	EMBL	pseudogene	1418699	1419337	.	-	.	ID=gene-ML1201;Name=ML1201;gbkey=Gene;gene=ML1201;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1418699	1419337	.	-	0	ID=cds-ML1201;Parent=gene-ML1201;Note=Possible pseudogene of M. tuberculosis orthologue Rv1597 (Best blastx score 186);gbkey=CDS;gene=ML1201;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1419484	1419928	.	-	.	ID=gene-ML1202;Name=ML1202;gbkey=Gene;gene=ML1202;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1419484	1419928	.	-	0	ID=cds-ML1202;Parent=gene-ML1202;Note=Possible pseudogene of M. tuberculosis orthologue lprI (Best blastx score 128);gbkey=CDS;gene=ML1202;product=lipoprotein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1420019	1420333	.	-	.	ID=gene-glbN;Name=glbN;gbkey=Gene;gene=glbN;gene_biotype=pseudogene;gene_synonym=ML1203;pseudo=true
AL450380.1	EMBL	CDS	1420019	1420333	.	-	0	ID=cds-glbN;Parent=gene-glbN;Note=Possible pseudogene of M. tuberculosis orthologue glbN (Best blastx score 104);gbkey=CDS;gene=glbN;product=hemoglobin-like%2C oxygen carrier (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1420619	1421596	.	+	.	ID=gene-ML1204;Name=ML1204;gbkey=Gene;gene=ML1204;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1420619	1421596	.	+	0	ID=cds-ML1204;Parent=gene-ML1204;Note=Possible pseudogene of M. tuberculosis orthologue Rv1543 (Best blastx score 277);gbkey=CDS;gene=ML1204;product=probable fatty-acyl CoA reductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1421618	1422378	.	+	.	ID=gene-ML1205;Name=ML1205;gbkey=Gene;gene=ML1205;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1421618	1422378	.	+	0	ID=cds-ML1205;Parent=gene-ML1205;Note=Highly similar to Mycobacterium tuberculosis probable ketoacyl reductase Rv1544 TR:Q10782.;gbkey=CDS;gene=ML1205;product=probable ketoacyl reductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1422518	1422940	.	+	.	ID=gene-ML1206;Name=ML1206;gbkey=Gene;gene=ML1206;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1422518	1422940	.	+	0	ID=cds-ML1206;Parent=gene-ML1206;Note=Possible pseudogene of M. tuberculosis orthologue Rv1546 (Best blastx score 213);gbkey=CDS;gene=ML1206;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1423014	1426547	.	+	.	ID=gene-dnaE;Name=dnaE;gbkey=Gene;gene=dnaE;gene_biotype=protein_coding;gene_synonym=ML1207
AL450380.1	EMBL	CDS	1423014	1426547	.	+	0	ID=cds-CAC31588.1;Parent=gene-dnaE;Dbxref=GOA:Q9X7F0,InterPro:IPR003141,InterPro:IPR004013,InterPro:IPR004365,InterPro:IPR004805,InterPro:IPR011708,InterPro:IPR016195,InterPro:IPR029460,NCBI_GP:CAC31588.1;Name=CAC31588.1;Note=Identical to the previously sequenced Mycobacterium leprae putative DNA polymerase III alpha chain TR:Q9X7F0 (EMBL:AL049478) (1177 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 1177 aa overlap. Also highly similar to DNA polymerases from e.g. Mycobacterium tuberculosis Rv1547 SW:DP3A_MYCTU (Q10779) (1184 aa)%3B Fasta score E(): 0%2C 91.2%25 identity in 1176 aa overlap and Escherichia coli DnaE or PolC SW:DP3A_ECOLI (P10443) (1160 aa)%3B Fasta score E(): 0%2C 36.1%25 identity in 1193 aa overlap. Contains Pfam match to entry PF02193 POLIIIAc%2C DNA polymerase alpha chain like domain.;gbkey=CDS;gene=dnaE;product=DNA polymerase III%2C [alpha] subunit;protein_id=CAC31588.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1423032	1423235	.	+	.	ID=id-dnaE;Note=Pfam match to entry PF02193 POLIIIAc%2C DNA polymerase alpha chain like domain%2C score 120.50%2C E-value 3.2e-32;gbkey=misc_feature;gene=dnaE
AL450380.1	EMBL	repeat_region	1426553	1427352	.	+	.	ID=id-AL450380.1:1426553..1427352;Note=Dispersed repeat%2C RLEP%2C copy 15;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	1427776	1428212	.	+	.	ID=gene-ML1208;Name=ML1208;gbkey=Gene;gene=ML1208;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1427776	1428212	.	+	0	ID=cds-ML1208;Parent=gene-ML1208;Note=Possible pseudogene of M. tuberculosis orthologue Rv1558 (Best blastx score 405);gbkey=CDS;gene=ML1208;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	1428085	1428170	.	-	.	ID=id-AL450380.1:1428085..1428170;Note=86 bp repeat%2C 97%25 identical to region 1641317..1641402;gbkey=repeat_region
AL450380.1	EMBL	gene	1428251	1429534	.	+	.	ID=gene-ilvA;Name=ilvA;gbkey=Gene;gene=ilvA;gene_biotype=protein_coding;gene_synonym=ML1209
AL450380.1	EMBL	CDS	1428251	1429534	.	+	0	ID=cds-CAC31590.1;Parent=gene-ilvA;Dbxref=GOA:Q9X7F1,InterPro:IPR000634,InterPro:IPR001721,InterPro:IPR001926,InterPro:IPR011820,NCBI_GP:CAC31590.1;Name=CAC31590.1;Note=Identical to the previously sequenced Mycobacterium leprae probable threonine threonine deaminase (EC 4.2.1.16) TR:Q9X7F1 (EMBL:AL04947) (427 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 427 aa overlap. Highly similar to many other threonine deaminases including: Mycobacterium tuberculosis Rv1559 SW:THD1_MYCT and Corynebacterium glutamicum SW:THD1_CORGL (Q04513) (436 aa)%3B Fasta score E(): 0%2C 60.7%25 identity in 415 aa overlap. Contains Pfam match to entry PF00585 Thr_dehydrat_C%2C C-terminal domain of Threonine dehydratase. Contains Pfam match to entry PF00291 S_T_dehydratase%2C Pyridoxal-phosphate dependent enzyme. Contains PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site.;gbkey=CDS;gene=ilvA;product=threonine deaminase;protein_id=CAC31590.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1428326	1429213	.	+	.	ID=id-ilvA;Note=Pfam match to entry PF00291 S_T_dehydratase%2C Pyridoxal-phosphate dependent enzyme%2C score 304.70%2C E-value 1.1e-87;gbkey=misc_feature;gene=ilvA
AL450380.1	EMBL	sequence_feature	1428410	1428451	.	+	.	ID=id-ilvA-2;Note=PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site;gbkey=misc_feature;gene=ilvA
AL450380.1	EMBL	sequence_feature	1429247	1429525	.	+	.	ID=id-ilvA-3;Note=Pfam match to entry PF00585 Thr_dehydrat_C%2C C-terminal domain of Threonine dehydratase%2C score 140.60%2C E-value 2.8e-38;gbkey=misc_feature;gene=ilvA
AL450380.1	EMBL	gene	1431094	1431279	.	+	.	ID=gene-ML1210;Name=ML1210;gbkey=Gene;gene=ML1210;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1431094	1431279	.	+	0	ID=cds-CAC31591.1;Parent=gene-ML1210;Dbxref=UniProtKB/TrEMBL:Q9CC69,NCBI_GP:CAC31591.1;Name=CAC31591.1;Note=unknown function.;gbkey=CDS;gene=ML1210;product=hypothetical protein;protein_id=CAC31591.1;transl_table=11
AL450380.1	EMBL	pseudogene	1431580	1432437	.	-	.	ID=gene-glgY;Name=glgY;gbkey=Gene;gene=glgY;gene_biotype=pseudogene;gene_synonym=ML1211;pseudo=true
AL450380.1	EMBL	CDS	1431580	1432437	.	-	0	ID=cds-glgY;Parent=gene-glgY;Note=Possible pseudogene of M. tuberculosis orthologue glgY (Best blastx score 368);gbkey=CDS;gene=glgY;product=putative [alpha]-amylase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1432447	1434635	.	-	.	ID=gene-glgX;Name=glgX;gbkey=Gene;gene=glgX;gene_biotype=pseudogene;gene_synonym=ML1212;pseudo=true
AL450380.1	EMBL	CDS	1432447	1434635	.	-	0	ID=cds-glgX;Parent=gene-glgX;Note=Possible pseudogene of M. tuberculosis orthologue glgX (Best blastx score 387);gbkey=CDS;gene=glgX;product=probable glycogen debranching enzyme (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1434679	1436880	.	-	.	ID=gene-ML1213;Name=ML1213;gbkey=Gene;gene=ML1213;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1434679	1436880	.	-	0	ID=cds-CAC31594.1;Parent=gene-ML1213;Dbxref=GOA:Q9CC68,InterPro:IPR002656,UniProtKB/TrEMBL:Q9CC68,NCBI_GP:CAC31594.1;Name=CAC31594.1;Note=Previously sequenced Mycobacterium leprae putative membrane protein (fragment) TR:Q9X7F3 (EMBL:AL049478) (274 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 274 aa overlap. Also similar to a number of Prokaryotic and Eukaryotic proteins of undefined function including: Mycobacterium tuberculosis Rv1565c TR:O06625 (EMBL:Z95586) (729 aa)%3B Fasta score E(): 0%2C 76.5%25 identity in 729 aa overlap and Caenorhabditis elegans TR:O62230 (EMBL:Z81528) (698 aa)%3B Fasta score E(): 5.2e-09%2C 24.8%25 identity in 646 aa overlap. Contains multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1213;product=conserved membrane protein;protein_id=CAC31594.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1436882	1436888	.	-	.	ID=id-AL450380.1:1436882..1436888;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1437010	1437648	.	-	.	ID=gene-ML1214;Name=ML1214;gbkey=Gene;gene=ML1214;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1437010	1437648	.	-	0	ID=cds-CAC31595.1;Parent=gene-ML1214;Dbxref=InterPro:IPR000064,UniProtKB/TrEMBL:Q9CC67,NCBI_GP:CAC31595.1;Name=CAC31595.1;Note=Previously sequenced Mycobacterium leprae TR:Q49634 (EMBL:U00010) (246 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 206 aa overlap. This predicted product of this CDS is similar to several including a portion of Listeria monocytogenes SW:P60_LISMO (P21171) (484 aa)%3B Fasta score E(): 0.0013%2C 29.7%25 identity in 148 aa overlap invasion-associated protein P60 and several other proteins of undefined function e.g. Mycobacterium tuberculosis Rv1566c TR:O06624 (EMBL:Z95586) (230 aa)%3B Fasta score E(): 0%2C 69.4%25 identity in 209 aa overlap. Contains a possible N-terminal signal sequence. Contains Pfam match to entry PF00877 NLPC_P60%2C NLP/P60 family.;gbkey=CDS;gene=ML1214;product=putative secreted p60-family protein;protein_id=CAC31595.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1437154	1437513	.	-	.	ID=id-ML1214;Note=Pfam match to entry PF00877 NLPC_P60%2C NLP/P60 family%2C score 168.30%2C E-value 1.2e-46;gbkey=misc_feature;gene=ML1214
AL450380.1	EMBL	pseudogene	1438001	1438254	.	-	.	ID=gene-ML1215;Name=ML1215;gbkey=Gene;gene=ML1215;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1438001	1438254	.	-	0	ID=cds-ML1215;Parent=gene-ML1215;Note=Possible pseudogene of M. tuberculosis orthologue Rv1567c (Best blastx score 76);gbkey=CDS;gene=ML1215;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1438597	1439907	.	+	.	ID=gene-bioA;Name=bioA;gbkey=Gene;gene=bioA;gene_biotype=protein_coding;gene_synonym=ML1216
AL450380.1	EMBL	CDS	1438597	1439907	.	+	0	ID=cds-CAC31597.1;Parent=gene-bioA;Dbxref=GOA:P45488,InterPro:IPR005814,InterPro:IPR005815,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,NCBI_GP:CAC31597.1;Name=CAC31597.1;Note=Identical to the previously sequenced Mycobacterium leprae adenosylmethionine-8-amino-7-oxononanoate (EC 2.6.1.62) SW:BIOA_MYCLE (P45488) (436 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 436 aa overlap. Also highly similar to other proteins which have been shown to be involved in the biosynthesis of biotin e.g. Escherichia coli SW:BIOA_ECOLI (P12995) (429 aa)%3B Fasta score E(): 0%2C 50.0%25 identity in 418 aa overlap BioA and Mycobacterium tuberculosis Rv1568 SW:BIOA_MYCTU (O06622) (437 aa)%3B Fasta score E(): 0%2C 85.1%25 identity in 436 aa overlap%2C BioA. Contains Pfam match to entry PF00202 aminotran_3%2C Aminotransferases class-III pyridoxal-phosphate. Contains PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.;gbkey=CDS;gene=bioA;product=adenosylmethionine-8-amino-7-oxononanoate aminotransferase;protein_id=CAC31597.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1438729	1439838	.	+	.	ID=id-bioA;Note=Pfam match to entry PF00202 aminotran_3%2C Aminotransferases class-III pyridoxal-phosphate%2C score 444.00%2C E-value 7e-154;gbkey=misc_feature;gene=bioA
AL450380.1	EMBL	sequence_feature	1439353	1439466	.	+	.	ID=id-bioA-2;Note=PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site;gbkey=misc_feature;gene=bioA
AL450380.1	EMBL	gene	1439914	1441071	.	+	.	ID=gene-bioF;Name=bioF;gbkey=Gene;gene=bioF;gene_biotype=protein_coding;gene_synonym=ML1217
AL450380.1	EMBL	CDS	1439914	1441071	.	+	0	ID=cds-CAC31598.1;Parent=gene-bioF;Dbxref=GOA:P45487,InterPro:IPR001917,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,NCBI_GP:CAC31598.1;Name=CAC31598.1;Note=Identical to the previously sequenced Mycobacterium leprae 8-amino-7-oxononanoate synthase (EC 2.3.1.47) SW:BIOF_MYCLE (P45487) (385 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 385 aa overlap. Also highly similar to many othes e.g. Escherichia coli SW:BIOF_ECOLI (P12998) (384 aa)%3B Fasta score E(): 0%2C 36.9%25 identity in 379 aa overlap%2C involved in biotin biosynthesis%2C and Mycobacterium tuberculosis Rv1569 SW:BIOF_MYCTU (O06621) (386 aa)%3B Fasta score E(): 0%2C 80.1%25 identity in 381 aa overlap. Contains Pfam match to entry PF00222 aminotran_2%2C Aminotransferases class-II. Contains PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site.;gbkey=CDS;gene=bioF;product=8-amino-7-oxononanoate synthase;protein_id=CAC31598.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1440145	1440975	.	+	.	ID=id-bioF;Note=Pfam match to entry PF00222 aminotran_2%2C Aminotransferases class-II%2C score 407.50%2C E-value 1.3e-118;gbkey=misc_feature;gene=bioF
AL450380.1	EMBL	sequence_feature	1440607	1440636	.	+	.	ID=id-bioF-2;Note=PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site;gbkey=misc_feature;gene=bioF
AL450380.1	EMBL	gene	1441068	1441748	.	+	.	ID=gene-bioD;Name=bioD;gbkey=Gene;gene=bioD;gene_biotype=protein_coding;gene_synonym=ML1218
AL450380.1	EMBL	CDS	1441068	1441748	.	+	0	ID=cds-CAC31599.1;Parent=gene-bioD;Dbxref=GOA:P45486,InterPro:IPR004472,InterPro:IPR027417,NCBI_GP:CAC31599.1;Name=CAC31599.1;Note=Identical to the previously sequenced Mycobacterium leprae dethiobiotin synthetase (EC 6.3.3.3) SW:BIOD_MYCLE (P45486) (223 aa)%3B Fasta score E(): 0%2C 99.6%25 identity in 223 aa overlap. Also highly similar to several others involved in biotin biosynthesis e.g. Mycobacterium bovis SW:BIOD_MYCBO (O52587) (226 aa)%3B Fasta score E(): 0%2C 74.2%25 identity in 225 aa overlap and Mycobacterium tuberculosis Rv1570 SW:BIOD_MYCTU (O06620) (226 aa)%3B Fasta score E(): 0%2C 74.2%25 identity in 225 aa overlap.;gbkey=CDS;gene=bioD;product=dethiobiotin synthase;protein_id=CAC31599.1;transl_table=11
AL450380.1	EMBL	pseudogene	1441745	1442257	.	+	.	ID=gene-ML1219;Name=ML1219;gbkey=Gene;gene=ML1219;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1441745	1442257	.	+	0	ID=cds-ML1219;Parent=gene-ML1219;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv1571 TR:O06619;gbkey=CDS;gene=ML1219;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1442489	1442495	.	+	.	ID=id-AL450380.1:1442489..1442495;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1442502	1443539	.	+	.	ID=gene-bioB;Name=bioB;gbkey=Gene;gene=bioB;gene_biotype=protein_coding;gene_synonym=ML1220
AL450380.1	EMBL	CDS	1442502	1443539	.	+	0	ID=cds-CAC31601.1;Parent=gene-bioB;Dbxref=GOA:P46715,InterPro:IPR002684,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR010722,InterPro:IPR013785,InterPro:IPR024177,NCBI_GP:CAC31601.1;Name=CAC31601.1;Note=Identical to the previously sequenced Mycobacterium leprae biotin synthase (EC 2.8.1.6) SW:BIOB_MYCLE (P46715) (345 aa)%3B Fasta score E(): 0%2C 99.1%25 identity in 345 aa overlap. Also highly similar to several others involved in biotin biosynthesis e.g. Escherichia coli SW:BIOB_ECOLI (P12996) (346 aa)%3B Fasta score E(): 0%2C 35.3%25 identity in 309 aa overlap and Mycobacterium tuberculosis TR:BIOB_MYCTU. Contains Pfam match to entry PF01792 Biotin_synth%2C Biotin synthase.;gbkey=CDS;gene=bioB;product=biotin synthase;protein_id=CAC31601.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1442592	1443512	.	+	.	ID=id-bioB;Note=Pfam match to entry PF01792 Biotin_synth%2C Biotin synthase%2C score 689.70%2C E-value 1.4e-203;gbkey=misc_feature;gene=bioB
AL450380.1	EMBL	ribosome_entry_site	1443558	1443562	.	+	.	ID=id-AL450380.1:1443558..1443562;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1443565	1443807	.	+	.	ID=gene-ML1221;Name=ML1221;gbkey=Gene;gene=ML1221;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1443565	1443807	.	+	0	ID=cds-CAC31602.1;Parent=gene-ML1221;Dbxref=NCBI_GP:CAC31602.1;Name=CAC31602.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49616 (EMBL:U00010) (80 aa)%3B Fasta score E(): 0%2C 98.8%25 identity in 80 aa overlap. Also highly similar to Mycobacterium tuberculosis hypothetical protein Rv1590 TR:O06600 (EMBL:Z95586) (79 aa)%3B Fasta score E(): 3.4e-21%2C 67.1%25 identity in 73 aa overlap.;gbkey=CDS;gene=ML1221;product=conserved hypothetical protein;protein_id=CAC31602.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1443792	1443796	.	+	.	ID=id-ML1221;Parent=gene-ML1221;gbkey=regulatory;gene=ML1221;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1443804	1444400	.	+	.	ID=gene-ML1222;Name=ML1222;gbkey=Gene;gene=ML1222;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1443804	1444400	.	+	0	ID=cds-CAC31603.1;Parent=gene-ML1222;Dbxref=GOA:Q49626,InterPro:IPR021213,NCBI_GP:CAC31603.1;Name=CAC31603.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49626 (EMBL:U00010) (198 aa)%3B Fasta score E(): 0%2C 99.5%25 identity in 198 aa overlap. Highly similar to proteins of undefined function also found downstream of BioB orthologues in Mycobacterium tuberculosis Rv1591 TR:O06599 (EMBL:Z95586) (221 aa)%3B Fasta score E(): 0%2C 63.8%25 identity in 188 aa overlap and Mycobacterium bovis BCG TR:O52590 (EMBL:AF041819) (193 aa)%3B Fasta score E(): 0%2C 67.6%25 identity in 170 aa overlap.;gbkey=CDS;gene=ML1222;product=conserved hypothetical protein;protein_id=CAC31603.1;transl_table=11
AL450380.1	EMBL	pseudogene	1444489	1445665	.	-	.	ID=gene-ML1223;Name=ML1223;gbkey=Gene;gene=ML1223;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1444489	1445665	.	-	0	ID=cds-ML1223;Parent=gene-ML1223;Note=Possible pseudogene of M. tuberculosis orthologue Rv1592c (Best blastx score 313);gbkey=CDS;gene=ML1223;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1445947	1446666	.	-	.	ID=gene-ML1224;Name=ML1224;gbkey=Gene;gene=ML1224;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1445947	1446666	.	-	0	ID=cds-CAC31605.1;Parent=gene-ML1224;Dbxref=GOA:Q9CC66,InterPro:IPR000086,InterPro:IPR011991,InterPro:IPR015797,UniProtKB/TrEMBL:Q9CC66,NCBI_GP:CAC31605.1;Name=CAC31605.1;Note=Previously sequenced Mycobacterium leprae hypothetical protein TR:Q49628 (EMBL:U00010) (286 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 233 aa overlap. Also highly similar toseveral other proteins of unproven function including: Mycobacterium tuberculosis hypothetical protein Rv1593c TR:O06597 (EMBL:Z95586) (236 aa)%3B Fasta score E(): 0%2C 85.7%25 identity in 238 aa overlap and Streptomyces coelicolor TR:Q9S233 (EMBL:AL109848) (239 aa)%3B Fasta score E(): 1.1e-19%2C 38.2%25 identity in 191 aa overlap putative DNA hydrolase.;gbkey=CDS;gene=ML1224;product=conserved hypothetical protein;protein_id=CAC31605.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1446703	1446710	.	+	.	ID=id-AL450380.1:1446703..1446710;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1446713	1447771	.	+	.	ID=gene-nadA;Name=nadA;gbkey=Gene;gene=nadA;gene_biotype=protein_coding;gene_synonym=ML1225
AL450380.1	EMBL	CDS	1446713	1447771	.	+	0	ID=cds-CAC31606.1;Parent=gene-nadA;Dbxref=GOA:Q49622,InterPro:IPR003473,InterPro:IPR023066,NCBI_GP:CAC31606.1;Name=CAC31606.1;Note=Identical to the previously sequenced Mycobacterium leprae probable quinolinate synthetase A TR:Q49622 (EMBL:U00010) (368 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 352 aa overlap. Also similar to quinolinate synthetases from Escherichia coli SW:NADA_ECOLI (P11458) (347 aa)%3B Fasta score E(): 2.6e-27%2C 33.3%25 identity in 330 aa overlap and Mycobacterium tuberculosis Rv1594 TR:O06596 (EMBL:Z95586) (349 aa)%3B Fasta score E(): 0%2C 84.4%25 identity in 352 aa overlap.;gbkey=CDS;gene=nadA;product=quinolinate synthase;protein_id=CAC31606.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1447757	1447763	.	+	.	ID=id-nadA;Parent=gene-nadA;gbkey=regulatory;gene=nadA;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1447768	1449351	.	+	.	ID=gene-nadB;Name=nadB;gbkey=Gene;gene=nadB;gene_biotype=protein_coding;gene_synonym=ML1226
AL450380.1	EMBL	CDS	1447768	1449351	.	+	0	ID=cds-CAC31607.1;Parent=gene-nadB;Dbxref=GOA:Q49617,InterPro:IPR003953,InterPro:IPR005288,InterPro:IPR013027,InterPro:IPR015939,InterPro:IPR027477,NCBI_GP:CAC31607.1;Name=CAC31607.1;Note=Previously sequenced Mycobacterium leprae L-aspartate oxidase (EC 1.4.3.16) SW:NADB_MYCLE (Q49617) (424 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 400 aa overlap. Note ML1226 differs in length from that previously sequenced%2C possibly due to a frameshift in the original sequence. Highly similar to several proteins involved in quinolinate biosynthesis e.g. Mycobacterium tuberculosis SW:NADB_MYCTU (O06595) (527 aa)%3B Fasta score E(): 0%2C 76.7%25 identity in 529 aa overlap and Escherichia coli SW:NADB_ECOLI (P10902) (540 aa)%3B Fasta score E(): 6.2e-31%2C 38.8%25 identity in 533 aa overlap. Contains Pfam match to entry PF00890 FAD_binding_2%2C FAD binding domain.;gbkey=CDS;gene=nadB;product=L-aspartate oxidase;protein_id=CAC31607.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1448101	1449036	.	+	.	ID=id-nadB;Note=Pfam match to entry PF00890 FAD_binding_2%2C FAD binding domain%2C score 484.60%2C E-value 7.6e-142;gbkey=misc_feature;gene=nadB
AL450380.1	EMBL	ribosome_entry_site	1449342	1449346	.	+	.	ID=id-nadB-2;Parent=gene-nadB;gbkey=regulatory;gene=nadB;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1449348	1450208	.	+	.	ID=gene-nadC;Name=nadC;gbkey=Gene;gene=nadC;gene_biotype=protein_coding;gene_synonym=ML1227
AL450380.1	EMBL	CDS	1449348	1450208	.	+	0	ID=cds-CAC31608.1;Parent=gene-nadC;Dbxref=GOA:P46714,InterPro:IPR002638,InterPro:IPR004393,InterPro:IPR013785,InterPro:IPR022412,InterPro:IPR027277,NCBI_GP:CAC31608.1;Name=CAC31608.1;Note=Identical to the previously sequenced Mycobacterium leprae nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19)(quinolinate phosphoribosyltransferase [decarboxylating]) SW:NADC_MYCLE (P46714) (284 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 284 aa overlap. Also highly similar several others from to Mycobacterium tuberculosis SW:NADC_MYCTU (O06594) (285 aa)%3B Fasta score E(): 0%2C 79.2%25 identity in 283 aa overlap and Escherichia coli SW:NADC_ECOLI (P30011) (296 aa)%3B Fasta score E(): 2.6e-32%2C 40.4%25 identity in 272 aa overlap. Contains Pfam match to entry PF01729 QRPTase%2C Quinolinate phosphoribosyl transferase.;gbkey=CDS;gene=nadC;product=nicotinate-nucleotide pyrophosphatase [carboxylating];protein_id=CAC31608.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1449417	1450205	.	+	.	ID=id-nadC;Note=Pfam match to entry PF01729 QRPTase%2C Quinolinate phosphoribosyl transferase%2C score 543.70%2C E-value 1.2e-159;gbkey=misc_feature;gene=nadC
AL450380.1	EMBL	stem_loop	1450249	1450302	.	-	.	ID=id-AL450380.1:1450249..1450302;Note=54 bp palindrome;gbkey=stem_loop
AL450380.1	EMBL	repeat_region	1450947	1451715	.	-	.	ID=id-AL450380.1:1450947..1451715;Note=Dispersed repeat%2C RLEP%2C copy 16;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	1453265	1454043	.	+	.	ID=gene-ML1228;Name=ML1228;gbkey=Gene;gene=ML1228;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1453265	1454043	.	+	0	ID=cds-ML1228;Parent=gene-ML1228;Note=Possible pseudogene of M. tuberculosis orthologue lipO (Best blastx score 158);gbkey=CDS;gene=ML1228;product=probable esterase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1454299	1460655	.	+	.	ID=gene-pks3;Name=pks3;gbkey=Gene;gene=pks3;gene_biotype=protein_coding;gene_synonym=ML1229
AL450380.1	EMBL	CDS	1454299	1460655	.	+	0	ID=cds-CAC31610.1;Parent=gene-pks3;Dbxref=GOA:Q49624,InterPro:IPR001227,InterPro:IPR002198,InterPro:IPR009081,InterPro:IPR011032,InterPro:IPR013149,InterPro:IPR013154,InterPro:IPR014030,InterPro:IPR014031,InterPro:IPR014043,InterPro:IPR016035,InterPro:IPR016036,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR016040,InterPro:IPR018201,InterPro:IPR020801,InterPro:IPR020807,InterPro:IPR020842,InterPro:IPR020843,UniProtKB/TrEMBL:Q49624,NCBI_GP:CAC31610.1;Name=CAC31610.1;Note=Identical to many polyketide synthases involved in the biosynthesis of mycocerosyl lipids e.g. Mycobacterium tuberculosis probable mycocerosic acid synthase Rv2940c TR:P96291 (EMBL:Z83858) (2111 aa)%3B Fasta score E(): 0%2C 60.8%25 identity in 2127 aa overlap and Mycobacterium bovis mycocerosic acid synthase SW:MCAS_MYCBO (Q02251) (2110 aa)%3B Fasta score E(): 0%2C 58.8%25 identity in 2127 aa overlap. Contains Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases. Contains Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase. Contains Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain. Contains Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site. Contains PS00606 Beta-ketoacyl synthases active site.%3B~Highly similar to many other M. leprae polyketide synthases ML0101%2C ML0135%2C ML0139%2C ML2353%2C ML2354%2C ML2355%2C ML2356 and ML2357;gbkey=CDS;gene=pks3;product=mycocerosic acid synthase (polyketide synthase);protein_id=CAC31610.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1454323	1455588	.	+	.	ID=id-pks3;Note=Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase%2C score 575.50%2C E-value 3.3e-169;gbkey=misc_feature;gene=pks3
AL450380.1	EMBL	sequence_feature	1454803	1454853	.	+	.	ID=id-pks3-2;Note=PS00606 Beta-ketoacyl synthases active site;gbkey=misc_feature;gene=pks3
AL450380.1	EMBL	sequence_feature	1455901	1456857	.	+	.	ID=id-pks3-3;Note=Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain%2C score 419.90%2C E-value 2.3e-122;gbkey=misc_feature;gene=pks3
AL450380.1	EMBL	sequence_feature	1458598	1459539	.	+	.	ID=id-pks3-4;Note=Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases%2C score -6.40%2C E-value 2.1e-09;gbkey=misc_feature;gene=pks3
AL450380.1	EMBL	sequence_feature	1460410	1460604	.	+	.	ID=id-pks3-5;Note=Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site%2C score 49.80%2C E-value 3.6e-12;gbkey=misc_feature;gene=pks3
AL450380.1	EMBL	ribosome_entry_site	1460724	1460729	.	+	.	ID=id-AL450380.1:1460724..1460729;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1460736	1462151	.	+	.	ID=gene-papA3;Name=papA3;gbkey=Gene;gene=papA3;gene_biotype=protein_coding;gene_synonym=ML1230
AL450380.1	EMBL	CDS	1460736	1462151	.	+	0	ID=cds-CAC31611.1;Parent=gene-papA3;Dbxref=InterPro:IPR001242,UniProtKB/TrEMBL:Q49618,NCBI_GP:CAC31611.1;Name=CAC31611.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49618 (EMBL:U00010) (471 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 471 aa overlap. Also highly similar to Mycobacterium tuberculosis proteins encoded downstream of several polyketide synthases e.g. Rv1182 TR:O50438 (EMBL:AL010186) (472 aa)%3B Fasta score E(): 0%2C 75.8%25 identity in 471 aa overlap.;gbkey=CDS;gene=papA3;product=PKS-associated protein%2C unknown function;protein_id=CAC31611.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1462222	1462226	.	+	.	ID=id-AL450380.1:1462222..1462226;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1462233	1465184	.	+	.	ID=gene-mmpL10;Name=mmpL10;gbkey=Gene;gene=mmpL10;gene_biotype=protein_coding;gene_synonym=ML1231
AL450380.1	EMBL	CDS	1462233	1465184	.	+	0	ID=cds-CAC31612.1;Parent=gene-mmpL10;Dbxref=GOA:Q49619,InterPro:IPR004707,InterPro:IPR004869,NCBI_GP:CAC31612.1;Name=CAC31612.1;Note=Previously sequenced Mycobacterium leprae membrane protein MMPL10 SW:MMLA_MYCLE (Q49619) (1008 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 983 aa overlap. Also highly similar to many MMPL-family Mycobacterium tuberculosis proteins e.g. Rv1183 SW:MMLA_MYCTU (O50439) (1002 aa)%3B Fasta score E(): 0%2C 70.4%25 identity in 978 aa overlap. Contains possible membrane spanning hydrophobic domains.%3B~Similar to ML2378 and ML0137;gbkey=CDS;gene=mmpL10;product=conserved large membrane protein;protein_id=CAC31612.1;transl_table=11
AL450380.1	EMBL	gene	1465612	1466688	.	-	.	ID=gene-ML1232;Name=ML1232;gbkey=Gene;gene=ML1232;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1465612	1466688	.	-	0	ID=cds-CAC31613.1;Parent=gene-ML1232;Dbxref=InterPro:IPR013228,UniProtKB/TrEMBL:Q9CC62,NCBI_GP:CAC31613.1;Name=CAC31613.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49633 (EMBL:U00010) (391 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 358 aa overlap. Also highly similar to Mycobacterium tuberculosis hypothetical protein Rv1184c TR:O50440 (EMBL:AL010186) (359 aa)%3B Fasta score E(): 0%2C 62.7%25 identity in 338 aa overlap. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML1232;product=conserved hypothetical protein;protein_id=CAC31613.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1466155	1466178	.	-	.	ID=id-ML1232;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1232
AL450380.1	EMBL	gene	1466853	1467545	.	-	.	ID=gene-ML1233;Name=ML1233;gbkey=Gene;gene=ML1233;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1466853	1467545	.	-	0	ID=cds-CAC31614.1;Parent=gene-ML1233;Dbxref=InterPro:IPR021315,UniProtKB/TrEMBL:Q49630,NCBI_GP:CAC31614.1;Name=CAC31614.1;Note=Identical to the previously sequenced Mycobacterium leprae hypothetical protein TR:Q49630 (EMBL:U00010) (230 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 230 aa overlap. Also highly similar to Mycobacterium tuberculosis hypothetical protein Rv3821 TR:O07802 (EMBL:Z97188) (237 aa)%3B Fasta score E(): 2.9e-31%2C 46.7%25 identity in 240 aa overlap. Contains multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1233;product=conserved membrane protein;protein_id=CAC31614.1;transl_table=11
AL450380.1	EMBL	gene	1467575	1469314	.	-	.	ID=gene-ML1234;Name=ML1234;gbkey=Gene;gene=ML1234;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1467575	1469314	.	-	0	ID=cds-CAC31615.1;Parent=gene-ML1234;Dbxref=GOA:P54200,InterPro:IPR000873,NCBI_GP:CAC31615.1;Name=CAC31615.1;Note=Highly similar to acyl-CoA synthases from Mycobacterium tuberculosis Rv1185c TR:O50441 (EMBL:AL010186) (578 aa)%3B Fasta score E(): 0%2C 72.4%25 identity in 579 aa overlap and Mycobacterium bovis TR:P71495 (EMBL:U7568) (582 aa)%3B Fasta score E(): 0%2C 63.4%25 identity in 579 aa overlap. Contains Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme.%3B~Similar to ML0100%2C ML0132%2C ML0138%2C ML0243 and ML2358;gbkey=CDS;gene=ML1234;product=possible acyl-CoA synthase;protein_id=CAC31615.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1467839	1469197	.	-	.	ID=id-ML1234;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score -16.10%2C E-value 1.6e-14;gbkey=misc_feature;gene=ML1234
AL450380.1	EMBL	pseudogene	1470762	1473309	.	+	.	ID=gene-pks9;Name=pks9;gbkey=Gene;gene=pks9;gene_biotype=pseudogene;gene_synonym=ML1235;pseudo=true
AL450380.1	EMBL	CDS	1470762	1473309	.	+	0	ID=cds-pks9;Parent=gene-pks9;Note=Possible pseudogene of M. tuberculosis orthologue pks9 (Best blastx score 267);gbkey=CDS;gene=pks9;product=polyketide synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1473955	1474999	.	+	.	ID=gene-pks11;Name=pks11;gbkey=Gene;gene=pks11;gene_biotype=pseudogene;gene_synonym=ML1236;pseudo=true
AL450380.1	EMBL	CDS	1473955	1474999	.	+	0	ID=cds-pks11;Parent=gene-pks11;Note=Possible pseudogene of M. tuberculosis orthologue pks11 (Best blastx score 356);gbkey=CDS;gene=pks11;product=polyketide synthase (chalcone synthase-like) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1474970	1475188	.	-	.	ID=gene-ML1237;Name=ML1237;gbkey=Gene;gene=ML1237;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1474970	1475188	.	-	0	ID=cds-ML1237;Parent=gene-ML1237;Note=Possible pseudogene of M. tuberculosis orthologue Probable cytochrome P450 Rv1666c;gbkey=CDS;gene=ML1237;product=possible cytochrome P450 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1474991	1475161	.	-	.	ID=gene-ML1238;Name=ML1238;gbkey=Gene;gene=ML1238;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1474991	1475161	.	-	0	ID=cds-ML1238;Parent=gene-ML1238;Note=Possible pseudogene of M. tuberculosis orthologue Rv1666c (Best blastx score 147);gbkey=CDS;gene=ML1238;product=Probable cytochrome p450 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1475273	1475714	.	-	.	ID=gene-ML1239;Name=ML1239;gbkey=Gene;gene=ML1239;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1475273	1475714	.	-	0	ID=cds-ML1239;Parent=gene-ML1239;Note=Possible pseudogene of M. tuberculosis orthologue Rv1667c (Best blastx score 184);gbkey=CDS;gene=ML1239;product=Probable ABC transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1475426	1476050	.	-	.	ID=gene-ML1240;Name=ML1240;gbkey=Gene;gene=ML1240;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1475426	1476050	.	-	0	ID=cds-ML1240;Parent=gene-ML1240;Note=Possible pseudogene of M. tuberculosis orthologue Rv1668c (Best blastx score 93);gbkey=CDS;gene=ML1240;product=probable ABC transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1476551	1477435	.	+	.	ID=gene-ML1241;Name=ML1241;gbkey=Gene;gene=ML1241;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1476551	1477435	.	+	0	ID=cds-CAC31622.1;Parent=gene-ML1241;Dbxref=GOA:P53526,InterPro:IPR001753,InterPro:IPR018376,InterPro:IPR029045,NCBI_GP:CAC31622.1;Name=CAC31622.1;Note=Highly similar to Mycobacterium tuberculosis probable enoyl-CoA hydratase Rv1472 EchA12 (EC 4.2.1.17) SW:ECHC_MYCTU (O53163) (285 aa)%3B Fasta score E(): 0%2C 72.0%25 identity in 271 aa overlap and Clostridium acetobutylicum 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) SW:CRT_CLOAB (P52046) (261 aa)%3B Fasta score E(): 5.1e-18%2C 31.1%25 identity in 264 aa overlap. Contains Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family. Contains PS00166 Enoyl-CoA hydratase/isomerase signature.;gbkey=CDS;gene=ML1241;product=possible enoyl-CoA hydratase/isomerase;protein_id=CAC31622.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1476644	1477174	.	+	.	ID=id-ML1241;Note=Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family%2C score 155.70%2C E-value 8e-43;gbkey=misc_feature;gene=ML1241
AL450380.1	EMBL	sequence_feature	1476920	1476982	.	+	.	ID=id-ML1241-2;Note=PS00166 Enoyl-CoA hydratase/isomerase signature;gbkey=misc_feature;gene=ML1241
AL450380.1	EMBL	pseudogene	1478293	1480175	.	+	.	ID=gene-ML1242;Name=ML1242;gbkey=Gene;gene=ML1242;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1478293	1480175	.	+	0	ID=cds-ML1242;Parent=gene-ML1242;Note=Possible pseudogene of M. tuberculosis orthologue Rv0386 (Best blastx score 259);gbkey=CDS;gene=ML1242;product=transcriptional regulator (LuxR/UhpA family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	1480312	1481026	.	+	.	ID=id-AL450380.1:1480312..1481026;Note=LEPRPT%2C copy 3%2C 715 bp region identical to 1254 bp LEPRPT element. Truncated at 5'-end;gbkey=repeat_region
AL450380.1	EMBL	gene	1481448	1481521	.	-	.	ID=gene-argW;Name=argW;gbkey=Gene;gene=argW;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	1481448	1481521	.	-	.	ID=rna-argW;Parent=gene-argW;Note=tRNA Arg anticodon TCT%2C Cove score 69.26;gbkey=tRNA;gene=argW;product=tRNA-Arg
AL450380.1	EMBL	exon	1481448	1481521	.	-	.	ID=exon-argW-1;Parent=rna-argW;Note=tRNA Arg anticodon TCT%2C Cove score 69.26;gbkey=tRNA;gene=argW;product=tRNA-Arg
AL450380.1	EMBL	gene	1482133	1482594	.	+	.	ID=gene-ML1243;Name=ML1243;gbkey=Gene;gene=ML1243;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1482133	1482594	.	+	0	ID=cds-CAC31624.1;Parent=gene-ML1243;Dbxref=UniProtKB/TrEMBL:Q9CC60,NCBI_GP:CAC31624.1;Name=CAC31624.1;Note=function unknown.;gbkey=CDS;gene=ML1243;product=hypothetical protein;protein_id=CAC31624.1;transl_table=11
AL450380.1	EMBL	gene	1482817	1484292	.	+	.	ID=gene-ML1244;Name=ML1244;gbkey=Gene;gene=ML1244;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1482817	1484292	.	+	0	ID=cds-CAC31625.1;Parent=gene-ML1244;Dbxref=GOA:Q7AQ82,InterPro:IPR004255,InterPro:IPR014292,UniProtKB/TrEMBL:Q7AQ82,NCBI_GP:CAC31625.1;Name=CAC31625.1;Note=Highly similar to a family of Mycobacterium tuberculosis proteins e.g. Rv2484c SW:YO84_MYCTU (O53209) (491 aa)%3B Fasta score E(): 0%2C 75.2%25 identity in 483 aa overlap. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1244;product=conserved membrane protein;protein_id=CAC31625.1;transl_table=11
AL450380.1	EMBL	gene	1484289	1486028	.	+	.	ID=gene-ML1245;Name=ML1245;gbkey=Gene;gene=ML1245;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1484289	1486028	.	+	0	ID=cds-CAC31626.1;Parent=gene-ML1245;Dbxref=GOA:Q7AQ81,InterPro:IPR002123,InterPro:IPR006383,InterPro:IPR006385,InterPro:IPR023214,UniProtKB/TrEMBL:Q7AQ81,NCBI_GP:CAC31626.1;Name=CAC31626.1;Note=The N-terminus is similar to several phosphoserine phosphatases e.g. Haemophilus influenzae SW:SERB_HAEIN (P44997) (795 aa)%3B BlastP Expect 9.8 and the C-terminus is similar to many Prokaryotic and Eukaryotic acyltransferases e.g. Salmonella typhimurium 1-acyl-SN-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) SW:PLSC_SALTY (P26974) (245 aa)%3B Fasta score E(): 1.4e-11%2C 35.3%25 identity in 167 aa overlap. Highly similar over entire protein to Mycobacterium tuberculosis putative transferase Rv2483c TR:O53208 (EMBL:AL021246) (580 aa)%3B Fasta score E(): 0%2C 77.1%25 identity in 573 aa overlap. Contains Pfam match to entry PF01553 Acyltransferase%2C Acyltransferase.;gbkey=CDS;gene=ML1245;product=possible transferase;protein_id=CAC31626.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1485228	1485755	.	+	.	ID=id-ML1245;Note=Pfam match to entry PF01553 Acyltransferase%2C Acyltransferase%2C score 131.70%2C E-value 1.3e-35;gbkey=misc_feature;gene=ML1245
AL450380.1	EMBL	gene	1486025	1488352	.	+	.	ID=gene-plsB;Name=plsB;gbkey=Gene;gene=plsB;gene_biotype=protein_coding;gene_synonym=ML1246
AL450380.1	EMBL	CDS	1486025	1488352	.	+	0	ID=cds-CAC31627.1;Parent=gene-plsB;Dbxref=GOA:Q9X7B0,InterPro:IPR002123,InterPro:IPR022284,InterPro:IPR028354,NCBI_GP:CAC31627.1;Name=CAC31627.1;Note=Highly similar to many acyltransferases including: Escherichia coli glycerol-3-phosphate acyltransferase (EC 2.3.1.15) SW:PLSB_ECOLI (P00482) (806 aa)%3B Fasta score E(): 1.5e-27%2C 24.4%25 identity in 693 aa overlap and Mycobacterium tuberculosis putative acyltransferase PlsB2 (RV2482C) SW:PLS2_MYCTU (O53207) (789 aa)%3B Fasta score E(): 0%2C 80.7%25 identity in 783 aa overlap. Contains Pfam match to entry PF01553 Acyltransferase%2C Acyltransferase.;gbkey=CDS;gene=plsB;product=glycerol-3-phosphate acyltransferase;protein_id=CAC31627.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1486781	1487356	.	+	.	ID=id-plsB;Note=Pfam match to entry PF01553 Acyltransferase%2C Acyltransferase%2C score 113.40%2C E-value 4.2e-30;gbkey=misc_feature;gene=plsB
AL450380.1	EMBL	pseudogene	1488719	1489015	.	+	.	ID=gene-ML1247;Name=ML1247;gbkey=Gene;gene=ML1247;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1488719	1489015	.	+	0	ID=cds-ML1247;Parent=gene-ML1247;Note=Possible pseudogene of M. tuberculosis orthologue Rv2478c (Best blastx score 155);gbkey=CDS;gene=ML1247;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1489170	1490840	.	+	.	ID=gene-ML1248;Name=ML1248;gbkey=Gene;gene=ML1248;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1489170	1490840	.	+	0	ID=cds-CAC31629.1;Parent=gene-ML1248;Dbxref=GOA:Q7AQ80,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR022374,InterPro:IPR027417,UniProtKB/TrEMBL:Q7AQ80,NCBI_GP:CAC31629.1;Name=CAC31629.1;Note=Highly similar to many proposed ABC-transporter ATP-binding proteins including:Escherichia coli SW: YJJK_ECOLI and Mycobacterium tuberculosis RV2477C TR:O53204 (EMBL:AL021246) (558 aa)%3B Fasta score E(): 0%2C 92.3%25 identity in 557 aa overlap. Contains 2 Pfam matches to entry PF00005 ABC_tran%2C ABC transporter. Contains 2 x PS00017 ATP/GTP-binding site motif A (P-loop). Contains 2 x PS00211 ABC transporters family signature.;gbkey=CDS;gene=ML1248;product=ABC-transporter protein%2C ATP binding component;protein_id=CAC31629.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1489260	1489865	.	+	.	ID=id-ML1248;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 173.70%2C E-value 2.9e-48;gbkey=misc_feature;gene=ML1248
AL450380.1	EMBL	sequence_feature	1489281	1489304	.	+	.	ID=id-ML1248-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1248
AL450380.1	EMBL	sequence_feature	1489647	1489691	.	+	.	ID=id-ML1248-3;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=ML1248
AL450380.1	EMBL	sequence_feature	1490208	1490714	.	+	.	ID=id-ML1248-4;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 125.60%2C E-value 9.3e-34;gbkey=misc_feature;gene=ML1248
AL450380.1	EMBL	sequence_feature	1490229	1490252	.	+	.	ID=id-ML1248-5;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1248
AL450380.1	EMBL	sequence_feature	1490496	1490540	.	+	.	ID=id-ML1248-6;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=ML1248
AL450380.1	EMBL	gene	1490899	1495767	.	+	.	ID=gene-ML1249;Name=ML1249;gbkey=Gene;gene=ML1249;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1490899	1495767	.	+	0	ID=cds-CAC31630.1;Parent=gene-ML1249;Dbxref=GOA:Q7AQ79,InterPro:IPR007780,InterPro:IPR016040,InterPro:IPR028971,UniProtKB/TrEMBL:Q7AQ79,NCBI_GP:CAC31630.1;Name=CAC31630.1;Note=Similar to several proteins of undefined function including: Mycobacterium tuberculosis RV2476C TR:O53203 (EMBL:AL021246) (1624 aa)%3B Fasta score E(): 0%2C 81.5%25 identity in 1634 aa overlap and Rickettsia prowazekii TR:Q9ZCI2 (EMBL:AJ235273) (1581 aa)%3B Fasta score E(): 0%2C 32.9%25 identity in 1494 aa overlap.;gbkey=CDS;gene=ML1249;product=conserved hypothetical protein;protein_id=CAC31630.1;transl_table=11
AL450380.1	EMBL	pseudogene	1495764	1496155	.	+	.	ID=gene-ML1250;Name=ML1250;gbkey=Gene;gene=ML1250;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1495764	1496155	.	+	0	ID=cds-ML1250;Parent=gene-ML1250;Note=Possible pseudogene of M. tuberculosis orthologue Rv2475c (Best blastx score 137);gbkey=CDS;gene=ML1250;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1496180	1496715	.	+	.	ID=gene-ML1251;Name=ML1251;gbkey=Gene;gene=ML1251;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1496180	1496715	.	+	0	ID=cds-ML1251;Parent=gene-ML1251;Note=Possible pseudogene of M. tuberculosis orthologue Rv2474c (Best blastx score 207);gbkey=CDS;gene=ML1251;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1496785	1498133	.	-	.	ID=gene-ML1252;Name=ML1252;gbkey=Gene;gene=ML1252;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1496785	1498133	.	-	0	ID=cds-ML1252;Parent=gene-ML1252;Note=Possible pseudogene of M. tuberculosis orthologue Rv2471 (Best blastx score 408);gbkey=CDS;gene=ML1252;product=probable maltase [alpha]-glucosidase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1498151	1498537	.	-	.	ID=gene-glbO;Name=glbO;gbkey=Gene;gene=glbO;gene_biotype=protein_coding;gene_synonym=ML1253
AL450380.1	EMBL	CDS	1498151	1498537	.	-	0	ID=cds-CAC31634.1;Parent=gene-glbO;Dbxref=GOA:Q9CC59,InterPro:IPR001486,InterPro:IPR009050,InterPro:IPR012292,InterPro:IPR019795,NCBI_GP:CAC31634.1;Name=CAC31634.1;Note=Highly similar to putative globins from Mycobacterium tuberculosis RV2470 TR:O53197 (EMBL:AL021246) (128 aa)%3B Fasta score E(): 0%2C 88.7%25 identity in 124 aa overlap and Mycobacterium bovis TR:AAF36597 (EMBL:AF213450) (128 aa)%3B Fasta score E(): 0%2C 88.7%25 identity in 124 aa overlap.;gbkey=CDS;gene=glbO;product=hemoglobin-like%2C oxygen carrier;protein_id=CAC31634.1;transl_table=11
AL450380.1	EMBL	gene	1498706	1499353	.	+	.	ID=gene-ML1254;Name=ML1254;gbkey=Gene;gene=ML1254;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1498706	1499353	.	+	0	ID=cds-CAC31635.1;Parent=gene-ML1254;Dbxref=GOA:Q7AQ78,InterPro:IPR002711,InterPro:IPR003615,UniProtKB/TrEMBL:Q7AQ78,NCBI_GP:CAC31635.1;Name=CAC31635.1;Note=Highly similar to several proteins of unknown function including: Mycobacterium tuberculosis RV2469C TR:O53196 (EMBL:AL021246) (222 aa)%3B Fasta score E(): 0%2C 77.9%25 identity in 222 aa overlap and Streptomyces coelicolor TR:CAB71830 (EMBL:AL138662) (178 aa)%3B Fasta score E(): 0%2C 52.8%25 identity in 161 aa overlap. Contains Pfam match to entry PF01844 HNH%2C HNH endonuclease.;gbkey=CDS;gene=ML1254;product=conserved hypothetical protein;protein_id=CAC31635.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1499090	1499224	.	+	.	ID=id-ML1254;Note=Pfam match to entry PF01844 HNH%2C HNH endonuclease%2C score 56.00%2C E-value 8.2e-13;gbkey=misc_feature;gene=ML1254
AL450380.1	EMBL	gene	1499768	1500259	.	+	.	ID=gene-ML1255;Name=ML1255;gbkey=Gene;gene=ML1255;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1499768	1500259	.	+	0	ID=cds-CAC31636.1;Parent=gene-ML1255;Dbxref=UniProtKB/TrEMBL:Q9CC58,NCBI_GP:CAC31636.1;Name=CAC31636.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein RV2468C TR:O53195 (EMBL:AL021246) (167 aa)%3B Fasta score E(): 0%2C 81.2%25 identity in 165 aa overlap.;gbkey=CDS;gene=ML1255;product=conserved hypothetical protein;protein_id=CAC31636.1;transl_table=11
AL450380.1	EMBL	repeat_region	1500246	1501002	.	-	.	ID=id-AL450380.1:1500246..1501002;Note=Dispersed repeat%2C RLEP%2C copy 17;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	1501770	1502183	.	-	.	ID=gene-ML1256;Name=ML1256;gbkey=Gene;gene=ML1256;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1501770	1502183	.	-	0	ID=cds-ML1256;Parent=gene-ML1256;Note=Possible pseudogene of M. tuberculosis orthologue Rv1598c (Best blastx score 161);gbkey=CDS;gene=ML1256;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1502297	1503646	.	+	.	ID=gene-hisD;Name=hisD;gbkey=Gene;gene=hisD;gene_biotype=protein_coding;gene_synonym=ML1257
AL450380.1	EMBL	CDS	1502297	1503646	.	+	0	ID=cds-CAC31638.1;Parent=gene-hisD;Dbxref=GOA:Q9CC57,InterPro:IPR001692,InterPro:IPR012131,InterPro:IPR016161,InterPro:IPR022695,NCBI_GP:CAC31638.1;Name=CAC31638.1;Note=Highly similar to many histidinol dehydrogenases (EC 1.1.1.23) constituting the first stage in the histidine biosynthetic pathway e.g. Mycobacterium tuberculosis RV1599 SW:HISX_MYCTU (Z95586) (438 aa)%3B Fasta score E(): 0%2C 84.8%25 identity in 442 aa overlap and Mycobacterium smegmatis SW:HISX_MYCSM (P28736) (445 aa)%3B Fasta score E(): 0%2C 77.5%25 identity in 449 aa overlap. Contains Pfam match to entry PF00815 Histidinol_dh%2C Histidinol dehydrogenase. Contains PS00611 Histidinol dehydrogenase signature.;gbkey=CDS;gene=hisD;product=histidinol dehydrogenase;protein_id=CAC31638.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1502366	1503640	.	+	.	ID=id-hisD;Note=Pfam match to entry PF00815 Histidinol_dh%2C Histidinol dehydrogenase%2C score 753.30%2C E-value 1e-222;gbkey=misc_feature;gene=hisD
AL450380.1	EMBL	sequence_feature	1503038	1503136	.	+	.	ID=id-hisD-2;Note=PS00611 Histidinol dehydrogenase signature;gbkey=misc_feature;gene=hisD
AL450380.1	EMBL	gene	1503643	1504776	.	+	.	ID=gene-hisC;Name=hisC;gbkey=Gene;gene=hisC;gene_biotype=protein_coding;gene_synonym=ML1258
AL450380.1	EMBL	CDS	1503643	1504776	.	+	0	ID=cds-CAC31639.1;Parent=gene-hisC;Dbxref=GOA:Q9X7B8,InterPro:IPR004839,InterPro:IPR005861,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,NCBI_GP:CAC31639.1;Name=CAC31639.1;Note=Highly similar to many histidinol-phosphate aminotransferases (EC 2.6.1.9) involved in histidine biosynthesis e.g. Mycobacterium tuberculosis RV1600 TR:SW:HIS8_MYCTU (O06591) (380 aa)%3B Fasta score E(): 0%2C 83.6%25 identity in 366 aa overlap and Mycobacterium smegmatis SW:HIS8_MYCSM (P28735) (219 aa)%3B Fasta score E(): 0%2C 77.2%25 identity in 219 aa overlap. Contains Pfam match to entry PF00222 aminotran_2%2C Aminotransferases class-II.;gbkey=CDS;gene=hisC;product=histidinol-phosphate aminotransferase;protein_id=CAC31639.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1503904	1504674	.	+	.	ID=id-hisC;Note=Pfam match to entry PF00222 aminotran_2%2C Aminotransferases class-II%2C score 172.40%2C E-value 7.3e-48;gbkey=misc_feature;gene=hisC
AL450380.1	EMBL	ribosome_entry_site	1504764	1504768	.	+	.	ID=id-hisC-2;Parent=gene-hisC;gbkey=regulatory;gene=hisC;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1504773	1505405	.	+	.	ID=gene-hisB;Name=hisB;gbkey=Gene;gene=hisB;gene_biotype=protein_coding;gene_synonym=ML1259
AL450380.1	EMBL	CDS	1504773	1505405	.	+	0	ID=cds-CAC31640.1;Parent=gene-hisB;Dbxref=GOA:Q9X7B9,InterPro:IPR000807,InterPro:IPR020565,InterPro:IPR020568,NCBI_GP:CAC31640.1;Name=CAC31640.1;Note=Highly similar to many imidazoleglycerol-phosphate dehydratases (EC 4.2.1.19) involved in histidine biosynthesis e.g. from Mycobacterium tuberculosis RV1601 SW:HIS7_MYCTU (O06590) (210 aa)%3B Fasta score E(): 0%2C 84.8%25 identity in 210 aa overlap and Streptomyces coelicolor SW:HIS7_STRCO (P16247) (197 aa)%3B Fasta score E(): 0%2C 56.4%25 identity in 202 aa overlap. Contains 2 Pfam matches to entry PF00475 IGPD%2C Imidazoleglycerol-phosphate dehydratase. Contains PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. Contains PS00954 Imidazoleglycerol-phosphate dehydratase signature 1.;gbkey=CDS;gene=hisB;product=imidazole glycerol-phosphate dehydratase;protein_id=CAC31640.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1504890	1505153	.	+	.	ID=id-hisB;Note=Pfam match to entry PF00475 IGPD%2C Imidazoleglycerol-phosphate dehydratase%2C score 191.10%2C E-value 9.2e-65;gbkey=misc_feature;gene=hisB
AL450380.1	EMBL	sequence_feature	1504980	1505021	.	+	.	ID=id-hisB-2;Note=PS00954 Imidazoleglycerol-phosphate dehydratase signature 1;gbkey=misc_feature;gene=hisB
AL450380.1	EMBL	sequence_feature	1505205	1505345	.	+	.	ID=id-hisB-3;Note=Pfam match to entry PF00475 IGPD%2C Imidazoleglycerol-phosphate dehydratase%2C score 64.70%2C E-value 2.6e-21;gbkey=misc_feature;gene=hisB
AL450380.1	EMBL	sequence_feature	1505286	1505324	.	+	.	ID=id-hisB-4;Note=PS00955 Imidazoleglycerol-phosphate dehydratase signature 2;gbkey=misc_feature;gene=hisB
AL450380.1	EMBL	gene	1505402	1506022	.	+	.	ID=gene-hisH;Name=hisH;gbkey=Gene;gene=hisH;gene_biotype=protein_coding;gene_synonym=ML1260
AL450380.1	EMBL	CDS	1505402	1506022	.	+	0	ID=cds-CAC31641.1;Parent=gene-hisH;Dbxref=GOA:Q9X7C0,InterPro:IPR010139,InterPro:IPR017926,InterPro:IPR029062,NCBI_GP:CAC31641.1;Name=CAC31641.1;Note=Highly similar to many glutamine amidotransferases involved in histidine biosynthesis including: Mycobacterium tuberculosis HisH (RV1602) TR:O06589 (EMBL:Z95586) (206 aa)%3B Fasta score E(): 0%2C 79.4%25 identity in 204 aa overlap and Escherichia coli SW:HIS5_ECOLI (P10375) (196 aa)%3B Fasta score E(): 3.9e-20%2C 41.5%25 identity in 205 aa overlap. Contains Pfam match to entry PF00117 GATase%2C Glutamine amidotransferase class-I. Contains PS00442 Glutamine amidotransferases class-I active site.;gbkey=CDS;gene=hisH;product=glutamine amidotransferase;protein_id=CAC31641.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1505420	1506019	.	+	.	ID=id-hisH;Note=Pfam match to entry PF00117 GATase%2C Glutamine amidotransferase class-I%2C score 146.70%2C E-value 4.2e-40;gbkey=misc_feature;gene=hisH
AL450380.1	EMBL	sequence_feature	1505633	1505668	.	+	.	ID=id-hisH-2;Note=PS00442 Glutamine amidotransferases class-I active site;gbkey=misc_feature;gene=hisH
AL450380.1	EMBL	gene	1506032	1506769	.	+	.	ID=gene-hisA;Name=hisA;gbkey=Gene;gene=hisA;gene_biotype=protein_coding;gene_synonym=ML1261
AL450380.1	EMBL	CDS	1506032	1506769	.	+	0	ID=cds-CAC31642.1;Parent=gene-hisA;Dbxref=GOA:Q9CC56,InterPro:IPR006062,InterPro:IPR010188,InterPro:IPR011060,InterPro:IPR013785,InterPro:IPR023016,NCBI_GP:CAC31642.1;Name=CAC31642.1;Note=Highly similar to many phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerases (EC 5.3.1.16) involved in histidine biosynthesis including: Mycobacterium tuberculosis RV1603 SW:HIS4_MYCT (O0658) (245 aa)%3B Fasta score E(): 0%2C 84.4%25 identity in 244 aa overlap and Streptomyces coelicolor SW:HIS4_STRCO (P16250) (240 aa)%3B Fasta score E(): 0%2C 66.3%25 identity in 240 aa overlap. Contains Pfam match to entry PF00977 His_biosynth%2C Histidine biosynthesis protein.;gbkey=CDS;gene=hisA;product=phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase;protein_id=CAC31642.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1506041	1506760	.	+	.	ID=id-hisA;Note=Pfam match to entry PF00977 His_biosynth%2C Histidine biosynthesis protein%2C score 161.20%2C E-value 1.8e-44;gbkey=misc_feature;gene=hisA
AL450380.1	EMBL	pseudogene	1506792	1507572	.	+	.	ID=gene-impA;Name=impA;gbkey=Gene;gene=impA;gene_biotype=pseudogene;gene_synonym=ML1262;pseudo=true
AL450380.1	EMBL	CDS	1506792	1507572	.	+	0	ID=cds-impA;Parent=gene-impA;Note=Possible pseudogene of M. tuberculosis orthologue impA (Best blastx score 633);gbkey=CDS;gene=impA;product=impA%2C inositol monophosphtase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1507577	1508362	.	+	.	ID=gene-hisF;Name=hisF;gbkey=Gene;gene=hisF;gene_biotype=protein_coding;gene_synonym=ML1263
AL450380.1	EMBL	CDS	1507577	1508362	.	+	0	ID=cds-CAC31644.1;Parent=gene-hisF;Dbxref=GOA:Q9X7C2,InterPro:IPR004651,InterPro:IPR006062,InterPro:IPR011060,InterPro:IPR013785,NCBI_GP:CAC31644.1;Name=CAC31644.1;Note=Highly similar to many cyclases involved in histidine biosynthesis including: Mycobacterium tuberculosis RV1605 SW:HIS6_MYCTU (O53908) (267 aa)%3B Fasta score E(): 0%2C 89.8%25 identity in 256 aa overlap and Bacillus subtilis SW:HIS6_BACSU (O34727) (252 aa)%3B Fasta score E(): 0%2C 53.0%25 identity in 253 aa overlap. Contains Pfam match to entry PF00977 His_biosynth%2C Histidine biosynthesis protein.;gbkey=CDS;gene=hisF;product=cyclase;protein_id=CAC31644.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1507601	1508335	.	+	.	ID=id-hisF;Note=Pfam match to entry PF00977 His_biosynth%2C Histidine biosynthesis protein%2C score 378.50%2C E-value 6.7e-110;gbkey=misc_feature;gene=hisF
AL450380.1	EMBL	gene	1508359	1508706	.	+	.	ID=gene-hisI;Name=hisI;gbkey=Gene;gene=hisI;gene_biotype=protein_coding;gene_synonym=ML1264
AL450380.1	EMBL	CDS	1508359	1508706	.	+	0	ID=cds-CAC31645.1;Parent=gene-hisI;Dbxref=GOA:Q9X7C3,InterPro:IPR002496,InterPro:IPR026660,NCBI_GP:CAC31645.1;Name=CAC31645.1;Note=Highly similar to many phosphoribosyl-AMP cyclohydrolases (EC 3.5.4.19) involved in histidine biosynthesis including: Mycobacterium tuberculosis RV1606 SW:HIS3_MYCTU (O53909) (115 aa)%3B Fasta score E(): 0%2C 84.3%25 identity in 115 aa overlap and Bacillus subtilis SW:HIS2_BACSU (O34912) (209 aa)%3B Fasta score E(): 6.3e-18%2C 50.0%25 identity in 98 aa overlap. Contains Pfam match to entry PF01502 PRA-CH%2C Phosphoribosyl-AMP cyclohydrolase.;gbkey=CDS;gene=hisI;product=phosphoribosyl-AMP 1%2C6 cyclohydrolase;protein_id=CAC31645.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1508455	1508688	.	+	.	ID=id-hisI;Note=Pfam match to entry PF01502 PRA-CH%2C Phosphoribosyl-AMP cyclohydrolase%2C score 166.90%2C E-value 3.3e-46;gbkey=misc_feature;gene=hisI
AL450380.1	EMBL	pseudogene	1508862	1509122	.	-	.	ID=gene-ML1265;Name=ML1265;gbkey=Gene;gene=ML1265;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1508862	1509122	.	-	0	ID=cds-ML1265;Parent=gene-ML1265;Note=Possible pseudogene of M. tuberculosis orthologue Rv2345 (Best blastx score 100);gbkey=CDS;gene=ML1265;product=possible membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1509239	1510181	.	-	.	ID=gene-ML1266;Name=ML1266;gbkey=Gene;gene=ML1266;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1509239	1510181	.	-	0	ID=cds-ML1266;Parent=gene-ML1266;Note=Possible pseudogene of M. tuberculosis orthologue pknF (Best blastx score 141);gbkey=CDS;gene=ML1266;product=serine-threonine protein kinase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1510440	1511534	.	+	.	ID=gene-ML1267;Name=ML1267;gbkey=Gene;gene=ML1267;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1510440	1511534	.	+	0	ID=cds-CAC31648.1;Parent=gene-ML1267;Dbxref=GOA:Q7AQ77,InterPro:IPR004837,UniProtKB/TrEMBL:Q7AQ77,NCBI_GP:CAC31648.1;Name=CAC31648.1;Note=Highly similar to many antiporters e.g. Mycobacterium tuberculosis RV1607 TR:O53910 (EMBL:AL022001) (360 aa)%3B Fasta score E(): 0%2C 77.7%25 identity in 364 aa overlap and Escherichia coli SW:CHAA_ECOLI (P31801) (366 aa)%3B Fasta score E(): 0%2C 36.5%25 identity in 356 aa overlap. Contains multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1267;product=putative antiporter;protein_id=CAC31648.1;transl_table=11
AL450380.1	EMBL	pseudogene	1511581	1512030	.	-	.	ID=gene-ML1268;Name=ML1268;gbkey=Gene;gene=ML1268;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1511581	1512030	.	-	0	ID=cds-ML1268;Parent=gene-ML1268;Note=Function unknown. Similar to proteins found to comigrate with bacterioferritin. Possible pseudogene of M. tuberculosis orthologue bcpB (Best blastx score 328);gbkey=CDS;gene=ML1268;product=conserved hypothetical protein (bacterioferritin comigratory protein) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1512139	1513728	.	+	.	ID=gene-trpE;Name=trpE;gbkey=Gene;gene=trpE;gene_biotype=protein_coding;gene_synonym=ML1269
AL450380.1	EMBL	CDS	1512139	1513728	.	+	0	ID=cds-CAC31650.1;Parent=gene-trpE;Dbxref=GOA:Q9X7C5,InterPro:IPR005256,InterPro:IPR005801,InterPro:IPR006805,InterPro:IPR015890,InterPro:IPR019999,NCBI_GP:CAC31650.1;Name=CAC31650.1;Note=Highly similar to many anthranilate synthase component I family proteins (EC 4.1.3.27) involved in tryptophan biosynthesis e.g. Mycobacterium tuberculosis RV1609 SW:TRPE_MYCTU (O06127) (516 aa)%3B Fasta score E(): 0%2C 88.0%25 identity in 508 aa overlap and Pseudomonas putida SW:TRPE_PSEPU (P20579) (493 aa)%3B Fasta score E(): 0%2C 44.4%25 identity in 504 aa overlap. Contains Pfam match to entry PF00425 chorismate_bind%2C chorismate binding enzyme.;gbkey=CDS;gene=trpE;product=anthranilate synthase component I;protein_id=CAC31650.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1512823	1513629	.	+	.	ID=id-trpE;Note=Pfam match to entry PF00425 chorismate_bind%2C chorismate binding enzyme%2C score 498.40%2C E-value 5.6e-146;gbkey=misc_feature;gene=trpE
AL450380.1	EMBL	ribosome_entry_site	1513718	1513722	.	+	.	ID=id-trpE-2;Parent=gene-trpE;gbkey=regulatory;gene=trpE;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1513725	1514522	.	+	.	ID=gene-ML1270;Name=ML1270;gbkey=Gene;gene=ML1270;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1513725	1514522	.	+	0	ID=cds-CAC31651.1;Parent=gene-ML1270;Dbxref=InterPro:IPR011746,InterPro:IPR019051,UniProtKB/TrEMBL:Q9CC55,NCBI_GP:CAC31651.1;Name=CAC31651.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein RV1610 TR:O06128 (EMBL:Z95554) (235 aa)%3B Fasta score E(): 0%2C 65.8%25 identity in 231 aa overlap. Contains multiple possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF00218 IGPS%2C Indole-3-glycerol phosphate synthases.;gbkey=CDS;gene=ML1270;product=possible conserved membrane protein;protein_id=CAC31651.1;transl_table=11
AL450380.1	EMBL	gene	1514500	1515318	.	+	.	ID=gene-trpC;Name=trpC;gbkey=Gene;gene=trpC;gene_biotype=protein_coding;gene_synonym=ML1271
AL450380.1	EMBL	CDS	1514500	1515318	.	+	0	ID=cds-CAC31652.1;Parent=gene-trpC;Dbxref=GOA:Q9X7C7,InterPro:IPR001468,InterPro:IPR011060,InterPro:IPR013785,InterPro:IPR013798,NCBI_GP:CAC31652.1;Name=CAC31652.1;Note=Highly similar to many indole-3-glycerol phosphate synthases (EC 4.1.1.48) involved in tryptophan biosynthesis e.g. Mycobacterium tuberculosis Rv1611 SW:TRPC_MYCTU (O06129) (272 aa)%3B Fasta score E(): 0%2C 90.8%25 identity in 272 aa overlap and Streptomyces coelicolor SW:TRC1_STRCO (O68814) (269 aa)%3B Fasta score E(): 0%2C 64.1%25 identity in 262 aa overlap. Contains Pfam match to entry PF00218 IGPS%2C Indole-3-glycerol phosphate synthases. Contains PS00614 Indole-3-glycerol phosphate synthase signature.;gbkey=CDS;gene=trpC;product=indole-3-glycerol phosphate synthase;protein_id=CAC31652.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1514515	1515273	.	+	.	ID=id-trpC;Note=Pfam match to entry PF00218 IGPS%2C Indole-3-glycerol phosphate synthases%2C score 339.30%2C E-value 4.3e-98;gbkey=misc_feature;gene=trpC
AL450380.1	EMBL	sequence_feature	1514659	1514703	.	+	.	ID=id-trpC-2;Note=PS00614 Indole-3-glycerol phosphate synthase signature;gbkey=misc_feature;gene=trpC
AL450380.1	EMBL	gene	1515382	1516635	.	+	.	ID=gene-trpB;Name=trpB;gbkey=Gene;gene=trpB;gene_biotype=protein_coding;gene_synonym=ML1272
AL450380.1	EMBL	CDS	1515382	1516635	.	+	0	ID=cds-CAC31653.1;Parent=gene-trpB;Dbxref=GOA:Q9CC54,InterPro:IPR001926,InterPro:IPR006653,InterPro:IPR006654,InterPro:IPR023026,NCBI_GP:CAC31653.1;Name=CAC31653.1;Note=Highly similar to many tryptophan synthases [beta chain] (EC 4.2.1.20) involved in tryptophan biosynthesis e.g. Mycobacterium tuberculosis RV1612 SW:TRPB_MYCTU (O08376) (410 aa)%3B Fasta score E(): 0%2C 86.7%25 identity in 407 aa overlap and Streptomyces coelicolor SW:TRPB_STRCO (O05625) (427 aa)%3B Fasta score E(): 0%2C 65.2%25 identity in 405 aa overlap. Contains Pfam match to entry PF00291 S_T_dehydratase%2C Pyridoxal-phosphate dependent enzyme. Contains PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site.;gbkey=CDS;gene=trpB;product=tryptophan synthase [beta] chain;protein_id=CAC31653.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1515589	1516578	.	+	.	ID=id-trpB;Note=Pfam match to entry PF00291 S_T_dehydratase%2C Pyridoxal-phosphate dependent enzyme%2C score 429.60%2C E-value 2.8e-125;gbkey=misc_feature;gene=trpB
AL450380.1	EMBL	sequence_feature	1515682	1515711	.	+	.	ID=id-trpB-2;Note=PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site;gbkey=misc_feature;gene=trpB
AL450380.1	EMBL	gene	1516632	1517444	.	+	.	ID=gene-trpA;Name=trpA;gbkey=Gene;gene=trpA;gene_biotype=protein_coding;gene_synonym=ML1273
AL450380.1	EMBL	CDS	1516632	1517444	.	+	0	ID=cds-CAC31654.1;Parent=gene-trpA;Dbxref=GOA:Q9CC53,InterPro:IPR002028,InterPro:IPR011060,InterPro:IPR013785,InterPro:IPR018204,NCBI_GP:CAC31654.1;Name=CAC31654.1;Note=Highly similar to many tryptophan synthases [alpha chain] (EC 4.2.1.20) involved in tryptophan biosynthesis e.g. Mycobacterium tuberculosis RV1613 SW:TRPA_MYCTU (O06130) (270 aa)%3B Fasta score E(): 0%2C 86.0%25 identity in 265 aa overlap and Streptomyces coelicolor SW:TRPA_STRCO (O68816) (271 aa)%3B Fasta score E(): 0%2C 46.4%25 identity in 261 aa overlap. Contains Pfam match to entry PF00290 trp_syntA%2C Tryptophan synthase alpha chain.;gbkey=CDS;gene=trpA;product=tryptophan synthase [alpha] chain;protein_id=CAC31654.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1516707	1517360	.	+	.	ID=id-trpA;Note=Pfam match to entry PF00290 trp_syntA%2C Tryptophan synthase alpha chain%2C score 239.80%2C E-value 3.8e-68;gbkey=misc_feature;gene=trpA
AL450380.1	EMBL	gene	1517441	1518433	.	+	.	ID=gene-ML1274;Name=ML1274;gbkey=Gene;gene=ML1274;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1517441	1518433	.	+	0	ID=cds-CAC31655.1;Parent=gene-ML1274;Dbxref=GOA:Q9CC52,InterPro:IPR001640,NCBI_GP:CAC31655.1;Name=CAC31655.1;Note=Similar to many prolipoprotein diacylglyceryl transferases (EC 2.4.99.-)%2C constituting the first step in lipoprotein biosynthesis e.g. Staphylococcus aureus SW:LGT_STAAU (P52282) (279 aa)%3B Fasta score E(): 3.3e-12%2C 30.6%25 identity in 258 aa overlap and Mycobacterium tuberculosis RV1614 TR:O06131 (EMBL:Z95554) (468 aa)%3B Fasta score E(): 0%2C 75.5%25 identity in 322 aa overlap. Contains multiple possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF01790 LGT%2C Prolipoprotein diacylglyceryl transferase.;gbkey=CDS;gene=ML1274;product=possible prolipoprotein diacylglyceryl transferase.;protein_id=CAC31655.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1517471	1518307	.	+	.	ID=id-ML1274;Note=Pfam match to entry PF01790 LGT%2C Prolipoprotein diacylglyceryl transferase%2C score 352.70%2C E-value 3.9e-102;gbkey=misc_feature;gene=ML1274
AL450380.1	EMBL	gene	1518430	1518666	.	+	.	ID=gene-ML1275;Name=ML1275;gbkey=Gene;gene=ML1275;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1518430	1518666	.	+	0	ID=cds-CAC31656.1;Parent=gene-ML1275;Dbxref=UniProtKB/TrEMBL:Q9CC51,NCBI_GP:CAC31656.1;Name=CAC31656.1;Note=unknown function.;gbkey=CDS;gene=ML1275;product=hypothetical protein;protein_id=CAC31656.1;transl_table=11
AL450380.1	EMBL	gene	1519218	1519658	.	+	.	ID=gene-ML1276;Name=ML1276;gbkey=Gene;gene=ML1276;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1519218	1519658	.	+	0	ID=cds-CAC31657.1;Parent=gene-ML1276;Dbxref=InterPro:IPR021215,UniProtKB/TrEMBL:Q9CC50,NCBI_GP:CAC31657.1;Name=CAC31657.1;Note=Similar to several proteins of undefined function including: Mycobacterium tuberculosis RV1616 TR:O06133 (EMBL:Z95554) (132 aa)%3B Fasta score E(): 0%2C 68.5%25 identity in 127 aa overlap and Streptomyces coelicolor TR:Q9S2U5 (EMBL:AL096884) (148 aa)%3B Fasta score E(): 5.3e-11%2C 41.4%25 identity in 128 aa overlap. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1276;product=conserved membrane protein;protein_id=CAC31657.1;transl_table=11
AL450380.1	EMBL	gene	1519741	1521159	.	+	.	ID=gene-pykA;Name=pykA;gbkey=Gene;gene=pykA;gene_biotype=protein_coding;gene_synonym=ML1277
AL450380.1	EMBL	CDS	1519741	1521159	.	+	0	ID=cds-CAC31658.1;Parent=gene-pykA;Dbxref=GOA:Q9CC49,InterPro:IPR001697,InterPro:IPR011037,InterPro:IPR015793,InterPro:IPR015794,InterPro:IPR015795,InterPro:IPR015806,InterPro:IPR015813,InterPro:IPR018209,UniProtKB/TrEMBL:Q9CC49,NCBI_GP:CAC31658.1;Name=CAC31658.1;Note=Highly similar to many pyruvate kinases (EC 2.7.1.40) including: Mycobacterium tuberculosis RV1617 SW:KPYK_MYCTU (O06134) (472 aa)%3B Fasta score E(): 0%2C 90.7%25 identity in 472 aa overlap and Corynebacterium glutamicum SW:KPYK_CORGL (Q46078) (475 aa)%3B Fasta score E(): 0%2C 71.8%25 identity in 468 aa overlap. Contains Pfam match to entry PF00224 PK%2C Pyruvate kinase. Contains PS00110 Pyruvate kinase active site signature.;gbkey=CDS;gene=pykA;product=pyruvate kinase;protein_id=CAC31658.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1519747	1521141	.	+	.	ID=id-pykA;Note=Pfam match to entry PF00224 PK%2C Pyruvate kinase%2C score 522.10%2C E-value 4e-153;gbkey=misc_feature;gene=pykA
AL450380.1	EMBL	sequence_feature	1520377	1520415	.	+	.	ID=id-pykA-2;Note=PS00110 Pyruvate kinase active site signature;gbkey=misc_feature;gene=pykA
AL450380.1	EMBL	gene	1521266	1522159	.	+	.	ID=gene-tesB;Name=tesB;gbkey=Gene;gene=tesB;gene_biotype=protein_coding;gene_synonym=ML1278
AL450380.1	EMBL	CDS	1521266	1522159	.	+	0	ID=cds-CAC31659.1;Parent=gene-tesB;Dbxref=GOA:Q9CC48,InterPro:IPR003703,InterPro:IPR025652,InterPro:IPR029069,UniProtKB/TrEMBL:Q9CC48,NCBI_GP:CAC31659.1;Name=CAC31659.1;Note=Highly similar to many acyl CoA thioesterases including: Escherichia coli SW:TESB_ECOLI (P23911) (285 aa)%3B Fasta score E(): 5.6e-26%2C 32.1%25 identity in 287 aa overlap and Mycobacterium tuberculosis RV1618 TR:O06135 (EMBL:Z95554) (300 aa)%3B Fasta score E(): 0%2C 85.1%25 identity in 288 aa overlap.;gbkey=CDS;gene=tesB;product=acyl CoA thioesterase II;protein_id=CAC31659.1;transl_table=11
AL450380.1	EMBL	pseudogene	1522329	1523600	.	+	.	ID=gene-ML1279;Name=ML1279;gbkey=Gene;gene=ML1279;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1522329	1523600	.	+	0	ID=cds-ML1279;Parent=gene-ML1279;Note=Possible pseudogene of M. tuberculosis orthologue Rv1619 (Best blastx score 351);gbkey=CDS;gene=ML1279;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1523862	1524233	.	+	.	ID=gene-ML1280;Name=ML1280;gbkey=Gene;gene=ML1280;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1523862	1524233	.	+	0	ID=cds-ML1280;Parent=gene-ML1280;Note=Possible pseudogene of M. tuberculosis orthologue Rv0765c (Best blastx score 81);gbkey=CDS;gene=ML1280;product=short-chain alcohol dehydrogenase family (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1524336	1526029	.	-	.	ID=gene-cydC;Name=cydC;gbkey=Gene;gene=cydC;gene_biotype=pseudogene;gene_synonym=ML1281;pseudo=true
AL450380.1	EMBL	CDS	1524336	1526029	.	-	0	ID=cds-cydC;Parent=gene-cydC;Note=Possible pseudogene of M. tuberculosis orthologue Rv1620c cydC;gbkey=CDS;gene=cydC;product=ABC transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1526113	1527669	.	-	.	ID=gene-cydD;Name=cydD;gbkey=Gene;gene=cydD;gene_biotype=pseudogene;gene_synonym=ML1282;pseudo=true
AL450380.1	EMBL	CDS	1526113	1527669	.	-	0	ID=cds-cydD;Parent=gene-cydD;Note=Possible pseudogene of M. tuberculosis orthologue Rv1621c cydD;gbkey=CDS;gene=cydD;product=ABC transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1527792	1528792	.	-	.	ID=gene-cydB;Name=cydB;gbkey=Gene;gene=cydB;gene_biotype=pseudogene;gene_synonym=ML1283;pseudo=true
AL450380.1	EMBL	CDS	1527792	1528792	.	-	0	ID=cds-cydB;Parent=gene-cydB;Note=Possible pseudogene of M. tuberculosis orthologue cydB (Best blastx score 722);gbkey=CDS;gene=cydB;product=cytochrome d ubiquinol oxidase subunit II (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1528827	1530131	.	-	.	ID=gene-appC;Name=appC;gbkey=Gene;gene=appC;gene_biotype=pseudogene;gene_synonym=ML1284;pseudo=true
AL450380.1	EMBL	CDS	1528827	1530131	.	-	0	ID=cds-appC;Parent=gene-appC;Note=Possible pseudogene of M. tuberculosis orthologue appC (Best blastx score 1184);gbkey=CDS;gene=appC;product=cytochrome bd-II oxidase subunit I (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1530416	1531372	.	-	.	ID=gene-ML1285;Name=ML1285;gbkey=Gene;gene=ML1285;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1530416	1531372	.	-	0	ID=cds-ML1285;Parent=gene-ML1285;Note=Possible pseudogene of M. tuberculosis orthologue Rv1625c (Best blastx score 272);gbkey=CDS;gene=ML1285;product=C-term similar eukaryotic adenylate/guanylate cyclases (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1531698	1531774	.	-	.	ID=gene-leuV;Name=leuV;gbkey=Gene;gene=leuV;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	1531698	1531774	.	-	.	ID=rna-leuV;Parent=gene-leuV;Note=tRNA Leu anticodon CAA%2C Cove score 48.78;gbkey=tRNA;gene=leuV;product=tRNA-Leu
AL450380.1	EMBL	exon	1531698	1531774	.	-	.	ID=exon-leuV-1;Parent=rna-leuV;Note=tRNA Leu anticodon CAA%2C Cove score 48.78;gbkey=tRNA;gene=leuV;product=tRNA-Leu
AL450380.1	EMBL	gene	1531867	1532484	.	+	.	ID=gene-ML1286;Name=ML1286;gbkey=Gene;gene=ML1286;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1531867	1532484	.	+	0	ID=cds-CAC31667.1;Parent=gene-ML1286;Dbxref=GOA:Q9CC47,InterPro:IPR001789,InterPro:IPR005561,InterPro:IPR008327,InterPro:IPR011006,InterPro:IPR011991,UniProtKB/TrEMBL:Q9CC47,NCBI_GP:CAC31667.1;Name=CAC31667.1;Note=Similar to many proposed two-component response regulators including: Streptomyces coelicolor TR:Q9S2J0 (EMBL:AL109732) (218 aa)%3B Fasta score E(): 0%2C 65.3%25 identity in 202 aa overlap and Azotobacter vinelandii TR:Q44531 (EMBL:X83602) (192 aa)%3B Fasta score E(): 4.5e-11%2C 30.1%25 identity in 186 aa overlap. Also highly similar to Mycobacterium tuberculosis probable two-component response system transcriptional regulator RV1626 TR:O06143 (EMBL:Z95554) (205 aa)%3B Fasta score E(): 0%2C 90.7%25 identity in 205 aa overlap. Contains Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain.;gbkey=CDS;gene=ML1286;product=possible two-component response regulatory protein;protein_id=CAC31667.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1531960	1532241	.	+	.	ID=id-ML1286;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 91.00%2C E-value 2.4e-23;gbkey=misc_feature;gene=ML1286
AL450380.1	EMBL	pseudogene	1532564	1533757	.	-	.	ID=gene-ML1287;Name=ML1287;gbkey=Gene;gene=ML1287;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1532564	1533757	.	-	0	ID=cds-ML1287;Parent=gene-ML1287;Note=Possible pseudogene of M. tuberculosis orthologue Rv1627c (Best blastx score 235);gbkey=CDS;gene=ML1287;product=lipid carrier protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	1533883	1534810	.	-	.	ID=id-AL450380.1:1533883..1534810;Note=Dispersed repeat%2C RLEP%2C copy 18;gbkey=repeat_region
AL450380.1	EMBL	gene	1535951	1536036	.	-	.	ID=gene-leuU;Name=leuU;gbkey=Gene;gene=leuU;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	1535951	1536036	.	-	.	ID=rna-leuU;Parent=gene-leuU;Note=tRNA Leu anticodon GAG%2C Cove score 59.66;gbkey=tRNA;gene=leuU;product=tRNA-Leu
AL450380.1	EMBL	exon	1535951	1536036	.	-	.	ID=exon-leuU-1;Parent=rna-leuU;Note=tRNA Leu anticodon GAG%2C Cove score 59.66;gbkey=tRNA;gene=leuU;product=tRNA-Leu
AL450380.1	EMBL	gene	1536149	1537552	.	+	.	ID=gene-ML1288;Name=ML1288;gbkey=Gene;gene=ML1288;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1536149	1537552	.	+	0	ID=cds-CAC31669.1;Parent=gene-ML1288;Dbxref=GOA:Q9CC46,InterPro:IPR001261,InterPro:IPR002933,InterPro:IPR011650,UniProtKB/TrEMBL:Q9CC46,NCBI_GP:CAC31669.1;Name=CAC31669.1;Note=Similar to several members of the ARGE/DAPE/ACY1 protein family including: Mycobacterium tuberculosis DapE%2C RV2141C%2C TR:O06234 (EMBL:Z95388) (448 aa)%3B Fasta score E(): 0%2C 83.9%25 identity in 448 aa overlap and Streptomyces coelicolor putative aminoacylase TR:Q9ZBI7 (EMBL:AL035161) (443 aa)%3B Fasta score E(): 0%2C 47.6%25 identity in 433 aa overlapO. Contains Pfam match to entry PF01546 Peptidase_M20%2C Peptidase family M20/M25/M40. Contains PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1.;gbkey=CDS;gene=ML1288;product=possible peptidase;protein_id=CAC31669.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1536260	1537384	.	+	.	ID=id-ML1288;Note=Pfam match to entry PF01546 Peptidase_M20%2C Peptidase family M20/M25/M40%2C score 254.70%2C E-value 1.2e-72;gbkey=misc_feature;gene=ML1288
AL450380.1	EMBL	sequence_feature	1536455	1536484	.	+	.	ID=id-ML1288-2;Note=PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1;gbkey=misc_feature;gene=ML1288
AL450380.1	EMBL	gene	1537584	1538114	.	+	.	ID=gene-ML1289;Name=ML1289;gbkey=Gene;gene=ML1289;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1537584	1538114	.	+	0	ID=cds-CAC31670.1;Parent=gene-ML1289;Dbxref=InterPro:IPR005247,InterPro:IPR008914,UniProtKB/TrEMBL:Q9CC45,NCBI_GP:CAC31670.1;Name=CAC31670.1;Note=Similar to many proteins of undefined function including: Mycobacterium tuberculosis Rv2140c SW:YL40_MYCTU (O06235) (176 aa)%3B Fasta score E(): 0%2C 86.3%25 identity in 175 aa overlap and Escherichia coli SW:YBCL_ECOLI (P77368) (183 aa)%3B Fasta score E(): 1.1e-21%2C 45.3%25 identity in 161 aa overlap. Note this CDS contains a strong Pfam hit to the Eukaryotic phosphatidylethanolamine-binding protein motif. In Eukaryotes this motif is associated with the binding of hydrophobic ligands and nucleotides. Contains Pfam match to entry PF01161 PBP%2C Phosphatidylethanolamine-binding protein.;gbkey=CDS;gene=ML1289;product=conserved hypothetical protein;protein_id=CAC31670.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1537605	1538102	.	+	.	ID=id-ML1289;Note=Pfam match to entry PF01161 PBP%2C Phosphatidylethanolamine-binding protein%2C score -64.60%2C E-value 0.58;gbkey=misc_feature;gene=ML1289
AL450380.1	EMBL	pseudogene	1538214	1539640	.	+	.	ID=gene-ML1290;Name=ML1290;gbkey=Gene;gene=ML1290;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1538214	1539640	.	+	0	ID=cds-ML1290;Parent=gene-ML1290;Note=Possible pseudogene of M. tuberculosis orthologue Rv0336 (Best blastx score 285);gbkey=CDS;gene=ML1290;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	1538642	1539695	.	+	.	ID=id-AL450380.1:1538642..1539695;Note=1054 bp repeat%2C 100%25 identical to bases 2233397..2234450;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	1539886	1539935	.	+	.	ID=id-AL450380.1:1539886..1539935;Note=50 bp region associated with only one other copy of LEPRPT at 2204517..2204566;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	1539936	1541188	.	+	.	ID=id-AL450380.1:1539936..1541188;Note=LEPRPT%2C copy 4. Shares 99 %25 sequence identity with bases 727206..728484.;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	1540164	1540326	.	-	.	ID=gene-ML1291;Name=ML1291;gbkey=Gene;gene=ML1291;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1540164	1540326	.	-	0	ID=cds-ML1291;Parent=gene-ML1291;Note=Possible pseudogene of M. tuberculosis orthologue Rv2087 (Best blastx score 75);gbkey=CDS;gene=ML1291;product=putative transposase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1540612	1540854	.	-	.	ID=gene-ML1292;Name=ML1292;gbkey=Gene;gene=ML1292;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1540612	1540854	.	-	0	ID=cds-CAC31673.1;Parent=gene-ML1292;Dbxref=UniProtKB/TrEMBL:Q7AQ76,NCBI_GP:CAC31673.1;Name=CAC31673.1;Note=unknown function.;gbkey=CDS;gene=ML1292;product=hypothetical protein;protein_id=CAC31673.1;transl_table=11
AL450380.1	EMBL	repeat_region	1541129	1541188	.	+	.	ID=id-AL450380.1:1541129..1541188;Note=61 bp repeat found at 3'-end of LEPRPT and situated 5' to some copies of REPLEP;gbkey=repeat_region
AL450380.1	EMBL	gene	1543264	1544337	.	-	.	ID=gene-pyrD;Name=pyrD;gbkey=Gene;gene=pyrD;gene_biotype=protein_coding;gene_synonym=ML1293
AL450380.1	EMBL	CDS	1543264	1544337	.	-	0	ID=cds-CAC31674.1;Parent=gene-pyrD;Dbxref=GOA:P46727,InterPro:IPR001295,InterPro:IPR005719,InterPro:IPR012135,InterPro:IPR013785,NCBI_GP:CAC31674.1;Name=CAC31674.1;Note=Highly similar to many dihydroorotate dehydrogenases (EC 1.3.3.1) involved in pyrimidine biosynthesis%2C including: Escherichia coli PyrD SW:PYRD_ECOLI (P05021) (336 aa)%3B Fasta score E(): 0%2C 42.3%25 identity in 333 aa overlap and Mycobacterium tuberculosis PyrD (RV2139) SW:PYRD_MYCTU (O06236) (357 aa)%3B Fasta score E(): 0%2C 80.9%25 identity in 351 aa overlap. Contains Pfam match to entry PF01180 DHOdehase%2C Dihydroorotate dehydrogenase. Contains PS00912 Dihydroorotate dehydrogenase signature 2. Contains PS00911 Dihydroorotate dehydrogenase signature 1.;gbkey=CDS;gene=pyrD;product=dihydroorotate dehydrogenase;protein_id=CAC31674.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1543357	1544187	.	-	.	ID=id-pyrD;Note=Pfam match to entry PF01180 DHOdehase%2C Dihydroorotate dehydrogenase%2C score 526.50%2C E-value 1.9e-154;gbkey=misc_feature;gene=pyrD
AL450380.1	EMBL	sequence_feature	1543411	1543473	.	-	.	ID=id-pyrD-2;Note=PS00912 Dihydroorotate dehydrogenase signature 2;gbkey=misc_feature;gene=pyrD
AL450380.1	EMBL	sequence_feature	1544026	1544085	.	-	.	ID=id-pyrD-3;Note=PS00911 Dihydroorotate dehydrogenase signature 1;gbkey=misc_feature;gene=pyrD
AL450380.1	EMBL	gene	1544355	1544609	.	-	.	ID=gene-ML1294;Name=ML1294;gbkey=Gene;gene=ML1294;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1544355	1544609	.	-	0	ID=cds-CAC31675.1;Parent=gene-ML1294;Dbxref=UniProtKB/TrEMBL:Q9CC44,NCBI_GP:CAC31675.1;Name=CAC31675.1;Note=unknown function.;gbkey=CDS;gene=ML1294;product=hypothetical protein;protein_id=CAC31675.1;transl_table=11
AL450380.1	EMBL	pseudogene	1544609	1545655	.	-	.	ID=gene-ML1295;Name=ML1295;gbkey=Gene;gene=ML1295;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1544609	1545655	.	-	0	ID=cds-ML1295;Parent=gene-ML1295;Note=Possible pseudogene similar to M. tuberculosis orthologue;gbkey=CDS;gene=ML1295;product=(pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1545740	1546075	.	+	.	ID=gene-ML1296;Name=ML1296;gbkey=Gene;gene=ML1296;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1545740	1546075	.	+	0	ID=cds-CAC31677.1;Parent=gene-ML1296;Dbxref=UniProtKB/TrEMBL:Q9CC43,NCBI_GP:CAC31677.1;Name=CAC31677.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV2137C TR:O06238 (EMBL:Z95388) (137 aa)%3B Fasta score E(): 1.3e-28%2C 75.5%25 identity in 106 aa overlap.;gbkey=CDS;gene=ML1296;product=conserved hypothetical protein;protein_id=CAC31677.1;transl_table=11
AL450380.1	EMBL	gene	1546116	1546964	.	+	.	ID=gene-ML1297;Name=ML1297;gbkey=Gene;gene=ML1297;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1546116	1546964	.	+	0	ID=cds-CAC31678.1;Parent=gene-ML1297;Dbxref=GOA:Q9CC42,InterPro:IPR003824,NCBI_GP:CAC31678.1;Name=CAC31678.1;Note=Similar to several proposed undecaprenol kinases or bacitracin resistance proteins including: Escherichia coli SW:BACA_ECOLI (P31054) (273 aa)%3B Fasta score E(): 3.7e-23%2C 34.0%25 identity in 265 aa overlap and Mycobacterium tuberculosis RV2136C TR:O06239 (EMBL:Z95388) (276 aa)%3B Fasta score E(): 0%2C 82.6%25 identity in 276 aa overlap. Contains multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1297;product=possible undecaprenol kinase;protein_id=CAC31678.1;transl_table=11
AL450380.1	EMBL	gene	1546961	1547713	.	+	.	ID=gene-ML1298;Name=ML1298;gbkey=Gene;gene=ML1298;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1546961	1547713	.	+	0	ID=cds-CAC31679.1;Parent=gene-ML1298;Dbxref=InterPro:IPR013078,InterPro:IPR022492,InterPro:IPR029033,UniProtKB/TrEMBL:Q9CC41,NCBI_GP:CAC31679.1;Name=CAC31679.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein RV2135C TR:O06240 (EMBL:Z95388) (236 aa)%3B Fasta score E(): 0%2C 75.2%25 identity in 250 aa overlap. Also similar%2C in regions%2C to several putative phosphoglycerate mutases e.g. Escherichia coli SW:PMG2_ECOLI (P36942) (215 aa)%3B Fasta score E(): 1.2e-06%2C 27.1%25 identity in 192 aa overlap. Contains Pfam match to entry PF00300 PGAM%2C Phosphoglycerate mutase family.;gbkey=CDS;gene=ML1298;product=conserved hypothetical protein;protein_id=CAC31679.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1546970	1547530	.	+	.	ID=id-ML1298;Note=Pfam match to entry PF00300 PGAM%2C Phosphoglycerate mutase family%2C score 46.10%2C E-value 1.3e-11;gbkey=misc_feature;gene=ML1298
AL450380.1	EMBL	gene	1547791	1548381	.	+	.	ID=gene-ML1299;Name=ML1299;gbkey=Gene;gene=ML1299;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1547791	1548381	.	+	0	ID=cds-CAC31680.1;Parent=gene-ML1299;Dbxref=InterPro:IPR021441,UniProtKB/TrEMBL:Q7AQ75,NCBI_GP:CAC31680.1;Name=CAC31680.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein RV2134C TR:O06241 (EMBL:Z95388) (195 aa)%3B Fasta score E(): 0%2C 91.1%25 identity in 192 aa overlap.;gbkey=CDS;gene=ML1299;product=conserved hypothetical protein;protein_id=CAC31680.1;transl_table=11
AL450380.1	EMBL	gene	1548392	1549180	.	+	.	ID=gene-ML1300;Name=ML1300;gbkey=Gene;gene=ML1300;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1548392	1549180	.	+	0	ID=cds-CAC31681.1;Parent=gene-ML1300;Dbxref=GOA:Q9CC40,InterPro:IPR000403,InterPro:IPR022292,UniProtKB/TrEMBL:Q9CC40,NCBI_GP:CAC31681.1;Name=CAC31681.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein RV2133C TR:O06242 (EMBL:Z95388) (262 aa)%3B Fasta score E(): 0%2C 79.4%25 identity in 262 aa overlap.;gbkey=CDS;gene=ML1300;product=conserved hypothetical protein;protein_id=CAC31681.1;transl_table=11
AL450380.1	EMBL	gene	1549219	1550034	.	+	.	ID=gene-ML1301;Name=ML1301;gbkey=Gene;gene=ML1301;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1549219	1550034	.	+	0	ID=cds-CAC31682.1;Parent=gene-ML1301;Dbxref=GOA:P46726,InterPro:IPR000760,InterPro:IPR020583,NCBI_GP:CAC31682.1;Name=CAC31682.1;Note=Similar to several inositol monophosphatase family proteins including: Escherichia coli CysQ SW:CYSQ_ECOLI (P22255) (246 aa)%3B Fasta score E(): 9.6e-07%2C 31.3%25 identity in 217 aa overlap and Mycobacterium tuberculosis CysQ protein homolog RV2131C SW:CYSQ_MYCTU (O06244) (267 aa)%3B Fasta score E(): 0%2C 76.0%25 identity in 271 aa overlap. Contains Pfam match to entry PF00459 inositol_P%2C Inositol monophosphatase family. Contains PS00629 Inositol monophosphatase family signature 1.;gbkey=CDS;gene=ML1301;product=possible inositol monophosphatase family protein;protein_id=CAC31682.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1549426	1549515	.	+	.	ID=id-ML1301;Note=Pfam match to entry PF00459 inositol_P%2C Inositol monophosphatase family%2C score 16.70%2C E-value 0.0011;gbkey=misc_feature;gene=ML1301
AL450380.1	EMBL	sequence_feature	1549480	1549521	.	+	.	ID=id-ML1301-2;Note=PS00629 Inositol monophosphatase family signature 1;gbkey=misc_feature;gene=ML1301
AL450380.1	EMBL	gene	1550230	1551384	.	+	.	ID=gene-cysS2;Name=cysS2;gbkey=Gene;gene=cysS2;gene_biotype=protein_coding;gene_synonym=ML1302
AL450380.1	EMBL	CDS	1550230	1551384	.	+	0	ID=cds-CAC31683.1;Parent=gene-cysS2;Dbxref=GOA:Q49784,InterPro:IPR014729,InterPro:IPR017812,InterPro:IPR024909,NCBI_GP:CAC31683.1;Name=CAC31683.1;Note=Highly similar to multiple cysteinyl-tRNA synthetases including: Escherichia coli SW:SYC_ECOLI (P21888) (461 aa)%3B Fasta score E(): 0%2C 36.8%25 identity in 386 aa overlap and Mycobacterium tuberculosis RV2130C SW:SYC2_MYCTU (O33264) (414 aa)%3B Fasta score E(): 0%2C 85.1%25 identity in 383 aa overlap. Contains Pfam match to entry PF01406 tRNA-synt_1e%2C tRNA synthetases class I (C).;gbkey=CDS;gene=cysS2;product=cysteinyl-tRNA synthase;protein_id=CAC31683.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1550257	1551285	.	+	.	ID=id-cysS2;Note=Pfam match to entry PF01406 tRNA-synt_1e%2C tRNA synthetases class I (C)%2C score 255.80%2C E-value 5.8e-73;gbkey=misc_feature;gene=cysS2
AL450380.1	EMBL	pseudogene	1551419	1552164	.	+	.	ID=gene-ML1303;Name=ML1303;gbkey=Gene;gene=ML1303;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1551419	1552164	.	+	0	ID=cds-ML1303;Parent=gene-ML1303;Note=Possible pseudogene of M. tuberculosis orthologue Rv2129c (Best blastx score 193);gbkey=CDS;gene=ML1303;product=putative oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1552519	1554015	.	-	.	ID=gene-ansP1;Name=ansP1;gbkey=Gene;gene=ansP1;gene_biotype=protein_coding;gene_synonym=ML1304
AL450380.1	EMBL	CDS	1552519	1554015	.	-	0	ID=cds-CAC31685.1;Parent=gene-ansP1;Dbxref=GOA:Q7AQ74,InterPro:IPR002293,InterPro:IPR004840,InterPro:IPR004841,UniProtKB/TrEMBL:Q7AQ74,NCBI_GP:CAC31685.1;Name=CAC31685.1;Note=Highly similar to many L-asparagine transport proteins including: Salmonella typhimurium AnsP SW:ANSP_SALTY (P40812) (497 aa)%3B Fasta score E(): 0%2C 58.7%25 identity in 477 aa overlap and Mycobacterium tuberculosis RV2127 SW:ANSP_MYCTU (O33261) (489 aa)%3B Fasta score E(): 0%2C 83.4%25 identity in 488 aa overlap. Contains multiple possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF00324 aa_permeases%2C Amino acid permease. Contains PS00218 Amino acid permeases signature.%3B~Almost identical to the duplicated sequence ML1305;gbkey=CDS;gene=ansP1;product=probable L-asparagine permease;protein_id=CAC31685.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1552603	1553940	.	-	.	ID=id-ansP1;Note=Pfam match to entry PF00324 aa_permeases%2C Amino acid permease%2C score 500.20%2C E-value 1.6e-146;gbkey=misc_feature;gene=ansP1
AL450380.1	EMBL	sequence_feature	1553749	1553841	.	-	.	ID=id-ansP1-2;Note=PS00218 Amino acid permeases signature;gbkey=misc_feature;gene=ansP1
AL450380.1	EMBL	repeat_region	1552534	1554084	.	-	.	ID=id-AL450380.1:1552534..1554084;Note=1551 bp repeat%2C identical in sequence to duplicated region complement(1554201..1555751).;gbkey=repeat_region
AL450380.1	EMBL	gene	1554165	1555682	.	-	.	ID=gene-ansP2;Name=ansP2;gbkey=Gene;gene=ansP2;gene_biotype=protein_coding;gene_synonym=ML1305
AL450380.1	EMBL	CDS	1554165	1555682	.	-	0	ID=cds-CAC31686.1;Parent=gene-ansP2;Dbxref=GOA:Q7AQ73,InterPro:IPR002293,InterPro:IPR004840,InterPro:IPR004841,UniProtKB/TrEMBL:Q7AQ73,NCBI_GP:CAC31686.1;Name=CAC31686.1;Note=Highly similar to many L-asparagine transport proteins including: Salmonella typhimurium AnsP SW:ANSP_SALTY (P40812) (497 aa)%3B Fasta score E(): 0%2C 58.9%25 identity in 477 aa overlap and Mycobacterium tuberculosis RV2127 SW:ANSP_MYCTU (O33261) (489 aa)%3B Fasta score E(): 0%2C 83.7%25 identity in 485 aa overlap. Contains multiple possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF00324 aa_permeases%2C Amino acid permease. Contains PS00218 Amino acid permeases signature.%3B~Almost identical to the duplicated sequence ML1304;gbkey=CDS;gene=ansP2;product=probable L-asparagine permease;protein_id=CAC31686.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1554270	1555607	.	-	.	ID=id-ansP2;Note=Pfam match to entry PF00324 aa_permeases%2C Amino acid permease%2C score 502.50%2C E-value 3.2e-147;gbkey=misc_feature;gene=ansP2
AL450380.1	EMBL	sequence_feature	1555416	1555508	.	-	.	ID=id-ansP2-2;Note=PS00218 Amino acid permeases signature;gbkey=misc_feature;gene=ansP2
AL450380.1	EMBL	repeat_region	1554201	1555751	.	-	.	ID=id-AL450380.1:1554201..1555751;Note=1551 bp repeat%2C identical in sequence to duplicated region complement(1552534..1554084).;gbkey=repeat_region
AL450380.1	EMBL	gene	1555819	1556643	.	-	.	ID=gene-ML1306;Name=ML1306;gbkey=Gene;gene=ML1306;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1555819	1556643	.	-	0	ID=cds-CAC31687.1;Parent=gene-ML1306;Dbxref=InterPro:IPR008492,InterPro:IPR019151,UniProtKB/TrEMBL:Q9CC38,NCBI_GP:CAC31687.1;Name=CAC31687.1;Note=Similar to several proteins of unkown function including: Mycobacterium tuberculosis RV2125 TR:O33260 (EMBL:Z97559) (292 aa)%3B Fasta score E(): 0%2C 85.0%25 identity in 274 aa overlap and Streptomyces coelicolor TR:Q9S2K6 (EMBL:AL109732) (312 aa)%3B Fasta score E(): 1.6e-07%2C 23.4%25 identity in 278 aa overlap.;gbkey=CDS;gene=ML1306;product=conserved hypothetical protein;protein_id=CAC31687.1;transl_table=11
AL450380.1	EMBL	gene	1556851	1560471	.	+	.	ID=gene-metH;Name=metH;gbkey=Gene;gene=metH;gene_biotype=protein_coding;gene_synonym=ML1307
AL450380.1	EMBL	CDS	1556851	1560471	.	+	0	ID=cds-CAC31688.1;Parent=gene-metH;Dbxref=GOA:Q49775,InterPro:IPR000489,InterPro:IPR003726,InterPro:IPR003759,InterPro:IPR004223,InterPro:IPR006158,InterPro:IPR011005,InterPro:IPR011822,NCBI_GP:CAC31688.1;Name=CAC31688.1;Note=Highly similar to many 5-methyltetrahydrofolate--homocysteine methyltransferases (EC 2.1.1.13) involved in methionine biosynthesis%2C including: Escherichia coli MetH SW:METH_ECOLI (P13009) (1226 aa)%3B Fasta score E(): 0%2C 31.6%25 identity in 1233 aa overlap and Mycobacterium tuberculosis RV2124C SW:METH_MYCTU (O33259) (1192 aa)%3B Fasta score E(): 0%2C 88.3%25 identity in 1204 aa overlap.;gbkey=CDS;gene=metH;product=5-methyltetrahydrofolate-homocysteine methyltransferase;protein_id=CAC31688.1;transl_table=11
AL450380.1	EMBL	pseudogene	1560499	1561556	.	-	.	ID=gene-PPE-6;Name=PPE;gbkey=Gene;gene=PPE;gene_biotype=pseudogene;gene_synonym=ML1308;pseudo=true
AL450380.1	EMBL	CDS	1560499	1561556	.	-	0	ID=cds-PPE-5;Parent=gene-PPE-6;Note=Possible pseudogene of M. tuberculosis orthologue PPE (Best blastx score 241);gbkey=CDS;gene=PPE;product=PPE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1561966	1562247	.	+	.	ID=gene-hisE;Name=hisE;gbkey=Gene;gene=hisE;gene_biotype=protein_coding;gene_synonym=ML1309
AL450380.1	EMBL	CDS	1561966	1562247	.	+	0	ID=cds-CAC31690.1;Parent=gene-hisE;Dbxref=GOA:Q49786,InterPro:IPR008179,InterPro:IPR021130,NCBI_GP:CAC31690.1;Name=CAC31690.1;Note=Highly similar to several phosphoribosyl-ATP pyrophosphatases (EC 3.6.1.31) involved in histidine biosynthesis%2C including: Sulfolobus solfataricus HisE SW:HIS2_SULSO (O33776) (94 aa)%3B Fasta score E(): 0.00013%2C 32.5%25 identity in 83 aa overlap and Mycobacterium tuberculosis RV2122C SW:HIS2_MYCTU (O33257) (93 aa)%3B Fasta score E(): 2.5e-31%2C 86.0%25 identity in 93 aa overlap. Contains Pfam match to entry PF01503 PRA-PH%2C Phosphoribosyl-ATP pyrophosphohydrolase.;gbkey=CDS;gene=hisE;product=phosphoribosyl-ATP pyrophosphatase;protein_id=CAC31690.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1561993	1562244	.	+	.	ID=id-hisE;Note=Pfam match to entry PF01503 PRA-PH%2C Phosphoribosyl-ATP pyrophosphohydrolase%2C score 18.40%2C E-value 0.0001;gbkey=misc_feature;gene=hisE
AL450380.1	EMBL	gene	1562244	1563113	.	+	.	ID=gene-hisG;Name=hisG;gbkey=Gene;gene=hisG;gene_biotype=protein_coding;gene_synonym=ML1310
AL450380.1	EMBL	CDS	1562244	1563113	.	+	0	ID=cds-CAC31691.1;Parent=gene-hisG;Dbxref=GOA:Q49776,InterPro:IPR001348,InterPro:IPR011322,InterPro:IPR013115,InterPro:IPR013820,InterPro:IPR015867,InterPro:IPR018198,InterPro:IPR020621,NCBI_GP:CAC31691.1;Name=CAC31691.1;Note=Highly similar to many ATP phosphoribosyltransferases (EC 2.4.2.17) involved in histidine biosynthesis%2C including: Sulfolobus solfataricus HisG SW:HIS1_SULSO (O33771) (290 aa)%3B Fasta score E(): 4e-20%2C 32.0%25 identity in 291 aa overlap and Mycobacterium tuberculosis RV2121C SW:HIS1_MYCTU (O33256) (284 aa)%3B Fasta score E(): 0%2C 87.8%25 identity in 287 aa overlap. Contains Pfam match to entry PF01503 PRA-PH%2C Phosphoribosyl-ATP pyrophosphohydrolase. Contains Pfam match to entry PF01634 HisG%2C ATP phosphoribosyltransferase. Contains PS01316 ATP phosphoribosyltransferase signature.;gbkey=CDS;gene=hisG;product=ATP phosphoribosyltransferase;protein_id=CAC31691.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1562391	1562879	.	+	.	ID=id-hisG;Note=Pfam match to entry PF01634 HisG%2C ATP phosphoribosyltransferase%2C score 258.70%2C E-value 8.1e-74;gbkey=misc_feature;gene=hisG
AL450380.1	EMBL	sequence_feature	1562670	1562735	.	+	.	ID=id-hisG-2;Note=PS01316 ATP phosphoribosyltransferase signature;gbkey=misc_feature;gene=hisG
AL450380.1	EMBL	pseudogene	1563413	1563701	.	+	.	ID=gene-ML1311;Name=ML1311;gbkey=Gene;gene=ML1311;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1563413	1563701	.	+	0	ID=cds-ML1311;Parent=gene-ML1311;Note=Possible pseudogene of M. tuberculosis orthologue Rv2120c (Best blastx score 151);gbkey=CDS;gene=ML1311;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1565153	1566037	.	-	.	ID=gene-ML1312;Name=ML1312;gbkey=Gene;gene=ML1312;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1565153	1566037	.	-	0	ID=cds-CAC31693.1;Parent=gene-ML1312;Dbxref=InterPro:IPR011335,UniProtKB/TrEMBL:Q7AQ72,NCBI_GP:CAC31693.1;Name=CAC31693.1;Note=Highly similar to several proteins of unknown function e.g. Mycobacterium tuberculosis RV2119 TR:O33254 (EMBL:Z97559) (278 aa)%3B Fasta score E(): 0%2C 79.9%25 identity in 278 aa overlap.;gbkey=CDS;gene=ML1312;product=conserved hypothetical protein;protein_id=CAC31693.1;transl_table=11
AL450380.1	EMBL	gene	1566111	1566956	.	+	.	ID=gene-ML1313;Name=ML1313;gbkey=Gene;gene=ML1313;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1566111	1566956	.	+	0	ID=cds-CAC31694.1;Parent=gene-ML1313;Dbxref=GOA:Q7AQ71,InterPro:IPR014816,InterPro:IPR029063,UniProtKB/TrEMBL:Q7AQ71,NCBI_GP:CAC31694.1;Name=CAC31694.1;Note=Highly similar to several proteins of unknown function e.g. Mycobacterium tuberculosis RV2118C TR:O33253 (EMBL:Z97559) (280 aa)%3B Fasta score E(): 0%2C 84.0%25 identity in 281 aa overlap.;gbkey=CDS;gene=ML1313;product=conserved hypothetical protein;protein_id=CAC31694.1;transl_table=11
AL450380.1	EMBL	gene	1567070	1567363	.	-	.	ID=gene-ML1314;Name=ML1314;gbkey=Gene;gene=ML1314;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1567070	1567363	.	-	0	ID=cds-CAC31695.1;Parent=gene-ML1314;Dbxref=InterPro:IPR007546,UniProtKB/TrEMBL:Q7AQ70,NCBI_GP:CAC31695.1;Name=CAC31695.1;Note=Highly similar to several proteins of unknown function e.g. Mycobacterium tuberculosis RV2117 TR:O33252 (EMBL:Z97559) (97 aa)%3B Fasta score E(): 0%2C 85.6%25 identity in 97 aa overlap.;gbkey=CDS;gene=ML1314;product=conserved hypothetical protein;protein_id=CAC31695.1;transl_table=11
AL450380.1	EMBL	gene	1567372	1567956	.	-	.	ID=gene-ML1315;Name=ML1315;gbkey=Gene;gene=ML1315;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1567372	1567956	.	-	0	ID=cds-CAC31696.1;Parent=gene-ML1315;Dbxref=GOA:Q49803,InterPro:IPR020235,NCBI_GP:CAC31696.1;Name=CAC31696.1;Note=Highly similar to Mycobacterium tuberculosis putative lipoprotein LppK (RV2116) SW:LPPK_MYCTU (O33251) (189 aa)%3B Fasta score E(): 1.4e-29%2C 51.6%25 identity in 188 aa overlap. Contains a possible N-terminal signal sequence and an appropriately positioned Prokaryotic membrane lipoprotein lipid attachment site. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=ML1315;product=probable lipoprotein;protein_id=CAC31696.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1567876	1567908	.	-	.	ID=id-ML1315;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=ML1315
AL450380.1	EMBL	gene	1568244	1570073	.	+	.	ID=gene-ML1316;Name=ML1316;gbkey=Gene;gene=ML1316;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1568244	1570073	.	+	0	ID=cds-CAC31697.1;Parent=gene-ML1316;Dbxref=GOA:P46509,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR003960,InterPro:IPR022482,InterPro:IPR027417,NCBI_GP:CAC31697.1;Name=CAC31697.1;Note=Highly similar to many AAA ATPase-family proteins including: Rhodococcus erythropolis ARC protein TR:O50202 (EMBL:AF088800) (591 aa)%3B Fasta score E(): 0%2C 81.8%25 identity in 588 aa overlap%2C Methanococcus jannaschii cell division cycle protein SW:YB56_METJA (Q58556) (903 aa)%3B Fasta score E(): 1.6e-17%2C 46.8%25 identity in 250 aa overlap and Mycobacterium tuberculosis RV2115C SW:YL15_MYCTU (O33250) (609 aa)%3B Fasta score E(): 0%2C 92.8%25 identity in 609 aa overlap. Contains possible coiled-coils between residues 76..98. Contains Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA). Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00674 AAA-protein family signature.;gbkey=CDS;gene=ML1316;product=probable AAA-family ATPase;protein_id=CAC31697.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1569105	1569692	.	+	.	ID=id-ML1316;Note=Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%2C score 248.40%2C E-value 1e-70;gbkey=misc_feature;gene=ML1316
AL450380.1	EMBL	sequence_feature	1569120	1569143	.	+	.	ID=id-ML1316-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1316
AL450380.1	EMBL	sequence_feature	1569468	1569524	.	+	.	ID=id-ML1316-3;Note=PS00674 AAA-protein family signature;gbkey=misc_feature;gene=ML1316
AL450380.1	EMBL	pseudogene	1570095	1570391	.	-	.	ID=gene-ML1317;Name=ML1317;gbkey=Gene;gene=ML1317;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1570095	1570391	.	-	0	ID=cds-ML1317;Parent=gene-ML1317;Note=Possible pseudogene of M. tuberculosis orthologue Rv2114 (Best blastx score 169);gbkey=CDS;gene=ML1317;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1570549	1571554	.	-	.	ID=gene-ML1318;Name=ML1318;gbkey=Gene;gene=ML1318;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1570549	1571554	.	-	0	ID=cds-ML1318;Parent=gene-ML1318;Note=Possible pseudogene of M. tuberculosis orthologue Rv2113 (Best blastx score 211);gbkey=CDS;gene=ML1318;product=possible integral membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1571678	1572939	.	+	.	ID=gene-ML1319;Name=ML1319;gbkey=Gene;gene=ML1319;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1571678	1572939	.	+	0	ID=cds-ML1319;Parent=gene-ML1319;Note=Possible pseudogene of M. tuberculosis orthologue Rv3727;gbkey=CDS;gene=ML1319;product=similar to phytoene dehydrogenase precursor (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	1572915	1573585	.	-	.	ID=id-AL450380.1:1572915..1573585;Note=Dispersed repeat%2C RLEP%2C copy 19;gbkey=repeat_region
AL450380.1	EMBL	sequence_feature	1573107	1573139	.	-	.	ID=id-AL450380.1:1573107..1573139;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature
AL450380.1	EMBL	sequence_feature	1573161	1573193	.	-	.	ID=id-AL450380.1:1573161..1573193;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature
AL450380.1	EMBL	gene	1573917	1575461	.	+	.	ID=gene-ML1320;Name=ML1320;gbkey=Gene;gene=ML1320;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1573917	1575461	.	+	0	ID=cds-CAC31701.1;Parent=gene-ML1320;Dbxref=GOA:Q7AQ69,InterPro:IPR004347,InterPro:IPR022366,UniProtKB/TrEMBL:Q7AQ69,NCBI_GP:CAC31701.1;Name=CAC31701.1;Note=Highly similar to many proteins of undefined function including: Rhodococcus sp. TR:Q53081 (EMBL:U26422) (499 aa)%3B Fasta score E(): 0%2C 83.5%25 identity in 502 aa overlap and Mycobacterium tuberculosis RV2112C TR:O33247 (EMBL:Z97559) (554 aa)%3B Fasta score E(): 0%2C 95.4%25 identity in 504 aa overlap.;gbkey=CDS;gene=ML1320;product=conserved hypothetical protein;protein_id=CAC31701.1;transl_table=11
AL450380.1	EMBL	gene	1575493	1575684	.	+	.	ID=gene-ML1321;Name=ML1321;gbkey=Gene;gene=ML1321;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1575493	1575684	.	+	0	ID=cds-CAC31702.1;Parent=gene-ML1321;Dbxref=GOA:Q9ZBE0,InterPro:IPR008515,NCBI_GP:CAC31702.1;Name=CAC31702.1;Note=Highly similar to many proteins of undefined function found upstream of bacterial proteasome beta subunits including: Mycobacterium smegmatis TR:O30517 (EMBL:AF009645) (64 aa)%3B Fasta score E(): 6.2e-18%2C 82.8%25 identity in 64 aa overlap%2C Rhodococcus sp. TR:Q53082 (EMBL:U26422) (64 aa)%3B Fasta score E(): 6.7e-17%2C 82.8%25 identity in 64 aa overlap and Mycobacterium tuberculosis RV2111C TR:O33246 (EMBL:Z97559) (64 aa)%3B Fasta score E(): 7.9e-19%2C 87.5%25 identity in 64 aa overlap. Note the high number of the amino acids Glu%2C Asp and Gly. Contains a possible coiled-coil region.;gbkey=CDS;gene=ML1321;product=conserved hypothetical protein;protein_id=CAC31702.1;transl_table=11
AL450380.1	EMBL	gene	1575681	1576556	.	+	.	ID=gene-prcB;Name=prcB;gbkey=Gene;gene=prcB;gene_biotype=protein_coding;gene_synonym=ML1322
AL450380.1	EMBL	CDS	1575681	1576556	.	+	0	ID=cds-CAC31703.1;Parent=gene-prcB;Dbxref=GOA:Q49780,InterPro:IPR001353,InterPro:IPR022483,InterPro:IPR023333,InterPro:IPR029055,NCBI_GP:CAC31703.1;Name=CAC31703.1;Note=Highly similar to many proposed 20S proteasome beta subunits (EC 3.4.99.46) including: Methanococcus jannaschii SW:PRCB_METJA (Q58634) (224 aa)%3B Fasta score E(): 0.00015%2C 29.0%25 identity in 183 aa overlap%2C Rhodococcus sp. TR:Q53079 (EMBL:U26421) (294 aa)%3B Fasta score E(): 0%2C 63.5%25 identity in 266 aa overlap and Mycobacterium tuberculosis RV2110C TR:O33245 (EMBL:Z97559) (291 aa)%3B Fasta score E(): 0%2C 81.0%25 identity in 290 aa overlap. Contains Pfam match to entry PF00227 proteasome%2C Proteasome A-type and B-type.;gbkey=CDS;gene=prcB;product=proteasome [beta]-type subunit 2;protein_id=CAC31703.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1575852	1576073	.	+	.	ID=id-prcB;Note=Pfam match to entry PF00227 proteasome%2C Proteasome A-type and B-type%2C score 40.30%2C E-value 9.2e-10;gbkey=misc_feature;gene=prcB
AL450380.1	EMBL	gene	1576553	1577350	.	+	.	ID=gene-prcA;Name=prcA;gbkey=Gene;gene=prcA;gene_biotype=protein_coding;gene_synonym=ML1323
AL450380.1	EMBL	CDS	1576553	1577350	.	+	0	ID=cds-CAC31704.1;Parent=gene-prcA;Dbxref=GOA:Q9S375,InterPro:IPR001353,InterPro:IPR022296,InterPro:IPR023332,InterPro:IPR029055,NCBI_GP:CAC31704.1;Name=CAC31704.1;Note=Highly similar to many proposed 20S proteasome alpha subunits including: Rhodococcus sp. TR:Q53080 (EMBL:U26421) (259 aa)%3B Fasta score E(): 0%2C 65.5%25 identity in 255 aa overlap and Mycobacterium tuberculosis RV2109C TR:O33244 (EMBL:Z97559) (248 aa)%3B Fasta score E(): 0%2C 91.8%25 identity in 244 aa overlap.;gbkey=CDS;gene=prcA;product=proteasome [alpha]-type subunit 1;protein_id=CAC31704.1;transl_table=11
AL450380.1	EMBL	pseudogene	1577417	1577655	.	+	.	ID=gene-ML1324;Name=ML1324;gbkey=Gene;gene=ML1324;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1577417	1577655	.	+	0	ID=cds-ML1324;Parent=gene-ML1324;Note=Possible pseudogene of M. tuberculosis orthologue Rv2104c (Best blastx score 174);gbkey=CDS;gene=ML1324;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1577741	1578178	.	+	.	ID=gene-ML1325;Name=ML1325;gbkey=Gene;gene=ML1325;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1577741	1578178	.	+	0	ID=cds-ML1325;Parent=gene-ML1325;Note=Possible pseudogene of M. tuberculosis orthologue Rv2103c (Best blastx score 404);gbkey=CDS;gene=ML1325;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1578221	1578724	.	-	.	ID=gene-ML1326;Name=ML1326;gbkey=Gene;gene=ML1326;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1578221	1578724	.	-	0	ID=cds-ML1326;Parent=gene-ML1326;Note=Possible pseudogene of M. tuberculosis orthologue Rv2102 (Best blastx score 126);gbkey=CDS;gene=ML1326;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1578930	1579637	.	-	.	ID=gene-ML1327;Name=ML1327;gbkey=Gene;gene=ML1327;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1578930	1579637	.	-	0	ID=cds-ML1327;Parent=gene-ML1327;Note=Possible pseudogene of M. tuberculosis orthologue Rv2100 (Best blastx score 212);gbkey=CDS;gene=ML1327;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1579801	1581159	.	+	.	ID=gene-ML1328;Name=ML1328;gbkey=Gene;gene=ML1328;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1579801	1581159	.	+	0	ID=cds-CAC31709.1;Parent=gene-ML1328;Dbxref=GOA:P54077,InterPro:IPR004347,InterPro:IPR022279,NCBI_GP:CAC31709.1;Name=CAC31709.1;Note=Highly similar to many proteins of unknown function including: Rhodococcus erythropolis TR:P72263 (EMBL:Z82004) (447 aa)%3B Fasta score E(): 0%2C 89.3%25 identity in 447 aa overlap and Mycobacterium tuberculosis Rv2097c SW:YK97_MYCTU (Q10706) (452 aa)%3B Fasta score E(): 0%2C 94.9%25 identity in 452 aa overlap. Contains a probable helix-turn-helix motif at aa 380-401 (Score 1155%2C SD +3.12);gbkey=CDS;gene=ML1328;product=possible DNA-binding protein;protein_id=CAC31709.1;transl_table=11
AL450380.1	EMBL	gene	1581166	1582161	.	+	.	ID=gene-ML1329;Name=ML1329;gbkey=Gene;gene=ML1329;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1581166	1582161	.	+	0	ID=cds-CAC31710.1;Parent=gene-ML1329;Dbxref=InterPro:IPR026881,InterPro:IPR028349,NCBI_GP:CAC31710.1;Name=CAC31710.1;Note=Similar to several proteins of undefined function including: Rhodococcus erythropolis TR:P72264 (EMBL:Z82004) (330 aa)%3B Fasta score E(): 0%2C 57.2%25 identity in 327 aa overlap and Mycobacterium tuberculosis RV2096C SW:YK96_MYCTU (Q10705) (332 aa)%3B Fasta score E(): 0%2C 80.2%25 identity in 329 aa overlap.;gbkey=CDS;gene=ML1329;product=conserved hypothetical protein;protein_id=CAC31710.1;transl_table=11
AL450380.1	EMBL	gene	1582158	1583132	.	+	.	ID=gene-ML1330;Name=ML1330;gbkey=Gene;gene=ML1330;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1582158	1583132	.	+	0	ID=cds-CAC31711.1;Parent=gene-ML1330;Dbxref=InterPro:IPR026881,InterPro:IPR028349,NCBI_GP:CAC31711.1;Name=CAC31711.1;Note=Similar to several including: Bacillus subtilis putative transcriptional regulator TR:O34920 (EMBL:AF027868) (313 aa)%3B Fasta score E(): 3.9e-05%2C 22.2%25 identity in 311 aa overlap and Mycobacterium tuberculosis RV2095C SW:YK95_MYCTU (Q10704) (316 aa)%3B Fasta score E(): 0%2C 74.2%25 identity in 322 aa overlap. Contains a probable helix-turn-helix motif at aa 24-45 (Score 1309%2C SD +3.65);gbkey=CDS;gene=ML1330;product=possible DNA-binding protein;protein_id=CAC31711.1;transl_table=11
AL450380.1	EMBL	gene	1583184	1583471	.	+	.	ID=gene-ML1331;Name=ML1331;gbkey=Gene;gene=ML1331;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1583184	1583471	.	+	0	ID=cds-CAC31712.1;Parent=gene-ML1331;Dbxref=GOA:P54079,InterPro:IPR003369,InterPro:IPR006312,NCBI_GP:CAC31712.1;Name=CAC31712.1;Note=Highly similar to several proteins of undefined function including: Streptomyces coelicolor putative secreted protein TR:Q9RJ68 (EMBL:AL132648) (95 aa)%3B Fasta score E(): 5.1e-09%2C 45.3%25 identity in 86 aa overlap and Mycobacterium tuberculosis RV2094C SW:YK94_MYCTU (Q10703) (83 aa)%3B Fasta score E(): 5.2e-21%2C 68.2%25 identity in 88 aa overlap. Contains a possible N-terminal signal sequence. Note codon 8 may offer an alternative translational start site. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML1331;product=possible secreted protein;protein_id=CAC31712.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1583286	1583309	.	+	.	ID=id-ML1331;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1331
AL450380.1	EMBL	gene	1583610	1584470	.	+	.	ID=gene-ML1332;Name=ML1332;gbkey=Gene;gene=ML1332;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1583610	1584470	.	+	0	ID=cds-CAC31713.1;Parent=gene-ML1332;Dbxref=GOA:P54078,InterPro:IPR002033,InterPro:IPR019820,NCBI_GP:CAC31713.1;Name=CAC31713.1;Note=Similar to many membrane proteins including: Escherichia coli Sec-independent protein translocase protein TatC SW:TATC_ECOLI (AJ005830) (258 aa)%3B Fasta score E(): 1.6e-17%2C 33.0%25 identity in 267 aa overlap and Mycobacterium tuberculosis RV2093C SW:YK93_MYCTU (Q10702) (308 aa)%3B Fasta score E(): 0%2C 86.0%25 identity in 286 aa overlap. Contains multiple possible membrane spanning hydrophobic domains and a possible N-terminal signal sequence. Contains Pfam match to entry PF00902 UPF0032%2C MttB family. Contains PS01218 Uncharacterized protein family UPF0032 signature.;gbkey=CDS;gene=ML1332;product=membrane transport protein;protein_id=CAC31713.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1583643	1584302	.	+	.	ID=id-ML1332;Note=Pfam match to entry PF00902 UPF0032%2C MttB family%2C score 313.30%2C E-value 3e-90;gbkey=misc_feature;gene=ML1332
AL450380.1	EMBL	sequence_feature	1584096	1584155	.	+	.	ID=id-ML1332-2;Note=PS01218 Uncharacterized protein family UPF0032 signature;gbkey=misc_feature;gene=ML1332
AL450380.1	EMBL	gene	1584495	1587257	.	+	.	ID=gene-helY;Name=helY;gbkey=Gene;gene=helY;gene_biotype=protein_coding;gene_synonym=ML1333
AL450380.1	EMBL	CDS	1584495	1587257	.	+	0	ID=cds-CAC31714.1;Parent=gene-helY;Dbxref=GOA:Q9ZBD8,InterPro:IPR001650,InterPro:IPR011545,InterPro:IPR012961,InterPro:IPR014001,InterPro:IPR027417,NCBI_GP:CAC31714.1;Name=CAC31714.1;Note=Highly similar to many proposed Prokaryotic and Eukaryotic helicases including: Mycobacterium tuberculosis RV2092C SW:HELY_MYCTU (Q10701) (906 aa)%3B Fasta score E(): 0%2C 82.5%25 identity in 922 aa overlap and Saccharomyces cerevisiae ATP-dependent RNA helicase Dob1 SW:MTR4_YEAST (P47047) (1073 aa)%3B Fasta score E(): 0%2C 27.2%25 identity in 972 aa overlap. Contains Pfam match to entry PF00270 DEAD%2C DEAD/DEAH box helicase. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=helY;product=probable helicase%2C Ski2 subfamily;protein_id=CAC31714.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1584516	1585088	.	+	.	ID=id-helY;Note=Pfam match to entry PF00270 DEAD%2C DEAD/DEAH box helicase%2C score 112.90%2C E-value 8.7e-35;gbkey=misc_feature;gene=helY
AL450380.1	EMBL	sequence_feature	1584609	1584632	.	+	.	ID=id-helY-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=helY
AL450380.1	EMBL	gene	1587322	1588140	.	+	.	ID=gene-ML1334;Name=ML1334;gbkey=Gene;gene=ML1334;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1587322	1588140	.	+	0	ID=cds-CAC31715.1;Parent=gene-ML1334;Dbxref=InterPro:IPR008160,InterPro:IPR025637,UniProtKB/TrEMBL:Q7AQ65,NCBI_GP:CAC31715.1;Name=CAC31715.1;Note=Highly similar to several e.g. Mycobacterium tuberculosis hypothetical protein RV2091C SW:YK91_MYCTU (Q10700) (244 aa)%3B Fasta score E(): 0%2C 62.9%25 identity in 272 aa overlap. Note the product of this CDS contains a 7xPGQYG(P/S) repeat region similar to several bacterial protein calcium binding domains. Contains a possible membrane spanning hydrophobic domain.;gbkey=CDS;gene=ML1334;product=possible conserved membrane protein;protein_id=CAC31715.1;transl_table=11
AL450380.1	EMBL	repeat_region	1587621	1587764	.	+	.	ID=id-ML1334;Note=8 copies of 18 bp tandem repeat%2C Consensus CGGCCCGCCTGGCCAGTA;gbkey=repeat_region;gene=ML1334
AL450380.1	EMBL	repeat_region	1587625	1587765	.	+	.	ID=id-ML1334-2;Note=region containing 7x(C/T)CGCCTGGCCAGTACGGC and 1xCCGCCTGGCCAGTAC repeats;gbkey=repeat_region;gene=ML1334
AL450380.1	EMBL	pseudogene	1588158	1589091	.	-	.	ID=gene-ML1335;Name=ML1335;gbkey=Gene;gene=ML1335;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1588158	1589091	.	-	0	ID=cds-ML1335;Parent=gene-ML1335;Note=Possible pseudogene of M. tuberculosis orthologue Rv2090 (Best blastx score 363);gbkey=CDS;gene=ML1335;product=partially similar to DNA polymerase I (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1589272	1590271	.	+	.	ID=gene-pepE;Name=pepE;gbkey=Gene;gene=pepE;gene_biotype=pseudogene;gene_synonym=ML1336;pseudo=true
AL450380.1	EMBL	CDS	1589272	1590271	.	+	0	ID=cds-pepE;Parent=gene-pepE;Note=Possible pseudogene of M. tuberculosis orthologue pepE (Best blastx score 243);gbkey=CDS;gene=pepE;product=cytoplasmic peptidase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	1593045	1594078	.	-	.	ID=id-AL450380.1:1593045..1594078;Note=REPLEP region 8%2C 3'-end most similar to REPLEP 10;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	1593172	1593199	.	-	.	ID=id-AL450380.1:1593172..1593199;Note=28 bp subsequence of 45 bp REPLEP-associated sequence;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	1593200	1594078	.	-	.	ID=id-AL450380.1:1593200..1594078;Note=Dispersed repeat%2C REPLEP%2C copy 8;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	1594280	1595034	.	-	.	ID=id-AL450380.1:1594280..1595034;Note=Dispersed repeat%2C RLEP%2C copy 20;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	1595002	1595363	.	-	.	ID=gene-ML1337;Name=ML1337;gbkey=Gene;gene=ML1337;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1595002	1595363	.	-	0	ID=cds-ML1337;Parent=gene-ML1337;Note=Possible pseudogene of M. tuberculosis orthologue Rv2674 (Best blastx score 159);gbkey=CDS;gene=ML1337;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1595449	1596771	.	-	.	ID=gene-ML1338;Name=ML1338;gbkey=Gene;gene=ML1338;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1595449	1596771	.	-	0	ID=cds-CAC31719.1;Parent=gene-ML1338;Dbxref=GOA:Q7AQ64,InterPro:IPR018584,UniProtKB/TrEMBL:Q7AQ64,NCBI_GP:CAC31719.1;Name=CAC31719.1;Note=Similar to several membrane proteins e.g. Mycobacterium tuberculosis RV2673 TR:P71970 (EMBL:Z80225) (433 aa)%3B Fasta score E(): 0%2C 82.0%25 identity in 434 aa overlap and weakly similar to Streptomyces coelicolor TR:Q53873 (EMBL:AL031317) (411 aa)%3B Fasta score E(): 1.1e-12%2C 28.3%25 identity in 410 aa overlap. Contains multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1338;product=possible conserved integral membrane protein;protein_id=CAC31719.1;transl_table=11
AL450380.1	EMBL	gene	1596791	1598368	.	-	.	ID=gene-ML1339;Name=ML1339;gbkey=Gene;gene=ML1339;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1596791	1598368	.	-	0	ID=cds-CAC31720.1;Parent=gene-ML1339;Dbxref=GOA:Q7AQ63,InterPro:IPR013595,InterPro:IPR029058,UniProtKB/TrEMBL:Q7AQ63,NCBI_GP:CAC31720.1;Name=CAC31720.1;Note=Highly similar to several proteases including: Streptomyces lividans TR:Q54399 (EMBL:L42759) (513 aa)%3B Fasta score E(): 2.7e-19%2C 25.7%25 identity in 548 aa overlap and Mycobacterium tuberculosis RV2672 TR:P71969 (EMBL:Z80225) (528 aa)%3B Fasta score E(): 0%2C 74.4%25 identity in 528 aa overlap. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=ML1339;product=putative secreted protease;protein_id=CAC31720.1;transl_table=11
AL450380.1	EMBL	gene	1598382	1599188	.	-	.	ID=gene-ML1340;Name=ML1340;gbkey=Gene;gene=ML1340;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1598382	1599188	.	-	0	ID=cds-CAC31721.1;Parent=gene-ML1340;Dbxref=GOA:Q7AQ62,InterPro:IPR002734,InterPro:IPR024072,UniProtKB/TrEMBL:Q7AQ62,NCBI_GP:CAC31721.1;Name=CAC31721.1;Note=Similar to several including: the C-terminal reductase domains of several riboflavin biosynthetic proteins e.g. Escherichia coli RibD SW:RIBD_ECOLI (X64395) (367 aa)%3B Fasta score E(): 0.0028%2C 23.8%25 identity in 227 aa overlap. Also similar to Mycobacterium tuberculosis RV2671 TR:P71968 (EMBL:Z80225) (258 aa)%3B Fasta score E(): 0%2C 72.9%25 identity in 251 aa overlap. Contains Pfam match to entry PF01872 RibD_C%2C RibD C-terminal domain.;gbkey=CDS;gene=ML1340;product=possible reductase;protein_id=CAC31721.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1598433	1599041	.	-	.	ID=id-ML1340;Note=Pfam match to entry PF01872 RibD_C%2C RibD C-terminal domain%2C score 299.30%2C E-value 4.6e-86;gbkey=misc_feature;gene=ML1340
AL450380.1	EMBL	pseudogene	1599254	1600325	.	+	.	ID=gene-ML1341;Name=ML1341;gbkey=Gene;gene=ML1341;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1599254	1600325	.	+	0	ID=cds-ML1341;Parent=gene-ML1341;Note=Possible pseudogene of M. tuberculosis orthologue Rv2670c (Best blastx score 1011);gbkey=CDS;gene=ML1341;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1600318	1600501	.	-	.	ID=gene-ML1342;Name=ML1342;gbkey=Gene;gene=ML1342;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1600318	1600501	.	-	0	ID=cds-ML1342;Parent=gene-ML1342;Note=Possible pseudogene of M. tuberculosis orthologue Rv2669;gbkey=CDS;gene=ML1342;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1600577	1600658	.	-	.	ID=gene-ML1343;Name=ML1343;gbkey=Gene;gene=ML1343;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1600577	1600658	.	-	0	ID=cds-ML1343;Parent=gene-ML1343;Note=Possible pseudogene of M. tuberculosis orthologue Rv2668;gbkey=CDS;gene=ML1343;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1602376	1602450	.	-	.	ID=gene-valU;Name=valU;gbkey=Gene;gene=valU;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	1602376	1602450	.	-	.	ID=rna-valU;Parent=gene-valU;Note=tRNA Val anticodon GAC%2C Cove score 88.42;gbkey=tRNA;gene=valU;product=tRNA-Val
AL450380.1	EMBL	exon	1602376	1602450	.	-	.	ID=exon-valU-1;Parent=rna-valU;Note=tRNA Val anticodon GAC%2C Cove score 88.42;gbkey=tRNA;gene=valU;product=tRNA-Val
AL450380.1	EMBL	gene	1602465	1602538	.	-	.	ID=gene-cysU;Name=cysU;gbkey=Gene;gene=cysU;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	1602465	1602538	.	-	.	ID=rna-cysU;Parent=gene-cysU;Note=tRNA Cys anticodon GCA%2C Cove score 68.63;gbkey=tRNA;gene=cysU;product=tRNA-Cys
AL450380.1	EMBL	exon	1602465	1602538	.	-	.	ID=exon-cysU-1;Parent=rna-cysU;Note=tRNA Cys anticodon GCA%2C Cove score 68.63;gbkey=tRNA;gene=cysU;product=tRNA-Cys
AL450380.1	EMBL	gene	1602564	1602639	.	-	.	ID=gene-glyT;Name=glyT;gbkey=Gene;gene=glyT;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	1602564	1602639	.	-	.	ID=rna-glyT;Parent=gene-glyT;Note=tRNA Gly anticodon GCC%2C Cove score 89.46;gbkey=tRNA;gene=glyT;product=tRNA-Gly
AL450380.1	EMBL	exon	1602564	1602639	.	-	.	ID=exon-glyT-1;Parent=rna-glyT;Note=tRNA Gly anticodon GCC%2C Cove score 89.46;gbkey=tRNA;gene=glyT;product=tRNA-Gly
AL450380.1	EMBL	gene	1602818	1602892	.	+	.	ID=gene-valT;Name=valT;gbkey=Gene;gene=valT;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	1602818	1602892	.	+	.	ID=rna-valT;Parent=gene-valT;Note=tRNA Val anticodon CAC%2C Cove score 85.25;gbkey=tRNA;gene=valT;product=tRNA-Val
AL450380.1	EMBL	exon	1602818	1602892	.	+	.	ID=exon-valT-1;Parent=rna-valT;Note=tRNA Val anticodon CAC%2C Cove score 85.25;gbkey=tRNA;gene=valT;product=tRNA-Val
AL450380.1	EMBL	gene	1602982	1603242	.	-	.	ID=gene-ML1344;Name=ML1344;gbkey=Gene;gene=ML1344;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1602982	1603242	.	-	0	ID=cds-CAC31725.1;Parent=gene-ML1344;Dbxref=GOA:Q9CC35,InterPro:IPR011010,UniProtKB/TrEMBL:Q9CC35,NCBI_GP:CAC31725.1;Name=CAC31725.1;Note=unknown function%2C weakly similar%2C in parts%2C to several transposases e.g. Synechocystis sp. TR:Q55831 (EMBL:D64004) (259 aa)%3B Fasta score E(): 2.6%2C 28.4%25 identity in 88 aa overlap.;gbkey=CDS;gene=ML1344;product=doubtful CDS;protein_id=CAC31725.1;transl_table=11
AL450380.1	EMBL	pseudogene	1604184	1605801	.	+	.	ID=gene-ML1345;Name=ML1345;gbkey=Gene;gene=ML1345;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1604184	1605801	.	+	0	ID=cds-ML1345;Parent=gene-ML1345;Note=Possible pseudogene of M. tuberculosis orthologue Rv0890c (Best blastx score 327);gbkey=CDS;gene=ML1345;product=transcriptional regulator (LuxR/UhpA family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1606104	1606107	.	+	.	ID=id-AL450380.1:1606104..1606107;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1606113	1609121	.	+	.	ID=gene-ML1346;Name=ML1346;gbkey=Gene;gene=ML1346;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1606113	1609121	.	+	0	ID=cds-CAC31727.1;Parent=gene-ML1346;Dbxref=GOA:Q9CC34,InterPro:IPR000873,InterPro:IPR029058,UniProtKB/TrEMBL:Q9CC34,NCBI_GP:CAC31727.1;Name=CAC31727.1;Note=Similar to many Prokaryotic and Eukaryotic long-chain acyl-CoA synthetases including: Mus musculus SW:VLCS_MOUSE (O35488) (620 aa)%3B Fasta score E(): 1.5e-20%2C 24.7%25 identity in 570 aa overlap and Chromatium vinosum poly-beta-hydroxybutyrate polymerase (EC 2.3.1.-) SW:PHBC_CHRVI (P45370) (355 aa)%3B Fasta score E(): 4.7e-17%2C 28.2%25 identity in 348 aa overlap. Also highly similar to Mycobacterium tuberculosis hypothetical protein RV1683 TR:O33185 (EMBL:Z98268) (999 aa)%3B Fasta score E(): 0%2C 85.6%25 identity in 1002 aa overlap. Contains Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme. Contains PS00120 Lipases.;gbkey=CDS;gene=ML1346;product=possible long-chain acyl-CoA synthase;protein_id=CAC31727.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1606539	1606568	.	+	.	ID=id-ML1346;Note=PS00120 Lipases;gbkey=misc_feature;gene=ML1346
AL450380.1	EMBL	sequence_feature	1607532	1608803	.	+	.	ID=id-ML1346-2;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score -193.50%2C E-value 0.00013;gbkey=misc_feature;gene=ML1346
AL450380.1	EMBL	gene	1609114	1609347	.	+	.	ID=gene-ML1347;Name=ML1347;gbkey=Gene;gene=ML1347;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1609114	1609347	.	+	0	ID=cds-CAC31728.1;Parent=gene-ML1347;Dbxref=InterPro:IPR005651,UniProtKB/TrEMBL:Q9CC33,NCBI_GP:CAC31728.1;Name=CAC31728.1;Note=Highly similar to proteins of unknown function from Mycobacterium tuberculosis RV1684 TR:O33186 (EMBL:Z98268) (74 aa)%3B Fasta score E(): 6.9e-20%2C 70.1%25 identity in 77 aa overlap and Streptomyces coelicolor TR:CAB88911 (EMBL:AL353862) (56 aa)%3B Fasta score E(): 0.0064%2C 48.2%25 identity in 56 aa overlap.;gbkey=CDS;gene=ML1347;product=conserved hypothetical protein;protein_id=CAC31728.1;transl_table=11
AL450380.1	EMBL	pseudogene	1609366	1609924	.	-	.	ID=gene-ML1348;Name=ML1348;gbkey=Gene;gene=ML1348;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1609366	1609924	.	-	0	ID=cds-ML1348;Parent=gene-ML1348;Note=Possible pseudogene of M. tuberculosis orthologue Rv1685c (Best blastx score 335);gbkey=CDS;gene=ML1348;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1609953	1610605	.	-	.	ID=gene-ML1349;Name=ML1349;gbkey=Gene;gene=ML1349;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1609953	1610605	.	-	0	ID=cds-ML1349;Parent=gene-ML1349;Note=Possible pseudogene of M. tuberculosis orthologue Rv1686c (Best blastx score 406);gbkey=CDS;gene=ML1349;product=probable transmembrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1610683	1611369	.	-	.	ID=gene-ML1350;Name=ML1350;gbkey=Gene;gene=ML1350;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1610683	1611369	.	-	0	ID=cds-ML1350;Parent=gene-ML1350;Note=Possible pseudogene of M. tuberculosis orthologue Rv1687c (Best blastx score 515);gbkey=CDS;gene=ML1350;product=probable ABC transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1611520	1612164	.	+	.	ID=gene-ML1351;Name=ML1351;gbkey=Gene;gene=ML1351;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1611520	1612164	.	+	0	ID=cds-CAC31732.1;Parent=gene-ML1351;Dbxref=GOA:O05678,InterPro:IPR003180,InterPro:IPR011034,NCBI_GP:CAC31732.1;Name=CAC31732.1;Note=Similar to several DNA-3-methyladenine glycosylases from both Prokaryotes and Eukaryotes e.g. Bacillus subtilis SW:3MGH_BACSU (P94378) (196 aa)%3B Fasta score E(): 7.7e-13%2C 38.4%25 identity in 185 aa overlap and Arabidopsis thaliana SW:3MG_ARATH (Q39147) (254 aa)%3B Fasta score E(): 1.1e-11%2C 32.0%25 identity in 194 aa overlap. Also highly similar to Mycobacterium tuberculosis RV1688 putative 3-methyladenine DNA glycosylase SW:3MGH_MYCTU (O33190) (203 aa)%3B Fasta score E(): 0%2C 78.3%25 identity in 203 aa overlap. Note codon 12 may offer an alternative translational start site.;gbkey=CDS;gene=ML1351;product=possible 3-methylpurine DNA glycosylase;protein_id=CAC31732.1;transl_table=11
AL450380.1	EMBL	gene	1612175	1613455	.	+	.	ID=gene-tyrS;Name=tyrS;gbkey=Gene;gene=tyrS;gene_biotype=protein_coding;gene_synonym=ML1352
AL450380.1	EMBL	CDS	1612175	1613455	.	+	0	ID=cds-CAC31733.1;Parent=gene-tyrS;Dbxref=GOA:Q49900,InterPro:IPR001412,InterPro:IPR002305,InterPro:IPR002307,InterPro:IPR002942,InterPro:IPR014729,InterPro:IPR024088,InterPro:IPR024107,NCBI_GP:CAC31733.1;Name=CAC31733.1;Note=Highly similar to many tyrosyl-tRNA synthetases (EC 6.1.1.1) including: Bacillus stearothermophilus SW:SYY_BACST (P00952) (419 aa)%3B Fasta score E(): 0%2C 50.2%25 identity in 416 aa overlap and Mycobacterium tuberculosis SW:SYY_MYCTU (O33191) (424 aa)%3B Fasta score E(): 0%2C 83.6%25 identity in 426 aa overlap. Contains Pfam match to entry PF00579 tRNA-synt_1b%2C tRNA synthetases class I (W and Y). Contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature.;gbkey=CDS;gene=tyrS;product=tyrosyl-tRNA synthase;protein_id=CAC31733.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1612277	1612972	.	+	.	ID=id-tyrS;Note=Pfam match to entry PF00579 tRNA-synt_1b%2C tRNA synthetases class I (W and Y)%2C score 321.50%2C E-value 9.7e-93;gbkey=misc_feature;gene=tyrS
AL450380.1	EMBL	sequence_feature	1612295	1612327	.	+	.	ID=id-tyrS-2;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature;gbkey=misc_feature;gene=tyrS
AL450380.1	EMBL	pseudogene	1613457	1614907	.	-	.	ID=gene-ML1353;Name=ML1353;gbkey=Gene;gene=ML1353;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1613457	1614907	.	-	0	ID=cds-ML1353;Parent=gene-ML1353;Note=Possible pseudogene of M. tuberculosis orthologue Rv1376 (Best blastx score 348);gbkey=CDS;gene=ML1353;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1615063	1615295	.	-	.	ID=gene-ML1354;Name=ML1354;gbkey=Gene;gene=ML1354;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1615063	1615295	.	-	0	ID=cds-ML1354;Parent=gene-ML1354;Note=Possible pseudogene of M. tuberculosis orthologue Rv1375 (Best blastx score 110);gbkey=CDS;gene=ML1354;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1616271	1616813	.	+	.	ID=gene-ML1355;Name=ML1355;gbkey=Gene;gene=ML1355;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1616271	1616813	.	+	0	ID=cds-ML1355;Parent=gene-ML1355;Note=Possible pseudogene of M. tuberculosis orthologue Rv1691 (Best blastx score 306);gbkey=CDS;gene=ML1355;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1616889	1617916	.	+	.	ID=gene-ML1356;Name=ML1356;gbkey=Gene;gene=ML1356;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1616889	1617916	.	+	0	ID=cds-ML1356;Parent=gene-ML1356;Note=Possible pseudogene of M. tuberculosis orthologue Rv1692 (Best blastx score 433);gbkey=CDS;gene=ML1356;product=probable hydrolase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1617916	1618101	.	+	.	ID=gene-ML1357;Name=ML1357;gbkey=Gene;gene=ML1357;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1617916	1618101	.	+	0	ID=cds-CAC31738.1;Parent=gene-ML1357;Dbxref=UniProtKB/TrEMBL:Q9CC31,NCBI_GP:CAC31738.1;Name=CAC31738.1;Note=Highly similar to Mycobacterium tuberculosis RV1693 TR:O33195 (EMBL:Z98268) (58 aa)%3B Fasta score E(): 9.7e-13%2C 73.8%25 identity in 61 aa overlap.;gbkey=CDS;gene=ML1357;product=conserved hypothetical protein;protein_id=CAC31738.1;transl_table=11
AL450380.1	EMBL	gene	1618109	1618918	.	+	.	ID=gene-tlyA;Name=tlyA;gbkey=Gene;gene=tlyA;gene_biotype=protein_coding;gene_synonym=ML1358
AL450380.1	EMBL	CDS	1618109	1618918	.	+	0	ID=cds-CAC31739.1;Parent=gene-tlyA;Dbxref=GOA:Q7AQ61,InterPro:IPR002877,InterPro:IPR002942,InterPro:IPR004538,InterPro:IPR029063,UniProtKB/TrEMBL:Q7AQ61,NCBI_GP:CAC31739.1;Name=CAC31739.1;Note=Highly similar to several proposed hemolysins including: Mycobacterium ulcerans TlyA TR:CAB83047 (EMBL:AJ271681) (281 aa)%3B Fasta score E(): 0%2C 81.0%25 identity in 268 aa overlap%2C Treponema hyodysenteriae hemolysin A SW:HLYA_TREHY (Q06803) (240 aa)%3B Fasta score E(): 2.3e-23%2C 34.9%25 identity in 238 aa overlap and Mycobacterium tuberculosis TR:Q50760 (EMBL:X98295) (268 aa)%3B Fasta score E(): 0%2C 78.4%25 identity in 268 aa overlap. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=tlyA;product=cytotoxin/hemolysin;protein_id=CAC31739.1;transl_table=11
AL450380.1	EMBL	gene	1618915	1619850	.	+	.	ID=gene-ML1359;Name=ML1359;gbkey=Gene;gene=ML1359;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1618915	1619850	.	+	0	ID=cds-CAC31740.1;Parent=gene-ML1359;Dbxref=GOA:Q49897,InterPro:IPR002504,InterPro:IPR016064,InterPro:IPR017437,InterPro:IPR017438,NCBI_GP:CAC31740.1;Name=CAC31740.1;Note=Similar to many proteins of undefined function including: Streptomyces coelicolor TR:Q9S219 (EMBL:AL109848) (301 aa)%3B Fasta score E(): 0%2C 54.5%25 identity in 303 aa overlap and Mycobacterium tuberculosis RV1695 SW:YG95_MYCTU (O33196) (307 aa)%3B Fasta score E(): 0%2C 87.9%25 identity in 305 aa overlap. In addition%2C several proteins are similar to a C-terminal region/domain e.g. Escherichia coli hypothetical protein SW:YFJB_ECOLI (P37768) (292 aa)%3B Fasta score E(): 2.6e-17%2C 31.8%25 identity in 236 aa overlap. Contains Pfam match to entry PF01513 DUF15%2C Domain of unknown function.;gbkey=CDS;gene=ML1359;product=conserved hypothetical protein;protein_id=CAC31740.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1618987	1619802	.	+	.	ID=id-ML1359;Note=Pfam match to entry PF01513 DUF15%2C Domain of unknown function%2C score 358.50%2C E-value 7.1e-104;gbkey=misc_feature;gene=ML1359
AL450380.1	EMBL	gene	1619874	1621637	.	+	.	ID=gene-recN;Name=recN;gbkey=Gene;gene=recN;gene_biotype=protein_coding;gene_synonym=ML1360
AL450380.1	EMBL	CDS	1619874	1621637	.	+	0	ID=cds-CAC31741.1;Parent=gene-recN;Dbxref=GOA:Q49896,InterPro:IPR003395,InterPro:IPR004604,InterPro:IPR027417,NCBI_GP:CAC31741.1;Name=CAC31741.1;Note=Highly similar to many recombinational repair protein (RecN) orthologues including: Bacillus subtilis SW:RECN_BACSU (P17894) (576 aa)%3B Fasta score E(): 7.4e-26%2C 30.3%25 identity in 597 aa overlap and Mycobacterium tuberculosis RV1696 TR:O33197 (EMBL:Z98268) (587 aa)%3B Fasta score E(): 0%2C 76.2%25 identity in 589 aa overlap. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=recN;product=recombination and DNA repair;protein_id=CAC31741.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1619958	1619981	.	+	.	ID=id-recN;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=recN
AL450380.1	EMBL	gene	1621823	1623004	.	+	.	ID=gene-ML1361;Name=ML1361;gbkey=Gene;gene=ML1361;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1621823	1623004	.	+	0	ID=cds-CAC31742.1;Parent=gene-ML1361;Dbxref=GOA:Q9CC30,InterPro:IPR007371,InterPro:IPR022215,UniProtKB/TrEMBL:Q9CC30,NCBI_GP:CAC31742.1;Name=CAC31742.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein Rv1697 TR:O33198 (EMBL:Z98268) (393 aa)%3B Fasta score E(): 0%2C 90.6%25 identity in 393 aa overlap. Contains possible membrane spanning hydrophobic domain.;gbkey=CDS;gene=ML1361;product=conserved membrane protein;protein_id=CAC31742.1;transl_table=11
AL450380.1	EMBL	gene	1623026	1623979	.	+	.	ID=gene-ML1362;Name=ML1362;gbkey=Gene;gene=ML1362;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1623026	1623979	.	+	0	ID=cds-CAC31743.1;Parent=gene-ML1362;Dbxref=GOA:Q49894,InterPro:IPR021522,NCBI_GP:CAC31743.1;Name=CAC31743.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein Rv1698. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=ML1362;product=possible conserved secreted protein;protein_id=CAC31743.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1624139	1624144	.	+	.	ID=id-AL450380.1:1624139..1624144;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1624152	1625924	.	+	.	ID=gene-pyrG;Name=pyrG;gbkey=Gene;gene=pyrG;gene_biotype=protein_coding;gene_synonym=ML1363
AL450380.1	EMBL	CDS	1624152	1625924	.	+	0	ID=cds-CAC31744.1;Parent=gene-pyrG;Dbxref=GOA:P53529,InterPro:IPR004468,InterPro:IPR017456,InterPro:IPR017926,InterPro:IPR027417,InterPro:IPR029062,NCBI_GP:CAC31744.1;Name=CAC31744.1;Note=Highly similar to many CTP synthases (EC 6.3.4.2)%2C catalysing the last step in pyrimidine biosynthesis%2C including: Escherichia coli SW:PYRG_ECOLI (P08398) (544 aa)%3B Fasta score E(): 0%2C 50.5%25 identity in 548 aa overlap and Mycobacterium tuberculosis SW:PYRG_MYCTU (P96351) (586 aa)%3B Fasta score E(): 0%2C 89.2%25 identity in 590 aa overlap. Contains Pfam match to entry PF00117 GATase%2C Glutamine amidotransferase class-I. Contains PS00442 Glutamine amidotransferases class-I active site.;gbkey=CDS;gene=pyrG;product=CTP synthase;protein_id=CAC31744.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1625085	1625783	.	+	.	ID=id-pyrG;Note=Pfam match to entry PF00117 GATase%2C Glutamine amidotransferase class-I%2C score 173.80%2C E-value 2.8e-48;gbkey=misc_feature;gene=pyrG
AL450380.1	EMBL	sequence_feature	1625313	1625348	.	+	.	ID=id-pyrG-2;Note=PS00442 Glutamine amidotransferases class-I active site;gbkey=misc_feature;gene=pyrG
AL450380.1	EMBL	pseudogene	1625917	1626529	.	+	.	ID=gene-ML1364;Name=ML1364;gbkey=Gene;gene=ML1364;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1625917	1626529	.	+	0	ID=cds-ML1364;Parent=gene-ML1364;Note=Possible pseudogene of M. tuberculosis orthologue Rv1700 (Best blastx score 554);gbkey=CDS;gene=ML1364;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1626538	1627488	.	+	.	ID=gene-ML1365;Name=ML1365;gbkey=Gene;gene=ML1365;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1626538	1627488	.	+	0	ID=cds-CAC31746.1;Parent=gene-ML1365;Dbxref=GOA:Q49890,InterPro:IPR002104,InterPro:IPR004107,InterPro:IPR010998,InterPro:IPR011010,InterPro:IPR011932,InterPro:IPR013762,InterPro:IPR023009,InterPro:IPR023109,NCBI_GP:CAC31746.1;Name=CAC31746.1;Note=Highly similar to several including: Escherichia coli integrase/recombinase XerD which is involved in site specific recombination%2C SW:XERD_ECOLI (P21891) (298 aa)%3B Fasta score E(): 5.7e-29%2C 40.3%25 identity in 308 aa overlap. Also similar to several other Mycobacterium tuberculosis integrase/recombinases e.g. RV2894C SW:YS94_MYCTU (Q10815) (298 aa)%3B Fasta score E(): 0%2C 42.9%25 identity in 312 aa overlap and RV1701 TR:O33200 (EMBL:Z98268) (311 aa)%3B Fasta score E(): 0%2C 85.9%25 identity in 311 aa overlap. Contains Pfam match to entry PF00589 Phage_integrase%2C 'Phage' integrase family.%3B~Similar to ML1365;gbkey=CDS;gene=ML1365;product=integrase/recombinase;protein_id=CAC31746.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1626886	1627455	.	+	.	ID=id-ML1365;Note=Pfam match to entry PF00589 Phage_integrase%2C 'Phage' integrase family%2C score 189.10%2C E-value 6.9e-53;gbkey=misc_feature;gene=ML1365
AL450380.1	EMBL	pseudogene	1627533	1627724	.	-	.	ID=gene-ML1366;Name=ML1366;gbkey=Gene;gene=ML1366;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1627533	1627724	.	-	0	ID=cds-ML1366;Parent=gene-ML1366;Note=Possible pseudogene of M. tuberculosis orthologue Rv1703c (Best blastx score 219);gbkey=CDS;gene=ML1366;product=putative methyltransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1627820	1627824	.	+	.	ID=id-AL450380.1:1627820..1627824;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1628029	1628892	.	+	.	ID=gene-ML1367;Name=ML1367;gbkey=Gene;gene=ML1367;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1628029	1628892	.	+	0	ID=cds-CAC31748.1;Parent=gene-ML1367;Dbxref=InterPro:IPR002586,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CC29,NCBI_GP:CAC31748.1;Name=CAC31748.1;Note=Similar to several proteins involved in plasmid/chromosome partioning or regulation of sporulation e.g. Neisseria meningitidis ParA family protein TR:CAB83392 (EMBL:AL162752) (257 aa)%3B Fasta score E(): 0%2C 42.1%25 identity in 252 aa overlap and Bacillus subtilis SW:SOJ_BACSU (P37522) (253 aa)%3B Fasta score E(): 0%2C 46.2%25 identity in 247 aa overlap%2C respectively. Also highly similar to Mycobacterium tuberculosis RV1708 TR:O33207 (EMBL:Z98268) (318 aa)%3B Fasta score E(): 0%2C 89.5%25 identity in 286 aa overlap. Contains Pfam match to entry PF00991 ParA%2C ParA family ATPase. Contains Pfam match to entry PF00142 fer4_NifH%2C 4Fe-4S iron sulfur cluster binding proteins%2C NifH/frxC family.;gbkey=CDS;gene=ML1367;product=possible regulatory protein;protein_id=CAC31748.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1628152	1628232	.	+	.	ID=id-ML1367;Note=Pfam match to entry PF00142 fer4_NifH%2C 4Fe-4S iron sulfur cluster binding proteins%2C NifH/frxC family%2C score 17.70%2C E-value 0.00045;gbkey=misc_feature;gene=ML1367
AL450380.1	EMBL	sequence_feature	1628374	1628709	.	+	.	ID=id-ML1367-2;Note=Pfam match to entry PF00991 ParA%2C ParA family ATPase%2C score 141.40%2C E-value 1.6e-38;gbkey=misc_feature;gene=ML1367
AL450380.1	EMBL	gene	1628889	1629695	.	+	.	ID=gene-ML1368;Name=ML1368;gbkey=Gene;gene=ML1368;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1628889	1629695	.	+	0	ID=cds-CAC31749.1;Parent=gene-ML1368;Dbxref=InterPro:IPR003768,UniProtKB/TrEMBL:Q7AQ60,NCBI_GP:CAC31749.1;Name=CAC31749.1;Note=Similar to many proteins of undefined function e.g. Bacillus subtilis SW:YPUG_BACSU (P35154) (251 aa)%3B Fasta score E(): 2e-12%2C 26.0%25 identity in 242 aa overlap and Mycobacterium tuberculosis RV1709 TR:O33208 (EMBL:Z98268) (278 aa)%3B Fasta score E(): 0%2C 78.9%25 identity in 251 aa overlap.;gbkey=CDS;gene=ML1368;product=conserved hypothetical protein;protein_id=CAC31749.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1629729	1629734	.	+	.	ID=id-AL450380.1:1629729..1629734;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1629743	1630438	.	+	.	ID=gene-ML1369;Name=ML1369;gbkey=Gene;gene=ML1369;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1629743	1630438	.	+	0	ID=cds-CAC31750.1;Parent=gene-ML1369;Dbxref=GOA:Q7AQ59,InterPro:IPR005234,InterPro:IPR011991,UniProtKB/TrEMBL:Q7AQ59,NCBI_GP:CAC31750.1;Name=CAC31750.1;Note=Similar to many proteins of undefined function e.g. Streptomyces coelicolor TR:Q9S231 (EMBL:AL109848) (223 aa)%3B Fasta score E(): 0%2C 54.5%25 identity in 187 aa overlap and Mycobacterium tuberculosis RV1710 TR:O33209 (EMBL:Z98268) (231 aa)%3B Fasta score E(): 0%2C 77.9%25 identity in 231 aa overlap.;gbkey=CDS;gene=ML1369;product=conserved hypothetical protein;protein_id=CAC31750.1;transl_table=11
AL450380.1	EMBL	gene	1630435	1631208	.	+	.	ID=gene-ML1370;Name=ML1370;gbkey=Gene;gene=ML1370;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1630435	1631208	.	+	0	ID=cds-CAC31751.1;Parent=gene-ML1370;Dbxref=GOA:O05668,InterPro:IPR000748,InterPro:IPR002942,InterPro:IPR006145,InterPro:IPR018496,InterPro:IPR020103,NCBI_GP:CAC31751.1;Name=CAC31751.1;Note=Highly similar to several pseudouridylate synthases involved in the modification of ribosomal RNA e.g. Bacillus subtilis ribosomal large subunit pseudouridine synthase B SW:RLUB_BACSU (P35159) (229 aa)%3B Fasta score E(): 3.6e-30%2C 42.8%25 identity in 229 aa overlap. Also highly similar to Mycobacterium tuberculosis RV1711 SW:YH11_MYCTU (O33210) (254 aa)%3B Fasta score E(): 0%2C 80.2%25 identity in 257 aa overlap. Contains Pfam match to entry PF01479 S4%2C S4 domain. Contains Pfam match to entry PF00849 PseudoU_synth_2%2C RNA pseudouridylate synthase. Contains PS01149 Rsu family of pseudouridine synthase signature.;gbkey=CDS;gene=ML1370;product=possible pseudouridine synthase;protein_id=CAC31751.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1630483	1630623	.	+	.	ID=id-ML1370;Note=Pfam match to entry PF01479 S4%2C S4 domain%2C score 61.40%2C E-value 1.9e-14;gbkey=misc_feature;gene=ML1370
AL450380.1	EMBL	sequence_feature	1630666	1631076	.	+	.	ID=id-ML1370-2;Note=Pfam match to entry PF00849 PseudoU_synth_2%2C RNA pseudouridylate synthase%2C score 95.00%2C E-value 1.5e-24;gbkey=misc_feature;gene=ML1370
AL450380.1	EMBL	sequence_feature	1630789	1630833	.	+	.	ID=id-ML1370-3;Note=PS01149 Rsu family of pseudouridine synthase signature;gbkey=misc_feature;gene=ML1370
AL450380.1	EMBL	ribosome_entry_site	1631194	1631199	.	+	.	ID=id-ML1370-4;Parent=gene-ML1370;gbkey=regulatory;gene=ML1370;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1631205	1631876	.	+	.	ID=gene-cmk;Name=cmk;gbkey=Gene;gene=cmk;gene_biotype=protein_coding;gene_synonym=ML1371
AL450380.1	EMBL	CDS	1631205	1631876	.	+	0	ID=cds-CAC31752.1;Parent=gene-cmk;Dbxref=GOA:Q49885,InterPro:IPR003136,InterPro:IPR011994,InterPro:IPR027417,NCBI_GP:CAC31752.1;Name=CAC31752.1;Note=Highly similar to several cytidylate kinases (EC 2.7.4.14) including: Bacillus subtilis SW:KCY_BACSU (P38493) (224 aa)%3B Fasta score E(): 1.9e-28%2C 42.7%25 identity in 218 aa overlap and Mycobacterium tuberculosis RV1712TR:O33211 (EMBL:Z98268) (230 aa)%3B Fasta score E(): 0%2C 74.8%25 identity in 222 aa overlap. Contains Pfam match to entry PF02224 Cytidylate_kin%2C Cytidylate kinase. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=cmk;product=cytidylate kinase;protein_id=CAC31752.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1631232	1631255	.	+	.	ID=id-cmk;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=cmk
AL450380.1	EMBL	sequence_feature	1631379	1631843	.	+	.	ID=id-cmk-2;Note=Pfam match to entry PF02224 Cytidylate_kin%2C Cytidylate kinase%2C score 306.00%2C E-value 4.4e-88;gbkey=misc_feature;gene=cmk
AL450380.1	EMBL	gene	1631870	1633258	.	+	.	ID=gene-ML1372;Name=ML1372;gbkey=Gene;gene=ML1372;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1631870	1633258	.	+	0	ID=cds-CAC31753.1;Parent=gene-ML1372;Dbxref=GOA:Q49884,InterPro:IPR005225,InterPro:IPR006073,InterPro:IPR015946,InterPro:IPR016484,InterPro:IPR027417,NCBI_GP:CAC31753.1;Name=CAC31753.1;Note=Highly similar to many proposed Era/ThdF family GTP-binding proteins including: Bacillus subtilis SW:ENGA_BACSU (P50743) (436 aa)%3B Fasta score E(): 0%2C 41.0%25 identity in 434 aa overlap and Mycobacterium tuberculosis RV1713 SW:ENGA_MYCTU (O33212) (463 aa)%3B Fasta score E(): 0%2C 88.6%25 identity in 463 aa overlap. Contains Pfam match to entry PF01926 MMR_HSR1%2C GTPase of unknown function. Contains 2 x PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML1372;product=possible GTP-binding protein;protein_id=CAC31753.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1631963	1631986	.	+	.	ID=id-ML1372;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1372
AL450380.1	EMBL	sequence_feature	1632149	1632928	.	+	.	ID=id-ML1372-2;Note=Pfam match to entry PF01926 MMR_HSR1%2C GTPase of unknown function%2C score 97.90%2C E-value 2e-25;gbkey=misc_feature;gene=ML1372
AL450380.1	EMBL	sequence_feature	1632482	1632505	.	+	.	ID=id-ML1372-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1372
AL450380.1	EMBL	pseudogene	1633387	1634434	.	-	.	ID=gene-ML1373;Name=ML1373;gbkey=Gene;gene=ML1373;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1633387	1634434	.	-	0	ID=cds-ML1373;Parent=gene-ML1373;Note=Possible pseudogene of M. tuberculosis orthologue Rv1945 found within repetitive element belonging to the M. tuberculosis degenerate REP13E12 family (Best blastx score 97);gbkey=CDS;gene=ML1373;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1635163	1635834	.	+	.	ID=gene-ML1374;Name=ML1374;gbkey=Gene;gene=ML1374;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1635163	1635834	.	+	0	ID=cds-ML1374;Parent=gene-ML1374;Note=Possible pseudogene of M. tuberculosis orthologue Rv1716 (Best blastx score 261);gbkey=CDS;gene=ML1374;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1636177	1636912	.	+	.	ID=gene-ML1375;Name=ML1375;gbkey=Gene;gene=ML1375;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1636177	1636912	.	+	0	ID=cds-ML1375;Parent=gene-ML1375;Note=Possible pseudogene of M. tuberculosis orthologue Rv1719 (Best blastx score 433);gbkey=CDS;gene=ML1375;product=transcriptional regulator (IclR family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1638366	1638442	.	+	.	ID=gene-proT;Name=proT;gbkey=Gene;gene=proT;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	1638366	1638442	.	+	.	ID=rna-proT;Parent=gene-proT;Note=tRNA Pro anticodon GGG%2C Cove score 80.45;gbkey=tRNA;gene=proT;product=tRNA-Pro
AL450380.1	EMBL	exon	1638366	1638442	.	+	.	ID=exon-proT-1;Parent=rna-proT;Note=tRNA Pro anticodon GGG%2C Cove score 80.45;gbkey=tRNA;gene=proT;product=tRNA-Pro
AL450380.1	EMBL	pseudogene	1639500	1641267	.	+	.	ID=gene-ML1376;Name=ML1376;gbkey=Gene;gene=ML1376;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1639500	1641267	.	+	0	ID=cds-ML1376;Parent=gene-ML1376;Note=Possible pseudogene of M. tuberculosis orthologue Rv3225c (Best blastx score 314);gbkey=CDS;gene=ML1376;product=probable aminoglycoside 3'-phosphotransferases (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	1641317	1641402	.	-	.	ID=id-AL450380.1:1641317..1641402;Note=86 bp repeat%2C 97%25 identical to region 1428085..1428170;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	1641392	1641857	.	+	.	ID=gene-ML1377;Name=ML1377;gbkey=Gene;gene=ML1377;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1641392	1641857	.	+	0	ID=cds-ML1377;Parent=gene-ML1377;Note=Possible pseudogene of M. tuberculosis orthologue Rv1769 (Best blastx score 218);gbkey=CDS;gene=ML1377;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1641980	1643175	.	+	.	ID=gene-ML1378;Name=ML1378;gbkey=Gene;gene=ML1378;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1641980	1643175	.	+	0	ID=cds-ML1378;Parent=gene-ML1378;Note=Possible pseudogene of M. tuberculosis orthologue Rv1770 (Best blastx score 305);gbkey=CDS;gene=ML1378;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1643192	1644450	.	+	.	ID=gene-ML1379;Name=ML1379;gbkey=Gene;gene=ML1379;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1643192	1644450	.	+	0	ID=cds-ML1379;Parent=gene-ML1379;Note=Possible pseudogene of M. tuberculosis orthologue Rv1771 (Best blastx score 462);gbkey=CDS;gene=ML1379;product=oxidoreductase%2C possible (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1645070	1645633	.	+	.	ID=gene-ML1380;Name=ML1380;gbkey=Gene;gene=ML1380;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1645070	1645633	.	+	0	ID=cds-CAC31761.1;Parent=gene-ML1380;Dbxref=UniProtKB/TrEMBL:Q7AQ58,NCBI_GP:CAC31761.1;Name=CAC31761.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein RV1780 TR:O53931 (EMBL:AL022021) (187 aa)%3B Fasta score E(): 0%2C 82.4%25 identity in 187 aa overlap.;gbkey=CDS;gene=ML1380;product=conserved hypothetical protein;protein_id=CAC31761.1;transl_table=11
AL450380.1	EMBL	repeat_region	1647296	1648235	.	-	.	ID=id-AL450380.1:1647296..1648235;Note=Dispersed repeat%2C RLEP%2C copy 21;gbkey=repeat_region
AL450380.1	EMBL	gene	1648220	1650955	.	-	.	ID=gene-polA;Name=polA;gbkey=Gene;gene=polA;gene_biotype=protein_coding;gene_synonym=ML1381
AL450380.1	EMBL	CDS	1648220	1650955	.	-	0	ID=cds-CAC31762.1;Parent=gene-polA;Dbxref=GOA:P46835,InterPro:IPR001098,InterPro:IPR002298,InterPro:IPR002421,InterPro:IPR002562,InterPro:IPR008918,InterPro:IPR012337,InterPro:IPR018320,InterPro:IPR019760,InterPro:IPR020045,InterPro:IPR020046,InterPro:IPR029060,NCBI_GP:CAC31762.1;Name=CAC31762.1;Note=Highly similar to DNA polymerase I (EC 2.7.7.7) (PolI) from many bacteria including: Escherichia coli SW:DPO1_ECOLI (P00582) (928 aa)%3B Fasta score E(): 0%2C 36.4%25 identity in 945 aa overlap and Mycobacterium tuberculosis RV1629 SW:DPO1_MYCTU (Q07700) (904 aa)%3B Fasta score E(): 0%2C 85.2%25 identity in 901 aa overlap. Previously sequenced SW:DPO1_MYCLE (P46835) (911 aa)%3B Fasta score E(): 0%2C 99.9%25 identity in 911 aa overlap. Contains Pfam match to entry PF01367 5_3_exonuclease%2C 5'-3' exonuclease. Contains Pfam match to entry PF00476 DNA_pol_A%2C DNA polymerase family A. Contains PS00447 DNA polymerase family A signature.;gbkey=CDS;gene=polA;product=DNA polymerase I;protein_id=CAC31762.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1648334	1648966	.	-	.	ID=id-polA;Note=Pfam match to entry PF00476 DNA_pol_A%2C DNA polymerase family A%2C score 365.70%2C E-value 4.9e-106;gbkey=misc_feature;gene=polA
AL450380.1	EMBL	sequence_feature	1648691	1648750	.	-	.	ID=id-polA-2;Note=PS00447 DNA polymerase family A signature;gbkey=misc_feature;gene=polA
AL450380.1	EMBL	sequence_feature	1650059	1650916	.	-	.	ID=id-polA-3;Note=Pfam match to entry PF01367 5_3_exonuclease%2C 5'-3' exonuclease%2C score 588.30%2C E-value 4.7e-173;gbkey=misc_feature;gene=polA
AL450380.1	EMBL	repeat_region	1650962	1652036	.	+	.	ID=id-AL450380.1:1650962..1652036;Note=Dispersed repeat%2C RLEP%2C copy 22;gbkey=repeat_region
AL450380.1	EMBL	gene	1652728	1654173	.	+	.	ID=gene-rpsA;Name=rpsA;gbkey=Gene;gene=rpsA;gene_biotype=protein_coding;gene_synonym=ML1382
AL450380.1	EMBL	CDS	1652728	1654173	.	+	0	ID=cds-CAC31763.1;Parent=gene-rpsA;Dbxref=GOA:P46836,InterPro:IPR000110,InterPro:IPR003029,InterPro:IPR012340,InterPro:IPR022967,NCBI_GP:CAC31763.1;Name=CAC31763.1;Note=Highly similar to multiple 30S ribosomal proteins S1 including: Escherichia coli SW:RS1_ECOLI (P02349) (557 aa)%3B Fasta score E(): 0%2C 39.1%25 identity in 471 aa overlap and Mycobacterium tuberculosis Rv1630 SW:RS1_MYCTU (O06147) (481 aa)%3B Fasta score E(): 0%2C 93.8%25 identity in 481 aa overlap. Previously sequenced SW:RS1_MYCLE (P46836) (482 aa)%3B Fasta score E(): 0%2C 93.2%25 identity in 483 aa overlap. Contains 4 Pfam matches to entry PF00575 S1%2C S1 RNA binding domain.;gbkey=CDS;gene=rpsA;product=30S ribosomal protein S1;protein_id=CAC31763.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1652821	1653042	.	+	.	ID=id-rpsA;Note=Pfam match to entry PF00575 S1%2C S1 RNA binding domain%2C score 83.50%2C E-value 2e-21;gbkey=misc_feature;gene=rpsA
AL450380.1	EMBL	sequence_feature	1653082	1653291	.	+	.	ID=id-rpsA-2;Note=Pfam match to entry PF00575 S1%2C S1 RNA binding domain%2C score 74.00%2C E-value 8.3e-19;gbkey=misc_feature;gene=rpsA
AL450380.1	EMBL	sequence_feature	1653340	1653558	.	+	.	ID=id-rpsA-3;Note=Pfam match to entry PF00575 S1%2C S1 RNA binding domain%2C score 117.90%2C E-value 1.9e-31;gbkey=misc_feature;gene=rpsA
AL450380.1	EMBL	sequence_feature	1653595	1653816	.	+	.	ID=id-rpsA-4;Note=Pfam match to entry PF00575 S1%2C S1 RNA binding domain%2C score 111.00%2C E-value 2.3e-29;gbkey=misc_feature;gene=rpsA
AL450380.1	EMBL	gene	1654200	1655432	.	+	.	ID=gene-ML1383;Name=ML1383;gbkey=Gene;gene=ML1383;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1654200	1655432	.	+	0	ID=cds-CAC31764.1;Parent=gene-ML1383;Dbxref=GOA:Q50178,InterPro:IPR001977,InterPro:IPR007344,InterPro:IPR027417,NCBI_GP:CAC31764.1;Name=CAC31764.1;Note=Highly similar to many proteins of undefined function e.g. Mycobacterium tuberculosis Rv1631 SW:YG31_MYCTU (O06148) (407 aa)%3B Fasta score E(): 0%2C 77.5%25 identity in 409 aa overlap. Contains Pfam match to entry PF01121 UPF0038%2C Uncharacterized protein family UPF0038. Contains PS01294 Uncharacterized protein family UPF0038 signature.;gbkey=CDS;gene=ML1383;product=conserved hypothetical protein;protein_id=CAC31764.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1654203	1654739	.	+	.	ID=id-ML1383;Note=Pfam match to entry PF01121 UPF0038%2C Uncharacterized protein family UPF0038%2C score 335.80%2C E-value 4.9e-97;gbkey=misc_feature;gene=ML1383
AL450380.1	EMBL	sequence_feature	1654383	1654472	.	+	.	ID=id-ML1383-2;Note=PS01294 Uncharacterized protein family UPF0038 signature;gbkey=misc_feature;gene=ML1383
AL450380.1	EMBL	gene	1656225	1656563	.	+	.	ID=gene-ML1384;Name=ML1384;gbkey=Gene;gene=ML1384;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1656225	1656563	.	+	0	ID=cds-CAC31765.1;Parent=gene-ML1384;Dbxref=UniProtKB/TrEMBL:Q9CC28,NCBI_GP:CAC31765.1;Name=CAC31765.1;Note=unknown function.;gbkey=CDS;gene=ML1384;product=hypothetical protein;protein_id=CAC31765.1;transl_table=11
AL450380.1	EMBL	pseudogene	1656690	1659190	.	-	.	ID=gene-ML1385;Name=ML1385;gbkey=Gene;gene=ML1385;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1656690	1659190	.	-	0	ID=cds-ML1385;Parent=gene-ML1385;Note=Possible pseudogene of M. tuberculosis orthologue Rv1747 (Best blastx score 280);gbkey=CDS;gene=ML1385;product=ABC transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1659696	1660589	.	+	.	ID=gene-pknF;Name=pknF;gbkey=Gene;gene=pknF;gene_biotype=pseudogene;gene_synonym=ML1386;pseudo=true
AL450380.1	EMBL	CDS	1659696	1660589	.	+	0	ID=cds-pknF;Parent=gene-pknF;Note=Possible pseudogene of M. tuberculosis orthologue pknF (Best blastx score 407);gbkey=CDS;gene=pknF;product=serine-threonine protein kinase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1661656	1661661	.	+	.	ID=id-AL450380.1:1661656..1661661;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1661665	1663761	.	+	.	ID=gene-uvrB;Name=uvrB;gbkey=Gene;gene=uvrB;gene_biotype=protein_coding;gene_synonym=ML1387
AL450380.1	EMBL	CDS	1661665	1663761	.	+	0	ID=cds-CAC31768.1;Parent=gene-uvrB;Dbxref=GOA:P57991,InterPro:IPR001650,InterPro:IPR001943,InterPro:IPR004807,InterPro:IPR006935,InterPro:IPR014001,InterPro:IPR024759,InterPro:IPR027417,NCBI_GP:CAC31768.1;Name=CAC31768.1;Note=Highly similar to many excinucleases ABC (subunit B)%2C involved in DNA repair following UV damage%2C including: Micrococcus luteus SW:UVRB_MICLU (P10125) (709 aa)%3B Fasta score E(): 0%2C 71.4%25 identity in 700 aa overlap and Mycobacterium tuberculosis RV1633 SW:UVRB_MYCTU (O06150) (698 aa)%3B Fasta score E(): 0%2C 94.7%25 identity in 698 aa overlap. Contains Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain. Contains Pfam match to entry PF00270 DEAD%2C DEAD/DEAH box helicase. Contains Pfam match to entry PF02151 UVR%2C UvrB/uvrC motif. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=uvrB;product=excinuclease ABC subunit B;protein_id=CAC31768.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1661677	1661904	.	+	.	ID=id-uvrB;Note=Pfam match to entry PF00270 DEAD%2C DEAD/DEAH box helicase%2C score 19.80%2C E-value 2.2e-05;gbkey=misc_feature;gene=uvrB
AL450380.1	EMBL	sequence_feature	1661785	1661808	.	+	.	ID=id-uvrB-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=uvrB
AL450380.1	EMBL	sequence_feature	1663045	1663305	.	+	.	ID=id-uvrB-3;Note=Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain%2C score 67.10%2C E-value 3.8e-16;gbkey=misc_feature;gene=uvrB
AL450380.1	EMBL	sequence_feature	1663621	1663728	.	+	.	ID=id-uvrB-4;Note=Pfam match to entry PF02151 UVR%2C UvrB/uvrC motif%2C score 50.50%2C E-value 3.6e-11;gbkey=misc_feature;gene=uvrB
AL450380.1	EMBL	pseudogene	1663847	1665179	.	+	.	ID=gene-ML1388;Name=ML1388;gbkey=Gene;gene=ML1388;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1663847	1665179	.	+	0	ID=cds-ML1388;Parent=gene-ML1388;Note=Possible pseudogene of M. tuberculosis orthologue Rv1634 (Best blastx score 456);gbkey=CDS;gene=ML1388;product=probable drug efflux protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1665174	1666757	.	-	.	ID=gene-ML1389;Name=ML1389;gbkey=Gene;gene=ML1389;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1665174	1666757	.	-	0	ID=cds-CAC31770.1;Parent=gene-ML1389;Dbxref=UniProtKB/TrEMBL:Q9CC27,NCBI_GP:CAC31770.1;Name=CAC31770.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein RV1635C TR:O06152 (EMBL:Z95554) (556 aa)%3B Fasta score E(): 0%2C 71.6%25 identity in 528 aa overlap. Contains multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1389;product=conserved membrane protein;protein_id=CAC31770.1;transl_table=11
AL450380.1	EMBL	gene	1667049	1667492	.	+	.	ID=gene-ML1390;Name=ML1390;gbkey=Gene;gene=ML1390;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1667049	1667492	.	+	0	ID=cds-CAC31771.1;Parent=gene-ML1390;Dbxref=GOA:Q9CC26,InterPro:IPR006015,InterPro:IPR006016,InterPro:IPR014729,UniProtKB/TrEMBL:Q9CC26,NCBI_GP:CAC31771.1;Name=CAC31771.1;Note=Highly similar to several proteins of undefined function e.g. Mycobacterium tuberculosis RV1636 TR:O06153 (EMBL:Z95554) (146 aa)%3B Fasta score E(): 0%2C 89.0%25 identity in 146 aa overlap and Neisseria meningitidis TR:AAF41856 (EMBL:AE002499) (154 aa)%3B Fasta score E(): 1.7e-07%2C 32.4%25 identity in 148 aa overlap. Contains Pfam match to entry PF00582 Usp%2C Universal stress protein family.;gbkey=CDS;gene=ML1390;product=conserved hypothetical protein;protein_id=CAC31771.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1667115	1667477	.	+	.	ID=id-ML1390;Note=Pfam match to entry PF00582 Usp%2C Universal stress protein family%2C score 31.70%2C E-value 1.7e-05;gbkey=misc_feature;gene=ML1390
AL450380.1	EMBL	gene	1667501	1668199	.	-	.	ID=gene-ML1391;Name=ML1391;gbkey=Gene;gene=ML1391;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1667501	1668199	.	-	0	ID=cds-CAC31772.1;Parent=gene-ML1391;Dbxref=InterPro:IPR001279,UniProtKB/TrEMBL:Q9CC25,NCBI_GP:CAC31772.1;Name=CAC31772.1;Note=Similar to several including: Streptomyces coelicolor putative hydrolase TR:Q9Z505 (EMBL:AL035591) (218 aa)%3B Fasta score E(): 0%2C 50.9%25 identity in 224 aa overlap and in parts to Rhodopseudomonas blastica probable hydroxyacylglutathione hydrolase SW:GLO2_RHOBL (P05446) (255 aa)%3B Fasta score E(): 2.4e-08%2C 37.9%25 identity in 145 aa overlap. Also similar to Mycobacterium tuberculosis hypothetical protein RV1637CTR:O06154 (EMBL:Z95554) (264 aa)%3B Fasta score E(): 0%2C 84.0%25 identity in 231 aa overlap. Contains Pfam match to entry PF00753 lactamase_B%2C Metallo-beta-lactamase superfamily.;gbkey=CDS;gene=ML1391;product=conserved hypothetical protein;protein_id=CAC31772.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1667567	1668097	.	-	.	ID=id-ML1391;Note=Pfam match to entry PF00753 lactamase_B%2C Metallo-beta-lactamase superfamily%2C score 129.90%2C E-value 4.6e-35;gbkey=misc_feature;gene=ML1391
AL450380.1	EMBL	ribosome_entry_site	1668327	1668330	.	+	.	ID=id-AL450380.1:1668327..1668330;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1668337	1671246	.	+	.	ID=gene-uvrA;Name=uvrA;gbkey=Gene;gene=uvrA;gene_biotype=protein_coding;gene_synonym=ML1392
AL450380.1	EMBL	CDS	1668337	1671246	.	+	0	ID=cds-CAC31773.1;Parent=gene-uvrA;Dbxref=GOA:Q9CC24,InterPro:IPR003439,InterPro:IPR004602,InterPro:IPR013815,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAC31773.1;Name=CAC31773.1;Note=Highly similar to many excinucleases ABC (subunit A)%2C involved in DNA repair following UV damage%2C including: Micrococcus luteus SW:UVRA_MICLU (P13567) (992 aa)%3B Fasta score E(): 0%2C 69.3%25 identity in 966 aa overlap and Mycobacterium tuberculosis RV1638 SW:UVRA_MYCTU (P94972) (972 aa)%3B Fasta score E(): 0%2C 90.9%25 identity in 975 aa overlap. Contains 2 Pfam matches to entry PF00005 ABC_tran%2C ABC transporter. Contains 2 x PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=uvrA;product=excinuclease ABC subunit A;protein_id=CAC31773.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1668409	1670061	.	+	.	ID=id-uvrA;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 14.40%2C E-value 1.8e-06;gbkey=misc_feature;gene=uvrA
AL450380.1	EMBL	sequence_feature	1668430	1668453	.	+	.	ID=id-uvrA-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=uvrA
AL450380.1	EMBL	sequence_feature	1670269	1671084	.	+	.	ID=id-uvrA-3;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 125.60%2C E-value 9.1e-34;gbkey=misc_feature;gene=uvrA
AL450380.1	EMBL	sequence_feature	1670290	1670313	.	+	.	ID=id-uvrA-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=uvrA
AL450380.1	EMBL	gene	1671923	1675042	.	-	.	ID=gene-lysX;Name=lysX;gbkey=Gene;gene=lysX;gene_biotype=protein_coding;gene_synonym=ML1393
AL450380.1	EMBL	CDS	1671923	1675042	.	-	0	ID=cds-CAC31774.1;Parent=gene-lysX;Dbxref=GOA:Q9CC23,InterPro:IPR002313,InterPro:IPR004364,InterPro:IPR004365,InterPro:IPR006195,InterPro:IPR012340,InterPro:IPR018149,InterPro:IPR018150,InterPro:IPR024320,NCBI_GP:CAC31774.1;Name=CAC31774.1;Note=The C-terminal region of the predicted product of this CDS is highly similar to many lysyl-tRNA synthetases (EC 6.1.1.6) including Haemophilus influenzae SW:SYK_HAEIN (P43825) (502 aa)%3B Fasta score E(): 0%2C 40.1%25 identity in 504 aa overlap. The N-terminus is similar to several proposed membrane proteins e.g. Streptomyces coelicolor TR:O69916 (EMBL:AL023861) (589 aa)%3B Fasta score E(): 0%2C 47.8%25 identity in 510 aa overlap. This unusual protein is conserved in Mycobacterium tuberculosis RV1640C TR:P94974 (EMBL:Z85982) (1172 aa)%3B Fasta score E(): 0%2C 82.0%25 identity in 1041 aa overlap. Contains multiple possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF00152 tRNA-synt_2%2C tRNA synthetases class II (D%2C K and N). Contains PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2. Contains PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.%3B~C-terminal similar to ML0233;gbkey=CDS;gene=lysX;product=C-term lysyl-tRNA synthase;protein_id=CAC31774.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1671929	1672981	.	-	.	ID=id-lysX;Note=Pfam match to entry PF00152 tRNA-synt_2%2C tRNA synthetases class II (D%2C K and N)%2C score 339.30%2C E-value 4.3e-98;gbkey=misc_feature;gene=lysX
AL450380.1	EMBL	sequence_feature	1671980	1672009	.	-	.	ID=id-lysX-2;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2;gbkey=misc_feature;gene=lysX
AL450380.1	EMBL	sequence_feature	1672628	1672681	.	-	.	ID=id-lysX-3;Note=PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1;gbkey=misc_feature;gene=lysX
AL450380.1	EMBL	gene	1675807	1676364	.	+	.	ID=gene-InfC;Name=InfC;gbkey=Gene;gene=InfC;gene_biotype=protein_coding;gene_synonym=ML1394
AL450380.1	EMBL	CDS	1675807	1676364	.	+	0	ID=cds-CAC31775.1;Parent=gene-InfC;Dbxref=GOA:Q9CC22,InterPro:IPR001288,InterPro:IPR019813,InterPro:IPR019814,InterPro:IPR019815,NCBI_GP:CAC31775.1;Name=CAC31775.1;Note=Highly similar to many translation initiation factors (3) including: Neisseria meningitidis TR:AAF41134 (EMBL:AE002426) (155 aa)%3B Fasta score E(): 3.8e-28%2C 48.7%25 identity in 152 aa overlap%2C Bacillus subtilis SW:IF3_BACSU (P55872) (171 aa)%3B Fasta score E(): 1.4e-26%2C 48.7%25 identity in 150 aa overlap and Mycobacterium tuberculosis RV1641 SW:IF3_MYCTU (P94975) (201 aa)%3B Fasta score E(): 0%2C 89.2%25 identity in 185 aa overlap. Contains Pfam match to entry PF00707 IF3%2C Translation initiation factor IF-3. Contains PS00938 Initiation factor 3 signature.;gbkey=CDS;gene=InfC;product=initiation factor 3;protein_id=CAC31775.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1675867	1676262	.	+	.	ID=id-InfC;Note=Pfam match to entry PF00707 IF3%2C Translation initiation factor IF-3%2C score 294.40%2C E-value 1e-97;gbkey=misc_feature;gene=InfC
AL450380.1	EMBL	sequence_feature	1675927	1675968	.	+	.	ID=id-InfC-2;Note=PS00938 Initiation factor 3 signature;gbkey=misc_feature;gene=InfC
AL450380.1	EMBL	gene	1676415	1676609	.	+	.	ID=gene-rpmI;Name=rpmI;gbkey=Gene;gene=rpmI;gene_biotype=protein_coding;gene_synonym=ML1395
AL450380.1	EMBL	CDS	1676415	1676609	.	+	0	ID=cds-CAC31776.1;Parent=gene-rpmI;Dbxref=GOA:Q9CC21,InterPro:IPR001706,InterPro:IPR018265,InterPro:IPR021137,NCBI_GP:CAC31776.1;Name=CAC31776.1;Note=Highly similar to many 50s ribosomal L35 proteins%2C including: Escherichia coli SW:RL35_ECOLI (P07085) (64 aa)%3B Fasta score E(): 2.3e-05%2C 43.4%25 identity in 53 aa overlap and Mycobacterium tuberculosis RV1642 SW:RL35_MYCTU (P94976) (64 aa)%3B Fasta score E(): 1.6e-24%2C 90.6%25 identity in 64 aa overlap. Contains Pfam match to entry PF01632 Ribosomal_L35p%2C Ribosomal protein L35.;gbkey=CDS;gene=rpmI;product=50S ribosomal protein L35;protein_id=CAC31776.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1676424	1676600	.	+	.	ID=id-rpmI;Note=Pfam match to entry PF01632 Ribosomal_L35p%2C Ribosomal protein L35%2C score 105.70%2C E-value 9e-28;gbkey=misc_feature;gene=rpmI
AL450380.1	EMBL	gene	1676663	1677052	.	+	.	ID=gene-rplT;Name=rplT;gbkey=Gene;gene=rplT;gene_biotype=protein_coding;gene_synonym=ML1396
AL450380.1	EMBL	CDS	1676663	1677052	.	+	0	ID=cds-CAC31777.1;Parent=gene-rplT;Dbxref=GOA:Q9CC20,InterPro:IPR005813,NCBI_GP:CAC31777.1;Name=CAC31777.1;Note=Highly similar to many 50s ribosomal L20 proteins%2C including: Escherichia coli SW:RL20_ECOLI (P02421) (117 aa)%3B Fasta score E(): 1.9e-23%2C 57.8%25 identity in 116 aa overlap and Mycobacterium tuberculosis RV1643 SW:RL20_MYCTU (P94977) (129 aa)%3B Fasta score E(): 0%2C 90.7%25 identity in 129 aa overlap. Contains Pfam match to entry PF00453 Ribosomal_L20%2C Ribosomal protein L20. Contains PS00937 Ribosomal protein L20 signature.;gbkey=CDS;gene=rplT;product=50S ribosomal protein L20;protein_id=CAC31777.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1676666	1676989	.	+	.	ID=id-rplT;Note=Pfam match to entry PF00453 Ribosomal_L20%2C Ribosomal protein L20%2C score 151.50%2C E-value 3.5e-47;gbkey=misc_feature;gene=rplT
AL450380.1	EMBL	sequence_feature	1676822	1676872	.	+	.	ID=id-rplT-2;Note=PS00937 Ribosomal protein L20 signature;gbkey=misc_feature;gene=rplT
AL450380.1	EMBL	gene	1677107	1677886	.	+	.	ID=gene-tsnR;Name=tsnR;gbkey=Gene;gene=tsnR;gene_biotype=protein_coding;gene_synonym=ML1397
AL450380.1	EMBL	CDS	1677107	1677886	.	+	0	ID=cds-CAC31778.1;Parent=gene-tsnR;Dbxref=GOA:Q9CC19,InterPro:IPR001537,InterPro:IPR013123,InterPro:IPR029026,InterPro:IPR029028,InterPro:IPR029064,UniProtKB/TrEMBL:Q9CC19,NCBI_GP:CAC31778.1;Name=CAC31778.1;Note=Similar to several proposed rRNA methylases (SpoU family) e.g. Mycobacterium tuberculosis Rv1644 TR:P94978 (EMBL:Z85982) (260 aa)%3B Fasta score E(): 0%2C 72.8%25 identity in 257 aa overlap and Escherichia coli SW:TRMH_ECOLI (P19396) (1436 aa)%3B BlastP Expect 7.5. Contains Pfam match to entry PF00588 SpoU_methylase%2C SpoU rRNA Methylase family.;gbkey=CDS;gene=tsnR;product=putative rRNA methyltransferase;protein_id=CAC31778.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1677428	1677859	.	+	.	ID=id-tsnR;Note=Pfam match to entry PF00588 SpoU_methylase%2C SpoU rRNA Methylase family%2C score 112.60%2C E-value 7.8e-30;gbkey=misc_feature;gene=tsnR
AL450380.1	EMBL	pseudogene	1678043	1679054	.	-	.	ID=gene-ML1398;Name=ML1398;gbkey=Gene;gene=ML1398;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1678043	1679054	.	-	0	ID=cds-ML1398;Parent=gene-ML1398;Note=Possible pseudogene of M. tuberculosis orthologue Rv1645c (Best blastx score 740);gbkey=CDS;gene=ML1398;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1679214	1680188	.	+	.	ID=gene-ML1399;Name=ML1399;gbkey=Gene;gene=ML1399;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1679214	1680188	.	+	0	ID=cds-CAC31780.1;Parent=gene-ML1399;Dbxref=GOA:Q9CC18,InterPro:IPR001054,InterPro:IPR029787,UniProtKB/TrEMBL:Q9CC18,NCBI_GP:CAC31780.1;Name=CAC31780.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein RV1647 TR:P94982 (EMBL:Z85982) (316 aa)%3B Fasta score E(): 0%2C 74.0%25 identity in 312 aa overlap.;gbkey=CDS;gene=ML1399;product=conserved hypothetical protein;protein_id=CAC31780.1;transl_table=11
AL450380.1	EMBL	pseudogene	1680232	1680655	.	+	.	ID=gene-ML1400;Name=ML1400;gbkey=Gene;gene=ML1400;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1680232	1680655	.	+	0	ID=cds-ML1400;Parent=gene-ML1400;Note=Possible pseudogene of M. tuberculosis orthologue Rv1648 (Best blastx score 139);gbkey=CDS;gene=ML1400;product=possible membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1681020	1681025	.	+	.	ID=id-AL450380.1:1681020..1681025;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1681037	1682089	.	+	.	ID=gene-pheS;Name=pheS;gbkey=Gene;gene=pheS;gene_biotype=protein_coding;gene_synonym=ML1401
AL450380.1	EMBL	CDS	1681037	1682089	.	+	0	ID=cds-CAC30352.1;Parent=gene-pheS;Dbxref=GOA:Q9CC17,InterPro:IPR002319,InterPro:IPR004188,InterPro:IPR004529,InterPro:IPR006195,InterPro:IPR010978,InterPro:IPR022911,NCBI_GP:CAC30352.1;Name=CAC30352.1;Note=Highly similar to many phenylalanyl-tRNA synthetase alpha chains including: Escherichia coli SW:SYFA_ECOLI (P08312) (327 aa)%3B Fasta score E(): 0%2C 45.9%25 identity in 331 aa overlap and Mycobacterium tuberculosis RV1649 TR:P94984 (EMBL:Z85982) (341 aa)%3B Fasta score E(): 0%2C 85.0%25 identity in 341 aa overlap. Contains Pfam match to entry PF01409 tRNA-synt_2d%2C tRNA synthetases class II (F). Contains PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.;gbkey=CDS;gene=pheS;product=phenylalanyl-tRNA synthase [alpha] subunit;protein_id=CAC30352.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1681391	1682035	.	+	.	ID=id-pheS;Note=Pfam match to entry PF01409 tRNA-synt_2d%2C tRNA synthetases class II (F)%2C score 356.00%2C E-value 3.9e-103;gbkey=misc_feature;gene=pheS
AL450380.1	EMBL	sequence_feature	1681661	1681714	.	+	.	ID=id-pheS-2;Note=PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1;gbkey=misc_feature;gene=pheS
AL450380.1	EMBL	gene	1682086	1684596	.	+	.	ID=gene-pheT;Name=pheT;gbkey=Gene;gene=pheT;gene_biotype=protein_coding;gene_synonym=ML1402
AL450380.1	EMBL	CDS	1682086	1684596	.	+	0	ID=cds-CAC30353.1;Parent=gene-pheT;Dbxref=GOA:Q9CC16,InterPro:IPR002547,InterPro:IPR004532,InterPro:IPR005121,InterPro:IPR005146,InterPro:IPR005147,InterPro:IPR009061,InterPro:IPR012340,InterPro:IPR020825,NCBI_GP:CAC30353.1;Name=CAC30353.1;Note=Highly similar to many phenylalanyl-tRNA synthetase beta chains including: Escherichia coli SW:SYFB_ECOLI (P07395) (795 aa)%3B Fasta score E(): 0%2C 31.0%25 identity in 851 aa overlap and Mycobacterium tuberculosis RV1649 SW:SYFB_MYCTU (P94985) (831 aa)%3B Fasta score E(): 0%2C 79.6%25 identity in 834 aa overlap.;gbkey=CDS;gene=pheT;product=phenylalanyl-tRNA synthase [beta] subunit;protein_id=CAC30353.1;transl_table=11
AL450380.1	EMBL	pseudogene	1684762	1685398	.	+	.	ID=gene-PE-4;Name=PE;gbkey=Gene;gene=PE;gene_biotype=pseudogene;gene_synonym=ML1403;pseudo=true
AL450380.1	EMBL	CDS	1684762	1685398	.	+	0	ID=cds-PE-3;Parent=gene-PE-4;Note=Possible pseudogene of M. tuberculosis orthologue PE (Best blastx score 230);gbkey=CDS;gene=PE;product=PE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1686374	1687122	.	-	.	ID=gene-ML1404;Name=ML1404;gbkey=Gene;gene=ML1404;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1686374	1687122	.	-	0	ID=cds-ML1404;Parent=gene-ML1404;Note=Similar to many transposases e.g. Rhodococcus sp. TR:Q53052%2C Mycobacterium smegmatis SW:TRA0_MYCSM (carried on IS6120) and Mycobacterium avium TR:Q9ZA68 (carried on IS666).;gbkey=CDS;gene=ML1404;product=transposase(pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1687133	1687459	.	-	.	ID=gene-ML1405;Name=ML1405;gbkey=Gene;gene=ML1405;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1687133	1687459	.	-	0	ID=cds-ML1405;Parent=gene-ML1405;Note=Similar to many transposases e.g. Rhodococcus sp. TR:Q53053%2C Mycobacterium smegmatis TR:Q48344 (carried on IS6120) and Mycobacterium avium TR:Q9ZA68 (carried on IS666).;gbkey=CDS;gene=ML1405;product=transposase(pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1687672	1688715	.	+	.	ID=gene-argC;Name=argC;gbkey=Gene;gene=argC;gene_biotype=protein_coding;gene_synonym=ML1406
AL450380.1	EMBL	CDS	1687672	1688715	.	+	0	ID=cds-CAC30357.1;Parent=gene-argC;Dbxref=GOA:Q9CC15,InterPro:IPR000534,InterPro:IPR000706,InterPro:IPR012280,InterPro:IPR016040,InterPro:IPR023013,NCBI_GP:CAC30357.1;Name=CAC30357.1;Note=Highly similar to many N-acetyl-gamma-glutamyl-phosphate reductases (EC 1.2.1.38) involved in arginine biosynthesis%2C including: Streptomyces coelicolor SW:ARGC_STRCO (AL031541) (342 aa)%3B Fasta score E(): 0%2C 62.1%25 identity in 346 aa overlap and Mycobacterium tuberculosis Rv1642 SW:ARGC_MYCTU (P94987) (352 aa)%3B Fasta score E(): 0%2C 81.1%25 identity in 344 aa overlap. Contains Pfam match to entry PF01118 Semialdhyde_dh%2C Semialdehyde dehydrogenase. Contains PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site.;gbkey=CDS;gene=argC;product=N-acetyl-[gamma]-glutamyl-phosphate reductase;protein_id=CAC30357.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1687684	1688670	.	+	.	ID=id-argC;Note=Pfam match to entry PF01118 Semialdhyde_dh%2C Semialdehyde dehydrogenase%2C score 294.60%2C E-value 1.3e-84;gbkey=misc_feature;gene=argC
AL450380.1	EMBL	sequence_feature	1688113	1688163	.	+	.	ID=id-argC-2;Note=PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site;gbkey=misc_feature;gene=argC
AL450380.1	EMBL	gene	1688712	1689935	.	+	.	ID=gene-argJ;Name=argJ;gbkey=Gene;gene=argJ;gene_biotype=protein_coding;gene_synonym=ML1407
AL450380.1	EMBL	CDS	1688712	1689935	.	+	0	ID=cds-CAC30358.1;Parent=gene-argJ;Dbxref=GOA:Q9CC14,InterPro:IPR002813,InterPro:IPR016117,NCBI_GP:CAC30358.1;Name=CAC30358.1;Note=Highly similar to many glutamate N-acetyltransferases (EC 2.3.1.35) including: Corynebacterium glutamicum SW:ARGJ_CORGL (Q59280) (388 aa)%3B Fasta score E(): 0%2C 58.2%25 identity in 392 aa overlap and Mycobacterium tuberculosis RV1653 TR:P94988 (EMBL:Z85982) (404 aa)%3B Fasta score E(): 0%2C 82.4%25 identity in 404 aa overlap. Contains Pfam match to entry PF01960 ArgJ%2C ArgJ family.;gbkey=CDS;gene=argJ;product=glutamate N-acetyltransferase;protein_id=CAC30358.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1688784	1689932	.	+	.	ID=id-argJ;Note=Pfam match to entry PF01960 ArgJ%2C ArgJ family%2C score 670.20%2C E-value 1e-197;gbkey=misc_feature;gene=argJ
AL450380.1	EMBL	gene	1689932	1690837	.	+	.	ID=gene-argB;Name=argB;gbkey=Gene;gene=argB;gene_biotype=protein_coding;gene_synonym=ML1408
AL450380.1	EMBL	CDS	1689932	1690837	.	+	0	ID=cds-CAC30359.1;Parent=gene-argB;Dbxref=GOA:Q9CC13,InterPro:IPR001048,InterPro:IPR004662,NCBI_GP:CAC30359.1;Name=CAC30359.1;Note=Highly similar to many acetylglutamate kinases (EC 2.7.2.8) involved in arginine biosynthesis%2C including: Corynebacterium glutamicum SW:ARGB_CORGL (Q59281) (294 aa)%3B Fasta score E(): 0%2C 64.1%25 identity in 270 aa overlap and Mycobacterium tuberculosis RV1654 SW:ARGB_MYCTU (P94989) (294 aa)%3B Fasta score E(): 0%2C 87.5%25 identity in 288 aa overlap. Contains Pfam match to entry PF01960 ArgJ%2C ArgJ family. Contains Pfam match to entry PF00696 aakinase%2C Amino acid kinase family.;gbkey=CDS;gene=argB;product=acetylglutamate kinase;protein_id=CAC30359.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1690037	1690675	.	+	.	ID=id-argB;Note=Pfam match to entry PF00696 aakinase%2C Amino acid kinase family%2C score 146.40%2C E-value 4.9e-40;gbkey=misc_feature;gene=argB
AL450380.1	EMBL	gene	1690889	1692103	.	+	.	ID=gene-argD;Name=argD;gbkey=Gene;gene=argD;gene_biotype=protein_coding;gene_synonym=ML1409
AL450380.1	EMBL	CDS	1690889	1692103	.	+	0	ID=cds-CAC30360.1;Parent=gene-argD;Dbxref=GOA:Q9CC12,InterPro:IPR004636,InterPro:IPR005814,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,NCBI_GP:CAC30360.1;Name=CAC30360.1;Note=Highly similar to many acetylornithine aminotransferases (EC 2.6.1.11) involved in arginine biosynthesis%2C including: Escherichia coli SW:ARGD_ECOLI (P18335) (405 aa)%3B Fasta score E(): 0%2C 38.7%25 identity in 390 aa overlap and Mycobacterium tuberculosis RV1655 SW:ARGD_MYCTU (P94990) (400 aa)%3B Fasta score E(): 0%2C 82.9%25 identity in 397 aa overlap. Contains Pfam match to entry PF00202 aminotran_3%2C Aminotransferases class-III pyridoxal-phosphate. Contains PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.;gbkey=CDS;gene=argD;product=acetylornithine aminotransferase;protein_id=CAC30360.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1690991	1692013	.	+	.	ID=id-argD;Note=Pfam match to entry PF00202 aminotran_3%2C Aminotransferases class-III pyridoxal-phosphate%2C score 418.00%2C E-value 7.5e-145;gbkey=misc_feature;gene=argD
AL450380.1	EMBL	sequence_feature	1691549	1691662	.	+	.	ID=id-argD-2;Note=PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site;gbkey=misc_feature;gene=argD
AL450380.1	EMBL	gene	1692135	1693097	.	+	.	ID=gene-argF;Name=argF;gbkey=Gene;gene=argF;gene_biotype=protein_coding;gene_synonym=ML1410
AL450380.1	EMBL	CDS	1692135	1693097	.	+	0	ID=cds-CAC30361.1;Parent=gene-argF;Dbxref=GOA:Q9CC11,InterPro:IPR002292,InterPro:IPR006130,InterPro:IPR006131,InterPro:IPR006132,InterPro:IPR024904,NCBI_GP:CAC30361.1;Name=CAC30361.1;Note=Highly similar to many ornithine carbamoyltransferase (EC 2.1.3.3) involved in arginine biosynthesis%2C including: Bacillus subtilis SW:OTCA_BACSU (P18186) (319 aa)%3B Fasta score E(): 0%2C 48.0%25 identity in 304 aa overlap and Mycobacterium tuberculosis SW:OTCA_MYCTU (P94991) (307 aa)%3B Fasta score E(): 0%2C 85.0%25 identity in 306 aa overlap. Note codon 15 may offer an alternative translational start site. Contains Pfam match to entry PF00185 OTCace%2C Aspartate/ornithine carbamoyltransferase. Contains PS00097 Aspartate and ornithine carbamoyltransferases signature.;gbkey=CDS;gene=argF;product=ornithine carbamoyltransferase;protein_id=CAC30361.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1692183	1693088	.	+	.	ID=id-argF;Note=Pfam match to entry PF00185 OTCace%2C Aspartate/ornithine carbamoyltransferase%2C score 526.00%2C E-value 2.7e-154;gbkey=misc_feature;gene=argF
AL450380.1	EMBL	sequence_feature	1692312	1692335	.	+	.	ID=id-argF-2;Note=PS00097 Aspartate and ornithine carbamoyltransferases signature;gbkey=misc_feature;gene=argF
AL450380.1	EMBL	gene	1693100	1693603	.	+	.	ID=gene-argR;Name=argR;gbkey=Gene;gene=argR;gene_biotype=protein_coding;gene_synonym=ML1411
AL450380.1	EMBL	CDS	1693100	1693603	.	+	0	ID=cds-CAC30362.1;Parent=gene-argR;Dbxref=GOA:P57992,InterPro:IPR001669,InterPro:IPR011991,InterPro:IPR020899,InterPro:IPR020900,InterPro:IPR024946,NCBI_GP:CAC30362.1;Name=CAC30362.1;Note=Highly similar to many ArgR orthologues (which regulate the arginine biosynthetic genes) including: Bacillus stearothermophilus SW:ARGR_BACST (O31408) (149 aa)%3B Fasta score E(): 2.3e-10%2C 33.8%25 identity in 154 aa overlap and Mycobacterium tuberculosis RV1657 SW:ARGR_MYCTU (P94992) (170 aa)%3B Fasta score E(): 0%2C 79.7%25 identity in 158 aa overlap.;gbkey=CDS;gene=argR;product=arginine repressor;protein_id=CAC30362.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1693602	1693607	.	+	.	ID=id-AL450380.1:1693602..1693607;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1693613	1694812	.	+	.	ID=gene-argG;Name=argG;gbkey=Gene;gene=argG;gene_biotype=protein_coding;gene_synonym=ML1412
AL450380.1	EMBL	CDS	1693613	1694812	.	+	0	ID=cds-CAC30363.1;Parent=gene-argG;Dbxref=GOA:Q9CC10,InterPro:IPR001518,InterPro:IPR014729,InterPro:IPR018223,InterPro:IPR023434,InterPro:IPR024074,NCBI_GP:CAC30363.1;Name=CAC30363.1;Note=Highly similar to many argininosuccinate synthases (EC 6.3.4.5) involved in arginine biosynthesis%2C including: Streptomyces clavuligerus SW:ASSY_STRCL (P50986) (397 aa)%3B Fasta score E(): 0%2C 67.0%25 identity in 397 aa overlap and Mycobacterium tuberculosis SW:ASSY_MYCTU (P94993) (398 aa)%3B Fasta score E(): 0%2C 91.0%25 identity in 398 aa overlap. Contains Pfam match to entry PF00764 Arginosuc_synth%2C Arginosuccinate synthase. Contains PS00564 Argininosuccinate synthase signature 1. Contains PS00565 Argininosuccinate synthase signature 2.;gbkey=CDS;gene=argG;product=arginosuccinate synthase;protein_id=CAC30363.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1693631	1694800	.	+	.	ID=id-argG;Note=Pfam match to entry PF00764 Arginosuc_synth%2C Arginosuccinate synthase%2C score 865.50%2C E-value 6.8e-272;gbkey=misc_feature;gene=argG
AL450380.1	EMBL	sequence_feature	1693637	1693663	.	+	.	ID=id-argG-2;Note=PS00564 Argininosuccinate synthase signature 1;gbkey=misc_feature;gene=argG
AL450380.1	EMBL	sequence_feature	1693964	1693999	.	+	.	ID=id-argG-3;Note=PS00565 Argininosuccinate synthase signature 2;gbkey=misc_feature;gene=argG
AL450380.1	EMBL	gene	1694884	1696296	.	+	.	ID=gene-argH;Name=argH;gbkey=Gene;gene=argH;gene_biotype=protein_coding;gene_synonym=ML1413
AL450380.1	EMBL	CDS	1694884	1696296	.	+	0	ID=cds-CAC30364.1;Parent=gene-argH;Dbxref=GOA:Q9CC09,InterPro:IPR000362,InterPro:IPR008948,InterPro:IPR009049,InterPro:IPR020557,InterPro:IPR022761,InterPro:IPR024083,InterPro:IPR029419,NCBI_GP:CAC30364.1;Name=CAC30364.1;Note=Highly similar to many argininosuccinate lyases (EC 4.3.2.1) involved in arginine biosynthesis%2C including: Escherichia coli SW:ARLY_ECOLI (P11447) (172 aa)%3B BlastP Expect 9.3 and Mycobacterium tuberculosis SW:ARLY_MYCTU (P94994) (470 aa)%3B Fasta score E(): 0%2C 88.1%25 identity in 470 aa overlap. Contains Pfam match to entry PF00206 lyase_1%2C Lyase. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00163 Fumarate lyases signature.;gbkey=CDS;gene=argH;product=arginosuccinate lyase;protein_id=CAC30364.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1695004	1696194	.	+	.	ID=id-argH;Note=Pfam match to entry PF00206 lyase_1%2C Lyase%2C score 300.30%2C E-value 2.4e-86;gbkey=misc_feature;gene=argH
AL450380.1	EMBL	sequence_feature	1695724	1695753	.	+	.	ID=id-argH-2;Note=PS00163 Fumarate lyases signature;gbkey=misc_feature;gene=argH
AL450380.1	EMBL	sequence_feature	1695763	1695786	.	+	.	ID=id-argH-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=argH
AL450380.1	EMBL	pseudogene	1696459	1696776	.	+	.	ID=gene-ML1414;Name=ML1414;gbkey=Gene;gene=ML1414;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1696459	1696776	.	+	0	ID=cds-ML1414;Parent=gene-ML1414;Note=Possible pseudogene of M. tuberculosis orthologue PGRS-family proteins;gbkey=CDS;gene=ML1414;product=PGRS-family protein(pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1697090	1697811	.	+	.	ID=gene-pks10;Name=pks10;gbkey=Gene;gene=pks10;gene_biotype=pseudogene;gene_synonym=ML1415;pseudo=true
AL450380.1	EMBL	CDS	1697090	1697811	.	+	0	ID=cds-pks10;Parent=gene-pks10;Note=Possible pseudogene of M. tuberculosis orthologue pks10 (Best blastx score 265);gbkey=CDS;gene=pks10;product=polyketide synthase (chalcone synthase-like) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1697965	1699247	.	+	.	ID=gene-pks7;Name=pks7;gbkey=Gene;gene=pks7;gene_biotype=pseudogene;gene_synonym=ML1416;pseudo=true
AL450380.1	EMBL	CDS	1697965	1699247	.	+	0	ID=cds-pks7;Parent=gene-pks7;Note=Possible pseudogene of M. tuberculosis orthologue pks7 (Best blastx score 371);gbkey=CDS;gene=pks7;product=polyketide synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1699648	1700454	.	+	.	ID=gene-ML1417;Name=ML1417;gbkey=Gene;gene=ML1417;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1699648	1700454	.	+	0	ID=cds-CAC30368.1;Parent=gene-ML1417;Dbxref=GOA:Q9CC08,InterPro:IPR003763,InterPro:IPR011146,NCBI_GP:CAC30368.1;Name=CAC30368.1;Note=Similar to several CDP-diacylglycerol pyrophosphatases (EC 3.6.1.26) involved in phospholipid biosynthesis%2C including: Salmonella typhimurium SW:CDH_SALTY (P26219) (251 aa)%3B Fasta score E(): 1.6e-25%2C 39.1%25 identity in 220 aa overlap and Mycobacterium tuberculosis RV2289 SW:CDH_MYCTU (Q50676) (260 aa)%3B Fasta score E(): 0%2C 66.4%25 identity in 256 aa overlap.;gbkey=CDS;gene=ML1417;product=possible CDP-diacylglycerol pyrophosphatase;protein_id=CAC30368.1;transl_table=11
AL450380.1	EMBL	gene	1700696	1701244	.	-	.	ID=gene-ML1418;Name=ML1418;gbkey=Gene;gene=ML1418;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1700696	1701244	.	-	0	ID=cds-CAC30369.1;Parent=gene-ML1418;Dbxref=GOA:Q9CC07,InterPro:IPR000866,InterPro:IPR012336,UniProtKB/TrEMBL:Q9CC07,NCBI_GP:CAC30369.1;Name=CAC30369.1;Note=Highly similar to several proteins of undefined function including: Mycobacterium tuberculosis TR:P71990 (EMBL:Z81360) (182 aa)%3B Fasta score E(): 0%2C 86.3%25 identity in 182 aa overlap and Synechocystis sp. TR:P73178 (EMBL:D90904) (194 aa)%3B Fasta score E(): 0%2C 52.5%25 identity in 179 aa overlap.;gbkey=CDS;gene=ML1418;product=conserved hypothetical protein;protein_id=CAC30369.1;transl_table=11
AL450380.1	EMBL	repeat_region	1702192	1702218	.	+	.	ID=id-AL450380.1:1702192..1702218;Note=27 bp repeat upstream of 45 bp repeat associated with REPLEP;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	1702219	1703101	.	+	.	ID=id-AL450380.1:1702219..1703101;Note=REPLEP region%2C copy 9%3B 5'-end most similar to REPLEP 13%3B truncated at 3'-end;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	1702219	1702263	.	-	.	ID=id-AL450380.1:1702219..1702263;Note=45 bp REPLEP-associated sequence;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	1702264	1703101	.	+	.	ID=id-AL450380.1:1702264..1703101;Note=Dispersed repeat%2C REPLEP%2C copy 9%3B truncated at 3'-end;gbkey=repeat_region
AL450380.1	EMBL	gene	1704354	1706045	.	-	.	ID=gene-ML1419;Name=ML1419;gbkey=Gene;gene=ML1419;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1704354	1706045	.	-	0	ID=cds-CAC30370.1;Parent=gene-ML1419;Dbxref=GOA:Q7AQ57,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR001610,InterPro:IPR013767,InterPro:IPR029787,UniProtKB/TrEMBL:Q7AQ57,NCBI_GP:CAC30370.1;Name=CAC30370.1;Note=The N-terminus is similar to several two component sensor histidine kinases e.g. Bacillus subtilis SW:KINA_BACSU (P16497) (634 aa)%3B BlastP Expect 9.0. The C-terminus is similar to many hyptothetical proteins as well as Caulobacter crescentus PleD protein TR:Q46020 (EMBL:L42554) (634 aa)%3B BlastP Expect 9.0%2C a response regulator important for the regulation of morphological differentiation. Contains 3 Pfam matches to entry PF00989 PAS%2C PAS domain. Contains Pfam match to entry PF00990 DUF9%2C Domain of unknown function.;gbkey=CDS;gene=ML1419;product=possible regulatory protein;protein_id=CAC30370.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1704393	1704890	.	-	.	ID=id-ML1419;Note=Pfam match to entry PF00990 DUF9%2C Domain of unknown function%2C score 225.00%2C E-value 1.1e-63;gbkey=misc_feature;gene=ML1419
AL450380.1	EMBL	sequence_feature	1705161	1705271	.	-	.	ID=id-ML1419-2;Note=Pfam match to entry PF00989 PAS%2C PAS domain%2C score 15.10%2C E-value 0.015;gbkey=misc_feature;gene=ML1419
AL450380.1	EMBL	sequence_feature	1705437	1705586	.	-	.	ID=id-ML1419-3;Note=Pfam match to entry PF00989 PAS%2C PAS domain%2C score 23.30%2C E-value 7.7e-05;gbkey=misc_feature;gene=ML1419
AL450380.1	EMBL	sequence_feature	1705755	1705949	.	-	.	ID=id-ML1419-4;Note=Pfam match to entry PF00989 PAS%2C PAS domain%2C score 24.90%2C E-value 2.8e-05;gbkey=misc_feature;gene=ML1419
AL450380.1	EMBL	gene	1706391	1706744	.	+	.	ID=gene-ML1420;Name=ML1420;gbkey=Gene;gene=ML1420;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1706391	1706744	.	+	0	ID=cds-CAC30371.1;Parent=gene-ML1420;Dbxref=UniProtKB/TrEMBL:Q7AQ56,NCBI_GP:CAC30371.1;Name=CAC30371.1;Note=unknown function.;gbkey=CDS;gene=ML1420;product=hypothetical protein;protein_id=CAC30371.1;transl_table=11
AL450380.1	EMBL	pseudogene	1708600	1709267	.	-	.	ID=gene-ML1421;Name=ML1421;gbkey=Gene;gene=ML1421;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1708600	1709267	.	-	0	ID=cds-ML1421;Parent=gene-ML1421;Note=Possible pseudogene of M. tuberculosis orthologue Rv2005c (Best blastx score 239);gbkey=CDS;gene=ML1421;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1709617	1710378	.	-	.	ID=gene-ML1422;Name=ML1422;gbkey=Gene;gene=ML1422;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1709617	1710378	.	-	0	ID=cds-ML1422;Parent=gene-ML1422;Note=Possible pseudogene of M. tuberculosis orthologue Rv2033c (Best blastx score 279);gbkey=CDS;gene=ML1422;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1710507	1711496	.	-	.	ID=gene-ML1423;Name=ML1423;gbkey=Gene;gene=ML1423;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1710507	1711496	.	-	0	ID=cds-CAC30374.1;Parent=gene-ML1423;Dbxref=GOA:Q7AQ55,InterPro:IPR002641,InterPro:IPR016035,UniProtKB/TrEMBL:Q7AQ55,NCBI_GP:CAC30374.1;Name=CAC30374.1;Note=Highly similar to several proteins of undefined function including: Bacillus subtilis SW:YQHO_BACSU (P54513) (291 aa)%3B Fasta score E(): 2.8e-24%2C 37.3%25 identity in 308 aa overlap and Mycobacterium tuberculosis RV2037C TR:O53481 (EMBL:AL021899) (324 aa)%3B Fasta score E(): 0%2C 80.5%25 identity in 323 aa overlap.;gbkey=CDS;gene=ML1423;product=conserved hypothetical protein;protein_id=CAC30374.1;transl_table=11
AL450380.1	EMBL	gene	1711566	1712636	.	-	.	ID=gene-ML1424;Name=ML1424;gbkey=Gene;gene=ML1424;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1711566	1712636	.	-	0	ID=cds-CAC30375.1;Parent=gene-ML1424;Dbxref=GOA:Q7AQ54,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR008995,InterPro:IPR012340,InterPro:IPR013611,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7AQ54,NCBI_GP:CAC30375.1;Name=CAC30375.1;Note=Highly similar to several binding-protein-dependent transport proteins including: Escherichia coli SN-glycerol-3-phosphate transport ATP-binding protein SW:UGPC_ECOLI (P10907) (356 aa)%3B Fasta score E(): 0%2C 47.9%25 identity in 363 aa overlap and Mycobacterium tuberculosis ABC-type sugar transport protein RV2038C TR:O53482 (EMBL:AL021899) (357 aa)%3B Fasta score E(): 0%2C 79.7%25 identity in 355 aa overlap. Contains Pfam match to entry PF00005 ABC_tran%2C ABC transporter. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00211 ABC transporters family signature.%3B~Similar to ML1089%2C ML0669 and ML1892;gbkey=CDS;gene=ML1424;product=probable binding-protein-dependent transport protein;protein_id=CAC30375.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1712001	1712546	.	-	.	ID=id-ML1424;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 197.40%2C E-value 2.2e-55;gbkey=misc_feature;gene=ML1424
AL450380.1	EMBL	sequence_feature	1712187	1712231	.	-	.	ID=id-ML1424-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=ML1424
AL450380.1	EMBL	sequence_feature	1712502	1712525	.	-	.	ID=id-ML1424-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1424
AL450380.1	EMBL	gene	1712639	1713490	.	-	.	ID=gene-ML1425;Name=ML1425;gbkey=Gene;gene=ML1425;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1712639	1713490	.	-	0	ID=cds-CAC30376.1;Parent=gene-ML1425;Dbxref=GOA:Q7AQ53,InterPro:IPR000515,UniProtKB/TrEMBL:Q7AQ53,NCBI_GP:CAC30376.1;Name=CAC30376.1;Note=Highly similar to many putative ABC_transport proteins e.g. Mycobacterium tuberculosis sugar transport protein RV2039C TR:O53483 (EMBL:AL021899) (280 aa)%3B Fasta score E(): 0%2C 79.2%25 identity in 283 aa overlap. Contains multiple possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component. Contains PS00402 Binding-protein-dependent transport systems inner membrane comp sign..%3B~Similar to ML1769;gbkey=CDS;gene=ML1425;product=probable ABC-transport protein%2C inner membrane component;protein_id=CAC30376.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1712756	1712992	.	-	.	ID=id-ML1425;Note=Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component%2C score 70.90%2C E-value 2.8e-17;gbkey=misc_feature;gene=ML1425
AL450380.1	EMBL	sequence_feature	1712903	1712989	.	-	.	ID=id-ML1425-2;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp sign.;gbkey=misc_feature;gene=ML1425
AL450380.1	EMBL	gene	1713477	1714436	.	-	.	ID=gene-ML1426;Name=ML1426;gbkey=Gene;gene=ML1426;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1713477	1714436	.	-	0	ID=cds-CAC30377.1;Parent=gene-ML1426;Dbxref=GOA:Q7AQ52,InterPro:IPR000515,UniProtKB/TrEMBL:Q7AQ52,NCBI_GP:CAC30377.1;Name=CAC30377.1;Note=Highly similar to many putative ABC_transport proteins e.g. Mycobacterium tuberculosis sugar transport protein RV2040C TR:O53484 (EMBL:AL021899) (300 aa)%3B Fasta score E(): 0%2C 81.6%25 identity in 293 aa overlap. Contains multiple possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component. Contains PS00402 Binding-protein-dependent transport systems inner membrane comp sign..%3B~Similar to ML1768;gbkey=CDS;gene=ML1426;product=probable ABC-transport protein%2C inner membrane component;protein_id=CAC30377.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1713615	1713845	.	-	.	ID=id-ML1426;Note=Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component%2C score 52.90%2C E-value 7e-12;gbkey=misc_feature;gene=ML1426
AL450380.1	EMBL	sequence_feature	1713756	1713842	.	-	.	ID=id-ML1426-2;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp sign.;gbkey=misc_feature;gene=ML1426
AL450380.1	EMBL	gene	1714433	1715770	.	-	.	ID=gene-ML1427;Name=ML1427;gbkey=Gene;gene=ML1427;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1714433	1715770	.	-	0	ID=cds-CAC30378.1;Parent=gene-ML1427;Dbxref=GOA:Q7AQ51,InterPro:IPR006059,InterPro:IPR006311,UniProtKB/TrEMBL:Q7AQ51,NCBI_GP:CAC30378.1;Name=CAC30378.1;Note=Similar to several putative ABC_transport proteins e.g. Mycobacterium tuberculosis lipoprotein component of sugar transport system RV2041C TR:O53485 (EMBL:AL021899) (439 aa)%3B Fasta score E(): 0%2C 77.4%25 identity in 446 aa overlap. Contains a possible N-terminal signal sequence and an appropriately positioned Prokaryotic membrane lipoprotein lipid attachment site. Contains Pfam match to entry PF01547 SBP_bacterial_1%2C Bacterial extracellular solute-binding protein. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=ML1427;product=possible ABC-transport lipoprotein;protein_id=CAC30378.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1714472	1715350	.	-	.	ID=id-ML1427;Note=Pfam match to entry PF01547 SBP_bacterial_1%2C Bacterial extracellular solute-binding protein%2C score 248.60%2C E-value 8.4e-71;gbkey=misc_feature;gene=ML1427
AL450380.1	EMBL	sequence_feature	1715681	1715713	.	-	.	ID=id-ML1427-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=ML1427
AL450380.1	EMBL	pseudogene	1716104	1716696	.	-	.	ID=gene-ML1429;Name=ML1429;gbkey=Gene;gene=ML1429;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1716104	1716696	.	-	0	ID=cds-ML1429;Parent=gene-ML1429;Note=Possible pseudogene similar to M. tuberculosis sigma factors;gbkey=CDS;gene=ML1429;product=ECF family sigma factor (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1716924	1717250	.	+	.	ID=gene-ML1430;Name=ML1430;gbkey=Gene;gene=ML1430;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1716924	1717250	.	+	0	ID=cds-CAC30380.1;Parent=gene-ML1430;Dbxref=UniProtKB/TrEMBL:Q9CC06,NCBI_GP:CAC30380.1;Name=CAC30380.1;Note=Similar to Streptomyces coelicolor TR:CAB88440 (EMBL:AL353815) (136 aa)%3B Fasta score E(): 9.5e-15%2C 52.4%25 identity in 105 aa overlap putative integral membrane protein. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1430;product=possible membrane protein;protein_id=CAC30380.1;transl_table=11
AL450380.1	EMBL	pseudogene	1717307	1718066	.	-	.	ID=gene-ML1431;Name=ML1431;gbkey=Gene;gene=ML1431;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1717307	1718066	.	-	0	ID=cds-ML1431;Parent=gene-ML1431;Note=Possible pseudogene of M. tuberculosis orthologue Rv2042c (Best blastx score 314);gbkey=CDS;gene=ML1431;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1718069	1718618	.	-	.	ID=gene-pncA;Name=pncA;gbkey=Gene;gene=pncA;gene_biotype=pseudogene;gene_synonym=ML1432;pseudo=true
AL450380.1	EMBL	CDS	1718069	1718618	.	-	0	ID=cds-pncA;Parent=gene-pncA;Note=Possible pseudogene of M. tuberculosis orthologue pncA (Best blastx score 195);gbkey=CDS;gene=pncA;product=pyrazinamide resistance/sensitivity (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1719464	1719674	.	-	.	ID=gene-ML1433;Name=ML1433;gbkey=Gene;gene=ML1433;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1719464	1719674	.	-	0	ID=cds-ML1433;Parent=gene-ML1433;Note=Possible pseudogene of M. tuberculosis orthologue Rv2044c (Best blastx score 110);gbkey=CDS;gene=ML1433;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1720209	1721340	.	-	.	ID=gene-lipT;Name=lipT;gbkey=Gene;gene=lipT;gene_biotype=pseudogene;gene_synonym=ML1434;pseudo=true
AL450380.1	EMBL	CDS	1720209	1721340	.	-	0	ID=cds-lipT;Parent=gene-lipT;Note=Possible pseudogene of M. tuberculosis orthologue lipT (Best blastx score 360);gbkey=CDS;gene=lipT;product=probable carboxylesterase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1721427	1722007	.	+	.	ID=gene-lppI;Name=lppI;gbkey=Gene;gene=lppI;gene_biotype=pseudogene;gene_synonym=ML1435;pseudo=true
AL450380.1	EMBL	CDS	1721427	1722007	.	+	0	ID=cds-lppI;Parent=gene-lppI;Note=Possible pseudogene of M. tuberculosis orthologue lppI (Best blastx score 133);gbkey=CDS;gene=lppI;product=probable lipoprotein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1723808	1726134	.	-	.	ID=gene-ML1436;Name=ML1436;gbkey=Gene;gene=ML1436;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1723808	1726134	.	-	0	ID=cds-ML1436;Parent=gene-ML1436;Note=Possible pseudogene of M. tuberculosis orthologue Rv2047c (Best blastx score 1206);gbkey=CDS;gene=ML1436;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1726364	1732453	.	-	.	ID=gene-pks12;Name=pks12;gbkey=Gene;gene=pks12;gene_biotype=pseudogene;gene_synonym=ML1437;pseudo=true
AL450380.1	EMBL	CDS	1726364	1732453	.	-	0	ID=cds-pks12;Parent=gene-pks12;Note=Possible pseudogene of M. tuberculosis orthologue pks12;gbkey=CDS;gene=pks12;product=polyketide synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1732853	1733036	.	-	.	ID=gene-ML1438;Name=ML1438;gbkey=Gene;gene=ML1438;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1732853	1733036	.	-	0	ID=cds-ML1438;Parent=gene-ML1438;Note=Possible pseudogene of M. tuberculosis orthologue Rv2049c (Best blastx score 101);gbkey=CDS;gene=ML1438;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1733332	1733337	.	+	.	ID=id-AL450380.1:1733332..1733337;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1733347	1733682	.	+	.	ID=gene-ML1439;Name=ML1439;gbkey=Gene;gene=ML1439;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1733347	1733682	.	+	0	ID=cds-CAC30389.1;Parent=gene-ML1439;Dbxref=GOA:Q9CC05,InterPro:IPR025182,UniProtKB/TrEMBL:Q9CC05,NCBI_GP:CAC30389.1;Name=CAC30389.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein RV2050TR:O53492 (EMBL:AL021899) (111 aa)%3B Fasta score E(): 0%2C 97.3%25 identity in 111 aa overlap.;gbkey=CDS;gene=ML1439;product=conserved hypothetical protein;protein_id=CAC30389.1;transl_table=11
AL450380.1	EMBL	gene	1733639	1734472	.	-	.	ID=gene-ML1440;Name=ML1440;gbkey=Gene;gene=ML1440;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1733639	1734472	.	-	0	ID=cds-CAC30390.1;Parent=gene-ML1440;Dbxref=GOA:Q7AQ50,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:Q7AQ50,NCBI_GP:CAC30390.1;Name=CAC30390.1;Note=Highly similar to several Eukaryotic dolichol-phosphate mannose synthases e.g. Saccharomyces cerevisiae SW:DPM1_YEAST (P14020) (267 aa)%3B Fasta score E(): 4.6e-13%2C 31.9%25 identity in 229 aa overlap. Also highly similar to the C-terminus of a two-domained protein from Mycobacterium tuberculosis RV2051C TR:O53493 (EMBL:AL021899) (874 aa)%3B Fasta score E(): 0%2C 78.9%25 identity in 275 aa overlap. Contains Pfam match to entry PF00535 Glycos_transf_2%2C Glycosyl transferases.;gbkey=CDS;gene=ML1440;product=possible glycosyl transferase;protein_id=CAC30390.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1733909	1734415	.	-	.	ID=id-ML1440;Note=Pfam match to entry PF00535 Glycos_transf_2%2C Glycosyl transferases%2C score 40.70%2C E-value 3.3e-08;gbkey=misc_feature;gene=ML1440
AL450380.1	EMBL	gene	1734469	1736403	.	-	.	ID=gene-ML1441;Name=ML1441;gbkey=Gene;gene=ML1441;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1734469	1736403	.	-	0	ID=cds-CAC30391.1;Parent=gene-ML1441;Dbxref=GOA:Q7AQ49,InterPro:IPR003010,InterPro:IPR004563,UniProtKB/TrEMBL:Q7AQ49,NCBI_GP:CAC30391.1;Name=CAC30391.1;Note=Highly similar to many apolipoprotein N-acyltransferases (EC 2.3.1.-) involved in lipoprotein biosynthesis e.g. Rhizobium meliloti SW:LNT_RHIME (Q52910) (541 aa)%3B Fasta score E(): 1.3e-08%2C 26.0%25 identity in 515 aa overlap. Also highly similar to the N-terminus of a two-domained protein from Mycobacterium tuberculosis RV2051C TR:O53493 (EMBL:AL021899) (874 aa)%3B Fasta score E(): 0%2C 67.7%25 identity in 601 aa overlap. Contains possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF00795 CN_hydrolase%2C Carbon-nitrogen hydrolase.;gbkey=CDS;gene=ML1441;product=possible apolipoprotein N-acyltransferase;protein_id=CAC30391.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1734739	1735557	.	-	.	ID=id-ML1441;Note=Pfam match to entry PF00795 CN_hydrolase%2C Carbon-nitrogen hydrolase%2C score -86.20%2C E-value 0.0022;gbkey=misc_feature;gene=ML1441
AL450380.1	EMBL	ribosome_entry_site	1734475	1734481	.	-	.	ID=id-ML1441-2;Parent=gene-ML1441;gbkey=regulatory;gene=ML1441;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	1736399	1738006	.	-	.	ID=gene-ML1442;Name=ML1442;gbkey=Gene;gene=ML1442;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1736399	1738006	.	-	0	ID=cds-ML1442;Parent=gene-ML1442;Note=Possible pseudogene of M. tuberculosis orthologue Rv2052c (Best blastx score 832);gbkey=CDS;gene=ML1442;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1738022	1738481	.	-	.	ID=gene-ML1443;Name=ML1443;gbkey=Gene;gene=ML1443;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1738022	1738481	.	-	0	ID=cds-ML1443;Parent=gene-ML1443;Note=Possible pseudogene of M. tuberculosis orthologue Rv2053c (Best blastx score 166);gbkey=CDS;gene=ML1443;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1738595	1739293	.	+	.	ID=gene-ML1444;Name=ML1444;gbkey=Gene;gene=ML1444;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1738595	1739293	.	+	0	ID=cds-CAC30394.1;Parent=gene-ML1444;Dbxref=GOA:Q9CC04,InterPro:IPR002925,InterPro:IPR029058,UniProtKB/TrEMBL:Q9CC04,NCBI_GP:CAC30394.1;Name=CAC30394.1;Note=Weakly similar to several carboxymethylenebutenolidases (EC 3.1.1.45) involved in 3-chlorocatechol degradation e.g. Pseudomonas putida SW:CLCD_PSEPU (P11453) (236 aa)%3B Fasta score E(): 7.6e-06%2C 28.6%25 identity in 234 aa overlap. Also highly similar to Mycobacterium tuberculosisRV2054 TR:O86353 (EMBL:AL021899) (237 aa)%3B Fasta score E(): 0%2C 76.1%25 identity in 230 aa overlap. Contains Pfam match to entry PF01738 DLH%2C Dienelactone hydrolase family.;gbkey=CDS;gene=ML1444;product=possible dienelactone hydrolase;protein_id=CAC30394.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1738631	1739281	.	+	.	ID=id-ML1444;Note=Pfam match to entry PF01738 DLH%2C Dienelactone hydrolase family%2C score 255.10%2C E-value 9.8e-73;gbkey=misc_feature;gene=ML1444
AL450380.1	EMBL	gene	1739651	1739875	.	-	.	ID=gene-ML1445;Name=ML1445;gbkey=Gene;gene=ML1445;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1739651	1739875	.	-	0	ID=cds-CAC30395.1;Parent=gene-ML1445;Dbxref=UniProtKB/TrEMBL:Q9CC03,NCBI_GP:CAC30395.1;Name=CAC30395.1;Note=unknown function.;gbkey=CDS;gene=ML1445;product=hypothetical protein;protein_id=CAC30395.1;transl_table=11
AL450380.1	EMBL	gene	1740098	1740484	.	-	.	ID=gene-ML1446;Name=ML1446;gbkey=Gene;gene=ML1446;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1740098	1740484	.	-	0	ID=cds-CAC30396.1;Parent=gene-ML1446;Dbxref=GOA:Q9CC02,InterPro:IPR011576,InterPro:IPR012349,InterPro:IPR019965,UniProtKB/TrEMBL:Q9CC02,NCBI_GP:CAC30396.1;Name=CAC30396.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein RV2061C TR:O86340 (EMBL:Z97984) (134 aa)%3B Fasta score E(): 0%2C 70.2%25 identity in 131 aa overlap.;gbkey=CDS;gene=ML1446;product=conserved hypothetical protein;protein_id=CAC30396.1;transl_table=11
AL450380.1	EMBL	pseudogene	1740511	1740789	.	-	.	ID=gene-cobN;Name=cobN;gbkey=Gene;gene=cobN;gene_biotype=pseudogene;gene_synonym=ML1447;pseudo=true
AL450380.1	EMBL	CDS	1740511	1740789	.	-	0	ID=cds-cobN;Parent=gene-cobN;Note=Possible pseudogene of M. tuberculosis orthologue cobN (Best blastx score 284);gbkey=CDS;gene=cobN;product=cobalt insertion (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1740904	1741458	.	+	.	ID=gene-ML1448;Name=ML1448;gbkey=Gene;gene=ML1448;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1740904	1741458	.	+	0	ID=cds-CAC30398.1;Parent=gene-ML1448;Dbxref=GOA:Q9CC01,InterPro:IPR000838,InterPro:IPR007627,InterPro:IPR011991,InterPro:IPR013249,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,UniProtKB/TrEMBL:Q9CC01,NCBI_GP:CAC30398.1;Name=CAC30398.1;Note=Similar to many ECF-subfamily RNA polymerase sigma factors including: Bacillus subtilis SigX SW:SIGX_BACSU (P35165) (194 aa)%3B Fasta score E(): 1.3e-07%2C 32.0%25 identity in 128 aa overlap and Mycobacterium tuberculosis RV2069 SW:RPSC_MYCTU (Q10679) (185 aa)%3B Fasta score E(): 0%2C 81.2%25 identity in 181 aa overlap. Contains a probable helix-turn-helix motif at aa 146-167 (Score 1052%2C SD +2.77) Contains Pfam match to entry PF00776 Sigma70_ECF%2C Sigma-70 factor (ECF subfamily). Contains PS01063 Sigma-70 factors ECF subfamily signature.;gbkey=CDS;gene=ML1448;product=ECF subfamily sigma factor;protein_id=CAC30398.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1741015	1741179	.	+	.	ID=id-ML1448;Note=Pfam match to entry PF00776 Sigma70_ECF%2C Sigma-70 factor (ECF subfamily)%2C score 79.40%2C E-value 7.5e-20;gbkey=misc_feature;gene=ML1448
AL450380.1	EMBL	sequence_feature	1741048	1741143	.	+	.	ID=id-ML1448-2;Note=PS01063 Sigma-70 factors ECF subfamily signature;gbkey=misc_feature;gene=ML1448
AL450380.1	EMBL	pseudogene	1741633	1742215	.	-	.	ID=gene-cobK;Name=cobK;gbkey=Gene;gene=cobK;gene_biotype=pseudogene;gene_synonym=ML1449;pseudo=true
AL450380.1	EMBL	CDS	1741633	1742215	.	-	0	ID=cds-cobK;Parent=gene-cobK;Note=Possible pseudogene of M. tuberculosis orthologue cobK (Best blastx score 178);gbkey=CDS;gene=cobK;product=precorrin reductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1742239	1742974	.	-	.	ID=gene-cobM;Name=cobM;gbkey=Gene;gene=cobM;gene_biotype=pseudogene;gene_synonym=ML1450;pseudo=true
AL450380.1	EMBL	CDS	1742239	1742974	.	-	0	ID=cds-cobM;Parent=gene-cobM;Note=Possible pseudogene of M. tuberculosis orthologue cobM (Best blastx score 341);gbkey=CDS;gene=cobM;product=precorrin-3 methylase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1745346	1746071	.	-	.	ID=gene-ML1451;Name=ML1451;gbkey=Gene;gene=ML1451;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1745346	1746071	.	-	0	ID=cds-ML1451;Parent=gene-ML1451;Note=Possible pseudogene of M. tuberculosis orthologue Rv2417c (Best blastx score 354);gbkey=CDS;gene=ML1451;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1746887	1747561	.	-	.	ID=gene-ML1452;Name=ML1452;gbkey=Gene;gene=ML1452;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1746887	1747561	.	-	0	ID=cds-CAC30402.1;Parent=gene-ML1452;Dbxref=GOA:Q9CC00,InterPro:IPR001345,InterPro:IPR013078,InterPro:IPR029033,UniProtKB/TrEMBL:Q9CC00,NCBI_GP:CAC30402.1;Name=CAC30402.1;Note=Similar to several including: Salmonella typhimurium SW:COBC_SALTY (P39701) (234 aa)%3B Fasta score E(): 5.4e-09%2C 29.4%25 identity in 197 aa overlap alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.-) involved in cobalamin biosynthesis. Also highly simlar to several proteins of undefined function e.g. Mycobacterium tuberculosis Rv2419c TR:P71724 (EMBL:Z81368) (223 aa)%3B Fasta score E(): 0%2C 80.4%25 identity in 224 aa overlap. Contains Pfam match to entry PF00300 PGAM%2C Phosphoglycerate mutase family. Contains PS00175 Phosphoglycerate mutase family phosphohistidine signature.;gbkey=CDS;gene=ML1452;product=possible phosphoglycerate mutase;protein_id=CAC30402.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1747154	1747543	.	-	.	ID=id-ML1452;Note=Pfam match to entry PF00300 PGAM%2C Phosphoglycerate mutase family%2C score 93.30%2C E-value 1.1e-24;gbkey=misc_feature;gene=ML1452
AL450380.1	EMBL	sequence_feature	1747511	1747540	.	-	.	ID=id-ML1452-2;Note=PS00175 Phosphoglycerate mutase family phosphohistidine signature;gbkey=misc_feature;gene=ML1452
AL450380.1	EMBL	gene	1747561	1747950	.	-	.	ID=gene-ML1453;Name=ML1453;gbkey=Gene;gene=ML1453;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1747561	1747950	.	-	0	ID=cds-CAC30403.1;Parent=gene-ML1453;Dbxref=GOA:Q9CBZ9,InterPro:IPR004394,InterPro:IPR025656,UniProtKB/TrEMBL:Q9CBZ9,NCBI_GP:CAC30403.1;Name=CAC30403.1;Note=Similar to a number of proteins of undefined function e.g. Mycobacterium tuberculosis RV2420C TR:O86327 (EMBL:Z81368) (126 aa)%3B Fasta score E(): 0%2C 87.0%25 identity in 123 aa overlap.;gbkey=CDS;gene=ML1453;product=conserved hypothetical protein;protein_id=CAC30403.1;transl_table=11
AL450380.1	EMBL	gene	1747947	1748591	.	-	.	ID=gene-ML1454;Name=ML1454;gbkey=Gene;gene=ML1454;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1747947	1748591	.	-	0	ID=cds-CAC30404.1;Parent=gene-ML1454;Dbxref=GOA:Q9CBZ8,InterPro:IPR004821,InterPro:IPR005248,InterPro:IPR014729,NCBI_GP:CAC30404.1;Name=CAC30404.1;Note=Similar to a number of proteins of undefined function e.g. Mycobacterium tuberculosis RV2421C TR:O86328 (EMBL:Z81368) (211 aa)%3B Fasta score E(): 0%2C 80.2%25 identity in 212 aa overlap.;gbkey=CDS;gene=ML1454;product=conserved hypothetical protein;protein_id=CAC30404.1;transl_table=11
AL450380.1	EMBL	pseudogene	1748919	1749213	.	+	.	ID=gene-ML1455;Name=ML1455;gbkey=Gene;gene=ML1455;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1748919	1749213	.	+	0	ID=cds-ML1455;Parent=gene-ML1455;Note=Possible pseudogene of M. tuberculosis orthologue Rv2422;gbkey=CDS;gene=ML1455;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1749443	1750785	.	-	.	ID=gene-ML1456;Name=ML1456;gbkey=Gene;gene=ML1456;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1749443	1750785	.	-	0	ID=cds-ML1456;Parent=gene-ML1456;Note=Possible pseudogene of M. tuberculosis orthologue Rv2425c (Best blastx score 490);gbkey=CDS;gene=ML1456;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1750816	1751680	.	-	.	ID=gene-ML1457;Name=ML1457;gbkey=Gene;gene=ML1457;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1750816	1751680	.	-	0	ID=cds-ML1457;Parent=gene-ML1457;Note=Possible pseudogene of M. tuberculosis orthologue Rv2426c (Best blastx score 304);gbkey=CDS;gene=ML1457;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1751751	1752980	.	-	.	ID=gene-proA;Name=proA;gbkey=Gene;gene=proA;gene_biotype=protein_coding;gene_synonym=ML1458
AL450380.1	EMBL	CDS	1751751	1752980	.	-	0	ID=cds-CAC30408.1;Parent=gene-proA;Dbxref=GOA:Q9CBZ7,InterPro:IPR000965,InterPro:IPR012134,InterPro:IPR015590,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR020593,NCBI_GP:CAC30408.1;Name=CAC30408.1;Note=Highly similar to many gamma-glutamyl phosphate reductases (EC 1.2.1.41) involved in proline biosynthesis%2C e.g. Bacillus subtilis SW:PROA_BACSU (P39821) (415 aa)%3B Fasta score E(): 0%2C 47.3%25 identity in 412 aa overlap and Mycobacterium tuberculosis SW:PROA_MYCTU (P71921) (415 aa)%3B Fasta score E(): 0%2C 82.2%25 identity in 409 aa overlap. Contains Pfam match to entry PF00171 aldedh%2C Aldehyde dehydrogenase family. Contains PS01223 Gamma-glutamyl phosphate reductase signature.;gbkey=CDS;gene=proA;product=[gamma]-glutamyl phosphate reductase;protein_id=CAC30408.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1751976	1752041	.	-	.	ID=id-proA;Note=PS01223 Gamma-glutamyl phosphate reductase signature;gbkey=misc_feature;gene=proA
AL450380.1	EMBL	sequence_feature	1751772	1753034	.	-	.	ID=id-AL450380.1:1751772..1753034;Note=Pfam match to entry PF00171 aldedh%2C Aldehyde dehydrogenase family%2C score -186.00%2C E-value 4e-06;gbkey=misc_feature
AL450380.1	EMBL	pseudogene	1753333	1753866	.	+	.	ID=gene-ML1459;Name=ML1459;gbkey=Gene;gene=ML1459;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1753333	1753866	.	+	0	ID=cds-ML1459;Parent=gene-ML1459;Note=Possible pseudogene of M. tuberculosis orthologue Rv0791c (Best blastx score 114);gbkey=CDS;gene=ML1459;product=possible monooxygenasemonoxygenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1753882	1755870	.	-	.	ID=gene-ML1460;Name=ML1460;gbkey=Gene;gene=ML1460;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1753882	1755870	.	-	0	ID=cds-ML1460;Parent=gene-ML1460;Note=Possible pseudogene of M. tuberculosis orthologue Rv2435c (Best blastx score 545);gbkey=CDS;gene=ML1460;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1757785	1758495	.	+	.	ID=gene-rbsK;Name=rbsK;gbkey=Gene;gene=rbsK;gene_biotype=pseudogene;gene_synonym=ML1461;pseudo=true
AL450380.1	EMBL	CDS	1757785	1758495	.	+	0	ID=cds-rbsK;Parent=gene-rbsK;Note=Possible pseudogene of M. tuberculosis orthologue rbsK (Best blastx score 102);gbkey=CDS;gene=rbsK;product=ribokinase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1758791	1759157	.	+	.	ID=gene-ML1462;Name=ML1462;gbkey=Gene;gene=ML1462;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1758791	1759157	.	+	0	ID=cds-ML1462;Parent=gene-ML1462;Note=Possible pseudogene of M. tuberculosis orthologue Rv2437 (Best blastx score 173);gbkey=CDS;gene=ML1462;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1759305	1761347	.	-	.	ID=gene-ML1463;Name=ML1463;gbkey=Gene;gene=ML1463;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1759305	1761347	.	-	0	ID=cds-CAC30413.1;Parent=gene-ML1463;Dbxref=GOA:Q9CBZ6,InterPro:IPR003010,InterPro:IPR014445,InterPro:IPR014729,InterPro:IPR022310,NCBI_GP:CAC30413.1;Name=CAC30413.1;Note=Highly similar to several NAD synthases e.g. Rhodobacter capsulatus SW:NADE_RHOCA (Q03638) (552 aa)%3B Fasta score E(): 3.6e-11%2C 24.9%25 identity in 579 aa overlap glutamine-dependent NAD(+) synthetase (EC 6.3.5.1). Also highly similar to and Mycobacterium tuberculosis hypothetical protein RV2438C TR:P71911 (EMBL:Z81451) (738 aa)%3B Fasta score E(): 0%2C 84.4%25 identity in 679 aa overlap. Contains Pfam match to entry PF00795 CN_hydrolase%2C Carbon-nitrogen hydrolase. Contains PS00591 Glycosyl hydrolases family 10 active site.;gbkey=CDS;gene=ML1463;product=possible NAD synthase;protein_id=CAC30413.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1760064	1760096	.	-	.	ID=id-ML1463;Note=PS00591 Glycosyl hydrolases family 10 active site;gbkey=misc_feature;gene=ML1463
AL450380.1	EMBL	sequence_feature	1760457	1761317	.	-	.	ID=id-ML1463-2;Note=Pfam match to entry PF00795 CN_hydrolase%2C Carbon-nitrogen hydrolase%2C score -40.40%2C E-value 1.8e-06;gbkey=misc_feature;gene=ML1463
AL450380.1	EMBL	gene	1761564	1762667	.	-	.	ID=gene-proB;Name=proB;gbkey=Gene;gene=proB;gene_biotype=protein_coding;gene_synonym=ML1464
AL450380.1	EMBL	CDS	1761564	1762667	.	-	0	ID=cds-CAC30414.1;Parent=gene-proB;Dbxref=GOA:Q9CBZ5,InterPro:IPR001048,InterPro:IPR001057,InterPro:IPR002478,InterPro:IPR005715,InterPro:IPR011529,InterPro:IPR015947,InterPro:IPR019797,NCBI_GP:CAC30414.1;Name=CAC30414.1;Note=Highly similar to many glutamate 5-kinases (EC 2.7.2.11) involved in proline biosynthesis e.g. Escherichia coli SW:PROB_ECOLI (P07005) (367 aa)%3B Fasta score E(): 0%2C 39.3%25 identity in 364 aa overlap and Mycobacterium tuberculosis RV2439C SW:PROB_MYCTU (P71910) (376 aa)%3B Fasta score E(): 0%2C 84.4%25 identity in 366 aa overlap. Contains Pfam match to entry PF00696 aakinase%2C Amino acid kinase family. Contains Pfam match to entry PF01472 PUA%2C PUA domain. Contains PS00902 Glutamate 5-kinase signature.;gbkey=CDS;gene=proB;product=glutamate 5-kinase;protein_id=CAC30414.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1761606	1761830	.	-	.	ID=id-proB;Note=Pfam match to entry PF01472 PUA%2C PUA domain%2C score 51.30%2C E-value 2.1e-11;gbkey=misc_feature;gene=proB
AL450380.1	EMBL	sequence_feature	1761966	1762031	.	-	.	ID=id-proB-2;Note=PS00902 Glutamate 5-kinase signature;gbkey=misc_feature;gene=proB
AL450380.1	EMBL	sequence_feature	1762056	1762634	.	-	.	ID=id-proB-3;Note=Pfam match to entry PF00696 aakinase%2C Amino acid kinase family%2C score 195.50%2C E-value 8.2e-55;gbkey=misc_feature;gene=proB
AL450380.1	EMBL	gene	1762671	1764110	.	-	.	ID=gene-ML1465;Name=ML1465;gbkey=Gene;gene=ML1465;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1762671	1764110	.	-	0	ID=cds-CAC30415.1;Parent=gene-ML1465;Dbxref=GOA:Q9CBZ4,InterPro:IPR006073,InterPro:IPR006074,InterPro:IPR006169,InterPro:IPR014100,InterPro:IPR015349,InterPro:IPR027417,NCBI_GP:CAC30415.1;Name=CAC30415.1;Note=Highly similar to several proposed GTP-binding proteins including: Escherichia coli SW:YHBZ_ECOLI (P42641) (390 aa)%3B Fasta score E(): 0%2C 41.6%25 identity in 353 aa overlap and Mycobacterium tuberculosis hypothetical protein RV2440C SW:P71909. Contains Pfam match to entry PF01018 GTP1_OBG%2C GTP1/OBG family. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML1465;product=GTP1/Obg-family GTP-binding protein;protein_id=CAC30415.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1762956	1764062	.	-	.	ID=id-ML1465;Note=Pfam match to entry PF01018 GTP1_OBG%2C GTP1/OBG family%2C score 489.40%2C E-value 1.4e-143;gbkey=misc_feature;gene=ML1465
AL450380.1	EMBL	sequence_feature	1763592	1763615	.	-	.	ID=id-ML1465-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1465
AL450380.1	EMBL	gene	1764225	1764491	.	-	.	ID=gene-rpmA;Name=rpmA;gbkey=Gene;gene=rpmA;gene_biotype=protein_coding;gene_synonym=ML1466
AL450380.1	EMBL	CDS	1764225	1764491	.	-	0	ID=cds-CAC30416.1;Parent=gene-rpmA;Dbxref=GOA:Q9CBZ3,InterPro:IPR001684,InterPro:IPR018261,NCBI_GP:CAC30416.1;Name=CAC30416.1;Note=Highly similar to many 50s ribosomal proteins (L27) including: Escherichia coli SW:RL27_ECOLI (P02427) (84 aa)%3B Fasta score E(): 5.8e-16%2C 63.9%25 identity in 83 aa overlap and Mycobacterium tuberculosis RV2441C SW:RL27_MYCTU (Z8145) (86 aa)%3B Fasta score E(): 3.3e-28%2C 93.8%25 identity in 81 aa overlap. Contains Pfam match to entry PF01016 Ribosomal_L27%2C Ribosomal L27 protein. Contains PS00831 Ribosomal protein L27 signature.;gbkey=CDS;gene=rpmA;product=50S ribosomal protein L27;protein_id=CAC30416.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1764249	1764488	.	-	.	ID=id-rpmA;Note=Pfam match to entry PF01016 Ribosomal_L27%2C Ribosomal L27 protein%2C score 187.50%2C E-value 2.1e-52;gbkey=misc_feature;gene=rpmA
AL450380.1	EMBL	sequence_feature	1764348	1764392	.	-	.	ID=id-rpmA-2;Note=PS00831 Ribosomal protein L27 signature;gbkey=misc_feature;gene=rpmA
AL450380.1	EMBL	gene	1764503	1764814	.	-	.	ID=gene-rplU;Name=rplU;gbkey=Gene;gene=rplU;gene_biotype=protein_coding;gene_synonym=ML1467
AL450380.1	EMBL	CDS	1764503	1764814	.	-	0	ID=cds-CAC30417.1;Parent=gene-rplU;Dbxref=GOA:Q9CBZ2,InterPro:IPR001787,InterPro:IPR018258,InterPro:IPR028909,NCBI_GP:CAC30417.1;Name=CAC30417.1;Note=Highly similar to many 50s ribosomal proteins (L21) including: Escherichia coli SW:RL21_ECOLI (P02422) (103 aa)%3B Fasta score E(): 9.8e-11%2C 37.0%25 identity in 100 aa overlap and Mycobacterium tuberculosis RV2441C SW:RL21_MYCTU (p71907) (104 aa)%3B Fasta score E(): 0%2C 91.2%25 identity in 102 aa overlap. Contains Pfam match to entry PF00829 Ribosomal_L21p%2C Ribosomal prokaryotic L21 protein.;gbkey=CDS;gene=rplU;product=50S ribosomal protein L21;protein_id=CAC30417.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1764524	1764808	.	-	.	ID=id-rplU;Note=Pfam match to entry PF00829 Ribosomal_L21p%2C Ribosomal prokaryotic L21 protein%2C score 166.30%2C E-value 5.2e-46;gbkey=misc_feature;gene=rplU
AL450380.1	EMBL	gene	1765041	1767815	.	-	.	ID=gene-ML1468;Name=ML1468;gbkey=Gene;gene=ML1468;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1765041	1767815	.	-	0	ID=cds-CAC30418.1;Parent=gene-ML1468;Dbxref=GOA:Q9CBZ1,InterPro:IPR003029,InterPro:IPR004659,InterPro:IPR012340,InterPro:IPR019307,InterPro:IPR022967,UniProtKB/TrEMBL:Q9CBZ1,NCBI_GP:CAC30418.1;Name=CAC30418.1;Note=Highly similar in parts to many ribonucleases e.g. Escherichia coli ribonuclease E (EC 3.1.4.-) SW:RNE_ECOLI (P21513) (1061 aa)%3B Fasta score E(): 1.6e-22%2C 36.4%25 identity in 429 aa overlap and Mycobacterium tuberculosis RV2444C TR:P71905 (EMBL:Z81451) (953 aa)%3B Fasta score E(): 0%2C 74.2%25 identity in 966 aa overlap. Contains Pfam match to entry PF00575 S1%2C S1 RNA binding domain.;gbkey=CDS;gene=ML1468;product=possible ribonuclease;protein_id=CAC30418.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1766511	1766747	.	-	.	ID=id-ML1468;Note=Pfam match to entry PF00575 S1%2C S1 RNA binding domain%2C score 17.20%2C E-value 0.0038;gbkey=misc_feature;gene=ML1468
AL450380.1	EMBL	gene	1768158	1768568	.	-	.	ID=gene-ndk;Name=ndk;gbkey=Gene;gene=ndk;gene_biotype=protein_coding;gene_synonym=ML1469
AL450380.1	EMBL	CDS	1768158	1768568	.	-	0	ID=cds-CAC30419.1;Parent=gene-ndk;Dbxref=GOA:Q9CBZ0,InterPro:IPR001564,NCBI_GP:CAC30419.1;Name=CAC30419.1;Note=Highly similar to many nucleoside diphosphate kinases (EC 2.7.4.6) including: Bacillus subtilis SW:NDK_BACSU (P31103) (149 aa)%3B Fasta score E(): 5e-27%2C 55.7%25 identity in 131 aa overlap and Mycobacterium tuberculosis RV2445C SW:NDK_MYCTU (P71904) (136 aa)%3B Fasta score E(): 0%2C 87.4%25 identity in 135 aa overlap. Contains Pfam match to entry PF00334 NDK%2C Nucleoside diphosphate kinases.;gbkey=CDS;gene=ndk;product=nucleoside diphosphate kinase;protein_id=CAC30419.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1768167	1768562	.	-	.	ID=id-ndk;Note=Pfam match to entry PF00334 NDK%2C Nucleoside diphosphate kinases%2C score 216.80%2C E-value 3.1e-61;gbkey=misc_feature;gene=ndk
AL450380.1	EMBL	gene	1768618	1768989	.	-	.	ID=gene-ML1470;Name=ML1470;gbkey=Gene;gene=ML1470;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1768618	1768989	.	-	0	ID=cds-CAC30420.1;Parent=gene-ML1470;Dbxref=InterPro:IPR025327,UniProtKB/TrEMBL:Q9CBY9,NCBI_GP:CAC30420.1;Name=CAC30420.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein TR:O53173 (EMBL:AL021246) (123 aa)%3B Fasta score E(): 1.5e-22%2C 66.7%25 identity in 108 aa overlap.;gbkey=CDS;gene=ML1470;product=conserved membrane protein;protein_id=CAC30420.1;transl_table=11
AL450380.1	EMBL	gene	1768986	1770443	.	-	.	ID=gene-folC;Name=folC;gbkey=Gene;gene=folC;gene_biotype=protein_coding;gene_synonym=ML1471
AL450380.1	EMBL	CDS	1768986	1770443	.	-	0	ID=cds-CAC30421.1;Parent=gene-folC;Dbxref=GOA:Q9CBY8,InterPro:IPR001645,InterPro:IPR004101,InterPro:IPR013221,InterPro:IPR018109,UniProtKB/TrEMBL:Q9CBY8,NCBI_GP:CAC30421.1;Name=CAC30421.1;Note=Highly similar to many folylpolyglutamate synthases (EC 6.3.2.17) including: Lactobacillus casei SW:FOLC_LACCA (P15925) (428 aa)%3B Fasta score E(): 0%2C 34.1%25 identity in 437 aa overlap and Mycobacterium tuberculosis RV2447C TR:O53174 (EMBL:AL021246) (487 aa)%3B Fasta score E(): 0%2C 78.7%25 identity in 483 aa overlap. Contains Pfam match to entry PF01225 Mur_ligase%2C Mur ligase family. Contains PS01012 Folylpolyglutamate synthase signature 2.;gbkey=CDS;gene=folC;product=folylpolyglutamate synthase;protein_id=CAC30421.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1769382	1770245	.	-	.	ID=id-folC;Note=Pfam match to entry PF01225 Mur_ligase%2C Mur ligase family%2C score 204.90%2C E-value 1.2e-57;gbkey=misc_feature;gene=folC
AL450380.1	EMBL	sequence_feature	1769889	1769936	.	-	.	ID=id-folC-2;Note=PS01012 Folylpolyglutamate synthase signature 2;gbkey=misc_feature;gene=folC
AL450380.1	EMBL	gene	1770440	1773100	.	-	.	ID=gene-valS;Name=valS;gbkey=Gene;gene=valS;gene_biotype=protein_coding;gene_synonym=ML1472
AL450380.1	EMBL	CDS	1770440	1773100	.	-	0	ID=cds-CAC30422.1;Parent=gene-valS;Dbxref=GOA:Q9CBY7,InterPro:IPR001412,InterPro:IPR002300,InterPro:IPR002303,InterPro:IPR009008,InterPro:IPR009080,InterPro:IPR010978,InterPro:IPR013155,InterPro:IPR014729,InterPro:IPR019499,NCBI_GP:CAC30422.1;Name=CAC30422.1;Note=Highly similar to many valyl-tRNA synthetases (EC 6.1.1.9) including: Bacillus stearothermophilus SW:SYV_BACST (P11931) (880 aa)%3B Fasta score E(): 0%2C 46.6%25 identity in 894 aa overlap and Mycobacterium tuberculosis RV2448C SW:SYV_MYCTU (O53175) (876 aa)%3B Fasta score E(): 0%2C 85.4%25 identity in 876 aa overlap. Contains Pfam match to entry PF00133 tRNA-synt_1%2C tRNA synthetases class I (I%2C L%2C M and V). Contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature.;gbkey=CDS;gene=valS;product=valyl-tRNA synthase;protein_id=CAC30422.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1771193	1773031	.	-	.	ID=id-valS;Note=Pfam match to entry PF00133 tRNA-synt_1%2C tRNA synthetases class I (I%2C L%2C M and V)%2C score 826.50%2C E-value 9.5e-245;gbkey=misc_feature;gene=valS
AL450380.1	EMBL	sequence_feature	1772909	1772944	.	-	.	ID=id-valS-2;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature;gbkey=misc_feature;gene=valS
AL450380.1	EMBL	pseudogene	1774186	1775241	.	-	.	ID=gene-ML1473;Name=ML1473;gbkey=Gene;gene=ML1473;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1774186	1775241	.	-	0	ID=cds-ML1473;Parent=gene-ML1473;Note=Possible pseudogene of M. tuberculosis orthologue Rv2449c (Best blastx score 203);gbkey=CDS;gene=ML1473;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1776096	1776704	.	-	.	ID=gene-ML1474;Name=ML1474;gbkey=Gene;gene=ML1474;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1776096	1776704	.	-	0	ID=cds-ML1474;Parent=gene-ML1474;Note=Possible pseudogene of M. tuberculosis orthologue Rv2453c (Best blastx score 269);gbkey=CDS;gene=ML1474;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1776713	1777660	.	-	.	ID=gene-ML1475;Name=ML1475;gbkey=Gene;gene=ML1475;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1776713	1777660	.	-	0	ID=cds-ML1475;Parent=gene-ML1475;Note=Possible pseudogene of M. tuberculosis orthologue Rv2454c (Best blastx score 505);gbkey=CDS;gene=ML1475;product=oxidoreductase%2C beta subunit (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1777922	1779435	.	-	.	ID=gene-ML1476;Name=ML1476;gbkey=Gene;gene=ML1476;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1777922	1779435	.	-	0	ID=cds-ML1476;Parent=gene-ML1476;Note=Possible pseudogene of M. tuberculosis orthologue Rv2455c (Best blastx score 483);gbkey=CDS;gene=ML1476;product=probable oxidoreductase alpha subunit (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1779773	1781053	.	-	.	ID=gene-clpX;Name=clpX;gbkey=Gene;gene=clpX;gene_biotype=protein_coding;gene_synonym=ML1477
AL450380.1	EMBL	CDS	1779773	1781053	.	-	0	ID=cds-CAC30427.1;Parent=gene-clpX;Dbxref=GOA:Q9CBY6,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR004487,InterPro:IPR010603,InterPro:IPR019489,InterPro:IPR027417,NCBI_GP:CAC30427.1;Name=CAC30427.1;Note=Highly similar to many ATP-dependent Clp protease ATP-binding subunits e.g. Bacillus subtilis SW:CLPX_BACSU (P50866) (420 aa)%3B Fasta score E(): 0%2C 63.4%25 identity in 426 aa overlap and Mycobacterium tuberculosis SW:CLPX_MYCTU (O53184) (426 aa)%3B Fasta score E(): 0%2C 96.0%25 identity in 426 aa overlap. Contains Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA). Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=clpX;product=ATP-dependent Clp protease ATP-binding subunit;protein_id=CAC30427.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1780085	1780708	.	-	.	ID=id-clpX;Note=Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%2C score -5.50%2C E-value 7.1e-05;gbkey=misc_feature;gene=clpX
AL450380.1	EMBL	sequence_feature	1780670	1780693	.	-	.	ID=id-clpX-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=clpX
AL450380.1	EMBL	gene	1781326	1782207	.	+	.	ID=gene-ML1478;Name=ML1478;gbkey=Gene;gene=ML1478;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1781326	1782207	.	+	0	ID=cds-CAC30428.1;Parent=gene-ML1478;Dbxref=GOA:Q9CBY5,InterPro:IPR003726,UniProtKB/TrEMBL:Q9CBY5,NCBI_GP:CAC30428.1;Name=CAC30428.1;Note=Highly similar to many transferases e.g. Escherichia coli homocysteine S-methyltransferase (EC 2.1.1.10) involved in methionine biosynthesis SW:MMUM_ECOLI (Q47690) (310 aa)%3B Fasta score E(): 0%2C 49.8%25 identity in 293 aa overlap and Mycobacterium tuberculosis putative transferase RV2458 TR:O53185.;gbkey=CDS;gene=ML1478;product=possible transferase;protein_id=CAC30428.1;transl_table=11
AL450380.1	EMBL	gene	1782204	1782848	.	-	.	ID=gene-clpP2;Name=clpP2;gbkey=Gene;gene=clpP2;gene_biotype=protein_coding;gene_synonym=ML1479
AL450380.1	EMBL	CDS	1782204	1782848	.	-	0	ID=cds-CAC30429.1;Parent=gene-clpP2;Dbxref=GOA:Q9CBY4,InterPro:IPR001907,InterPro:IPR018215,InterPro:IPR023562,InterPro:IPR029045,NCBI_GP:CAC30429.1;Name=CAC30429.1;Note=Highly similar to many ATP-dependent Clp protease proteolytic subunits (EC 3.4.21.92) including: Yersinia enterocolitica SW:CLPP_YEREN (Q60107) (207 aa)%3B Fasta score E(): 0%2C 47.1%25 identity in 204 aa overlap and Mycobacterium tuberculosis RV2460C SW:CLP2_MYCTU (O53187) (214 aa)%3B Fasta score E(): 0%2C 98.1%25 identity in 210 aa overlap. Contains Pfam match to entry PF00574 CLP_protease%2C Clp protease. Contains PS00381 Endopeptidase Clp serine active site.%3B~Highly similar to the adjoining CDS ML1480;gbkey=CDS;gene=clpP2;product=ATP-dependent Clp protease proteolytic subunit;protein_id=CAC30429.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1782231	1782752	.	-	.	ID=id-clpP2;Note=Pfam match to entry PF00574 CLP_protease%2C Clp protease%2C score 269.90%2C E-value 3.3e-77;gbkey=misc_feature;gene=clpP2
AL450380.1	EMBL	sequence_feature	1782510	1782545	.	-	.	ID=id-clpP2-2;Note=PS00381 Endopeptidase Clp serine active site;gbkey=misc_feature;gene=clpP2
AL450380.1	EMBL	gene	1782845	1783519	.	-	.	ID=gene-clpP;Name=clpP;gbkey=Gene;gene=clpP;gene_biotype=protein_coding;gene_synonym=ML1480
AL450380.1	EMBL	CDS	1782845	1783519	.	-	0	ID=cds-CAC30430.1;Parent=gene-clpP;Dbxref=GOA:Q9CBY3,InterPro:IPR001907,InterPro:IPR018215,InterPro:IPR023562,InterPro:IPR029045,NCBI_GP:CAC30430.1;Name=CAC30430.1;Note=Highly similar to many ATP-dependent Clp protease proteolytic subunits (EC 3.4.21.92) including: Bacillus subtilis SW:CLPP_BACSU (P80244) (197 aa)%3B Fasta score E(): 0%2C 54.5%25 identity in 187 aa overlap and Mycobacterium tuberculosis RV2461C SW:CLP1_MYCTU (O53188) (200 aa)%3B Fasta score E(): 0%2C 94.5%25 identity in 200 aa overlap. Contains Pfam match to entry PF00574 CLP_protease%2C Clp protease.%3B~Highly similar to the adjoining CDS ML1479;gbkey=CDS;gene=clpP;product=ATP-dependent Clp protease proteolytic subunit;protein_id=CAC30430.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1782872	1783390	.	-	.	ID=id-clpP;Note=Pfam match to entry PF00574 CLP_protease%2C Clp protease%2C score 307.10%2C E-value 2.2e-88;gbkey=misc_feature;gene=clpP
AL450380.1	EMBL	ribosome_entry_site	1783521	1783528	.	-	.	ID=id-AL450380.1:1783521..1783528;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1783571	1784980	.	-	.	ID=gene-ML1481;Name=ML1481;gbkey=Gene;gene=ML1481;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1783571	1784980	.	-	0	ID=cds-CAC30431.1;Parent=gene-ML1481;Dbxref=GOA:Q9CBY2,InterPro:IPR001179,InterPro:IPR005215,InterPro:IPR008880,InterPro:IPR008881,InterPro:IPR027304,NCBI_GP:CAC30431.1;Name=CAC30431.1;Note=Highly similar to many including: Escherichia coli trigger factor Tig%2C a molecular chaperone SW:TIG_ECOLI (P22257) (432 aa)%3B Fasta score E(): 8.1e-23%2C 25.4%25 identity in 433 aa overlap and Mycobacterium tuberculosis trigger factor SW:TIG_MYCTU (O53189) (466 aa)%3B Fasta score E(): 0%2C 70.1%25 identity in 468 aa overlap.;gbkey=CDS;gene=ML1481;product=possible molecular chaperone;protein_id=CAC30431.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1784988	1784992	.	-	.	ID=id-AL450380.1:1784988..1784992;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1785013	1785089	.	-	.	ID=gene-proU;Name=proU;gbkey=Gene;gene=proU;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	1785013	1785089	.	-	.	ID=rna-proU;Parent=gene-proU;Note=tRNA Pro anticodon TGG%2C Cove score 89.79;gbkey=tRNA;gene=proU;product=tRNA-Pro
AL450380.1	EMBL	exon	1785013	1785089	.	-	.	ID=exon-proU-1;Parent=rna-proU;Note=tRNA Pro anticodon TGG%2C Cove score 89.79;gbkey=tRNA;gene=proU;product=tRNA-Pro
AL450380.1	EMBL	gene	1785225	1785295	.	+	.	ID=gene-glyV;Name=glyV;gbkey=Gene;gene=glyV;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	1785225	1785295	.	+	.	ID=rna-glyV;Parent=gene-glyV;Note=tRNA Gly anticodon TCC%2C Cove score 63.84;gbkey=tRNA;gene=glyV;product=tRNA-Gly
AL450380.1	EMBL	exon	1785225	1785295	.	+	.	ID=exon-glyV-1;Parent=rna-glyV;Note=tRNA Gly anticodon TCC%2C Cove score 63.84;gbkey=tRNA;gene=glyV;product=tRNA-Gly
AL450380.1	EMBL	pseudogene	1785375	1786463	.	+	.	ID=gene-lipP;Name=lipP;gbkey=Gene;gene=lipP;gene_biotype=pseudogene;gene_synonym=ML1482;pseudo=true
AL450380.1	EMBL	CDS	1785375	1786463	.	+	0	ID=cds-lipP;Parent=gene-lipP;Note=Possible pseudogene of M. tuberculosis orthologue lipP (Best blastx score 423);gbkey=CDS;gene=lipP;product=probable esterase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1786561	1787376	.	-	.	ID=gene-ML1483;Name=ML1483;gbkey=Gene;gene=ML1483;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1786561	1787376	.	-	0	ID=cds-ML1483;Parent=gene-ML1483;Note=Possible pseudogene of M. tuberculosis orthologue Rv2464c (Best blastx score 234);gbkey=CDS;gene=ML1483;product=probable DNA glycosylase%2C endonuclease VIII (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1787386	1787874	.	-	.	ID=gene-ML1484;Name=ML1484;gbkey=Gene;gene=ML1484;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1787386	1787874	.	-	0	ID=cds-CAC30434.1;Parent=gene-ML1484;Dbxref=GOA:Q9CBY1,InterPro:IPR003500,InterPro:IPR011860,NCBI_GP:CAC30434.1;Name=CAC30434.1;Note=Similar to many isomerases including: Escherichia coli ribose 5-phosphate isomerase B (EC 5.3.1.6) SW:RPIB_ECOLI (P37351) (149 aa)%3B Fasta score E(): 2.8e-12%2C 32.9%25 identity in 146 aa overlap and Mycobacterium tuberculosis putative isomerase RV2465C TR:O53192 (EMBL:AL021246) (162 aa)%3B Fasta score E(): 0%2C 89.5%25 identity in 162 aa overlap.;gbkey=CDS;gene=ML1484;product=possible phosphopentose isomerase;protein_id=CAC30434.1;transl_table=11
AL450380.1	EMBL	gene	1787915	1788538	.	-	.	ID=gene-ML1485;Name=ML1485;gbkey=Gene;gene=ML1485;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1787915	1788538	.	-	0	ID=cds-CAC30435.1;Parent=gene-ML1485;Dbxref=GOA:Q9CBY0,InterPro:IPR001853,InterPro:IPR012336,UniProtKB/TrEMBL:Q9CBY0,NCBI_GP:CAC30435.1;Name=CAC30435.1;Note=Highly similar to several proteins of undefined function e.g. Mycobacterium tuberculosis RV2466C TR:O53193 (EMBL:AL02124) (207 aa)%3B Fasta score E(): 0%2C 80.6%25 identity in 206 aa overlap and Streptomyces coelicolor TR:CAB71809 (EMBL:AL138662) (216 aa)%3B Fasta score E(): 0%2C 52.3%25 identity in 214 aa overlap.;gbkey=CDS;gene=ML1485;product=conserved hypothetical protein;protein_id=CAC30435.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1788546	1788549	.	-	.	ID=id-AL450380.1:1788546..1788549;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1788670	1791258	.	+	.	ID=gene-ML1486;Name=ML1486;gbkey=Gene;gene=ML1486;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1788670	1791258	.	+	0	ID=cds-CAC30436.1;Parent=gene-ML1486;Dbxref=GOA:Q9CBX9,InterPro:IPR001930,InterPro:IPR012778,InterPro:IPR014782,InterPro:IPR024571,UniProtKB/TrEMBL:Q9CBX9,NCBI_GP:CAC30436.1;Name=CAC30436.1;Note=Highly similar to many aminopeptidases including: Streptomyces lividans aminopeptidase N (EC 3.4.11.2) SW:AMPN_STRLI (Q11010) (857 aa)%3B Fasta score E(): 0%2C 51.6%25 identity in 866 aa overlap and Mycobacterium tuberculosis aminopeptidase RV2467 TR:O53194 (EMBL:AL021246) (861 aa)%3B Fasta score E(): 0%2C 83.3%25 identity in 862 aa overlap. Contains Pfam match to entry PF01433 Peptidase_M1%2C Peptidase family M1. Contains PS00142 Neutral zinc metallopeptidases.;gbkey=CDS;gene=ML1486;product=probable aminopeptidase;protein_id=CAC30436.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1788718	1789836	.	+	.	ID=id-ML1486;Note=Pfam match to entry PF01433 Peptidase_M1%2C Peptidase family M1%2C score 136.40%2C E-value 5.2e-37;gbkey=misc_feature;gene=ML1486
AL450380.1	EMBL	sequence_feature	1789558	1789587	.	+	.	ID=id-ML1486-2;Note=PS00142 Neutral zinc metallopeptidases;gbkey=misc_feature;gene=ML1486
AL450380.1	EMBL	repeat_region	1791265	1791961	.	+	.	ID=id-AL450380.1:1791265..1791961;Note=Dispersed repeat%2C RLEP%2C copy 23;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	1791956	1792497	.	-	.	ID=gene-ML1487;Name=ML1487;gbkey=Gene;gene=ML1487;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1791956	1792497	.	-	0	ID=cds-ML1487;Parent=gene-ML1487;Note=Possible pseudogene of M. tuberculosis orthologue Rv2690c (Best blastx score 112);gbkey=CDS;gene=ML1487;product=possible transport protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1792958	1794061	.	-	.	ID=gene-ML1488;Name=ML1488;gbkey=Gene;gene=ML1488;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1792958	1794061	.	-	0	ID=cds-CAC30438.1;Parent=gene-ML1488;Dbxref=GOA:Q9CBX8,InterPro:IPR004838,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR019880,UniProtKB/TrEMBL:Q9CBX8,NCBI_GP:CAC30438.1;Name=CAC30438.1;Note=Weakly similar to several putative aminotransferases including: Neisseria meningitidis TR:AAF41303 (EMBL:AE002441) (395 aa)%3B Fasta score E(): 5.1e-13%2C 29.8%25 identity in 373 aa overlap and Mycobacterium tuberculosis RV1178 TR:O50434 (EMBL:AL010186) (362 aa)%3B Fasta score E(): 0%2C 83.4%25 identity in 361 aa overlap. Contains PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site.;gbkey=CDS;gene=ML1488;product=possible aminotransferase;protein_id=CAC30438.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1793351	1793392	.	-	.	ID=id-ML1488;Note=PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site;gbkey=misc_feature;gene=ML1488
AL450380.1	EMBL	ribosome_entry_site	1794067	1794071	.	-	.	ID=id-AL450380.1:1794067..1794071;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1794099	1794425	.	-	.	ID=gene-fdxA;Name=fdxA;gbkey=Gene;gene=fdxA;gene_biotype=protein_coding;gene_synonym=ML1489
AL450380.1	EMBL	CDS	1794099	1794425	.	-	0	ID=cds-CAC30439.1;Parent=gene-fdxA;Dbxref=GOA:Q9CBX7,InterPro:IPR000813,InterPro:IPR001450,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:Q9CBX7,NCBI_GP:CAC30439.1;Name=CAC30439.1;Note=Highly similar to many ferredoxins including: Mycobacterium smegmatis SW:FER_MYCSM (P00215) (106 aa)%3B Fasta score E(): 0%2C 86.7%25 identity in 105 aa overlap and Mycobacterium tuberculosis TR:O50433 (EMBL:AL010186) (108 aa)%3B Fasta score E(): 0%2C 90.6%25 identity in 106 aa overlap. Contains Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain. Contains PS00198 4Fe-4S ferredoxins.;gbkey=CDS;gene=fdxA;product=ferredoxin;protein_id=CAC30439.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1794258	1794329	.	-	.	ID=id-fdxA;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 37.60%2C E-value 2.8e-07;gbkey=misc_feature;gene=fdxA
AL450380.1	EMBL	sequence_feature	1794273	1794308	.	-	.	ID=id-fdxA-2;Note=PS00198 4Fe-4S ferredoxins;gbkey=misc_feature;gene=fdxA
AL450380.1	EMBL	ribosome_entry_site	1794434	1794438	.	-	.	ID=id-AL450380.1:1794434..1794438;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	1794945	1796943	.	+	.	ID=gene-fadH;Name=fadH;gbkey=Gene;gene=fadH;gene_biotype=pseudogene;gene_synonym=ML1490;pseudo=true
AL450380.1	EMBL	CDS	1794945	1796943	.	+	0	ID=cds-fadH;Parent=gene-fadH;Note=Possible pseudogene of M. tuberculosis orthologue fadH (Best blastx score 466);gbkey=CDS;gene=fadH;product=2%2C4-Dienoyl-CoA Reductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1797209	1797464	.	+	.	ID=gene-ML1491;Name=ML1491;gbkey=Gene;gene=ML1491;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1797209	1797464	.	+	0	ID=cds-ML1491;Parent=gene-ML1491;Note=Possible pseudogene of M. tuberculosis orthologue Rv1174c (Best blastx score 115);gbkey=CDS;gene=ML1491;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1797612	1800203	.	-	.	ID=gene-ML1492;Name=ML1492;gbkey=Gene;gene=ML1492;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1797612	1800203	.	-	0	ID=cds-CAC30442.1;Parent=gene-ML1492;Dbxref=GOA:Q9CBX6,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR013785,InterPro:IPR019939,InterPro:IPR019940,InterPro:IPR020050,NCBI_GP:CAC30442.1;Name=CAC30442.1;Note=Highly similar to many proteins of undefined function including: Streptomyces coelicolor TR:CAB88436 (EMBL:AL353815) (867 aa)%3B Fasta score E(): 0%2C 62.5%25 identity in 839 aa overlap and Mycobacterium tuberculosis TR:O50429 (EMBL:AL010186) (856 aa)%3B Fasta score E(): 0%2C 88.3%25 identity in 846 aa overlap.;gbkey=CDS;gene=ML1492;product=conserved hypothetical protein;protein_id=CAC30442.1;transl_table=11
AL450380.1	EMBL	pseudogene	1800422	1801355	.	+	.	ID=gene-PE-5;Name=PE;gbkey=Gene;gene=PE;gene_biotype=pseudogene;gene_synonym=ML1493;pseudo=true
AL450380.1	EMBL	CDS	1800422	1801355	.	+	0	ID=cds-PE-4;Parent=gene-PE-5;Note=Possible pseudogene of M. tuberculosis orthologue PE (Best blastx score 265);gbkey=CDS;gene=PE;product=PE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1801370	1801723	.	-	.	ID=gene-ML1494;Name=ML1494;gbkey=Gene;gene=ML1494;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1801370	1801723	.	-	0	ID=cds-CAC30444.1;Parent=gene-ML1494;Dbxref=UniProtKB/TrEMBL:Q9CBX5,NCBI_GP:CAC30444.1;Name=CAC30444.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein RV1171 TR:O50427 (EMBL:AL010186) (120 aa)%3B Fasta score E(): 7.4e-24%2C 62.2%25 identity in 111 aa overlap. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1494;product=conserved membrane protein;protein_id=CAC30444.1;transl_table=11
AL450380.1	EMBL	gene	1801888	1802814	.	-	.	ID=gene-ML1495;Name=ML1495;gbkey=Gene;gene=ML1495;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1801888	1802814	.	-	0	ID=cds-CAC30445.1;Parent=gene-ML1495;Dbxref=GOA:Q9CBX4,InterPro:IPR003737,InterPro:IPR017810,InterPro:IPR024078,NCBI_GP:CAC30445.1;Name=CAC30445.1;Note=Highly similar to several proteins of unknown function including: Streptomyces lincolnensis LmbE TR:Q54358 (EMBL:X79146) (270 aa)%3B Fasta score E(): 7.4e-13%2C 32.4%25 identity in 275 aa overlap and Mycobacterium tuberculosis RV1170 TR:O50426 (EMBL:AL010186) (303 aa)%3B Fasta score E(): 0%2C 76.9%25 identity in 307 aa overlap.%3B~Similar to ML2391;gbkey=CDS;gene=ML1495;product=conserved hypothetical protein;protein_id=CAC30445.1;transl_table=11
AL450380.1	EMBL	pseudogene	1802954	1803559	.	+	.	ID=gene-ML1496;Name=ML1496;gbkey=Gene;gene=ML1496;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1802954	1803559	.	+	0	ID=cds-ML1496;Parent=gene-ML1496;Note=Possible pseudogene of M. tuberculosis orthologue Rv1167c (Best blastx score 300);gbkey=CDS;gene=ML1496;product=putative transcriptional regulator (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1803621	1805474	.	-	.	ID=gene-ML1497;Name=ML1497;gbkey=Gene;gene=ML1497;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1803621	1805474	.	-	0	ID=cds-CAC30447.1;Parent=gene-ML1497;Dbxref=GOA:Q9CBX3,InterPro:IPR000914,UniProtKB/TrEMBL:Q9CBX3,NCBI_GP:CAC30447.1;Name=CAC30447.1;Note=Similar to several proteins of undefined function e.g. Mycobacterium tuberculosis RV1166 TR:O50422 (EMBL:AL01018) (635 aa)%3B Fasta score E(): 0%2C 80.4%25 identity in 632 aa overlap. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=ML1497;product=possible secreted protein;protein_id=CAC30447.1;transl_table=11
AL450380.1	EMBL	gene	1805541	1807427	.	-	.	ID=gene-ML1498;Name=ML1498;gbkey=Gene;gene=ML1498;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1805541	1807427	.	-	0	ID=cds-CAC30448.1;Parent=gene-ML1498;Dbxref=GOA:Q9CBX2,InterPro:IPR000640,InterPro:IPR000795,InterPro:IPR004161,InterPro:IPR005225,InterPro:IPR006298,InterPro:IPR009000,InterPro:IPR009022,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CBX2,NCBI_GP:CAC30448.1;Name=CAC30448.1;Note=Highly similar to several GTP-binding proteins including: Escherichia coli SW:TYPA_ECOLI (P32132) (591 aa)%3B Fasta score E(): 0%2C 46.1%25 identity in 610 aa overlap which belongs to the GTP-binding elongation factor family and Mycobacterium tuberculosis hypothetical protein RV1165 TR:O06563 (EMBL:Z95584) (628 aa)%3B Fasta score E(): 0%2C 85.2%25 identity in 628 aa overlap. Contains Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family. Contains PS00301 GTP-binding elongation factors signature. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML1498;product=possible GTP-binding%2C protein elongation factor;protein_id=CAC30448.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1806183	1807427	.	-	.	ID=id-ML1498;Note=Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family%2C score 269.30%2C E-value 5.1e-77;gbkey=misc_feature;gene=ML1498
AL450380.1	EMBL	sequence_feature	1807257	1807304	.	-	.	ID=id-ML1498-2;Note=PS00301 GTP-binding elongation factors signature;gbkey=misc_feature;gene=ML1498
AL450380.1	EMBL	sequence_feature	1807377	1807400	.	-	.	ID=id-ML1498-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1498
AL450380.1	EMBL	pseudogene	1807552	1808253	.	-	.	ID=gene-narI;Name=narI;gbkey=Gene;gene=narI;gene_biotype=pseudogene;gene_synonym=ML1499;pseudo=true
AL450380.1	EMBL	CDS	1807552	1808253	.	-	0	ID=cds-narI;Parent=gene-narI;Note=Possible pseudogene of M. tuberculosis orthologue narI (Best blastx score 222);gbkey=CDS;gene=narI;product=nitrate reductase [gamma] chain (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1808279	1808871	.	-	.	ID=gene-narJ;Name=narJ;gbkey=Gene;gene=narJ;gene_biotype=pseudogene;gene_synonym=ML1500;pseudo=true
AL450380.1	EMBL	CDS	1808279	1808871	.	-	0	ID=cds-narJ;Parent=gene-narJ;Note=Possible pseudogene of M. tuberculosis orthologue narJ (Best blastx score 371);gbkey=CDS;gene=narJ;product=nitrate reductase [delta] chain (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1809058	1810600	.	-	.	ID=gene-narH;Name=narH;gbkey=Gene;gene=narH;gene_biotype=pseudogene;gene_synonym=ML1501;pseudo=true
AL450380.1	EMBL	CDS	1809058	1810600	.	-	0	ID=cds-narH;Parent=gene-narH;Note=Possible pseudogene of M. tuberculosis orthologue narH (Best blastx score 717);gbkey=CDS;gene=narH;product=nitrate reductase [beta] chain (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1810603	1814263	.	-	.	ID=gene-narG;Name=narG;gbkey=Gene;gene=narG;gene_biotype=pseudogene;gene_synonym=ML1502;pseudo=true
AL450380.1	EMBL	CDS	1810603	1814263	.	-	0	ID=cds-narG;Parent=gene-narG;Note=Possible pseudogene of M. tuberculosis orthologue narG (Best blastx score 864);gbkey=CDS;gene=narG;product=nitrate reductase [alpha] subunit (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1814654	1814986	.	-	.	ID=gene-mutT2;Name=mutT2;gbkey=Gene;gene=mutT2;gene_biotype=pseudogene;gene_synonym=ML1503;pseudo=true
AL450380.1	EMBL	CDS	1814654	1814986	.	-	0	ID=cds-mutT2;Parent=gene-mutT2;Note=Possible pseudogene of M. tuberculosis orthologue mutT2 (Best blastx score 187);gbkey=CDS;gene=mutT2;product=MutT homologue (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1815091	1815375	.	+	.	ID=gene-ML1503A;Name=ML1503A;gbkey=Gene;gene=ML1503A;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1815091	1815375	.	+	0	ID=cds-CAC30454.1;Parent=gene-ML1503A;Dbxref=GOA:Q9CBX1,InterPro:IPR001533,NCBI_GP:CAC30454.1;Name=CAC30454.1;Note=Unknown but orthologous to M. tuberculosis Rv1159A and similar to hypothetical proteins in Streptomyces coelicolor (SC5C7.25) and archaebacteria. FASTA scores: Rv1159A E(): 9e-33%2C 66/93 aa (70%25) identical%2C and gp|AL03151 5AL031515|AL031515_25 Streptomyces coelicolor (101 aa) E(): 1.9e-06%3B 34.831%25 identity in 89 aa overlap;gbkey=CDS;gene=ML1503A;product=conserved hypothetical protein;protein_id=CAC30454.1;transl_table=11
AL450380.1	EMBL	gene	1815362	1816654	.	-	.	ID=gene-ML1504;Name=ML1504;gbkey=Gene;gene=ML1504;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1815362	1816654	.	-	0	ID=cds-CAC30455.1;Parent=gene-ML1504;Dbxref=GOA:Q9CBX0,InterPro:IPR018584,UniProtKB/TrEMBL:Q9CBX0,NCBI_GP:CAC30455.1;Name=CAC30455.1;Note=Highly similar to several proteins of undefined function e.g. Mycobacterium tuberculosis possible membrane protein RV1159 TR:O06557 (EMBL:Z95584) (431 aa)%3B Fasta score E(): 0%2C 75.7%25 identity in 420 aa overlap. Contains multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1504;product=probable conserved membrane protein;protein_id=CAC30455.1;transl_table=11
AL450380.1	EMBL	gene	1816758	1817306	.	+	.	ID=gene-ML1505;Name=ML1505;gbkey=Gene;gene=ML1505;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1816758	1817306	.	+	0	ID=cds-CAC30456.1;Parent=gene-ML1505;Dbxref=UniProtKB/TrEMBL:Q9CBW9,NCBI_GP:CAC30456.1;Name=CAC30456.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein RV1158C TR:O06556 (EMBL:Z95584) (227 aa)%3B Fasta score E(): 1.1e-16%2C 51.7%25 identity in 236 aa overlap. Note the predicted product of this CDS is rich in the amino acids Pro and Ala and displays multiple ProAla repeats.;gbkey=CDS;gene=ML1505;product=conserved hypothetical Proline rich protein;protein_id=CAC30456.1;transl_table=11
AL450380.1	EMBL	repeat_region	1816851	1816892	.	+	.	ID=id-ML1505;Note=7 copies of 6 bp tandem repeat%2C Consensus GCACCT;gbkey=repeat_region;gene=ML1505
AL450380.1	EMBL	gene	1817334	1818380	.	+	.	ID=gene-ML1506;Name=ML1506;gbkey=Gene;gene=ML1506;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1817334	1818380	.	+	0	ID=cds-CAC30457.1;Parent=gene-ML1506;Dbxref=UniProtKB/TrEMBL:Q9CBW8,NCBI_GP:CAC30457.1;Name=CAC30457.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein RV1157C TR:O06555 (EMBL:Z95584) (371 aa)%3B Fasta score E(): 0%2C 68.0%25 identity in 369 aa overlap. Note the predicted product of this CDS is rich in the amino acids Pro.;gbkey=CDS;gene=ML1506;product=conserved hypothetical protein;protein_id=CAC30457.1;transl_table=11
AL450380.1	EMBL	pseudogene	1818582	1819129	.	-	.	ID=gene-ML1507;Name=ML1507;gbkey=Gene;gene=ML1507;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1818582	1819129	.	-	0	ID=cds-ML1507;Parent=gene-ML1507;Note=Possible pseudogene of M. tuberculosis orthologue Rv1156 (Best blastx score 351);gbkey=CDS;gene=ML1507;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1819557	1820048	.	-	.	ID=gene-ML1508;Name=ML1508;gbkey=Gene;gene=ML1508;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1819557	1820048	.	-	0	ID=cds-CAC30459.1;Parent=gene-ML1508;Dbxref=GOA:Q9CBW7,InterPro:IPR011576,InterPro:IPR012349,InterPro:IPR019920,UniProtKB/TrEMBL:Q9CBW7,NCBI_GP:CAC30459.1;Name=CAC30459.1;Note=Highly similar to several proteins of undefined function including M. tuberculosis RV1155 TR:O06553 (EMBL:Z95584) (147 aa)%3B Fasta score E(): 0%2C 87.8%25 identity in 147 aa overlap and Streptomyces coelicolor TR:Q9XAG1 (EMBL:AL079356) (144 aa)%3B Fasta score E(): 5.6e-25%2C 54.3%25 identity in 140 aa overlap.;gbkey=CDS;gene=ML1508;product=conserved hypothetical protein;protein_id=CAC30459.1;transl_table=11
AL450380.1	EMBL	pseudogene	1819945	1820608	.	+	.	ID=gene-ML1509;Name=ML1509;gbkey=Gene;gene=ML1509;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1819945	1820608	.	+	0	ID=cds-ML1509;Parent=gene-ML1509;Note=Possible pseudogene of M. tuberculosis orthologue Rv1154c (Best blastx score 204);gbkey=CDS;gene=ML1509;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1820848	1821188	.	-	.	ID=gene-ML1510;Name=ML1510;gbkey=Gene;gene=ML1510;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1820848	1821188	.	-	0	ID=cds-ML1510;Parent=gene-ML1510;Note=Possible pseudogene of M. tuberculosis orthologue Rv1152 (Best blastx score 173);gbkey=CDS;gene=ML1510;product=transcriptional regulator (GntR family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1821243	1821956	.	+	.	ID=gene-ML1511;Name=ML1511;gbkey=Gene;gene=ML1511;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1821243	1821956	.	+	0	ID=cds-CAC30462.1;Parent=gene-ML1511;Dbxref=GOA:Q9CBW6,InterPro:IPR003000,InterPro:IPR026590,InterPro:IPR026591,InterPro:IPR027546,InterPro:IPR029035,NCBI_GP:CAC30462.1;Name=CAC30462.1;Note=Highly similar to several proteins of undefined function including: Aquifex aeolicus TR:O67919 (EMBL:AE000776) (239 aa)%3B Fasta score E(): 0%2C 47.7%25 identity in 235 aa overlap and Mycobacterium tuberculosis RV1151C TR:O06549 (EMBL:Z95584) (237 aa)%3B Fasta score E(): 0%2C 85.2%25 identity in 237 aa overlap. Contains Pfam match to entry PF02146 SIR2%2C Sir2 family.;gbkey=CDS;gene=ML1511;product=conserved hypothetical protein;protein_id=CAC30462.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1821264	1821794	.	+	.	ID=id-ML1511;Note=Pfam match to entry PF02146 SIR2%2C Sir2 family%2C score 265.90%2C E-value 5.3e-76;gbkey=misc_feature;gene=ML1511
AL450380.1	EMBL	repeat_region	1821848	1822910	.	-	.	ID=id-AL450380.1:1821848..1822910;Note=REPLEP region 10%2C 3'-end most similar to REPLEP8;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	1821975	1822002	.	-	.	ID=id-AL450380.1:1821975..1822002;Note=28 bp subsequence of 45 bp REPLEP-associated sequence;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	1822003	1822883	.	-	.	ID=id-AL450380.1:1822003..1822883;Note=Dispersed repeat%2C REPLEP%2C copy 10;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	1822884	1822910	.	-	.	ID=id-AL450380.1:1822884..1822910;Note=27 bp subsequence of 45 bp REPLEP-associated sequence;gbkey=repeat_region
AL450380.1	EMBL	gene	1822931	1824607	.	-	.	ID=gene-ML1512;Name=ML1512;gbkey=Gene;gene=ML1512;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1822931	1824607	.	-	0	ID=cds-CAC30463.1;Parent=gene-ML1512;Dbxref=GOA:Q9CBW5,InterPro:IPR001279,InterPro:IPR004613,InterPro:IPR011108,UniProtKB/TrEMBL:Q9CBW5,NCBI_GP:CAC30463.1;Name=CAC30463.1;Note=Highly similar to many proteins of undefined function including: Bacillus subtilis SW:YKQC_BACSU (Q45493) (555 aa)%3B Fasta score E(): 0%2C 36.9%25 identity in 547 aa overlap and Mycobacterium tuberculosis RV2752C TR:O33294 (EMBL:AL008967) (558 aa)%3B Fasta score E(): 0%2C 89.1%25 identity in 558 aa overlap. Contains Pfam match to entry PF02147 UPF0036%2C Uncharacterized protein family UPF0036. Contains Pfam match to entry PF00753 lactamase_B%2C Metallo-beta-lactamase superfamily.;gbkey=CDS;gene=ML1512;product=conserved hypothetical protein;protein_id=CAC30463.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1822937	1823926	.	-	.	ID=id-ML1512;Note=Pfam match to entry PF02147 UPF0036%2C Uncharacterized protein family UPF0036%2C score 306.20%2C E-value 4e-88;gbkey=misc_feature;gene=ML1512
AL450380.1	EMBL	sequence_feature	1823942	1824538	.	-	.	ID=id-ML1512-2;Note=Pfam match to entry PF00753 lactamase_B%2C Metallo-beta-lactamase superfamily%2C score 117.00%2C E-value 3.6e-31;gbkey=misc_feature;gene=ML1512
AL450380.1	EMBL	gene	1824627	1825529	.	-	.	ID=gene-dapA;Name=dapA;gbkey=Gene;gene=dapA;gene_biotype=protein_coding;gene_synonym=ML1513
AL450380.1	EMBL	CDS	1824627	1825529	.	-	0	ID=cds-CAC30464.1;Parent=gene-dapA;Dbxref=GOA:Q9CBW4,InterPro:IPR002220,InterPro:IPR005263,InterPro:IPR013785,InterPro:IPR020624,InterPro:IPR020625,NCBI_GP:CAC30464.1;Name=CAC30464.1;Note=Highly similar to many dihydrodipicolinate synthases including: Brevibacterium lactofermentum SW:DAPA_BRELA (P40109) (301 aa)%3B Fasta score E(): 0%2C 58.0%25 identity in 288 aa overlap and Mycobacterium tuberculosis RV2753C TR:O33295 (EMBL:AL008967) (300 aa)%3B Fasta score E(): 0%2C 86.7%25 identity in 300 aa overlap. Contains Pfam match to entry PF00701 DHDPS%2C Dihydrodipicolinate synthetase family. Contains PS00665 Dihydrodipicolinate synthetase signature 1. Contains PS00666 Dihydrodipicolinate synthetase signature 2.;gbkey=CDS;gene=dapA;product=dihydrodipicolinate synthase;protein_id=CAC30464.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1824687	1825436	.	-	.	ID=id-dapA;Note=Pfam match to entry PF00701 DHDPS%2C Dihydrodipicolinate synthetase family%2C score 321.60%2C E-value 9e-93;gbkey=misc_feature;gene=dapA
AL450380.1	EMBL	sequence_feature	1825011	1825103	.	-	.	ID=id-dapA-2;Note=PS00666 Dihydrodipicolinate synthetase signature 2;gbkey=misc_feature;gene=dapA
AL450380.1	EMBL	sequence_feature	1825335	1825388	.	-	.	ID=id-dapA-3;Note=PS00665 Dihydrodipicolinate synthetase signature 1;gbkey=misc_feature;gene=dapA
AL450380.1	EMBL	gene	1825645	1826409	.	-	.	ID=gene-ML1514;Name=ML1514;gbkey=Gene;gene=ML1514;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1825645	1826409	.	-	0	ID=cds-CAC30465.1;Parent=gene-ML1514;Dbxref=GOA:Q9CBW3,InterPro:IPR003669,NCBI_GP:CAC30465.1;Name=CAC30465.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv2754c or MTV002.19C TR:O33296 (EMBL:AL008967) (250 aa) fasta scores: E(): 0%2C 81.5%25 id in 254 aa and to Brevibacterium lactofermentum hypothetical protein in dapB-dap intergenic region SW:YDAP_BRELA (P40111) (250 aa) fasta scores: E(): 0%2C 59.4%25 id in 249 aa. Similar to mycobacteriophage proteins%3B Mycobacteriophage D29 protein 48 SW:VG48_BPMD2 (O64238) (235 aa) fasta scores: E(): 4.9e-30%2C 43.8%25 id in 249 aa and Mycobacteriophage L5 protein 48 SW:VG48_BPML5 (Q05259) (243 aa) fasta scores: E(): 3.5e-29%2C 46.4%25 id in 211 aa. Shows weaker similarity to Bacteriophage phi-C31 gp16 TR:Q9ZX92 (EMBL:AJ006589) (237 aa) fasta scores: E(): 2.9e-15%2C 43.8%25 id in 219 aa.;gbkey=CDS;gene=ML1514;product=putative mycobacteriophage protein;protein_id=CAC30465.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1826416	1826420	.	-	.	ID=id-AL450380.1:1826416..1826420;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	1828945	1829969	.	-	.	ID=gene-ML1515;Name=ML1515;gbkey=Gene;gene=ML1515;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1828945	1829969	.	-	0	ID=cds-ML1515;Parent=gene-ML1515;Note=Possible pseudogene of M. tuberculosis orthologue Rv2761c (Best blastx score 328);gbkey=CDS;gene=ML1515;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1829955	1831155	.	-	.	ID=gene-hsdM;Name=hsdM;gbkey=Gene;gene=hsdM;gene_biotype=pseudogene;gene_synonym=ML1516;pseudo=true
AL450380.1	EMBL	CDS	1829955	1831155	.	-	0	ID=cds-hsdM;Parent=gene-hsdM;Note=Possible pseudogene of M. tuberculosis orthologue hsdM (Best blastx score 272);gbkey=CDS;gene=hsdM;product=type I restriction/modification system DNA (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1831393	1831674	.	-	.	ID=gene-ML1517;Name=ML1517;gbkey=Gene;gene=ML1517;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1831393	1831674	.	-	0	ID=cds-CAC30468.1;Parent=gene-ML1517;Dbxref=InterPro:IPR009351,UniProtKB/TrEMBL:Q9CBW2,NCBI_GP:CAC30468.1;Name=CAC30468.1;Note=function unknown.;gbkey=CDS;gene=ML1517;product=hypothetical protein;protein_id=CAC30468.1;transl_table=11
AL450380.1	EMBL	gene	1832476	1832973	.	-	.	ID=gene-folA;Name=folA;gbkey=Gene;gene=folA;gene_biotype=protein_coding;gene_synonym=ML1518
AL450380.1	EMBL	CDS	1832476	1832973	.	-	0	ID=cds-CAC30469.1;Parent=gene-folA;Dbxref=GOA:Q9CBW1,InterPro:IPR001796,InterPro:IPR012259,InterPro:IPR017925,InterPro:IPR024072,NCBI_GP:CAC30469.1;Name=CAC30469.1;Note=Highly similar to many dihydrofolate reductases (EC 1.5.1.3) including: Escherichia coli SW:DYR_ECOLI (P00379) (159 aa)%3B Fasta score E(): 2e-15%2C 38.4%25 identity in 146 aa overlap and several reductases from Mycobacteria including M. tuberculosis RV2763C TR:O30463 (EMBL:AF006616) (181 aa)%3B Fasta score E(): 0%2C 68.9%25 identity in 161 aa overlap and M. avium TR:O30463. Contains Pfam match to entry PF00186 DiHfolate_red%2C Dihydrofolate reductase. Contains PS00075 Dihydrofolate reductase signature.;gbkey=CDS;gene=folA;product=dihydrofolate reductase;protein_id=CAC30469.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1832608	1832961	.	-	.	ID=id-folA;Note=Pfam match to entry PF00186 DiHfolate_red%2C Dihydrofolate reductase%2C score 159.30%2C E-value 2.4e-45;gbkey=misc_feature;gene=folA
AL450380.1	EMBL	sequence_feature	1832863	1832931	.	-	.	ID=id-folA-2;Note=PS00075 Dihydrofolate reductase signature;gbkey=misc_feature;gene=folA
AL450380.1	EMBL	ribosome_entry_site	1832982	1832986	.	-	.	ID=id-AL450380.1:1832982..1832986;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1833026	1833826	.	-	.	ID=gene-thyA;Name=thyA;gbkey=Gene;gene=thyA;gene_biotype=protein_coding;gene_synonym=ML1519
AL450380.1	EMBL	CDS	1833026	1833826	.	-	0	ID=cds-CAC30470.1;Parent=gene-thyA;Dbxref=GOA:Q9CBW0,InterPro:IPR000398,InterPro:IPR020940,InterPro:IPR023451,NCBI_GP:CAC30470.1;Name=CAC30470.1;Note=Highly similar to many thymidylate synthases (EC 2.1.1.45)involved in deoxyribonucleotide biosynthesis including: Escherichia coli SW:TYSY_ECOLI (P00470) (264 aa)%3B Fasta score E(): 0%2C 66.3%25 identity in 261 aa overlap and Mycobacterium tuberculosis RV2764C SW:TYSY_MYCTU (O33306) (263 aa)%3B Fasta score E(): 0%2C 85.5%25 identity in 262 aa overlap. Contains Pfam match to entry PF00303 thymidylat_synt%2C Thymidylate synthase. Contains PS00091 Thymidylate synthase active site.;gbkey=CDS;gene=thyA;product=thymidylate synthase;protein_id=CAC30470.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1833029	1833814	.	-	.	ID=id-thyA;Note=Pfam match to entry PF00303 thymidylat_synt%2C Thymidylate synthase%2C score 532.70%2C E-value 2.6e-156;gbkey=misc_feature;gene=thyA
AL450380.1	EMBL	sequence_feature	1833356	1833442	.	-	.	ID=id-thyA-2;Note=PS00091 Thymidylate synthase active site;gbkey=misc_feature;gene=thyA
AL450380.1	EMBL	pseudogene	1833933	1834659	.	+	.	ID=gene-ML1520;Name=ML1520;gbkey=Gene;gene=ML1520;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1833933	1834659	.	+	0	ID=cds-ML1520;Parent=gene-ML1520;Note=Possible pseudogene of M. tuberculosis orthologue Rv2765 (Best blastx score 188);gbkey=CDS;gene=ML1520;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1834918	1836701	.	-	.	ID=gene-ML1521;Name=ML1521;gbkey=Gene;gene=ML1521;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1834918	1836701	.	-	0	ID=cds-ML1521;Parent=gene-ML1521;Note=Possible pseudogene of M. tuberculosis orthologue fadE (Best blastx score 108);gbkey=CDS;gene=ML1521;product=acyl-CoA dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1837222	1837623	.	-	.	ID=gene-fabG5;Name=fabG5;gbkey=Gene;gene=fabG5;gene_biotype=pseudogene;gene_synonym=ML1522;pseudo=true
AL450380.1	EMBL	CDS	1837222	1837623	.	-	0	ID=cds-fabG5;Parent=gene-fabG5;Note=Possible pseudogene of M. tuberculosis orthologue fabG5 (Best blastx score 250);gbkey=CDS;gene=fabG5;product=3-oxoacyl-[ACP] reductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1837820	1838110	.	-	.	ID=gene-ML1523;Name=ML1523;gbkey=Gene;gene=ML1523;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1837820	1838110	.	-	0	ID=cds-CAC30474.1;Parent=gene-ML1523;Dbxref=UniProtKB/TrEMBL:Q9CBV9,NCBI_GP:CAC30474.1;Name=CAC30474.1;Note=function unknown.;gbkey=CDS;gene=ML1523;product=hypothetical protein;protein_id=CAC30474.1;transl_table=11
AL450380.1	EMBL	pseudogene	1838487	1839725	.	-	.	ID=gene-ML1524;Name=ML1524;gbkey=Gene;gene=ML1524;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1838487	1839725	.	-	0	ID=cds-ML1524;Parent=gene-ML1524;Note=Possible pseudogene of M. tuberculosis orthologue fadD (Best blastx score 85). Note M. tuberculosis has no fadD gene at this location;gbkey=CDS;gene=ML1524;product=acyl-CoA synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1840011	1840466	.	-	.	ID=gene-ML1525;Name=ML1525;gbkey=Gene;gene=ML1525;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1840011	1840466	.	-	0	ID=cds-CAC30476.1;Parent=gene-ML1525;Dbxref=GOA:Q9CBV8,InterPro:IPR005025,InterPro:IPR029039,UniProtKB/TrEMBL:Q9CBV8,NCBI_GP:CAC30476.1;Name=CAC30476.1;Note=Similar to hypothetical proteins from Streptomyces coelicolor TR:Q9RD46 (EMBL:AL133424) (151 aa)%3B Fasta score E(): 1.3e-28%2C 56.1%25 identity in 148 aa overlap and Mycobacterium tuberculosis RV2771C TR:O33313 (EMBL:AL008967) (150 aa)%3B Fasta score E(): 2.2e-26%2C 52.7%25 identity in 148 aa overlap.;gbkey=CDS;gene=ML1525;product=conserved hypothetical protein;protein_id=CAC30476.1;transl_table=11
AL450380.1	EMBL	gene	1840474	1840956	.	-	.	ID=gene-ML1526;Name=ML1526;gbkey=Gene;gene=ML1526;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1840474	1840956	.	-	0	ID=cds-CAC30477.1;Parent=gene-ML1526;Dbxref=InterPro:IPR011990,UniProtKB/TrEMBL:Q9CBV7,NCBI_GP:CAC30477.1;Name=CAC30477.1;Note=Highly similar to many proteins of undefined function e.g. Mycobacterium tuberculosis RV2772C TR:O33314 (EMBL:AL008967) (157 aa)%3B Fasta score E(): 0%2C 76.6%25 identity in 154 aa overlap. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1526;product=conserved membrane protein;protein_id=CAC30477.1;transl_table=11
AL450380.1	EMBL	pseudogene	1840959	1841689	.	-	.	ID=gene-dapB;Name=dapB;gbkey=Gene;gene=dapB;gene_biotype=pseudogene;gene_synonym=ML1527;pseudo=true
AL450380.1	EMBL	CDS	1840959	1841689	.	-	0	ID=cds-dapB;Parent=gene-dapB;Note=Possible pseudogene of M. tuberculosis orthologue dapB (Best blastx score 605);gbkey=CDS;gene=dapB;product=dihydrodipicolinate reductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1842576	1843883	.	+	.	ID=gene-ML1528;Name=ML1528;gbkey=Gene;gene=ML1528;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1842576	1843883	.	+	0	ID=cds-ML1528;Parent=gene-ML1528;Note=Possible pseudogene of M. tuberculosis orthologue Rv1128c (Best blastx score 194);gbkey=CDS;gene=ML1528;product=REP-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1843926	1844860	.	-	.	ID=gene-ML1529;Name=ML1529;gbkey=Gene;gene=ML1529;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1843926	1844860	.	-	0	ID=cds-ML1529;Parent=gene-ML1529;Note=Possible pseudogene of M. tuberculosis orthologue Rv2776c (Best blastx score 445);gbkey=CDS;gene=ML1529;product=probable oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1845376	1846348	.	-	.	ID=gene-ML1530;Name=ML1530;gbkey=Gene;gene=ML1530;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1845376	1846348	.	-	0	ID=cds-ML1530;Parent=gene-ML1530;Note=Possible pseudogene of M. tuberculosis orthologue Rv2777c (Best blastx score 581);gbkey=CDS;gene=ML1530;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1846358	1846792	.	-	.	ID=gene-ML1531;Name=ML1531;gbkey=Gene;gene=ML1531;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1846358	1846792	.	-	0	ID=cds-ML1531;Parent=gene-ML1531;Note=Possible pseudogene of M. tuberculosis orthologue Rv2779c (Best blastx score 211);gbkey=CDS;gene=ML1531;product=transcriptional regulator (Lrp/AsnC family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1846966	1848081	.	+	.	ID=gene-ald;Name=ald;gbkey=Gene;gene=ald;gene_biotype=protein_coding;gene_synonym=ML1532
AL450380.1	EMBL	CDS	1846966	1848081	.	+	0	ID=cds-CAC30483.1;Parent=gene-ald;Dbxref=GOA:Q9CBV6,InterPro:IPR007698,InterPro:IPR007886,InterPro:IPR008141,InterPro:IPR008142,InterPro:IPR008143,UniProtKB/TrEMBL:Q9CBV6,NCBI_GP:CAC30483.1;Name=CAC30483.1;Note=Highly similar to many alanine dehydrogenases (EC 1.4.1.1) including: Bacillus sphaericus SW:DHA_BACSH (P175566) (372 aa)%3B Fasta score E(): 0%2C 53.4%25 identity in 365 aa overlap and Mycobacterium tuberculosis RV2780 SW:DHA_MYCTU (P30234) (371 aa)%3B Fasta score E(): 0%2C 85.4%25 identity in 371 aa overlap. Contains Pfam match to entry PF01262 AlaDh_PNT%2C Alanine dehydrogenase/pyridine nucleotide transhydrogenase. Contains PS00837 Alanine dehydrogenase %26 pyridine nucleotide transhydrogenase signature 2. Contains PS00836 Alanine dehydrogenase %26 pyridine nucleotide transhydrogenase signature 1.;gbkey=CDS;gene=ald;product=L-alanine dehydrogenase;protein_id=CAC30483.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1846966	1848078	.	+	.	ID=id-ald;Note=Pfam match to entry PF01262 AlaDh_PNT%2C Alanine dehydrogenase/pyridine nucleotide transhydrogenase%2C score 771.40%2C E-value 3.6e-228;gbkey=misc_feature;gene=ald
AL450380.1	EMBL	sequence_feature	1846975	1847055	.	+	.	ID=id-ald-2;Note=PS00836 Alanine dehydrogenase %26 pyridine nucleotide transhydrogenase signature 1;gbkey=misc_feature;gene=ald
AL450380.1	EMBL	sequence_feature	1847482	1847559	.	+	.	ID=id-ald-3;Note=PS00837 Alanine dehydrogenase %26 pyridine nucleotide transhydrogenase signature 2;gbkey=misc_feature;gene=ald
AL450380.1	EMBL	repeat_region	1848089	1848865	.	-	.	ID=id-AL450380.1:1848089..1848865;Note=Dispersed repeat%2C RLEP%2C copy 24;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	1848855	1850737	.	-	.	ID=gene-PPE-7;Name=PPE;gbkey=Gene;gene=PPE;gene_biotype=pseudogene;gene_synonym=ML1533;pseudo=true
AL450380.1	EMBL	CDS	1848855	1850737	.	-	0	ID=cds-PPE-6;Parent=gene-PPE-7;Note=Possible pseudogene of M. tuberculosis orthologue PPE (Best blastx score 229);gbkey=CDS;gene=PPE;product=PPE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1850788	1851054	.	-	.	ID=gene-PE_PGRS-3;Name=PE_PGRS;gbkey=Gene;gene=PE_PGRS;gene_biotype=pseudogene;gene_synonym=ML1534;pseudo=true
AL450380.1	EMBL	CDS	1850788	1851054	.	-	0	ID=cds-PE_PGRS-3;Parent=gene-PE_PGRS-3;Note=Possible pseudogene of M. tuberculosis orthologue PE_PGRS (Best blastx score 80);gbkey=CDS;gene=PE_PGRS;product=PE_PGRS-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1851125	1851435	.	+	.	ID=gene-ML1535;Name=ML1535;gbkey=Gene;gene=ML1535;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1851125	1851435	.	+	0	ID=cds-ML1535;Parent=gene-ML1535;Note=Possible pseudogene of M. tuberculosis orthologue Rv1805c (Best blastx score 106);gbkey=CDS;gene=ML1535;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1851730	1853562	.	-	.	ID=gene-ML1536;Name=ML1536;gbkey=Gene;gene=ML1536;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1851730	1853562	.	-	0	ID=cds-CAC30487.1;Parent=gene-ML1536;Dbxref=GOA:Q9CBV5,InterPro:IPR000641,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR011990,InterPro:IPR023835,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CBV5,NCBI_GP:CAC30487.1;Name=CAC30487.1;Note=Highly similar to several Mycobacterium tuberculosis proteins of undefined function e.g. SW:YH98_MYCTU (O53947) (610 aa)%3B Fasta score E(): 0%2C 89.7%25 identity in 609 aa overlap. The C-terminus of this protein is also similar to several including: Bacillus subtilis stage V sporulation protein K SW:SP5K_BACSU (P27643) (322 aa)%3B Fasta score E(): 2.2e-20%2C 34.5%25 identity in 310 aa overlap. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML1536;product=conserved hypothetical protein;protein_id=CAC30487.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1852471	1852494	.	-	.	ID=id-ML1536;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1536
AL450380.1	EMBL	gene	1853559	1854764	.	-	.	ID=gene-ML1537;Name=ML1537;gbkey=Gene;gene=ML1537;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1853559	1854764	.	-	0	ID=cds-CAC30488.1;Parent=gene-ML1537;Dbxref=InterPro:IPR021368,UniProtKB/TrEMBL:Q9CBV4,NCBI_GP:CAC30488.1;Name=CAC30488.1;Note=Highly similar to a protein of unknown function from Mycobacterium tuberculosis RV1797 TR:O53946 (EMBL:AL022021) (406 aa)%3B Fasta score E(): 0%2C 68.5%25 identity in 406 aa overlap. Contains a possible N-terminal signal sequence and a possible membrane spanning hydrophobic domain. Contains PS00038 Myc-type%2C 'helix-loop-helix' dimerization domain signature.;gbkey=CDS;gene=ML1537;product=possible secreted protein;protein_id=CAC30488.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1854678	1854725	.	-	.	ID=id-ML1537;Note=PS00038 Myc-type%2C 'helix-loop-helix' dimerization domain signature;gbkey=misc_feature;gene=ML1537
AL450380.1	EMBL	gene	1854785	1856488	.	-	.	ID=gene-ML1538;Name=ML1538;gbkey=Gene;gene=ML1538;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1854785	1856488	.	-	0	ID=cds-CAC30489.1;Parent=gene-ML1538;Dbxref=GOA:Q9CBV3,InterPro:IPR000209,InterPro:IPR015500,InterPro:IPR023827,UniProtKB/TrEMBL:Q9CBV3,NCBI_GP:CAC30489.1;Name=CAC30489.1;Note=Highly similar to several from Mycobacterium tuberculosis including: a putative protease RV0291 TR:O53695 (EMBL:AL021930) (461 aa)%3B Fasta score E(): 0%2C 37.6%25 identity in 572 aa overlap and several proteins of undefined function e.g. RV1796 TR:O53945 (EMBL:AL022021) (585 aa)%3B Fasta score E(): 0%2C 73.1%25 identity in 572 aa overlap. Contains possible membrane spanning hydrophobic domain. Contains 2 Pfam matches to entry PF00082 Peptidase_S8%2C Subtilase family. Contains PS00136 Serine proteases. Contains PS00137 Serine proteases.%3B~Similar to ML2528 and ML0041;gbkey=CDS;gene=ML1538;product=possible protease;protein_id=CAC30489.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1854971	1855330	.	-	.	ID=id-ML1538;Note=Pfam match to entry PF00082 Peptidase_S8%2C Subtilase family%2C score 19.90%2C E-value 0.00015;gbkey=misc_feature;gene=ML1538
AL450380.1	EMBL	sequence_feature	1856090	1856122	.	-	.	ID=id-ML1538-2;Note=PS00137 Serine proteases;gbkey=misc_feature;gene=ML1538
AL450380.1	EMBL	sequence_feature	1856195	1856263	.	-	.	ID=id-ML1538-3;Note=Pfam match to entry PF00082 Peptidase_S8%2C Subtilase family%2C score 6.10%2C E-value 1.1;gbkey=misc_feature;gene=ML1538
AL450380.1	EMBL	sequence_feature	1856198	1856230	.	-	.	ID=id-ML1538-4;Note=PS00136 Serine proteases;gbkey=misc_feature;gene=ML1538
AL450380.1	EMBL	gene	1856520	1858031	.	-	.	ID=gene-ML1539;Name=ML1539;gbkey=Gene;gene=ML1539;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1856520	1858031	.	-	0	ID=cds-CAC30490.1;Parent=gene-ML1539;Dbxref=InterPro:IPR006707,InterPro:IPR024962,UniProtKB/TrEMBL:Q9CBV2,NCBI_GP:CAC30490.1;Name=CAC30490.1;Note=Similar to several Mycobacterium tuberculosis proteins of undefined function e.g. putative membrane protein RV1795 TR:O53944 (EMBL:AL022021) (503 aa)%3B Fasta score E(): 0%2C 76.9%25 identity in 503 aa overlap. Contains multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1539;product=probable membrane protein;protein_id=CAC30490.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1858039	1858044	.	-	.	ID=id-AL450380.1:1858039..1858044;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1858295	1859197	.	-	.	ID=gene-ML1540;Name=ML1540;gbkey=Gene;gene=ML1540;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1858295	1859197	.	-	0	ID=cds-CAC30491.1;Parent=gene-ML1540;Dbxref=InterPro:IPR025734,UniProtKB/TrEMBL:Q7AQ48,NCBI_GP:CAC30491.1;Name=CAC30491.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein RV1794 TR:O53943 (EMBL:AL022021) (300 aa)%3B Fasta score E(): 0%2C 88.0%25 identity in 300 aa overlap.;gbkey=CDS;gene=ML1540;product=conserved hypothetical protein;protein_id=CAC30491.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1859203	1859207	.	-	.	ID=id-AL450380.1:1859203..1859207;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	1860610	1860783	.	-	.	ID=gene-ML1541;Name=ML1541;gbkey=Gene;gene=ML1541;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1860610	1860783	.	-	0	ID=cds-ML1541;Parent=gene-ML1541;Note=Possible pseudogene of M. tuberculosis orthologue Rv1786 (Best blastx score 147);gbkey=CDS;gene=ML1541;product=Probable ferredoxin (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1861010	1862160	.	+	.	ID=gene-ML1542;Name=ML1542;gbkey=Gene;gene=ML1542;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1861010	1862160	.	+	0	ID=cds-ML1542;Parent=gene-ML1542;Note=Possible pseudogene of M. tuberculosis orthologue Rv1785c (Best blastx score 322);gbkey=CDS;gene=ML1542;product=Probable member of the cytochrome P450 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1862215	1866252	.	-	.	ID=gene-ML1543;Name=ML1543;gbkey=Gene;gene=ML1543;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1862215	1866252	.	-	0	ID=cds-CAC30494.1;Parent=gene-ML1543;Dbxref=GOA:Q7AQ47,InterPro:IPR002543,InterPro:IPR003593,InterPro:IPR023836,InterPro:IPR023837,InterPro:IPR027417,UniProtKB/TrEMBL:Q7AQ47,NCBI_GP:CAC30494.1;Name=CAC30494.1;Note=Highly similar%2C in parts%2C to several from Mycobacterium tuberculosis e.g. the C-terminus is similar to hypothetical protein TR:O53935 (EMBL:AL022021) (932 aa)%3B Fasta score E(): 0%2C 87.8%25 identity in 932 aa overlap. The N-terminus is similar to hypothetical protein TR:O53934 (EMBL:AL022021) (435 aa)%3B Fasta score E(): 0%2C 87.1%25 identity in 395 aa overlap. The C-terminus is also similar to several others e.g. Bacillus subtilis SW:SP3E_BACSU (P21458) (787 aa)%3B Fasta score E(): 3e-09%2C 24.0%25 identity in 391 aa overlap stage III sporulation protein E (SpoIIIE) a protein required for chromosome segregation. Contains possible N-terminal membrane spanning hydrophobic domains. Contains 2 Pfam matches to entry PF01580 FtsK_SpoIIIE%2C FtsK/SpoIIIE family. Contains 2 x PS00017 ATP/GTP-binding site motif A (P-loop).%3B~Similar to ML2535;gbkey=CDS;gene=ML1543;product=possible SpoIIIE-family membrane protein;protein_id=CAC30494.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1863034	1863918	.	-	.	ID=id-ML1543;Note=Pfam match to entry PF01580 FtsK_SpoIIIE%2C FtsK/SpoIIIE family%2C score 336.40%2C E-value 3.3e-97;gbkey=misc_feature;gene=ML1543
AL450380.1	EMBL	sequence_feature	1863736	1863759	.	-	.	ID=id-ML1543-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1543
AL450380.1	EMBL	sequence_feature	1864411	1865031	.	-	.	ID=id-ML1543-3;Note=Pfam match to entry PF01580 FtsK_SpoIIIE%2C FtsK/SpoIIIE family%2C score 98.50%2C E-value 1.3e-25;gbkey=misc_feature;gene=ML1543
AL450380.1	EMBL	sequence_feature	1864855	1864878	.	-	.	ID=id-ML1543-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1543
AL450380.1	EMBL	gene	1866369	1867889	.	-	.	ID=gene-ML1544;Name=ML1544;gbkey=Gene;gene=ML1544;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1866369	1867889	.	-	0	ID=cds-CAC30495.1;Parent=gene-ML1544;Dbxref=InterPro:IPR007795,UniProtKB/TrEMBL:Q7AQ46,NCBI_GP:CAC30495.1;Name=CAC30495.1;Note=Highly similar to many Mycobacterium tuberculosis proteins of unknown function including:RV1782 TR:O53933 (EMBL:AL022021) (506 aa)%3B Fasta score E(): 0%2C 82.6%25 identity in 506 aa overlap. Contains a possible membrane spanning hydrophobic domain.%3B~Similar to ML0054;gbkey=CDS;gene=ML1544;product=conserved membrane protein;protein_id=CAC30495.1;transl_table=11
AL450380.1	EMBL	pseudogene	1868321	1870341	.	+	.	ID=gene-ML1545;Name=ML1545;gbkey=Gene;gene=ML1545;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1868321	1870341	.	+	0	ID=cds-ML1545;Parent=gene-ML1545;Note=Possible pseudogene of M. tuberculosis orthologue Rv1781c (Best blastx score 285);gbkey=CDS;gene=ML1545;product=probable 4-[alpha]-glucanotransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	1870268	1871060	.	+	.	ID=id-AL450380.1:1870268..1871060;Note=Dispersed repeat%2C RLEP%2C copy 25;gbkey=repeat_region
AL450380.1	EMBL	gene	1870999	1871961	.	-	.	ID=gene-truB;Name=truB;gbkey=Gene;gene=truB;gene_biotype=protein_coding;gene_synonym=ML1546
AL450380.1	EMBL	CDS	1870999	1871961	.	-	0	ID=cds-CAC30497.1;Parent=gene-truB;Dbxref=GOA:Q9Z5I4,InterPro:IPR002501,InterPro:IPR014780,InterPro:IPR015225,InterPro:IPR015947,InterPro:IPR020103,NCBI_GP:CAC30497.1;Name=CAC30497.1;Note=Highly similar to many tRNA pseudouridine synthases B (EC 4.2.1.70) including: Escherichia coli SW:TRUB_ECOLI (X13270) (314 aa)%3B Fasta score E(): 1.7e-19%2C 36.4%25 identity in 316 aa overlap and Mycobacterium tuberculosis SW:TRUB_MYCTU (O33335) (298 aa)%3B Fasta score E(): 0%2C 74.1%25 identity in 293 aa overlap. Contains Pfam match to entry PF01509 TruB_N%2C TruB family pseudouridylate synthase (N terminal domain).;gbkey=CDS;gene=truB;product=tRNA pseudouridine 55 synthase;protein_id=CAC30497.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1871392	1871874	.	-	.	ID=id-truB;Note=Pfam match to entry PF01509 TruB_N%2C TruB family pseudouridylate synthase (N terminal domain)%2C score 237.30%2C E-value 2.2e-67;gbkey=misc_feature;gene=truB
AL450380.1	EMBL	gene	1871958	1872641	.	-	.	ID=gene-ML1547;Name=ML1547;gbkey=Gene;gene=ML1547;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1871958	1872641	.	-	0	ID=cds-CAC30498.1;Parent=gene-ML1547;Dbxref=GOA:Q7AQ45,InterPro:IPR003542,InterPro:IPR008278,UniProtKB/TrEMBL:Q7AQ45,NCBI_GP:CAC30498.1;Name=CAC30498.1;Note=Similar to a number of proteins essential for the production of iron chelators e.g. Escherichia coli enterobactin synthetase component D SW:ENTD_ECOLI (P19925) (209 aa)%3B Fasta score E(): 0.002%2C 29.4%25 identity in 177 aa overlap. Also similar to Streptomyces sp. L-proline 3-hydroxylase TR:O24813 (EMBL:AB007189) (208 aa)%3B Fasta score E(): 0%2C 50.7%25 identity in 209 aa overlap and a hypothetical protein from Mycobacterium tuberculosis RV2794C TR:O33336 (EMBL:AL008967) (227 aa)%3B Fasta score E(): 0%2C 79.7%25 identity in 227 aa overlap.;gbkey=CDS;gene=ML1547;product=conserved hypothetical protein;protein_id=CAC30498.1;transl_table=11
AL450380.1	EMBL	gene	1872638	1873603	.	-	.	ID=gene-ML1548;Name=ML1548;gbkey=Gene;gene=ML1548;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1872638	1873603	.	-	0	ID=cds-CAC30499.1;Parent=gene-ML1548;Dbxref=GOA:Q7AQ44,InterPro:IPR004843,InterPro:IPR029052,UniProtKB/TrEMBL:Q7AQ44,NCBI_GP:CAC30499.1;Name=CAC30499.1;Note=Highly similar to several proteins of unknown function including: Streptomyces coelicolor TR:O88028 (EMBL:AL031107) (295 aa)%3B Fasta score E(): 0%2C 54.4%25 identity in 285 aa overlap and Mycobacterium tuberculosis TR:O33337 (EMBL:AL00896) (324 aa)%3B Fasta score E(): 0%2C 87.4%25 identity in 318 aa overlap.;gbkey=CDS;gene=ML1548;product=conserved hypothetical protein;protein_id=CAC30499.1;transl_table=11
AL450380.1	EMBL	pseudogene	1873750	1874278	.	+	.	ID=gene-ML1549;Name=ML1549;gbkey=Gene;gene=ML1549;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1873750	1874278	.	+	0	ID=cds-ML1549;Parent=gene-ML1549;Note=Possible pseudogene of M. tuberculosis orthologue Rv2799 (Best blastx score 220);gbkey=CDS;gene=ML1549;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1874326	1875427	.	+	.	ID=gene-ML1550;Name=ML1550;gbkey=Gene;gene=ML1550;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1874326	1875427	.	+	0	ID=cds-ML1550;Parent=gene-ML1550;Note=Possible pseudogene of M. tuberculosis orthologue Rv2800 (Best blastx score 259);gbkey=CDS;gene=ML1550;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1875360	1875876	.	-	.	ID=gene-ML1551;Name=ML1551;gbkey=Gene;gene=ML1551;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1875360	1875876	.	-	0	ID=cds-ML1551;Parent=gene-ML1551;Note=Possible pseudogene of M. tuberculosis orthologue Rv2825c (Best blastx score 313)%3B~Also a possible pseudogene of M. tuberculosis orthologue Rv2828c.;gbkey=CDS;gene=ML1551;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1876260	1876987	.	+	.	ID=gene-echA16;Name=echA16;gbkey=Gene;gene=echA16;gene_biotype=pseudogene;gene_synonym=ML1552;pseudo=true
AL450380.1	EMBL	CDS	1876260	1876987	.	+	0	ID=cds-echA16;Parent=gene-echA16;Note=Possible pseudogene of M. tuberculosis orthologue echA16 (Best blastx score 202);gbkey=CDS;gene=echA16;product=enoyl-CoA hydratase/isomerase superfamily (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1877242	1878684	.	+	.	ID=gene-proS;Name=proS;gbkey=Gene;gene=proS;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1877242	1878684	.	+	0	ID=cds-CAC30504.1;Parent=gene-proS;Dbxref=GOA:Q9Z5I7,InterPro:IPR002314,InterPro:IPR002316,InterPro:IPR004154,InterPro:IPR004499,InterPro:IPR006195,InterPro:IPR016061,InterPro:IPR017449,NCBI_GP:CAC30504.1;Name=CAC30504.1;Note=Highly similar to many prolyl tRNA synthetases including: Clostridium sticklandii TR:CAB71307 (EMBL:AJ130879) (481 aa)%3B Fasta score E(): 0%2C 46.5%25 identity in 477 aa overlap and to parts of the Eukaryotic multifunctional aminoacyl-tRNA synthetases such as Homo sapiens (Human) SW:SYEP_HUMAN (P07814) (1440 aa)%3B Fasta score E(): 0%2C 44.5%25 identity in 467 aa overlap. Note codon 8 may offer an alternative translational start site. Contains Pfam match to entry PF00587 tRNA-synt_2b%2C tRNA synthetase class II (G%2C H%2C P%2C S and T).;gbkey=CDS;gene=proS;product=prolyl tRNA synthetase;protein_id=CAC30504.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1877251	1878354	.	+	.	ID=id-proS;Note=Pfam match to entry PF00587 tRNA-synt_2b%2C tRNA synthetase class II (G%2C H%2C P%2C S and T)%2C score -71.30%2C E-value 3.3;gbkey=misc_feature;gene=proS
AL450380.1	EMBL	pseudogene	1878738	1879694	.	-	.	ID=gene-ML1554;Name=ML1554;gbkey=Gene;gene=ML1554;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1878738	1879694	.	-	0	ID=cds-ML1554;Parent=gene-ML1554;Note=Possible pseudogene of M. tuberculosis orthologue Rv2837c (Best blastx score 178);gbkey=CDS;gene=ML1554;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1879669	1880163	.	-	.	ID=gene-ML1555;Name=ML1555;gbkey=Gene;gene=ML1555;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1879669	1880163	.	-	0	ID=cds-CAC30506.1;Parent=gene-ML1555;Dbxref=GOA:Q9Z5I8,InterPro:IPR000238,InterPro:IPR015946,InterPro:IPR020053,InterPro:IPR023799,NCBI_GP:CAC30506.1;Name=CAC30506.1;Note=Highly similar to several ribosome-binding factors essential for efficient processing of 16s rRNA including: Escherichia coli SW:RBFA_ECOLI (P09170) (132 aa)%3B Fasta score E(): 8.5e-05%2C 33.1%25 identity in 118 aa overlap and Mycobacterium tuberculosis RV2838C SW:RBFA_MYCTU (P71614) (183 aa)%3B Fasta score E(): 0%2C 75.6%25 identity in 160 aa overlap. Contains Pfam match to entry PF02033 RBFA%2C Ribosome-binding factor A. Contains PS01319 Ribosome-binding factor A signature.;gbkey=CDS;gene=ML1555;product=probable ribosome-binding factor;protein_id=CAC30506.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1879825	1880148	.	-	.	ID=id-ML1555;Note=Pfam match to entry PF02033 RBFA%2C Ribosome-binding factor A%2C score 201.90%2C E-value 9.8e-57;gbkey=misc_feature;gene=ML1555
AL450380.1	EMBL	sequence_feature	1879864	1879929	.	-	.	ID=id-ML1555-2;Note=PS01319 Ribosome-binding factor A signature;gbkey=misc_feature;gene=ML1555
AL450380.1	EMBL	ribosome_entry_site	1880173	1880177	.	-	.	ID=id-AL450380.1:1880173..1880177;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	1880177	1882951	.	-	.	ID=gene-infB;Name=infB;gbkey=Gene;gene=infB;gene_biotype=protein_coding;gene_synonym=ML1556
AL450380.1	EMBL	CDS	1880177	1882951	.	-	0	ID=cds-CAC30507.1;Parent=gene-infB;Dbxref=GOA:Q9Z5I9,InterPro:IPR000178,InterPro:IPR000795,InterPro:IPR004161,InterPro:IPR005225,InterPro:IPR006847,InterPro:IPR009000,InterPro:IPR015760,InterPro:IPR023115,InterPro:IPR027417,NCBI_GP:CAC30507.1;Name=CAC30507.1;Note=Highly similar in the C-terminus to many translation initiation factors e.g. Bacillus subtilis SW:IF2_BACSU (P17889) (716 aa)%3B Fasta score E(): 0%2C 45.5%25 identity in 686 aa overlap. Also highly similar over the whole range to Mycobacterium tuberculosis SW:IF2_MYCTU (P71613) (900 aa)%3B Fasta score E(): 0%2C 83.6%25 identity in 933 aa overlap. Contains Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family. Contains Pfam match to entry PF02131 IF2%2C Initiation factor 2. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=infB;product=initiation factor IF-2;protein_id=CAC30507.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1880201	1880602	.	-	.	ID=id-infB;Note=Pfam match to entry PF02131 IF2%2C Initiation factor 2%2C score 221.50%2C E-value 1.2e-62;gbkey=misc_feature;gene=infB
AL450380.1	EMBL	sequence_feature	1880675	1881694	.	-	.	ID=id-infB-2;Note=Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family%2C score 138.00%2C E-value 1.7e-37;gbkey=misc_feature;gene=infB
AL450380.1	EMBL	sequence_feature	1881644	1881667	.	-	.	ID=id-infB-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=infB
AL450380.1	EMBL	gene	1883016	1883336	.	-	.	ID=gene-ML1557;Name=ML1557;gbkey=Gene;gene=ML1557;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1883016	1883336	.	-	0	ID=cds-CAC30508.1;Parent=gene-ML1557;Dbxref=InterPro:IPR007393,UniProtKB/TrEMBL:Q7AQ43,NCBI_GP:CAC30508.1;Name=CAC30508.1;Note=Highly similar to several proteins of undefined function including: Mycobacterium tuberculosis RV2840C TR:P71612 (EMBL:Z81331) (99 aa)%3B Fasta score E(): 1.7e-30%2C 81.3%25 identity in 96 aa overlap.;gbkey=CDS;gene=ML1557;product=conserved hypothetical protein;protein_id=CAC30508.1;transl_table=11
AL450380.1	EMBL	gene	1883536	1884579	.	-	.	ID=gene-nusA;Name=nusA;gbkey=Gene;gene=nusA;gene_biotype=protein_coding;gene_synonym=ML1558
AL450380.1	EMBL	CDS	1883536	1884579	.	-	0	ID=cds-CAC30509.1;Parent=gene-nusA;Dbxref=GOA:Q9Z5J1,InterPro:IPR003029,InterPro:IPR004087,InterPro:IPR004088,InterPro:IPR009019,InterPro:IPR010213,InterPro:IPR012340,InterPro:IPR013735,InterPro:IPR015946,InterPro:IPR022967,InterPro:IPR025249,InterPro:IPR028620,NCBI_GP:CAC30509.1;Name=CAC30509.1;Note=Highly similar to many transcriptional terminators/s including: Escherichia coli N utilization substance protein A SW:NUSA_ECOLI (X00513) (495 aa)%3B Fasta score E(): 2e-30%2C 33.1%25 identity in 363 aa overlap and Mycobacterium tuberculosis. Contains Pfam match to entry PF00013 KH-domain%2C KH domain.;gbkey=CDS;gene=nusA;product=probable transcription termination/antitermination factor;protein_id=CAC30509.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1883599	1883709	.	-	.	ID=id-nusA;Note=Pfam match to entry PF00013 KH-domain%2C KH domain%2C score 19.40%2C E-value 0.0002;gbkey=misc_feature;gene=nusA
AL450380.1	EMBL	pseudogene	1884582	1885111	.	-	.	ID=gene-ML1559;Name=ML1559;gbkey=Gene;gene=ML1559;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1884582	1885111	.	-	0	ID=cds-ML1559;Parent=gene-ML1559;Note=Possible pseudogene of M. tuberculosis orthologue Rv2842c (Best blastx score 293);gbkey=CDS;gene=ML1559;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1885239	1885775	.	+	.	ID=gene-ML1560;Name=ML1560;gbkey=Gene;gene=ML1560;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1885239	1885775	.	+	0	ID=cds-CAC30511.1;Parent=gene-ML1560;Dbxref=UniProtKB/TrEMBL:Q7AQ42,NCBI_GP:CAC30511.1;Name=CAC30511.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein Rv2843 TR:O05816 (EMBL:Z95207) (181 aa)%3B Fasta score E(): 2e-31%2C 70.2%25 identity in 168 aa overlap.;gbkey=CDS;gene=ML1560;product=conserved hypothetical protein;protein_id=CAC30511.1;transl_table=11
AL450380.1	EMBL	gene	1885772	1886269	.	+	.	ID=gene-ML1561;Name=ML1561;gbkey=Gene;gene=ML1561;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1885772	1886269	.	+	0	ID=cds-CAC30512.1;Parent=gene-ML1561;Dbxref=InterPro:IPR009078,InterPro:IPR012347,InterPro:IPR029447,UniProtKB/TrEMBL:Q7AQ41,NCBI_GP:CAC30512.1;Name=CAC30512.1;Note=Highly similar to proteins of unknown function from Streptomyces coelicolor TR:CAB91137 (EMBL:AL355913) (167 aa)%3B Fasta score E(): 1.4e-07%2C 35.8%25 identity in 137 aa overlap and Mycobacterium tuberculosis RV2844 SW:O05815.;gbkey=CDS;gene=ML1561;product=conserved hypothetical protein;protein_id=CAC30512.1;transl_table=11
AL450380.1	EMBL	gene	1886294	1887898	.	-	.	ID=gene-ML1562;Name=ML1562;gbkey=Gene;gene=ML1562;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1886294	1887898	.	-	0	ID=cds-CAC30513.1;Parent=gene-ML1562;Dbxref=GOA:Q7AQ40,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7AQ40,NCBI_GP:CAC30513.1;Name=CAC30513.1;Note=Highly similar to several transmembrane transport proteins including: Streptomyces lipmanii SW:PUR8_STRLP (P42670) (503 aa)%3B Fasta score E(): 0%2C 33.3%25 identity in 481 aa overlap and Mycobacterium tuberculosis TR:O05813 (EMBL:Z95207) (530 aa)%3B Fasta score E(): 0%2C 86.5%25 identity in 535 aa overlap. Contains multiple possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporter.;gbkey=CDS;gene=ML1562;product=putative transmembrane efflux protein;protein_id=CAC30513.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1886318	1887733	.	-	.	ID=id-ML1562;Note=Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporter%2C score -94.20%2C E-value 0.0017;gbkey=misc_feature;gene=ML1562
AL450380.1	EMBL	pseudogene	1887924	1889130	.	-	.	ID=gene-cysG2;Name=cysG2;gbkey=Gene;gene=cysG2;gene_biotype=pseudogene;gene_synonym=ML1563;pseudo=true
AL450380.1	EMBL	CDS	1887924	1889130	.	-	0	ID=cds-cysG2;Parent=gene-cysG2;Note=Possible pseudogene of M. tuberculosis orthologue cysG2 (Best blastx score 286);gbkey=CDS;gene=cysG2;product=multifunctional enzyme%2C siroheme synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1889188	1890515	.	-	.	ID=gene-cobB;Name=cobB;gbkey=Gene;gene=cobB;gene_biotype=pseudogene;gene_synonym=ML1564;pseudo=true
AL450380.1	EMBL	CDS	1889188	1890515	.	-	0	ID=cds-cobB;Parent=gene-cobB;Note=Possible pseudogene of M. tuberculosis orthologue cobB (Best blastx score 390);gbkey=CDS;gene=cobB;product=cobyrinic acid a%2Cc-diamide synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1890864	1891095	.	-	.	ID=gene-cobA;Name=cobA;gbkey=Gene;gene=cobA;gene_biotype=pseudogene;gene_synonym=ML1565;pseudo=true
AL450380.1	EMBL	CDS	1890864	1891095	.	-	0	ID=cds-cobA;Parent=gene-cobA;Note=Possible pseudogene of M. tuberculosis orthologue cobA (Best blastx score 168);gbkey=CDS;gene=cobA;product=cob(I)alamin adenosyltransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1891163	1892058	.	-	.	ID=gene-ML1566;Name=ML1566;gbkey=Gene;gene=ML1566;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1891163	1892058	.	-	0	ID=cds-ML1566;Parent=gene-ML1566;Note=Possible pseudogene of M. tuberculosis orthologue Rv2850c (Best blastx score 295);gbkey=CDS;gene=ML1566;product=possible magnesium-chelatase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1892063	1892375	.	-	.	ID=gene-ML1567;Name=ML1567;gbkey=Gene;gene=ML1567;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1892063	1892375	.	-	0	ID=cds-ML1567;Parent=gene-ML1567;Note=Possible pseudogene of M. tuberculosis orthologue Rv2851c (Best blastx score 221);gbkey=CDS;gene=ML1567;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1892384	1893857	.	-	.	ID=gene-ML1568;Name=ML1568;gbkey=Gene;gene=ML1568;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1892384	1893857	.	-	0	ID=cds-ML1568;Parent=gene-ML1568;Note=Possible pseudogene of M. tuberculosis orthologue Rv2852c (Best blastx score 535);gbkey=CDS;gene=ML1568;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1894008	1894980	.	+	.	ID=gene-ML1569;Name=ML1569;gbkey=Gene;gene=ML1569;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1894008	1894980	.	+	0	ID=cds-ML1569;Parent=gene-ML1569;Note=Possible pseudogene of M. tuberculosis orthologue Rv2854 (Best blastx score 330);gbkey=CDS;gene=ML1569;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1895081	1896437	.	+	.	ID=gene-gorA;Name=gorA;gbkey=Gene;gene=gorA;gene_biotype=pseudogene;gene_synonym=ML1570;pseudo=true
AL450380.1	EMBL	CDS	1895081	1896437	.	+	0	ID=cds-gorA;Parent=gene-gorA;Note=Possible pseudogene of M. tuberculosis orthologue gorA (Best blastx score 595);gbkey=CDS;gene=gorA;product=glutathione reductase homologue (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1896807	1897739	.	+	.	ID=gene-nicT;Name=nicT;gbkey=Gene;gene=nicT;gene_biotype=pseudogene;gene_synonym=ML1571;pseudo=true
AL450380.1	EMBL	CDS	1896807	1897739	.	+	0	ID=cds-nicT;Parent=gene-nicT;Note=Possible pseudogene of M. tuberculosis orthologue nicT (Best blastx score 614);gbkey=CDS;gene=nicT;product=probable nickel transport protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1898124	1898522	.	+	.	ID=gene-ML1572;Name=ML1572;gbkey=Gene;gene=ML1572;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1898124	1898522	.	+	0	ID=cds-CAC30523.1;Parent=gene-ML1572;Dbxref=GOA:Q9CBV0,InterPro:IPR002591,InterPro:IPR017849,InterPro:IPR017850,UniProtKB/TrEMBL:Q9CBV0,NCBI_GP:CAC30523.1;Name=CAC30523.1;Note=function unknown.;gbkey=CDS;gene=ML1572;product=hypothetical protein;protein_id=CAC30523.1;transl_table=11
AL450380.1	EMBL	gene	1898983	1899732	.	-	.	ID=gene-ML1573;Name=ML1573;gbkey=Gene;gene=ML1573;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1898983	1899732	.	-	0	ID=cds-CAC30524.1;Parent=gene-ML1573;Dbxref=GOA:Q9CBU9,InterPro:IPR011697,InterPro:IPR017926,InterPro:IPR029062,UniProtKB/TrEMBL:Q9CBU9,NCBI_GP:CAC30524.1;Name=CAC30524.1;Note=Similar to several proteins of undefined function e.g. Mycobacterium tuberculosis RV2859C TR:O33341. Also similar in regions to Dictyostelium discoideum GMP synthase (EC 6.3.5.2) (glutamine amidotransferase) SW:GUAA_DICDI (P32073) (718 aa)%3B Fasta score E(): 0.0045%2C 26.7%25 identity in 176 aa overlap. Contains Pfam match to entry PF00117 GATase%2C Glutamine amidotransferase class-I.;gbkey=CDS;gene=ML1573;product=possible amidotransferase;protein_id=CAC30524.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1899025	1899642	.	-	.	ID=id-ML1573;Note=Pfam match to entry PF00117 GATase%2C Glutamine amidotransferase class-I%2C score 14.20%2C E-value 2.1e-07;gbkey=misc_feature;gene=ML1573
AL450380.1	EMBL	pseudogene	1899797	1900054	.	-	.	ID=gene-glnA4;Name=glnA4;gbkey=Gene;gene=glnA4;gene_biotype=pseudogene;gene_synonym=ML1574;pseudo=true
AL450380.1	EMBL	CDS	1899797	1900054	.	-	0	ID=cds-glnA4;Parent=gene-glnA4;Note=Possible pseudogene of M. tuberculosis orthologue glnA4 (Best blastx score 129);gbkey=CDS;gene=glnA4;product=proable glutamine synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1900169	1900462	.	-	.	ID=gene-ML1575;Name=ML1575;gbkey=Gene;gene=ML1575;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1900169	1900462	.	-	0	ID=cds-CAC30526.1;Parent=gene-ML1575;Dbxref=UniProtKB/TrEMBL:Q9CBU8,NCBI_GP:CAC30526.1;Name=CAC30526.1;Note=function unknown.;gbkey=CDS;gene=ML1575;product=hypothetical protein;protein_id=CAC30526.1;transl_table=11
AL450380.1	EMBL	gene	1900886	1901743	.	-	.	ID=gene-mapB;Name=mapB;gbkey=Gene;gene=mapB;gene_biotype=protein_coding;gene_synonym=ML1576
AL450380.1	EMBL	CDS	1900886	1901743	.	-	0	ID=cds-CAC30527.1;Parent=gene-mapB;Dbxref=GOA:Q9CBU7,InterPro:IPR000994,InterPro:IPR001714,InterPro:IPR002467,UniProtKB/TrEMBL:Q9CBU7,NCBI_GP:CAC30527.1;Name=CAC30527.1;Note=Highly similar to many methionine aminopeptidases (EC 3.4.11.18) responsible for removing the amino-terminal methionine from many nascent proteins e.g. Escherichia coli SW:AMPM_ECOLI (P07906) (264 aa)%3B Fasta score E(): 0%2C 51.4%25 identity in 247 aa overlap and Mycobacterium tuberculosis SW:AMPM_MYCTU (O33343) (285 aa)%3B Fasta score E(): 0%2C 89.8%25 identity in 283 aa overlap. Contains Pfam match to entry PF00557 Peptidase_M24%2C metallopeptidase family M24. Contains PS00680 Methionine aminopeptidase subfamily 1 signature.;gbkey=CDS;gene=mapB;product=methionine aminopeptidase;protein_id=CAC30527.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1900904	1901626	.	-	.	ID=id-mapB;Note=Pfam match to entry PF00557 Peptidase_M24%2C metallopeptidase family M24%2C score 257.80%2C E-value 1.4e-73;gbkey=misc_feature;gene=mapB
AL450380.1	EMBL	sequence_feature	1901084	1901140	.	-	.	ID=id-mapB-2;Note=PS00680 Methionine aminopeptidase subfamily 1 signature;gbkey=misc_feature;gene=mapB
AL450380.1	EMBL	gene	1901935	1903761	.	-	.	ID=gene-ML1577;Name=ML1577;gbkey=Gene;gene=ML1577;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1901935	1903761	.	-	0	ID=cds-CAC30528.1;Parent=gene-ML1577;Dbxref=GOA:Q9CBU6,InterPro:IPR001460,InterPro:IPR007887,InterPro:IPR012338,UniProtKB/TrEMBL:Q9CBU6,NCBI_GP:CAC30528.1;Name=CAC30528.1;Note=Similar to many penecillin binding proteins e.g. Streptomyces clavuligerus high molecular weight group B penicillin binding protein TR:P72405 (EMBL:U56256) (551 aa)%3B Fasta score E(): 6.3e-27%2C 29.9%25 identity in 609 aa overlap and Mycobacterium tuberculosis RV2864C SW:O33346. Contains a possible N-terminal signal sequence and an appropriately positioned Prokaryotic membrane lipoprotein lipid attachment site. Contains Pfam match to entry PF00905 Transpeptidase%2C Penicillin binding protein transpeptidase domain. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=ML1577;product=probable penicillin binding protein;protein_id=CAC30528.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1901962	1902828	.	-	.	ID=id-ML1577;Note=Pfam match to entry PF00905 Transpeptidase%2C Penicillin binding protein transpeptidase domain%2C score 281.80%2C E-value 8.5e-81;gbkey=misc_feature;gene=ML1577
AL450380.1	EMBL	sequence_feature	1902259	1902282	.	-	.	ID=id-ML1577-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1577
AL450380.1	EMBL	sequence_feature	1903675	1903707	.	-	.	ID=id-ML1577-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=ML1577
AL450380.1	EMBL	pseudogene	1903979	1904158	.	+	.	ID=gene-ML1578;Name=ML1578;gbkey=Gene;gene=ML1578;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1903979	1904158	.	+	0	ID=cds-ML1578;Parent=gene-ML1578;Note=Possible pseudogene of M. tuberculosis orthologue Rv2865%3B~Possible pseudogene of M. tuberculosis orthologue Rv1247c (Best blastx score 104);gbkey=CDS;gene=ML1578;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1904189	1904448	.	+	.	ID=gene-ML1579;Name=ML1579;gbkey=Gene;gene=ML1579;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1904189	1904448	.	+	0	ID=cds-ML1579;Parent=gene-ML1579;Note=Possible pseudogene of M. tuberculosis orthologue Rv2866 (Best blastx score 208);gbkey=CDS;gene=ML1579;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1904948	1905678	.	-	.	ID=gene-ML1580;Name=ML1580;gbkey=Gene;gene=ML1580;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1904948	1905678	.	-	0	ID=cds-ML1580;Parent=gene-ML1580;Note=Possible pseudogene of M. tuberculosis orthologue Rv2867c (Best blastx score 382);gbkey=CDS;gene=ML1580;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1905761	1906939	.	-	.	ID=gene-gcpE;Name=gcpE;gbkey=Gene;gene=gcpE;gene_biotype=protein_coding;gene_synonym=ML1581
AL450380.1	EMBL	CDS	1905761	1906939	.	-	0	ID=cds-CAC30532.1;Parent=gene-gcpE;Dbxref=GOA:Q9CBU5,InterPro:IPR004588,InterPro:IPR011005,InterPro:IPR013785,InterPro:IPR016425,NCBI_GP:CAC30532.1;Name=CAC30532.1;Note=Highly similar to many GcpE orthologues the function of which is unknown. However in E. coli gcpE has been shown to be an essential gene. Similar to Escherichia coli SW:GCPE_ECOLI (P27433) (372 aa)%3B Fasta score E(): 0%2C 45.5%25 identity in 330 aa overlap and Mycobacterium tuberculosis TR:O33350 (EMBL:AL008883) (387 aa)%3B Fasta score E(): 0%2C 87.6%25 identity in 388 aa overlap.;gbkey=CDS;gene=gcpE;product=conserved hypothetical protein;protein_id=CAC30532.1;transl_table=11
AL450380.1	EMBL	gene	1906992	1908206	.	-	.	ID=gene-ML1582;Name=ML1582;gbkey=Gene;gene=ML1582;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1906992	1908206	.	-	0	ID=cds-CAC30533.1;Parent=gene-ML1582;Dbxref=GOA:Q9CBU4,InterPro:IPR001478,InterPro:IPR008915,NCBI_GP:CAC30533.1;Name=CAC30533.1;Note=Similar to many including several putative metalloproteases e.g. Treponema pallidum TR:O83609 (EMBL:AE001235) (450 aa)%3B Fasta score E(): 1.6e-10%2C 27.5%25 identity in 265 aa overlap and several proteins of undefined function e.g. Mycobacterium tuberculosis RV2869C TR:O33351 (EMBL:AL008883) (404 aa)%3B Fasta score E(): 0%2C 82.2%25 identity in 404 aa overlap. Contains possible membrane spanning hydrophobic domains and a possible N-terminal signal sequence. Contains Pfam match to entry PF00595 PDZ%2C PDZ domain (Also known as DHR or GLGF)..;gbkey=CDS;gene=ML1582;product=probable integral membrane protein;protein_id=CAC30533.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1907601	1907831	.	-	.	ID=id-ML1582;Note=Pfam match to entry PF00595 PDZ%2C PDZ domain (Also known as DHR or GLGF).%2C score 12.90%2C E-value 0.064;gbkey=misc_feature;gene=ML1582
AL450380.1	EMBL	gene	1908215	1909435	.	-	.	ID=gene-ML1583;Name=ML1583;gbkey=Gene;gene=ML1583;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1908215	1909435	.	-	0	ID=cds-CAC30534.1;Parent=gene-ML1583;Dbxref=GOA:Q9CBU3,InterPro:IPR003821,InterPro:IPR013512,InterPro:IPR013644,InterPro:IPR016040,InterPro:IPR026877,NCBI_GP:CAC30534.1;Name=CAC30534.1;Note=Highly similar to many 1-deoxy-D-xylulose 5-phosphate reductoisomerases involved in terpenoid biosynthesis e.g. Escherichia coli SW:DXR_ECOLI (P45568) (195 aa)%3B BlastP Expect 9.4 and Mycobacterium tuberculosis RV2870C SW:DXR_MYCTU (Q10798) (413 aa)%3B Fasta score E(): 0%2C 84.3%25 identity in 395 aa overlap.;gbkey=CDS;gene=ML1583;product=possible 1-deoxy-D-xylulose 5-phosphate reductoisomerase;protein_id=CAC30534.1;transl_table=11
AL450380.1	EMBL	gene	1909590	1909844	.	+	.	ID=gene-ML1584;Name=ML1584;gbkey=Gene;gene=ML1584;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1909590	1909844	.	+	0	ID=cds-CAC30535.1;Parent=gene-ML1584;Dbxref=GOA:Q9CBU2,InterPro:IPR024341,NCBI_GP:CAC30535.1;Name=CAC30535.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein RV2876 SW:YS76_MYCTU (Q10802) (104 aa)%3B Fasta score E(): 3.3e-26%2C 75.0%25 identity in 88 aa overlap. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1584;product=possible conserved membrane protein;protein_id=CAC30535.1;transl_table=11
AL450380.1	EMBL	pseudogene	1911375	1912175	.	-	.	ID=gene-ML1585;Name=ML1585;gbkey=Gene;gene=ML1585;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1911375	1912175	.	-	0	ID=cds-ML1585;Parent=gene-ML1585;Note=Possible pseudogene of M. tuberculosis orthologue Rv2877c (Best blastx score 174);gbkey=CDS;gene=ML1585;product=possible mercury resistance transport system (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1912183	1912670	.	-	.	ID=gene-mpt53;Name=mpt53;gbkey=Gene;gene=mpt53;gene_biotype=pseudogene;gene_synonym=ML1586;pseudo=true
AL450380.1	EMBL	CDS	1912183	1912670	.	-	0	ID=cds-mpt53;Parent=gene-mpt53;Note=Possible pseudogene of M. tuberculosis orthologue mpt53 (Best blastx score 213);gbkey=CDS;gene=mpt53;product=secreted protein Mpt53 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1912793	1913342	.	-	.	ID=gene-ML1587;Name=ML1587;gbkey=Gene;gene=ML1587;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1912793	1913342	.	-	0	ID=cds-ML1587;Parent=gene-ML1587;Note=Possible pseudogene of M. tuberculosis orthologue Rv2879c (Best blastx score 272);gbkey=CDS;gene=ML1587;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1913057	1913874	.	-	.	ID=gene-ML1588;Name=ML1588;gbkey=Gene;gene=ML1588;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1913057	1913874	.	-	0	ID=cds-ML1588;Parent=gene-ML1588;Note=Possible pseudogene of M. tuberculosis orthologue Rv2880c (Best blastx score 295);gbkey=CDS;gene=ML1588;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1913897	1914835	.	-	.	ID=gene-ML1589;Name=ML1589;gbkey=Gene;gene=ML1589;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1913897	1914835	.	-	0	ID=cds-CAC30540.1;Parent=gene-ML1589;Dbxref=GOA:Q9CBU1,InterPro:IPR000374,NCBI_GP:CAC30540.1;Name=CAC30540.1;Note=The C-terminus of this protein is highly similar to many proteins involved with phospholipid biosynthesis e.g. Escherichia coli phosphatidate cytidylyltransferase (EC 2.7.7.41) SW:CDSA_ECOLI (P06466) (249 aa)%3B Fasta score E(): 6.6e-15%2C 40.6%25 identity in 160 aa overlap and Mycobacterium tuberculosis Rv2881c SW:CDSA_MYCTU (Q10807) (306 aa)%3B Fasta score E(): 0%2C 70.3%25 identity in 313 aa overlap. Contains multiple possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF01148 Cytidylyltrans%2C Phosphatidate cytidylyltransferase. Contains PS01315 Phosphatidate cytidylyltransferase signature. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML1589;product=possible phosphatidate cytidylyltransferase;protein_id=CAC30540.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1913900	1914775	.	-	.	ID=id-ML1589;Note=Pfam match to entry PF01148 Cytidylyltrans%2C Phosphatidate cytidylyltransferase%2C score 258.90%2C E-value 6.7e-74;gbkey=misc_feature;gene=ML1589
AL450380.1	EMBL	sequence_feature	1913951	1914031	.	-	.	ID=id-ML1589-2;Note=PS01315 Phosphatidate cytidylyltransferase signature;gbkey=misc_feature;gene=ML1589
AL450380.1	EMBL	sequence_feature	1914098	1914121	.	-	.	ID=id-ML1589-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1589
AL450380.1	EMBL	gene	1914867	1915424	.	-	.	ID=gene-frr;Name=frr;gbkey=Gene;gene=frr;gene_biotype=protein_coding;gene_synonym=ML1590
AL450380.1	EMBL	CDS	1914867	1915424	.	-	0	ID=cds-CAC30541.1;Parent=gene-frr;Dbxref=GOA:O33046,InterPro:IPR002661,InterPro:IPR023584,NCBI_GP:CAC30541.1;Name=CAC30541.1;Note=Highly similar to many ribosome releasing factors%2C involved in the release of ribosomes from messenger RNA at the termination of translation%2C e.g. Escherichia coli SW:RRF_ECOLI (P16174) (430 aa)%3B BlastP Expect 9.8 and Mycobacterium tuberculosis Rv2882c SW:RRF_MYCTU (Q10794) (185 aa)%3B Fasta score E(): 0%2C 90.8%25 identity in 185 aa overlap. Contains Pfam match to entry PF01765 RRF%2C Ribosome recycling factor.;gbkey=CDS;gene=frr;product=ribosome recycling factor;protein_id=CAC30541.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1914876	1915370	.	-	.	ID=id-frr;Note=Pfam match to entry PF01765 RRF%2C Ribosome recycling factor%2C score 338.10%2C E-value 1e-97;gbkey=misc_feature;gene=frr
AL450380.1	EMBL	gene	1915483	1916322	.	-	.	ID=gene-ML1591;Name=ML1591;gbkey=Gene;gene=ML1591;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1915483	1916322	.	-	0	ID=cds-CAC30542.1;Parent=gene-ML1591;Dbxref=GOA:O33045,InterPro:IPR001048,InterPro:IPR011817,InterPro:IPR015963,NCBI_GP:CAC30542.1;Name=CAC30542.1;Note=Highly similar to many uridylate kinases including: Escherichia coli SW:PYRH_ECOLI (P29464) (240 aa)%3B Fasta score E(): 0%2C 46.1%25 identity in 232 aa overlap and Mycobacterium tuberculosis Rv2883c SW:PYRH_MYCTU (Q10791) (261 aa)%3B Fasta score E(): 0%2C 85.0%25 identity in 274 aa overlap. Contains Pfam match to entry PF00696 aakinase%2C Amino acid kinase family.;gbkey=CDS;gene=ML1591;product=possible uridylate kinase;protein_id=CAC30542.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1915630	1916178	.	-	.	ID=id-ML1591;Note=Pfam match to entry PF00696 aakinase%2C Amino acid kinase family%2C score 167.40%2C E-value 2.4e-46;gbkey=misc_feature;gene=ML1591
AL450380.1	EMBL	ribosome_entry_site	1916327	1916332	.	-	.	ID=id-AL450380.1:1916327..1916332;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	1917188	1917864	.	+	.	ID=gene-ML1592;Name=ML1592;gbkey=Gene;gene=ML1592;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1917188	1917864	.	+	0	ID=cds-ML1592;Parent=gene-ML1592;Note=Possible pseudogene of M. tuberculosis orthologue Rv2884 (Best blastx score 260);gbkey=CDS;gene=ML1592;product=two-component response regulator (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1918052	1918499	.	-	.	ID=gene-ML1593;Name=ML1593;gbkey=Gene;gene=ML1593;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1918052	1918499	.	-	0	ID=cds-ML1593;Parent=gene-ML1593;Note=Possible pseudogene of M. tuberculosis orthologue Rv1926c (Best blastx score 67);gbkey=CDS;gene=ML1593;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1919054	1920356	.	-	.	ID=gene-ML1594;Name=ML1594;gbkey=Gene;gene=ML1594;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1919054	1920356	.	-	0	ID=cds-ML1594;Parent=gene-ML1594;Note=Possible pseudogene of M. tuberculosis orthologue Rv0783c (Best blastx score 335);gbkey=CDS;gene=ML1594;product=multidrug resistance protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	stem_loop	1920439	1920495	.	-	.	ID=id-AL450380.1:1920439..1920495;Note=57 bp palindrome;gbkey=stem_loop
AL450380.1	EMBL	pseudogene	1920491	1920906	.	+	.	ID=gene-ML1595;Name=ML1595;gbkey=Gene;gene=ML1595;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1920491	1920906	.	+	0	ID=cds-ML1595;Parent=gene-ML1595;Note=Possible pseudogene of M. tuberculosis orthologue Rv2887;gbkey=CDS;gene=ML1595;product=possible regulatory protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1920913	1922319	.	-	.	ID=gene-ML1596;Name=ML1596;gbkey=Gene;gene=ML1596;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1920913	1922319	.	-	0	ID=cds-CAC30547.1;Parent=gene-ML1596;Dbxref=GOA:O33040,InterPro:IPR000120,InterPro:IPR020556,InterPro:IPR023631,NCBI_GP:CAC30547.1;Name=CAC30547.1;Note=Highly similar to several proposed amidases including: Pseudomonas putida SW:AMID_PSEPU (O69768) (466 aa)%3B Fasta score E(): 2.9e-19%2C 29.0%25 identity in 469 aa overlap and Mycobacterium tuberculosis Rv2888c SW:AMI3_MYCTU (Q10811) (473 aa)%3B Fasta score E(): 0%2C 76.7%25 identity in 468 aa overlap. Contains Pfam match to entry PF01425 Amidase%2C Amidase. Contains PS00571 Amidases signature. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML1596;product=possible amidase;protein_id=CAC30547.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1920973	1922223	.	-	.	ID=id-ML1596;Note=Pfam match to entry PF01425 Amidase%2C Amidase%2C score 467.70%2C E-value 9.3e-137;gbkey=misc_feature;gene=ML1596
AL450380.1	EMBL	sequence_feature	1921768	1921863	.	-	.	ID=id-ML1596-2;Note=PS00571 Amidases signature;gbkey=misc_feature;gene=ML1596
AL450380.1	EMBL	sequence_feature	1921951	1921974	.	-	.	ID=id-ML1596-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1596
AL450380.1	EMBL	gene	1922355	1923185	.	-	.	ID=gene-tsf;Name=tsf;gbkey=Gene;gene=tsf;gene_biotype=protein_coding;gene_synonym=ML1597
AL450380.1	EMBL	CDS	1922355	1923185	.	-	0	ID=cds-CAC30548.1;Parent=gene-tsf;Dbxref=GOA:O33039,InterPro:IPR000449,InterPro:IPR001816,InterPro:IPR009060,InterPro:IPR014039,InterPro:IPR018101,NCBI_GP:CAC30548.1;Name=CAC30548.1;Note=Highly similar to many elongation factors incuding: Streptomyces coelicolor SW:EFTS_STRCO (O31213) (278 aa)%3B Fasta score E(): 0%2C 52.5%25 identity in 282 aa overlap and Mycobacterium tuberculosis RV2889C SW:EFTS_MYCTU (Q10788) (271 aa)%3B Fasta score E(): 0%2C 83.7%25 identity in 276 aa overlap. Contains Pfam match to entry PF02094 TS-N%2C TS-N domain. Contains Pfam match to entry PF00889 EF_TS%2C Elongation factor TS. Contains PS01127 Elongation factor Ts signature 2. Contains PS01126 Elongation factor Ts signature 1.;gbkey=CDS;gene=tsf;product=elongation factor EF-Ts;protein_id=CAC30548.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1922361	1923017	.	-	.	ID=id-tsf;Note=Pfam match to entry PF00889 EF_TS%2C Elongation factor TS%2C score 311.80%2C E-value 8e-90;gbkey=misc_feature;gene=tsf
AL450380.1	EMBL	sequence_feature	1922943	1922975	.	-	.	ID=id-tsf-2;Note=PS01127 Elongation factor Ts signature 2;gbkey=misc_feature;gene=tsf
AL450380.1	EMBL	sequence_feature	1923060	1923179	.	-	.	ID=id-tsf-3;Note=Pfam match to entry PF02094 TS-N%2C TS-N domain%2C score 62.60%2C E-value 8.4e-15;gbkey=misc_feature;gene=tsf
AL450380.1	EMBL	sequence_feature	1923105	1923152	.	-	.	ID=id-tsf-4;Note=PS01126 Elongation factor Ts signature 1;gbkey=misc_feature;gene=tsf
AL450380.1	EMBL	gene	1923187	1924020	.	-	.	ID=gene-rpsB;Name=rpsB;gbkey=Gene;gene=rpsB;gene_biotype=protein_coding;gene_synonym=ML1598
AL450380.1	EMBL	CDS	1923187	1924020	.	-	0	ID=cds-CAC30549.1;Parent=gene-rpsB;Dbxref=GOA:O33038,InterPro:IPR001865,InterPro:IPR005706,InterPro:IPR018130,InterPro:IPR023591,NCBI_GP:CAC30549.1;Name=CAC30549.1;Note=Highly similar to many 30s ribosomal proteins (S2) including: Bacillus subtilis SW:RS2_BACSU (P21464) (245 aa)%3B Fasta score E(): 0%2C 57.6%25 identity in 250 aa overlap and Mycobacterium tuberculosis RV2890C SW:RS2_MYCTU (Q10796) (287 aa)%3B Fasta score E(): 0%2C 91.5%25 identity in 270 aa overlap. Contains Pfam match to entry PF00318 Ribosomal_S2%2C Ribosomal protein S2. Contains PS00962 Ribosomal protein S2 signature 1.;gbkey=CDS;gene=rpsB;product=30S ribosomal protein S2;protein_id=CAC30549.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1923346	1923996	.	-	.	ID=id-rpsB;Note=Pfam match to entry PF00318 Ribosomal_S2%2C Ribosomal protein S2%2C score 326.50%2C E-value 3.1e-94;gbkey=misc_feature;gene=rpsB
AL450380.1	EMBL	sequence_feature	1923970	1924005	.	-	.	ID=id-rpsB-2;Note=PS00962 Ribosomal protein S2 signature 1;gbkey=misc_feature;gene=rpsB
AL450380.1	EMBL	pseudogene	1924403	1924744	.	+	.	ID=gene-ML1599;Name=ML1599;gbkey=Gene;gene=ML1599;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1924403	1924744	.	+	0	ID=cds-ML1599;Parent=gene-ML1599;Note=Possible pseudogene of M. tuberculosis orthologue Rv2891 (Best blastx score 96);gbkey=CDS;gene=ML1599;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1924844	1925737	.	-	.	ID=gene-xerC;Name=xerC;gbkey=Gene;gene=xerC;gene_biotype=protein_coding;gene_synonym=ML1600
AL450380.1	EMBL	CDS	1924844	1925737	.	-	0	ID=cds-CAC30551.1;Parent=gene-xerC;Dbxref=GOA:Q9CBU0,InterPro:IPR002104,InterPro:IPR004107,InterPro:IPR011010,InterPro:IPR013762,InterPro:IPR023009,InterPro:IPR023109,NCBI_GP:CAC30551.1;Name=CAC30551.1;Note=Highly similar to many integrase/recombinases including: Escherichia coli XerD%2C involved in site-specific recombination of plasmid ColE1 and chromosome partitioning%2C SW:XERD_ECOLI (P21891) (298 aa)%3B Fasta score E(): 0%2C 41.5%25 identity in 301 aa overlap and Mycobacterium tuberculosis RV2894C SW:YS94_MYCTU (Q10815) (298 aa)%3B Fasta score E(): 0%2C 85.1%25 identity in 296 aa overlap. Contains Pfam match to entry PF00589 Phage_integrase%2C 'Phage' integrase family.%3B~Similar to ML1365;gbkey=CDS;gene=xerC;product=integrase/recombinase;protein_id=CAC30551.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1924874	1925431	.	-	.	ID=id-xerC;Note=Pfam match to entry PF00589 Phage_integrase%2C 'Phage' integrase family%2C score 198.20%2C E-value 1.3e-55;gbkey=misc_feature;gene=xerC
AL450380.1	EMBL	gene	1926754	1927119	.	-	.	ID=gene-ML1601;Name=ML1601;gbkey=Gene;gene=ML1601;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1926754	1927119	.	-	0	ID=cds-CAC30552.1;Parent=gene-ML1601;Dbxref=UniProtKB/TrEMBL:Q7AQ39,NCBI_GP:CAC30552.1;Name=CAC30552.1;Note=function unknown.;gbkey=CDS;gene=ML1601;product=hypothetical protein;protein_id=CAC30552.1;transl_table=11
AL450380.1	EMBL	gene	1927803	1928123	.	-	.	ID=gene-ML1602;Name=ML1602;gbkey=Gene;gene=ML1602;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1927803	1928123	.	-	0	ID=cds-CAC30553.1;Parent=gene-ML1602;Dbxref=UniProtKB/TrEMBL:Q9CBT9,NCBI_GP:CAC30553.1;Name=CAC30553.1;Note=function unknown.;gbkey=CDS;gene=ML1602;product=hypothetical protein;protein_id=CAC30553.1;transl_table=11
AL450380.1	EMBL	gene	1928376	1928636	.	-	.	ID=gene-ML1603;Name=ML1603;gbkey=Gene;gene=ML1603;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1928376	1928636	.	-	0	ID=cds-CAC30554.1;Parent=gene-ML1603;Dbxref=UniProtKB/TrEMBL:Q9CBT8,NCBI_GP:CAC30554.1;Name=CAC30554.1;Note=function unknown.;gbkey=CDS;gene=ML1603;product=hypothetical protein;protein_id=CAC30554.1;transl_table=11
AL450380.1	EMBL	gene	1928846	1929235	.	-	.	ID=gene-ML1604;Name=ML1604;gbkey=Gene;gene=ML1604;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1928846	1929235	.	-	0	ID=cds-CAC30555.1;Parent=gene-ML1604;Dbxref=UniProtKB/TrEMBL:Q9CBT7,NCBI_GP:CAC30555.1;Name=CAC30555.1;Note=function unknown.;gbkey=CDS;gene=ML1604;product=hypothetical protein;protein_id=CAC30555.1;transl_table=11
AL450380.1	EMBL	gene	1931206	1931406	.	+	.	ID=gene-ML1605;Name=ML1605;gbkey=Gene;gene=ML1605;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1931206	1931406	.	+	0	ID=cds-CAC30556.1;Parent=gene-ML1605;Dbxref=UniProtKB/TrEMBL:Q9CBT6,NCBI_GP:CAC30556.1;Name=CAC30556.1;Note=function unknown.;gbkey=CDS;gene=ML1605;product=hypothetical protein;protein_id=CAC30556.1;transl_table=11
AL450380.1	EMBL	pseudogene	1932271	1932594	.	-	.	ID=gene-ML1606;Name=ML1606;gbkey=Gene;gene=ML1606;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1932271	1932594	.	-	0	ID=cds-ML1606;Parent=gene-ML1606;Note=Possible pseudogene of M. tuberculosis orthologue Rv2897c;gbkey=CDS;gene=ML1606;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1932700	1932990	.	-	.	ID=gene-ML1607;Name=ML1607;gbkey=Gene;gene=ML1607;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1932700	1932990	.	-	0	ID=cds-CAC30558.1;Parent=gene-ML1607;Dbxref=GOA:O33024,InterPro:IPR003509,InterPro:IPR011856,NCBI_GP:CAC30558.1;Name=CAC30558.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein RV2898C SW:YS98_MYCTU (Q10819). (128 aa)%3B Fasta score E(): 7.9e-19%2C 58.3%25 identity in 96 aa overlap. Contains Pfam match to entry PF02021 UPF0102%2C Uncharacterised protein family UPF0102.;gbkey=CDS;gene=ML1607;product=conserved hypothetical protein;protein_id=CAC30558.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1932703	1932948	.	-	.	ID=id-ML1607;Note=Pfam match to entry PF02021 UPF0102%2C Uncharacterised protein family UPF0102%2C score 130.60%2C E-value 2.9e-35;gbkey=misc_feature;gene=ML1607
AL450380.1	EMBL	pseudogene	1933132	1933663	.	-	.	ID=gene-fdhD;Name=fdhD;gbkey=Gene;gene=fdhD;gene_biotype=pseudogene;gene_synonym=ML1608;pseudo=true
AL450380.1	EMBL	CDS	1933132	1933663	.	-	0	ID=cds-fdhD;Parent=gene-fdhD;Note=Possible pseudogene of M. tuberculosis orthologue fdhD (Best blastx score 188);gbkey=CDS;gene=fdhD;product=affects formate dehydrogenase-N (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1933732	1934804	.	-	.	ID=gene-fdhF;Name=fdhF;gbkey=Gene;gene=fdhF;gene_biotype=pseudogene;gene_synonym=ML1609;pseudo=true
AL450380.1	EMBL	CDS	1933732	1934804	.	-	0	ID=cds-fdhF;Parent=gene-fdhF;Note=Possible pseudogene of M. tuberculosis orthologue fdhF (Best blastx score 351);gbkey=CDS;gene=fdhF;product=molybdopterin-containing oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1935020	1935325	.	-	.	ID=gene-ML1610;Name=ML1610;gbkey=Gene;gene=ML1610;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1935020	1935325	.	-	0	ID=cds-CAC30561.1;Parent=gene-ML1610;Dbxref=InterPro:IPR019592,UniProtKB/TrEMBL:Q7AQ38,NCBI_GP:CAC30561.1;Name=CAC30561.1;Note=Similar to several proteins of unknown function from Mycobacterium tuberculosis e.g. SW:YT01_MYCTU (Q10822) (101 aa)%3B Fasta score E(): 0%2C 99.0%25 identity in 101 aa overlap.;gbkey=CDS;gene=ML1610;product=conserved hypothetical protein;protein_id=CAC30561.1;transl_table=11
AL450380.1	EMBL	gene	1935438	1936160	.	-	.	ID=gene-rnhB;Name=rnhB;gbkey=Gene;gene=rnhB;gene_biotype=protein_coding;gene_synonym=ML1611
AL450380.1	EMBL	CDS	1935438	1936160	.	-	0	ID=cds-CAC30562.1;Parent=gene-rnhB;Dbxref=GOA:O33022,InterPro:IPR001352,InterPro:IPR012337,InterPro:IPR022898,InterPro:IPR024567,NCBI_GP:CAC30562.1;Name=CAC30562.1;Note=Highly similar to many ribonucleases including: Brucella melitensis ribonuclease HII (EC 3.1.26.4) and Mycobacterium tuberculosis ribonuclease HII RV2902C SW:RNH2_MYCTU (Q10793) (264 aa)%3B Fasta score E(): 0%2C 76.7%25 identity in 245 aa overlap. Contains Pfam match to entry PF01351 RNase_HII%2C Ribonuclease HII. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=rnhB;product=ribonuclease HII;protein_id=CAC30562.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1935522	1936055	.	-	.	ID=id-rnhB;Note=Pfam match to entry PF01351 RNase_HII%2C Ribonuclease HII%2C score 254.30%2C E-value 1.7e-72;gbkey=misc_feature;gene=rnhB
AL450380.1	EMBL	sequence_feature	1935964	1935987	.	-	.	ID=id-rnhB-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=rnhB
AL450380.1	EMBL	gene	1936163	1937032	.	-	.	ID=gene-ML1612;Name=ML1612;gbkey=Gene;gene=ML1612;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1936163	1937032	.	-	0	ID=cds-CAC30563.1;Parent=gene-ML1612;Dbxref=GOA:O33021,InterPro:IPR000223,InterPro:IPR015927,InterPro:IPR019533,InterPro:IPR019756,InterPro:IPR019758,InterPro:IPR019759,InterPro:IPR028360,NCBI_GP:CAC30563.1;Name=CAC30563.1;Note=Similar in parts to many proposed signal peptidases e.g. Bacillus subtilis SW:LEPT_BACSU (P71013) (193 aa)%3B Fasta score E(): 1.1e-07%2C 31.0%25 identity in 226 aa overlap and Mycobacterium tuberculosis RV2903C SW:LEP_MYCTU (Q1078) (294 aa)%3B Fasta score E(): 0%2C 69.8%25 identity in 301 aa overlap. Contains a possible membrane spanning hydrophobic domain. Contains 2 Pfam matches to entry PF00461 Peptidase_S26%2C Signal peptidase I. Contains PS00501 Signal peptidases I serine active site. Contains PS00761 Signal peptidases I signature 3.;gbkey=CDS;gene=ML1612;product=possible ignal peptidase I;protein_id=CAC30563.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1936295	1936552	.	-	.	ID=id-ML1612;Note=Pfam match to entry PF00461 Peptidase_S26%2C Signal peptidase I%2C score 31.80%2C E-value 9.2e-09;gbkey=misc_feature;gene=ML1612
AL450380.1	EMBL	sequence_feature	1936331	1936372	.	-	.	ID=id-ML1612-2;Note=PS00761 Signal peptidases I signature 3;gbkey=misc_feature;gene=ML1612
AL450380.1	EMBL	sequence_feature	1936664	1936900	.	-	.	ID=id-ML1612-3;Note=Pfam match to entry PF00461 Peptidase_S26%2C Signal peptidase I%2C score 46.40%2C E-value 3e-13;gbkey=misc_feature;gene=ML1612
AL450380.1	EMBL	sequence_feature	1936766	1936789	.	-	.	ID=id-ML1612-4;Note=PS00501 Signal peptidases I serine active site;gbkey=misc_feature;gene=ML1612
AL450380.1	EMBL	gene	1937112	1937453	.	-	.	ID=gene-rplS;Name=rplS;gbkey=Gene;gene=rplS;gene_biotype=protein_coding;gene_synonym=ML1613
AL450380.1	EMBL	CDS	1937112	1937453	.	-	0	ID=cds-CAC30564.1;Parent=gene-rplS;Dbxref=GOA:O33020,InterPro:IPR001857,InterPro:IPR008991,InterPro:IPR018257,NCBI_GP:CAC30564.1;Name=CAC30564.1;Note=Highly similar to many 50s ribosomal proteins (L19) including: Bacillus stearothermophilus SW:RL19_BACST (P30529) (116 aa)%3B Fasta score E(): 5e-31%2C 70.8%25 identity in 106 aa overlap and Mycobacterium tuberculosis RV2904C SW:RL19_MYCTU (Q10792) (113 aa)%3B Fasta score E(): 0%2C 93.8%25 identity in 113 aa overlap. Contains Pfam match to entry PF01245 Ribosomal_L19%2C Ribosomal protein L19. Contains PS01015 Ribosomal protein L19 signature.;gbkey=CDS;gene=rplS;product=50S ribosomal protein L19;protein_id=CAC30564.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1937115	1937420	.	-	.	ID=id-rplS;Note=Pfam match to entry PF01245 Ribosomal_L19%2C Ribosomal protein L19%2C score 217.60%2C E-value 1.9e-61;gbkey=misc_feature;gene=rplS
AL450380.1	EMBL	sequence_feature	1937154	1937201	.	-	.	ID=id-rplS-2;Note=PS01015 Ribosomal protein L19 signature;gbkey=misc_feature;gene=rplS
AL450380.1	EMBL	pseudogene	1937819	1938722	.	+	.	ID=gene-lppW;Name=lppW;gbkey=Gene;gene=lppW;gene_biotype=pseudogene;gene_synonym=ML1614;pseudo=true
AL450380.1	EMBL	CDS	1937819	1938722	.	+	0	ID=cds-lppW;Parent=gene-lppW;Note=Possible pseudogene of M. tuberculosis orthologue lppW (Best blastx score 203);gbkey=CDS;gene=lppW;product=Slight similarity to beta-lactamase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1938739	1939455	.	-	.	ID=gene-trmD;Name=trmD;gbkey=Gene;gene=trmD;gene_biotype=protein_coding;gene_synonym=ML1615
AL450380.1	EMBL	CDS	1938739	1939455	.	-	0	ID=cds-CAC30566.1;Parent=gene-trmD;Dbxref=GOA:O33017,InterPro:IPR002649,InterPro:IPR016009,InterPro:IPR023148,InterPro:IPR029026,InterPro:IPR029028,NCBI_GP:CAC30566.1;Name=CAC30566.1;Note=Highly similar to many tRNA (guanine-N1) methyltransferases (EC 2.1.1.31) including: Escherichia coli SW:TRMD_ECOLI (P07020) (255 aa)%3B Fasta score E(): 5.4e-33%2C 43.5%25 identity in 230 aa overlap and Mycobacterium tuberculosis RV2906C SW:TRMD_MYCTU (Q10797) (230 aa)%3B Fasta score E(): 0%2C 87.7%25 identity in 227 aa overlap. Contains Pfam match to entry PF01746 tRNA_m1G_MT%2C tRNA (Guanine-1)-methyltransferase.;gbkey=CDS;gene=trmD;product=tRNA (guanine-N1)-methyltransferase;protein_id=CAC30566.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1938757	1939395	.	-	.	ID=id-trmD;Note=Pfam match to entry PF01746 tRNA_m1G_MT%2C tRNA (Guanine-1)-methyltransferase%2C score 495.00%2C E-value 5.8e-145;gbkey=misc_feature;gene=trmD
AL450380.1	EMBL	gene	1939452	1939991	.	-	.	ID=gene-rimM;Name=rimM;gbkey=Gene;gene=rimM;gene_biotype=protein_coding;gene_synonym=ML1616
AL450380.1	EMBL	CDS	1939452	1939991	.	-	0	ID=cds-CAC30567.1;Parent=gene-rimM;Dbxref=GOA:O33016,InterPro:IPR002676,InterPro:IPR009000,InterPro:IPR011033,InterPro:IPR011961,InterPro:IPR027275,NCBI_GP:CAC30567.1;Name=CAC30567.1;Note=Highly similar to many 16s rRNA processing proteins including: Escherichia coli SW:RIMM_ECOLI (P21504) (182 aa)%3B Fasta score E(): 2.8e-10%2C 30.6%25 identity in 183 aa overlap and Mycobacterium tuberculosis RV2907C SW:RIMM_MYCTU (Q10824) (176 aa)%3B Fasta score E(): 0%2C 73.1%25 identity in 175 aa overlap. Contains Pfam match to entry PF01782 RimM%2C RimM.;gbkey=CDS;gene=rimM;product=16S rRNA processing protein;protein_id=CAC30567.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1939464	1939961	.	-	.	ID=id-rimM;Note=Pfam match to entry PF01782 RimM%2C RimM%2C score 288.40%2C E-value 9.1e-83;gbkey=misc_feature;gene=rimM
AL450380.1	EMBL	gene	1939996	1940238	.	-	.	ID=gene-ML1617;Name=ML1617;gbkey=Gene;gene=ML1617;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1939996	1940238	.	-	0	ID=cds-CAC30568.1;Parent=gene-ML1617;Dbxref=GOA:O33015,InterPro:IPR004088,InterPro:IPR009019,InterPro:IPR020627,NCBI_GP:CAC30568.1;Name=CAC30568.1;Note=Highly similar to many proteins of undefined function e.g. Mycobacterium tuberculosis Rv2908c SW:YT08_MYCTU (Q10826) (80 aa)%3B Fasta score E(): 6.5e-28%2C 93.8%25 identity in 80 aa overlap. Contains Pfam match to entry PF00013 KH-domain%2C KH domain.;gbkey=CDS;gene=ML1617;product=conserved hypothetical protein;protein_id=CAC30568.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1940047	1940130	.	-	.	ID=id-ML1617;Note=Pfam match to entry PF00013 KH-domain%2C KH domain%2C score 17.60%2C E-value 0.00072;gbkey=misc_feature;gene=ML1617
AL450380.1	EMBL	gene	1940263	1940745	.	-	.	ID=gene-rpsP;Name=rpsP;gbkey=Gene;gene=rpsP;gene_biotype=protein_coding;gene_synonym=ML1618
AL450380.1	EMBL	CDS	1940263	1940745	.	-	0	ID=cds-CAC30569.1;Parent=gene-rpsP;Dbxref=GOA:O33014,InterPro:IPR000307,InterPro:IPR020592,InterPro:IPR023803,NCBI_GP:CAC30569.1;Name=CAC30569.1;Note=Highly similar to many 30s ribosomal proteins (S16) including: Bacillus subtilis SW:RS16_BACSU (P21474) (89 aa)%3B Fasta score E(): 2.1e-10%2C 45.1%25 identity in 82 aa overlap and Mycobacterium tuberculosis SW:RS16_MYCTU (Q10795) (162 aa)%3B Fasta score E(): 0%2C 82.5%25 identity in 160 aa overlap. Contains Pfam match to entry PF00886 Ribosomal_S16%2C Ribosomal protein S16. Contains PS00732 Ribosomal protein S16 signature.;gbkey=CDS;gene=rpsP;product=30S ribosomal protein S16;protein_id=CAC30569.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1940545	1940721	.	-	.	ID=id-rpsP;Note=Pfam match to entry PF00886 Ribosomal_S16%2C Ribosomal protein S16%2C score 123.10%2C E-value 5e-33;gbkey=misc_feature;gene=rpsP
AL450380.1	EMBL	sequence_feature	1940710	1940739	.	-	.	ID=id-rpsP-2;Note=PS00732 Ribosomal protein S16 signature;gbkey=misc_feature;gene=rpsP
AL450380.1	EMBL	pseudogene	1940962	1941385	.	-	.	ID=gene-ML1619;Name=ML1619;gbkey=Gene;gene=ML1619;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1940962	1941385	.	-	0	ID=cds-ML1619;Parent=gene-ML1619;Note=Possible pseudogene of M. tuberculosis orthologue Rv2910c (Best blastx score 158);gbkey=CDS;gene=ML1619;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1941432	1942668	.	-	.	ID=gene-pknI;Name=pknI;gbkey=Gene;gene=pknI;gene_biotype=pseudogene;gene_synonym=ML1620;pseudo=true
AL450380.1	EMBL	CDS	1941432	1942668	.	-	0	ID=cds-pknI;Parent=gene-pknI;Note=Possible pseudogene of M. tuberculosis orthologue pknI (Best blastx score 190);gbkey=CDS;gene=pknI;product=serine-threonine protein kinase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1942740	1943805	.	-	.	ID=gene-ML1621;Name=ML1621;gbkey=Gene;gene=ML1621;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1942740	1943805	.	-	0	ID=cds-ML1621;Parent=gene-ML1621;Note=Possible pseudogene of M. tuberculosis orthologue Rv2915c (Best blastx score 434);gbkey=CDS;gene=ML1621;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1943801	1945366	.	-	.	ID=gene-ffh;Name=ffh;gbkey=Gene;gene=ffh;gene_biotype=protein_coding;gene_synonym=ML1622
AL450380.1	EMBL	CDS	1943801	1945366	.	-	0	ID=cds-CAC30573.1;Parent=gene-ffh;Dbxref=GOA:O33013,InterPro:IPR000897,InterPro:IPR003593,InterPro:IPR004125,InterPro:IPR004780,InterPro:IPR013822,InterPro:IPR022941,InterPro:IPR027417,NCBI_GP:CAC30573.1;Name=CAC30573.1;Note=Highly similar to many signal recognition particle proteins%2C involved in the reconition of the signal sequence and the efficient export of the protein%2C including: Bacillus subtilis SW:SR54_BACSU (P37105) (446 aa)%3B Fasta score E(): 0%2C 51.0%25 identity in 435 aa overlap and Mycobacterium tuberculosis RV2916C SW:SR54_MYCTU (Q10963) (525 aa)%3B Fasta score E(): 0%2C 87.8%25 identity in 526 aa overlap. Contains Pfam match to entry PF00448 SRP54%2C SRP54-type protein. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ffh;product=signal recognition particle protein;protein_id=CAC30573.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1944464	1945288	.	-	.	ID=id-ffh;Note=Pfam match to entry PF00448 SRP54%2C SRP54-type protein%2C score 406.10%2C E-value 3.3e-118;gbkey=misc_feature;gene=ffh
AL450380.1	EMBL	sequence_feature	1945025	1945048	.	-	.	ID=id-ffh-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ffh
AL450380.1	EMBL	gene	1945505	1947475	.	+	.	ID=gene-htpG;Name=htpG;gbkey=Gene;gene=htpG;gene_biotype=protein_coding;gene_synonym=ML1623
AL450380.1	EMBL	CDS	1945505	1947475	.	+	0	ID=cds-CAC30574.1;Parent=gene-htpG;Dbxref=GOA:O33012,InterPro:IPR001404,InterPro:IPR003594,InterPro:IPR019805,InterPro:IPR020568,InterPro:IPR020575,NCBI_GP:CAC30574.1;Name=CAC30574.1;Note=Highly similar to many heat shock 90 family proteins%2C including: Escherichia coli SW:HTPG_ECOLI (P10413) (624 aa)%3B Fasta score E(): 0%2C 45.4%25 identity in 656 aa overlap and Mycobacterium tuberculosis RV2299C SW:HTPG_MYCTU (Q50667) (647 aa)%3B Fasta score E(): 0%2C 80.8%25 identity in 656 aa overlap. Contains 2 Pfam matches to entry PF00183 HSP90%2C Hsp90 protein. Contains PS00298 Heat shock hsp90 proteins family signature.;gbkey=CDS;gene=htpG;product=heat shock protein Hsp90 family;protein_id=CAC30574.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1945514	1946182	.	+	.	ID=id-htpG;Note=Pfam match to entry PF00183 HSP90%2C Hsp90 protein%2C score 293.40%2C E-value 2.8e-84;gbkey=misc_feature;gene=htpG
AL450380.1	EMBL	sequence_feature	1945580	1945609	.	+	.	ID=id-htpG-2;Note=PS00298 Heat shock hsp90 proteins family signature;gbkey=misc_feature;gene=htpG
AL450380.1	EMBL	sequence_feature	1946225	1947439	.	+	.	ID=id-htpG-3;Note=Pfam match to entry PF00183 HSP90%2C Hsp90 protein%2C score 601.90%2C E-value 3.8e-177;gbkey=misc_feature;gene=htpG
AL450380.1	EMBL	gene	1947637	1949427	.	+	.	ID=gene-ML1624;Name=ML1624;gbkey=Gene;gene=ML1624;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1947637	1949427	.	+	0	ID=cds-CAC30575.1;Parent=gene-ML1624;Dbxref=GOA:O33011,InterPro:IPR001650,InterPro:IPR006935,InterPro:IPR014001,InterPro:IPR027417,NCBI_GP:CAC30575.1;Name=CAC30575.1;Note=Highly similar to several proteins of unknown function including: Mycobacterium tuberculosis RV2917 SW:YT17_MYCTU (Q10966) (626 aa)%3B Fasta score E(): 0%2C 79.8%25 identity in 584 aa overlap and Streptomyces coelicolor TR:Q9S3Y6 (EMBL:AF170560) (597 aa)%3B Fasta score E(): 0%2C 55.5%25 identity in 566 aa overlap. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML1624;product=conserved hypothetical protein;protein_id=CAC30575.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1947805	1947828	.	+	.	ID=id-ML1624;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1624
AL450380.1	EMBL	pseudogene	1949517	1951558	.	-	.	ID=gene-glnD;Name=glnD;gbkey=Gene;gene=glnD;gene_biotype=pseudogene;gene_synonym=ML1625;pseudo=true
AL450380.1	EMBL	CDS	1949517	1951558	.	-	0	ID=cds-glnD;Parent=gene-glnD;Note=Possible pseudogene of M. tuberculosis orthologue glnD (Best blastx score 428);gbkey=CDS;gene=glnD;product=uridylyltransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1951862	1952196	.	-	.	ID=gene-glnB;Name=glnB;gbkey=Gene;gene=glnB;gene_biotype=pseudogene;gene_synonym=ML1626;pseudo=true
AL450380.1	EMBL	CDS	1951862	1952196	.	-	0	ID=cds-glnB;Parent=gene-glnB;Note=Possible pseudogene of M. tuberculosis orthologue glnB (Best blastx score 227);gbkey=CDS;gene=glnB;product=nitrogen regulatory protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1952196	1953297	.	-	.	ID=gene-amt;Name=amt;gbkey=Gene;gene=amt;gene_biotype=pseudogene;gene_synonym=ML1627;pseudo=true
AL450380.1	EMBL	CDS	1952196	1953297	.	-	0	ID=cds-amt;Parent=gene-amt;Note=Possible pseudogene of M. tuberculosis orthologue amt (Best blastx score 233);gbkey=CDS;gene=amt;product=putative ammonium transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1953448	1954740	.	-	.	ID=gene-ML1628;Name=ML1628;gbkey=Gene;gene=ML1628;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1953448	1954740	.	-	0	ID=cds-CAC30579.1;Parent=gene-ML1628;Dbxref=GOA:O33010,InterPro:IPR000897,InterPro:IPR003593,InterPro:IPR004390,InterPro:IPR013822,InterPro:IPR027417,NCBI_GP:CAC30579.1;Name=CAC30579.1;Note=Highly similar to the C-terminal portion of many proposed SRP family cell division proteins thought to be involved with protein export such as: Escherichia coli FtsY SW:FTSY_ECOLI (P10121) (497 aa)%3B Fasta score E(): 0%2C 40.5%25 identity in 338 aa overlap. Also highly similar over the entire range to Mycobacterium tuberculosis RV2921C SW:FTSY_MYCTU (Q10969) (422 aa)%3B Fasta score E(): 0%2C 81.4%25 identity in 429 aa overlap. Contains a possible N-terminal signal sequence. Contains Pfam match to entry PF00448 SRP54%2C SRP54-type protein. Contains PS00300 SRP54-type proteins GTP-binding domain signature. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML1628;product=possible SRP family of GTP-binding protein;protein_id=CAC30579.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1953454	1954266	.	-	.	ID=id-ML1628;Note=Pfam match to entry PF00448 SRP54%2C SRP54-type protein%2C score 262.00%2C E-value 7.7e-75;gbkey=misc_feature;gene=ML1628
AL450380.1	EMBL	sequence_feature	1953493	1953534	.	-	.	ID=id-ML1628-2;Note=PS00300 SRP54-type proteins GTP-binding domain signature;gbkey=misc_feature;gene=ML1628
AL450380.1	EMBL	sequence_feature	1954006	1954029	.	-	.	ID=id-ML1628-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1628
AL450380.1	EMBL	gene	1954854	1958465	.	-	.	ID=gene-smc;Name=smc;gbkey=Gene;gene=smc;gene_biotype=protein_coding;gene_synonym=ML1629
AL450380.1	EMBL	CDS	1954854	1958465	.	-	0	ID=cds-CAC30580.1;Parent=gene-smc;Dbxref=GOA:Q9CBT5,InterPro:IPR003395,InterPro:IPR003593,InterPro:IPR010935,InterPro:IPR011890,InterPro:IPR024704,InterPro:IPR027417,NCBI_GP:CAC30580.1;Name=CAC30580.1;Note=Highly similar to many proteins involved in chromosome segregation and partition including: Bacillus subtilis Smc SW:SMC_BACSU (P51834) (1186 aa)%3B Fasta score E(): 0%2C 31.5%25 identity in 1242 aa overlap and Mycobacterium tuberculosis RV2922C SW:SMC_MYCTU (Q1097) (1289 aa)%3B Fasta score E(): 0%2C 79.2%25 identity in 1208 aa overlap. Contains multiple possible coiled-coiled regions between residues 174..190%2C 260..279%2C 340..374%2C 397..433%2C 451..489%2C 725..754. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=smc;product=possible cell division protein;protein_id=CAC30580.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1958352	1958375	.	-	.	ID=id-smc;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=smc
AL450380.1	EMBL	repeat_region	1958773	1959830	.	+	.	ID=id-AL450380.1:1958773..1959830;Note=Dispersed repeat%2C RLEP%2C copy 26;gbkey=repeat_region
AL450380.1	EMBL	gene	1959885	1962899	.	-	.	ID=gene-glnE;Name=glnE;gbkey=Gene;gene=glnE;gene_biotype=protein_coding;gene_synonym=ML1630
AL450380.1	EMBL	CDS	1959885	1962899	.	-	0	ID=cds-CAC30581.1;Parent=gene-glnE;Dbxref=GOA:Q9CBT4,InterPro:IPR005190,InterPro:IPR013546,InterPro:IPR023057,NCBI_GP:CAC30581.1;Name=CAC30581.1;Note=Similar to several glutamate-ammonia-ligase adenylyltransferases (EC 2.7.7.42) including: Escherichia coli SW:GLNE_ECOLI (P30870) (946 aa)%3B Fasta score E(): 2.4e-21%2C 28.2%25 identity in 929 aa overlap and Mycobacterium tuberculosis RV2221C SW:GLNE_MYCTU (Q10379) (994 aa)%3B Fasta score E(): 0%2C 82.8%25 identity in 998 aa overlap.;gbkey=CDS;gene=glnE;product=glutamate-ammonia-ligase adenyltransferase;protein_id=CAC30581.1;transl_table=11
AL450380.1	EMBL	gene	1962930	1964276	.	-	.	ID=gene-glnA2;Name=glnA2;gbkey=Gene;gene=glnA2;gene_biotype=protein_coding;gene_synonym=ML1631
AL450380.1	EMBL	CDS	1962930	1964276	.	-	0	ID=cds-CAC30582.1;Parent=gene-glnA2;Dbxref=GOA:Q9CBT3,InterPro:IPR004809,InterPro:IPR008146,InterPro:IPR008147,InterPro:IPR014746,InterPro:IPR027303,UniProtKB/TrEMBL:Q9CBT3,NCBI_GP:CAC30582.1;Name=CAC30582.1;Note=Highly similar to many glutamine synthetases (EC 6.3.1.2) including: Bacillus subtilis SW:GLNA_BACSU (P12425) (443 aa)%3B Fasta score E(): 0%2C 45.4%25 identity in 445 aa overlap and Mycobacterium tuberculosis RV2222C SW:GLN2_MYCTU (Q10378) (446 aa)%3B Fasta score E(): 0%2C 93.3%25 identity in 448 aa overlap. Contains Pfam match to entry PF00120 gln-synt%2C Glutamine synthetase.%3B~Similar to ML0925;gbkey=CDS;gene=glnA2;product=glutamine synthase class II;protein_id=CAC30582.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1963221	1964225	.	-	.	ID=id-glnA2;Note=Pfam match to entry PF00120 gln-synt%2C Glutamine synthetase%2C score 414.80%2C E-value 1.5e-131;gbkey=misc_feature;gene=glnA2
AL450380.1	EMBL	gene	1964373	1965908	.	-	.	ID=gene-ML1632;Name=ML1632;gbkey=Gene;gene=ML1632;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1964373	1965908	.	-	0	ID=cds-CAC30583.1;Parent=gene-ML1632;Dbxref=GOA:Q9CBT2,InterPro:IPR000073,InterPro:IPR013595,InterPro:IPR029058,UniProtKB/TrEMBL:Q9CBT2,NCBI_GP:CAC30583.1;Name=CAC30583.1;Note=Highly similar to several including: Streptomyces lividans tripeptidylaminopeptidase precursor TR:Q54410 (EMBL:L27466) (537 aa)%3B Fasta score E(): 0%2C 30.9%25 identity in 489 aa overlap and several proteins of undefined function e.g. Mycobacterium tuberculosis RV2223C SW:YM23_MYCTU (Q10508) (520 aa)%3B Fasta score E(): 0%2C 75.8%25 identity in 520 aa overlap. Contains Pfam match to entry PF00561 abhydrolase%2C alpha/beta hydrolase fold.%3B~Similar to ML1633;gbkey=CDS;gene=ML1632;product=possible hydrolase;protein_id=CAC30583.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1964685	1965524	.	-	.	ID=id-ML1632;Note=Pfam match to entry PF00561 abhydrolase%2C alpha/beta hydrolase fold%2C score 83.30%2C E-value 4.9e-21;gbkey=misc_feature;gene=ML1632
AL450380.1	EMBL	gene	1965983	1967590	.	-	.	ID=gene-ML1633;Name=ML1633;gbkey=Gene;gene=ML1633;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1965983	1967590	.	-	0	ID=cds-CAC30584.1;Parent=gene-ML1633;Dbxref=GOA:Q9CBT1,InterPro:IPR000073,InterPro:IPR029058,UniProtKB/TrEMBL:Q9CBT1,NCBI_GP:CAC30584.1;Name=CAC30584.1;Note=Highly similar to several including: Streptomyces lividans tripeptidylaminopeptidase precursor TR:Q54410 (EMBL:L27466) (537 aa)%3B Fasta score E(): 4.3e-23%2C 30.7%25 identity in 508 aa overlap and several proteins of undefined function e.g. Mycobacterium tuberculosis RV2223C SW:YM23_MYCTU (Q10508) (520 aa)%3B Fasta score E(): 0%2C 50.1%25 identity in 511 aa overlap. Note this CDS is also highly similar to the adjoining CDS ML1632. Contains a possible N-terminal signal sequence. Contains Pfam match to entry PF00561 abhydrolase%2C alpha/beta hydrolase fold.%3B~Similar to ML1632;gbkey=CDS;gene=ML1633;product=possible secreted hydrolase;protein_id=CAC30584.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1966022	1967146	.	-	.	ID=id-ML1633;Note=Pfam match to entry PF00561 abhydrolase%2C alpha/beta hydrolase fold%2C score 118.50%2C E-value 1.3e-31;gbkey=misc_feature;gene=ML1633
AL450380.1	EMBL	pseudogene	1967669	1968957	.	-	.	ID=gene-ML1634;Name=ML1634;gbkey=Gene;gene=ML1634;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1967669	1968957	.	-	0	ID=cds-ML1634;Parent=gene-ML1634;Note=Possible pseudogene of M. tuberculosis orthologue Rv0895 (Best blastx score 98)%3B~Possible pseudogene of M. tuberculosis orthologue Rv1760.;gbkey=CDS;gene=ML1634;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1969128	1969988	.	+	.	ID=gene-panB;Name=panB;gbkey=Gene;gene=panB;gene_biotype=protein_coding;gene_synonym=ML1635
AL450380.1	EMBL	CDS	1969128	1969988	.	+	0	ID=cds-CAC30586.1;Parent=gene-panB;Dbxref=GOA:Q9CBT0,InterPro:IPR003700,InterPro:IPR015813,NCBI_GP:CAC30586.1;Name=CAC30586.1;Note=Highly similar to 3-methyl-2-oxobutanoate hydroxymethyltransferases (EC 2.1.2.11) from Escherichia coli SW:PANB_ECOLI (P31057) (264 aa)%3B Fasta score E(): 0%2C 45.9%25 identity in 257 aa overlap and Mycobacterium tuberculosis RV2225 SW:PANB_MYCTU (Q10505) (281 aa)%3B Fasta score E(): 0%2C 82.6%25 identity in 287 aa overlap.;gbkey=CDS;gene=panB;product=3-methyl-2-oxobutanoate hydroxymethyltransferase;protein_id=CAC30586.1;transl_table=11
AL450380.1	EMBL	pseudogene	1970373	1971813	.	+	.	ID=gene-ML1636;Name=ML1636;gbkey=Gene;gene=ML1636;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1970373	1971813	.	+	0	ID=cds-ML1636;Parent=gene-ML1636;Note=Possible pseudogene of M. tuberculosis orthologue Rv2226 (Best blastx score 294);gbkey=CDS;gene=ML1636;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1971898	1972210	.	-	.	ID=gene-rnpB;Name=rnpB;gbkey=Gene;gene=rnpB;gene_biotype=misc_RNA
AL450380.1	EMBL	transcript	1971898	1972210	.	-	.	ID=rna-rnpB;Parent=gene-rnpB;Note=ribonuclease P RNA%2C (rnpB);gbkey=misc_RNA;gene=rnpB
AL450380.1	EMBL	exon	1971898	1972210	.	-	.	ID=exon-rnpB-1;Parent=rna-rnpB;Note=ribonuclease P RNA%2C (rnpB);gbkey=misc_RNA;gene=rnpB
AL450380.1	EMBL	gene	1974010	1975125	.	-	.	ID=gene-ML1637;Name=ML1637;gbkey=Gene;gene=ML1637;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1974010	1975125	.	-	0	ID=cds-CAC30588.1;Parent=gene-ML1637;Dbxref=GOA:Q7AQ37,InterPro:IPR002156,InterPro:IPR012337,InterPro:IPR013078,InterPro:IPR014636,InterPro:IPR029033,UniProtKB/TrEMBL:Q7AQ37,NCBI_GP:CAC30588.1;Name=CAC30588.1;Note=Similar in parts to many. The N-terminus is similar to several ribonucleases e.g. Escherichia coli ribonuclease HI (EC 3.1.26.4) SW:RNH_ECOLI (P00647) (430 aa)%3B BlastP Expect 8.7. The C-terminus is similar to many proteins belonging to the phosphoglycerate mutase family e.g. Escherichia coli SW:COBC_ECOLI (P52086) (430 aa)%3B BlastP Expect 8.7. Similar over the whole range to Mycobacterium tuberculosis hypothetical protein RV2228C SW:YM28_MYCTU (Q10512) (364 aa)%3B Fasta score E(): 0%2C 76.8%25 identity in 371 aa overlap. Contains Pfam match to entry PF00300 PGAM%2C Phosphoglycerate mutase family.;gbkey=CDS;gene=ML1637;product=conserved hypothetical protein;protein_id=CAC30588.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1974055	1974603	.	-	.	ID=id-ML1637;Note=Pfam match to entry PF00300 PGAM%2C Phosphoglycerate mutase family%2C score 274.90%2C E-value 1.1e-78;gbkey=misc_feature;gene=ML1637
AL450380.1	EMBL	gene	1975122	1975820	.	-	.	ID=gene-ML1638;Name=ML1638;gbkey=Gene;gene=ML1638;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1975122	1975820	.	-	0	ID=cds-CAC30589.1;Parent=gene-ML1638;Dbxref=InterPro:IPR003743,NCBI_GP:CAC30589.1;Name=CAC30589.1;Note=Highly similar to several proteins of undefined function e.g. Mycobacterium tuberculosis RV2229C SW:YM29_MYCTU (Q10513) (245 aa)%3B Fasta score E(): 0%2C 60.9%25 identity in 230 aa overlap. Contains a possible coiled-coil between residues 100..139.;gbkey=CDS;gene=ML1638;product=conserved hypothetical protein;protein_id=CAC30589.1;transl_table=11
AL450380.1	EMBL	gene	1975866	1977023	.	-	.	ID=gene-ML1639;Name=ML1639;gbkey=Gene;gene=ML1639;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1975866	1977023	.	-	0	ID=cds-CAC30590.1;Parent=gene-ML1639;Dbxref=GOA:O69481,InterPro:IPR002678,InterPro:IPR017221,NCBI_GP:CAC30590.1;Name=CAC30590.1;Note=Highly similar to several proteins of undefined function e.g. Mycobacterium tuberculosis RV2230C SW:YM30_MYCTU (Q10514) (379 aa)%3B Fasta score E(): 0%2C 79.5%25 identity in 385 aa overlap. Contains Pfam match to entry PF01784 DUF34%2C Domain of unknown function.;gbkey=CDS;gene=ML1639;product=conserved hypothetical protein;protein_id=CAC30590.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1976283	1976990	.	-	.	ID=id-ML1639;Note=Pfam match to entry PF01784 DUF34%2C Domain of unknown function%2C score 252.40%2C E-value 6.1e-72;gbkey=misc_feature;gene=ML1639
AL450380.1	EMBL	ribosome_entry_site	1977027	1977033	.	-	.	ID=id-AL450380.1:1977027..1977033;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	1977059	1978052	.	-	.	ID=gene-cobC;Name=cobC;gbkey=Gene;gene=cobC;gene_biotype=pseudogene;gene_synonym=ML1640;pseudo=true
AL450380.1	EMBL	CDS	1977059	1978052	.	-	0	ID=cds-cobC;Parent=gene-cobC;Note=Possible pseudogene of M. tuberculosis orthologue cobC (Best blastx score 299);gbkey=CDS;gene=cobC;product=aminotransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1978105	1978275	.	+	.	ID=gene-ML1641;Name=ML1641;gbkey=Gene;gene=ML1641;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1978105	1978275	.	+	0	ID=cds-ML1641;Parent=gene-ML1641;Note=Possible pseudogene of M. tuberculosis orthologue Rv2232;gbkey=CDS;gene=ML1641;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1978276	1978512	.	+	.	ID=gene-ML1642;Name=ML1642;gbkey=Gene;gene=ML1642;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1978276	1978512	.	+	0	ID=cds-ML1642;Parent=gene-ML1642;Note=Possible pseudogene of M. tuberculosis orthologue Rv2233;gbkey=CDS;gene=ML1642;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1978475	1978958	.	+	.	ID=gene-ptpA;Name=ptpA;gbkey=Gene;gene=ptpA;gene_biotype=pseudogene;gene_synonym=ML1643;pseudo=true
AL450380.1	EMBL	CDS	1978475	1978958	.	+	0	ID=cds-ptpA;Parent=gene-ptpA;Note=Possible pseudogene of M. tuberculosis orthologue ptpA (Best blastx score 453);gbkey=CDS;gene=ptpA;product=low molecular weight protein-tyrosine-phosphatase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1978961	1979773	.	+	.	ID=gene-ML1644;Name=ML1644;gbkey=Gene;gene=ML1644;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1978961	1979773	.	+	0	ID=cds-CAC30595.1;Parent=gene-ML1644;Dbxref=GOA:Q7AQ36,InterPro:IPR002994,UniProtKB/TrEMBL:Q7AQ36,NCBI_GP:CAC30595.1;Name=CAC30595.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein RV2235 SW:YM35_MYCTU (Q10517) (271 aa)%3B Fasta score E(): 0%2C 74.2%25 identity in 271 aa overlap. Contains a possible N-terminal signal sequence and another possible membrane spanning hydrophobic domain.;gbkey=CDS;gene=ML1644;product=conserved membrane protein;protein_id=CAC30595.1;transl_table=11
AL450380.1	EMBL	pseudogene	1979758	1980676	.	-	.	ID=gene-cobD;Name=cobD;gbkey=Gene;gene=cobD;gene_biotype=pseudogene;gene_synonym=ML1645;pseudo=true
AL450380.1	EMBL	CDS	1979758	1980676	.	-	0	ID=cds-cobD;Parent=gene-cobD;Note=Possible pseudogene of M. tuberculosis orthologue cobD (Best blastx score 204);gbkey=CDS;gene=cobD;product=cobinamide synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1983839	1984132	.	-	.	ID=gene-ML1646;Name=ML1646;gbkey=Gene;gene=ML1646;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1983839	1984132	.	-	0	ID=cds-ML1646;Parent=gene-ML1646;Note=Possible pseudogene of M. tuberculosis orthologue Rv1045 (Best blastx score 116);gbkey=CDS;gene=ML1646;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	1984402	1984862	.	-	.	ID=gene-ML1647;Name=ML1647;gbkey=Gene;gene=ML1647;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1984402	1984862	.	-	0	ID=cds-ML1647;Parent=gene-ML1647;Note=Possible pseudogene of M. tuberculosis orthologue Rv1044 (Best blastx score 117);gbkey=CDS;gene=ML1647;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1987240	1987314	.	-	.	ID=gene-valV;Name=valV;gbkey=Gene;gene=valV;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	1987240	1987314	.	-	.	ID=rna-valV;Parent=gene-valV;Note=tRNA Val anticodon TAC%2C Cove score 84.14;gbkey=tRNA;gene=valV;product=tRNA-Val
AL450380.1	EMBL	exon	1987240	1987314	.	-	.	ID=exon-valV-1;Parent=rna-valV;Note=tRNA Val anticodon TAC%2C Cove score 84.14;gbkey=tRNA;gene=valV;product=tRNA-Val
AL450380.1	EMBL	pseudogene	1987385	1987829	.	-	.	ID=gene-ahpE;Name=ahpE;gbkey=Gene;gene=ahpE;gene_biotype=pseudogene;gene_synonym=ML1648;pseudo=true
AL450380.1	EMBL	CDS	1987385	1987829	.	-	0	ID=cds-ahpE;Parent=gene-ahpE;Note=Possible pseudogene of M. tuberculosis orthologue ahpE (Best blastx score 175);gbkey=CDS;gene=ahpE;product=member of AhpC/TSA family (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1987829	1988251	.	-	.	ID=gene-ML1649;Name=ML1649;gbkey=Gene;gene=ML1649;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1987829	1988251	.	-	0	ID=cds-CAC30600.1;Parent=gene-ML1649;Dbxref=InterPro:IPR021412,UniProtKB/TrEMBL:Q7AQ35,NCBI_GP:CAC30600.1;Name=CAC30600.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein RV2239C SW:YM39_MYCTU (Q10521) (158 aa)%3B Fasta score E(): 0%2C 86.4%25 identity in 140 aa overlap.;gbkey=CDS;gene=ML1649;product=conserved hypothetical protein;protein_id=CAC30600.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	1988259	1988263	.	-	.	ID=id-AL450380.1:1988259..1988263;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	1988384	1989196	.	-	.	ID=gene-ML1650;Name=ML1650;gbkey=Gene;gene=ML1650;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	1988384	1989196	.	-	0	ID=cds-ML1650;Parent=gene-ML1650;Note=Possible pseudogene of M. tuberculosis orthologue Rv2240c (Best blastx score 203);gbkey=CDS;gene=ML1650;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	1989164	1991974	.	+	.	ID=gene-aceE;Name=aceE;gbkey=Gene;gene=aceE;gene_biotype=protein_coding;gene_synonym=ML1651
AL450380.1	EMBL	CDS	1989164	1991974	.	+	0	ID=cds-CAC30602.1;Parent=gene-aceE;Dbxref=GOA:Q9CBS8,InterPro:IPR004660,InterPro:IPR005474,InterPro:IPR009014,InterPro:IPR029061,UniProtKB/TrEMBL:Q9CBS8,NCBI_GP:CAC30602.1;Name=CAC30602.1;Note=Highly similar to many pyruvate dehydrogenases including: Escherichia coli pyruvate dehydrogenase E1 component (EC 1.2.4.1) SW:ODP1_ECOLI (P06958) (886 aa)%3B Fasta score E(): 0%2C 51.3%25 identity in 892 aa overlap and Mycobacterium tuberculosis RV2241 SW:ODP1_MYCTU (Q10504) (901 aa)%3B Fasta score E(): 0%2C 89.5%25 identity in 904 aa overlap.;gbkey=CDS;gene=aceE;product=pyruvate dehydrogenase E1 component;protein_id=CAC30602.1;transl_table=11
AL450380.1	EMBL	gene	1992060	1993304	.	+	.	ID=gene-ML1652;Name=ML1652;gbkey=Gene;gene=ML1652;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1992060	1993304	.	+	0	ID=cds-CAC30603.1;Parent=gene-ML1652;Dbxref=GOA:Q7AQ34,InterPro:IPR009057,InterPro:IPR025736,UniProtKB/TrEMBL:Q7AQ34,NCBI_GP:CAC30603.1;Name=CAC30603.1;Note=Highly similar to proteins of unknown function from Streptomyces coelicolor TR:Q9RDP8 (EMBL:AL133423) (401 aa)%3B Fasta score E(): 4.3e-26%2C 42.0%25 identity in 383 aa overlap and Mycobacterium tuberculosis RV2242 TR:YM42_MYCTU. Contains a probable helix-turn-helix motif at aa 359-380 (Score 1390%2C SD +3.92);gbkey=CDS;gene=ML1652;product=conserved hypothetical protein;protein_id=CAC30603.1;transl_table=11
AL450380.1	EMBL	gene	1993515	1994429	.	+	.	ID=gene-fabD;Name=fabD;gbkey=Gene;gene=fabD;gene_biotype=protein_coding;gene_synonym=ML1653
AL450380.1	EMBL	CDS	1993515	1994429	.	+	0	ID=cds-CAC30604.1;Parent=gene-fabD;Dbxref=GOA:Q7AQ33,InterPro:IPR001227,InterPro:IPR014043,InterPro:IPR016035,InterPro:IPR016036,UniProtKB/TrEMBL:Q7AQ33,NCBI_GP:CAC30604.1;Name=CAC30604.1;Note=Similar to many malonyl CoA-acyl carrier protein transacylases (EC 2.3.1.39) involved in fatty acid biosynthesis%2C including: Salmonella typhimurium SW:FABD_SALTY (O85140) (308 aa)%3B Fasta score E(): 1.6e-19%2C 32.7%25 identity in 303 aa overlap and Mycobacterium tuberculosis SW:FABD_MYCTU (Q10501) (302 aa)%3B Fasta score E(): 0%2C 82.2%25 identity in 304 aa overlap. Contains Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain.;gbkey=CDS;gene=fabD;product=malonyl CoA-[ACP] transacylase;protein_id=CAC30604.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1993518	1994426	.	+	.	ID=id-fabD;Note=Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain%2C score 7.10%2C E-value 2.1e-10;gbkey=misc_feature;gene=fabD
AL450380.1	EMBL	gene	1994529	1994876	.	+	.	ID=gene-acpM;Name=acpM;gbkey=Gene;gene=acpM;gene_biotype=protein_coding;gene_synonym=ML1654
AL450380.1	EMBL	CDS	1994529	1994876	.	+	0	ID=cds-CAC30605.1;Parent=gene-acpM;Dbxref=GOA:O69475,InterPro:IPR003231,InterPro:IPR009081,NCBI_GP:CAC30605.1;Name=CAC30605.1;Note=Highly similar to many acyl carrier proteins involved in fatty acid biosynthesis including: Myxococcus xanthus SW:ACP_MYXXA (P80921) (78 aa)%3B Fasta score E(): 6.1e-13%2C 59.5%25 identity in 74 aa overlap and Mycobacterium tuberculosis Rv2244 SW:ACP_MYCTU (Q10500) (115 aa)%3B Fasta score E(): 0%2C 94.7%25 identity in 113 aa overlap. Contains Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site.;gbkey=CDS;gene=acpM;product=acyl carrier protein (meromycolate extension);protein_id=CAC30605.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1994556	1994759	.	+	.	ID=id-acpM;Note=Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site%2C score 78.90%2C E-value 3.2e-20;gbkey=misc_feature;gene=acpM
AL450380.1	EMBL	gene	1994873	1996123	.	+	.	ID=gene-kasA;Name=kasA;gbkey=Gene;gene=kasA;gene_biotype=protein_coding;gene_synonym=ML1655
AL450380.1	EMBL	CDS	1994873	1996123	.	+	0	ID=cds-CAC30606.1;Parent=gene-kasA;Dbxref=GOA:Q9CBS7,InterPro:IPR014030,InterPro:IPR014031,InterPro:IPR016038,InterPro:IPR016039,NCBI_GP:CAC30606.1;Name=CAC30606.1;Note=Highly similar to many 3-oxoacyl-[acyl-carrier-protein] synthases II (EC 2.3.1.41) involved in fatty acid biosynthesis including: Escherichia coli SW:FABF_ECOLI (P39435) (412 aa)%3B Fasta score E(): 0%2C 41.1%25 identity in 411 aa overlap and Mycobacterium tuberculosis RV2245 SW:FAB1_MYCTU (Q10524) (416 aa)%3B Fasta score E(): 0%2C 92.5%25 identity in 416 aa overlap. Also highly similar to the adjoining CDS ML1655. Contains Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase.%3B~Similar to ML1656;gbkey=CDS;gene=kasA;product=3-oxoacyl-[acyl-carrier-protein] synthase;protein_id=CAC30606.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1994915	1996120	.	+	.	ID=id-kasA;Note=Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase%2C score 94.10%2C E-value 2.8e-24;gbkey=misc_feature;gene=kasA
AL450380.1	EMBL	gene	1996136	1997413	.	+	.	ID=gene-kasB;Name=kasB;gbkey=Gene;gene=kasB;gene_biotype=protein_coding;gene_synonym=ML1656
AL450380.1	EMBL	CDS	1996136	1997413	.	+	0	ID=cds-CAC30607.1;Parent=gene-kasB;Dbxref=GOA:O69473,InterPro:IPR014030,InterPro:IPR014031,InterPro:IPR016038,InterPro:IPR016039,NCBI_GP:CAC30607.1;Name=CAC30607.1;Note=Highly similar to many 3-oxoacyl-[acyl-carrier-protein] synthases II (EC 2.3.1.41) involved in fatty acid biosynthesis including: Escherichia coli SW:FABF_ECOLI (P39435) (412 aa)%3B Fasta score E(): 0%2C 36.2%25 identity in 409 aa overlap and Mycobacterium tuberculosis RV2246 SW:FAB2_MYCTU (Q10525) (438 aa)%3B Fasta score E(): 0%2C 90.8%25 identity in 423 aa overlap. Also highly similar to the adjoining CDS ML1655. Contains Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.%3B~Similar to ML1655;gbkey=CDS;gene=kasB;product=3-oxoacyl-[acyl-carrier-protein] synthase;protein_id=CAC30607.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1996196	1997410	.	+	.	ID=id-kasB;Note=Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase%2C score 113.80%2C E-value 3.3e-30;gbkey=misc_feature;gene=kasB
AL450380.1	EMBL	sequence_feature	1997375	1997407	.	+	.	ID=id-kasB-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=kasB
AL450380.1	EMBL	gene	1997444	1998865	.	+	.	ID=gene-ML1657;Name=ML1657;gbkey=Gene;gene=ML1657;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	1997444	1998865	.	+	0	ID=cds-CAC30608.1;Parent=gene-ML1657;Dbxref=GOA:Q7AQ32,InterPro:IPR000022,InterPro:IPR011762,InterPro:IPR011763,InterPro:IPR029045,UniProtKB/TrEMBL:Q7AQ32,NCBI_GP:CAC30608.1;Name=CAC30608.1;Note=Highly similar to many propionyl-CoA carboxylases involved in fatty acid catabolism including: Rhodococcus erythropolis SW:PCCB_RHOER (Q06101) (476 aa)%3B Fasta score E(): 0%2C 70.9%25 identity in 477 aa overlap and Mycobacterium tuberculosis RV2247 SW:PCCB_MYCTU (Q10506) (473 aa)%3B Fasta score E(): 0%2C 92.8%25 identity in 473 aa overlap. Contains Pfam match to entry PF01039 Carboxyl_trans%2C Carboxyl transferase domain. Contains PS00017 ATP/GTP-binding site motif A (P-loop).%3B~Similar to ML0731;gbkey=CDS;gene=ML1657;product=acetyl/propionyl CoA carboxylase [beta] subunit;protein_id=CAC30608.1;transl_table=11
AL450380.1	EMBL	sequence_feature	1997444	1998862	.	+	.	ID=id-ML1657;Note=Pfam match to entry PF01039 Carboxyl_trans%2C Carboxyl transferase domain%2C score 688.40%2C E-value 3.4e-203;gbkey=misc_feature;gene=ML1657
AL450380.1	EMBL	sequence_feature	1997456	1997479	.	+	.	ID=id-ML1657-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1657
AL450380.1	EMBL	stem_loop	1998874	1998923	.	-	.	ID=id-AL450380.1:1998874..1998923;Note=50 bp palindrome;gbkey=stem_loop
AL450380.1	EMBL	repeat_region	1999045	1999744	.	+	.	ID=id-AL450380.1:1999045..1999744;Note=Dispersed repeat%2C RLEP%2C copy 27;gbkey=repeat_region
AL450380.1	EMBL	gene	1999991	2000839	.	-	.	ID=gene-fpg;Name=fpg;gbkey=Gene;gene=fpg;gene_biotype=protein_coding;gene_synonym=ML1658
AL450380.1	EMBL	CDS	1999991	2000839	.	-	0	ID=cds-CAC30611.1;Parent=gene-fpg;Dbxref=GOA:O69470,InterPro:IPR000191,InterPro:IPR000214,InterPro:IPR010663,InterPro:IPR010979,InterPro:IPR012319,InterPro:IPR015886,InterPro:IPR015887,InterPro:IPR020629,NCBI_GP:CAC30611.1;Name=CAC30611.1;Note=Highly similar to many formamidopyrimidine-DNA glycosylases (EC 3.2.2.23) thought to be involved in DNA repair after exposure to alkylating agents e.g. Escherichia coli SW:FPG_ECOLI (P05523) (215 aa)%3B BlastP Expect 8.7 and Mycobacterium tuberculosis SW:FPG_MYCTU (Q10959) (289 aa)%3B Fasta score E(): 0%2C 80.6%25 identity in 289 aa overlap. Contains Pfam match to entry PF01149 Fapy_DNA_glyco%2C Formamidopyrimidine-DNA glycosylase.;gbkey=CDS;gene=fpg;product=formamidopyrimidine-DNA glycosylase;protein_id=CAC30611.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2000009	2000839	.	-	.	ID=id-fpg;Note=Pfam match to entry PF01149 Fapy_DNA_glyco%2C Formamidopyrimidine-DNA glycosylase%2C score 531.10%2C E-value 7.8e-156;gbkey=misc_feature;gene=fpg
AL450380.1	EMBL	gene	2000894	2001610	.	-	.	ID=gene-rnc;Name=rnc;gbkey=Gene;gene=rnc;gene_biotype=protein_coding;gene_synonym=ML1659
AL450380.1	EMBL	CDS	2000894	2001610	.	-	0	ID=cds-CAC30612.1;Parent=gene-rnc;Dbxref=GOA:O69469,InterPro:IPR000999,InterPro:IPR011907,InterPro:IPR014720,NCBI_GP:CAC30612.1;Name=CAC30612.1;Note=Highly similar to many ribonucleases involved in the digestion of double stranded RNA e.g. Escherichia coli SW:RNC_ECOLI (P05797) (226 aa)%3B Fasta score E(): 1e-24%2C 41.8%25 identity in 213 aa overlap and Mycobacterium tuberculosis RV2925C SW:RNC_MYCTU (Q10962) (240 aa)%3B Fasta score E(): 0%2C 86.8%25 identity in 235 aa overlap. Contains Pfam match to entry PF00035 dsrm%2C Double-stranded RNA binding motif. Contains Pfam match to entry PF00636 Ribonuclease_3%2C RNase3 domain.. Contains PS00517 Ribonuclease III family signature.;gbkey=CDS;gene=rnc;product=RNAse III;protein_id=CAC30612.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2000930	2001127	.	-	.	ID=id-rnc;Note=Pfam match to entry PF00035 dsrm%2C Double-stranded RNA binding motif%2C score 84.20%2C E-value 2.7e-21;gbkey=misc_feature;gene=rnc
AL450380.1	EMBL	sequence_feature	2001209	2001490	.	-	.	ID=id-rnc-2;Note=Pfam match to entry PF00636 Ribonuclease_3%2C RNase3 domain.%2C score 155.60%2C E-value 8.2e-43;gbkey=misc_feature;gene=rnc
AL450380.1	EMBL	sequence_feature	2001464	2001490	.	-	.	ID=id-rnc-3;Note=PS00517 Ribonuclease III family signature;gbkey=misc_feature;gene=rnc
AL450380.1	EMBL	gene	2001607	2002260	.	-	.	ID=gene-ML1660;Name=ML1660;gbkey=Gene;gene=ML1660;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2001607	2002260	.	-	0	ID=cds-CAC30613.1;Parent=gene-ML1660;Dbxref=InterPro:IPR003772,NCBI_GP:CAC30613.1;Name=CAC30613.1;Note=Similar to several proteins of undefined function e.g. Mycobacterium tuberculosis RV2926C TR:YT26_MYCTU.;gbkey=CDS;gene=ML1660;product=conserved hypothetical protein;protein_id=CAC30613.1;transl_table=11
AL450380.1	EMBL	gene	2002294	2003037	.	-	.	ID=gene-ML1661;Name=ML1661;gbkey=Gene;gene=ML1661;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2002294	2003037	.	-	0	ID=cds-CAC30614.1;Parent=gene-ML1661;Dbxref=NCBI_GP:CAC30614.1;Name=CAC30614.1;Note=Similar to several proteins of undefined function e.g. Mycobacterium tuberculosis RV2927C TR:YT27_MYCTU.;gbkey=CDS;gene=ML1661;product=conserved hypothetical protein;protein_id=CAC30614.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	2003040	2003045	.	-	.	ID=id-AL450380.1:2003040..2003045;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	2003267	2003847	.	+	.	ID=gene-ML1662;Name=ML1662;gbkey=Gene;gene=ML1662;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2003267	2003847	.	+	0	ID=cds-ML1662;Parent=gene-ML1662;Note=Possible pseudogene of M. tuberculosis orthologue Rv2963 (Best blastx score 136);gbkey=CDS;gene=ML1662;product=integral membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2003855	2005033	.	+	.	ID=id-AL450380.1:2003855..2005033;Note=1179 bp 100%25 identical to region 545582..544404;gbkey=repeat_region
AL450380.1	EMBL	gene	2005132	2005605	.	-	.	ID=gene-coaD;Name=coaD;gbkey=Gene;gene=coaD;gene_biotype=protein_coding;gene_synonym=ML1663
AL450380.1	EMBL	CDS	2005132	2005605	.	-	0	ID=cds-CAC30616.1;Parent=gene-coaD;Dbxref=GOA:O69466,InterPro:IPR001980,InterPro:IPR004821,InterPro:IPR014729,NCBI_GP:CAC30616.1;Name=CAC30616.1;Note=Highly similar to many phosphopantetheine adenylyltransferases (EC 2.7.7.3) involved in coenzyme A biosynthesis%2C including: Escherichia coli SW:COAD_ECOLI (P23875) (159 aa)%3B Fasta score E(): 5.9e-25%2C 43.5%25 identity in 154 aa overlap and Mycobacterium tuberculosis RV2965C SW:COAD_MYCTU (Q50452) (161 aa)%3B Fasta score E(): 0%2C 85.6%25 identity in 153 aa overlap. Contains Pfam match to entry PF01467 Cytidylyltransf%2C Cytidylyltransferase.;gbkey=CDS;gene=coaD;product=probable phosphopantetheine adenylyltransferase;protein_id=CAC30616.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2005207	2005602	.	-	.	ID=id-coaD;Note=Pfam match to entry PF01467 Cytidylyltransf%2C Cytidylyltransferase%2C score 157.90%2C E-value 1.7e-43;gbkey=misc_feature;gene=coaD
AL450380.1	EMBL	gene	2005637	2006110	.	-	.	ID=gene-ML1664;Name=ML1664;gbkey=Gene;gene=ML1664;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2005637	2006110	.	-	0	ID=cds-CAC30617.1;Parent=gene-ML1664;Dbxref=GOA:Q9CBS5,InterPro:IPR004398,InterPro:IPR029063,UniProtKB/TrEMBL:Q9CBS5,NCBI_GP:CAC30617.1;Name=CAC30617.1;Note=Similar to several proteins of undefined function including: Neisseria meningitidis possible DNA methylase TR:CAB83466 (EMBL:AL162752) (189 aa)%3B Fasta score E(): 3.6e-07%2C 39.6%25 identity in 96 aa overlap and Mycobacterium tuberculosis Rv2966c TR:P95128 (EMBL:Z83018) (188 aa)%3B Fasta score E(): 0%2C 72.9%25 identity in 155 aa overlap. Contains PS00092 N-6 Adenine-specific DNA methylases signature.;gbkey=CDS;gene=ML1664;product=conserved hypothetical protein;protein_id=CAC30617.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2005826	2005846	.	-	.	ID=id-ML1664;Note=PS00092 N-6 Adenine-specific DNA methylases signature;gbkey=misc_feature;gene=ML1664
AL450380.1	EMBL	pseudogene	2006191	2009575	.	-	.	ID=gene-pca;Name=pca;gbkey=Gene;gene=pca;gene_biotype=pseudogene;gene_synonym=ML1665;pseudo=true
AL450380.1	EMBL	CDS	2006191	2009575	.	-	0	ID=cds-pca;Parent=gene-pca;Note=Possible pseudogene of M. tuberculosis orthologue pca (Best blastx score 873);gbkey=CDS;gene=pca;product=pyruvate carboxylase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2009601	2010245	.	-	.	ID=gene-ML1666;Name=ML1666;gbkey=Gene;gene=ML1666;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2009601	2010245	.	-	0	ID=cds-CAC30619.1;Parent=gene-ML1666;Dbxref=InterPro:IPR012932,UniProtKB/TrEMBL:Q7AQ31,NCBI_GP:CAC30619.1;Name=CAC30619.1;Note=Similar to several proteins of undefined function including: Streptomyces coelicolorputative integral membrane protein TR:CAB93387 (EMBL:AL357523) (240 aa)%3B Fasta score E(): 3.6e-25%2C 36.1%25 identity in 191 aa overlap and Mycobacterium tuberculosis Rv2968c TR:P95126 (EMBL:Z83018) (210 aa)%3B Fasta score E(): 0%2C 72.4%25 identity in 214 aa overlap. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1666;product=conserved integral membrane protein;protein_id=CAC30619.1;transl_table=11
AL450380.1	EMBL	gene	2010254	2011048	.	-	.	ID=gene-ML1667;Name=ML1667;gbkey=Gene;gene=ML1667;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2010254	2011048	.	-	0	ID=cds-CAC30620.1;Parent=gene-ML1667;Dbxref=InterPro:IPR012336,UniProtKB/TrEMBL:Q9CBS4,NCBI_GP:CAC30620.1;Name=CAC30620.1;Note=Similar to several proteins of undefined function e.g. Mycobacterium tuberculosis RV2969C TR:O33272 (EMBL:Z83018) (255 aa)%3B Fasta score E(): 0%2C 65.5%25 identity in 258 aa overlap. Contains a possible membrane spanning hydrophobic domain.;gbkey=CDS;gene=ML1667;product=possible conserved membrane protein;protein_id=CAC30620.1;transl_table=11
AL450380.1	EMBL	pseudogene	2011292	2012074	.	-	.	ID=gene-lipN;Name=lipN;gbkey=Gene;gene=lipN;gene_biotype=pseudogene;gene_synonym=ML1668;pseudo=true
AL450380.1	EMBL	CDS	2011292	2012074	.	-	0	ID=cds-lipN;Parent=gene-lipN;Note=Possible pseudogene of M. tuberculosis orthologue lipN (Best blastx score 135);gbkey=CDS;gene=lipN;product=probable lipase/esterase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2013056	2013904	.	+	.	ID=gene-ML1669;Name=ML1669;gbkey=Gene;gene=ML1669;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2013056	2013904	.	+	0	ID=cds-CAC30622.1;Parent=gene-ML1669;Dbxref=GOA:O69462,InterPro:IPR001395,InterPro:IPR018170,InterPro:IPR020471,InterPro:IPR023210,NCBI_GP:CAC30622.1;Name=CAC30622.1;Note=Highly similar to many putative oxidoreductases including: Escherichia coli SW:YQHE_ECOLI (Q46857) (275 aa)%3B Fasta score E(): 0%2C 46.1%25 identity in 271 aa overlap and Mycobacterium tuberculosis RV2971 TR:P95124 (EMBL:Z83018) (282 aa)%3B Fasta score E(): 0%2C 79.8%25 identity in 282 aa overlap. Contains Pfam match to entry PF00248 aldo_ket_red%2C Aldo/keto reductase family. Contains PS00062 Aldo/keto reductase family signature 2.;gbkey=CDS;gene=ML1669;product=possible oxidoreductase of Aldo/keto reductase family;protein_id=CAC30622.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2013098	2013868	.	+	.	ID=id-ML1669;Note=Pfam match to entry PF00248 aldo_ket_red%2C Aldo/keto reductase family%2C score 448.60%2C E-value 5.4e-131;gbkey=misc_feature;gene=ML1669
AL450380.1	EMBL	sequence_feature	2013446	2013499	.	+	.	ID=id-ML1669-2;Note=PS00062 Aldo/keto reductase family signature 2;gbkey=misc_feature;gene=ML1669
AL450380.1	EMBL	pseudogene	2013975	2014632	.	-	.	ID=gene-ML1670;Name=ML1670;gbkey=Gene;gene=ML1670;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2013975	2014632	.	-	0	ID=cds-ML1670;Parent=gene-ML1670;Note=Possible pseudogene of M. tuberculosis orthologue Rv2972c (Best blastx score 445);gbkey=CDS;gene=ML1670;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2014723	2016954	.	-	.	ID=gene-recG;Name=recG;gbkey=Gene;gene=recG;gene_biotype=protein_coding;gene_synonym=ML1671
AL450380.1	EMBL	CDS	2014723	2016954	.	-	0	ID=cds-CAC30624.1;Parent=gene-recG;Dbxref=GOA:O69460,InterPro:IPR001650,InterPro:IPR004609,InterPro:IPR011545,InterPro:IPR012340,InterPro:IPR014001,InterPro:IPR027417,NCBI_GP:CAC30624.1;Name=CAC30624.1;Note=Highly similar to many ATP-dependent DNA helicases including: Staphylococcus aureus SW:RECG_STAAU (O50581) (686 aa)%3B Fasta score E(): 2e-24%2C 35.7%25 identity in 701 aa overlap and Mycobacterium tuberculosis RV2973C SW:RECG_MYCTU (P95122) (737 aa)%3B Fasta score E(): 0%2C 79.4%25 identity in 744 aa overlap. Contains Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain. Contains Pfam match to entry PF00270 DEAD%2C DEAD/DEAH box helicase. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=recG;product=ATP-dependent DNA helicase;protein_id=CAC30624.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2015065	2015322	.	-	.	ID=id-recG;Note=Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain%2C score 65.00%2C E-value 1.5e-15;gbkey=misc_feature;gene=recG
AL450380.1	EMBL	sequence_feature	2015434	2016123	.	-	.	ID=id-recG-2;Note=Pfam match to entry PF00270 DEAD%2C DEAD/DEAH box helicase%2C score 102.20%2C E-value 2.2e-31;gbkey=misc_feature;gene=recG
AL450380.1	EMBL	sequence_feature	2015989	2016012	.	-	.	ID=id-recG-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=recG
AL450380.1	EMBL	pseudogene	2016960	2018391	.	-	.	ID=gene-ML1672;Name=ML1672;gbkey=Gene;gene=ML1672;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2016960	2018391	.	-	0	ID=cds-ML1672;Parent=gene-ML1672;Note=Possible pseudogene of M. tuberculosis orthologue Rv2974c (Best blastx score 719);gbkey=CDS;gene=ML1672;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2018442	2018642	.	-	.	ID=gene-ML1673;Name=ML1673;gbkey=Gene;gene=ML1673;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2018442	2018642	.	-	0	ID=cds-ML1673;Parent=gene-ML1673;Note=Possible pseudogene of M. tuberculosis orthologue Rv2975c (Best blastx score 88);gbkey=CDS;gene=ML1673;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2018906	2019172	.	+	.	ID=gene-rpmB;Name=rpmB;gbkey=Gene;gene=rpmB;gene_biotype=pseudogene;gene_synonym=ML1674;pseudo=true
AL450380.1	EMBL	CDS	2018906	2019172	.	+	0	ID=cds-rpmB;Parent=gene-rpmB;Note=Possible pseudogene of M. tuberculosis orthologue rpmB (Best blastx score 125);gbkey=CDS;gene=rpmB;product=50S ribosomal protein L28 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2019277	2019960	.	-	.	ID=gene-ung;Name=ung;gbkey=Gene;gene=ung;gene_biotype=protein_coding;gene_synonym=ML1675
AL450380.1	EMBL	CDS	2019277	2019960	.	-	0	ID=cds-CAC30628.1;Parent=gene-ung;Dbxref=GOA:Q9CBS3,InterPro:IPR002043,InterPro:IPR005122,InterPro:IPR018085,NCBI_GP:CAC30628.1;Name=CAC30628.1;Note=Highly similar to many uracil-DNA glycosylases including: Streptococcus pneumoniae SW:UNG_STRPN (P23379) (123 aa)%3B BlastP Expect 8.6 and Mycobacterium tuberculosis SW:UNG_MYCTU (P95119) (227 aa)%3B Fasta score E(): 0%2C 88.5%25 identity in 227 aa overlap. Contains Pfam match to entry PF00315 UNG%2C Uracil-DNA glycosylase. Contains PS00130 Uracil-DNA glycosylase signature.;gbkey=CDS;gene=ung;product=uracil-DNA glycosylase;protein_id=CAC30628.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2019289	2019831	.	-	.	ID=id-ung;Note=Pfam match to entry PF00315 UNG%2C Uracil-DNA glycosylase%2C score 210.30%2C E-value 2.8e-59;gbkey=misc_feature;gene=ung
AL450380.1	EMBL	sequence_feature	2019751	2019780	.	-	.	ID=id-ung-2;Note=PS00130 Uracil-DNA glycosylase signature;gbkey=misc_feature;gene=ung
AL450380.1	EMBL	gene	2020074	2021051	.	-	.	ID=gene-thiL;Name=thiL;gbkey=Gene;gene=thiL;gene_biotype=protein_coding;gene_synonym=ML1676
AL450380.1	EMBL	CDS	2020074	2021051	.	-	0	ID=cds-CAC30629.1;Parent=gene-thiL;Dbxref=GOA:Q9CBS2,InterPro:IPR000728,InterPro:IPR006283,InterPro:IPR010918,InterPro:IPR016188,UniProtKB/TrEMBL:Q9CBS2,NCBI_GP:CAC30629.1;Name=CAC30629.1;Note=Similar to several thiamine-monophosphate kinases (EC 2.7.4.16) including: Escherichia coli SW:THIL_ECOLI (P77785) (325 aa)%3B Fasta score E(): 1.1e-18%2C 35.3%25 identity in 278 aa overlap and Mycobacterium tuberculosis RV2977C TR:P95118 (P95118) (333 aa)%3B Fasta score E(): 0%2C 80.9%25 identity in 314 aa overlap. Contains Pfam match to entry PF00586 AIRS%2C AIR synthase related protein.;gbkey=CDS;gene=thiL;product=probable thiamine-monophosphate kinase;protein_id=CAC30629.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2020146	2020994	.	-	.	ID=id-thiL;Note=Pfam match to entry PF00586 AIRS%2C AIR synthase related protein%2C score -13.40%2C E-value 5.4e-06;gbkey=misc_feature;gene=thiL
AL450380.1	EMBL	gene	2021235	2021810	.	+	.	ID=gene-ML1677;Name=ML1677;gbkey=Gene;gene=ML1677;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2021235	2021810	.	+	0	ID=cds-CAC30630.1;Parent=gene-ML1677;Dbxref=InterPro:IPR021903,UniProtKB/TrEMBL:Q9CBS1,NCBI_GP:CAC30630.1;Name=CAC30630.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein Rv2980 TR:P95115 (EMBL:Z83018) (181 aa)%3B Fasta score E(): 0%2C 67.2%25 identity in 177 aa overlap. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=ML1677;product=possible secreted protein;protein_id=CAC30630.1;transl_table=11
AL450380.1	EMBL	gene	2021819	2022973	.	-	.	ID=gene-ddlA;Name=ddlA;gbkey=Gene;gene=ddlA;gene_biotype=protein_coding;gene_synonym=ML1678
AL450380.1	EMBL	CDS	2021819	2022973	.	-	0	ID=cds-CAC30631.1;Parent=gene-ddlA;Dbxref=GOA:Q9CBS0,InterPro:IPR000291,InterPro:IPR005905,InterPro:IPR011095,InterPro:IPR011127,InterPro:IPR011761,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,NCBI_GP:CAC30631.1;Name=CAC30631.1;Note=Highly similar to D-alanine--D-alanine ligase A (EC 6.3.2.4) from many including: Salmonella typhimurium SW:DDLA_SALTY (P15051) (363 aa)%3B Fasta score E(): 0%2C 43.5%25 identity in 368 aa overlap and Mycobacterium tuberculosis SW:DDL_MYCTU (P95114) (373 aa)%3B Fasta score E(): 0%2C 81.7%25 identity in 367 aa overlap. Contains Pfam match to entry PF01820 Dala_Dala_ligas%2C D-ala D-ala ligase. Contains PS00844 D-alanine--D-alanine ligase signature 2. Contains PS00843 D-alanine--D-alanine ligase signature 1.;gbkey=CDS;gene=ddlA;product=D-alanine-D-alanine ligase A;protein_id=CAC30631.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2021852	2022922	.	-	.	ID=id-ddlA;Note=Pfam match to entry PF01820 Dala_Dala_ligas%2C D-ala D-ala ligase%2C score 565.30%2C E-value 3.9e-166;gbkey=misc_feature;gene=ddlA
AL450380.1	EMBL	sequence_feature	2021933	2022016	.	-	.	ID=id-ddlA-2;Note=PS00844 D-alanine--D-alanine ligase signature 2;gbkey=misc_feature;gene=ddlA
AL450380.1	EMBL	sequence_feature	2022554	2022589	.	-	.	ID=id-ddlA-3;Note=PS00843 D-alanine--D-alanine ligase signature 1;gbkey=misc_feature;gene=ddlA
AL450380.1	EMBL	gene	2023085	2024140	.	-	.	ID=gene-gpdA;Name=gpdA;gbkey=Gene;gene=gpdA;gene_biotype=protein_coding;gene_synonym=ML1679
AL450380.1	EMBL	CDS	2023085	2024140	.	-	0	ID=cds-CAC30632.1;Parent=gene-gpdA;Dbxref=GOA:Q9CBR9,InterPro:IPR006109,InterPro:IPR006168,InterPro:IPR008927,InterPro:IPR011128,InterPro:IPR013328,InterPro:IPR016040,NCBI_GP:CAC30632.1;Name=CAC30632.1;Note=Highly similar to many glycerol-3-phosphate dehydrogenases (EC 1.1.1.8) including: Escherichia coli SW:GPDA_ECOLI (P37606) (339 aa)%3B Fasta score E(): 0%2C 39.9%25 identity in 341 aa overlap and Mycobacterium tuberculosis RV2982C TR:P95113 (EMBL:Z83018) (334 aa)%3B Fasta score E(): 0%2C 77.9%25 identity in 349 aa overlap. Contains Pfam match to entry PF01210 NAD_Gly3P_dh%2C NAD-dependent glycerol-3-phosphate dehydrogenase.;gbkey=CDS;gene=gpdA;product=glycerol-3-phosphate dehydrogenase;protein_id=CAC30632.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2023112	2024113	.	-	.	ID=id-gpdA;Note=Pfam match to entry PF01210 NAD_Gly3P_dh%2C NAD-dependent glycerol-3-phosphate dehydrogenase%2C score 273.70%2C E-value 2.5e-78;gbkey=misc_feature;gene=gpdA
AL450380.1	EMBL	gene	2024681	2025331	.	+	.	ID=gene-ML1680;Name=ML1680;gbkey=Gene;gene=ML1680;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2024681	2025331	.	+	0	ID=cds-CAC30633.1;Parent=gene-ML1680;Dbxref=GOA:O33128,InterPro:IPR002835,InterPro:IPR029044,NCBI_GP:CAC30633.1;Name=CAC30633.1;Note=Highly similar to several proteins of undefined function including: Mycobacterium tuberculosis RV2983 TR:P95112 (EMBL:Z83018) (214 aa)%3B Fasta score E(): 0%2C 79.1%25 identity in 215 aa overlap and Streptomyces coelicolor TR:Q9ZBS2 (EMBL:AL034447) (212 aa)%3B Fasta score E(): 1.2e-17%2C 41.1%25 identity in 207 aa overlap. Contains Pfam match to entry PF01983 DUF121%2C Protein of unknown function.;gbkey=CDS;gene=ML1680;product=conserved hypothetical protein;protein_id=CAC30633.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2024714	2025328	.	+	.	ID=id-ML1680;Note=Pfam match to entry PF01983 DUF121%2C Protein of unknown function%2C score -39.30%2C E-value 0.00041;gbkey=misc_feature;gene=ML1680
AL450380.1	EMBL	gene	2025415	2027634	.	+	.	ID=gene-ML1681;Name=ML1681;gbkey=Gene;gene=ML1681;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2025415	2027634	.	+	0	ID=cds-CAC30634.1;Parent=gene-ML1681;Dbxref=GOA:O33127,InterPro:IPR003414,InterPro:IPR024953,InterPro:IPR025198,InterPro:IPR025200,NCBI_GP:CAC30634.1;Name=CAC30634.1;Note=Highly similar to many polyphosphate kinases (EC 2.7.4.1) including: Escherichia coli SW:PPK_ECOLI (P28688) (687 aa)%3B Fasta score E(): 0%2C 34.4%25 identity in 655 aa overlap and Mycobacterium tuberculosis RV2984 TR:P95111 (EMBL:Z83018) (742 aa)%3B Fasta score E(): 0%2C 87.9%25 identity in 742 aa overlap.;gbkey=CDS;gene=ML1681;product=possible polyphosphate kinase;protein_id=CAC30634.1;transl_table=11
AL450380.1	EMBL	gene	2027713	2028648	.	+	.	ID=gene-ML1682;Name=ML1682;gbkey=Gene;gene=ML1682;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2027713	2028648	.	+	0	ID=cds-CAC30635.1;Parent=gene-ML1682;Dbxref=GOA:Q9CBR8,InterPro:IPR000086,InterPro:IPR013078,InterPro:IPR015797,InterPro:IPR020084,InterPro:IPR029033,UniProtKB/TrEMBL:Q9CBR8,NCBI_GP:CAC30635.1;Name=CAC30635.1;Note=Similar to several proteins of undefined function e.g. Mycobacterium tuberculosis TR:P95110 (EMBL:Z83018) (317 aa)%3B Fasta score E(): 0%2C 71.5%25 identity in 316 aa overlap and Streptomyces coelicolor putative MutT-like protein TR:CAB88476 (EMBL:AL353816) (142 aa)%3B Fasta score E(): 2.6e-17%2C 47.7%25 identity in 128 aa overlap. Contains Pfam match to entry PF00293 mutT%2C Bacterial mutT protein. Contains PS00893 mutT domain signature.;gbkey=CDS;gene=ML1682;product=conserved hypothetical protein;protein_id=CAC30635.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2027815	2027931	.	+	.	ID=id-ML1682;Note=Pfam match to entry PF00293 mutT%2C Bacterial mutT protein%2C score 42.70%2C E-value 9.3e-11;gbkey=misc_feature;gene=ML1682
AL450380.1	EMBL	sequence_feature	2027863	2027922	.	+	.	ID=id-ML1682-2;Note=PS00893 mutT domain signature;gbkey=misc_feature;gene=ML1682
AL450380.1	EMBL	gene	2028717	2029319	.	-	.	ID=gene-ML1683;Name=ML1683;gbkey=Gene;gene=ML1683;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2028717	2029319	.	-	0	ID=cds-CAC30636.1;Parent=gene-ML1683;Dbxref=GOA:O33125,InterPro:IPR000119,InterPro:IPR010992,InterPro:IPR020816,NCBI_GP:CAC30636.1;Name=CAC30636.1;Note=The N-terminus of the predicted product of this CDS is highly similar to many bacterial histone-like DNA-binding proteins e.g. Bacillus stearothermophilus SW:DBH_BACST (P02346) (90 aa)%3B Fasta score E(): 2e-09%2C 48.3%25 identity in 89 aa overlap Similar over the whole range to Mycobacterial histone-like proteins e.g. Mycobacterium smegmatis TR:Q9ZHC5 (EMBL:AF068138) (269 aa)%3B BlastP Expect 0.0014 and Mycobacterium tuberculosis RV2986C SW:DBH_MYCTU (P95109) (214 aa)%3B Fasta score E(): 0%2C 80.1%25 identity in 216 aa overlap. Note that the C-terminus is rich in the amino acids Ala%2C Val and Lys. Contains Pfam match to entry PF00216 Bac_DNA_binding%2C Bacterial DNA-binding protein. Contains PS00045 Bacterial histone-like DNA-binding proteins signature.;gbkey=CDS;gene=ML1683;product=probable histone-like protein;protein_id=CAC30636.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2029050	2029319	.	-	.	ID=id-ML1683;Note=Pfam match to entry PF00216 Bac_DNA_binding%2C Bacterial DNA-binding protein%2C score 121.40%2C E-value 9.5e-34;gbkey=misc_feature;gene=ML1683
AL450380.1	EMBL	sequence_feature	2029125	2029184	.	-	.	ID=id-ML1683-2;Note=PS00045 Bacterial histone-like DNA-binding proteins signature;gbkey=misc_feature;gene=ML1683
AL450380.1	EMBL	ribosome_entry_site	2029326	2029330	.	-	.	ID=id-AL450380.1:2029326..2029330;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	2029533	2030129	.	-	.	ID=gene-leuD;Name=leuD;gbkey=Gene;gene=leuD;gene_biotype=protein_coding;gene_synonym=ML1684
AL450380.1	EMBL	CDS	2029533	2030129	.	-	0	ID=cds-CAC30637.1;Parent=gene-leuD;Dbxref=GOA:O33124,InterPro:IPR000573,InterPro:IPR004431,InterPro:IPR015928,InterPro:IPR015937,NCBI_GP:CAC30637.1;Name=CAC30637.1;Note=Highly similar to many 3-isopropylmalate dehydratase small subunits (EC 4.2.1.33) involved in leucine biosynthesis%2C including: Escherichia coli SW:LEUD_ECOLI (P30126) (201 aa)%3B Fasta score E(): 1.2e-28%2C 42.1%25 identity in 197 aa overlap and Mycobacterium tuberculosis RV2987C SW:LEUD_MYCTU (O53236) (198 aa)%3B Fasta score E(): 0%2C 87.8%25 identity in 196 aa overlap. Contains Pfam match to entry PF00694 Aconitase_C%2C Aconitase C-terminal domain.;gbkey=CDS;gene=leuD;product=3-isopropylmalate dehydratase small subunit;protein_id=CAC30637.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2029644	2030129	.	-	.	ID=id-leuD;Note=Pfam match to entry PF00694 Aconitase_C%2C Aconitase C-terminal domain%2C score 113.60%2C E-value 3.6e-30;gbkey=misc_feature;gene=leuD
AL450380.1	EMBL	ribosome_entry_site	2030137	2030141	.	-	.	ID=id-AL450380.1:2030137..2030141;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	2030172	2031629	.	-	.	ID=gene-leuC;Name=leuC;gbkey=Gene;gene=leuC;gene_biotype=protein_coding;gene_synonym=ML1685
AL450380.1	EMBL	CDS	2030172	2031629	.	-	0	ID=cds-CAC30638.1;Parent=gene-leuC;Dbxref=GOA:O33123,InterPro:IPR001030,InterPro:IPR004430,InterPro:IPR015931,InterPro:IPR015932,InterPro:IPR015937,InterPro:IPR018136,NCBI_GP:CAC30638.1;Name=CAC30638.1;Note=Highly similar to many 3-isopropylmalate dehydratase large subunits (EC 4.2.1.33) involved in leucine biosynthesis%2C including: Escherichia coli SW:LEU2_ECOLI (P30127) (465 aa)%3B Fasta score E(): 0%2C 61.3%25 identity in 463 aa overlap and Mycobacterium tuberculosis RV2988C SW:LEU2_MYCTU (O53237) (473 aa)%3B Fasta score E(): 0%2C 88.7%25 identity in 471 aa overlap. Contains Pfam match to entry PF00330 aconitase%2C Aconitase family (aconitate hydratase). Contains PS01244 Aconitase family signature 2. Contains PS00450 Aconitase family signature 1.;gbkey=CDS;gene=leuC;product=3-isopropylmalate dehydratase large subunit;protein_id=CAC30638.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2030202	2031578	.	-	.	ID=id-leuC;Note=Pfam match to entry PF00330 aconitase%2C Aconitase family (aconitate hydratase)%2C score 754.90%2C E-value 3.9e-230;gbkey=misc_feature;gene=leuC
AL450380.1	EMBL	sequence_feature	2030337	2030378	.	-	.	ID=id-leuC-2;Note=PS01244 Aconitase family signature 2;gbkey=misc_feature;gene=leuC
AL450380.1	EMBL	sequence_feature	2030508	2030558	.	-	.	ID=id-leuC-3;Note=PS00450 Aconitase family signature 1;gbkey=misc_feature;gene=leuC
AL450380.1	EMBL	pseudogene	2031707	2032414	.	+	.	ID=gene-ML1686;Name=ML1686;gbkey=Gene;gene=ML1686;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2031707	2032414	.	+	0	ID=cds-ML1686;Parent=gene-ML1686;Note=Possible pseudogene of M. tuberculosis orthologue Rv2989 (Best blastx score 788);gbkey=CDS;gene=ML1686;product=transcriptional regulator (IclR family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2032699	2032830	.	+	.	ID=gene-ML1687;Name=ML1687;gbkey=Gene;gene=ML1687;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2032699	2032830	.	+	0	ID=cds-ML1687;Parent=gene-ML1687;Note=Possible pseudogene of M. tuberculosis orthologue Rv2991;gbkey=CDS;gene=ML1687;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2033106	2033181	.	-	.	ID=gene-gluU;Name=gluU;gbkey=Gene;gene=gluU;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	2033106	2033181	.	-	.	ID=rna-gluU;Parent=gene-gluU;Note=tRNA Glu anticodon CTC%2C Cove score 62.17;gbkey=tRNA;gene=gluU;product=tRNA-Glu
AL450380.1	EMBL	exon	2033106	2033181	.	-	.	ID=exon-gluU-1;Parent=rna-gluU;Note=tRNA Glu anticodon CTC%2C Cove score 62.17;gbkey=tRNA;gene=gluU;product=tRNA-Glu
AL450380.1	EMBL	gene	2033269	2033343	.	-	.	ID=gene-glnU;Name=glnU;gbkey=Gene;gene=glnU;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	2033269	2033343	.	-	.	ID=rna-glnU;Parent=gene-glnU;Note=tRNA Gln anticodon CTG%2C Cove score 56.59;gbkey=tRNA;gene=glnU;product=tRNA-Gln
AL450380.1	EMBL	exon	2033269	2033343	.	-	.	ID=exon-glnU-1;Parent=rna-glnU;Note=tRNA Gln anticodon CTG%2C Cove score 56.59;gbkey=tRNA;gene=glnU;product=tRNA-Gln
AL450380.1	EMBL	gene	2033584	2035092	.	-	.	ID=gene-gltS;Name=gltS;gbkey=Gene;gene=gltS;gene_biotype=protein_coding;gene_synonym=ML1688
AL450380.1	EMBL	CDS	2033584	2035092	.	-	0	ID=cds-CAC30641.1;Parent=gene-gltS;Dbxref=GOA:O33120,InterPro:IPR000924,InterPro:IPR004527,InterPro:IPR008925,InterPro:IPR014729,InterPro:IPR020058,InterPro:IPR020061,InterPro:IPR020751,NCBI_GP:CAC30641.1;Name=CAC30641.1;Note=Highly similar to many glutamyl-tRNA synthetases (EC 6.1.1.17) including: Bacillus subtilis SW:SYE_BACSU (P22250) (483 aa)%3B Fasta score E(): 0%2C 37.4%25 identity in 486 aa overlap and Mycobacterium tuberculosis RV2992C SW:SYE_MYCTU (O53241) (490 aa)%3B Fasta score E(): 0%2C 81.4%25 identity in 488 aa overlap. Contains Pfam match to entry PF00749 tRNA-synt_1c%2C tRNA synthetases class I (E and Q).;gbkey=CDS;gene=gltS;product=glutamyl-tRNA synthase;protein_id=CAC30641.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2033605	2035053	.	-	.	ID=id-gltS;Note=Pfam match to entry PF00749 tRNA-synt_1c%2C tRNA synthetases class I (E and Q)%2C score 379.80%2C E-value 2.7e-110;gbkey=misc_feature;gene=gltS
AL450380.1	EMBL	gene	2035089	2035817	.	-	.	ID=gene-ML1689;Name=ML1689;gbkey=Gene;gene=ML1689;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2035089	2035817	.	-	0	ID=cds-CAC30642.1;Parent=gene-ML1689;Dbxref=GOA:Q7AQ28,InterPro:IPR002529,InterPro:IPR011234,InterPro:IPR018833,UniProtKB/TrEMBL:Q7AQ28,NCBI_GP:CAC30642.1;Name=CAC30642.1;Note=Similar in parts to several putative 2-hydroxyhepta-2%2C4-diene-1%2C7-dioate isomerases including: Methanobacterium thermoautotrophicum TR:O27551 (EMBL:AE000911) (260 aa)%3B Fasta score E(): 0%2C 51.9%25 identity in 216 aa overlap and Mycobacterium tuberculosis RV2993C TR:O53242 (EMBL:AL021287) (239 aa)%3B Fasta score E(): 0%2C 85.9%25 identity in 241 aa overlap. Contains Pfam match to entry PF01557 FAA_hydrolase%2C Fumarylacetoacetate (FAA) hydrolase family.;gbkey=CDS;gene=ML1689;product=possible hydrolase;protein_id=CAC30642.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2035164	2035667	.	-	.	ID=id-ML1689;Note=Pfam match to entry PF01557 FAA_hydrolase%2C Fumarylacetoacetate (FAA) hydrolase family%2C score 338.60%2C E-value 6.8e-98;gbkey=misc_feature;gene=ML1689
AL450380.1	EMBL	pseudogene	2035998	2037300	.	+	.	ID=gene-ML1690;Name=ML1690;gbkey=Gene;gene=ML1690;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2035998	2037300	.	+	0	ID=cds-ML1690;Parent=gene-ML1690;Note=Possible pseudogene of M. tuberculosis orthologue Rv2994 (Best blastx score 382);gbkey=CDS;gene=ML1690;product=probable fluoroquinolone efflux protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2037155	2038165	.	-	.	ID=gene-leuB;Name=leuB;gbkey=Gene;gene=leuB;gene_biotype=protein_coding;gene_synonym=ML1691
AL450380.1	EMBL	CDS	2037155	2038165	.	-	0	ID=cds-CAC30644.1;Parent=gene-leuB;Dbxref=GOA:O33117,InterPro:IPR001804,InterPro:IPR019818,InterPro:IPR023698,InterPro:IPR024084,NCBI_GP:CAC30644.1;Name=CAC30644.1;Note=Highly similar to 3-isopropylmalate dehydrogenases (EC 1.1.1.85)%2C involved in leucine biosynthesis%2C from Mycobacterium bovis SW:LEU3_MYCBO (P94929) (336 aa)%3B Fasta score E(): 0%2C 83.9%25 identity in 336 aa overlap and Mycobacterium tuberculosis RV2995C SW:LEU3_MYCTU (P95313) (336 aa)%3B Fasta score E(): 0%2C 83.9%25 identity in 336 aa overlap. Contains Pfam match to entry PF00180 isodh%2C Isocitrate and isopropylmalate dehydrogenases.;gbkey=CDS;gene=leuB;product=3-isopropylmalate dehydrogenase;protein_id=CAC30644.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2037170	2038162	.	-	.	ID=id-leuB;Note=Pfam match to entry PF00180 isodh%2C Isocitrate and isopropylmalate dehydrogenases%2C score 298.90%2C E-value 1.6e-88;gbkey=misc_feature;gene=leuB
AL450380.1	EMBL	gene	2038215	2039801	.	-	.	ID=gene-serA;Name=serA;gbkey=Gene;gene=serA;gene_biotype=protein_coding;gene_synonym=ML1692
AL450380.1	EMBL	CDS	2038215	2039801	.	-	0	ID=cds-CAC30645.1;Parent=gene-serA;Dbxref=GOA:O33116,InterPro:IPR002912,InterPro:IPR006139,InterPro:IPR006140,InterPro:IPR006236,InterPro:IPR016040,InterPro:IPR029009,InterPro:IPR029752,InterPro:IPR029753,NCBI_GP:CAC30645.1;Name=CAC30645.1;Note=Highly similar to many D-3-phosphoglycerate dehydrogenases (EC 1.1.1.95) involved in serine biosynthesis including: Bacillus subtilis SW:SERA_BACSU (P35136) (525 aa)%3B Fasta score E(): 0%2C 36.1%25 identity in 527 aa overlap and Mycobacterium tuberculosis RV2996C SW:SERA_MYCTU (O53243) (528 aa)%3B Fasta score E(): 0%2C 89.6%25 identity in 528 aa overlap. Contains Pfam match to entry PF00389 2-Hacid_DH%2C D-isomer specific 2-hydroxyacid dehydrogenases. Contains Pfam match to entry PF01842 ACT%2C ACT domain. Contains PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. Contains PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3.;gbkey=CDS;gene=serA;product=D-3-phosphoglycerate dehydrogenase;protein_id=CAC30645.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2038221	2038442	.	-	.	ID=id-serA;Note=Pfam match to entry PF01842 ACT%2C ACT domain%2C score 44.00%2C E-value 3.4e-09;gbkey=misc_feature;gene=serA
AL450380.1	EMBL	sequence_feature	2038965	2039579	.	-	.	ID=id-serA-2;Note=Pfam match to entry PF00389 2-Hacid_DH%2C D-isomer specific 2-hydroxyacid dehydrogenases%2C score 257.90%2C E-value 2.7e-105;gbkey=misc_feature;gene=serA
AL450380.1	EMBL	sequence_feature	2039091	2039141	.	-	.	ID=id-serA-3;Note=PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3;gbkey=misc_feature;gene=serA
AL450380.1	EMBL	sequence_feature	2039160	2039228	.	-	.	ID=id-serA-4;Note=PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2;gbkey=misc_feature;gene=serA
AL450380.1	EMBL	sequence_feature	2039289	2039372	.	-	.	ID=id-serA-5;Note=PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature;gbkey=misc_feature;gene=serA
AL450380.1	EMBL	sequence_feature	2039373	2039396	.	-	.	ID=id-serA-6;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=serA
AL450380.1	EMBL	pseudogene	2039922	2041166	.	+	.	ID=gene-ML1693;Name=ML1693;gbkey=Gene;gene=ML1693;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2039922	2041166	.	+	0	ID=cds-ML1693;Parent=gene-ML1693;Note=Possible pseudogene of M. tuberculosis orthologue Rv2997 (Best blastx score 314);gbkey=CDS;gene=ML1693;product=putative dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2041727	2042740	.	+	.	ID=id-AL450380.1:2041727..2042740;Note=REPLEP region 11%2C 5-end most similar to REPLEP 2%2C 5 and 6%3B 3'-end most similar to REPLEP 2;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	2041795	2042674	.	+	.	ID=id-AL450380.1:2041795..2042674;Note=Dispersed repeat%2C REPLEP%2C copy 11;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	2042675	2042702	.	+	.	ID=id-AL450380.1:2042675..2042702;Note=28 bp subsequence of 45 bp REPLEP-associated sequence;gbkey=repeat_region
AL450380.1	EMBL	gene	2042720	2043721	.	-	.	ID=gene-ilvC;Name=ilvC;gbkey=Gene;gene=ilvC;gene_biotype=protein_coding;gene_synonym=ML1694
AL450380.1	EMBL	CDS	2042720	2043721	.	-	0	ID=cds-CAC30647.1;Parent=gene-ilvC;Dbxref=GOA:O33114,InterPro:IPR000506,InterPro:IPR008927,InterPro:IPR013023,InterPro:IPR013116,InterPro:IPR013328,NCBI_GP:CAC30647.1;Name=CAC30647.1;Note=Highly similar to many ketol-acid reductoisomerases (EC 1.1.1.86) involved in valine and isoleucine biosynthesis%2C including: Mycobacterium avium SW:ILVC_MYCAV (Q59500) (333 aa)%3B Fasta score E(): 0%2C 89.2%25 identity in 333 aa overlap and Mycobacterium tuberculosis RV3001C SW:ILVC_MYCTU (O53248) (333 aa)%3B Fasta score E(): 0%2C 86.2%25 identity in 333 aa overlap. Contains Pfam match to entry PF01450 IlvC%2C Acetohydroxy acid isomeroreductase.;gbkey=CDS;gene=ilvC;product=ketol-acid reductoisomerase;protein_id=CAC30647.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2042747	2043721	.	-	.	ID=id-ilvC;Note=Pfam match to entry PF01450 IlvC%2C Acetohydroxy acid isomeroreductase%2C score 716.00%2C E-value 1.8e-211;gbkey=misc_feature;gene=ilvC
AL450380.1	EMBL	gene	2043774	2044283	.	-	.	ID=gene-ilvN;Name=ilvN;gbkey=Gene;gene=ilvN;gene_biotype=protein_coding;gene_synonym=ML1695
AL450380.1	EMBL	CDS	2043774	2044283	.	-	0	ID=cds-CAC30648.1;Parent=gene-ilvN;Dbxref=GOA:O33113,InterPro:IPR002912,InterPro:IPR004789,InterPro:IPR019455,NCBI_GP:CAC30648.1;Name=CAC30648.1;Note=Highly similar to many acetolactate synthases%2C small subunit%2C (EC 4.1.3.18) involved in valine and isoleucine biosynthesis%2C including: Mycobacterium avium SW:ILVH_MYCAV (Q59499) (167 aa)%3B Fasta score E(): 0%2C 78.9%25 identity in 166 aa overlap and Mycobacterium tuberculosis RV3002C SW:ILVH_MYCTU (O53249) (168 aa)%3B Fasta score E(): 0%2C 83.5%25 identity in 164 aa overlap. Contains Pfam match to entry PF01842 ACT%2C ACT domain.;gbkey=CDS;gene=ilvN;product=acetolactate synthase I small subunit;protein_id=CAC30648.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2044044	2044265	.	-	.	ID=id-ilvN;Note=Pfam match to entry PF01842 ACT%2C ACT domain%2C score 79.90%2C E-value 5.2e-20;gbkey=misc_feature;gene=ilvN
AL450380.1	EMBL	gene	2044335	2046212	.	-	.	ID=gene-ilvB;Name=ilvB;gbkey=Gene;gene=ilvB;gene_biotype=protein_coding;gene_synonym=ML1696
AL450380.1	EMBL	CDS	2044335	2046212	.	-	0	ID=cds-CAC30649.1;Parent=gene-ilvB;Dbxref=GOA:O33112,InterPro:IPR000399,InterPro:IPR011766,InterPro:IPR012000,InterPro:IPR012001,InterPro:IPR012846,InterPro:IPR029035,InterPro:IPR029061,NCBI_GP:CAC30649.1;Name=CAC30649.1;Note=Highly similar to many acetolactate synthases%2C large subunit%2C (EC 4.1.3.18) involved in valine and isoleucine biosynthesis%2C including: Mycobacterium avium SW:ILVB_MYCAV (Q59498) (621 aa)%3B Fasta score E(): 0%2C 82.7%25 identity in 624 aa overlap and Mycobacterium tuberculosis RV3003C SW:ILVB_MYCTU (O53250) (618 aa)%3B Fasta score E(): 0%2C 87.1%25 identity in 627 aa overlap. Contains Pfam match to entry PF00205 TPP_enzymes%2C Thiamine pyrophosphate enzymes. Contains PS00187 Thiamine pyrophosphate enzymes signature.;gbkey=CDS;gene=ilvB;product=acetolactate synthase I large subunit;protein_id=CAC30649.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2044455	2046050	.	-	.	ID=id-ilvB;Note=Pfam match to entry PF00205 TPP_enzymes%2C Thiamine pyrophosphate enzymes%2C score 876.10%2C E-value 9.5e-272;gbkey=misc_feature;gene=ilvB
AL450380.1	EMBL	sequence_feature	2044746	2044805	.	-	.	ID=id-ilvB-2;Note=PS00187 Thiamine pyrophosphate enzymes signature;gbkey=misc_feature;gene=ilvB
AL450380.1	EMBL	pseudogene	2046579	2046943	.	+	.	ID=gene-ML1697;Name=ML1697;gbkey=Gene;gene=ML1697;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2046579	2046943	.	+	0	ID=cds-ML1697;Parent=gene-ML1697;Note=Possible pseudogene of M. tuberculosis orthologue Rv3004 (Best blastx score 93);gbkey=CDS;gene=ML1697;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2046984	2047817	.	-	.	ID=gene-ML1698;Name=ML1698;gbkey=Gene;gene=ML1698;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2046984	2047817	.	-	0	ID=cds-CAC30651.1;Parent=gene-ML1698;Dbxref=InterPro:IPR011637,UniProtKB/TrEMBL:Q7AQ27,NCBI_GP:CAC30651.1;Name=CAC30651.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein RV3005C TR:O53252 (EMBL:AL021287) (279 aa)%3B Fasta score E(): 0%2C 68.7%25 identity in 278 aa overlap. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1698;product=conserved membrane protein;protein_id=CAC30651.1;transl_table=11
AL450380.1	EMBL	gene	2048060	2049178	.	+	.	ID=gene-ML1699;Name=ML1699;gbkey=Gene;gene=ML1699;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2048060	2049178	.	+	0	ID=cds-CAC30652.1;Parent=gene-ML1699;Dbxref=GOA:Q7AQ26,InterPro:IPR011041,InterPro:IPR011042,InterPro:IPR012938,UniProtKB/TrEMBL:Q7AQ26,NCBI_GP:CAC30652.1;Name=CAC30652.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein RV3006 TR:O53253 (EMBL:AL021287) (373 aa)%3B Fasta score E(): 0%2C 87.1%25 identity in 373 aa overlap. Contains possible membrane spanning hydrophobic domains. ontains a possible N-terminal signal sequence and an appropriately positioned Prokaryotic membrane lipoprotein lipid attachment site. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=ML1699;product=putative lipoprotein;protein_id=CAC30652.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2048099	2048131	.	+	.	ID=id-ML1699;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=ML1699
AL450380.1	EMBL	gene	2050120	2051649	.	-	.	ID=gene-gatB;Name=gatB;gbkey=Gene;gene=gatB;gene_biotype=protein_coding;gene_synonym=ML1700
AL450380.1	EMBL	CDS	2050120	2051649	.	-	0	ID=cds-CAC30653.1;Parent=gene-gatB;Dbxref=GOA:O33107,InterPro:IPR003789,InterPro:IPR004413,InterPro:IPR006075,InterPro:IPR017958,InterPro:IPR017959,InterPro:IPR018027,NCBI_GP:CAC30653.1;Name=CAC30653.1;Note=Highly similar to many glutamyl-tRNA(Gln) amidotransferases (subunit B) including: Bacillus subtilis SW:GATB_BACSU (O30509) (269 aa)%3B BlastP Expect 8.6 and Mycobacterium tuberculosis SW:GATB_MYCTU (O53256) (509 aa)%3B Fasta score E(): 0%2C 88.4%25 identity in 509 aa overlap. Contains Pfam match to entry PF01162 PET112%2C PET112 family. Contains PS01234 PET112 family signature.;gbkey=CDS;gene=gatB;product=glutamyl-tRNA(Gln) amidotransferase%2C subunit B;protein_id=CAC30653.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2050126	2051394	.	-	.	ID=id-gatB;Note=Pfam match to entry PF01162 PET112%2C PET112 family%2C score 340.60%2C E-value 1.7e-98;gbkey=misc_feature;gene=gatB
AL450380.1	EMBL	sequence_feature	2051089	2051136	.	-	.	ID=id-gatB-2;Note=PS01234 PET112 family signature;gbkey=misc_feature;gene=gatB
AL450380.1	EMBL	ribosome_entry_site	2051658	2051661	.	-	.	ID=id-AL450380.1:2051658..2051661;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	2051998	2053029	.	-	.	ID=gene-pfkA;Name=pfkA;gbkey=Gene;gene=pfkA;gene_biotype=protein_coding;gene_synonym=ML1701
AL450380.1	EMBL	CDS	2051998	2053029	.	-	0	ID=cds-CAC30654.1;Parent=gene-pfkA;Dbxref=GOA:O33106,InterPro:IPR000023,InterPro:IPR012003,InterPro:IPR012829,InterPro:IPR015912,InterPro:IPR022953,NCBI_GP:CAC30654.1;Name=CAC30654.1;Note=Highly similar to many 6-phosphofructokinases (EC 2.7.1.11) including: Streptomyces coelicolor SW:K6PF_STRCO (O08333) (342 aa)%3B Fasta score E(): 0%2C 56.5%25 identity in 345 aa overlap and Mycobacterium tuberculosis RV3010C SW:K6PF_MYCTU (O53257) (343 aa)%3B Fasta score E(): 0%2C 90.4%25 identity in 343 aa overlap. Contains 2 Pfam matches to entry PF00365 PFK%2C Phosphofructokinase. Contains PS00433 Phosphofructokinase signature.;gbkey=CDS;gene=pfkA;product=6-phosphofructokinase;protein_id=CAC30654.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2052127	2052288	.	-	.	ID=id-pfkA;Note=Pfam match to entry PF00365 PFK%2C Phosphofructokinase%2C score 68.20%2C E-value 1.3e-24;gbkey=misc_feature;gene=pfkA
AL450380.1	EMBL	sequence_feature	2052175	2052231	.	-	.	ID=id-pfkA-2;Note=PS00433 Phosphofructokinase signature;gbkey=misc_feature;gene=pfkA
AL450380.1	EMBL	sequence_feature	2052355	2053026	.	-	.	ID=id-pfkA-3;Note=Pfam match to entry PF00365 PFK%2C Phosphofructokinase%2C score 234.30%2C E-value 1.9e-85;gbkey=misc_feature;gene=pfkA
AL450380.1	EMBL	gene	2053117	2054610	.	-	.	ID=gene-gatA;Name=gatA;gbkey=Gene;gene=gatA;gene_biotype=protein_coding;gene_synonym=ML1702
AL450380.1	EMBL	CDS	2053117	2054610	.	-	0	ID=cds-CAC30655.1;Parent=gene-gatA;Dbxref=GOA:O33105,InterPro:IPR000120,InterPro:IPR004412,InterPro:IPR020556,InterPro:IPR023631,NCBI_GP:CAC30655.1;Name=CAC30655.1;Note=Highly similar to many glutamyl-tRNA(Gln) amidotransferases (subunit A) including: Bacillus subtilis SW:GATA_BACSU (O06491) (485 aa)%3B Fasta score E(): 0%2C 50.8%25 identity in 476 aa overlap and Mycobacterium tuberculosis RV3011C SW:GATA_MYCTU (O53258) (494 aa)%3B Fasta score E(): 0%2C 88.5%25 identity in 494 aa overlap. Contains Pfam match to entry PF01425 Amidase%2C Amidase. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=gatA;product=glutamyl-tRNA(Gln) amidotransferase%2C subunit A;protein_id=CAC30655.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2053171	2054526	.	-	.	ID=id-gatA;Note=Pfam match to entry PF01425 Amidase%2C Amidase%2C score 658.70%2C E-value 3e-194;gbkey=misc_feature;gene=gatA
AL450380.1	EMBL	sequence_feature	2054227	2054250	.	-	.	ID=id-gatA-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=gatA
AL450380.1	EMBL	gene	2054607	2054906	.	-	.	ID=gene-gatC;Name=gatC;gbkey=Gene;gene=gatC;gene_biotype=protein_coding;gene_synonym=ML1703
AL450380.1	EMBL	CDS	2054607	2054906	.	-	0	ID=cds-CAC30656.1;Parent=gene-gatC;Dbxref=GOA:O33104,InterPro:IPR003837,NCBI_GP:CAC30656.1;Name=CAC30656.1;Note=Highly similar to many glutamyl-tRNA(Gln) amidotransferases (subunit C) including:Bacillus subtilis SW:GATC_BACSU (O06492) (96 aa)%3B Fasta score E(): 6.9e-08%2C 37.9%25 identity in 95 aa overlap and Mycobacterium tuberculosis RV3012C SW:GATC_MYCTU (O53259) (99 aa)%3B Fasta score E(): 3.1e-28%2C 74.7%25 identity in 99 aa overlap.;gbkey=CDS;gene=gatC;product=glutamyl-tRNA(Gln) amidotransferase%2C subunit C;protein_id=CAC30656.1;transl_table=11
AL450380.1	EMBL	gene	2055043	2055741	.	+	.	ID=gene-ML1704;Name=ML1704;gbkey=Gene;gene=ML1704;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2055043	2055741	.	+	0	ID=cds-CAC30657.1;Parent=gene-ML1704;Dbxref=GOA:Q9CBR7,InterPro:IPR002912,UniProtKB/TrEMBL:Q9CBR7,NCBI_GP:CAC30657.1;Name=CAC30657.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein RV3013 TR:O53260 (EMBL:AL021287) (218 aa)%3B Fasta score E(): 0%2C 84.3%25 identity in 216 aa overlap.;gbkey=CDS;gene=ML1704;product=conserved hypothetical protein;protein_id=CAC30657.1;transl_table=11
AL450380.1	EMBL	gene	2055744	2057828	.	-	.	ID=gene-ligA;Name=ligA;gbkey=Gene;gene=ligA;gene_biotype=protein_coding;gene_synonym=ML1705
AL450380.1	EMBL	CDS	2055744	2057828	.	-	0	ID=cds-CAC30658.1;Parent=gene-ligA;Dbxref=GOA:O33102,InterPro:IPR001357,InterPro:IPR001679,InterPro:IPR003583,InterPro:IPR004149,InterPro:IPR004150,InterPro:IPR010994,InterPro:IPR012340,InterPro:IPR013839,InterPro:IPR013840,InterPro:IPR018239,NCBI_GP:CAC30658.1;Name=CAC30658.1;Note=Highly similar to many DNA ligases (EC 6.5.1.2) essential for DNA replication and repair%2C including: DNLJ_ECOLI and Mycobacterium tuberculosis RV3014C SW:DNLJ_MYCTU (O53261) (691 aa)%3B Fasta score E(): 0%2C 84.7%25 identity in 687 aa overlap. Contains Pfam match to entry PF01653 DNA_ligase_N%2C NAD-dependent DNA ligase. Contains Pfam match to entry PF00533 BRCT%2C BRCA1 C Terminus (BRCT) domain. Contains PS01055 NAD-dependent DNA ligase signature 1.;gbkey=CDS;gene=ligA;product=DNA ligase;protein_id=CAC30658.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2055753	2056010	.	-	.	ID=id-ligA;Note=Pfam match to entry PF00533 BRCT%2C BRCA1 C Terminus (BRCT) domain%2C score 20.90%2C E-value 0.031;gbkey=misc_feature;gene=ligA
AL450380.1	EMBL	sequence_feature	2056452	2057798	.	-	.	ID=id-ligA-2;Note=Pfam match to entry PF01653 DNA_ligase_N%2C NAD-dependent DNA ligase%2C score 986.60%2C E-value 5.9e-293;gbkey=misc_feature;gene=ligA
AL450380.1	EMBL	sequence_feature	2057373	2057462	.	-	.	ID=id-ligA-3;Note=PS01055 NAD-dependent DNA ligase signature 1;gbkey=misc_feature;gene=ligA
AL450380.1	EMBL	gene	2057887	2058900	.	-	.	ID=gene-ML1706;Name=ML1706;gbkey=Gene;gene=ML1706;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2057887	2058900	.	-	0	ID=cds-CAC30659.1;Parent=gene-ML1706;Dbxref=GOA:Q9CBR6,InterPro:IPR002629,UniProtKB/TrEMBL:Q9CBR6,NCBI_GP:CAC30659.1;Name=CAC30659.1;Note=Highly similar to proteins of undefined function from Streptomyces coelicolor TR:Q9Z586 (EMBL:AL035569) (331 aa)%3B Fasta score E(): 0%2C 38.6%25 identity in 337 aa overlap and Mycobacterium tuberculosis RV3015C TR:O53262 (EMBL:AL021287) (337 aa)%3B Fasta score E(): 0%2C 78.3%25 identity in 337 aa overlap.;gbkey=CDS;gene=ML1706;product=conserved hypothetical protein;protein_id=CAC30659.1;transl_table=11
AL450380.1	EMBL	gene	2059816	2060892	.	-	.	ID=gene-ML1707;Name=ML1707;gbkey=Gene;gene=ML1707;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2059816	2060892	.	-	0	ID=cds-CAC30660.1;Parent=gene-ML1707;Dbxref=GOA:O33099,InterPro:IPR004506,InterPro:IPR014729,InterPro:IPR023382,NCBI_GP:CAC30660.1;Name=CAC30660.1;Note=Highly similar to many proposed tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferases including: Escherichia coli SW:TRMU_ECOLI (P25745) (368 aa)%3B Fasta score E(): 0%2C 35.6%25 identity in 362 aa overlap and Mycobacterium tuberculosis RV3024C SW:TRMU_MYCTU (O53271) (367 aa)%3B Fasta score E(): 0%2C 85.2%25 identity in 357 aa overlap.;gbkey=CDS;gene=ML1707;product=probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase;protein_id=CAC30660.1;transl_table=11
AL450380.1	EMBL	gene	2060889	2062121	.	-	.	ID=gene-ML1708;Name=ML1708;gbkey=Gene;gene=ML1708;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2060889	2062121	.	-	0	ID=cds-CAC30661.1;Parent=gene-ML1708;Dbxref=GOA:Q9CBR5,InterPro:IPR000192,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR016454,UniProtKB/TrEMBL:Q9CBR5,NCBI_GP:CAC30661.1;Name=CAC30661.1;Note=Highly similar to many aminotransferases resembling NifS%2C a protein of unknown function located within many nitrogen fixation gene clusters e.g. Azotobacter vinelandii SW:NIFS_AZOVI (P05341) (402 aa)%3B Fasta score E(): 0%2C 39.1%25 identity in 394 aa overlap. Also highly similar to Mycobacterium tuberculosis NifS-like protein RV3025C TR:O53272 (EMBL:AL021287) (393 aa)%3B Fasta score E(): 0%2C 84.9%25 identity in 391 aa overlap. Contains Pfam match to entry PF00266 aminotran_5%2C Aminotransferases class-V.%3B~Similar to ML0596;gbkey=CDS;gene=ML1708;product=putative aminotransferase;protein_id=CAC30661.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2060970	2062046	.	-	.	ID=id-ML1708;Note=Pfam match to entry PF00266 aminotran_5%2C Aminotransferases class-V%2C score 224.20%2C E-value 1.9e-63;gbkey=misc_feature;gene=ML1708
AL450380.1	EMBL	pseudogene	2062142	2062842	.	-	.	ID=gene-ML1709;Name=ML1709;gbkey=Gene;gene=ML1709;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2062142	2062842	.	-	0	ID=cds-ML1709;Parent=gene-ML1709;Note=Possible pseudogene of M. tuberculosis orthologue Rv3026c (Best blastx score 316);gbkey=CDS;gene=ML1709;product=some similarity to acyltransferase Q59601 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2063017	2063714	.	-	.	ID=gene-ML1710;Name=ML1710;gbkey=Gene;gene=ML1710;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2063017	2063714	.	-	0	ID=cds-ML1710;Parent=gene-ML1710;Note=Possible pseudogene of M. tuberculosis orthologue Rv3027c (Best blastx score 295);gbkey=CDS;gene=ML1710;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2064075	2065031	.	-	.	ID=gene-eftA;Name=eftA;gbkey=Gene;gene=eftA;gene_biotype=protein_coding;gene_synonym=ML1711
AL450380.1	EMBL	CDS	2064075	2065031	.	-	0	ID=cds-CAC30664.1;Parent=gene-eftA;Dbxref=GOA:O33096,InterPro:IPR001308,InterPro:IPR014729,InterPro:IPR014730,InterPro:IPR014731,InterPro:IPR018206,InterPro:IPR029035,NCBI_GP:CAC30664.1;Name=CAC30664.1;Note=Highly similar to many electron transfer flavoprotein alpha-subunits%2C including: Paracoccus denitrificans SW:ETFA_PARDE (P38974) (307 aa)%3B Fasta score E(): 0%2C 43.3%25 identity in 307 aa overlap and Mycobacterium tuberculosis RV3028C SW:ETFA_MYCTU (O53275) (318 aa)%3B Fasta score E(): 0%2C 89.3%25 identity in 318 aa overlap. Contains Pfam match to entry PF00766 ETF_alpha%2C Electron transfer flavoprotein alpha subunit. Contains PS00696 Electron transfer flavoprotein alpha-subunit signature.;gbkey=CDS;gene=eftA;product=electron transfer flavoprotein [alpha] subunit;protein_id=CAC30664.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2064183	2064263	.	-	.	ID=id-eftA;Note=PS00696 Electron transfer flavoprotein alpha-subunit signature;gbkey=misc_feature;gene=eftA
AL450380.1	EMBL	sequence_feature	2064201	2065028	.	-	.	ID=id-eftA-2;Note=Pfam match to entry PF00766 ETF_alpha%2C Electron transfer flavoprotein alpha subunit%2C score 434.20%2C E-value 1.2e-126;gbkey=misc_feature;gene=eftA
AL450380.1	EMBL	gene	2065080	2065880	.	-	.	ID=gene-eftB;Name=eftB;gbkey=Gene;gene=eftB;gene_biotype=protein_coding;gene_synonym=ML1712
AL450380.1	EMBL	CDS	2065080	2065880	.	-	0	ID=cds-CAC30665.1;Parent=gene-eftB;Dbxref=GOA:O33095,InterPro:IPR000049,InterPro:IPR012255,InterPro:IPR014729,InterPro:IPR014730,NCBI_GP:CAC30665.1;Name=CAC30665.1;Note=Highly similar to many electron transfer flavoprotein beta-subunits%2C including: Megasphaera elsdenii SW:ETFB_MEGEL (O85691) (270 aa)%3B Fasta score E(): 1.5e-25%2C 36.1%25 identity in 274 aa overlap and Mycobacterium tuberculosis RV3029C SW:ETFB_MYCTU (O53276) (266 aa)%3B Fasta score E(): 0%2C 95.1%25 identity in 266 aa overlap. Contains Pfam match to entry PF01012 ETF_beta%2C Electron transfer flavoprotein beta subunit.;gbkey=CDS;gene=eftB;product=electron transfer flavoprotein [beta] subunit;protein_id=CAC30665.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2065113	2065877	.	-	.	ID=id-eftB;Note=Pfam match to entry PF01012 ETF_beta%2C Electron transfer flavoprotein beta subunit%2C score 397.40%2C E-value 1.3e-115;gbkey=misc_feature;gene=eftB
AL450380.1	EMBL	gene	2066108	2066950	.	+	.	ID=gene-ML1713;Name=ML1713;gbkey=Gene;gene=ML1713;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2066108	2066950	.	+	0	ID=cds-CAC30666.1;Parent=gene-ML1713;Dbxref=GOA:Q7AQ25,InterPro:IPR013216,InterPro:IPR029063,UniProtKB/TrEMBL:Q7AQ25,NCBI_GP:CAC30666.1;Name=CAC30666.1;Note=Highly similar to several proteins of unknown function including: Mycobacterium tuberculosis RV3030 TR:O53277 (EMBL:AL021287) (274 aa)%3B Fasta score E(): 0%2C 78.2%25 identity in 280 aa overlap.;gbkey=CDS;gene=ML1713;product=conserved hypothetical protein;protein_id=CAC30666.1;transl_table=11
AL450380.1	EMBL	gene	2066947	2068515	.	+	.	ID=gene-ML1714;Name=ML1714;gbkey=Gene;gene=ML1714;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2066947	2068515	.	+	0	ID=cds-CAC30667.1;Parent=gene-ML1714;Dbxref=GOA:Q9CBR4,InterPro:IPR004300,InterPro:IPR011330,InterPro:IPR015293,InterPro:IPR027291,InterPro:IPR028995,UniProtKB/TrEMBL:Q9CBR4,NCBI_GP:CAC30667.1;Name=CAC30667.1;Note=Highly similar to several proteins of unknown function including: Mycobacterium tuberculosis hypothetical protein RV3031 TR:O53278 (EMBL:AL021287) (526 aa)%3B Fasta score E(): 0%2C 86.3%25 identity in 526 aa overlap and Pyrococcus abyssi TR:Q9V0M7 (EMBL:AJ248285) (602 aa)%3B Fasta score E(): 2.7e-22%2C 30.0%25 identity in 556 aa overlap.;gbkey=CDS;gene=ML1714;product=conserved hypothetical protein;protein_id=CAC30667.1;transl_table=11
AL450380.1	EMBL	gene	2068541	2069857	.	+	.	ID=gene-ML1715;Name=ML1715;gbkey=Gene;gene=ML1715;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2068541	2069857	.	+	0	ID=cds-CAC30668.1;Parent=gene-ML1715;Dbxref=GOA:Q9CBR3,InterPro:IPR001296,InterPro:IPR013534,UniProtKB/TrEMBL:Q9CBR3,NCBI_GP:CAC30668.1;Name=CAC30668.1;Note=Highly similar to several proteins of undefined function including: Mycobacterium tuberculosis hypothetical protein RV3032 TR:O53279 (EMBL:AL021287) (414 aa)%3B Fasta score E(): 0%2C 87.9%25 identity in 414 aa overlap. Also similar to a putative transferase from Streptomyces coelicolor TR:Q9Z5B7 (EMBL:AL035478) (406 aa)%3B Fasta score E(): 2.8e-22%2C 30.1%25 identity in 415 aa overlap. Contains Pfam match to entry PF00534 Glycos_transf_1%2C Glycosyl transferases group 1.;gbkey=CDS;gene=ML1715;product=putative transferase;protein_id=CAC30668.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2069216	2069728	.	+	.	ID=id-ML1715;Note=Pfam match to entry PF00534 Glycos_transf_1%2C Glycosyl transferases group 1%2C score 174.40%2C E-value 1.9e-48;gbkey=misc_feature;gene=ML1715
AL450380.1	EMBL	pseudogene	2070050	2071113	.	+	.	ID=gene-ML1716;Name=ML1716;gbkey=Gene;gene=ML1716;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2070050	2071113	.	+	0	ID=cds-ML1716;Parent=gene-ML1716;Note=Possible pseudogene of M. tuberculosis orthologue Rv1490 (Best blastx score 164);gbkey=CDS;gene=ML1716;product=unknown putative membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2071353	2071646	.	-	.	ID=gene-ML1717;Name=ML1717;gbkey=Gene;gene=ML1717;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2071353	2071646	.	-	0	ID=cds-CAC30670.1;Parent=gene-ML1717;Dbxref=UniProtKB/TrEMBL:Q9CBR2,NCBI_GP:CAC30670.1;Name=CAC30670.1;Note=unknown function.;gbkey=CDS;gene=ML1717;product=doubtful CDS;protein_id=CAC30670.1;transl_table=11
AL450380.1	EMBL	pseudogene	2073477	2073984	.	+	.	ID=gene-ML1718;Name=ML1718;gbkey=Gene;gene=ML1718;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2073477	2073984	.	+	0	ID=cds-ML1718;Parent=gene-ML1718;Note=Possible pseudogene of M. tuberculosis orthologue Rv2993c (Best blastx score 104);gbkey=CDS;gene=ML1718;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2074924	2075661	.	-	.	ID=gene-ML1719;Name=ML1719;gbkey=Gene;gene=ML1719;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2074924	2075661	.	-	0	ID=cds-CAC30672.1;Parent=gene-ML1719;Dbxref=InterPro:IPR001451,InterPro:IPR011004,UniProtKB/TrEMBL:Q9CBR1,NCBI_GP:CAC30672.1;Name=CAC30672.1;Note=The C-terminus of this protein is weakly similar to several including: Escherichia coli putative lipopolysaccharide biosynthesis O-acetyl transferase SW:WBBJ_ECOLI (P37750) (196 aa)%3B Fasta score E(): 4.3e-09%2C 35.8%25 identity in 134 aa overlap. Also highly similar to Mycobacterium tuberculosis RV3034C TR:O53281 (EMBL:AL021287) (300 aa)%3B Fasta score E(): 0%2C 90.6%25 identity in 244 aa overlap.;gbkey=CDS;gene=ML1719;product=conserved hypothetical protein;protein_id=CAC30672.1;transl_table=11
AL450380.1	EMBL	gene	2076101	2077195	.	+	.	ID=gene-ML1720;Name=ML1720;gbkey=Gene;gene=ML1720;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2076101	2077195	.	+	0	ID=cds-CAC30673.1;Parent=gene-ML1720;Dbxref=InterPro:IPR011047,InterPro:IPR027295,UniProtKB/TrEMBL:Q9CBR0,NCBI_GP:CAC30673.1;Name=CAC30673.1;Note=Highly similar to Mycobacterium tuberculosis hypothetical protein RV3035 TR:O53282 (EMBL:AL021287) (360 aa)%3B Fasta score E(): 0%2C 75.8%25 identity in 363 aa overlap.;gbkey=CDS;gene=ML1720;product=conserved hypothetical protein;protein_id=CAC30673.1;transl_table=11
AL450380.1	EMBL	pseudogene	2077199	2077897	.	-	.	ID=gene-ML1721;Name=ML1721;gbkey=Gene;gene=ML1721;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2077199	2077897	.	-	0	ID=cds-ML1721;Parent=gene-ML1721;Note=Possible pseudogene of M. tuberculosis orthologue Rv3036c (Best blastx score 382);gbkey=CDS;gene=ML1721;product=probable secreted protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2077982	2079647	.	-	.	ID=gene-ML1722;Name=ML1722;gbkey=Gene;gene=ML1722;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2077982	2079647	.	-	0	ID=cds-ML1722;Parent=gene-ML1722;Note=Possible pseudogene of M. tuberculosis orthologue Rv3037c (Best blastx score 298). Similarity to Rv3037 appears to have been intersected by the repeat element.;gbkey=CDS;gene=ML1722;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2078571	2079396	.	-	.	ID=id-ML1722;Note=Dispersed repeat%2C RLEP%2C copy 28;gbkey=repeat_region;gene=ML1722;pseudo=true
AL450380.1	EMBL	gene	2079775	2080758	.	-	.	ID=gene-ML1723;Name=ML1723;gbkey=Gene;gene=ML1723;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2079775	2080758	.	-	0	ID=cds-CAC30676.1;Parent=gene-ML1723;Dbxref=GOA:Q9CBQ9,InterPro:IPR013216,InterPro:IPR029063,UniProtKB/TrEMBL:Q9CBQ9,NCBI_GP:CAC30676.1;Name=CAC30676.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV3038C TR:O53285 (EMBL:AL021287) (327 aa)%3B Fasta score E(): 0%2C 80.7%25 identity in 327 aa overlap.;gbkey=CDS;gene=ML1723;product=conserved hypothetical protein;protein_id=CAC30676.1;transl_table=11
AL450380.1	EMBL	gene	2080791	2081549	.	-	.	ID=gene-ML1724;Name=ML1724;gbkey=Gene;gene=ML1724;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2080791	2081549	.	-	0	ID=cds-CAC30677.1;Parent=gene-ML1724;Dbxref=GOA:Q9CBQ8,InterPro:IPR001753,InterPro:IPR029045,UniProtKB/TrEMBL:Q9CBQ8,NCBI_GP:CAC30677.1;Name=CAC30677.1;Note=Similar to several proposed enoyl-CoA hydratases (EC 4.2.1.17) including: Rhizobium meliloti SW:ECHH_RHIME (Q52995) (257 aa)%3B Fasta score E(): 1.8e-19%2C 34.7%25 identity in 225 aa overlap%2C Clostridium acetobutylicum SW:CRT_CLOAB (P52046) (261 aa)%3B Fasta score E(): 1.7e-17%2C 27.9%25 identity in 240 aa overlap and Mycobacterium tuberculosis RV3039C TR:O53286 (EMBL:AL021287) (254 aa)%3B Fasta score E(): 0%2C 85.6%25 identity in 243 aa overlap. Contains Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family.%3B~Similar to ML2402;gbkey=CDS;gene=ML1724;product=putative enoyl-CoA hydratase/isomerase;protein_id=CAC30677.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2080992	2081495	.	-	.	ID=id-ML1724;Note=Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family%2C score 116.50%2C E-value 5.2e-31;gbkey=misc_feature;gene=ML1724
AL450380.1	EMBL	pseudogene	2081617	2082457	.	-	.	ID=gene-ML1725;Name=ML1725;gbkey=Gene;gene=ML1725;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2081617	2082457	.	-	0	ID=cds-ML1725;Parent=gene-ML1725;Note=Possible pseudogene of M. tuberculosis orthologue Rv3040c (Best blastx score 838);gbkey=CDS;gene=ML1725;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2082421	2083338	.	-	.	ID=gene-ML1726;Name=ML1726;gbkey=Gene;gene=ML1726;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2082421	2083338	.	-	0	ID=cds-CAC30679.1;Parent=gene-ML1726;Dbxref=GOA:Q9CBQ7,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CBQ7,NCBI_GP:CAC30679.1;Name=CAC30679.1;Note=Highly similar to many putative ABC transport%2C ATP-binding proteins including:Streptomyces coelicolor TR:CAB76322 (EMBL:AL158060) (279 aa)%3B Fasta score E(): 0%2C 44.4%25 identity in 277 aa overlap and Mycobacterium tuberculosis RV3041C TR:O53288 (EMBL:AL021287) (287 aa)%3B Fasta score E(): 0%2C 83.4%25 identity in 289 aa overlap. Contains Pfam match to entry PF00005 ABC_tran%2C ABC transporter. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML1726;product=putative ABC transporter protein%2C ATP-binding component;protein_id=CAC30679.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2082571	2083146	.	-	.	ID=id-ML1726;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 119.00%2C E-value 8.9e-32;gbkey=misc_feature;gene=ML1726
AL450380.1	EMBL	sequence_feature	2083102	2083125	.	-	.	ID=id-ML1726-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1726
AL450380.1	EMBL	gene	2083348	2084583	.	-	.	ID=gene-ML1727;Name=ML1727;gbkey=Gene;gene=ML1727;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2083348	2084583	.	-	0	ID=cds-CAC30680.1;Parent=gene-ML1727;Dbxref=GOA:Q9CBQ6,InterPro:IPR002912,InterPro:IPR004469,InterPro:IPR006383,InterPro:IPR023190,InterPro:IPR023214,UniProtKB/TrEMBL:Q9CBQ6,NCBI_GP:CAC30680.1;Name=CAC30680.1;Note=Similar in the C-terminus to many phosphoserine phosphatases (EC 3.1.3.3) including: Escherichia coli SW:SERB_ECOLI (P06862) (322 aa)%3B Fasta score E(): 1.7e-29%2C 38.5%25 identity in 309 aa overlap and Mycobacterium tuberculosis RV3042C TR:O53289 (EMBL:AL021287) (409 aa)%3B Fasta score E(): 0%2C 86.3%25 identity in 408 aa overlap. Contains Pfam match to entry PF00702 Hydrolase%2C haloacid dehalogenase-like hydrolase.;gbkey=CDS;gene=ML1727;product=putative phosphoserine phosphatase;protein_id=CAC30680.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2083492	2084043	.	-	.	ID=id-ML1727;Note=Pfam match to entry PF00702 Hydrolase%2C haloacid dehalogenase-like hydrolase%2C score 15.00%2C E-value 0.00037;gbkey=misc_feature;gene=ML1727
AL450380.1	EMBL	gene	2084623	2086347	.	-	.	ID=gene-ML1728;Name=ML1728;gbkey=Gene;gene=ML1728;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2084623	2086347	.	-	0	ID=cds-CAC30681.1;Parent=gene-ML1728;Dbxref=GOA:Q9CBQ5,InterPro:IPR000883,InterPro:IPR014241,InterPro:IPR023615,InterPro:IPR023616,NCBI_GP:CAC30681.1;Name=CAC30681.1;Note=Highly similar to many cytochrome C oxidases (EC 1.9.3.1) including: Bacillus firmus SW:COX1_BACFI (Q04440) (624 aa)%3B Fasta score E(): 0%2C 51.9%25 identity in 522 aa overlap and Mycobacterium tuberculosis SW:COX1_MYCTU (O53290) (573 aa)%3B Fasta score E(): 0%2C 95.4%25 identity in 566 aa overlap. Contains Pfam match to entry PF00115 COX1%2C Cytochrome C and Quinol oxidase polypeptide I. Contains PS00077 Heme-copper oxidase catalytic subunit.;gbkey=CDS;gene=ML1728;product=cytochrome C oxidase%2C polypeptide I;protein_id=CAC30681.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2084896	2086260	.	-	.	ID=id-ML1728;Note=Pfam match to entry PF00115 COX1%2C Cytochrome C and Quinol oxidase polypeptide I%2C score 756.40%2C E-value 1.2e-223;gbkey=misc_feature;gene=ML1728
AL450380.1	EMBL	sequence_feature	2085406	2085570	.	-	.	ID=id-ML1728-2;Note=PS00077 Heme-copper oxidase catalytic subunit;gbkey=misc_feature;gene=ML1728
AL450380.1	EMBL	ribosome_entry_site	2086348	2086355	.	-	.	ID=id-AL450380.1:2086348..2086355;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	2086562	2087656	.	+	.	ID=gene-fecB;Name=fecB;gbkey=Gene;gene=fecB;gene_biotype=protein_coding;gene_synonym=ML1729
AL450380.1	EMBL	CDS	2086562	2087656	.	+	0	ID=cds-CAC30682.1;Parent=gene-fecB;Dbxref=InterPro:IPR002491,UniProtKB/TrEMBL:Q9CBQ4,NCBI_GP:CAC30682.1;Name=CAC30682.1;Note=Highly similar to several proteins involved in iron transport including: Mycobacterium avium FecB precursor TR:AAF73189 (EMBL:AF151098) (364 aa)%3B Fasta score E(): 0%2C 67.4%25 identity in 362 aa overlap and Mycobacterium tuberculosis RV3044 TR:O53291 (EMBL:AL021287) (359 aa)%3B Fasta score E(): 0%2C 75.6%25 identity in 357 aa overlap. Contains a possible N-terminal signal sequence and an appropriately positioned Prokaryotic membrane lipoprotein lipid attachment site. Contains Pfam match to entry PF01497 Peripla_BP_2%2C Periplasmic binding protein. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=fecB;product=putative FeIII-dicitrate transporter lipoprotein;protein_id=CAC30682.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2086592	2086624	.	+	.	ID=id-fecB;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=fecB
AL450380.1	EMBL	sequence_feature	2086838	2087578	.	+	.	ID=id-fecB-2;Note=Pfam match to entry PF01497 Peripla_BP_2%2C Periplasmic binding protein%2C score 193.50%2C E-value 3.2e-54;gbkey=misc_feature;gene=fecB
AL450380.1	EMBL	gene	2087916	2089004	.	+	.	ID=gene-adhA;Name=adhA;gbkey=Gene;gene=adhA;gene_biotype=protein_coding;gene_synonym=ML1730
AL450380.1	EMBL	CDS	2087916	2089004	.	+	0	ID=cds-CAC30683.1;Parent=gene-adhA;Dbxref=GOA:Q9CBQ3,InterPro:IPR002085,InterPro:IPR002328,InterPro:IPR011032,InterPro:IPR013149,InterPro:IPR013154,InterPro:IPR016040,UniProtKB/TrEMBL:Q9CBQ3,NCBI_GP:CAC30683.1;Name=CAC30683.1;Note=Highly similar to many Prokaryotic and Eukaryotic dehydrogenases including: Mycobacterium tuberculosis RV3045 SW:ADH_MYCTU (P31975) (346 aa)%3B Fasta score E(): 0%2C 85.8%25 identity in 346 aa overlap and Arabidopsis thaliana SW:CAD1_ARATH (P42734) (360 aa)%3B Fasta score E(): 0%2C 48.8%25 identity in 344 aa overlap. Contains Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases. Contains PS00059 Zinc-containing alcohol dehydrogenases signature.%3B~Similar to ML2053;gbkey=CDS;gene=adhA;product=alcohol dehydrogenase;protein_id=CAC30683.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2087985	2088989	.	+	.	ID=id-adhA;Note=Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases%2C score 430.50%2C E-value 1.5e-125;gbkey=misc_feature;gene=adhA
AL450380.1	EMBL	sequence_feature	2088147	2088191	.	+	.	ID=id-adhA-2;Note=PS00059 Zinc-containing alcohol dehydrogenases signature;gbkey=misc_feature;gene=adhA
AL450380.1	EMBL	gene	2090613	2091590	.	-	.	ID=gene-nrdF;Name=nrdF;gbkey=Gene;gene=nrdF;gene_biotype=protein_coding;gene_synonym=ML1731
AL450380.1	EMBL	CDS	2090613	2091590	.	-	0	ID=cds-CAC30684.1;Parent=gene-nrdF;Dbxref=GOA:Q9CBQ2,InterPro:IPR000358,InterPro:IPR009078,InterPro:IPR012348,InterPro:IPR026023,InterPro:IPR026494,NCBI_GP:CAC30684.1;Name=CAC30684.1;Note=Highly similar to many ribonucleoside-diphosphate reductase 2 beta chains (EC 1.17.4.1)%2C involved in DNA replication%2C including: Escherichia coli SW:RIR4_ECOLI (P37146) (319 aa)%3B Fasta score E(): 0%2C 71.6%25 identity in 320 aa overlap and Mycobacterium tuberculosis RV3048 TR:Q50549 (EMBL:AL021287) (324 aa)%3B Fasta score E(): 0%2C 93.5%25 identity in 324 aa overlap. Contains Pfam match to entry PF00268 ribonuc_red%2C Ribonucleotide reductases. Contains PS00368 Ribonucleotide reductase small subunit signature.;gbkey=CDS;gene=nrdF;product=ribonucleotide reductase small subunit;protein_id=CAC30684.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2090661	2091482	.	-	.	ID=id-nrdF;Note=Pfam match to entry PF00268 ribonuc_red%2C Ribonucleotide reductases%2C score 271.30%2C E-value 1.5e-92;gbkey=misc_feature;gene=nrdF
AL450380.1	EMBL	sequence_feature	2091234	2091284	.	-	.	ID=id-nrdF-2;Note=PS00368 Ribonucleotide reductase small subunit signature;gbkey=misc_feature;gene=nrdF
AL450380.1	EMBL	pseudogene	2091753	2093235	.	-	.	ID=gene-ML1732;Name=ML1732;gbkey=Gene;gene=ML1732;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2091753	2093235	.	-	0	ID=cds-ML1732;Parent=gene-ML1732;Note=Possible pseudogene of M. tuberculosis orthologue Rv3049c (Best blastx score 1312);gbkey=CDS;gene=ML1732;product=Probable monooxygenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2093450	2094277	.	-	.	ID=gene-ML1733;Name=ML1733;gbkey=Gene;gene=ML1733;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2093450	2094277	.	-	0	ID=cds-CAC30686.1;Parent=gene-ML1733;Dbxref=GOA:Q9CBQ1,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR011075,InterPro:IPR015893,UniProtKB/TrEMBL:Q9CBQ1,NCBI_GP:CAC30686.1;Name=CAC30686.1;Note=Similar to Mycobacterium tuberculosis RV3050C TR:O53295 (EMBL:AL021287) (246 aa)%3B Fasta score E(): 0%2C 86.6%25 identity in 238 aa overlap. Contains a probable helix-turn-helix motif at aa 79-100 (Score 1407%2C SD +3.98) Contains Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family.;gbkey=CDS;gene=ML1733;product=putative TetR-family transcriptional regulator;protein_id=CAC30686.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2093951	2094088	.	-	.	ID=id-ML1733;Note=Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family%2C score 61.90%2C E-value 1.3e-14;gbkey=misc_feature;gene=ML1733
AL450380.1	EMBL	gene	2094324	2096405	.	-	.	ID=gene-nrdE;Name=nrdE;gbkey=Gene;gene=nrdE;gene_biotype=protein_coding;gene_synonym=ML1734
AL450380.1	EMBL	CDS	2094324	2096405	.	-	0	ID=cds-CAC30687.1;Parent=gene-nrdE;Dbxref=GOA:Q9CBQ0,InterPro:IPR000788,InterPro:IPR008926,InterPro:IPR013346,InterPro:IPR013509,InterPro:IPR013554,InterPro:IPR026459,NCBI_GP:CAC30687.1;Name=CAC30687.1;Note=Highly similar to Mycobacterium tuberculosis ribonucleoside-diphosphate reductase alpha chain (EC 1.17.4.1) RV3051C SW:RIR1_MYCTU (P50640) (693 aa)%3B Fasta score E(): 0%2C 93.2%25 identity in 693 aa overlap. Contains Pfam match to entry PF00317 ribonucleo_red%2C Ribonucleotide reductase. Contains PS00089 Ribonucleotide reductase large subunit signature.;gbkey=CDS;gene=nrdE;product=ribonucleoside diphosphate reductase [alpha] chain;protein_id=CAC30687.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2094390	2096201	.	-	.	ID=id-nrdE;Note=Pfam match to entry PF00317 ribonucleo_red%2C Ribonucleotide reductase%2C score 717.40%2C E-value 1.5e-268;gbkey=misc_feature;gene=nrdE
AL450380.1	EMBL	sequence_feature	2094705	2094773	.	-	.	ID=id-nrdE-2;Note=PS00089 Ribonucleotide reductase large subunit signature;gbkey=misc_feature;gene=nrdE
AL450380.1	EMBL	gene	2096490	2096906	.	-	.	ID=gene-nrdI;Name=nrdI;gbkey=Gene;gene=nrdI;gene_biotype=protein_coding;gene_synonym=ML1735
AL450380.1	EMBL	CDS	2096490	2096906	.	-	0	ID=cds-CAC30688.1;Parent=gene-nrdI;Dbxref=InterPro:IPR004465,InterPro:IPR020852,InterPro:IPR029039,NCBI_GP:CAC30688.1;Name=CAC30688.1;Note=Highly similar to many NrdI-family proteins%2C the function of which are unknown but thought to be involved with ribonucleoside reductase functioning%2C including: Escherichia coli SW:NRDI_ECOLI (Q47415) (136 aa)%3B Fasta score E(): 2.7e-31%2C 59.3%25 identity in 135 aa overlap and Mycobacterium tuberculosis RV3052C SW:NRDI_MYCTU (P95107) (150 aa)%3B Fasta score E(): 0%2C 79.7%25 identity in 138 aa overlap.;gbkey=CDS;gene=nrdI;product=NrdI-family protein;protein_id=CAC30688.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	2096911	2096916	.	-	.	ID=id-AL450380.1:2096911..2096916;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	2096935	2097177	.	-	.	ID=gene-nrdH;Name=nrdH;gbkey=Gene;gene=nrdH;gene_biotype=protein_coding;gene_synonym=ML1736
AL450380.1	EMBL	CDS	2096935	2097177	.	-	0	ID=cds-CAC30689.1;Parent=gene-nrdH;Dbxref=GOA:Q9CBP8,InterPro:IPR002109,InterPro:IPR011909,InterPro:IPR012336,UniProtKB/TrEMBL:Q9CBP8,NCBI_GP:CAC30689.1;Name=CAC30689.1;Note=Highly similar to many glutaredoxin-like proteins involved in electron transport for the ribonucleotide reductase system NrdEF%2C including: Escherichia coli SW:NRDH_ECOLI (Q47414) (81 aa)%3B Fasta score E(): 1.1e-11%2C 44.0%25 identity in 75 aa overlap and Mycobacterium tuberculosis RV3053C TR:P95106 (EMBL:Z83866) (79 aa)%3B Fasta score E(): 7.7e-31%2C 91.1%25 identity in 79 aa overlap.;gbkey=CDS;gene=nrdH;product=glutaredoxin electron transport component of NrdEF;protein_id=CAC30689.1;transl_table=11
AL450380.1	EMBL	pseudogene	2097647	2098159	.	-	.	ID=gene-ML1737;Name=ML1737;gbkey=Gene;gene=ML1737;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2097647	2098159	.	-	0	ID=cds-ML1737;Parent=gene-ML1737;Note=Possible pseudogene of M. tuberculosis orthologue Rv3054c (Best blastx score 267);gbkey=CDS;gene=ML1737;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2098322	2098911	.	+	.	ID=gene-ML1738;Name=ML1738;gbkey=Gene;gene=ML1738;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2098322	2098911	.	+	0	ID=cds-ML1738;Parent=gene-ML1738;Note=Possible pseudogene of M. tuberculosis orthologue Rv3055 (Best blastx score 428);gbkey=CDS;gene=ML1738;product=putative transcriptional regulator (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2098933	2099941	.	+	.	ID=gene-dinP;Name=dinP;gbkey=Gene;gene=dinP;gene_biotype=pseudogene;gene_synonym=ML1739;pseudo=true
AL450380.1	EMBL	CDS	2098933	2099941	.	+	0	ID=cds-dinP;Parent=gene-dinP;Note=Possible pseudogene of M. tuberculosis orthologue dinP (Best blastx score 362);gbkey=CDS;gene=dinP;product=DNA-damage-inducible protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2099981	2100919	.	-	.	ID=gene-ML1740;Name=ML1740;gbkey=Gene;gene=ML1740;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2099981	2100919	.	-	0	ID=cds-CAC30693.1;Parent=gene-ML1740;Dbxref=GOA:Q9CBP7,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:Q9CBP7,NCBI_GP:CAC30693.1;Name=CAC30693.1;Note=Similar to several including: Thermotoga maritima 3-oxoacyl-[acyl-carrier protein] reductase SW:FABG_THEMA (Q9X248) (246 aa)%3B Fasta score E(): 1.4e-18%2C 33.2%25 identity in 193 aa overlap and Mycobacterium tuberculosis possible ketoacyl reductase RV3057C TR:P95101 (EMBL:Z83866) (287 aa)%3B Fasta score E(): 0%2C 81.8%25 identity in 280 aa overlap. Contains Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase. Contains PS00061 Short-chain dehydrogenases/reductases family signature.;gbkey=CDS;gene=ML1740;product=possible short chain reductase;protein_id=CAC30693.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2100329	2100889	.	-	.	ID=id-ML1740;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 191.90%2C E-value 9.8e-54;gbkey=misc_feature;gene=ML1740
AL450380.1	EMBL	sequence_feature	2100392	2100478	.	-	.	ID=id-ML1740-2;Note=PS00061 Short-chain dehydrogenases/reductases family signature;gbkey=misc_feature;gene=ML1740
AL450380.1	EMBL	pseudogene	2100929	2101538	.	-	.	ID=gene-ML1741;Name=ML1741;gbkey=Gene;gene=ML1741;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2100929	2101538	.	-	0	ID=cds-ML1741;Parent=gene-ML1741;Note=Possible pseudogene of M. tuberculosis orthologue Rv3058c (Best blastx score 207);gbkey=CDS;gene=ML1741;product=putative transcriptional regulator (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2101763	2103138	.	+	.	ID=gene-ML1742;Name=ML1742;gbkey=Gene;gene=ML1742;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2101763	2103138	.	+	0	ID=cds-ML1742;Parent=gene-ML1742;Note=Possible pseudogene of M. tuberculosis orthologue Rv3059 (Best blastx score 393);gbkey=CDS;gene=ML1742;product=possible lanosterol 14-alpha-demethylases (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2103804	2104008	.	-	.	ID=gene-PE-6;Name=PE;gbkey=Gene;gene=PE;gene_biotype=pseudogene;gene_synonym=ML1743;pseudo=true
AL450380.1	EMBL	CDS	2103804	2104008	.	-	0	ID=cds-PE-5;Parent=gene-PE-6;Note=Possible pseudogene of M. tuberculosis orthologue PE (Best blastx score 79);gbkey=CDS;gene=PE;product=PE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2105016	2105668	.	-	.	ID=gene-ML1744;Name=ML1744;gbkey=Gene;gene=ML1744;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2105016	2105668	.	-	0	ID=cds-ML1744;Parent=gene-ML1744;Note=Possible pseudogene of M. tuberculosis orthologue Rv3060c (Best blastx score 270);gbkey=CDS;gene=ML1744;product=transcriptional regulator (GntR family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2106679	2108846	.	-	.	ID=gene-fadE22;Name=fadE22;gbkey=Gene;gene=fadE22;gene_biotype=pseudogene;gene_synonym=ML1745;pseudo=true
AL450380.1	EMBL	CDS	2106679	2108846	.	-	0	ID=cds-fadE22;Parent=gene-fadE22;Note=Possible pseudogene of M. tuberculosis orthologue fadE22 (Best blastx score 1078);gbkey=CDS;gene=fadE22;product=acyl-CoA dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2109175	2109542	.	-	.	ID=gene-ML1746;Name=ML1746;gbkey=Gene;gene=ML1746;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2109175	2109542	.	-	0	ID=cds-ML1746;Parent=gene-ML1746;Note=Possible pseudogene of M. tuberculosis orthologue Rv1144 (Best blastx score 107);gbkey=CDS;gene=ML1746;product=short-chain alcohol dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2109658	2110127	.	+	.	ID=gene-ligB;Name=ligB;gbkey=Gene;gene=ligB;gene_biotype=pseudogene;gene_synonym=ML1747;pseudo=true
AL450380.1	EMBL	CDS	2109658	2110127	.	+	0	ID=cds-ligB;Parent=gene-ligB;Note=Possible pseudogene of M. tuberculosis orthologue ligB (Best blastx score 120);gbkey=CDS;gene=ligB;product=DNA ligase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2110110	2111050	.	+	.	ID=gene-cstA;Name=cstA;gbkey=Gene;gene=cstA;gene_biotype=pseudogene;gene_synonym=ML1748;pseudo=true
AL450380.1	EMBL	CDS	2110110	2111050	.	+	0	ID=cds-cstA;Parent=gene-cstA;Note=Possible pseudogene of M. tuberculosis orthologue cstA (Best blastx score 200);gbkey=CDS;gene=cstA;product=starvation-induced stress response protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2113323	2114583	.	+	.	ID=id-AL450380.1:2113323..2114583;Note=1261 bp repeat%2C 100%25 identical to complement(2207445..2208705);gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2113890	2114504	.	-	.	ID=gene-ML1749;Name=ML1749;gbkey=Gene;gene=ML1749;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2113890	2114504	.	-	0	ID=cds-ML1749;Parent=gene-ML1749;Note=Possible transposase pseudogene which is similar to Mycobacterium smegmatis putative IS1549 transposase TR:070063.;gbkey=CDS;gene=ML1749;pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2114611	2114631	.	-	.	ID=id-AL450380.1:2114611..2114631;Note=21 bp sequence found at 3'-ends of copies 2%2C 3%2C 4 and 6 of LEPREP;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	2114632	2114925	.	-	.	ID=id-AL450380.1:2114632..2114925;Note=Dispersed repeat%2C LEPREP%2C copy 4%2C truncated at 5'-end;gbkey=repeat_region
AL450380.1	EMBL	gene	2115121	2116992	.	-	.	ID=gene-ML1750;Name=ML1750;gbkey=Gene;gene=ML1750;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2115121	2116992	.	-	0	ID=cds-CAC30703.1;Parent=gene-ML1750;Dbxref=InterPro:IPR000160,InterPro:IPR001633,InterPro:IPR003018,InterPro:IPR029016,InterPro:IPR029787,UniProtKB/TrEMBL:Q9CBP6,NCBI_GP:CAC30703.1;Name=CAC30703.1;Note=The C-terminus of this protein is highly similar to many including several hypothetical proteins and putative phosphodiesterases e.g. Mycobacterium tuberculosis RV1354C SW:YD54_MYCTU (Q11024) (623 aa)%3B Fasta score E(): 0%2C 63.3%25 identity in 605 aa overlap and Streptomyces coelicolor TR:Q9Z584 (EMBL:AL035569) (746 aa)%3B Fasta score E(): 0%2C 40.0%25 identity in 455 aa overlap. Contains Pfam match to entry PF00990 DUF9%2C Domain of unknown function. Contains Pfam match to entry PF00563 DUF2%2C Domain of unknown function 2. Contains Pfam match to entry PF01590 GAF%2C GAF domain.%3B~The C-terminus of the predicted product of this CDS is similar to ML1752;gbkey=CDS;gene=ML1750;product=conserved hypothetical protein;protein_id=CAC30703.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2115214	2115954	.	-	.	ID=id-ML1750;Note=Pfam match to entry PF00563 DUF2%2C Domain of unknown function 2%2C score 321.50%2C E-value 9.5e-93;gbkey=misc_feature;gene=ML1750
AL450380.1	EMBL	sequence_feature	2115994	2116479	.	-	.	ID=id-ML1750-2;Note=Pfam match to entry PF00990 DUF9%2C Domain of unknown function%2C score 155.50%2C E-value 9.4e-43;gbkey=misc_feature;gene=ML1750
AL450380.1	EMBL	sequence_feature	2116480	2116926	.	-	.	ID=id-ML1750-3;Note=Pfam match to entry PF01590 GAF%2C GAF domain%2C score 57.90%2C E-value 2.2e-13;gbkey=misc_feature;gene=ML1750
AL450380.1	EMBL	gene	2117010	2119175	.	-	.	ID=gene-ML1751;Name=ML1751;gbkey=Gene;gene=ML1751;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2117010	2119175	.	-	0	ID=cds-CAC30704.1;Parent=gene-ML1751;Dbxref=GOA:Q9CBP5,InterPro:IPR000415,InterPro:IPR000594,InterPro:IPR009036,InterPro:IPR016040,UniProtKB/TrEMBL:Q9CBP5,NCBI_GP:CAC30704.1;Name=CAC30704.1;Note=Similar to several proteins of undefined function e.g. Mycobacterium tuberculosis SW:YD55_MYCTU (Q11025) (715 aa)%3B Fasta score E(): 0%2C 57.3%25 identity in 705 aa overlap. Contains Pfam match to entry PF00899 ThiF_family%2C ThiF family.;gbkey=CDS;gene=ML1751;product=conserved hypothetical protein;protein_id=CAC30704.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2118417	2118830	.	-	.	ID=id-ML1751;Note=Pfam match to entry PF00899 ThiF_family%2C ThiF family%2C score 113.20%2C E-value 4.9e-30;gbkey=misc_feature;gene=ML1751
AL450380.1	EMBL	gene	2121319	2122227	.	-	.	ID=gene-ML1752;Name=ML1752;gbkey=Gene;gene=ML1752;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2121319	2122227	.	-	0	ID=cds-CAC30705.1;Parent=gene-ML1752;Dbxref=InterPro:IPR001633,UniProtKB/TrEMBL:Q9CBP4,NCBI_GP:CAC30705.1;Name=CAC30705.1;Note=Similar to many including the C-terminus of several putative phosphodiesterases e.g. Streptomyces coelicolor TR:Q9Z584 (EMBL:AL035569) (746 aa)%3B Fasta score E(): 2.5e-32%2C 38.4%25 identity in 305 aa overlap as well as several proteins of undefined function e.g. Mycobacterium tuberculosis RV1357C SW:YD57_MYCTU (Q11027) (307 aa)%3B Fasta score E(): 0%2C 73.9%25 identity in 261 aa overlap. Contains Pfam match to entry PF00563 DUF2%2C Domain of unknown function 2.%3B~Similar to the C-terminus of ML1750;gbkey=CDS;gene=ML1752;product=conserved hypothetical protein;protein_id=CAC30705.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2121331	2122095	.	-	.	ID=id-ML1752;Note=Pfam match to entry PF00563 DUF2%2C Domain of unknown function 2%2C score 404.00%2C E-value 1.5e-117;gbkey=misc_feature;gene=ML1752
AL450380.1	EMBL	gene	2123768	2127088	.	-	.	ID=gene-ML1753;Name=ML1753;gbkey=Gene;gene=ML1753;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2123768	2127088	.	-	0	ID=cds-CAC30706.1;Parent=gene-ML1753;Dbxref=GOA:Q9CBP3,InterPro:IPR000792,InterPro:IPR001054,InterPro:IPR011990,InterPro:IPR011991,InterPro:IPR016032,InterPro:IPR027417,InterPro:IPR029787,UniProtKB/TrEMBL:Q9CBP3,NCBI_GP:CAC30706.1;Name=CAC30706.1;Note=Highly similar to many from Mycobacterium tuberculosis e.g. probable transcriptional regulatory protein RV1358 TR:Q11028 (EMBL:Z75555) (1159 aa)%3B Fasta score E(): 0%2C 58.1%25 identity in 1084 aa overlap. Contains a probable helix-turn-helix motif at aa 1063-1084 (Score 1080%2C SD +2.87) Contains Pfam match to entry PF00196 GerE%2C Bacterial regulatory proteins%2C luxR family. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00622 Bacterial regulatory proteins.;gbkey=CDS;gene=ML1753;product=possible transcriptional regulator;protein_id=CAC30706.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2123771	2123956	.	-	.	ID=id-ML1753;Note=Pfam match to entry PF00196 GerE%2C Bacterial regulatory proteins%2C luxR family%2C score 60.20%2C E-value 4.4e-14;gbkey=misc_feature;gene=ML1753
AL450380.1	EMBL	sequence_feature	2123822	2123905	.	-	.	ID=id-ML1753-2;Note=PS00622 Bacterial regulatory proteins;gbkey=misc_feature;gene=ML1753
AL450380.1	EMBL	sequence_feature	2126309	2126332	.	-	.	ID=id-ML1753-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1753
AL450380.1	EMBL	pseudogene	2128423	2128791	.	+	.	ID=gene-ML1754;Name=ML1754;gbkey=Gene;gene=ML1754;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2128423	2128791	.	+	0	ID=cds-ML1754;Parent=gene-ML1754;Note=Possible pseudogene similar to M. tuberculosis orthologue Rv1361c%2C PPE-family protein;gbkey=CDS;gene=ML1754;product=PPE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2129657	2131033	.	-	.	ID=gene-sdaA;Name=sdaA;gbkey=Gene;gene=sdaA;gene_biotype=protein_coding;gene_synonym=ML1755
AL450380.1	EMBL	CDS	2129657	2131033	.	-	0	ID=cds-CAC30708.1;Parent=gene-sdaA;Dbxref=GOA:Q9CBP2,InterPro:IPR004644,InterPro:IPR005130,InterPro:IPR005131,InterPro:IPR029009,UniProtKB/TrEMBL:Q9CBP2,NCBI_GP:CAC30708.1;Name=CAC30708.1;Note=Highly similar to many L-serine dehydratases (EC 4.2.1.13) including: Escherichia coli SW:TDCG_ECOLI (P42630) (454 aa)%3B Fasta score E(): 0%2C 53.2%25 identity in 457 aa overlap and Mycobacterium tuberculosis RV0069 SW:SDHL_MYCTU (O53614) (461 aa)%3B Fasta score E(): 0%2C 69.2%25 identity in 461 aa overlap.;gbkey=CDS;gene=sdaA;product=L-serine dehydratase;protein_id=CAC30708.1;transl_table=11
AL450380.1	EMBL	gene	2131291	2131614	.	+	.	ID=gene-ML1756;Name=ML1756;gbkey=Gene;gene=ML1756;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2131291	2131614	.	+	0	ID=cds-CAC30709.1;Parent=gene-ML1756;Dbxref=GOA:Q9CBP1,InterPro:IPR000390,NCBI_GP:CAC30709.1;Name=CAC30709.1;Note=Highly similar to several multidrug resistance proteins e.g. Escherichia coli quaternary ammonium compound-resistance protein SW: QACE_ECOLI and Mycobacterium tuberculosis SW:YU65_MYCTU (P95094) (107 aa)%3B Fasta score E(): 1e-31%2C 79.0%25 identity in 105 aa overlap.Contains multiple possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF00893 DUF7%2C Integral membrane protein.;gbkey=CDS;gene=ML1756;product=probable multidrug resistance protein.;protein_id=CAC30709.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2131291	2131572	.	+	.	ID=id-ML1756;Note=Pfam match to entry PF00893 DUF7%2C Integral membrane protein%2C score 124.50%2C E-value 1.9e-33;gbkey=misc_feature;gene=ML1756
AL450380.1	EMBL	pseudogene	2131611	2132167	.	+	.	ID=gene-ML1757;Name=ML1757;gbkey=Gene;gene=ML1757;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2131611	2132167	.	+	0	ID=cds-ML1757;Parent=gene-ML1757;Note=Possible pseudogene of M. tuberculosis orthologue Rv3066 (Best blastx score 163);gbkey=CDS;gene=ML1757;product=putative transcriptional regulator (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2132586	2132929	.	-	.	ID=gene-ML1758;Name=ML1758;gbkey=Gene;gene=ML1758;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2132586	2132929	.	-	0	ID=cds-ML1758;Parent=gene-ML1758;Note=Possible pseudogene of M. tuberculosis orthologue Rv2776c (Best blastx score 219);gbkey=CDS;gene=ML1758;product=probable oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2133844	2133919	.	-	.	ID=gene-alaU;Name=alaU;gbkey=Gene;gene=alaU;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	2133844	2133919	.	-	.	ID=rna-alaU;Parent=gene-alaU;Note=tRNA Ala anticodon GGC%2C Cove score 82.89;gbkey=tRNA;gene=alaU;product=tRNA-Ala
AL450380.1	EMBL	exon	2133844	2133919	.	-	.	ID=exon-alaU-1;Parent=rna-alaU;Note=tRNA Ala anticodon GGC%2C Cove score 82.89;gbkey=tRNA;gene=alaU;product=tRNA-Ala
AL450380.1	EMBL	pseudogene	2133990	2134962	.	-	.	ID=gene-pgmA;Name=pgmA;gbkey=Gene;gene=pgmA;gene_biotype=pseudogene;gene_synonym=ML1759;pseudo=true
AL450380.1	EMBL	CDS	2133990	2134962	.	-	0	ID=cds-pgmA;Parent=gene-pgmA;Note=Possible pseudogene of M. tuberculosis orthologue pgmA (Best blastx score 432);gbkey=CDS;gene=pgmA;product=phosphoglucomutase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2134960	2135335	.	-	.	ID=id-AL450380.1:2134960..2135335;Note=Dispersed repeat%2C RLEP%2C copy 29;gbkey=repeat_region
AL450380.1	EMBL	gene	2135494	2135567	.	-	.	ID=gene-metV;Name=metV;gbkey=Gene;gene=metV;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	2135494	2135567	.	-	.	ID=rna-metV;Parent=gene-metV;Note=tRNA Met anticodon CAT%2C Cove score 90.06;gbkey=tRNA;gene=metV;product=tRNA-Met
AL450380.1	EMBL	exon	2135494	2135567	.	-	.	ID=exon-metV-1;Parent=rna-metV;Note=tRNA Met anticodon CAT%2C Cove score 90.06;gbkey=tRNA;gene=metV;product=tRNA-Met
AL450380.1	EMBL	pseudogene	2135602	2135845	.	-	.	ID=gene-ML1760;Name=ML1760;gbkey=Gene;gene=ML1760;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2135602	2135845	.	-	0	ID=cds-ML1760;Parent=gene-ML1760;Note=Possible pseudogene of M. tuberculosis orthologue Rv2309c (Best blastx score 88);gbkey=CDS;gene=ML1760;product=integrase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2136027	2136371	.	-	.	ID=gene-ML1761;Name=ML1761;gbkey=Gene;gene=ML1761;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2136027	2136371	.	-	0	ID=cds-CAC30714.1;Parent=gene-ML1761;Dbxref=UniProtKB/TrEMBL:Q9CBP0,NCBI_GP:CAC30714.1;Name=CAC30714.1;Note=unknown function.;gbkey=CDS;gene=ML1761;product=hypothetical protein;protein_id=CAC30714.1;transl_table=11
AL450380.1	EMBL	pseudogene	2136879	2137942	.	-	.	ID=gene-ML1762;Name=ML1762;gbkey=Gene;gene=ML1762;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2136879	2137942	.	-	0	ID=cds-ML1762;Parent=gene-ML1762;Note=Possible pseudogene of M. tuberculosis orthologue Rv2690c (Best blastx score 105);gbkey=CDS;gene=ML1762;product=possible transport protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2138763	2138978	.	+	.	ID=gene-ML1763;Name=ML1763;gbkey=Gene;gene=ML1763;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2138763	2138978	.	+	0	ID=cds-CAC30716.1;Parent=gene-ML1763;Dbxref=UniProtKB/TrEMBL:Q9CBN9,NCBI_GP:CAC30716.1;Name=CAC30716.1;Note=unknown function.;gbkey=CDS;gene=ML1763;product=hypothetical protein;protein_id=CAC30716.1;transl_table=11
AL450380.1	EMBL	pseudogene	2139547	2139873	.	+	.	ID=gene-ML1764;Name=ML1764;gbkey=Gene;gene=ML1764;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2139547	2139873	.	+	0	ID=cds-ML1764;Parent=gene-ML1764;Note=Possible pseudogene fragment%3B similar to part of several trkA (potassium transport) genes e.g. SW:TRKA_METTH (O27333) (216 aa)%3B Fasta score E(): 1.3%2C 33.8%25 identity in 71 aa overlap.;gbkey=CDS;gene=ML1764;product=putative transport protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2140225	2140627	.	-	.	ID=gene-ML1765;Name=ML1765;gbkey=Gene;gene=ML1765;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2140225	2140627	.	-	0	ID=cds-ML1765;Parent=gene-ML1765;Note=Possible pseudogene of M. tuberculosis orthologue Rv2313c (Best blastx score 125);gbkey=CDS;gene=ML1765;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2140720	2141742	.	-	.	ID=gene-ML1766;Name=ML1766;gbkey=Gene;gene=ML1766;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2140720	2141742	.	-	0	ID=cds-ML1766;Parent=gene-ML1766;Note=Possible pseudogene of M. tuberculosis orthologue Rv2314c (Best blastx score 286);gbkey=CDS;gene=ML1766;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2141838	2143213	.	-	.	ID=gene-ML1767;Name=ML1767;gbkey=Gene;gene=ML1767;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2141838	2143213	.	-	0	ID=cds-ML1767;Parent=gene-ML1767;Note=Possible pseudogene of M. tuberculosis orthologue Rv2315c (Best blastx score 309);gbkey=CDS;gene=ML1767;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2143276	2144262	.	+	.	ID=gene-uspA;Name=uspA;gbkey=Gene;gene=uspA;gene_biotype=protein_coding;gene_synonym=ML1768
AL450380.1	EMBL	CDS	2143276	2144262	.	+	0	ID=cds-CAC30721.1;Parent=gene-uspA;Dbxref=GOA:Q9CBN8,InterPro:IPR000515,UniProtKB/TrEMBL:Q9CBN8,NCBI_GP:CAC30721.1;Name=CAC30721.1;Note=Similar to M. tuberculosis Rv2316 TR:P71896 (EMBL:Z79702) (290 aa)%3B Fasta score E(): 0%2C 82.4%25 identity in 289 aa overlap probable sugar transport protein uspA%2C and to many others e.g. Thermococcus litoralis maltore transporter malF TR:O51924 (EMBL:AF012836) (300 aa)%3B Fasta score E(): 4.7e-28%2C 33.6%25 identity in 283 aa overlap. Contains Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component.%3B~Similar to ML1426%2C ML1087%2C ML1425 and ML1088;gbkey=CDS;gene=uspA;product=sugar transport integral membrane protein;protein_id=CAC30721.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2143909	2144142	.	+	.	ID=id-uspA;Note=Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component%2C score 51.90%2C E-value 1.4e-11;gbkey=misc_feature;gene=uspA
AL450380.1	EMBL	gene	2144249	2145073	.	+	.	ID=gene-uspE;Name=uspE;gbkey=Gene;gene=uspE;gene_biotype=protein_coding;gene_synonym=ML1769
AL450380.1	EMBL	CDS	2144249	2145073	.	+	0	ID=cds-CAC30722.1;Parent=gene-uspE;Dbxref=GOA:Q9CBN7,InterPro:IPR000515,UniProtKB/TrEMBL:Q9CBN7,NCBI_GP:CAC30722.1;Name=CAC30722.1;Note=Similar to M. tuberculosis Rv2317 TR:P71895 (EMBL:Z79702) (274 aa)%3B Fasta score E(): 0%2C 85.0%25 identity in 274 aa overlap probable sugar transport protein uspE%2C and to many others e.g. Thermomonospora fusca cellobiose transport permease bglB TR:AAF37729 (EMBL:AF086819) (305 aa)%3B Fasta score E(): 1.9e-24%2C 30.2%25 identity in 275 aa overlap. Contains Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component.%3B~Similar to ML1425 and ML1088;gbkey=CDS;gene=uspE;product=sugar transport integral membrane protein;protein_id=CAC30722.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2144723	2144953	.	+	.	ID=id-uspE;Note=Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component%2C score 47.50%2C E-value 2.9e-10;gbkey=misc_feature;gene=uspE
AL450380.1	EMBL	gene	2145165	2146505	.	+	.	ID=gene-uspC;Name=uspC;gbkey=Gene;gene=uspC;gene_biotype=protein_coding;gene_synonym=ML1770
AL450380.1	EMBL	CDS	2145165	2146505	.	+	0	ID=cds-CAC30723.1;Parent=gene-uspC;Dbxref=GOA:Q9CBN6,InterPro:IPR006059,UniProtKB/TrEMBL:Q9CBN6,NCBI_GP:CAC30723.1;Name=CAC30723.1;Note=Similar to M. tuberculosis RV2318 TR:P71894 (EMBL:Z79702) (440 aa)%3B Fasta score E(): 0%2C 74.7%25 identity in 446 aa overlap probable sugar transport periplasmic binding protein uspC and to many others e.g. Alicyclobacillus acidocaldarius maltose binding protein precursor TR:Q9RHZ6 (EMBL:AJ252161) (427 aa)%3B Fasta score E(): 3.8e-05%2C 22.2%25 identity in 347 aa overlap. Contains probable signal sequence. Contains Pfam match to entry PF01547 SBP_bacterial_1%2C Bacterial extracellular solute-binding protein.%3B~Similar to ML1427;gbkey=CDS;gene=uspC;product=sugar transport periplasmic binding protein;protein_id=CAC30723.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2145582	2146490	.	+	.	ID=id-uspC;Note=Pfam match to entry PF01547 SBP_bacterial_1%2C Bacterial extracellular solute-binding protein%2C score 175.30%2C E-value 1e-48;gbkey=misc_feature;gene=uspC
AL450380.1	EMBL	pseudogene	2146514	2147336	.	-	.	ID=gene-ML1771;Name=ML1771;gbkey=Gene;gene=ML1771;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2146514	2147336	.	-	0	ID=cds-ML1771;Parent=gene-ML1771;Note=Possible pseudogene of M. tuberculosis orthologue Rv2319c (Best blastx score 252);gbkey=CDS;gene=ML1771;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2147413	2148614	.	-	.	ID=gene-rocE;Name=rocE;gbkey=Gene;gene=rocE;gene_biotype=pseudogene;gene_synonym=ML1772;pseudo=true
AL450380.1	EMBL	CDS	2147413	2148614	.	-	0	ID=cds-rocE;Parent=gene-rocE;Note=Possible pseudogene of M. tuberculosis orthologue rocE (Best blastx score 518);gbkey=CDS;gene=rocE;product=arginine/ornithine transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2148753	2149224	.	-	.	ID=gene-rocD2;Name=rocD2;gbkey=Gene;gene=rocD2;gene_biotype=pseudogene;gene_synonym=ML1773;pseudo=true
AL450380.1	EMBL	CDS	2148753	2149224	.	-	0	ID=cds-rocD2;Parent=gene-rocD2;Note=Possible pseudogene of M. tuberculosis orthologue rocD2 (Best blastx score 246);gbkey=CDS;gene=rocD2;product=ornithine aminotransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2149249	2149869	.	-	.	ID=gene-rocD1;Name=rocD1;gbkey=Gene;gene=rocD1;gene_biotype=pseudogene;gene_synonym=ML1774;pseudo=true
AL450380.1	EMBL	CDS	2149249	2149869	.	-	0	ID=cds-rocD1;Parent=gene-rocD1;Note=Possible pseudogene of M. tuberculosis orthologue rocD1 (Best blastx score 214);gbkey=CDS;gene=rocD1;product=ornithine aminotransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2149920	2150537	.	-	.	ID=gene-ML1775;Name=ML1775;gbkey=Gene;gene=ML1775;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2149920	2150537	.	-	0	ID=cds-ML1775;Parent=gene-ML1775;Note=Possible pseudogene of M. tuberculosis orthologue Rv2323c (Best blastx score 122);gbkey=CDS;gene=ML1775;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2150629	2151077	.	+	.	ID=gene-ML1776;Name=ML1776;gbkey=Gene;gene=ML1776;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2150629	2151077	.	+	0	ID=cds-ML1776;Parent=gene-ML1776;Note=Possible pseudogene of M. tuberculosis orthologue Rv2324 (Best blastx score 201);gbkey=CDS;gene=ML1776;product=transcriptional regulator (Lrp/AsnC family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2152252	2153069	.	+	.	ID=id-AL450380.1:2152252..2153069;Note=Dispersed repeat%2C RLEP%2C copy 30;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2153061	2154492	.	-	.	ID=gene-glpD1;Name=glpD1;gbkey=Gene;gene=glpD1;gene_biotype=pseudogene;gene_synonym=ML1777;pseudo=true
AL450380.1	EMBL	CDS	2153061	2154492	.	-	0	ID=cds-glpD1;Parent=gene-glpD1;Note=Possible pseudogene of M. tuberculosis orthologue glpD1 (Best blastx score 420);gbkey=CDS;gene=glpD1;product=glycerol-3-phosphate dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2154515	2155153	.	-	.	ID=gene-ML1778;Name=ML1778;gbkey=Gene;gene=ML1778;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2154515	2155153	.	-	0	ID=cds-ML1778;Parent=gene-ML1778;Note=Possible pseudogene of M. tuberculosis orthologue Rv2250c (Best blastx score 307);gbkey=CDS;gene=ML1778;product=putative transcriptional regulator (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2155432	2156718	.	+	.	ID=gene-ML1779;Name=ML1779;gbkey=Gene;gene=ML1779;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2155432	2156718	.	+	0	ID=cds-ML1779;Parent=gene-ML1779;Note=Possible pseudogene of M. tuberculosis orthologue Rv2251 (Best blastx score 327);gbkey=CDS;gene=ML1779;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2156718	2157659	.	+	.	ID=gene-ML1780;Name=ML1780;gbkey=Gene;gene=ML1780;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2156718	2157659	.	+	0	ID=cds-ML1780;Parent=gene-ML1780;Note=Possible pseudogene of M. tuberculosis orthologue Rv2252 (Best blastx score 590);gbkey=CDS;gene=ML1780;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2157673	2158185	.	-	.	ID=gene-ML1781;Name=ML1781;gbkey=Gene;gene=ML1781;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2157673	2158185	.	-	0	ID=cds-CAC30734.1;Parent=gene-ML1781;Dbxref=InterPro:IPR021491,UniProtKB/TrEMBL:Q9CBN5,NCBI_GP:CAC30734.1;Name=CAC30734.1;Note=Similar to M. tuberculosis Rv2256c TR:O53530 (EMBL:AL021925) (177 aa)%3B Fasta score E(): 0%2C 93.5%25 identity in 170 aa overlap%2C and to other hypothetical preoteins e.g. TR:Q54209 (EMBL:L43074) (164 aa)%3B Fasta score E(): 3.8e-27%2C 46.9%25 identity in 162 aa overlap unknown ORF downstream of Streptomyces glaucescens fabB.;gbkey=CDS;gene=ML1781;product=conserved hypothetical protein;protein_id=CAC30734.1;transl_table=11
AL450380.1	EMBL	gene	2158324	2159145	.	-	.	ID=gene-ML1782;Name=ML1782;gbkey=Gene;gene=ML1782;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2158324	2159145	.	-	0	ID=cds-CAC30735.1;Parent=gene-ML1782;Dbxref=InterPro:IPR001466,InterPro:IPR012338,UniProtKB/TrEMBL:Q9CBN4,NCBI_GP:CAC30735.1;Name=CAC30735.1;Note=Similar to M. tuberculosis Rv2257c TR:O53531 (EMBL:AL021925) (272 aa)%3B Fasta score E(): 0%2C 76.4%25 identity in 271 aa overlap%2C and to Streptomyces coelicolor SC4A7.08 TR:Q9RDQ4 (EMBL:AL133423) (273 aa)%3B Fasta score E(): 0%2C 53.2%25 identity in 269 aa overlap.;gbkey=CDS;gene=ML1782;product=conserved hypothetical protein;protein_id=CAC30735.1;transl_table=11
AL450380.1	EMBL	gene	2159145	2160113	.	-	.	ID=gene-ML1783;Name=ML1783;gbkey=Gene;gene=ML1783;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2159145	2160113	.	-	0	ID=cds-CAC30736.1;Parent=gene-ML1783;Dbxref=InterPro:IPR025714,InterPro:IPR029063,UniProtKB/TrEMBL:Q9CBN3,NCBI_GP:CAC30736.1;Name=CAC30736.1;Note=Similar to M. tuberculosis Rv2258c TR:O53532 (EMBL:AL021925) (353 aa)%3B Fasta score E(): 0%2C 65.2%25 identity in 273 aa overlap but shorter at N-terminus and frameshifted near C-terminus. Also similar to some C. elegans proteins e.g. TR:O01593 (EMBL:U97004) (365 aa)%3B Fasta score E(): 7.5e-17%2C 25.1%25 identity in 303 aa overlap. Contains a probable helix-turn-helix motif at aa 7-28 (Score 1191%2C SD +3.24);gbkey=CDS;gene=ML1783;product=putative transcriptional regulator;protein_id=CAC30736.1;transl_table=11
AL450380.1	EMBL	gene	2160275	2161360	.	+	.	ID=gene-adhE2;Name=adhE2;gbkey=Gene;gene=adhE2;gene_biotype=protein_coding;gene_synonym=ML1784
AL450380.1	EMBL	CDS	2160275	2161360	.	+	0	ID=cds-CAC30737.1;Parent=gene-adhE2;Dbxref=GOA:Q9CBN2,InterPro:IPR002085,InterPro:IPR002328,InterPro:IPR011032,InterPro:IPR013149,InterPro:IPR013154,InterPro:IPR016040,InterPro:IPR017816,UniProtKB/TrEMBL:Q9CBN2,NCBI_GP:CAC30737.1;Name=CAC30737.1;Note=Similar to M. tuberculosis adhE2 Rv2259 TR:O53533 (EMBL:AL021925) (361 aa)%3B Fasta score E(): 0%2C 88.9%25 identity in 361 aa overlap%2C and to other alcohol dehydrogenases e.g. Amycolatopsis methanolica NAD/mycothiol-dependent formaldehyde dehydrogenase SW:FADH_AMYME (P80094) (360 aa)%3B Fasta score E(): 0%2C 80.4%25 identity in 358 aa overlap. Contains Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases. Contains PS00190 Cytochrome c family heme-binding site signature. Contains PS00059 Zinc-containing alcohol dehydrogenases signature.%3B~Similar to ML1730 and ML2053;gbkey=CDS;gene=adhE2;product=putative alcohol dehydrogenase (Zn dependent);protein_id=CAC30737.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2160293	2161354	.	+	.	ID=id-adhE2;Note=Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases%2C score 293.40%2C E-value 2.9e-84;gbkey=misc_feature;gene=adhE2
AL450380.1	EMBL	sequence_feature	2160389	2160406	.	+	.	ID=id-adhE2-2;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;gene=adhE2
AL450380.1	EMBL	sequence_feature	2160458	2160502	.	+	.	ID=id-adhE2-3;Note=PS00059 Zinc-containing alcohol dehydrogenases signature;gbkey=misc_feature;gene=adhE2
AL450380.1	EMBL	pseudogene	2161357	2161598	.	+	.	ID=gene-ML1785;Name=ML1785;gbkey=Gene;gene=ML1785;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2161357	2161598	.	+	0	ID=cds-ML1785;Parent=gene-ML1785;Note=Possible pseudogene of M. tuberculosis orthologue Rv2260 hypothetical protein Rv2260;gbkey=CDS;gene=ML1785;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2161575	2162119	.	+	.	ID=id-AL450380.1:2161575..2162119;Note=REPLEP region 12%2C 3'-end most similar to REPLEP 7;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	2161575	2161999	.	+	.	ID=id-AL450380.1:2161575..2161999;Note=Dispersed repeat%2C REPLEP%2C copy 12%2C truncated at 5'-end;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	2162000	2162037	.	+	.	ID=id-AL450380.1:2162000..2162037;Note=38 bp subsequence of 45 bp REPLEP associated sequence;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	2162038	2162119	.	+	.	ID=id-AL450380.1:2162038..2162119;Note=38 bp subsequence of 45 bp REPLEP associated sequence;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2162529	2162830	.	-	.	ID=gene-ML1786;Name=ML1786;gbkey=Gene;gene=ML1786;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2162529	2162830	.	-	0	ID=cds-ML1786;Parent=gene-ML1786;Note=Possible pseudogene of M. tuberculosis orthologue Rv2261c (Best blastx score 202);gbkey=CDS;gene=ML1786;product=apolipoprotein N-acyltransferase-a (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2163095	2163380	.	+	.	ID=gene-ML1787;Name=ML1787;gbkey=Gene;gene=ML1787;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2163095	2163380	.	+	0	ID=cds-ML1787;Parent=gene-ML1787;Note=Possible pseudogene of M. tuberculosis orthologue Rv2266 (Best blastx score 246);gbkey=CDS;gene=ML1787;product=Probable cytochrome P-450 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2163355	2163819	.	-	.	ID=gene-ML1788;Name=ML1788;gbkey=Gene;gene=ML1788;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2163355	2163819	.	-	0	ID=cds-CAC30741.1;Parent=gene-ML1788;Dbxref=UniProtKB/TrEMBL:Q7AQ24,NCBI_GP:CAC30741.1;Name=CAC30741.1;Note=questionable CDS (possible pseudogene?).;gbkey=CDS;gene=ML1788;product=very hypothetical protein;protein_id=CAC30741.1;transl_table=11
AL450380.1	EMBL	pseudogene	2164144	2164494	.	+	.	ID=gene-ML1789;Name=ML1789;gbkey=Gene;gene=ML1789;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2164144	2164494	.	+	0	ID=cds-ML1789;Parent=gene-ML1789;Note=Possible pseudogene of M. tuberculosis orthologue Rv2272 (Best blastx score 221);gbkey=CDS;gene=ML1789;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2164515	2164813	.	+	.	ID=gene-ML1790;Name=ML1790;gbkey=Gene;gene=ML1790;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2164515	2164813	.	+	0	ID=cds-ML1790;Parent=gene-ML1790;Note=Possible pseudogene of M. tuberculosis orthologue Rv2273 (Best blastx score 80);gbkey=CDS;gene=ML1790;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2165620	2166063	.	-	.	ID=gene-ML1791;Name=ML1791;gbkey=Gene;gene=ML1791;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2165620	2166063	.	-	0	ID=cds-CAC30744.1;Parent=gene-ML1791;Dbxref=InterPro:IPR010298,UniProtKB/TrEMBL:Q9CBN1,NCBI_GP:CAC30744.1;Name=CAC30744.1;Note=Similar to M. tuberculosis hypothetical protein Rv1976c TR:O53977 (EMBL:AL022073) (135 aa)%3B Fasta score E(): 3.5e-28%2C 65.3%25 identity in 124 aa overlap%2C and to Streptomyces coelicolor hypothetical protein SC1C3.03C TR:O69845 (EMBL:AL023702) (125 aa)%3B Fasta score E(): 4.3e-06%2C 36.6%25 identity in 112 aa overlap.;gbkey=CDS;gene=ML1791;product=conserved hypothetical protein;protein_id=CAC30744.1;transl_table=11
AL450380.1	EMBL	pseudogene	2166747	2168336	.	+	.	ID=gene-yjcE;Name=yjcE;gbkey=Gene;gene=yjcE;gene_biotype=pseudogene;gene_synonym=ML1792;pseudo=true
AL450380.1	EMBL	CDS	2166747	2168336	.	+	0	ID=cds-yjcE;Parent=gene-yjcE;Note=Possible pseudogene of M. tuberculosis orthologue yjcE (Best blastx score 885);gbkey=CDS;gene=yjcE;product=probable Na+/H+ exchanger (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2169013	2169318	.	+	.	ID=gene-ML1793;Name=ML1793;gbkey=Gene;gene=ML1793;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2169013	2169318	.	+	0	ID=cds-CAC30746.1;Parent=gene-ML1793;Dbxref=UniProtKB/TrEMBL:Q9CBN0,NCBI_GP:CAC30746.1;Name=CAC30746.1;Note=unknown.;gbkey=CDS;gene=ML1793;product=hypothetical protein;protein_id=CAC30746.1;transl_table=11
AL450380.1	EMBL	gene	2171512	2172720	.	+	.	ID=gene-ML1794;Name=ML1794;gbkey=Gene;gene=ML1794;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2171512	2172720	.	+	0	ID=cds-CAC30747.1;Parent=gene-ML1794;Dbxref=GOA:Q9CBM9,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,NCBI_GP:CAC30747.1;Name=CAC30747.1;Note=Similar to M. tuberculosis predicted aminotransferase Rv2294 SW:YM94_MYCTU (Q50672) (407 aa)%3B Fasta score E(): 0%2C 76.5%25 identity in 404 aa overlap%2C and to many others e.g. Escherichia coli MalY protein SW:MALY_ECOLI (P23256) (390 aa)%3B Fasta score E(): 5.8e-27%2C 31.2%25 identity in 385 aa overlap.%3B~Similar to and ML2502;gbkey=CDS;gene=ML1794;product=aminotransferase;protein_id=CAC30747.1;transl_table=11
AL450380.1	EMBL	gene	2174297	2174743	.	+	.	ID=gene-hsp18;Name=hsp18;gbkey=Gene;gene=hsp18;gene_biotype=protein_coding;gene_synonym=ML1795
AL450380.1	EMBL	CDS	2174297	2174743	.	+	0	ID=cds-CAC30748.1;Parent=gene-hsp18;Dbxref=InterPro:IPR002068,InterPro:IPR008978,NCBI_GP:CAC30748.1;Name=CAC30748.1;Note=previously sequenced as SW:18KD_MYCLE (P12809) (148 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 148 aa overlap%3B similar to other mycobacterial antigens e.g. Mycobacterium intracellulare SW:18K1_MYCIT (P46730) (149 aa)%3B Fasta score E(): 0%2C 78.7%25 identity in 150 aa overlap%2C and small heat shock proteins e.g. Streptomyces albus hsp18 SW:HS18_STRAL (Q53595) (143 aa)%3B Fasta score E(): 4.1e-26%2C 55.0%25 identity in 140 aa overlap. Contains Pfam match to entry PF00011 HSP20%2C Hsp20/alpha crystallin family.;gbkey=CDS;gene=hsp18;product=18 KDA antigen (HSP 16.7);protein_id=CAC30748.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2174369	2174683	.	+	.	ID=id-hsp18;Note=Pfam match to entry PF00011 HSP20%2C Hsp20/alpha crystallin family%2C score 108.20%2C E-value 7.9e-29;gbkey=misc_feature;gene=hsp18
AL450380.1	EMBL	gene	2175302	2175715	.	+	.	ID=gene-ML1796;Name=ML1796;gbkey=Gene;gene=ML1796;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2175302	2175715	.	+	0	ID=cds-CAC30749.1;Parent=gene-ML1796;Dbxref=NCBI_GP:CAC30749.1;Name=CAC30749.1;Note=previously sequenced as SW:Y15K_MYCLE (P13733) (137 aa)%3B Fasta score E(): 0%2C 100.0%25 identity in 137 aa overlap.%3B~Similar to and;gbkey=CDS;gene=ML1796;product=hypothetical protein;protein_id=CAC30749.1;transl_table=11
AL450380.1	EMBL	pseudogene	2176410	2176778	.	-	.	ID=gene-lipL;Name=lipL;gbkey=Gene;gene=lipL;gene_biotype=pseudogene;gene_synonym=ML1797;pseudo=true
AL450380.1	EMBL	CDS	2176410	2176778	.	-	0	ID=cds-lipL;Parent=gene-lipL;Note=Possible pseudogene similar to M. tuberculosis orthologue lipL (Best blastx score 94);gbkey=CDS;gene=lipL;product=probable esterase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2176919	2177902	.	-	.	ID=gene-ML1798;Name=ML1798;gbkey=Gene;gene=ML1798;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2176919	2177902	.	-	0	ID=cds-CAC30751.1;Parent=gene-ML1798;Dbxref=GOA:Q9CBM8,InterPro:IPR005129,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CBM8,NCBI_GP:CAC30751.1;Name=CAC30751.1;Note=Similar to M. tuberculosis Rv1496 SW:YE96_MYCTU (P71777) (334 aa)%3B Fasta score E(): 0%2C 83.0%25 identity in 323 aa overlap and to other members of the argK family e.g. SW:ARGK_ECOLI (P27254) (331 aa)%3B Fasta score E(): 0%2C 44.9%25 identity in 321 aa overlap LAO/AO transport system kinase. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML1798;product=putative kinase;protein_id=CAC30751.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2177699	2177722	.	-	.	ID=id-ML1798;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1798
AL450380.1	EMBL	gene	2177903	2180179	.	-	.	ID=gene-mutB;Name=mutB;gbkey=Gene;gene=mutB;gene_biotype=protein_coding;gene_synonym=ML1799
AL450380.1	EMBL	CDS	2177903	2180179	.	-	0	ID=cds-CAC30752.1;Parent=gene-mutB;Dbxref=GOA:Q9CBM7,InterPro:IPR006098,InterPro:IPR006099,InterPro:IPR006158,InterPro:IPR006159,InterPro:IPR014348,InterPro:IPR016176,UniProtKB/TrEMBL:Q9CBM7,NCBI_GP:CAC30752.1;Name=CAC30752.1;Note=Similar to M. tuberculosis mutB SW:MUTB_MYCTU (P71774) (750 aa)%3B Fasta score E(): 0%2C 88.9%25 identity in 748 aa overlap%2C and many other methylmalonyl-CoA mutase alpha-subunit e.g. Streptomyces cinnamonensis SW:MUTB_STRCM (Q05065) (733 aa)%3B Fasta score E(): 0%2C 74.7%25 identity in 726 aa overlap. Contains Pfam match to entry PF01642 MM_CoA_mutase%2C Methylmalonyl-CoA mutase. Contains PS00544 Methylmalonyl-CoA mutase signature.%3B~Similar to and ML1800;gbkey=CDS;gene=mutB;product=methylmalonyl-CoA mutase%2C [alpha] subunit;protein_id=CAC30752.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2178413	2179879	.	-	.	ID=id-mutB;Note=Pfam match to entry PF01642 MM_CoA_mutase%2C Methylmalonyl-CoA mutase%2C score 1090.80%2C E-value 0;gbkey=misc_feature;gene=mutB
AL450380.1	EMBL	sequence_feature	2178884	2178961	.	-	.	ID=id-mutB-2;Note=PS00544 Methylmalonyl-CoA mutase signature;gbkey=misc_feature;gene=mutB
AL450380.1	EMBL	gene	2180185	2182095	.	-	.	ID=gene-mutA;Name=mutA;gbkey=Gene;gene=mutA;gene_biotype=protein_coding;gene_synonym=ML1800
AL450380.1	EMBL	CDS	2180185	2182095	.	-	0	ID=cds-CAC30753.1;Parent=gene-mutA;Dbxref=GOA:Q9CBM6,InterPro:IPR004608,InterPro:IPR006099,InterPro:IPR006158,InterPro:IPR014348,InterPro:IPR016176,UniProtKB/TrEMBL:Q9CBM6,NCBI_GP:CAC30753.1;Name=CAC30753.1;Note=Similar to M. tuberculosis mutA SW:MUTA_MYCTU (P71773) (615 aa)%3B Fasta score E(): 0%2C 75.3%25 identity in 636 aa overlap%2C and many other methylmalonyl-CoA mutase beta-subunit e.g. Streptomyces cinnamonensis SW:SW:MUTA_STRCM (Q05064) (616 aa)%3B Fasta score E(): 0%2C 42.7%25 identity in 626 aa overlap. Contains Pfam match to entry PF01642 MM_CoA_mutase%2C Methylmalonyl-CoA mutase. Contains PS00544 Methylmalonyl-CoA mutase signature.%3B~Similar to and ML1799;gbkey=CDS;gene=mutA;product=methylmalonyl-CoA mutase%2C [beta] subunit;protein_id=CAC30753.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2180467	2181921	.	-	.	ID=id-mutA;Note=Pfam match to entry PF01642 MM_CoA_mutase%2C Methylmalonyl-CoA mutase%2C score 552.10%2C E-value 3.6e-162;gbkey=misc_feature;gene=mutA
AL450380.1	EMBL	sequence_feature	2180905	2180982	.	-	.	ID=id-mutA-2;Note=PS00544 Methylmalonyl-CoA mutase signature;gbkey=misc_feature;gene=mutA
AL450380.1	EMBL	pseudogene	2182285	2182970	.	+	.	ID=gene-ML1801;Name=ML1801;gbkey=Gene;gene=ML1801;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2182285	2182970	.	+	0	ID=cds-ML1801;Parent=gene-ML1801;Note=Possible pseudogene of M. tuberculosis orthologue Rv1491c (Best blastx score 268);gbkey=CDS;gene=ML1801;product=probable membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2183195	2184319	.	-	.	ID=gene-ML1802;Name=ML1802;gbkey=Gene;gene=ML1802;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2183195	2184319	.	-	0	ID=cds-CAC30755.1;Parent=gene-ML1802;Dbxref=GOA:Q9CBM5,InterPro:IPR001107,InterPro:IPR001972,InterPro:IPR018080,UniProtKB/TrEMBL:Q9CBM5,NCBI_GP:CAC30755.1;Name=CAC30755.1;Note=Similar to M. tuberculosis Rv1488 SW:YE88_MYCTU (P71768) (381 aa)%3B Fasta score E(): 0%2C 89.8%25 identity in 373 aa overlap%2C and to many others members of the BAND 7 / MEC-2 family e.g. Streptomyces coelicolor conserved hypothetical protein SCI5.04C TR:Q9X9Z6 (EMBL:AL079332) (319 aa)%3B Fasta score E(): 0%2C 54.7%25 identity in 311 aa overlap. Contains Pfam match to entry PF01145 Band_7%2C SPFH domain / Band 7 family. Contains PS00024 Hemopexin domain signature. Contains PS01270 Band 7 protein family signature.;gbkey=CDS;gene=ML1802;product=conserved hypothetical protein;protein_id=CAC30755.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2183408	2183452	.	-	.	ID=id-ML1802;Note=PS00024 Hemopexin domain signature;gbkey=misc_feature;gene=ML1802
AL450380.1	EMBL	sequence_feature	2183717	2184289	.	-	.	ID=id-ML1802-2;Note=Pfam match to entry PF01145 Band_7%2C SPFH domain / Band 7 family%2C score 329.50%2C E-value 3.8e-95;gbkey=misc_feature;gene=ML1802
AL450380.1	EMBL	sequence_feature	2183822	2183908	.	-	.	ID=id-ML1802-3;Note=PS01270 Band 7 protein family signature;gbkey=misc_feature;gene=ML1802
AL450380.1	EMBL	gene	2184356	2184787	.	-	.	ID=gene-ML1803;Name=ML1803;gbkey=Gene;gene=ML1803;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2184356	2184787	.	-	0	ID=cds-CAC30756.1;Parent=gene-ML1803;Dbxref=InterPro:IPR002810,InterPro:IPR012340,UniProtKB/TrEMBL:Q9CBM4,NCBI_GP:CAC30756.1;Name=CAC30756.1;Note=Similar to M. tuberculosis Rv1487 TR:P71767 (EMBL:Z79701) (144 aa)%3B Fasta score E(): 0%2C 74.8%25 identity in 143 aa overlap%2C and to many others e.g. Streptomyces coelicolor putative integral membrane protein SCI5.05C TR:Q9X9Z5 (EMBL:AL079332) (143 aa)%3B Fasta score E(): 1.3e-12%2C 42.3%25 identity in 137 aa overlap.;gbkey=CDS;gene=ML1803;product=conserved hypothetical protein;protein_id=CAC30756.1;transl_table=11
AL450380.1	EMBL	gene	2184845	2185741	.	+	.	ID=gene-ML1804;Name=ML1804;gbkey=Gene;gene=ML1804;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2184845	2185741	.	+	0	ID=cds-CAC30757.1;Parent=gene-ML1804;Dbxref=NCBI_GP:CAC30757.1;Name=CAC30757.1;Note=Similar to M. tuberculosis Rv1486c SW:YE86_MYCTU (P71766) (302 aa)%3B Fasta score E(): 5.1e-25%2C 76.7%25 identity in 300 aa overlap%2C and to Mycobacterium avium hypothetical protein MAV321 SW:YE86_MYCAV (O07402) (320 aa)%3B Fasta score E(): 0%2C 62.9%25 identity in 315 aa overlap.;gbkey=CDS;gene=ML1804;product=conserved hypothetical protein;protein_id=CAC30757.1;transl_table=11
AL450380.1	EMBL	gene	2185778	2186788	.	-	.	ID=gene-hemZ;Name=hemZ;gbkey=Gene;gene=hemZ;gene_biotype=protein_coding;gene_synonym=ML1805
AL450380.1	EMBL	CDS	2185778	2186788	.	-	0	ID=cds-CAC30758.1;Parent=gene-hemZ;Dbxref=GOA:Q9CBM2,InterPro:IPR001015,InterPro:IPR019772,NCBI_GP:CAC30758.1;Name=CAC30758.1;Note=Similar to M. tuberculosis hemZ SW:HEMZ_MYCTU (P71765) (344 aa)%3B Fasta score E(): 0%2C 76.8%25 identity in 336 aa overlap%2C and to many others e.g. Propionibacterium freudenreichii shermanii ferrochelatase SW:HEMZ_PROFR (P72183) (352 aa)%3B Fasta score E(): 0%2C 38.9%25 identity in 311 aa overlap. Contains Pfam match to entry PF00762 Ferrochelatase%2C Ferrochelatase. Contains PS00534 Ferrochelatase signature.;gbkey=CDS;gene=hemZ;product=ferrochelatase;protein_id=CAC30758.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2185877	2186770	.	-	.	ID=id-hemZ;Note=Pfam match to entry PF00762 Ferrochelatase%2C Ferrochelatase%2C score 92.30%2C E-value 9.9e-24;gbkey=misc_feature;gene=hemZ
AL450380.1	EMBL	sequence_feature	2186216	2186278	.	-	.	ID=id-hemZ-2;Note=PS00534 Ferrochelatase signature;gbkey=misc_feature;gene=hemZ
AL450380.1	EMBL	gene	2186795	2187604	.	-	.	ID=gene-inhA;Name=inhA;gbkey=Gene;gene=inhA;gene_biotype=protein_coding;gene_synonym=ML1806
AL450380.1	EMBL	CDS	2186795	2187604	.	-	0	ID=cds-CAC30759.1;Parent=gene-inhA;Dbxref=GOA:Q9CBM1,InterPro:IPR014358,InterPro:IPR016040,PDB:2NTV,UniProtKB/TrEMBL:Q9CBM1,NCBI_GP:CAC30759.1;Name=CAC30759.1;Note=Similar to M. tuberculosis inhA Rv1484 SW:INHA_MYCTU (P46533) (269 aa)%3B Fasta score E(): 0%2C 90.3%25 identity in 269 aa overlap%2C and to many others e.g. Escherichia coli enoyl-[acyl-carrier-protein] reductase [NADH] SW:FABI_ECOLI (P29132) (261 aa)%3B Fasta score E(): 1.2e-17%2C 33.2%25 identity in 268 aa overlap.%3B~Similar to and ML1807;gbkey=CDS;gene=inhA;product=enoyl-[ACP] reductase;protein_id=CAC30759.1;transl_table=11
AL450380.1	EMBL	gene	2187634	2188395	.	-	.	ID=gene-fabG1;Name=fabG1;gbkey=Gene;gene=fabG1;gene_biotype=protein_coding;gene_synonym=ML1807
AL450380.1	EMBL	CDS	2187634	2188395	.	-	0	ID=cds-CAC30760.1;Parent=gene-fabG1;Dbxref=GOA:Q9CBM0,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:Q9CBM0,NCBI_GP:CAC30760.1;Name=CAC30760.1;Note=Similar to M. tuberculosis fabG Rv1483 SW:FABG_MYCTU (Q48930) (247 aa)%3B Fasta score E(): 0%2C 68.6%25 identity in 245 aa overlap%2C and to many others e.g. Escherichia coli fabG 3-oxoacyl-[acyl-carrier protein] reductase SW:FABG_ECOLI (P25716) (244 aa)%3B Fasta score E(): 0%2C 47.3%25 identity in 241 aa overlap. Contains Pfam match to entry PF00678 adh_short_C2%2C Short chain dehydrogenase/reductase C-terminus. Contains Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase. Contains PS00061 Short-chain dehydrogenases/reductases family signature.%3B~Similar to ML1806%2C ML2565%2C ML1740%2C ML1094%2C ML0862%2C ML0135%2C ML0135%2C ML0429%2C ML2357%2C ML0108 and ML2059;gbkey=CDS;gene=fabG1;product=3-oxoacyl-[ACP] reductase (aka MabA);protein_id=CAC30760.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2187661	2187753	.	-	.	ID=id-fabG1;Note=Pfam match to entry PF00678 adh_short_C2%2C Short chain dehydrogenase/reductase C-terminus%2C score 51.30%2C E-value 6.7e-13;gbkey=misc_feature;gene=fabG1
AL450380.1	EMBL	sequence_feature	2187811	2188332	.	-	.	ID=id-fabG1-2;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 202.20%2C E-value 8e-57;gbkey=misc_feature;gene=fabG1
AL450380.1	EMBL	sequence_feature	2187874	2187960	.	-	.	ID=id-fabG1-3;Note=PS00061 Short-chain dehydrogenases/reductases family signature;gbkey=misc_feature;gene=fabG1
AL450380.1	EMBL	gene	2188468	2189475	.	-	.	ID=gene-ML1808;Name=ML1808;gbkey=Gene;gene=ML1808;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2188468	2189475	.	-	0	ID=cds-CAC30761.1;Parent=gene-ML1808;Dbxref=GOA:Q9CBL9,InterPro:IPR002035,InterPro:IPR022933,NCBI_GP:CAC30761.1;Name=CAC30761.1;Note=Similar to M. tuberculosis Rv1481 SW:YE81_MYCTU (P71762) (335 aa)%3B Fasta score E(): 0%2C 91.0%25 identity in 335 aa overlap. Contains Pfam match to entry PF00092 vwa%2C von Willebrand factor type A domain.%3B~Similar to and ML0701;gbkey=CDS;gene=ML1808;product=possible membrane protein;protein_id=CAC30761.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2188657	2189181	.	-	.	ID=id-ML1808;Note=Pfam match to entry PF00092 vwa%2C von Willebrand factor type A domain%2C score -9.70%2C E-value 0.0049;gbkey=misc_feature;gene=ML1808
AL450380.1	EMBL	gene	2189519	2190481	.	-	.	ID=gene-ML1809;Name=ML1809;gbkey=Gene;gene=ML1809;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2189519	2190481	.	-	0	ID=cds-CAC30762.1;Parent=gene-ML1809;Dbxref=InterPro:IPR002881,UniProtKB/TrEMBL:Q9CBL8,NCBI_GP:CAC30762.1;Name=CAC30762.1;Note=Similar to M. tuberculosis Rv1480 SW:YE80_MYCTU (P71761) (317 aa)%3B Fasta score E(): 0%2C 87.5%25 identity in 311 aa overlap. Contains Pfam match to entry PF01882 DUF58%2C Protein of unknown function.;gbkey=CDS;gene=ML1809;product=conserved hypothetical protein;protein_id=CAC30762.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2189945	2190460	.	-	.	ID=id-ML1809;Note=Pfam match to entry PF01882 DUF58%2C Protein of unknown function%2C score 169.50%2C E-value 5.4e-47;gbkey=misc_feature;gene=ML1809
AL450380.1	EMBL	gene	2190478	2191611	.	-	.	ID=gene-moxR;Name=moxR;gbkey=Gene;gene=moxR;gene_biotype=protein_coding;gene_synonym=ML1810
AL450380.1	EMBL	CDS	2190478	2191611	.	-	0	ID=cds-CAC30763.1;Parent=gene-moxR;Dbxref=GOA:Q9CBL7,InterPro:IPR011703,InterPro:IPR016366,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CBL7,NCBI_GP:CAC30763.1;Name=CAC30763.1;Note=Similar to M. tuberculosis moxR Rv1479 TR:O53170 (EMBL:AL021184) (377 aa)%3B Fasta score E(): 0%2C 90.2%25 identity in 377 aa overlap%2C to many other moxR homologs and to e.g. Pyrococcus abyssi MOXR-3 TR:Q9UZ67 (EMBL:AJ248287) (314 aa)%3B Fasta score E(): 0%2C 46.6%25 identity in 313 aa overlap. Contains Pfam match to entry PF01078 Mg_chelatase%2C Magnesium chelatase%2C subunit ChlI.;gbkey=CDS;gene=moxR;product=MoxR homolog;protein_id=CAC30763.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2190562	2191491	.	-	.	ID=id-moxR;Note=Pfam match to entry PF01078 Mg_chelatase%2C Magnesium chelatase%2C subunit ChlI%2C score -20.80%2C E-value 3.2e-07;gbkey=misc_feature;gene=moxR
AL450380.1	EMBL	gene	2191846	2192571	.	-	.	ID=gene-ML1811;Name=ML1811;gbkey=Gene;gene=ML1811;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2191846	2192571	.	-	0	ID=cds-CAC30764.1;Parent=gene-ML1811;Dbxref=InterPro:IPR000064,UniProtKB/TrEMBL:Q9CBL6,NCBI_GP:CAC30764.1;Name=CAC30764.1;Note=Similar to M. tuberculosis Rv1478 TR:O53169 (EMBL:AL021184) (241 aa)%3B Fasta score E(): 0%2C 77.1%25 identity in 240 aa overlap%2C and to Listeria innocua protein p60 precursor (invasion-associated protein) SW:P60_LISIN (Q01836) (481 aa)%3B Fasta score E(): 4.2e-07%2C 31.0%25 identity in 200 aa overlap. Contains Pfam match to entry PF00877 NLPC_P60%2C NLP/P60 family.%3B~Similar to ML1812%2C ML1214 and ML0885;gbkey=CDS;gene=ML1811;product=putative exported p60 protein homologue;protein_id=CAC30764.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2191849	2192217	.	-	.	ID=id-ML1811;Note=Pfam match to entry PF00877 NLPC_P60%2C NLP/P60 family%2C score 202.10%2C E-value 8.7e-57;gbkey=misc_feature;gene=ML1811
AL450380.1	EMBL	gene	2192598	2194037	.	-	.	ID=gene-ML1812;Name=ML1812;gbkey=Gene;gene=ML1812;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2192598	2194037	.	-	0	ID=cds-CAC30765.1;Parent=gene-ML1812;Dbxref=InterPro:IPR000064,UniProtKB/TrEMBL:Q9CBL5,NCBI_GP:CAC30765.1;Name=CAC30765.1;Note=Similar to M. tuberculosis Rv1477 TR:O53168 (EMBL:AL021184) (472 aa)%3B Fasta score E(): 0%2C 78.8%25 identity in 480 aa overlap and to Listeria innocua protein p60 precursor (invasion-associated protein) SW:P60_LISMO (P21171) (484 aa)%3B Fasta score E(): 1e-06%2C 23.8%25 identity in 491 aa overlap. Contains Pfam match to entry PF00877 NLPC_P60%2C NLP/P60 family.%3B~Similar to ML1811%2C ML1214 and ML0885;gbkey=CDS;gene=ML1812;product=putative exported p60 protein homologue;protein_id=CAC30765.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2192601	2192969	.	-	.	ID=id-ML1812;Note=Pfam match to entry PF00877 NLPC_P60%2C NLP/P60 family%2C score 189.30%2C E-value 6.1e-53;gbkey=misc_feature;gene=ML1812
AL450380.1	EMBL	gene	2194277	2194849	.	-	.	ID=gene-ML1813;Name=ML1813;gbkey=Gene;gene=ML1813;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2194277	2194849	.	-	0	ID=cds-CAC30766.1;Parent=gene-ML1813;Dbxref=UniProtKB/TrEMBL:Q9CBL4,NCBI_GP:CAC30766.1;Name=CAC30766.1;Note=Similar to M. tuberculosis hypothetical protein Rv1476 TR:O53167 (EMBL:AL021184) (186 aa)%3B Fasta score E(): 0%2C 78.7%25 identity in 178 aa overlap.;gbkey=CDS;gene=ML1813;product=conserved hypothetical protein;protein_id=CAC30766.1;transl_table=11
AL450380.1	EMBL	gene	2195132	2197966	.	+	.	ID=gene-acn;Name=acn;gbkey=Gene;gene=acn;gene_biotype=protein_coding;gene_synonym=ML1814
AL450380.1	EMBL	CDS	2195132	2197966	.	+	0	ID=cds-CAC30767.1;Parent=gene-acn;Dbxref=GOA:Q9CBL3,InterPro:IPR000573,InterPro:IPR001030,InterPro:IPR015928,InterPro:IPR015931,InterPro:IPR015932,InterPro:IPR015934,InterPro:IPR015937,InterPro:IPR018136,UniProtKB/TrEMBL:Q9CBL3,NCBI_GP:CAC30767.1;Name=CAC30767.1;Note=Similar to M. tuberculosis aconitate hydratase Rv1475c TR:O53166 (EMBL:AL021184) (943 aa)%3B Fasta score E(): 0%2C 86.8%25 identity in 948 aa overlap%2C and to many others e.g. Bacillus subtilis aconitate hydratase SW:ACON_BACSU (P09339) (908 aa)%3B Fasta score E(): 0%2C 51.1%25 identity in 940 aa overlap. Contains 2 Pfam matches to entry PF00330 aconitase%2C Aconitase family (aconitate hydratase). Contains Pfam match to entry PF00694 Aconitase_C%2C Aconitase C-terminal domain. Contains PS01244 Aconitase family signature 2. Contains PS00450 Aconitase family signature 1.%3B~Similar to and ML1685;gbkey=CDS;gene=acn;product=aconitate hydratase;protein_id=CAC30767.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2195300	2196313	.	+	.	ID=id-acn;Note=Pfam match to entry PF00330 aconitase%2C Aconitase family (aconitate hydratase)%2C score 504.40%2C E-value 1.5e-153;gbkey=misc_feature;gene=acn
AL450380.1	EMBL	sequence_feature	2196521	2196952	.	+	.	ID=id-acn-2;Note=Pfam match to entry PF00330 aconitase%2C Aconitase family (aconitate hydratase)%2C score 220.10%2C E-value 1.3e-66;gbkey=misc_feature;gene=acn
AL450380.1	EMBL	sequence_feature	2196545	2196595	.	+	.	ID=id-acn-3;Note=PS00450 Aconitase family signature 1;gbkey=misc_feature;gene=acn
AL450380.1	EMBL	sequence_feature	2196743	2196784	.	+	.	ID=id-acn-4;Note=PS01244 Aconitase family signature 2;gbkey=misc_feature;gene=acn
AL450380.1	EMBL	sequence_feature	2197334	2197867	.	+	.	ID=id-acn-5;Note=Pfam match to entry PF00694 Aconitase_C%2C Aconitase C-terminal domain%2C score 199.70%2C E-value 4.7e-56;gbkey=misc_feature;gene=acn
AL450380.1	EMBL	pseudogene	2197981	2198537	.	+	.	ID=gene-ML1815;Name=ML1815;gbkey=Gene;gene=ML1815;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2197981	2198537	.	+	0	ID=cds-ML1815;Parent=gene-ML1815;Note=Possible pseudogene of M. tuberculosis orthologue Rv1474c (Best blastx score 442);gbkey=CDS;gene=ML1815;product=transcriptional regulator (TetR/AcrR family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2198955	2200592	.	-	.	ID=gene-ML1816;Name=ML1816;gbkey=Gene;gene=ML1816;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2198955	2200592	.	-	0	ID=cds-CAC30769.1;Parent=gene-ML1816;Dbxref=GOA:Q9CBL2,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CBL2,NCBI_GP:CAC30769.1;Name=CAC30769.1;Note=Similar to M. tuberculosis Rv1473 TR:O53164 (EMBL:AL021184) (542 aa)%3B Fasta score E(): 0%2C 87.9%25 identity in 545 aa overlap%2C and to many others e.g. Haemophilus influenzae hypothetical ABC transporter ATP-binding protein SW:YHES_HAEIN (P44808) (638 aa)%3B Fasta score E(): 1.4e-30%2C 31.5%25 identity in 518 aa overlap. Contains 2 Pfam matches to entry PF00005 ABC_tran%2C ABC transporter. Contains 2 x PS00017 ATP/GTP-binding site motif A (P-loop). Contains 2 x PS00211 ABC transporters family signature.%3B~Similar to ML1248%2C ML0669%2C ML0848%2C ML2189%2C ML1122%2C ML0114 and ML0336;gbkey=CDS;gene=ML1816;product=ABC transporter ATP-binding protein%2C possibly in EF-3 subfamily;protein_id=CAC30769.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2199006	2199503	.	-	.	ID=id-ML1816;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 160.90%2C E-value 2.2e-44;gbkey=misc_feature;gene=ML1816
AL450380.1	EMBL	sequence_feature	2199183	2199227	.	-	.	ID=id-ML1816-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=ML1816
AL450380.1	EMBL	sequence_feature	2199459	2199482	.	-	.	ID=id-ML1816-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1816
AL450380.1	EMBL	sequence_feature	2199861	2200508	.	-	.	ID=id-ML1816-4;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 143.50%2C E-value 3.8e-39;gbkey=misc_feature;gene=ML1816
AL450380.1	EMBL	sequence_feature	2200065	2200109	.	-	.	ID=id-ML1816-5;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=ML1816
AL450380.1	EMBL	sequence_feature	2200464	2200487	.	-	.	ID=id-ML1816-6;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1816
AL450380.1	EMBL	pseudogene	2200629	2201450	.	-	.	ID=gene-echA12;Name=echA12;gbkey=Gene;gene=echA12;gene_biotype=pseudogene;gene_synonym=ML1817;pseudo=true
AL450380.1	EMBL	CDS	2200629	2201450	.	-	0	ID=cds-echA12;Parent=gene-echA12;Note=Possible pseudogene of M. tuberculosis orthologue echA12 (Best blastx score 581);gbkey=CDS;gene=echA12;product=enoyl-CoA hydratase/isomerase superfamily (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2201521	2201913	.	-	.	ID=gene-trxB;Name=trxB;gbkey=Gene;gene=trxB;gene_biotype=protein_coding;gene_synonym=ML1818
AL450380.1	EMBL	CDS	2201521	2201913	.	-	0	ID=cds-CAC30771.1;Parent=gene-trxB;Dbxref=GOA:Q9CBL1,InterPro:IPR005746,InterPro:IPR012336,InterPro:IPR013766,UniProtKB/TrEMBL:Q9CBL1,NCBI_GP:CAC30771.1;Name=CAC30771.1;Note=Similar to M. tuberculosis thioredoxin trxB Rv1471 TR:O53162 (EMBL:AL021184) (123 aa)%3B Fasta score E(): 2.4e-25%2C 65.4%25 identity in 107 aa overlap%2C and M. tuberculosis thioredoxin trxA Rv1470 TR:O53161 (EMBL:AL021184) (124 aa)%3B Fasta score E(): 1.6e-17%2C 47.0%25 identity in 117 aa overlap. Also similar to Escherichia coli thioredoxin 2 SW:THI2_ECOLI (P33636) (139 aa)%3B Fasta score E(): 1.7e-07%2C 37.1%25 identity in 89 aa overlap. Contains Pfam match to entry PF00085 thiored%2C Thioredoxin.%3B~Similar to and ML2703;gbkey=CDS;gene=trxB;product=thioredoxin;protein_id=CAC30771.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2201632	2201820	.	-	.	ID=id-trxB;Note=Pfam match to entry PF00085 thiored%2C Thioredoxin%2C score 38.40%2C E-value 3e-10;gbkey=misc_feature;gene=trxB
AL450380.1	EMBL	pseudogene	2201930	2202287	.	-	.	ID=gene-ctpD;Name=ctpD;gbkey=Gene;gene=ctpD;gene_biotype=pseudogene;gene_synonym=ML1819;pseudo=true
AL450380.1	EMBL	CDS	2201930	2202287	.	-	0	ID=cds-ctpD;Parent=gene-ctpD;Note=Possible pseudogene of M. tuberculosis orthologue Rv1469;gbkey=CDS;gene=ctpD;product=cation-transporting ATPase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2203039	2204006	.	+	.	ID=gene-ML1820;Name=ML1820;gbkey=Gene;gene=ML1820;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2203039	2204006	.	+	0	ID=cds-ML1820;Parent=gene-ML1820;Note=Possible pseudogene of M. tuberculosis orthologue Rv1319c (Best blastx score 265);gbkey=CDS;gene=ML1820;product=similar at C-term to adenylate cyclases (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2203983	2204566	.	+	.	ID=id-AL450380.1:2203983..2204566;Note=LEPRPT%2C copy 5%2C 605 bp identical to 3' part of LEPRPT. Last 50 bp only present in this copy and in one other at 1539935..1539886;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	2204517	2204566	.	+	.	ID=id-AL450380.1:2204517..2204566;Note=50 bp repeat%2C associated with only 2 copies of LEPRPT;gbkey=repeat_region
AL450380.1	EMBL	gene	2204726	2205079	.	-	.	ID=gene-ML1821;Name=ML1821;gbkey=Gene;gene=ML1821;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2204726	2205079	.	-	0	ID=cds-CAC30774.1;Parent=gene-ML1821;Dbxref=UniProtKB/TrEMBL:Q9CBL0,NCBI_GP:CAC30774.1;Name=CAC30774.1;Note=questionable CDS.;gbkey=CDS;gene=ML1821;product=very hypothetical protein;protein_id=CAC30774.1;transl_table=11
AL450380.1	EMBL	pseudogene	2205581	2206228	.	+	.	ID=gene-ML1822;Name=ML1822;gbkey=Gene;gene=ML1822;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2205581	2206228	.	+	0	ID=cds-ML1822;Parent=gene-ML1822;Note=Possible pseudogene of M. tuberculosis orthologue Rv2301 (Best blastx score 415);gbkey=CDS;gene=ML1822;product=probable cutinase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2207104	2208626	.	-	.	ID=gene-ML1823;Name=ML1823;gbkey=Gene;gene=ML1823;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2207104	2208626	.	-	0	ID=cds-ML1823;Parent=gene-ML1823;gbkey=CDS;gene=ML1823;product=putative transposase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2207445	2208705	.	-	.	ID=id-AL450380.1:2207445..2208705;Note=1261 bp repeat%2C 100%25 identical to region 2113323..2114583;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	2208708	2210813	.	-	.	ID=id-AL450380.1:2208708..2210813;Note=Dispersed repeat%2C LEPREP%2C copy 5. Truncated at 3'-end;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2208981	2210124	.	-	.	ID=gene-ML1824;Name=ML1824;gbkey=Gene;gene=ML1824;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2208981	2210124	.	-	0	ID=cds-ML1824;Parent=gene-ML1824;Note=Similar to many e.g. Cryphonectria parasitica (Chesnut blight fungus) putative maturase TR:AAF27656 (EMBL:AF218567) (778 aa) fasta scores: E(): 7.8e-11%2C 29.2%25 id in 216 aa;gbkey=CDS;gene=ML1824;product=putative group II intron maturase-related protein;pseudo=true;transl_table=11
AL450380.1	EMBL	stem_loop	2209444	2209497	.	-	.	ID=id-ML1824;gbkey=stem_loop;gene=ML1824;pseudo=true
AL450380.1	EMBL	pseudogene	2210329	2210468	.	-	.	ID=gene-ML1825;Name=ML1825;gbkey=Gene;gene=ML1825;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2210329	2210468	.	-	0	ID=cds-ML1825;Parent=gene-ML1825;Note=Similar to Pseudomonas putida transposase tnpa1 TR:Q9R9U9 (EMBL:AJ245436) (355 aa) fasta scores: E(): 3.4e-05%2C 47.8%25 id in 46 aa%2C and to Agrobacterium tumefaciens transposase TR:Q44454 (EMBL:Z18270) (366 aa) fasta scores: E(): 0.00026%2C 41.3%25 id in 46 aa;gbkey=CDS;gene=ML1825;pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2211561	2211762	.	-	.	ID=gene-cobU;Name=cobU;gbkey=Gene;gene=cobU;gene_biotype=pseudogene;gene_synonym=ML1826;pseudo=true
AL450380.1	EMBL	CDS	2211561	2211762	.	-	0	ID=cds-cobU;Parent=gene-cobU;Note=Possible pseudogene of M. tuberculosis orthologue cobU (Best blastx score 185);gbkey=CDS;gene=cobU;product=cobinamide kinase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2211837	2212473	.	-	.	ID=gene-cobQ;Name=cobQ;gbkey=Gene;gene=cobQ;gene_biotype=pseudogene;gene_synonym=ML1827;pseudo=true
AL450380.1	EMBL	CDS	2211837	2212473	.	-	0	ID=cds-cobQ;Parent=gene-cobQ;Note=Possible pseudogene of M. tuberculosis orthologue cobQ (Best blastx score 336);gbkey=CDS;gene=cobQ;product=cobyric acid synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2212448	2214166	.	-	.	ID=gene-PPE-8;Name=PPE;gbkey=Gene;gene=PPE;gene_biotype=protein_coding;gene_synonym=ML1828
AL450380.1	EMBL	CDS	2212448	2214166	.	-	0	ID=cds-CAC30781.1;Parent=gene-PPE-8;Dbxref=InterPro:IPR000030,UniProtKB/TrEMBL:Q7AQ23,NCBI_GP:CAC30781.1;Name=CAC30781.1;Note=Similar to Mycobacterium tuberculosis PPE-family proteins e.g. Rv0256c or MTV034.22C TR:O53678 (EMBL:AL021929) (556 aa) fasta scores: E(): 0%2C 63.5%25 id in 564 aa. Previously sequenced as TR:O33009 (EMBL:Z98756). Contains Pfam match to entry PF00823 PPE%2C PPE family.;gbkey=CDS;gene=PPE;product=PPE-family protein;protein_id=CAC30781.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2213669	2214145	.	-	.	ID=id-PPE-2;Note=Pfam match to entry PF00823 PPE%2C PPE family%2C score 303.90%2C E-value 1.9e-87;gbkey=misc_feature;gene=PPE
AL450380.1	EMBL	pseudogene	2214297	2214500	.	+	.	ID=gene-ML1828A;Name=ML1828A;gbkey=Gene;gene=ML1828A;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2214297	2214500	.	+	0	ID=cds-ML1828A;Parent=gene-ML1828A;Dbxref=PSEUDO:CAC30782.1;Note=ML1828A. Unknown but orthologous to M. tuberculosis Rv0257 (124 aa). BLASTP score: 1e-15 Identities %3D 38/46 (82%25). Probably pseudogene as Rv0257 is longer;gbkey=CDS;gene=ML1828A;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2214813	2215190	.	+	.	ID=gene-ML1829;Name=ML1829;gbkey=Gene;gene=ML1829;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2214813	2215190	.	+	0	ID=cds-CAC30783.1;Parent=gene-ML1829;Dbxref=UniProtKB/TrEMBL:Q9CBK9,NCBI_GP:CAC30783.1;Name=CAC30783.1;Note=Unknown function.;gbkey=CDS;gene=ML1829;product=hypothetical protein;protein_id=CAC30783.1;transl_table=11
AL450380.1	EMBL	pseudogene	2216051	2216868	.	-	.	ID=gene-ML1830;Name=ML1830;gbkey=Gene;gene=ML1830;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2216051	2216868	.	-	0	ID=cds-ML1830;Parent=gene-ML1830;gbkey=CDS;gene=ML1830;product=putative aminotransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2219402	2220202	.	-	.	ID=gene-mapA;Name=mapA;gbkey=Gene;gene=mapA;gene_biotype=protein_coding;gene_synonym=ML1831
AL450380.1	EMBL	CDS	2219402	2220202	.	-	0	ID=cds-CAC30785.1;Parent=gene-mapA;Dbxref=GOA:Q7AQ22,InterPro:IPR000994,InterPro:IPR001714,InterPro:IPR002467,UniProtKB/TrEMBL:Q7AQ22,NCBI_GP:CAC30785.1;Name=CAC30785.1;Note=Similar to M. tuberculosis methionine aminopeptidase map' Rv0734 TR:O53797 (EMBL:AL021958) (266 aa)%3B Fasta score E(): 0%2C 84.0%25 identity in 262 aa overlap%2C and to many others e.g. Bacillus subtilis methionine aminopeptidase SW:AMPM_BACSU (P19994) (248 aa)%3B Fasta score E(): 0%2C 43.3%25 identity in 245 aa overlap. Contains Pfam match to entry PF00557 Peptidase_M24%2C metallopeptidase family M24.%3B~Similar to ML1576 and ML0521;gbkey=CDS;gene=mapA;product=probable methionine aminopeptidase;protein_id=CAC30785.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2219420	2220163	.	-	.	ID=id-mapA;Note=Pfam match to entry PF00557 Peptidase_M24%2C metallopeptidase family M24%2C score 153.70%2C E-value 3.2e-42;gbkey=misc_feature;gene=mapA
AL450380.1	EMBL	gene	2220214	2220759	.	-	.	ID=gene-adk;Name=adk;gbkey=Gene;gene=adk;gene_biotype=protein_coding;gene_synonym=ML1832
AL450380.1	EMBL	CDS	2220214	2220759	.	-	0	ID=cds-CAC30786.1;Parent=gene-adk;Dbxref=GOA:O33007,InterPro:IPR000850,InterPro:IPR006259,InterPro:IPR027417,NCBI_GP:CAC30786.1;Name=CAC30786.1;Note=Similar to M. tuberculosis adenylate kinase adk Rv0733 SW:KAD_MYCTU (O53796) (181 aa)%3B Fasta score E(): 0%2C 83.4%25 identity in 181 aa overlap%2C and to many thers e.g. Bacillus subtilis adenylate kinase SW:KAD_BACSU (P16304) (217 aa)%3B Fasta score E(): 2.9e-20%2C 39.3%25 identity in 211 aa overlap. Contains Pfam match to entry PF00406 adenylatekinase%2C Adenylate kinase. Contains PS00113 Adenylate kinase signature.;gbkey=CDS;gene=adk;product=probable adenylate kinase;protein_id=CAC30786.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2220280	2220747	.	-	.	ID=id-adk;Note=Pfam match to entry PF00406 adenylatekinase%2C Adenylate kinase%2C score 238.10%2C E-value 1.2e-67;gbkey=misc_feature;gene=adk
AL450380.1	EMBL	sequence_feature	2220484	2220519	.	-	.	ID=id-adk-2;Note=PS00113 Adenylate kinase signature;gbkey=misc_feature;gene=adk
AL450380.1	EMBL	gene	2220756	2222072	.	-	.	ID=gene-secY;Name=secY;gbkey=Gene;gene=secY;gene_biotype=protein_coding;gene_synonym=ML1833
AL450380.1	EMBL	CDS	2220756	2222072	.	-	0	ID=cds-CAC30787.1;Parent=gene-secY;Dbxref=GOA:O33006,InterPro:IPR002208,InterPro:IPR023201,InterPro:IPR026593,NCBI_GP:CAC30787.1;Name=CAC30787.1;Note=Similar to M. tuberculosis preprotein translocase secy subunit RV0732 SW:SECY_MYCTU (P94926) (441 aa)%3B Fasta score E(): 0%2C 91.6%25 identity in 441 aa overlap%2C and to many others e.g. Bacillus subtilis SW:SECY_BACSU (P16336) (431 aa)%3B Fasta score E(): 0%2C 42.7%25 identity in 445 aa overlap. Contains Pfam match to entry PF00344 secY%2C eubacterial secY protein. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00756 Protein secY signature 2.;gbkey=CDS;gene=secY;product=SecY subunit of preprotein translocase;protein_id=CAC30787.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2220804	2221853	.	-	.	ID=id-secY;Note=Pfam match to entry PF00344 secY%2C eubacterial secY protein%2C score 591.10%2C E-value 7e-174;gbkey=misc_feature;gene=secY
AL450380.1	EMBL	sequence_feature	2221176	2221199	.	-	.	ID=id-secY-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=secY
AL450380.1	EMBL	sequence_feature	2221500	2221556	.	-	.	ID=id-secY-3;Note=PS00756 Protein secY signature 2;gbkey=misc_feature;gene=secY
AL450380.1	EMBL	pseudogene	2222453	2223120	.	+	.	ID=gene-ML1834;Name=ML1834;gbkey=Gene;gene=ML1834;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2222453	2223120	.	+	0	ID=cds-ML1834;Parent=gene-ML1834;Note=Possible pseudogene of M. tuberculosis orthologue Rv0731c (Best blastx score 125);gbkey=CDS;gene=ML1834;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2223216	2223899	.	-	.	ID=gene-ML1835;Name=ML1835;gbkey=Gene;gene=ML1835;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2223216	2223899	.	-	0	ID=cds-CAC30789.1;Parent=gene-ML1835;Dbxref=GOA:Q7AQ21,InterPro:IPR000182,InterPro:IPR013760,InterPro:IPR016181,UniProtKB/TrEMBL:Q7AQ21,NCBI_GP:CAC30789.1;Name=CAC30789.1;Note=Similar to M. tuberculosis hypothetical protein Rv0730 TR:O53794 (EMBL:AL021958) (242 aa)%3B Fasta score E(): 0%2C 83.5%25 identity in 218 aa overlap.;gbkey=CDS;gene=ML1835;product=conserved hypothetical protein;protein_id=CAC30789.1;transl_table=11
AL450380.1	EMBL	pseudogene	2223993	2224993	.	-	.	ID=gene-xylB;Name=xylB;gbkey=Gene;gene=xylB;gene_biotype=pseudogene;gene_synonym=ML1836;pseudo=true
AL450380.1	EMBL	CDS	2223993	2224993	.	-	0	ID=cds-xylB;Parent=gene-xylB;Note=Possible pseudogene of M. tuberculosis orthologue xylB (Best blastx score 417);gbkey=CDS;gene=xylB;product=xylulose kinase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2225028	2226009	.	+	.	ID=gene-ML1837;Name=ML1837;gbkey=Gene;gene=ML1837;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2225028	2226009	.	+	0	ID=cds-ML1837;Parent=gene-ML1837;Note=Possible pseudogene of M. tuberculosis orthologue Rv0728c (Best blastx score 581);gbkey=CDS;gene=ML1837;product=similar to D-3-phosphoglycerate dehydrogenases (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2226089	2226446	.	+	.	ID=gene-fucA;Name=fucA;gbkey=Gene;gene=fucA;gene_biotype=pseudogene;gene_synonym=ML1838;pseudo=true
AL450380.1	EMBL	CDS	2226089	2226446	.	+	0	ID=cds-fucA;Parent=gene-fucA;Note=Possible pseudogene of M. tuberculosis orthologue fucA (Best blastx score 229);gbkey=CDS;gene=fucA;product=L-fuculose phosphate aldolase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2226936	2228744	.	-	.	ID=gene-sppA;Name=sppA;gbkey=Gene;gene=sppA;gene_biotype=protein_coding;gene_synonym=ML1839
AL450380.1	EMBL	CDS	2226936	2228744	.	-	0	ID=cds-CAC30793.1;Parent=gene-sppA;Dbxref=GOA:Q7AQ20,InterPro:IPR001907,InterPro:IPR002142,InterPro:IPR004634,InterPro:IPR004635,InterPro:IPR029045,UniProtKB/TrEMBL:Q7AQ20,NCBI_GP:CAC30793.1;Name=CAC30793.1;Note=Similar to M. tuberculosis protease IV%2C signal peptide peptidase Rv0724%2C TR:P95072 (EMBL:Z84395) (623 aa)%3B Fasta score E(): 0%2C 80.2%25 identity in 602 aa overlap%2C and to many others e.g. Escherichia coli protease IV SW:SPPA_ECOLI (P08395) (618 aa)%3B Fasta score E(): 2.3e-24%2C 33.1%25 identity in 531 aa overlap. Contains 2 Pfam matches to entry PF01343 Peptidase_U7%2C Peptidase family U7.;gbkey=CDS;gene=sppA;product=protease IV%2C signal peptide peptidase;protein_id=CAC30793.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2227143	2227604	.	-	.	ID=id-sppA;Note=Pfam match to entry PF01343 Peptidase_U7%2C Peptidase family U7%2C score 234.70%2C E-value 1.3e-66;gbkey=misc_feature;gene=sppA
AL450380.1	EMBL	sequence_feature	2227965	2228432	.	-	.	ID=id-sppA-2;Note=Pfam match to entry PF01343 Peptidase_U7%2C Peptidase family U7%2C score 188.70%2C E-value 9e-53;gbkey=misc_feature;gene=sppA
AL450380.1	EMBL	gene	2228980	2229420	.	-	.	ID=gene-rplO;Name=rplO;gbkey=Gene;gene=rplO;gene_biotype=protein_coding;gene_synonym=ML1840
AL450380.1	EMBL	CDS	2228980	2229420	.	-	0	ID=cds-CAC30794.1;Parent=gene-rplO;Dbxref=GOA:O33002,InterPro:IPR001196,InterPro:IPR005749,InterPro:IPR021131,NCBI_GP:CAC30794.1;Name=CAC30794.1;Note=Similar to M. tuberculosis 50S ribosomal protein L15 Rv0723 SW:RL15_MYCTU (P95071) (146 aa)%3B Fasta score E(): 0%2C 81.5%25 identity in 146 aa overlap. Contains Pfam match to entry PF00256 L15%2C Ribosomal protein L15. Contains Pfam match to entry PF01305 Ribosomal_L15%2C Ribosomal protein L15 amino terminal region. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00475 Ribosomal protein L15 signature.;gbkey=CDS;gene=rplO;product=50S ribosomal protein L15;protein_id=CAC30794.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2228998	2229093	.	-	.	ID=id-rplO;Note=Pfam match to entry PF00256 L15%2C Ribosomal protein L15%2C score 43.00%2C E-value 2.9e-14;gbkey=misc_feature;gene=rplO
AL450380.1	EMBL	sequence_feature	2229001	2229093	.	-	.	ID=id-rplO-2;Note=PS00475 Ribosomal protein L15 signature;gbkey=misc_feature;gene=rplO
AL450380.1	EMBL	sequence_feature	2229112	2229414	.	-	.	ID=id-rplO-3;Note=Pfam match to entry PF01305 Ribosomal_L15%2C Ribosomal protein L15 amino terminal region%2C score 209.60%2C E-value 4.8e-59;gbkey=misc_feature;gene=rplO
AL450380.1	EMBL	sequence_feature	2229328	2229351	.	-	.	ID=id-rplO-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=rplO
AL450380.1	EMBL	gene	2229421	2229636	.	-	.	ID=gene-rpmD;Name=rpmD;gbkey=Gene;gene=rpmD;gene_biotype=protein_coding;gene_synonym=ML1841
AL450380.1	EMBL	CDS	2229421	2229636	.	-	0	ID=cds-CAC30795.1;Parent=gene-rpmD;Dbxref=GOA:O33001,InterPro:IPR005996,InterPro:IPR016082,InterPro:IPR018038,NCBI_GP:CAC30795.1;Name=CAC30795.1;Note=Similar to M. tuberculosis 50S ribosomal protein L30 Rv0722 SW:RL30_MYCTU (Z84395) (65 aa)%3B Fasta score E(): 1.1e-21%2C 89.2%25 identity in 65 aa overlap. Contains Pfam match to entry PF00327 Ribosomal_L30%2C Ribosomal protein L30p/L7e.;gbkey=CDS;gene=rpmD;product=50S ribosomal protein L30;protein_id=CAC30795.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2229475	2229633	.	-	.	ID=id-rpmD;Note=Pfam match to entry PF00327 Ribosomal_L30%2C Ribosomal protein L30p/L7e%2C score 59.00%2C E-value 2e-16;gbkey=misc_feature;gene=rpmD
AL450380.1	EMBL	gene	2229639	2230292	.	-	.	ID=gene-rpsE;Name=rpsE;gbkey=Gene;gene=rpsE;gene_biotype=protein_coding;gene_synonym=ML1842
AL450380.1	EMBL	CDS	2229639	2230292	.	-	0	ID=cds-CAC30796.1;Parent=gene-rpsE;Dbxref=GOA:O33000,InterPro:IPR000851,InterPro:IPR005324,InterPro:IPR005712,InterPro:IPR013810,InterPro:IPR014720,InterPro:IPR014721,InterPro:IPR018192,InterPro:IPR020568,NCBI_GP:CAC30796.1;Name=CAC30796.1;Note=Similar to M. tuberculosis 30S ribosomal protein S5 Rv0721 SW:RS5_MYCTU (P95069) (220 aa)%3B Fasta score E(): 0%2C 87.9%25 identity in 190 aa overlap. Contains Pfam match to entry PF00333 Ribosomal_S5%2C Ribosomal protein S5. Contains PS00585 Ribosomal protein S5 signature.;gbkey=CDS;gene=rpsE;product=30S ribosomal protein S5;protein_id=CAC30796.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2229783	2230169	.	-	.	ID=id-rpsE;Note=Pfam match to entry PF00333 Ribosomal_S5%2C Ribosomal protein S5%2C score 248.40%2C E-value 1e-70;gbkey=misc_feature;gene=rpsE
AL450380.1	EMBL	sequence_feature	2230032	2230130	.	-	.	ID=id-rpsE-2;Note=PS00585 Ribosomal protein S5 signature;gbkey=misc_feature;gene=rpsE
AL450380.1	EMBL	gene	2230321	2230686	.	-	.	ID=gene-rplR;Name=rplR;gbkey=Gene;gene=rplR;gene_biotype=protein_coding;gene_synonym=ML1843
AL450380.1	EMBL	CDS	2230321	2230686	.	-	0	ID=cds-CAC30797.1;Parent=gene-rplR;Dbxref=GOA:O32999,InterPro:IPR004389,InterPro:IPR005484,NCBI_GP:CAC30797.1;Name=CAC30797.1;Note=Similar to M. tuberculosis 50S ribosomal protein L18 Rv0720 SW:RL18_MYCTU (P95068) (122 aa)%3B Fasta score E(): 0%2C 87.5%25 identity in 120 aa overlap. Contains Pfam match to entry PF00861 Ribosomal_L18p%2C Ribosomal L18p/L5e family.;gbkey=CDS;gene=rplR;product=50S ribosomal protein L18;protein_id=CAC30797.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2230324	2230668	.	-	.	ID=id-rplR;Note=Pfam match to entry PF00861 Ribosomal_L18p%2C Ribosomal L18p/L5e family%2C score 178.40%2C E-value 1.2e-49;gbkey=misc_feature;gene=rplR
AL450380.1	EMBL	gene	2230692	2231231	.	-	.	ID=gene-rplF;Name=rplF;gbkey=Gene;gene=rplF;gene_biotype=protein_coding;gene_synonym=ML1844
AL450380.1	EMBL	CDS	2230692	2231231	.	-	0	ID=cds-CAC30798.1;Parent=gene-rplF;Dbxref=GOA:O32998,InterPro:IPR000702,InterPro:IPR002358,InterPro:IPR019906,InterPro:IPR020040,NCBI_GP:CAC30798.1;Name=CAC30798.1;Note=Similar to M. tuberculosis 50S ribosomal protein L6 Rv0719 SW:RL6_MYCTU (P95067) (179 aa)%3B Fasta score E(): 0%2C 90.5%25 identity in 179 aa overlap. Contains Pfam match to entry PF00347 Ribosomal_L6%2C Ribosomal protein L6. Contains PS00525 Ribosomal protein L6 signature 1.;gbkey=CDS;gene=rplF;product=50S ribosomal protein L6;protein_id=CAC30798.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2230695	2231201	.	-	.	ID=id-rplF;Note=Pfam match to entry PF00347 Ribosomal_L6%2C Ribosomal protein L6%2C score 284.80%2C E-value 8.8e-82;gbkey=misc_feature;gene=rplF
AL450380.1	EMBL	sequence_feature	2230743	2230769	.	-	.	ID=id-rplF-2;Note=PS00525 Ribosomal protein L6 signature 1;gbkey=misc_feature;gene=rplF
AL450380.1	EMBL	gene	2231257	2231655	.	-	.	ID=gene-rpsH;Name=rpsH;gbkey=Gene;gene=rpsH;gene_biotype=protein_coding;gene_synonym=ML1845
AL450380.1	EMBL	CDS	2231257	2231655	.	-	0	ID=cds-CAC30799.1;Parent=gene-rpsH;Dbxref=GOA:O32997,InterPro:IPR000630,NCBI_GP:CAC30799.1;Name=CAC30799.1;Note=Similar to M. tuberculosis 30S ribosomal protein S8 RV0718 SW:RS8_MYCTU (P95066) (132 aa)%3B Fasta score E(): 0%2C 93.9%25 identity in 132 aa overlap. Contains Pfam match to entry PF00410 Ribosomal_S8%2C Ribosomal protein S8. Contains PS00053 Ribosomal protein S8 signature.;gbkey=CDS;gene=rpsH;product=30S ribosomal protein S8;protein_id=CAC30799.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2231260	2231643	.	-	.	ID=id-rpsH;Note=Pfam match to entry PF00410 Ribosomal_S8%2C Ribosomal protein S8%2C score 233.40%2C E-value 1.3e-70;gbkey=misc_feature;gene=rpsH
AL450380.1	EMBL	sequence_feature	2231299	2231352	.	-	.	ID=id-rpsH-2;Note=PS00053 Ribosomal protein S8 signature;gbkey=misc_feature;gene=rpsH
AL450380.1	EMBL	gene	2231738	2231923	.	-	.	ID=gene-rpsN;Name=rpsN;gbkey=Gene;gene=rpsN;gene_biotype=protein_coding;gene_synonym=ML1846
AL450380.1	EMBL	CDS	2231738	2231923	.	-	0	ID=cds-CAC30800.1;Parent=gene-rpsN;Dbxref=GOA:O32996,InterPro:IPR001209,InterPro:IPR018271,InterPro:IPR023053,NCBI_GP:CAC30800.1;Name=CAC30800.1;Note=Similar to M. tuberculosis 30S ribosomal protein S14-1 Rv0717 SW:R14A_MYCTU (P95065) (61 aa)%3B Fasta score E(): 1.8e-25%2C 91.8%25 identity in 61 aa overlap. Contains Pfam match to entry PF00253 Ribosomal_S14%2C Ribosomal protein S14p/S29e. Contains PS00527 Ribosomal protein S14 signature.;gbkey=CDS;gene=rpsN;product=30S ribosomal protein S14;protein_id=CAC30800.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2231741	2231923	.	-	.	ID=id-rpsN;Note=Pfam match to entry PF00253 Ribosomal_S14%2C Ribosomal protein S14p/S29e%2C score 98.60%2C E-value 3.3e-29;gbkey=misc_feature;gene=rpsN
AL450380.1	EMBL	sequence_feature	2231789	2231857	.	-	.	ID=id-rpsN-2;Note=PS00527 Ribosomal protein S14 signature;gbkey=misc_feature;gene=rpsN
AL450380.1	EMBL	gene	2231929	2232492	.	-	.	ID=gene-rplE;Name=rplE;gbkey=Gene;gene=rplE;gene_biotype=protein_coding;gene_synonym=ML1847
AL450380.1	EMBL	CDS	2231929	2232492	.	-	0	ID=cds-CAC30801.1;Parent=gene-rplE;Dbxref=GOA:O32995,InterPro:IPR002132,InterPro:IPR020930,InterPro:IPR022803,NCBI_GP:CAC30801.1;Name=CAC30801.1;Note=Similar to M. tuberculosis 50S ribosomal protein L5 Rv0716 SW:RL5_MYCTU (P95064) (187 aa)%3B Fasta score E(): 0%2C 91.4%25 identity in 187 aa overlap. Contains Pfam match to entry PF00281 Ribosomal_L5%2C Ribosomal protein L5. Contains Pfam match to entry PF00673 Ribosomal_L5_C%2C ribosomal L5P family C-terminus.;gbkey=CDS;gene=rplE;product=50S ribosomal protein L5;protein_id=CAC30801.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2231938	2232222	.	-	.	ID=id-rplE;Note=Pfam match to entry PF00673 Ribosomal_L5_C%2C ribosomal L5P family C-terminus%2C score 182.90%2C E-value 5e-51;gbkey=misc_feature;gene=rplE
AL450380.1	EMBL	sequence_feature	2232232	2232402	.	-	.	ID=id-rplE-2;Note=Pfam match to entry PF00281 Ribosomal_L5%2C Ribosomal protein L5%2C score 98.60%2C E-value 1.3e-25;gbkey=misc_feature;gene=rplE
AL450380.1	EMBL	gene	2232493	2232810	.	-	.	ID=gene-rplX;Name=rplX;gbkey=Gene;gene=rplX;gene_biotype=protein_coding;gene_synonym=ML1848
AL450380.1	EMBL	CDS	2232493	2232810	.	-	0	ID=cds-CAC30802.1;Parent=gene-rplX;Dbxref=GOA:O32994,InterPro:IPR003256,InterPro:IPR005824,InterPro:IPR005825,InterPro:IPR008991,InterPro:IPR014722,NCBI_GP:CAC30802.1;Name=CAC30802.1;Note=Similar to M. tuberculosis 50S ribosomal protein L24 Rv0715 SW:RL24_MYCTU (P95063) (105 aa)%3B Fasta score E(): 0%2C 93.3%25 identity in 105 aa overlap. Contains Pfam match to entry PF00467 Ribosomal_L24%2C KOW motif. Contains PS01108 Ribosomal protein L24 signature.;gbkey=CDS;gene=rplX;product=50S ribosomal protein L24;protein_id=CAC30802.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2232625	2232804	.	-	.	ID=id-rplX;Note=Pfam match to entry PF00467 Ribosomal_L24%2C KOW motif%2C score 94.60%2C E-value 2e-24;gbkey=misc_feature;gene=rplX
AL450380.1	EMBL	sequence_feature	2232742	2232795	.	-	.	ID=id-rplX-2;Note=PS01108 Ribosomal protein L24 signature;gbkey=misc_feature;gene=rplX
AL450380.1	EMBL	gene	2232811	2233152	.	-	.	ID=gene-rplN;Name=rplN;gbkey=Gene;gene=rplN;gene_biotype=protein_coding;gene_synonym=ML1849
AL450380.1	EMBL	CDS	2232811	2233152	.	-	0	ID=cds-CAC30803.1;Parent=gene-rplN;Dbxref=GOA:O32993,InterPro:IPR000218,InterPro:IPR005745,InterPro:IPR019972,InterPro:IPR023571,NCBI_GP:CAC30803.1;Name=CAC30803.1;Note=Similar to M. tuberculosis 50S ribosomal protein L14 Rv0714 SW:RL14_MYCTU (P95062) (122 aa)%3B Fasta score E(): 0%2C 96.5%25 identity in 113 aa overlap. Contains Pfam match to entry PF00238 Ribosomal_L14%2C Ribosomal protein L14p/L23e. Contains PS00049 Ribosomal protein L14 signature.;gbkey=CDS;gene=rplN;product=50S ribosomal protein L14;protein_id=CAC30803.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2232814	2233152	.	-	.	ID=id-rplN;Note=Pfam match to entry PF00238 Ribosomal_L14%2C Ribosomal protein L14p/L23e%2C score 238.10%2C E-value 1.2e-67;gbkey=misc_feature;gene=rplN
AL450380.1	EMBL	sequence_feature	2232922	2233002	.	-	.	ID=id-rplN-2;Note=PS00049 Ribosomal protein L14 signature;gbkey=misc_feature;gene=rplN
AL450380.1	EMBL	repeat_region	2233397	2234450	.	-	.	ID=id-AL450380.1:2233397..2234450;Note=1054 bp repeat%2C 100%25 identical to bases 1538642..1539695;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2233452	2234448	.	-	.	ID=gene-ML1850;Name=ML1850;gbkey=Gene;gene=ML1850;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2233452	2234448	.	-	0	ID=cds-ML1850;Parent=gene-ML1850;Note=Possible pseudogene of M. tuberculosis paralog Rv0336;gbkey=CDS;gene=ML1850;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2234744	2235610	.	-	.	ID=gene-ML1851;Name=ML1851;gbkey=Gene;gene=ML1851;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2234744	2235610	.	-	0	ID=cds-ML1851;Parent=gene-ML1851;Note=Possible pseudogene of M. tuberculosis orthologue Rv0712 (Best blastx score 304);gbkey=CDS;gene=ML1851;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2235748	2236029	.	-	.	ID=gene-ML1852;Name=ML1852;gbkey=Gene;gene=ML1852;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2235748	2236029	.	-	0	ID=cds-ML1852;Parent=gene-ML1852;Note=Possible pseudogene of M. tuberculosis orthologue Rv0713;gbkey=CDS;gene=ML1852;product=integral membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2236220	2237463	.	-	.	ID=gene-atsA;Name=atsA;gbkey=Gene;gene=atsA;gene_biotype=pseudogene;gene_synonym=ML1853;pseudo=true
AL450380.1	EMBL	CDS	2236220	2237463	.	-	0	ID=cds-atsA;Parent=gene-atsA;Note=Possible pseudogene of M. tuberculosis orthologue atsA (Best blastx score 344);gbkey=CDS;gene=atsA;product=arylsulfatase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2238349	2238732	.	-	.	ID=gene-rpsQ;Name=rpsQ;gbkey=Gene;gene=rpsQ;gene_biotype=protein_coding;gene_synonym=ML1854
AL450380.1	EMBL	CDS	2238349	2238732	.	-	0	ID=cds-CAC30808.1;Parent=gene-rpsQ;Dbxref=GOA:O32990,InterPro:IPR000266,InterPro:IPR012340,InterPro:IPR019979,InterPro:IPR019984,NCBI_GP:CAC30808.1;Name=CAC30808.1;Note=Similar to M. tuberculosis 30S ribosomal protein S17 Rv0710 SW:RS17_MYCTU (P95058) (136 aa)%3B Fasta score E(): 1.5e-29%2C 77.2%25 identity in 136 aa overlap. Contains Pfam match to entry PF00366 Ribosomal_S17%2C Ribosomal protein S17. Contains PS00056 Ribosomal protein S17 signature.;gbkey=CDS;gene=rpsQ;product=30S ribosomal protein S17;protein_id=CAC30808.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2238367	2238573	.	-	.	ID=id-rpsQ;Note=Pfam match to entry PF00366 Ribosomal_S17%2C Ribosomal protein S17%2C score 124.50%2C E-value 9.3e-36;gbkey=misc_feature;gene=rpsQ
AL450380.1	EMBL	sequence_feature	2238397	2238435	.	-	.	ID=id-rpsQ-2;Note=PS00056 Ribosomal protein S17 signature;gbkey=misc_feature;gene=rpsQ
AL450380.1	EMBL	gene	2238729	2238974	.	-	.	ID=gene-rpmC;Name=rpmC;gbkey=Gene;gene=rpmC;gene_biotype=protein_coding;gene_synonym=ML1855
AL450380.1	EMBL	CDS	2238729	2238974	.	-	0	ID=cds-CAC30809.1;Parent=gene-rpmC;Dbxref=GOA:O32989,InterPro:IPR001854,InterPro:IPR018254,NCBI_GP:CAC30809.1;Name=CAC30809.1;Note=Similar to M. tuberculosis 50S ribosomal protein L29 Rv0709 SW:RL29_MYCTU (P95057) (77 aa)%3B Fasta score E(): 2.5e-25%2C 91.9%25 identity in 74 aa overlap. Contains Pfam match to entry PF00831 Ribosomal_L29%2C Ribosomal L29 protein.;gbkey=CDS;gene=rpmC;product=50S ribosomal protein L29;protein_id=CAC30809.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2238765	2238953	.	-	.	ID=id-rpmC;Note=Pfam match to entry PF00831 Ribosomal_L29%2C Ribosomal L29 protein%2C score 106.30%2C E-value 5.7e-28;gbkey=misc_feature;gene=rpmC
AL450380.1	EMBL	gene	2238971	2239387	.	-	.	ID=gene-rplP;Name=rplP;gbkey=Gene;gene=rplP;gene_biotype=protein_coding;gene_synonym=ML1856
AL450380.1	EMBL	CDS	2238971	2239387	.	-	0	ID=cds-CAC30810.1;Parent=gene-rplP;Dbxref=GOA:O32988,InterPro:IPR000114,InterPro:IPR016180,InterPro:IPR020798,NCBI_GP:CAC30810.1;Name=CAC30810.1;Note=Similar to M. tuberculosis 50S ribosomal protein L16 RV0708 SW:RL16_MYCTU (P95056) (138 aa)%3B Fasta score E(): 0%2C 96.4%25 identity in 138 aa overlap. Contains Pfam match to entry PF00252 Ribosomal_L16%2C Ribosomal protein L16. Contains PS00701 Ribosomal protein L16 signature 2.;gbkey=CDS;gene=rplP;product=50S ribosomal protein L16;protein_id=CAC30810.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2238992	2239387	.	-	.	ID=id-rplP;Note=Pfam match to entry PF00252 Ribosomal_L16%2C Ribosomal protein L16%2C score 242.20%2C E-value 7e-70;gbkey=misc_feature;gene=rplP
AL450380.1	EMBL	sequence_feature	2239109	2239144	.	-	.	ID=id-rplP-2;Note=PS00701 Ribosomal protein L16 signature 2;gbkey=misc_feature;gene=rplP
AL450380.1	EMBL	gene	2239391	2240236	.	-	.	ID=gene-rpsC;Name=rpsC;gbkey=Gene;gene=rpsC;gene_biotype=protein_coding;gene_synonym=ML1857
AL450380.1	EMBL	CDS	2239391	2240236	.	-	0	ID=cds-CAC30811.1;Parent=gene-rpsC;Dbxref=GOA:O32987,InterPro:IPR001351,InterPro:IPR004044,InterPro:IPR004087,InterPro:IPR005704,InterPro:IPR009019,InterPro:IPR015946,InterPro:IPR018280,NCBI_GP:CAC30811.1;Name=CAC30811.1;Note=Similar to M. tuberculosis 30S ribosomal protein S3 RV0707 SW:RS3_MYCTU (P95055) (273 aa)%3B Fasta score E(): 0%2C 95.0%25 identity in 259 aa overlap. Contains Pfam match to entry PF00417 Ribosomal_S3_N%2C Ribosomal protein S3%2C N-terminal domain.. Contains Pfam match to entry PF00013 KH-domain%2C KH domain. Contains Pfam match to entry PF00189 Ribosomal_S3_C%2C Ribosomal protein S3%2C C-terminal domain.. Contains PS00548 Ribosomal protein S3 signature.;gbkey=CDS;gene=rpsC;product=30S ribosomal protein S3;protein_id=CAC30811.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2239631	2239885	.	-	.	ID=id-rpsC;Note=Pfam match to entry PF00189 Ribosomal_S3_C%2C Ribosomal protein S3%2C C-terminal domain.%2C score 161.40%2C E-value 1.3e-49;gbkey=misc_feature;gene=rpsC
AL450380.1	EMBL	sequence_feature	2239646	2239750	.	-	.	ID=id-rpsC-2;Note=PS00548 Ribosomal protein S3 signature;gbkey=misc_feature;gene=rpsC
AL450380.1	EMBL	sequence_feature	2239961	2240047	.	-	.	ID=id-rpsC-3;Note=Pfam match to entry PF00013 KH-domain%2C KH domain%2C score 19.30%2C E-value 0.00022;gbkey=misc_feature;gene=rpsC
AL450380.1	EMBL	sequence_feature	2240054	2240233	.	-	.	ID=id-rpsC-4;Note=Pfam match to entry PF00417 Ribosomal_S3_N%2C Ribosomal protein S3%2C N-terminal domain.%2C score 87.60%2C E-value 4.7e-27;gbkey=misc_feature;gene=rpsC
AL450380.1	EMBL	gene	2240236	2240763	.	-	.	ID=gene-rplV;Name=rplV;gbkey=Gene;gene=rplV;gene_biotype=protein_coding;gene_synonym=ML1858
AL450380.1	EMBL	CDS	2240236	2240763	.	-	0	ID=cds-CAC30812.1;Parent=gene-rplV;Dbxref=GOA:O32986,InterPro:IPR001063,InterPro:IPR005727,InterPro:IPR018260,NCBI_GP:CAC30812.1;Name=CAC30812.1;Note=Similar to M. tuberculosis 50S ribosomal protein L22 Rv0706 SW:RL22_MYCTU (P95054) (197 aa)%3B Fasta score E(): 0%2C 76.3%25 identity in 190 aa overlap. Contains Pfam match to entry PF00237 Ribosomal_L22%2C Ribosomal protein L22p/L17e. Contains PS00464 Ribosomal protein L22 signature.;gbkey=CDS;gene=rplV;product=50S ribosomal protein L22;protein_id=CAC30812.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2240419	2240733	.	-	.	ID=id-rplV;Note=Pfam match to entry PF00237 Ribosomal_L22%2C Ribosomal protein L22p/L17e%2C score 165.10%2C E-value 1.2e-45;gbkey=misc_feature;gene=rplV
AL450380.1	EMBL	sequence_feature	2240425	2240499	.	-	.	ID=id-rplV-2;Note=PS00464 Ribosomal protein L22 signature;gbkey=misc_feature;gene=rplV
AL450380.1	EMBL	gene	2240760	2241041	.	-	.	ID=gene-rpsS;Name=rpsS;gbkey=Gene;gene=rpsS;gene_biotype=protein_coding;gene_synonym=ML1859
AL450380.1	EMBL	CDS	2240760	2241041	.	-	0	ID=cds-CAC30813.1;Parent=gene-rpsS;Dbxref=GOA:O32985,InterPro:IPR002222,InterPro:IPR005732,InterPro:IPR020934,InterPro:IPR023575,NCBI_GP:CAC30813.1;Name=CAC30813.1;Note=Similar to M. tuberculosis 30S ribosomal protein S19 Rv0705 SW:RS19_MYCTU (P48947) (93 aa)%3B Fasta score E(): 0%2C 96.8%25 identity in 93 aa overlap. Contains Pfam match to entry PF00203 Ribosomal_S19%2C Ribosomal protein S19. Contains PS00323 Ribosomal protein S19 signature.;gbkey=CDS;gene=rpsS;product=30S ribosomal protein S19;protein_id=CAC30813.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2240793	2241035	.	-	.	ID=id-rpsS;Note=Pfam match to entry PF00203 Ribosomal_S19%2C Ribosomal protein S19%2C score 179.40%2C E-value 2.1e-51;gbkey=misc_feature;gene=rpsS
AL450380.1	EMBL	sequence_feature	2240811	2240885	.	-	.	ID=id-rpsS-2;Note=PS00323 Ribosomal protein S19 signature;gbkey=misc_feature;gene=rpsS
AL450380.1	EMBL	gene	2241065	2241907	.	-	.	ID=gene-rplB;Name=rplB;gbkey=Gene;gene=rplB;gene_biotype=protein_coding;gene_synonym=ML1860
AL450380.1	EMBL	CDS	2241065	2241907	.	-	0	ID=cds-CAC30814.1;Parent=gene-rplB;Dbxref=GOA:O32984,InterPro:IPR002171,InterPro:IPR005880,InterPro:IPR008991,InterPro:IPR012340,InterPro:IPR014722,InterPro:IPR014726,InterPro:IPR022666,InterPro:IPR022669,InterPro:IPR022671,NCBI_GP:CAC30814.1;Name=CAC30814.1;Note=Similar to M. tuberculosis 50S ribosomal protein L2 Rv0704 SW:RL2_MYCTU (P95052) (280 aa)%3B Fasta score E(): 0%2C 92.1%25 identity in 280 aa overlap. Contains Pfam match to entry PF00181 Ribosomal_L2%2C Ribosomal Proteins L2. Contains PS00467 Ribosomal protein L2 signature.;gbkey=CDS;gene=rplB;product=50S ribosomal protein L2;protein_id=CAC30814.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2241086	2241784	.	-	.	ID=id-rplB;Note=Pfam match to entry PF00181 Ribosomal_L2%2C Ribosomal Proteins L2%2C score 406.20%2C E-value 3.2e-118;gbkey=misc_feature;gene=rplB
AL450380.1	EMBL	sequence_feature	2241218	2241253	.	-	.	ID=id-rplB-2;Note=PS00467 Ribosomal protein L2 signature;gbkey=misc_feature;gene=rplB
AL450380.1	EMBL	gene	2241937	2242239	.	-	.	ID=gene-rplW;Name=rplW;gbkey=Gene;gene=rplW;gene_biotype=protein_coding;gene_synonym=ML1861
AL450380.1	EMBL	CDS	2241937	2242239	.	-	0	ID=cds-CAC30815.1;Parent=gene-rplW;Dbxref=GOA:O32983,InterPro:IPR001014,InterPro:IPR012677,InterPro:IPR012678,InterPro:IPR013025,NCBI_GP:CAC30815.1;Name=CAC30815.1;Note=Similar to M. tuberculosis 50S ribosomal protein L23 Rv0703 SW:RL23_MYCTU (P95051) (100 aa)%3B Fasta score E(): 0%2C 85.0%25 identity in 100 aa overlap. Contains Pfam match to entry PF00276 Ribosomal_L23%2C Ribosomal protein L23. Contains PS00050 Ribosomal protein L23 signature.;gbkey=CDS;gene=rplW;product=50S ribosomal protein L23;protein_id=CAC30815.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2241943	2242218	.	-	.	ID=id-rplW;Note=Pfam match to entry PF00276 Ribosomal_L23%2C Ribosomal protein L23%2C score 117.30%2C E-value 1.2e-33;gbkey=misc_feature;gene=rplW
AL450380.1	EMBL	sequence_feature	2241955	2242002	.	-	.	ID=id-rplW-2;Note=PS00050 Ribosomal protein L23 signature;gbkey=misc_feature;gene=rplW
AL450380.1	EMBL	gene	2242239	2242931	.	-	.	ID=gene-rplD;Name=rplD;gbkey=Gene;gene=rplD;gene_biotype=protein_coding;gene_synonym=ML1862
AL450380.1	EMBL	CDS	2242239	2242931	.	-	0	ID=cds-CAC30816.1;Parent=gene-rplD;Dbxref=GOA:O32982,InterPro:IPR002136,InterPro:IPR013005,InterPro:IPR023574,NCBI_GP:CAC30816.1;Name=CAC30816.1;Note=Similar to M. tuberculosis 50S ribosomal protein L4 Rv0702 SW:RL4_MYCTU (P95050) (223 aa)%3B Fasta score E(): 0%2C 86.7%25 identity in 218 aa overlap. Contains Pfam match to entry PF00573 Ribosomal_L4%2C Ribosomal protein L4/L1 family.;gbkey=CDS;gene=rplD;product=50S ribosomal protein L4;protein_id=CAC30816.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2242284	2242856	.	-	.	ID=id-rplD;Note=Pfam match to entry PF00573 Ribosomal_L4%2C Ribosomal protein L4/L1 family%2C score 271.30%2C E-value 1.3e-77;gbkey=misc_feature;gene=rplD
AL450380.1	EMBL	gene	2242931	2243587	.	-	.	ID=gene-rplC;Name=rplC;gbkey=Gene;gene=rplC;gene_biotype=protein_coding;gene_synonym=ML1863
AL450380.1	EMBL	CDS	2242931	2243587	.	-	0	ID=cds-CAC30817.1;Parent=gene-rplC;Dbxref=GOA:P30762,InterPro:IPR000597,InterPro:IPR009000,InterPro:IPR019926,InterPro:IPR019927,NCBI_GP:CAC30817.1;Name=CAC30817.1;Note=Similar to M. tuberculosis 50S ribosomal protein L3 Rv0701 SW:RL3_MYCTU (P95049) (217 aa)%3B Fasta score E(): 0%2C 93.5%25 identity in 217 aa overlap. Contains Pfam match to entry PF00297 Ribosomal_L3%2C Ribosomal protein L3. Contains PS00474 Ribosomal protein L3 signature.;gbkey=CDS;gene=rplC;product=50S ribosomal protein L3;protein_id=CAC30817.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2242958	2243557	.	-	.	ID=id-rplC;Note=Pfam match to entry PF00297 Ribosomal_L3%2C Ribosomal protein L3%2C score 273.60%2C E-value 2.3e-78;gbkey=misc_feature;gene=rplC
AL450380.1	EMBL	sequence_feature	2243198	2243269	.	-	.	ID=id-rplC-2;Note=PS00474 Ribosomal protein L3 signature;gbkey=misc_feature;gene=rplC
AL450380.1	EMBL	gene	2243600	2243905	.	-	.	ID=gene-rpsJ;Name=rpsJ;gbkey=Gene;gene=rpsJ;gene_biotype=protein_coding;gene_synonym=ML1864
AL450380.1	EMBL	CDS	2243600	2243905	.	-	0	ID=cds-CAC30818.1;Parent=gene-rpsJ;Dbxref=GOA:P30765,InterPro:IPR001848,InterPro:IPR018268,InterPro:IPR027486,NCBI_GP:CAC30818.1;Name=CAC30818.1;Note=Similar to M. tuberculosis 30S ribosomal protein S10 RV0700 SW:RS10_MYCTU (P95048) (101 aa)%3B Fasta score E(): 0%2C 97.0%25 identity in 101 aa overlap. Contains Pfam match to entry PF00338 Ribosomal_S10%2C Ribosomal protein S10p/S20e. Contains PS00361 Ribosomal protein S10 signature.;gbkey=CDS;gene=rpsJ;product=30S ribosomal protein S10;protein_id=CAC30818.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2243606	2243893	.	-	.	ID=id-rpsJ;Note=Pfam match to entry PF00338 Ribosomal_S10%2C Ribosomal protein S10p/S20e%2C score 220.60%2C E-value 2.3e-62;gbkey=misc_feature;gene=rpsJ
AL450380.1	EMBL	sequence_feature	2243774	2243821	.	-	.	ID=id-rpsJ-2;Note=PS00361 Ribosomal protein S10 signature;gbkey=misc_feature;gene=rpsJ
AL450380.1	EMBL	pseudogene	2244671	2245149	.	-	.	ID=gene-ML1865;Name=ML1865;gbkey=Gene;gene=ML1865;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2244671	2245149	.	-	0	ID=cds-ML1865;Parent=gene-ML1865;Note=Possible pseudogene similar to M. tuberculosis PE-family proteins (Best blastx score 125);gbkey=CDS;gene=ML1865;product=PE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2245509	2246904	.	-	.	ID=gene-ML1866;Name=ML1866;gbkey=Gene;gene=ML1866;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2245509	2246904	.	-	0	ID=cds-ML1866;Parent=gene-ML1866;Note=Possible pseudogene of M. tuberculosis orthologue Rv0697 (Best blastx score 550);gbkey=CDS;gene=ML1866;product=gmc-type oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2246911	2248123	.	-	.	ID=gene-ML1867;Name=ML1867;gbkey=Gene;gene=ML1867;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2246911	2248123	.	-	0	ID=cds-ML1867;Parent=gene-ML1867;Note=Possible pseudogene of M. tuberculosis orthologue Rv0696 (Best blastx score 202);gbkey=CDS;gene=ML1867;product=glycosyltransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2248194	2248712	.	-	.	ID=gene-ML1868;Name=ML1868;gbkey=Gene;gene=ML1868;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2248194	2248712	.	-	0	ID=cds-ML1868;Parent=gene-ML1868;Note=Possible pseudogene of M. tuberculosis orthologue Rv0695 (Best blastx score 251);gbkey=CDS;gene=ML1868;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2248745	2249876	.	-	.	ID=gene-lldD1;Name=lldD1;gbkey=Gene;gene=lldD1;gene_biotype=pseudogene;gene_synonym=ML1869;pseudo=true
AL450380.1	EMBL	CDS	2248745	2249876	.	-	0	ID=cds-lldD1;Parent=gene-lldD1;Note=Possible pseudogene of M. tuberculosis orthologue lldD1 (Best blastx score 506);gbkey=CDS;gene=lldD1;product=L-lactate dehydrogenase (cytochrome) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2249970	2251049	.	-	.	ID=gene-pqqE;Name=pqqE;gbkey=Gene;gene=pqqE;gene_biotype=pseudogene;gene_synonym=ML1870;pseudo=true
AL450380.1	EMBL	CDS	2249970	2251049	.	-	0	ID=cds-pqqE;Parent=gene-pqqE;Note=Possible pseudogene of M. tuberculosis orthologue pqqE (Best blastx score 555);gbkey=CDS;gene=pqqE;product=coenzyme pqq synthesis protein E (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2251129	2251389	.	-	.	ID=gene-ML1871;Name=ML1871;gbkey=Gene;gene=ML1871;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2251129	2251389	.	-	0	ID=cds-ML1871;Parent=gene-ML1871;Note=Possible pseudogene of M. tuberculosis orthologue Rv0692 (Best blastx score 123);gbkey=CDS;gene=ML1871;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2251587	2252076	.	+	.	ID=gene-ML1872;Name=ML1872;gbkey=Gene;gene=ML1872;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2251587	2252076	.	+	0	ID=cds-ML1872;Parent=gene-ML1872;Note=Possible pseudogene of M. tuberculosis orthologue Rv0691c (Best blastx score 122);gbkey=CDS;gene=ML1872;product=transcriptional regulator (TetR/AcrR family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2252257	2252737	.	+	.	ID=gene-ML1873;Name=ML1873;gbkey=Gene;gene=ML1873;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2252257	2252737	.	+	0	ID=cds-ML1873;Parent=gene-ML1873;Note=Possible pseudogene of M. tuberculosis orthologue Rv0690c (Best blastx score 169);gbkey=CDS;gene=ML1873;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2253003	2253819	.	-	.	ID=gene-ML1874;Name=ML1874;gbkey=Gene;gene=ML1874;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2253003	2253819	.	-	0	ID=cds-ML1874;Parent=gene-ML1874;Note=Possible pseudogene of M. tuberculosis orthologue Rv0688 (Best blastx score 266);gbkey=CDS;gene=ML1874;product=putative oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2253879	2254569	.	-	.	ID=gene-ML1875;Name=ML1875;gbkey=Gene;gene=ML1875;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2253879	2254569	.	-	0	ID=cds-ML1875;Parent=gene-ML1875;Note=Possible pseudogene of M. tuberculosis orthologue Rv0687 (Best blastx score 122);gbkey=CDS;gene=ML1875;product=putative dehydrogenase%2C SDR family (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2254843	2255511	.	-	.	ID=gene-ML1876;Name=ML1876;gbkey=Gene;gene=ML1876;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2254843	2255511	.	-	0	ID=cds-ML1876;Parent=gene-ML1876;Note=Possible pseudogene of M. tuberculosis orthologue Rv0686 (Best blastx score 157);gbkey=CDS;gene=ML1876;product=potential membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2255790	2256980	.	-	.	ID=gene-tuf;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;gene_synonym=ML1877
AL450380.1	EMBL	CDS	2255790	2256980	.	-	0	ID=cds-CAC30831.1;Parent=gene-tuf;Dbxref=GOA:P30768,InterPro:IPR000795,InterPro:IPR004160,InterPro:IPR004161,InterPro:IPR004541,InterPro:IPR005225,InterPro:IPR009000,InterPro:IPR009001,InterPro:IPR027417,NCBI_GP:CAC30831.1;Name=CAC30831.1;Note=Similar to M. tuberculosis elongation factor TU Rv0685 SW:EFTU_MYCTU (P31501) (396 aa)%3B Fasta score E(): 0%2C 94.9%25 identity in 396 aa overlap%2C and to many others e.g. Escherichia coli SW:EFTU_ECOLI (P02990) (393 aa)%3B Fasta score E(): 0%2C 74.9%25 identity in 395 aa overlap. Contains Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family. Contains PS00301 GTP-binding elongation factors signature. Contains PS00017 ATP/GTP-binding site motif A (P-loop).%3B~Similar to ML1498%2C ML1556%2C ML0611 and ML1878;gbkey=CDS;gene=tuf;product=elongation factor EF-Tu;protein_id=CAC30831.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2255853	2256953	.	-	.	ID=id-tuf;Note=Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family%2C score 537.80%2C E-value 7.3e-158;gbkey=misc_feature;gene=tuf
AL450380.1	EMBL	sequence_feature	2256777	2256824	.	-	.	ID=id-tuf-2;Note=PS00301 GTP-binding elongation factors signature;gbkey=misc_feature;gene=tuf
AL450380.1	EMBL	sequence_feature	2256903	2256926	.	-	.	ID=id-tuf-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=tuf
AL450380.1	EMBL	gene	2257089	2259194	.	-	.	ID=gene-fusA;Name=fusA;gbkey=Gene;gene=fusA;gene_biotype=protein_coding;gene_synonym=ML1878
AL450380.1	EMBL	CDS	2257089	2259194	.	-	0	ID=cds-CAC30832.1;Parent=gene-fusA;Dbxref=GOA:P30767,InterPro:IPR000640,InterPro:IPR000795,InterPro:IPR004161,InterPro:IPR004540,InterPro:IPR005225,InterPro:IPR005517,InterPro:IPR009000,InterPro:IPR009022,InterPro:IPR014721,InterPro:IPR020568,InterPro:IPR027417,NCBI_GP:CAC30832.1;Name=CAC30832.1;Note=Similar to M. tuberculosis elongation factor G RV0684 SW:EFG_MYCTU (O53790) (701 aa)%3B Fasta score E(): 0%2C 90.3%25 identity in 701 aa overlap%2C and to many others e.g. Escherichia coli SW:EFG_ECOLI (P02996) (703 aa)%3B Fasta score E(): 0%2C 59.2%25 identity in 703 aa overlap. Contains Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family. Contains Pfam match to entry PF00679 EFG_C%2C Elongation factor G C-terminus. Contains PS00301 GTP-binding elongation factors signature. Contains PS00017 ATP/GTP-binding site motif A (P-loop).%3B~Similar to ML1498%2C ML0611%2C ML1877 and ML1556;gbkey=CDS;gene=fusA;product=elongation factor G;protein_id=CAC30832.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2257125	2257640	.	-	.	ID=id-fusA;Note=Pfam match to entry PF00679 EFG_C%2C Elongation factor G C-terminus%2C score 372.60%2C E-value 4e-108;gbkey=misc_feature;gene=fusA
AL450380.1	EMBL	sequence_feature	2257719	2259164	.	-	.	ID=id-fusA-2;Note=Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family%2C score 664.00%2C E-value 7.5e-196;gbkey=misc_feature;gene=fusA
AL450380.1	EMBL	sequence_feature	2258988	2259035	.	-	.	ID=id-fusA-3;Note=PS00301 GTP-binding elongation factors signature;gbkey=misc_feature;gene=fusA
AL450380.1	EMBL	sequence_feature	2259114	2259137	.	-	.	ID=id-fusA-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=fusA
AL450380.1	EMBL	gene	2259288	2259758	.	-	.	ID=gene-rpsG;Name=rpsG;gbkey=Gene;gene=rpsG;gene_biotype=protein_coding;gene_synonym=ML1879
AL450380.1	EMBL	CDS	2259288	2259758	.	-	0	ID=cds-CAC30833.1;Parent=gene-rpsG;Dbxref=GOA:P30764,InterPro:IPR000235,InterPro:IPR005717,InterPro:IPR020606,InterPro:IPR023798,NCBI_GP:CAC30833.1;Name=CAC30833.1;Note=Similar to Mycobacterium tuberculosis 30s ribosomal protein S7 rpsG or rps7 or Rv0683 or MTV040.11 SW:RS7_MYCTU (P41194) (155 aa) fasta scores: E(): 0%2C 98.1%25 id in 155 aa and to Mycobacterium smegmatis 30s ribosomal protein S7 rpsG SW:RS7_MYCSM (P41193) (155 aa) fasta scores: E(): 0%2C 95.5%25 id in 155 aa. Previously sequenced as SW:RS7_MYCLE (P30764). Contains Pfam match to entry PF00177 Ribosomal_S7%2C Ribosomal protein S7p/S5e. Contains PS00052 Ribosomal protein S7 signature.;gbkey=CDS;gene=rpsG;product=30S ribosomal protein S7;protein_id=CAC30833.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2259291	2259758	.	-	.	ID=id-rpsG;Note=Pfam match to entry PF00177 Ribosomal_S7%2C Ribosomal protein S7p/S5e%2C score 329.10%2C E-value 4.9e-95;gbkey=misc_feature;gene=rpsG
AL450380.1	EMBL	sequence_feature	2259621	2259701	.	-	.	ID=id-rpsG-2;Note=PS00052 Ribosomal protein S7 signature;gbkey=misc_feature;gene=rpsG
AL450380.1	EMBL	gene	2259758	2260132	.	-	.	ID=gene-rpsL;Name=rpsL;gbkey=Gene;gene=rpsL;gene_biotype=protein_coding;gene_synonym=ML1880
AL450380.1	EMBL	CDS	2259758	2260132	.	-	0	ID=cds-CAC30834.1;Parent=gene-rpsL;Dbxref=GOA:P30766,InterPro:IPR005679,InterPro:IPR006032,InterPro:IPR012340,NCBI_GP:CAC30834.1;Name=CAC30834.1;Note=Similar to M. tuberculosis 30S ribosomal protein S12 RPS12 SW:RS12_MYCTU (P41196) (124 aa)%3B Fasta score E(): 0%2C 97.6%25 identity in 123 aa overlap. Contains Pfam match to entry PF00164 Ribosomal_S12%2C Ribosomal protein S12. Contains PS00055 Ribosomal protein S12 signature.;gbkey=CDS;gene=rpsL;product=30S ribosomal protein S12;protein_id=CAC30834.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2259764	2260132	.	-	.	ID=id-rpsL;Note=Pfam match to entry PF00164 Ribosomal_S12%2C Ribosomal protein S12%2C score 265.90%2C E-value 5.5e-76;gbkey=misc_feature;gene=rpsL
AL450380.1	EMBL	sequence_feature	2259983	2260006	.	-	.	ID=id-rpsL-2;Note=PS00055 Ribosomal protein S12 signature;gbkey=misc_feature;gene=rpsL
AL450380.1	EMBL	pseudogene	2261453	2262238	.	-	.	ID=gene-ML1881;Name=ML1881;gbkey=Gene;gene=ML1881;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2261453	2262238	.	-	0	ID=cds-ML1881;Parent=gene-ML1881;Note=Possible pseudogene of M. tuberculosis paralog Rv2952 (Best blastx score 305);gbkey=CDS;gene=ML1881;product=glycosyltransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2262419	2262691	.	-	.	ID=gene-ML1882;Name=ML1882;gbkey=Gene;gene=ML1882;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2262419	2262691	.	-	0	ID=cds-ML1882;Parent=gene-ML1882;Note=Possible pseudogene of M. tuberculosis orthologue Rv0681 (Best blastx score 194);gbkey=CDS;gene=ML1882;product=transcriptional regulator (TetR/AcrR family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2263078	2263372	.	+	.	ID=gene-ML1883;Name=ML1883;gbkey=Gene;gene=ML1883;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2263078	2263372	.	+	0	ID=cds-ML1883;Parent=gene-ML1883;Note=Possible pseudogene of M. tuberculosis orthologue Rv0680c (Best blastx score 154);gbkey=CDS;gene=ML1883;product=possible membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2263555	2263904	.	+	.	ID=gene-ML1884;Name=ML1884;gbkey=Gene;gene=ML1884;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2263555	2263904	.	+	0	ID=cds-ML1884;Parent=gene-ML1884;Note=Possible pseudogene of M. tuberculosis orthologue Rv0679c (Best blastx score 155);gbkey=CDS;gene=ML1884;product=possible membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2263940	2264700	.	-	.	ID=gene-echA5;Name=echA5;gbkey=Gene;gene=echA5;gene_biotype=pseudogene;gene_synonym=ML1885;pseudo=true
AL450380.1	EMBL	CDS	2263940	2264700	.	-	0	ID=cds-echA5;Parent=gene-echA5;Note=Possible pseudogene of M. tuberculosis orthologue echA5 (Best blastx score 338);gbkey=CDS;gene=echA5;product=enoyl-CoA hydratase/isomerase superfamily (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2264708	2265468	.	-	.	ID=gene-ML1886;Name=ML1886;gbkey=Gene;gene=ML1886;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2264708	2265468	.	-	0	ID=cds-ML1886;Parent=gene-ML1886;Note=Possible pseudogene of M. tuberculosis orthologue Rv0674 (Best blastx score 207);gbkey=CDS;gene=ML1886;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2264780	2265089	.	+	.	ID=id-AL450380.1:2264780..2265089;Note=310 bp repeat. Identical to region complement(2887367..2887676);gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2265604	2266556	.	-	.	ID=gene-echA4;Name=echA4;gbkey=Gene;gene=echA4;gene_biotype=pseudogene;gene_synonym=ML1887;pseudo=true
AL450380.1	EMBL	CDS	2265604	2266556	.	-	0	ID=cds-echA4;Parent=gene-echA4;Note=Possible pseudogene of M. tuberculosis orthologue echA4 (Best blastx score 408);gbkey=CDS;gene=echA4;product=enoyl-CoA hydratase/isomerase superfamily (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2266571	2268067	.	-	.	ID=gene-fadE8;Name=fadE8;gbkey=Gene;gene=fadE8;gene_biotype=pseudogene;gene_synonym=ML1888;pseudo=true
AL450380.1	EMBL	CDS	2266571	2268067	.	-	0	ID=cds-fadE8;Parent=gene-fadE8;Note=Possible pseudogene of M. tuberculosis orthologue fadE8 (Best blastx score 347);gbkey=CDS;gene=fadE8;product=acyl-CoA dehydrogenase (aka aidB) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2268187	2268945	.	-	.	ID=gene-ML1889;Name=ML1889;gbkey=Gene;gene=ML1889;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2268187	2268945	.	-	0	ID=cds-CAC30843.1;Parent=gene-ML1889;Dbxref=GOA:P30770,InterPro:IPR001719,InterPro:IPR013022,InterPro:IPR018246,NCBI_GP:CAC30843.1;Name=CAC30843.1;Note=Similar to Mycobacterium tuberculosis probable endonuclease IV nfo or end or Rv0670 or MTCI376.04C SW:END4_MYCTU (O86366) (252 aa) fasta scores: E(): 0%2C 85.6%25 id in 250 aa. Similar to amny putative endonucleases. Previously sequenced as SW:END4_MYCLE (P30770). Contains Pfam match to entry PF01261 AP_endonulease2%2C AP endonuclease family 2. Contains PS00730 AP endonucleases family 2 signature 2. Contains PS00731 AP endonucleases family 2 signature 3. Contains PS00729 AP endonucleases family 2 signature 1.;gbkey=CDS;gene=ML1889;product=putataive endonuclease IV (apurinase);protein_id=CAC30843.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2268190	2268927	.	-	.	ID=id-ML1889;Note=Pfam match to entry PF01261 AP_endonulease2%2C AP endonuclease family 2%2C score 448.90%2C E-value 4.4e-131;gbkey=misc_feature;gene=ML1889
AL450380.1	EMBL	sequence_feature	2268334	2268378	.	-	.	ID=id-ML1889-2;Note=PS00731 AP endonucleases family 2 signature 3;gbkey=misc_feature;gene=ML1889
AL450380.1	EMBL	sequence_feature	2268451	2268474	.	-	.	ID=id-ML1889-3;Note=PS00730 AP endonucleases family 2 signature 2;gbkey=misc_feature;gene=ML1889
AL450380.1	EMBL	sequence_feature	2268754	2268780	.	-	.	ID=id-ML1889-4;Note=PS00729 AP endonucleases family 2 signature 1;gbkey=misc_feature;gene=ML1889
AL450380.1	EMBL	gene	2269270	2273220	.	-	.	ID=gene-rpoC;Name=rpoC;gbkey=Gene;gene=rpoC;gene_biotype=protein_coding;gene_synonym=ML1890
AL450380.1	EMBL	CDS	2269270	2273220	.	-	0	ID=cds-CAC30844.1;Parent=gene-rpoC;Dbxref=GOA:P30761,InterPro:IPR000722,InterPro:IPR006592,InterPro:IPR007066,InterPro:IPR007080,InterPro:IPR007081,InterPro:IPR007083,InterPro:IPR012754,NCBI_GP:CAC30844.1;Name=CAC30844.1;Note=Similar to M. tuberculosis DNA-directed RNA polymerase beta' chain Rv0668 SW:RPOC_MYCTU (P47769) (1316 aa)%3B Fasta score E(): 0%2C 95.6%25 identity in 1316 aa overlap%2C and to many others e.g. Escherichia coli SW:RPOC_ECOLI (P00577) (1407 aa)%3B Fasta score E(): 0%2C 42.5%25 identity in 1461 aa overlap. Contains Pfam match to entry PF00623 RNA_pol_A%2C RNA polymerase alpha subunit. Contains Pfam match to entry PF01854 RNA_pol_A2%2C RNA polymerase A/beta'/A subunit.;gbkey=CDS;gene=rpoC;product=[beta]' subunit of RNA polymerase;protein_id=CAC30844.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2269423	2270325	.	-	.	ID=id-rpoC;Note=Pfam match to entry PF01854 RNA_pol_A2%2C RNA polymerase A/beta'/A subunit%2C score -67.30%2C E-value 5.4e-06;gbkey=misc_feature;gene=rpoC
AL450380.1	EMBL	sequence_feature	2270497	2272293	.	-	.	ID=id-rpoC-2;Note=Pfam match to entry PF00623 RNA_pol_A%2C RNA polymerase alpha subunit%2C score 928.10%2C E-value 0;gbkey=misc_feature;gene=rpoC
AL450380.1	EMBL	gene	2273269	2276805	.	-	.	ID=gene-rpoB;Name=rpoB;gbkey=Gene;gene=rpoB;gene_biotype=protein_coding;gene_synonym=ML1891
AL450380.1	EMBL	CDS	2273269	2276805	.	-	0	ID=cds-CAC30845.1;Parent=gene-rpoB;Dbxref=GOA:P30760,InterPro:IPR007120,InterPro:IPR007121,InterPro:IPR007641,InterPro:IPR007642,InterPro:IPR007644,InterPro:IPR007645,InterPro:IPR010243,InterPro:IPR014724,InterPro:IPR015712,InterPro:IPR019462,NCBI_GP:CAC30845.1;Name=CAC30845.1;Note=Similar to M. tuberculosis DNA-directed RNA polymerase beta chain RV0667 SW:RPOB_MYCTU (P47766) (1178 aa)%3B Fasta score E(): 0%2C 94.9%25 identity in 1178 aa overlap%2C and to many others e.g. Synechocystis sp. SW:RPOB_SYNY3 (P77965) (1102 aa)%3B Fasta score E(): 0%2C 55.0%25 identity in 1129 aa overlap. Contains Pfam match to entry PF00562 RNA_pol_B%2C RNA polymerase beta subunit. Contains PS01166 RNA polymerases beta chain signature.;gbkey=CDS;gene=rpoB;product=[beta] subunit of RNA polymerase;protein_id=CAC30845.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2273515	2276463	.	-	.	ID=id-rpoB;Note=Pfam match to entry PF00562 RNA_pol_B%2C RNA polymerase beta subunit%2C score 1756.50%2C E-value 0;gbkey=misc_feature;gene=rpoB
AL450380.1	EMBL	sequence_feature	2274124	2274162	.	-	.	ID=id-rpoB-2;Note=PS01166 RNA polymerases beta chain signature;gbkey=misc_feature;gene=rpoB
AL450380.1	EMBL	gene	2277260	2278276	.	-	.	ID=gene-ML1892;Name=ML1892;gbkey=Gene;gene=ML1892;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2277260	2278276	.	-	0	ID=cds-CAC30846.1;Parent=gene-ML1892;Dbxref=GOA:P30769,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAC30846.1;Name=CAC30846.1;Note=Similar to M. tuberculosis ABC transporter Rv0655 SW:MKL_MYCTU (O06784) (359 aa)%3B Fasta score E(): 0%2C 93.2%25 identity in 336 aa overlap%2C and to many others e.g. Escherichia coli hypothetical ABC transporter ATP-binding protein SW:YRBF_ECOLI (P45393) (269 aa)%3B Fasta score E(): 2.4e-32%2C 38.9%25 identity in 252 aa overlap. Contains Pfam match to entry PF00005 ABC_tran%2C ABC transporter. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00211 ABC transporters family signature.%3B~Similar to ML0669%2C ML1424%2C ML1089%2C ML2352%2C ML2189%2C ML0336%2C ML1122%2C ML1113%2C ML0595%2C ML1114%2C ML0590%2C ML1726 and ML1816;gbkey=CDS;gene=ML1892;product=ABC transporter ATP-binding protein;protein_id=CAC30846.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2277626	2278183	.	-	.	ID=id-ML1892;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 164.90%2C E-value 1.4e-45;gbkey=misc_feature;gene=ML1892
AL450380.1	EMBL	sequence_feature	2277806	2277850	.	-	.	ID=id-ML1892-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=ML1892
AL450380.1	EMBL	sequence_feature	2278139	2278162	.	-	.	ID=id-ML1892-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1892
AL450380.1	EMBL	pseudogene	2278441	2279756	.	-	.	ID=gene-ML1893;Name=ML1893;gbkey=Gene;gene=ML1893;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2278441	2279756	.	-	0	ID=cds-ML1893;Parent=gene-ML1893;Note=Possible pseudogene of M. tuberculosis orthologue Rv0654 (Best blastx score 240);gbkey=CDS;gene=ML1893;product=putative dioxygenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2279876	2280344	.	+	.	ID=gene-ML1894;Name=ML1894;gbkey=Gene;gene=ML1894;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2279876	2280344	.	+	0	ID=cds-ML1894;Parent=gene-ML1894;Note=Possible pseudogene of M. tuberculosis orthologue Rv0653c (Best blastx score 142);gbkey=CDS;gene=ML1894;product=putative transcriptional regulator (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2280435	2280827	.	-	.	ID=gene-rplL;Name=rplL;gbkey=Gene;gene=rplL;gene_biotype=protein_coding;gene_synonym=ML1895
AL450380.1	EMBL	CDS	2280435	2280827	.	-	0	ID=cds-CAC30849.1;Parent=gene-rplL;Dbxref=GOA:P30763,InterPro:IPR000206,InterPro:IPR008932,InterPro:IPR013823,InterPro:IPR014719,NCBI_GP:CAC30849.1;Name=CAC30849.1;Note=Similar to M. tuberculosis 50S ribosomal protein L7/L12 rplL Rv0652 SW:RL7_MYCTU (P37381) (130 aa)%3B Fasta score E(): 0%2C 88.5%25 identity in 130 aa overlap. Contains Pfam match to entry PF00542 Ribosomal_L12%2C Ribosomal protein L7/L12 C-terminal domain.;gbkey=CDS;gene=rplL;product=50S ribosomal protein L7/L12;protein_id=CAC30849.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2280438	2280644	.	-	.	ID=id-rplL;Note=Pfam match to entry PF00542 Ribosomal_L12%2C Ribosomal protein L7/L12 C-terminal domain%2C score 130.70%2C E-value 2.7e-35;gbkey=misc_feature;gene=rplL
AL450380.1	EMBL	gene	2280863	2281396	.	-	.	ID=gene-rplJ;Name=rplJ;gbkey=Gene;gene=rplJ;gene_biotype=protein_coding;gene_synonym=ML1896
AL450380.1	EMBL	CDS	2280863	2281396	.	-	0	ID=cds-CAC30850.1;Parent=gene-rplJ;Dbxref=GOA:Q9CBK7,InterPro:IPR001790,InterPro:IPR002363,InterPro:IPR022973,NCBI_GP:CAC30850.1;Name=CAC30850.1;Note=Similar to M. tuberculosis 50S ribosomal protein L10 rplJ OR Rv0651 SW:RL10_MYCTU (P96940) (178 aa)%3B Fasta score E(): 0%2C 89.3%25 identity in 178 aa overlap. Contains Pfam match to entry PF00466 Ribosomal_L10%2C Ribosomal protein L10.;gbkey=CDS;gene=rplJ;product=50S ribosomal protein L10;protein_id=CAC30850.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2281103	2281396	.	-	.	ID=id-rplJ;Note=Pfam match to entry PF00466 Ribosomal_L10%2C Ribosomal protein L10%2C score 142.90%2C E-value 5.8e-39;gbkey=misc_feature;gene=rplJ
AL450380.1	EMBL	pseudogene	2281681	2281952	.	-	.	ID=gene-ML1897;Name=ML1897;gbkey=Gene;gene=ML1897;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2281681	2281952	.	-	0	ID=cds-ML1897;Parent=gene-ML1897;Note=Possible pseudogene of M. tuberculosis orthologue Rv0650 (Best blastx score 139);gbkey=CDS;gene=ML1897;product=transcriptional regulator (ROK family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2282288	2283634	.	+	.	ID=gene-ML1898;Name=ML1898;gbkey=Gene;gene=ML1898;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2282288	2283634	.	+	0	ID=cds-CAC30852.1;Parent=gene-ML1898;Dbxref=GOA:Q9CBK6,InterPro:IPR000719,InterPro:IPR004147,InterPro:IPR011009,UniProtKB/TrEMBL:Q9CBK6,NCBI_GP:CAC30852.1;Name=CAC30852.1;Note=Similar to M. tuberculosis conserved hypothetical protein Rv0647c SW:Y647_MYCTU (P96936) (488 aa)%3B Fasta score E(): 0%2C 85.3%25 identity in 448 aa overlap%2C and to others e.g. Synechocystis sp. SW:YH70_SYNY3 (P73627) (585 aa)%3B Fasta score E(): 0%2C 30.9%25 identity in 401 aa overlap.%3B~Similar to and ML0640;gbkey=CDS;gene=ML1898;product=conserved hypothetical protein;protein_id=CAC30852.1;transl_table=11
AL450380.1	EMBL	gene	2283634	2284548	.	+	.	ID=gene-lipG;Name=lipG;gbkey=Gene;gene=lipG;gene_biotype=protein_coding;gene_synonym=ML1899
AL450380.1	EMBL	CDS	2283634	2284548	.	+	0	ID=cds-CAC30853.1;Parent=gene-lipG;Dbxref=GOA:Q9CBK5,InterPro:IPR029058,UniProtKB/TrEMBL:Q9CBK5,NCBI_GP:CAC30853.1;Name=CAC30853.1;Note=Similar to M. tuberculosis putative hydrolase Rv0646c TR:P96935 (EMBL:Z92772) (301 aa)%3B Fasta score E(): 0%2C 71.3%25 identity in 303 aa overlap%2C and to others e.g. Escherichia coli macrolide 2'-phosphotransferase II TR:P77026 (EMBL:D85892) (279 aa)%3B Fasta score E(): 1.3e-15%2C 31.3%25 identity in 291 aa overlap%2C and Streptomyces peucetius 10-carbomethoxy-13-deoxycarminomycin esterase TR:Q54809 (EMBL:L40425) (298 aa)%3B Fasta score E(): 1e-09%2C 28.6%25 identity in 301 aa overlap. Contains Pfam match to entry PF00561 abhydrolase%2C alpha/beta hydrolase fold.%3B~Similar to and ML0862;gbkey=CDS;gene=lipG;product=probable hydrolase;protein_id=CAC30853.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2283793	2284536	.	+	.	ID=id-lipG;Note=Pfam match to entry PF00561 abhydrolase%2C alpha/beta hydrolase fold%2C score 62.80%2C E-value 7.1e-15;gbkey=misc_feature;gene=lipG
AL450380.1	EMBL	gene	2284606	2285466	.	+	.	ID=gene-mmaA1;Name=mmaA1;gbkey=Gene;gene=mmaA1;gene_biotype=protein_coding;gene_synonym=ML1900
AL450380.1	EMBL	CDS	2284606	2285466	.	+	0	ID=cds-CAC30854.1;Parent=gene-mmaA1;Dbxref=GOA:Q9CBK4,InterPro:IPR003333,InterPro:IPR029063,UniProtKB/TrEMBL:Q9CBK4,NCBI_GP:CAC30854.1;Name=CAC30854.1;Note=Similar to M. tuberculosis methyl mycolic acid synthase 1 Rv0645C TR:P94922 (EMBL:U77466) (286 aa)%3B Fasta score E(): 0%2C 87.4%25 identity in 286 aa overlap%2C and to many others e.g. M. tuberculosis cyclopropane-fatty-acyl-phospholipid synthase 1 SW:CFA1_MYCTU (Q11195) (287 aa)%3B Fasta score E(): 0%2C 54.9%25 identity in 284 aa overlap.%3B~Similar to ML2459%2C ML2426 and ML2334;gbkey=CDS;gene=mmaA1;product=methyl mycolic acid synthase 1;protein_id=CAC30854.1;transl_table=11
AL450380.1	EMBL	pseudogene	2285625	2286492	.	+	.	ID=gene-ML1901;Name=ML1901;gbkey=Gene;gene=ML1901;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2285625	2286492	.	+	0	ID=cds-ML1901;Parent=gene-ML1901;Note=Possible pseudogene of M. tuberculosis orthologue mmaA2;gbkey=CDS;gene=ML1901;product=methyl mycolic acid synthase 2 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2285671	2285731	.	+	.	ID=id-ML1901;Note=61 bp repeat. 86%25 identical to positions 2932108..2932168 (53/61);gbkey=repeat_region;gene=ML1901;pseudo=true
AL450380.1	EMBL	pseudogene	2286651	2287533	.	+	.	ID=gene-ML1902;Name=ML1902;gbkey=Gene;gene=ML1902;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2286651	2287533	.	+	0	ID=cds-ML1902;Parent=gene-ML1902;Note=Possible pseudogene of M. tuberculosis orthologue mmaA3;gbkey=CDS;gene=ML1902;product=methyl mycolic acid synthase 3 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	2287614	2287618	.	+	.	ID=id-AL450380.1:2287614..2287618;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	2287631	2288527	.	+	.	ID=gene-mmaA4;Name=mmaA4;gbkey=Gene;gene=mmaA4;gene_biotype=protein_coding;gene_synonym=ML1903
AL450380.1	EMBL	CDS	2287631	2288527	.	+	0	ID=cds-CAC30857.1;Parent=gene-mmaA4;Dbxref=GOA:Q9CBK3,InterPro:IPR003333,InterPro:IPR029063,UniProtKB/TrEMBL:Q9CBK3,NCBI_GP:CAC30857.1;Name=CAC30857.1;Note=Similar to M. tuberculosis methyl mycolic acid synthase 4 Rv0642C TR:P72028 (EMBL:U66108) (301 aa)%3B Fasta score E(): 0%2C 87.5%25 identity in 296 aa overlap%2C and to many others e.g. M. tuberculosis cyclopropane-fatty-acyl-phospholipid synthase 1 SW:CFA1_MYCTU (Q11195) (287 aa)%3B Fasta score E(): 0%2C 57.0%25 identity in 286 aa overlap.%3B~Similar to ML2459%2C ML2426 and ML2334;gbkey=CDS;gene=mmaA4;product=methyl mycolic acid synthase 4;protein_id=CAC30857.1;transl_table=11
AL450380.1	EMBL	gene	2290309	2291016	.	-	.	ID=gene-rplA;Name=rplA;gbkey=Gene;gene=rplA;gene_biotype=protein_coding;gene_synonym=ML1904
AL450380.1	EMBL	CDS	2290309	2291016	.	-	0	ID=cds-CAC30858.1;Parent=gene-rplA;Dbxref=GOA:Q9CBK2,InterPro:IPR002143,InterPro:IPR005878,InterPro:IPR016094,InterPro:IPR016095,InterPro:IPR023673,InterPro:IPR023674,InterPro:IPR028364,NCBI_GP:CAC30858.1;Name=CAC30858.1;Note=Similar to M. tuberculosis 50S ribosomal protein L1 RV0641 SW:RL1_MYCTU (P96932) (235 aa)%3B Fasta score E(): 0%2C 93.6%25 identity in 235 aa overlap. Contains Pfam match to entry PF00687 Ribosomal_L1%2C L1P family of ribosomal proteins.;gbkey=CDS;gene=rplA;product=50S ribosomal protein L1;protein_id=CAC30858.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2290354	2290974	.	-	.	ID=id-rplA;Note=Pfam match to entry PF00687 Ribosomal_L1%2C L1P family of ribosomal proteins%2C score 386.20%2C E-value 3.2e-112;gbkey=misc_feature;gene=rplA
AL450380.1	EMBL	gene	2291148	2291576	.	-	.	ID=gene-rplK;Name=rplK;gbkey=Gene;gene=rplK;gene_biotype=protein_coding;gene_synonym=ML1905
AL450380.1	EMBL	CDS	2291148	2291576	.	-	0	ID=cds-CAC30859.1;Parent=gene-rplK;Dbxref=GOA:Q9CBK1,InterPro:IPR000911,InterPro:IPR006519,InterPro:IPR020783,InterPro:IPR020784,InterPro:IPR020785,NCBI_GP:CAC30859.1;Name=CAC30859.1;Note=Similar to M. tuberculosis 50S ribosomal protein L11 Rv0640 SW:RL11_MYCTU (P96931) (142 aa)%3B Fasta score E(): 0%2C 92.3%25 identity in 142 aa overlap. Contains Pfam match to entry PF00298 Ribosomal_L11%2C Ribosomal protein L11. Contains PS00359 Ribosomal protein L11 signature.;gbkey=CDS;gene=rplK;product=50S ribosomal protein L11;protein_id=CAC30859.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2291151	2291546	.	-	.	ID=id-rplK;Note=Pfam match to entry PF00298 Ribosomal_L11%2C Ribosomal protein L11%2C score 286.40%2C E-value 3.7e-82;gbkey=misc_feature;gene=rplK
AL450380.1	EMBL	sequence_feature	2291151	2291195	.	-	.	ID=id-rplK-2;Note=PS00359 Ribosomal protein L11 signature;gbkey=misc_feature;gene=rplK
AL450380.1	EMBL	gene	2291604	2292290	.	-	.	ID=gene-nusG;Name=nusG;gbkey=Gene;gene=nusG;gene_biotype=protein_coding;gene_synonym=ML1906
AL450380.1	EMBL	CDS	2291604	2292290	.	-	0	ID=cds-CAC30860.1;Parent=gene-nusG;Dbxref=GOA:Q9CBK0,InterPro:IPR001062,InterPro:IPR005824,InterPro:IPR006645,InterPro:IPR008991,InterPro:IPR014722,InterPro:IPR015869,NCBI_GP:CAC30860.1;Name=CAC30860.1;Note=Similar to M. tuberculosis transcription antitermination protein nusG Rv0639 TR:P96930 (EMBL:Z92772) (238 aa)%3B Fasta score E(): 0%2C 93.4%25 identity in 211 aa overlap%2C and to many others e.g. Streptomyces griseus. Contains PS01014 Transcription termination factor nusG signature.;gbkey=CDS;gene=nusG;product=transcription antitermination protein nusG;protein_id=CAC30860.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2291631	2291660	.	-	.	ID=id-nusG;Note=PS01014 Transcription termination factor nusG signature;gbkey=misc_feature;gene=nusG
AL450380.1	EMBL	gene	2292368	2292808	.	-	.	ID=gene-secE;Name=secE;gbkey=Gene;gene=secE;gene_biotype=protein_coding;gene_synonym=ML1907
AL450380.1	EMBL	CDS	2292368	2292808	.	-	0	ID=cds-CAC30861.1;Parent=gene-secE;Dbxref=GOA:Q9CBJ9,InterPro:IPR001901,InterPro:IPR005807,InterPro:IPR022943,NCBI_GP:CAC30861.1;Name=CAC30861.1;Note=Similar to M. tuberculosis preprotein translocase SECE subunit RV0638 SW:SECE_MYCTU (P96929) (161 aa)%3B Fasta score E(): 2.2e-19%2C 61.3%25 identity in 160 aa overlap%2C and to many others e.g. Streptomyces virginiae SW:SECE_STRVG (P36691) (93 aa)%3B Fasta score E(): 7.9e-08%2C 41.0%25 identity in 78 aa overlap. Contains Pfam match to entry PF00584 SecE%2C SecE/Sec61-gamma subunits of protein translocation complex. Contains PS01067 Protein secE/sec61-gamma signature.;gbkey=CDS;gene=secE;product=SecE preprotein translocase;protein_id=CAC30861.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2292374	2292544	.	-	.	ID=id-secE;Note=Pfam match to entry PF00584 SecE%2C SecE/Sec61-gamma subunits of protein translocation complex%2C score 64.80%2C E-value 1.8e-15;gbkey=misc_feature;gene=secE
AL450380.1	EMBL	sequence_feature	2292446	2292532	.	-	.	ID=id-secE-2;Note=PS01067 Protein secE/sec61-gamma signature;gbkey=misc_feature;gene=secE
AL450380.1	EMBL	gene	2292901	2292973	.	-	.	ID=gene-trpT;Name=trpT;gbkey=Gene;gene=trpT;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	2292901	2292973	.	-	.	ID=rna-trpT;Parent=gene-trpT;Note=tRNA Trp anticodon CCA%2C Cove score 79.38;gbkey=tRNA;gene=trpT;product=tRNA-Trp
AL450380.1	EMBL	exon	2292901	2292973	.	-	.	ID=exon-trpT-1;Parent=rna-trpT;Note=tRNA Trp anticodon CCA%2C Cove score 79.38;gbkey=tRNA;gene=trpT;product=tRNA-Trp
AL450380.1	EMBL	gene	2293144	2293644	.	-	.	ID=gene-ML1908;Name=ML1908;gbkey=Gene;gene=ML1908;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2293144	2293644	.	-	0	ID=cds-CAC30862.1;Parent=gene-ML1908;Dbxref=InterPro:IPR016709,InterPro:IPR029069,NCBI_GP:CAC30862.1;Name=CAC30862.1;Note=Similar to M. tuberculosis hypothetical protein Rv0637 TR:P96928 (EMBL:Z92772) (166 aa)%3B Fasta score E(): 0%2C 88.6%25 identity in 166 aa overlap%2C and to others e.g. Streptomyces coelicolor SCD82.07 TR:CAB77410 (EMBL:AL160431) (150 aa)%3B Fasta score E(): 4.7e-11%2C 29.3%25 identity in 150 aa overlap.%3B~Similar to ML1910 and ML2425;gbkey=CDS;gene=ML1908;product=conserved hypothetical protein;protein_id=CAC30862.1;transl_table=11
AL450380.1	EMBL	gene	2293648	2294076	.	-	.	ID=gene-ML1909;Name=ML1909;gbkey=Gene;gene=ML1909;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2293648	2294076	.	-	0	ID=cds-CAC30863.1;Parent=gene-ML1909;Dbxref=InterPro:IPR002539,InterPro:IPR029069,UniProtKB/TrEMBL:Q9CBJ7,NCBI_GP:CAC30863.1;Name=CAC30863.1;Note=Similar to M. tuberculosis hypothetical protein Rv0636 TR:P96927 (EMBL:Z92772) (142 aa)%3B Fasta score E(): 0%2C 93.0%25 identity in 142 aa overlap. Contains Pfam match to entry PF01575 MaoC_dehydratas%2C MaoC like domain.%3B~Similar to and ML2566;gbkey=CDS;gene=ML1909;product=conserved hypothetical protein;protein_id=CAC30863.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2293693	2294064	.	-	.	ID=id-ML1909;Note=Pfam match to entry PF01575 MaoC_dehydratas%2C MaoC like domain%2C score 135.20%2C E-value 1.2e-36;gbkey=misc_feature;gene=ML1909
AL450380.1	EMBL	gene	2294063	2294542	.	-	.	ID=gene-ML1910;Name=ML1910;gbkey=Gene;gene=ML1910;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2294063	2294542	.	-	0	ID=cds-CAC30864.1;Parent=gene-ML1910;Dbxref=InterPro:IPR016709,InterPro:IPR029069,NCBI_GP:CAC30864.1;Name=CAC30864.1;Note=Similar to Mycobacterium tuberculosis hypothetical proteins e.g. Rv0635 or MTCY20H10.16 TR:P96926 (EMBL:Z92772) (158 aa) fasta scores: E(): 0%2C 84.9%25 id in 159 aa. Also similar to Streptomyces coelicolor hypothetical protein SCD82.07 TR:CAB77410 (EMBL:AL160431) (150 aa) fasta scores: E(): 1.9e-11%2C 30.4%25 id in 148 aa.;gbkey=CDS;gene=ML1910;product=conserved hypothetical protein;protein_id=CAC30864.1;transl_table=11
AL450380.1	EMBL	gene	2294589	2294756	.	-	.	ID=gene-rpmG2;Name=rpmG2;gbkey=Gene;gene=rpmG2;gene_biotype=protein_coding;gene_synonym=ML1911
AL450380.1	EMBL	CDS	2294589	2294756	.	-	0	ID=cds-CAC30865.1;Parent=gene-rpmG2;Dbxref=GOA:Q9CBJ5,InterPro:IPR001705,InterPro:IPR011332,InterPro:IPR018264,NCBI_GP:CAC30865.1;Name=CAC30865.1;Note=Similar to M. tuberculosis 50S ribosomal protein L33 type 2 SW:R332_MYCTU (P96925) (55 aa)%3B Fasta score E(): 5.5e-24%2C 92.7%25 identity in 55 aa overlap. Contains PS00582 Ribosomal protein L33 signature.;gbkey=CDS;gene=rpmG2;product=50S ribosomal protein L33 type 2;protein_id=CAC30865.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2294631	2294690	.	-	.	ID=id-rpmG2;Note=PS00582 Ribosomal protein L33 signature;gbkey=misc_feature;gene=rpmG2
AL450380.1	EMBL	gene	2294800	2294876	.	-	.	ID=gene-metT;Name=metT;gbkey=Gene;gene=metT;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	2294800	2294876	.	-	.	ID=rna-metT;Parent=gene-metT;Note=tRNA Met anticodon CAT%2C Cove score 89.68;gbkey=tRNA;gene=metT;product=tRNA-Met
AL450380.1	EMBL	exon	2294800	2294876	.	-	.	ID=exon-metT-1;Parent=rna-metT;Note=tRNA Met anticodon CAT%2C Cove score 89.68;gbkey=tRNA;gene=metT;product=tRNA-Met
AL450380.1	EMBL	gene	2294930	2295002	.	-	.	ID=gene-thrT;Name=thrT;gbkey=Gene;gene=thrT;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	2294930	2295002	.	-	.	ID=rna-thrT;Parent=gene-thrT;Note=tRNA Thr anticodon GGT%2C Cove score 79.74;gbkey=tRNA;gene=thrT;product=tRNA-Thr
AL450380.1	EMBL	exon	2294930	2295002	.	-	.	ID=exon-thrT-1;Parent=rna-thrT;Note=tRNA Thr anticodon GGT%2C Cove score 79.74;gbkey=tRNA;gene=thrT;product=tRNA-Thr
AL450380.1	EMBL	gene	2295156	2295371	.	-	.	ID=gene-ML1911A;Name=ML1911A;gbkey=Gene;gene=ML1911A;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2295156	2295371	.	-	0	ID=cds-CAC30866.1;Parent=gene-ML1911A;Dbxref=InterPro:IPR019239,UniProtKB/TrEMBL:Q7AQ19,NCBI_GP:CAC30866.1;Name=CAC30866.1;Note=Orthologous to M. tuberculosis Rv0634A but may be pseudogene as Rv0634A is predicted to be 13 aa longer. Also similar to M. tuberculosis Rv1560%2C sp|Q10771|YF60_MYCTU HYPOTHETICAL 8.2 KDA PROTEIN RV1560 (72 aa) E(): 0.0025%3B 47.500%25 identity in 40 aa overlap;gbkey=CDS;gene=ML1911A;product=conserved hypothetical protein;protein_id=CAC30866.1;transl_table=11
AL450380.1	EMBL	gene	2295524	2296240	.	+	.	ID=gene-ML1912;Name=ML1912;gbkey=Gene;gene=ML1912;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2295524	2296240	.	+	0	ID=cds-CAC30867.1;Parent=gene-ML1912;Dbxref=InterPro:IPR001279,UniProtKB/TrEMBL:Q9CBJ4,NCBI_GP:CAC30867.1;Name=CAC30867.1;Note=Similar to M. tuberculosis putative glyoxylase II Rv0634c%2C to hypothetical proteins belonging to the glyoxalase II family e.g. Escherichia coli SW:YCBL_ECOLI (P75849) (215 aa)%3B Fasta score E(): 3.5e-12%2C 32.5%25 identity in 203 aa overlap. Contains Pfam match to entry PF00753 lactamase_B%2C Metallo-beta-lactamase superfamily.%3B~Similar to ML0493%2C ML2303 and ML1391;gbkey=CDS;gene=ML1912;product=putative glyoxylase II;protein_id=CAC30867.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2295596	2296135	.	+	.	ID=id-ML1912;Note=Pfam match to entry PF00753 lactamase_B%2C Metallo-beta-lactamase superfamily%2C score 149.50%2C E-value 5.7e-41;gbkey=misc_feature;gene=ML1912
AL450380.1	EMBL	pseudogene	2296429	2297123	.	+	.	ID=gene-echA3;Name=echA3;gbkey=Gene;gene=echA3;gene_biotype=pseudogene;gene_synonym=ML1913;pseudo=true
AL450380.1	EMBL	CDS	2296429	2297123	.	+	0	ID=cds-echA3;Parent=gene-echA3;Note=Possible pseudogene of M. tuberculosis orthologue echA3 (Best blastx score 350);gbkey=CDS;gene=echA3;product=enoyl-CoA hydratase/isomerase superfamily (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2297459	2297942	.	+	.	ID=gene-lpqN;Name=lpqN;gbkey=Gene;gene=lpqN;gene_biotype=pseudogene;gene_synonym=ML1914;pseudo=true
AL450380.1	EMBL	CDS	2297459	2297942	.	+	0	ID=cds-lpqN;Parent=gene-lpqN;Note=Possible pseudogene of M. tuberculosis orthologue lpqN (Best blastx score 198);gbkey=CDS;gene=lpqN;product=equivalent to MKU20446_1 MK35 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2298471	2298815	.	+	.	ID=gene-ML1915;Name=ML1915;gbkey=Gene;gene=ML1915;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2298471	2298815	.	+	0	ID=cds-CAC30870.1;Parent=gene-ML1915;Dbxref=UniProtKB/TrEMBL:Q9CBJ3,NCBI_GP:CAC30870.1;Name=CAC30870.1;Note=unknown.;gbkey=CDS;gene=ML1915;product=hypothetical protein;protein_id=CAC30870.1;transl_table=11
AL450380.1	EMBL	pseudogene	2299916	2300390	.	+	.	ID=gene-ML1916;Name=ML1916;gbkey=Gene;gene=ML1916;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2299916	2300390	.	+	0	ID=cds-ML1916;Parent=gene-ML1916;Note=Possible pseudogene of M. tuberculosis orthologue Rv0580c (Best blastx score 335);gbkey=CDS;gene=ML1916;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2300554	2301247	.	-	.	ID=id-AL450380.1:2300554..2301247;Note=Dispersed repeat%2C RLEP%2C copy 31;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2301177	2301794	.	+	.	ID=gene-ML1917;Name=ML1917;gbkey=Gene;gene=ML1917;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2301177	2301794	.	+	0	ID=cds-ML1917;Parent=gene-ML1917;Note=Possible pseudogene of M. tuberculosis orthologue Rv3586 (Best blastx score 150);gbkey=CDS;gene=ML1917;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2301835	2302626	.	-	.	ID=gene-ML1918;Name=ML1918;gbkey=Gene;gene=ML1918;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2301835	2302626	.	-	0	ID=cds-CAC30873.1;Parent=gene-ML1918;Dbxref=UniProtKB/TrEMBL:Q9CBJ2,NCBI_GP:CAC30873.1;Name=CAC30873.1;Note=Similar to M. tuberculosis hypothetical protein Rv3587c TR:O53572 (EMBL:AL022075) (264 aa)%3B Fasta score E(): 0%2C 77.5%25 identity in 267 aa overlap. Contains probable transmembrane domain.;gbkey=CDS;gene=ML1918;product=conserved hypothetical membrane protein;protein_id=CAC30873.1;transl_table=11
AL450380.1	EMBL	gene	2302765	2303406	.	-	.	ID=gene-ML1919;Name=ML1919;gbkey=Gene;gene=ML1919;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2302765	2303406	.	-	0	ID=cds-CAC30874.1;Parent=gene-ML1919;Dbxref=GOA:Q9CBJ1,InterPro:IPR001765,InterPro:IPR015892,UniProtKB/TrEMBL:Q9CBJ1,NCBI_GP:CAC30874.1;Name=CAC30874.1;Note=Similar to M. tuberculosis putative carbonic anhydrase Rv3588c TR:O53573 (EMBL:AL022075) (207 aa)%3B Fasta score E(): 0%2C 84.5%25 identity in 207 aa overlap%2C and to others e.g. Chlamydomonas reinhardtii carbonic anhydrase precursor TR:Q39589 (EMBL:U41189) (267 aa)%3B Fasta score E(): 7.9e-19%2C 34.4%25 identity in 192 aa overlap. Contains Pfam match to entry PF00484 Pro_CA%2C Prokaryotic-type carbonic anhydrases. Contains PS00704 Prokaryotic-type carbonic anhydrases signature 1. Contains PS00705 Prokaryotic-type carbonic anhydrases signature 2.;gbkey=CDS;gene=ML1919;product=putative carbonic anhydrase;protein_id=CAC30874.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2303062	2303295	.	-	.	ID=id-ML1919;Note=Pfam match to entry PF00484 Pro_CA%2C Prokaryotic-type carbonic anhydrases%2C score 66.00%2C E-value 4.1e-18;gbkey=misc_feature;gene=ML1919
AL450380.1	EMBL	sequence_feature	2303083	2303145	.	-	.	ID=id-ML1919-2;Note=PS00705 Prokaryotic-type carbonic anhydrases signature 2;gbkey=misc_feature;gene=ML1919
AL450380.1	EMBL	sequence_feature	2303233	2303256	.	-	.	ID=id-ML1919-3;Note=PS00704 Prokaryotic-type carbonic anhydrases signature 1;gbkey=misc_feature;gene=ML1919
AL450380.1	EMBL	gene	2303405	2304298	.	+	.	ID=gene-mutY;Name=mutY;gbkey=Gene;gene=mutY;gene_biotype=protein_coding;gene_synonym=ML1920
AL450380.1	EMBL	CDS	2303405	2304298	.	+	0	ID=cds-CAC30875.1;Parent=gene-mutY;Dbxref=GOA:Q9CBJ0,InterPro:IPR003265,InterPro:IPR003651,InterPro:IPR011257,InterPro:IPR023170,UniProtKB/TrEMBL:Q9CBJ0,NCBI_GP:CAC30875.1;Name=CAC30875.1;Note=Similar to M. tuberculosis probable DNA glycosylase Rv3589 TR:O53574 (EMBL:AL022075) (304 aa)%3B Fasta score E(): 0%2C 74.9%25 identity in 303 aa overlap%2C and to many others e.g. Escherichia coli A/G-specific adenine glycosylase mutY SW:MUTY_ECOLI (P17802) (350 aa)%3B Fasta score E(): 1.8e-21%2C 33.2%25 identity in 244 aa overlap. Contains Pfam match to entry PF00730 Endonuclease_3%2C Endonuclease III.%3B~Similar to and ML2301;gbkey=CDS;gene=mutY;product=probable DNA glycosylase;protein_id=CAC30875.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2303510	2304043	.	+	.	ID=id-mutY;Note=Pfam match to entry PF00730 Endonuclease_3%2C Endonuclease III%2C score 143.40%2C E-value 4e-39;gbkey=misc_feature;gene=mutY
AL450380.1	EMBL	gene	2304307	2305077	.	-	.	ID=gene-ML1921;Name=ML1921;gbkey=Gene;gene=ML1921;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2304307	2305077	.	-	0	ID=cds-CAC30876.1;Parent=gene-ML1921;Dbxref=InterPro:IPR029058,UniProtKB/TrEMBL:Q9CBI9,NCBI_GP:CAC30876.1;Name=CAC30876.1;Note=Similar to M. tuberculosis conserved hypothetical protein Rv3591c TR:O06157 (EMBL:Z95555) (257 aa)%3B Fasta score E(): 0%2C 79.0%25 identity in 248 aa overlap.%3B~Similar to and ML2269;gbkey=CDS;gene=ML1921;product=conserved hypothetical protein;protein_id=CAC30876.1;transl_table=11
AL450380.1	EMBL	gene	2305203	2305520	.	+	.	ID=gene-ML1922;Name=ML1922;gbkey=Gene;gene=ML1922;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2305203	2305520	.	+	0	ID=cds-CAC30877.1;Parent=gene-ML1922;Dbxref=InterPro:IPR007138,InterPro:IPR011008,UniProtKB/TrEMBL:Q9CBI8,NCBI_GP:CAC30877.1;Name=CAC30877.1;Note=Similar to M. tuberculosis conserved hypothetical protein Rv3592 TR:O06156 (EMBL:Z95555) (105 aa)%3B Fasta score E(): 0%2C 84.6%25 identity in 104 aa overlap%2C and to others e.g. Bacillus subtilis hypothetical protein SW:YHGC_BACSU (L10630) (166 aa)%3B Fasta score E(): 5.2e-06%2C 40.8%25 identity in 71 aa overlap.;gbkey=CDS;gene=ML1922;product=conserved hypothetical protein;protein_id=CAC30877.1;transl_table=11
AL450380.1	EMBL	gene	2305495	2306859	.	+	.	ID=gene-lpqF;Name=lpqF;gbkey=Gene;gene=lpqF;gene_biotype=protein_coding;gene_synonym=ML1923
AL450380.1	EMBL	CDS	2305495	2306859	.	+	0	ID=cds-CAC30878.1;Parent=gene-lpqF;Dbxref=InterPro:IPR012338,UniProtKB/TrEMBL:Q9CBI7,NCBI_GP:CAC30878.1;Name=CAC30878.1;Note=Similar to M. tuberculosis lipoprotein Rv3593 lpqF TR:O06155 (EMBL:Z95555) (452 aa)%3B Fasta score E(): 0%2C 79.2%25 identity in 451 aa overlap%2C and weakly to several beta-lactamase proteins e.g. Xanthomonas maltophilia chromosomic class A beta-lactamase TR:Q9X5A7 (EMBL:AF123246) (304 aa)%3B Fasta score E(): 0.019%2C 26.2%25 identity in 260 aa overlap.;gbkey=CDS;gene=lpqF;product=probale secreted protein;protein_id=CAC30878.1;transl_table=11
AL450380.1	EMBL	repeat_region	2308927	2309690	.	+	.	ID=id-AL450380.1:2308927..2309690;Note=Dispersed repeat%2C RLEP%2C copy 32;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2309706	2310726	.	-	.	ID=gene-ML1924;Name=ML1924;gbkey=Gene;gene=ML1924;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2309706	2310726	.	-	0	ID=cds-ML1924;Parent=gene-ML1924;Note=Possible pseudogene of M. tuberculosis orthologue Rv0433 (Best blastx score 802);gbkey=CDS;gene=ML1924;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2310771	2311493	.	-	.	ID=gene-sodC;Name=sodC;gbkey=Gene;gene=sodC;gene_biotype=protein_coding;gene_synonym=ML1925
AL450380.1	EMBL	CDS	2310771	2311493	.	-	0	ID=cds-CAC30880.1;Parent=gene-sodC;Dbxref=GOA:Q9CBI6,InterPro:IPR001424,InterPro:IPR018152,NCBI_GP:CAC30880.1;Name=CAC30880.1;Note=Similar to M. tuberculosis superoxide dismutase precursor (Cu-Zn) Rv0432 TR:P96278 (EMBL:Z84724) (240 aa)%3B Fasta score E(): 0%2C 72.0%25 identity in 239 aa overlap%2C and weakly similar to many others e.g. Photobacterium leiognathi superoxide dismutase SW:SODC_PHOLE (P00446) (173 aa)%3B Fasta score E(): 0.0018%2C 29.6%25 identity in 189 aa overlap. Contains Pfam match to entry PF00080 sodcu%2C Copper/zinc superoxide dismutase (SODC). Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=sodC;product=superoxide dismutase precursor (Cu-Zn);protein_id=CAC30880.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2310780	2310824	.	-	.	ID=id-sodC;Note=Pfam match to entry PF00080 sodcu%2C Copper/zinc superoxide dismutase (SODC)%2C score 12.50%2C E-value 0.0067;gbkey=misc_feature;gene=sodC
AL450380.1	EMBL	sequence_feature	2311416	2311448	.	-	.	ID=id-sodC-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=sodC
AL450380.1	EMBL	gene	2311558	2312061	.	-	.	ID=gene-ML1926;Name=ML1926;gbkey=Gene;gene=ML1926;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2311558	2312061	.	-	0	ID=cds-CAC30881.1;Parent=gene-ML1926;Dbxref=InterPro:IPR027381,UniProtKB/TrEMBL:Q9CBI5,NCBI_GP:CAC30881.1;Name=CAC30881.1;Note=Similar to M. tuberculosis tuberculin related peptide (AT103) Rv0431 TR:P96277 (EMBL:Z84724) (164 aa)%3B Fasta score E(): 1.6e-32%2C 67.5%25 identity in 163 aa overlap and TR:O69619 (EMBL:D00815) (172 aa)%3B Fasta score E(): 1.5e-32%2C 67.1%25 identity in 164 aa overlap.;gbkey=CDS;gene=ML1926;product=tuberculin related peptide (AT103);protein_id=CAC30881.1;transl_table=11
AL450380.1	EMBL	gene	2312092	2312400	.	-	.	ID=gene-ML1927;Name=ML1927;gbkey=Gene;gene=ML1927;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2312092	2312400	.	-	0	ID=cds-CAC30882.1;Parent=gene-ML1927;Dbxref=InterPro:IPR021678,UniProtKB/TrEMBL:Q9CBI4,NCBI_GP:CAC30882.1;Name=CAC30882.1;Note=Similar to M. tuberculosis hypothetical protein Rv0430 TR:P96276 (EMBL:Z84724) (102 aa)%3B Fasta score E(): 0%2C 93.1%25 identity in 102 aa overlap%2C and to Streptomyces coelicolor hypothetical protein SCD95A.20 TR:CAB93047 (EMBL:AL357432) (84 aa)%3B Fasta score E(): 4.1e-11%2C 52.8%25 identity in 72 aa overlap.;gbkey=CDS;gene=ML1927;product=conserved hypothetical protein;protein_id=CAC30882.1;transl_table=11
AL450380.1	EMBL	gene	2312431	2312568	.	-	.	ID=gene-ML1928;Name=ML1928;gbkey=Gene;gene=ML1928;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2312431	2312568	.	-	0	ID=cds-CAC30883.1;Parent=gene-ML1928;Dbxref=UniProtKB/TrEMBL:Q9CBI3,NCBI_GP:CAC30883.1;Name=CAC30883.1;Note=Unknown function.;gbkey=CDS;gene=ML1928;product=hypothetical protein;protein_id=CAC30883.1;transl_table=11
AL450380.1	EMBL	gene	2312615	2313208	.	+	.	ID=gene-def;Name=def;gbkey=Gene;gene=def;gene_biotype=protein_coding;gene_synonym=ML1929
AL450380.1	EMBL	CDS	2312615	2313208	.	+	0	ID=cds-CAC30884.1;Parent=gene-def;Dbxref=GOA:Q9CBI2,InterPro:IPR000181,InterPro:IPR023635,NCBI_GP:CAC30884.1;Name=CAC30884.1;Note=Similar to M. tuberculosis polypeptide deformylase Rv0429C SW:DEF_MYCTU (P96275) (197 aa)%3B Fasta score E(): 0%2C 83.7%25 identity in 196 aa overlap%2C and to many others e.g Streptomyces coelicolor polypeptide deformylase SW:DEF_STRCO (Q9XAQ2) (208 aa)%3B Fasta score E(): 5.9e-20%2C 43.8%25 identity in 176 aa overlap. Contains Pfam match to entry PF01327 Pep_deformylase%2C Polypeptide deformylase.;gbkey=CDS;gene=def;product=polypeptide deformylase;protein_id=CAC30884.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2312627	2313088	.	+	.	ID=id-def;Note=Pfam match to entry PF01327 Pep_deformylase%2C Polypeptide deformylase%2C score 229.70%2C E-value 4.3e-65;gbkey=misc_feature;gene=def
AL450380.1	EMBL	pseudogene	2313258	2313663	.	+	.	ID=gene-ML1930;Name=ML1930;gbkey=Gene;gene=ML1930;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2313258	2313663	.	+	0	ID=cds-ML1930;Parent=gene-ML1930;Note=Possible pseudogene of M. tuberculosis orthologue Rv0428c (Best blastx score 239);gbkey=CDS;gene=ML1930;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2313719	2314551	.	+	.	ID=gene-xthA;Name=xthA;gbkey=Gene;gene=xthA;gene_biotype=pseudogene;gene_synonym=ML1931;pseudo=true
AL450380.1	EMBL	CDS	2313719	2314551	.	+	0	ID=cds-xthA;Parent=gene-xthA;Note=Possible pseudogene of M. tuberculosis orthologue xthA (Best blastx score 398);gbkey=CDS;gene=xthA;product=exodeoxyribonuclease III (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2314821	2315234	.	+	.	ID=gene-ML1932;Name=ML1932;gbkey=Gene;gene=ML1932;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2314821	2315234	.	+	0	ID=cds-CAC30887.1;Parent=gene-ML1932;Dbxref=UniProtKB/TrEMBL:Q9CBI1,NCBI_GP:CAC30887.1;Name=CAC30887.1;Note=Similar to M. tuberculosis hypothetical protein Rv0426c TR:P96272 (EMBL:Z84724) (147 aa)%3B Fasta score E(): 1.6e-22%2C 60.4%25 identity in 139 aa overlap.;gbkey=CDS;gene=ML1932;product=conserved hypothetical protein;protein_id=CAC30887.1;transl_table=11
AL450380.1	EMBL	pseudogene	2315479	2319478	.	+	.	ID=gene-ctpH;Name=ctpH;gbkey=Gene;gene=ctpH;gene_biotype=pseudogene;gene_synonym=ML1933;pseudo=true
AL450380.1	EMBL	CDS	2315479	2319478	.	+	0	ID=cds-ctpH;Parent=gene-ctpH;Note=Possible pseudogene of M. tuberculosis orthologue ctpH (Best blastx score 523);gbkey=CDS;gene=ctpH;product=putative cation-transporting (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2319572	2319811	.	+	.	ID=gene-ML1934;Name=ML1934;gbkey=Gene;gene=ML1934;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2319572	2319811	.	+	0	ID=cds-ML1934;Parent=gene-ML1934;Note=Possible pseudogene of M. tuberculosis orthologue Rv0424c (Best blastx score 230);gbkey=CDS;gene=ML1934;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2320076	2321090	.	-	.	ID=gene-PPE-9;Name=PPE;gbkey=Gene;gene=PPE;gene_biotype=pseudogene;gene_synonym=ML1935;pseudo=true
AL450380.1	EMBL	CDS	2320076	2321090	.	-	0	ID=cds-PPE-7;Parent=gene-PPE-9;Note=Possible pseudogene of M. tuberculosis orthologue PPE (Best blastx score 197);gbkey=CDS;gene=PPE;product=PPE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2322199	2323269	.	-	.	ID=gene-ML1936;Name=ML1936;gbkey=Gene;gene=ML1936;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2322199	2323269	.	-	0	ID=cds-CAC30891.1;Parent=gene-ML1936;Dbxref=GOA:Q7AQ18,InterPro:IPR004396,InterPro:IPR006073,InterPro:IPR012675,InterPro:IPR012676,InterPro:IPR013029,InterPro:IPR023192,InterPro:IPR027417,UniProtKB/TrEMBL:Q7AQ18,NCBI_GP:CAC30891.1;Name=CAC30891.1;Note=Similar to M. tuberculosis conserved hypothetical protein Rv1112 TR:O53459 (EMBL:AL021897) (357 aa)%3B Fasta score E(): 0%2C 85.9%25 identity in 354 aa overlap%2C and to many others e.g. Haemophilus influenzae probable GTP-binding protein SW:YCHF_HAEIN (P44681) (362 aa)%3B Fasta score E(): 0%2C 53.8%25 identity in 355 aa overlap. Contains PS00017 ATP/GTP-binding site motif A (P-loop).%3B~Similar to and ML1465;gbkey=CDS;gene=ML1936;product=conserved hypothetical protein;protein_id=CAC30891.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2323222	2323245	.	-	.	ID=id-ML1936;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1936
AL450380.1	EMBL	gene	2323320	2324552	.	+	.	ID=gene-ML1937;Name=ML1937;gbkey=Gene;gene=ML1937;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2323320	2324552	.	+	0	ID=cds-CAC30892.1;Parent=gene-ML1937;Dbxref=UniProtKB/TrEMBL:Q9CBI0,NCBI_GP:CAC30892.1;Name=CAC30892.1;Note=Similar to M. tuberculosis hypothetical protein Rv1111c TR:O86351 (EMBL:AL021897) (304 aa)%3B Fasta score E(): 5.6e-31%2C 45.7%25 identity in 374 aa overlap. The N-terminus contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1937;product=probable integral membrane protein;protein_id=CAC30892.1;transl_table=11
AL450380.1	EMBL	gene	2324563	2325570	.	-	.	ID=gene-lytB2;Name=lytB2;gbkey=Gene;gene=lytB2;gene_biotype=protein_coding;gene_synonym=ML1938
AL450380.1	EMBL	CDS	2324563	2325570	.	-	0	ID=cds-CAC30893.1;Parent=gene-lytB2;Dbxref=GOA:Q9X781,InterPro:IPR003451,NCBI_GP:CAC30893.1;Name=CAC30893.1;Note=Similar to M. tuberculosis LytB protein homolog lytB2 Rv1110 SW:LYB1_MYCTU (O53458) (335 aa)%3B Fasta score E(): 0%2C 82.9%25 identity in 333 aa overlap%2C and to many others e.g. Escherichia coli LytB protein SW:LYTB_ECOLI (P22565) (316 aa)%3B Fasta score E(): 0%2C 51.5%25 identity in 309 aa overlap.;gbkey=CDS;gene=lytB2;product=LytB homolog;protein_id=CAC30893.1;transl_table=11
AL450380.1	EMBL	gene	2325739	2326356	.	+	.	ID=gene-ML1939;Name=ML1939;gbkey=Gene;gene=ML1939;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2325739	2326356	.	+	0	ID=cds-CAC30894.1;Parent=gene-ML1939;Dbxref=UniProtKB/TrEMBL:Q7AQ17,NCBI_GP:CAC30894.1;Name=CAC30894.1;Note=Similar to M. tuberculosis hypothetical protein Rv1109c.;gbkey=CDS;gene=ML1939;product=conserved hypothetical protein;protein_id=CAC30894.1;transl_table=11
AL450380.1	EMBL	gene	2326353	2327639	.	+	.	ID=gene-xseA;Name=xseA;gbkey=Gene;gene=xseA;gene_biotype=protein_coding;gene_synonym=ML1940
AL450380.1	EMBL	CDS	2326353	2327639	.	+	0	ID=cds-CAC30895.1;Parent=gene-xseA;Dbxref=GOA:Q9X783,InterPro:IPR003753,InterPro:IPR020579,InterPro:IPR025824,NCBI_GP:CAC30895.1;Name=CAC30895.1;Note=Similar to M. tuberculosis exonuclease VII large subunit xseA Rv1108c%2C and to many others e.g. Escherichia coli exodeoxyribonuclease large subunit SW:EX7L_ECOLI (P04994) (456 aa)%3B Fasta score E(): 1.7e-28%2C 31.8%25 identity in 425 aa overlap.;gbkey=CDS;gene=xseA;product=exonuclease VII large subunit;protein_id=CAC30895.1;transl_table=11
AL450380.1	EMBL	gene	2327629	2327892	.	+	.	ID=gene-xseB;Name=xseB;gbkey=Gene;gene=xseB;gene_biotype=protein_coding;gene_synonym=ML1941
AL450380.1	EMBL	CDS	2327629	2327892	.	+	0	ID=cds-CAC30896.1;Parent=gene-xseB;Dbxref=GOA:Q9X784,InterPro:IPR003761,NCBI_GP:CAC30896.1;Name=CAC30896.1;Note=Similar to M. tuberculosis exonuclease VII small subunit xseB Rv1107c%2C and to many others e.g. Escherichia coli exodeoxyribonuclease large subunit SW:EX7S_ECOLI (P22938) (79 aa)%3B Fasta score E(): 0.021%2C 41.8%25 identity in 55 aa overlap.;gbkey=CDS;gene=xseB;product=exonuclease VII small subunit;protein_id=CAC30896.1;transl_table=11
AL450380.1	EMBL	gene	2327943	2329073	.	+	.	ID=gene-ML1942;Name=ML1942;gbkey=Gene;gene=ML1942;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2327943	2329073	.	+	0	ID=cds-CAC30897.1;Parent=gene-ML1942;Dbxref=GOA:Q7AQ16,InterPro:IPR002225,InterPro:IPR016040,UniProtKB/TrEMBL:Q7AQ16,NCBI_GP:CAC30897.1;Name=CAC30897.1;Note=Similar to M. tuberculosis cholesterol dehydrogenase Rv1106c TR:O53454 (EMBL:AL021897) (370 aa)%3B Fasta score E(): 0%2C 75.5%25 identity in 375 aa overlap%2C and to Nocardia sp NAD(P)-dependent cholesterol dehydrogenase TR:Q03704 (EMBL:D90244) (364 aa)%3B Fasta score E(): 0%2C 71.0%25 identity in 366 aa overlap. Contains Pfam match to entry PF01073 3Beta_HSD%2C 3-beta hydroxysteroid dehydrogenase/isomerase family.%3B~Similar to ML0204 and ML1964;gbkey=CDS;gene=ML1942;product=probable cholesterol dehydrogenase;protein_id=CAC30897.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2327955	2329007	.	+	.	ID=id-ML1942;Note=Pfam match to entry PF01073 3Beta_HSD%2C 3-beta hydroxysteroid dehydrogenase/isomerase family%2C score 473.60%2C E-value 1.6e-138;gbkey=misc_feature;gene=ML1942
AL450380.1	EMBL	repeat_region	2329118	2329988	.	+	.	ID=id-AL450380.1:2329118..2329988;Note=871 bp repeat%2C 100%25 identical to region 1212166..1213036;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2329146	2329890	.	-	.	ID=gene-ML1943;Name=ML1943;gbkey=Gene;gene=ML1943;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2329146	2329890	.	-	0	ID=cds-ML1943;Parent=gene-ML1943;Note=Possible pseudogene of M. tuberculosis paralog Rv3714c;gbkey=CDS;gene=ML1943;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2329989	2330949	.	+	.	ID=id-AL450380.1:2329989..2330949;Note=REPLEP region 13%2C 5'-end most similar to REPLEP 9%3B 3'-end most similar to REPLEP 3 and 14;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	2329989	2330033	.	-	.	ID=id-AL450380.1:2329989..2330033;Note=45 bp REPLEP-associated sequence;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	2330034	2330907	.	+	.	ID=id-AL450380.1:2330034..2330907;Note=Dispersed repeat%2C REPLEP%2C copy 13;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2330864	2331237	.	-	.	ID=gene-ML1944;Name=ML1944;gbkey=Gene;gene=ML1944;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2330864	2331237	.	-	0	ID=cds-ML1944;Parent=gene-ML1944;Note=Possible pseudogene of M. tuberculosis paralog Rv3023c (Best blastx score 63);gbkey=CDS;gene=ML1944;product=possible IS1081 transposase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2330908	2330935	.	+	.	ID=id-AL450380.1:2330908..2330935;Note=28 bp subsequence of 45 bp REPLEP-associated sequence;gbkey=repeat_region
AL450380.1	EMBL	gene	2331776	2332549	.	-	.	ID=gene-ML1945;Name=ML1945;gbkey=Gene;gene=ML1945;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2331776	2332549	.	-	0	ID=cds-CAC30900.1;Parent=gene-ML1945;Dbxref=InterPro:IPR025339,UniProtKB/TrEMBL:Q7AQ15,NCBI_GP:CAC30900.1;Name=CAC30900.1;Note=Similar to M. tuberculosis conserved hypothetical protein Rv1100 TR:O53448 (EMBL:AL021897) (233 aa)%3B Fasta score E(): 0%2C 63.8%25 identity in 257 aa overlap.;gbkey=CDS;gene=ML1945;product=conserved hypothetical protein;protein_id=CAC30900.1;transl_table=11
AL450380.1	EMBL	gene	2332629	2333615	.	+	.	ID=gene-ML1946;Name=ML1946;gbkey=Gene;gene=ML1946;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2332629	2333615	.	+	0	ID=cds-CAC30901.1;Parent=gene-ML1946;Dbxref=GOA:Q9CBH9,InterPro:IPR004464,NCBI_GP:CAC30901.1;Name=CAC30901.1;Note=Similar to M. tuberculosis conserved hypothetical protein RV1099C TR:O53447 (EMBL:AL021897) (328 aa)%3B Fasta score E(): 0%2C 93.0%25 identity in 328 aa overlap%2C and to many others of the glpX family e.g. Escherichia coli GLPX protein SW:GLPX_ECOLI (P28860) (336 aa)%3B Fasta score E(): 0%2C 41.7%25 identity in 321 aa overlap.;gbkey=CDS;gene=ML1946;product=conserved hypothetical protein;protein_id=CAC30901.1;transl_table=11
AL450380.1	EMBL	gene	2333624	2335048	.	+	.	ID=gene-fum;Name=fum;gbkey=Gene;gene=fum;gene_biotype=protein_coding;gene_synonym=ML1947
AL450380.1	EMBL	CDS	2333624	2335048	.	+	0	ID=cds-CAC30902.1;Parent=gene-fum;Dbxref=GOA:Q7AQ14,InterPro:IPR000362,InterPro:IPR005677,InterPro:IPR008948,InterPro:IPR018951,InterPro:IPR020557,InterPro:IPR022761,InterPro:IPR024083,UniProtKB/TrEMBL:Q7AQ14,NCBI_GP:CAC30902.1;Name=CAC30902.1;Note=Similar to M. tuberculosis fumarase Rv1098c fum TR:O53446 (EMBL:AL021897) (474 aa)%3B Fasta score E(): 0%2C 89.5%25 identity in 467 aa overlap%2C and to many others e.g Homo sapiens fumarate hydratase%2C mitochondrial precursor SW:FUMH_HUMAN (P07954) (510 aa)%3B Fasta score E(): 0%2C 52.1%25 identity in 461 aa overlap. Contains Pfam match to entry PF00206 lyase_1%2C Lyase. Contains PS00163 Fumarate lyases signature.%3B~Similar to ML1413 and ML2230;gbkey=CDS;gene=fum;product=fumarase;protein_id=CAC30902.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2333684	2334988	.	+	.	ID=id-fum;Note=Pfam match to entry PF00206 lyase_1%2C Lyase%2C score 476.00%2C E-value 3e-139;gbkey=misc_feature;gene=fum
AL450380.1	EMBL	sequence_feature	2334581	2334610	.	+	.	ID=id-fum-2;Note=PS00163 Fumarate lyases signature;gbkey=misc_feature;gene=fum
AL450380.1	EMBL	pseudogene	2335190	2335908	.	-	.	ID=gene-ML1948;Name=ML1948;gbkey=Gene;gene=ML1948;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2335190	2335908	.	-	0	ID=cds-ML1948;Parent=gene-ML1948;Note=Possible pseudogene of M. tuberculosis paralog Rv3645 (Best blastx score 178);gbkey=CDS;gene=ML1948;product=probable transmembrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2336277	2336636	.	-	.	ID=gene-ML1949;Name=ML1949;gbkey=Gene;gene=ML1949;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2336277	2336636	.	-	0	ID=cds-CAC30904.1;Parent=gene-ML1949;Dbxref=UniProtKB/TrEMBL:Q9CBH8,NCBI_GP:CAC30904.1;Name=CAC30904.1;Note=unknown.;gbkey=CDS;gene=ML1949;product=hypothetical protein;protein_id=CAC30904.1;transl_table=11
AL450380.1	EMBL	gene	2336689	2337564	.	-	.	ID=gene-ML1950;Name=ML1950;gbkey=Gene;gene=ML1950;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2336689	2337564	.	-	0	ID=cds-CAC30905.1;Parent=gene-ML1950;Dbxref=GOA:Q7AQ13,InterPro:IPR002509,InterPro:IPR011330,UniProtKB/TrEMBL:Q7AQ13,NCBI_GP:CAC30905.1;Name=CAC30905.1;Note=Similar to M. tuberculosis carbohydrate degrading enzyme Rv1096 TR:O53444 (EMBL:AL021897) (291 aa)%3B Fasta score E(): 0%2C 81.3%25 identity in 289 aa overlap%2C and to others e.g. Streptomyces lividans acetylxylan esterase precursor TR:Q54413 (EMBL:M64552) (335 aa)%3B Fasta score E(): 2.8e-18%2C 31.8%25 identity in 236 aa overlap. Contains Pfam match to entry PF01522 Polysac_deacet%2C Polysaccharide deacetylase.%3B~Similar to and ML2649;gbkey=CDS;gene=ML1950;product=carbohydrate degrading enzyme;protein_id=CAC30905.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2337001	2337432	.	-	.	ID=id-ML1950;Note=Pfam match to entry PF01522 Polysac_deacet%2C Polysaccharide deacetylase%2C score 216.00%2C E-value 5.6e-61;gbkey=misc_feature;gene=ML1950
AL450380.1	EMBL	gene	2337619	2338920	.	-	.	ID=gene-phoH2;Name=phoH2;gbkey=Gene;gene=phoH2;gene_biotype=protein_coding;gene_synonym=ML1951
AL450380.1	EMBL	CDS	2337619	2338920	.	-	0	ID=cds-CAC30906.1;Parent=gene-phoH2;Dbxref=GOA:Q7AQ12,InterPro:IPR002716,InterPro:IPR003714,InterPro:IPR027417,InterPro:IPR029060,UniProtKB/TrEMBL:Q7AQ12,NCBI_GP:CAC30906.1;Name=CAC30906.1;Note=Similar to M. tuberculosis PhoH-like protein phoH2 Rv1095 TR:O53443 (EMBL:AL021897) (433 aa)%3B Fasta score E(): 0%2C 92.8%25 identity in 432 aa overlap%2C and to others e.g. Escherichia coli PhoH-like protein YBEZ SW:PHOL_ECOLI (P77349) (359 aa)%3B Fasta score E(): 1.1e-16%2C 31.2%25 identity in 276 aa overlap. Contains PS00017 ATP/GTP-binding site motif A (P-loop).%3B~Similar to and ML0627;gbkey=CDS;gene=phoH2;product=PhoH-like protein;protein_id=CAC30906.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2338159	2338182	.	-	.	ID=id-phoH2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=phoH2
AL450380.1	EMBL	gene	2339270	2340097	.	-	.	ID=gene-desA2;Name=desA2;gbkey=Gene;gene=desA2;gene_biotype=protein_coding;gene_synonym=ML1952
AL450380.1	EMBL	CDS	2339270	2340097	.	-	0	ID=cds-CAC30907.1;Parent=gene-desA2;Dbxref=GOA:Q7AQ11,InterPro:IPR005067,InterPro:IPR009078,InterPro:IPR012348,UniProtKB/TrEMBL:Q7AQ11,NCBI_GP:CAC30907.1;Name=CAC30907.1;Note=Similar to M. tuberculosis acyl-[ACP] desaturase desA2 TR:O53442 (EMBL:AL021897) (275 aa)%3B Fasta score E(): 0%2C 78.1%25 identity in 274 aa overlap%2C and to others e.g. Gossypium hirsutum (Upland cotton) acyl-[acyl-carrier protein] desaturase precursor SW:STAD_GOSHI (X95988) (397 aa)%3B Fasta score E(): 5.6e-05%2C 23.9%25 identity in 293 aa overlap.%3B~Similar to and ML2185;gbkey=CDS;gene=desA2;product=acyl-[ACP] desaturase;protein_id=CAC30907.1;transl_table=11
AL450380.1	EMBL	gene	2340154	2341434	.	-	.	ID=gene-glyA;Name=glyA;gbkey=Gene;gene=glyA;gene_biotype=protein_coding;gene_synonym=ML1953
AL450380.1	EMBL	CDS	2340154	2341434	.	-	0	ID=cds-CAC30908.1;Parent=gene-glyA;Dbxref=GOA:Q9X794,InterPro:IPR001085,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR019798,NCBI_GP:CAC30908.1;Name=CAC30908.1;Note=Similar to M. tuberculosis serine hydroxymethyltransferase glyA Rv1093 SW:GLA1_MYCTU (O53441) (426 aa)%3B Fasta score E(): 0%2C 89.9%25 identity in 426 aa overlap%2C and to many others e.g. Escherichia coli serine hydroxymethyltransferase SW:GLYA_ECOLI (P00477) (417 aa)%3B Fasta score E(): 0%2C 53.5%25 identity in 415 aa overlap. Contains Pfam match to entry PF00464 SHMT%2C Serine hydroxymethyltransferase.;gbkey=CDS;gene=glyA;product=serine hydroxymethyltransferase;protein_id=CAC30908.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2340277	2341422	.	-	.	ID=id-glyA;Note=Pfam match to entry PF00464 SHMT%2C Serine hydroxymethyltransferase%2C score 753.60%2C E-value 5.4e-226;gbkey=misc_feature;gene=glyA
AL450380.1	EMBL	gene	2341563	2342501	.	+	.	ID=gene-coaA;Name=coaA;gbkey=Gene;gene=coaA;gene_biotype=protein_coding;gene_synonym=ML1954
AL450380.1	EMBL	CDS	2341563	2342501	.	+	0	ID=cds-CAC30909.1;Parent=gene-coaA;Dbxref=GOA:Q9X795,InterPro:IPR004566,InterPro:IPR006083,InterPro:IPR027417,NCBI_GP:CAC30909.1;Name=CAC30909.1;Note=Similar to M. tuberculosis pantothenate kinase coaA Rv1092c SW:COAA_MYCTU (O53440) (312 aa)%3B Fasta score E(): 0%2C 93.6%25 identity in 312 aa overlap%2C and to many others e.g. Escherichia coli pantothenate kinase SW:COAA_ECOLI (P15044) (316 aa)%3B Fasta score E(): 0%2C 53.1%25 identity in 311 aa overlap. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=coaA;product=pantothenate kinase;protein_id=CAC30909.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2341851	2341874	.	+	.	ID=id-coaA;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=coaA
AL450380.1	EMBL	repeat_region	2342518	2343336	.	-	.	ID=id-AL450380.1:2342518..2343336;Note=Dispersed repeat%2C RLEP%2C copy 33;gbkey=repeat_region
AL450380.1	EMBL	gene	2343329	2344078	.	-	.	ID=gene-truA;Name=truA;gbkey=Gene;gene=truA;gene_biotype=protein_coding;gene_synonym=ML1955
AL450380.1	EMBL	CDS	2343329	2344078	.	-	0	ID=cds-CAC30910.1;Parent=gene-truA;Dbxref=GOA:Q9X796,InterPro:IPR001406,InterPro:IPR020094,InterPro:IPR020095,InterPro:IPR020097,InterPro:IPR020103,NCBI_GP:CAC30910.1;Name=CAC30910.1;Note=Similar to M. tuberculosis probable pseudouridylate synthase truA Rv3455c SW:TRUA_MYCTU (Z95390) (256 aa)%3B Fasta score E(): 0%2C 77.2%25 identity in 246 aa overlap%2C and to many others e.g Pseudomonas aeruginosa tRNA pseudouridine synthase A SW:TRUA_PSEAE (O87016) (285 aa)%3B Fasta score E(): 4.2e-16%2C 34.3%25 identity in 242 aa overlap. Contains Pfam match to entry PF01416 PseudoU_synth_1%2C tRNA pseudouridine synthase.;gbkey=CDS;gene=truA;product=probable pseudouridylate synthase;protein_id=CAC30910.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2343452	2344090	.	-	.	ID=id-AL450380.1:2343452..2344090;Note=Pfam match to entry PF01416 PseudoU_synth_1%2C tRNA pseudouridine synthase%2C score 297.50%2C E-value 1.6e-85;gbkey=misc_feature
AL450380.1	EMBL	gene	2344170	2344682	.	-	.	ID=gene-rplQ;Name=rplQ;gbkey=Gene;gene=rplQ;gene_biotype=protein_coding;gene_synonym=ML1956
AL450380.1	EMBL	CDS	2344170	2344682	.	-	0	ID=cds-CAC30911.1;Parent=gene-rplQ;Dbxref=GOA:Q9X797,InterPro:IPR000456,NCBI_GP:CAC30911.1;Name=CAC30911.1;Note=Similar to M. tuberculosis 50S ribosomal protein L17 rplQ Rv3456c SW:RL17_MYCTU (O06323) (180 aa)%3B Fasta score E(): 0%2C 81.9%25 identity in 171 aa overlap. Contains Pfam match to entry PF01196 Ribosomal_L17%2C Ribosomal protein L17.;gbkey=CDS;gene=rplQ;product=50S ribosomal protein L17;protein_id=CAC30911.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2344335	2344625	.	-	.	ID=id-rplQ;Note=Pfam match to entry PF01196 Ribosomal_L17%2C Ribosomal protein L17%2C score 176.90%2C E-value 3.3e-49;gbkey=misc_feature;gene=rplQ
AL450380.1	EMBL	gene	2344706	2345749	.	-	.	ID=gene-rpoA;Name=rpoA;gbkey=Gene;gene=rpoA;gene_biotype=protein_coding;gene_synonym=ML1957
AL450380.1	EMBL	CDS	2344706	2345749	.	-	0	ID=cds-CAC30912.1;Parent=gene-rpoA;Dbxref=GOA:Q9X798,InterPro:IPR009025,InterPro:IPR011260,InterPro:IPR011262,InterPro:IPR011263,InterPro:IPR011773,NCBI_GP:CAC30912.1;Name=CAC30912.1;Note=Similar to M. tuberculosis [alpha] subunit of RNA polymerase rpoA Rv3457c SW:RPOA_MYCTU (O06324) (347 aa)%3B Fasta score E(): 0%2C 95.7%25 identity in 347 aa overlap. Contains Pfam match to entry PF01000 RNA_pol_A_bac%2C Bacterial RNA polymerase%2C alpha chain. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=rpoA;product=[alpha] subunit of RNA polymerase;protein_id=CAC30912.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2344844	2345746	.	-	.	ID=id-rpoA;Note=Pfam match to entry PF01000 RNA_pol_A_bac%2C Bacterial RNA polymerase%2C alpha chain%2C score 584.60%2C E-value 6.1e-172;gbkey=misc_feature;gene=rpoA
AL450380.1	EMBL	sequence_feature	2345108	2345131	.	-	.	ID=id-rpoA-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=rpoA
AL450380.1	EMBL	gene	2345834	2346439	.	-	.	ID=gene-rpsD;Name=rpsD;gbkey=Gene;gene=rpsD;gene_biotype=protein_coding;gene_synonym=ML1958
AL450380.1	EMBL	CDS	2345834	2346439	.	-	0	ID=cds-CAC30913.1;Parent=gene-rpsD;Dbxref=GOA:Q9X799,InterPro:IPR001912,InterPro:IPR002942,InterPro:IPR005709,InterPro:IPR018079,InterPro:IPR022801,NCBI_GP:CAC30913.1;Name=CAC30913.1;Note=Similar to M. tuberculosis 30S ribosomal protein S4 rpsD Rv3458c SW:RS4_MYCTU (O06325) (201 aa)%3B Fasta score E(): 0%2C 93.5%25 identity in 201 aa overlap. Contains Pfam match to entry PF00163 Ribosomal_S4%2C Ribosomal protein S4/S9 N-terminal domain. Contains Pfam match to entry PF01479 S4%2C S4 domain. Contains PS00632 Ribosomal protein S4 signature. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=rpsD;product=30S ribosomal protein S4;protein_id=CAC30913.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2346026	2346169	.	-	.	ID=id-rpsD;Note=Pfam match to entry PF01479 S4%2C S4 domain%2C score 82.80%2C E-value 7e-21;gbkey=misc_feature;gene=rpsD
AL450380.1	EMBL	sequence_feature	2346101	2346175	.	-	.	ID=id-rpsD-2;Note=PS00632 Ribosomal protein S4 signature;gbkey=misc_feature;gene=rpsD
AL450380.1	EMBL	sequence_feature	2346170	2346439	.	-	.	ID=id-rpsD-3;Note=Pfam match to entry PF00163 Ribosomal_S4%2C Ribosomal protein S4/S9 N-terminal domain%2C score 95.90%2C E-value 7.9e-25;gbkey=misc_feature;gene=rpsD
AL450380.1	EMBL	sequence_feature	2346197	2346220	.	-	.	ID=id-rpsD-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=rpsD
AL450380.1	EMBL	gene	2346473	2346889	.	-	.	ID=gene-rpsK;Name=rpsK;gbkey=Gene;gene=rpsK;gene_biotype=protein_coding;gene_synonym=ML1959
AL450380.1	EMBL	CDS	2346473	2346889	.	-	0	ID=cds-CAC30914.1;Parent=gene-rpsK;Dbxref=GOA:Q9X7A0,InterPro:IPR001971,InterPro:IPR018102,InterPro:IPR019981,NCBI_GP:CAC30914.1;Name=CAC30914.1;Note=Similar to M. tuberculosis 30S ribosomal protein S11 rpsK Rv3459c SW:RS11_MYCTU (O06326) (139 aa)%3B Fasta score E(): 0%2C 89.9%25 identity in 139 aa overlap. Contains Pfam match to entry PF00411 Ribosomal_S11%2C Ribosomal protein S11. Contains PS00054 Ribosomal protein S11 signature.;gbkey=CDS;gene=rpsK;product=30S ribosomal protein S11;protein_id=CAC30914.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2346479	2346808	.	-	.	ID=id-rpsK;Note=Pfam match to entry PF00411 Ribosomal_S11%2C Ribosomal protein S11%2C score 245.20%2C E-value 2.1e-75;gbkey=misc_feature;gene=rpsK
AL450380.1	EMBL	sequence_feature	2346506	2346574	.	-	.	ID=id-rpsK-2;Note=PS00054 Ribosomal protein S11 signature;gbkey=misc_feature;gene=rpsK
AL450380.1	EMBL	gene	2346893	2347267	.	-	.	ID=gene-rpsM;Name=rpsM;gbkey=Gene;gene=rpsM;gene_biotype=protein_coding;gene_synonym=ML1960
AL450380.1	EMBL	CDS	2346893	2347267	.	-	0	ID=cds-CAC30915.1;Parent=gene-rpsM;Dbxref=GOA:Q9X7A1,InterPro:IPR001892,InterPro:IPR010979,InterPro:IPR018269,InterPro:IPR019980,InterPro:IPR027437,NCBI_GP:CAC30915.1;Name=CAC30915.1;Note=Similar to M. tuberculosis 30S ribosomal protein S13 rpsM Rv3460c SW:RS13_MYCTU (O06327) (124 aa)%3B Fasta score E(): 0%2C 92.7%25 identity in 124 aa overlap. Contains Pfam match to entry PF00416 Ribosomal_S13%2C Ribosomal protein S13/S18. Contains PS00646 Ribosomal protein S13 signature.;gbkey=CDS;gene=rpsM;product=30S ribosomal protein S13;protein_id=CAC30915.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2346941	2347261	.	-	.	ID=id-rpsM;Note=Pfam match to entry PF00416 Ribosomal_S13%2C Ribosomal protein S13/S18%2C score 210.40%2C E-value 2.8e-59;gbkey=misc_feature;gene=rpsM
AL450380.1	EMBL	sequence_feature	2346965	2347006	.	-	.	ID=id-rpsM-2;Note=PS00646 Ribosomal protein S13 signature;gbkey=misc_feature;gene=rpsM
AL450380.1	EMBL	gene	2347444	2347557	.	-	.	ID=gene-rpmJ;Name=rpmJ;gbkey=Gene;gene=rpmJ;gene_biotype=protein_coding;gene_synonym=ML1961
AL450380.1	EMBL	CDS	2347444	2347557	.	-	0	ID=cds-CAC30916.1;Parent=gene-rpmJ;Dbxref=GOA:Q9X7A2,InterPro:IPR000473,NCBI_GP:CAC30916.1;Name=CAC30916.1;Note=Similar to M. tuberculosis 50S ribosomal protein L36 rpmJ Rv3461c SW:RL36_MYCTU (P45810) (37 aa)%3B Fasta score E(): 1e-15%2C 86.5%25 identity in 37 aa overlap. Contains PS00828 Ribosomal protein L36 signature.;gbkey=CDS;gene=rpmJ;product=50S ribosomal protein L36;protein_id=CAC30916.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2347450	2347527	.	-	.	ID=id-rpmJ;Note=PS00828 Ribosomal protein L36 signature;gbkey=misc_feature;gene=rpmJ
AL450380.1	EMBL	gene	2347597	2347818	.	-	.	ID=gene-infA;Name=infA;gbkey=Gene;gene=infA;gene_biotype=protein_coding;gene_synonym=ML1962
AL450380.1	EMBL	CDS	2347597	2347818	.	-	0	ID=cds-CAC30917.1;Parent=gene-infA;Dbxref=GOA:P0A5H7,InterPro:IPR004368,InterPro:IPR006196,InterPro:IPR012340,InterPro:IPR022967,NCBI_GP:CAC30917.1;Name=CAC30917.1;Note=Similar to M. tuberculosis initiation factor IF-1 infA Rv3462c SW:IF1_MYCTU (P45957) (72 aa)%3B Fasta score E(): 9.6e-30%2C 100.0%25 identity in 72 aa overlap. Contains Pfam match to entry PF00575 S1%2C S1 RNA binding domain.;gbkey=CDS;gene=infA;product=initiation factor IF-1;protein_id=CAC30917.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2347600	2347812	.	-	.	ID=id-infA;Note=Pfam match to entry PF00575 S1%2C S1 RNA binding domain%2C score 43.00%2C E-value 3e-10;gbkey=misc_feature;gene=infA
AL450380.1	EMBL	pseudogene	2348125	2348280	.	+	.	ID=gene-ML1963;Name=ML1963;gbkey=Gene;gene=ML1963;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2348125	2348280	.	+	0	ID=cds-ML1963;Parent=gene-ML1963;Note=Possible pseudogene of M. tuberculosis orthologue Rv3463 (Best blastx score 121);gbkey=CDS;gene=ML1963;product=probable neuraminidase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2348333	2349334	.	+	.	ID=gene-rmlB;Name=rmlB;gbkey=Gene;gene=rmlB;gene_biotype=protein_coding;gene_synonym=ML1964
AL450380.1	EMBL	CDS	2348333	2349334	.	+	0	ID=cds-CAC30919.1;Parent=gene-rmlB;Dbxref=GOA:Q9CBH7,InterPro:IPR001509,InterPro:IPR005888,InterPro:IPR016040,UniProtKB/TrEMBL:Q9CBH7,NCBI_GP:CAC30919.1;Name=CAC30919.1;Note=Similar to M. tuberculosis dTDP-glucose 4%2C6-dehydratase rmlB Rv3464 TR:O06329 (EMBL:Z95390) (331 aa)%3B Fasta score E(): 0%2C 84.0%25 identity in 331 aa overlap%2C and TR:Q50556 (EMBL:U43540) (329 aa)%3B Fasta score E(): 0%2C 78.2%25 identity in 331 aa overlap%2C and to others e.g. Streptococcus pneumoniae DTDP-glucose-4%2C6-dehydratase cpsN TR:O54611 (EMBL:AF030364) (349 aa)%3B Fasta score E(): 0%2C 59.9%25 identity in 334 aa overlap. Contains Pfam match to entry PF01370 Epimerase%2C NAD dependent epimerase/dehydratase family.%3B~Similar to ML0204%2C ML0751%2C ML1942 and ML2428;gbkey=CDS;gene=rmlB;product=dTDP-glucose 4%2C6-dehydratase;protein_id=CAC30919.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2348345	2349274	.	+	.	ID=id-rmlB;Note=Pfam match to entry PF01370 Epimerase%2C NAD dependent epimerase/dehydratase family%2C score 470.30%2C E-value 1.6e-137;gbkey=misc_feature;gene=rmlB
AL450380.1	EMBL	gene	2349336	2349944	.	+	.	ID=gene-rmlC;Name=rmlC;gbkey=Gene;gene=rmlC;gene_biotype=protein_coding;gene_synonym=ML1965
AL450380.1	EMBL	CDS	2349336	2349944	.	+	0	ID=cds-CAC30920.1;Parent=gene-rmlC;Dbxref=GOA:Q7AQ10,InterPro:IPR000888,InterPro:IPR011051,InterPro:IPR014710,UniProtKB/TrEMBL:Q7AQ10,NCBI_GP:CAC30920.1;Name=CAC30920.1;Note=Similar to M. tuberculosis dTDP-4-dehydrorhamnose 3%2C5-epimerase rmlC Rv3465 TR:O06330 (EMBL:Z95390) (202 aa)%3B Fasta score E(): 0%2C 75.4%25 identity in 199 aa overlap%2C and to many others e.g. Streptomyces griseus DTDP-4-dehydrorhamnose 3%2C5-epimerase SW:STRM_STRGR (P29783) (200 aa)%3B Fasta score E(): 0%2C 45.6%25 identity in 193 aa overlap. Contains Pfam match to entry PF00908 dTDP_sugar_isom%2C dTDP-4-dehydrorhamnose 3%2C5-epimerase.;gbkey=CDS;gene=rmlC;product=dTDP-4-dehydrorhamnose 3%2C5-epimerase;protein_id=CAC30920.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2349342	2349875	.	+	.	ID=id-rmlC;Note=Pfam match to entry PF00908 dTDP_sugar_isom%2C dTDP-4-dehydrorhamnose 3%2C5-epimerase%2C score 308.80%2C E-value 6.5e-89;gbkey=misc_feature;gene=rmlC
AL450380.1	EMBL	gene	2349989	2350474	.	+	.	ID=gene-lpqH;Name=lpqH;gbkey=Gene;gene=lpqH;gene_biotype=protein_coding;gene_synonym=ML1966
AL450380.1	EMBL	CDS	2349989	2350474	.	+	0	ID=cds-CAC30921.1;Parent=gene-lpqH;Dbxref=GOA:Q7AQ09,InterPro:IPR008691,UniProtKB/TrEMBL:Q7AQ09,NCBI_GP:CAC30921.1;Name=CAC30921.1;Note=Similar to M. tuberculosis 19 kDa lipoprotein antigen precursor lpqH Rv3763. Contains a possible N-terminal signal sequence and a PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=lpqH;product=possible lipoprotein;protein_id=CAC30921.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2350019	2350051	.	+	.	ID=id-lpqH;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=lpqH
AL450380.1	EMBL	pseudogene	2352618	2352845	.	-	.	ID=gene-ML1967;Name=ML1967;gbkey=Gene;gene=ML1967;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2352618	2352845	.	-	0	ID=cds-ML1967;Parent=gene-ML1967;Note=Possible pseudogene of M. tuberculosis paralog PPE;gbkey=CDS;gene=ML1967;product=PPE family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2353314	2353499	.	-	.	ID=gene-ML1968;Name=ML1968;gbkey=Gene;gene=ML1968;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2353314	2353499	.	-	0	ID=cds-ML1968;Parent=gene-ML1968;Note=Possible pseudogene of M. tuberculosis paralog PE;gbkey=CDS;gene=ML1968;product=PE family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2353511	2355893	.	-	.	ID=id-AL450380.1:2353511..2355893;Note=Dispersed repeat%2C LEPREP%2C copy 6;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2353698	2353796	.	-	.	ID=gene-ML1969;Name=ML1969;gbkey=Gene;gene=ML1969;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2353698	2353796	.	-	0	ID=cds-ML1969;Parent=gene-ML1969;Note=Similar to Agrobacterium tumefaciens transposase TR:Q44454 (EMBL:Z18270) (366 aa) fasta scores: E(): 0.0002%2C 51.5%25 id in 33 aa%2C and to Pseudomonas putida transposase tnpa1 TR:Q9R9U9 (EMBL:AJ245436) (355 aa) fasta scores: E(): 0.00088%2C 48.5%25 id in 33 aa;gbkey=CDS;gene=ML1969;pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2354061	2355204	.	-	.	ID=gene-ML1970;Name=ML1970;gbkey=Gene;gene=ML1970;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2354061	2355204	.	-	0	ID=cds-ML1970;Parent=gene-ML1970;Note=Similar to many e.g. Cryphonectria parasitica (Chesnut blight fungus) putative maturase TR:AAF27656 (EMBL:AF218567) (778 aa) fasta scores: E(): 7.8e-11%2C 29.2%25 id in 216 aa;gbkey=CDS;gene=ML1970;product=putative group II intron maturase-related protein;pseudo=true;transl_table=11
AL450380.1	EMBL	stem_loop	2354524	2354577	.	-	.	ID=id-ML1970;gbkey=stem_loop;gene=ML1970;pseudo=true
AL450380.1	EMBL	pseudogene	2355409	2355548	.	-	.	ID=gene-ML1971;Name=ML1971;gbkey=Gene;gene=ML1971;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2355409	2355548	.	-	0	ID=cds-ML1971;Parent=gene-ML1971;Note=Similar to Pseudomonas putida transposase tnpa1 TR:Q9R9U9 (EMBL:AJ245436) (355 aa) fasta scores: E(): 3.4e-05%2C 47.8%25 id in 46 aa%2C and to Agrobacterium tumefaciens transposase TR:Q44454 (EMBL:Z18270) (366 aa) fasta scores: E(): 0.00026%2C 41.3%25 id in 46 aa;gbkey=CDS;gene=ML1971;pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2355894	2356039	.	-	.	ID=id-AL450380.1:2355894..2356039;Note=146 bp sequence found at 5'-end of copies 6 and 7 of LEPREP;gbkey=repeat_region
AL450380.1	EMBL	gene	2356311	2356541	.	-	.	ID=gene-ML1972;Name=ML1972;gbkey=Gene;gene=ML1972;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2356311	2356541	.	-	0	ID=cds-CAC30927.1;Parent=gene-ML1972;Dbxref=UniProtKB/TrEMBL:Q9CBH6,NCBI_GP:CAC30927.1;Name=CAC30927.1;Note=unknown.;gbkey=CDS;gene=ML1972;product=hypothetical protein;protein_id=CAC30927.1;transl_table=11
AL450380.1	EMBL	pseudogene	2357577	2358380	.	+	.	ID=gene-ML1973;Name=ML1973;gbkey=Gene;gene=ML1973;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2357577	2358380	.	+	0	ID=cds-ML1973;Parent=gene-ML1973;Note=Possible pseudogene of M. tuberculosis paralog Rv0315 (Best blastx score 130);gbkey=CDS;gene=ML1973;product=glycosyl hydrolase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2358452	2360170	.	+	.	ID=gene-ML1974;Name=ML1974;gbkey=Gene;gene=ML1974;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2358452	2360170	.	+	0	ID=cds-CAC30929.1;Parent=gene-ML1974;Dbxref=GOA:Q9CBH5,InterPro:IPR002293,UniProtKB/TrEMBL:Q9CBH5,NCBI_GP:CAC30929.1;Name=CAC30929.1;Note=Similar to M. tuberculosis probable permease Rv1979c SW:YJ79_MYCTU (Q10875) (481 aa)%3B Fasta score E(): 0%2C 76.8%25 identity in 462 aa overlap%2C and to e.g. Arabidopsis thaliana putative amino acid transporter TR:Q9SQZ0 (EMBL:AC011560) (584 aa)%3B Fasta score E(): 2.1e-13%2C 23.0%25 identity in 508 aa overlap. Contains Pfam match to entry PF00324 aa_permeases%2C Amino acid permease. Contains PS00017 ATP/GTP-binding site motif A (P-loop).%3B~Similar to ML1304 and ML1305;gbkey=CDS;gene=ML1974;product=unknown permease;protein_id=CAC30929.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2358782	2360152	.	+	.	ID=id-ML1974;Note=Pfam match to entry PF00324 aa_permeases%2C Amino acid permease%2C score -176.40%2C E-value 4.2e-06;gbkey=misc_feature;gene=ML1974
AL450380.1	EMBL	sequence_feature	2359370	2359393	.	+	.	ID=id-ML1974-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML1974
AL450380.1	EMBL	pseudogene	2360792	2361049	.	+	.	ID=gene-ML1975;Name=ML1975;gbkey=Gene;gene=ML1975;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2360792	2361049	.	+	0	ID=cds-ML1975;Parent=gene-ML1975;gbkey=CDS;gene=ML1975;product=probable oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2361219	2361566	.	-	.	ID=gene-ML1976;Name=ML1976;gbkey=Gene;gene=ML1976;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2361219	2361566	.	-	0	ID=cds-CAC30931.1;Parent=gene-ML1976;Dbxref=UniProtKB/TrEMBL:Q9CBH4,NCBI_GP:CAC30931.1;Name=CAC30931.1;Note=unknown%3B questionable CDS.;gbkey=CDS;gene=ML1976;product=very hypothetical protein;protein_id=CAC30931.1;transl_table=11
AL450380.1	EMBL	pseudogene	2361834	2362411	.	+	.	ID=gene-ML1977;Name=ML1977;gbkey=Gene;gene=ML1977;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2361834	2362411	.	+	0	ID=cds-ML1977;Parent=gene-ML1977;Note=Possible pseudogene of M. tuberculosis orthologue Rv2025c (Best blastx score 209);gbkey=CDS;gene=ML1977;product=membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2362441	2363076	.	+	.	ID=gene-ephF;Name=ephF;gbkey=Gene;gene=ephF;gene_biotype=pseudogene;gene_synonym=ML1978;pseudo=true
AL450380.1	EMBL	CDS	2362441	2363076	.	+	0	ID=cds-ephF;Parent=gene-ephF;Note=Possible pseudogene of M. tuberculosis paralog ephF (Best blastx score 78);gbkey=CDS;gene=ephF;product=probable epoxide hydrolase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2363934	2364341	.	-	.	ID=gene-ML1979;Name=ML1979;gbkey=Gene;gene=ML1979;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2363934	2364341	.	-	0	ID=cds-CAC30934.1;Parent=gene-ML1979;Dbxref=UniProtKB/TrEMBL:Q9CBH3,NCBI_GP:CAC30934.1;Name=CAC30934.1;Note=unknonwn.;gbkey=CDS;gene=ML1979;product=hypothetical protein;protein_id=CAC30934.1;transl_table=11
AL450380.1	EMBL	pseudogene	2365099	2365895	.	-	.	ID=gene-fadD31;Name=fadD31;gbkey=Gene;gene=fadD31;gene_biotype=pseudogene;gene_synonym=ML1980;pseudo=true
AL450380.1	EMBL	CDS	2365099	2365895	.	-	0	ID=cds-fadD31;Parent=gene-fadD31;Note=Possible pseudogene of M. tuberculosis orthologue fadD31 (Best blastx score 214);gbkey=CDS;gene=fadD31;product=acyl-CoA synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2366091	2366460	.	+	.	ID=gene-ML1981;Name=ML1981;gbkey=Gene;gene=ML1981;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2366091	2366460	.	+	0	ID=cds-ML1981;Parent=gene-ML1981;Note=Possible pseudogene of M. tuberculosis orthologue Rv1924c (Best blastx score 169);gbkey=CDS;gene=ML1981;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2366597	2366905	.	+	.	ID=gene-ML1982;Name=ML1982;gbkey=Gene;gene=ML1982;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2366597	2366905	.	+	0	ID=cds-CAC30937.1;Parent=gene-ML1982;Dbxref=InterPro:IPR006160,UniProtKB/TrEMBL:Q9CBH2,NCBI_GP:CAC30937.1;Name=CAC30937.1;Note=Some similarity to transport proteins e.g. Escherichia coli short-chain fatty acids transporter SW:ATOE_ECOLI (P76460) (440 aa)%3B Fasta score E(): 0.064%2C 32.7%25 identity in 55 aa overlap.;gbkey=CDS;gene=ML1982;product=putative integral membrane protein;protein_id=CAC30937.1;transl_table=11
AL450380.1	EMBL	gene	2367418	2367885	.	+	.	ID=gene-ML1983;Name=ML1983;gbkey=Gene;gene=ML1983;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2367418	2367885	.	+	0	ID=cds-CAC30938.1;Parent=gene-ML1983;Dbxref=InterPro:IPR019587,InterPro:IPR023393,UniProtKB/TrEMBL:Q9CBH1,NCBI_GP:CAC30938.1;Name=CAC30938.1;Note=Similar to M. tuberculosis gene with weak similarity to pollen antigens Rv1919c TR:O53961 (EMBL:AL022020) (154 aa)%3B Fasta score E(): 0%2C 72.8%25 identity in 151 aa overlap.;gbkey=CDS;gene=ML1983;product=conserved hypothetical protein;protein_id=CAC30938.1;transl_table=11
AL450380.1	EMBL	pseudogene	2368107	2369135	.	-	.	ID=gene-ML1984;Name=ML1984;gbkey=Gene;gene=ML1984;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2368107	2369135	.	-	0	ID=cds-ML1984;Parent=gene-ML1984;Note=Possible pseudogene of M. tuberculosis paralog Rv3618 (Best blastx score 108);gbkey=CDS;gene=ML1984;product=possible oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2369802	2372198	.	-	.	ID=gene-aceA;Name=aceA;gbkey=Gene;gene=aceA;gene_biotype=protein_coding;gene_synonym=ML1985
AL450380.1	EMBL	CDS	2369802	2372198	.	-	0	ID=cds-CAC30940.1;Parent=gene-aceA;Dbxref=GOA:P46831,InterPro:IPR006254,InterPro:IPR015813,InterPro:IPR018523,NCBI_GP:CAC30940.1;Name=CAC30940.1;Note=Previously sequenced as Mycobacterium leprae isocitrate lyase SW:ACEA_MYCLE (P46831) (606 aa)%3B Fasta score E(): 0%2C 99.8%25 identity in 568 aa overlap. Similar to M. tuberculosis isocitrate lyase N-terminal and C-terminal modules aceAa Rv1915 TR:O07718 (EMBL:Z97193) (367 aa)%3B Fasta score E(): 0%2C 87.1%25 identity in 295 aa overlap and aceAb Rv1916 TR:O07717 (EMBL:Z97193) (398 aa)%3B Fasta score E(): 0%2C 87.9%25 identity in 397 aa overlap%2C and to many others e.g. Coprinus cinereus isocitrate lyase SW:ACEA_COPCI (O13439) (537 aa)%3B Fasta score E(): 0%2C 38.1%25 identity in 586 aa overlap. Contains 2 Pfam matches to entry PF00463 ICL%2C Isocitrate lyase. Contains PS00161 Isocitrate lyase signature.;gbkey=CDS;gene=aceA;product=isocitrate lyase;protein_id=CAC30940.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2370462	2370881	.	-	.	ID=id-aceA;Note=Pfam match to entry PF00463 ICL%2C Isocitrate lyase%2C score 171.30%2C E-value 1.8e-67;gbkey=misc_feature;gene=aceA
AL450380.1	EMBL	sequence_feature	2371269	2372042	.	-	.	ID=id-aceA-2;Note=Pfam match to entry PF00463 ICL%2C Isocitrate lyase%2C score 282.60%2C E-value 4.1e-111;gbkey=misc_feature;gene=aceA
AL450380.1	EMBL	sequence_feature	2371449	2371466	.	-	.	ID=id-aceA-3;Note=PS00161 Isocitrate lyase signature;gbkey=misc_feature;gene=aceA
AL450380.1	EMBL	pseudogene	2372740	2373191	.	-	.	ID=gene-ML1986;Name=ML1986;gbkey=Gene;gene=ML1986;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2372740	2373191	.	-	0	ID=cds-ML1986;Parent=gene-ML1986;Note=Possible pseudogene of M. tuberculosis paralog sigC (Best blastx score 104);gbkey=CDS;gene=ML1986;product=ECF subfamily sigma subunit (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2373427	2375727	.	+	.	ID=gene-ctpA;Name=ctpA;gbkey=Gene;gene=ctpA;gene_biotype=protein_coding;gene_synonym=ML1987
AL450380.1	EMBL	CDS	2373427	2375727	.	+	0	ID=cds-CAC30942.1;Parent=gene-ctpA;Dbxref=GOA:P46839,InterPro:IPR000579,InterPro:IPR001757,InterPro:IPR006121,InterPro:IPR008250,InterPro:IPR017969,InterPro:IPR018303,InterPro:IPR023214,InterPro:IPR023299,InterPro:IPR027256,NCBI_GP:CAC30942.1;Name=CAC30942.1;Note=Similar to Mycobacterium tuberculosis cation-transporting P-type ATPase A ctpA or Rv0092 or MTCY251.11 SW:CTPA_MYCTU (Q10876) (761 aa) fasta scores: E(): 0%2C 77.2%25 id in 715 aa. Previously sequenced as SW:CTPA_MYCLE (P46839). Contains multiple possible membrane spanning hydrophobic domains and Pfam match to entry PF00122 E1-E2_ATPase%2C E1-E2 ATPase. Contains PS00154 E1-E2 ATPases phosphorylation site.%3B~Similar to ML0747 and ML2000;gbkey=CDS;gene=ctpA;product=putative cation-transporting ATPase;protein_id=CAC30942.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2373979	2375547	.	+	.	ID=id-ctpA;Note=Pfam match to entry PF00122 E1-E2_ATPase%2C E1-E2 ATPase%2C score 763.50%2C E-value 8.9e-226;gbkey=misc_feature;gene=ctpA
AL450380.1	EMBL	sequence_feature	2374672	2374692	.	+	.	ID=id-ctpA-2;Note=PS00154 E1-E2 ATPases phosphorylation site;gbkey=misc_feature;gene=ctpA
AL450380.1	EMBL	gene	2375705	2376418	.	-	.	ID=gene-ML1988;Name=ML1988;gbkey=Gene;gene=ML1988;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2375705	2376418	.	-	0	ID=cds-CAC30943.1;Parent=gene-ML1988;Dbxref=InterPro:IPR027383,UniProtKB/TrEMBL:Q9CBG8,NCBI_GP:CAC30943.1;Name=CAC30943.1;Note=Similar to M. tuberculosis probable integral membrane protein Rv0093c SW:Y093_MYCTU (Q10890) E():0 70.3%25 id in 236 aa. Contains possible membrane spanning hydrophobic domains. Note lacks the N-terminal 46 aa of the M. tuberculosis protein.;gbkey=CDS;gene=ML1988;product=probable integral membrane protein;protein_id=CAC30943.1;transl_table=11
AL450380.1	EMBL	gene	2376735	2377085	.	-	.	ID=gene-ML1989;Name=ML1989;gbkey=Gene;gene=ML1989;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2376735	2377085	.	-	0	ID=cds-CAC30944.1;Parent=gene-ML1989;Dbxref=UniProtKB/TrEMBL:Q9CBG7,NCBI_GP:CAC30944.1;Name=CAC30944.1;Note=unknown.;gbkey=CDS;gene=ML1989;product=hypothetical protein;protein_id=CAC30944.1;transl_table=11
AL450380.1	EMBL	gene	2377165	2377407	.	-	.	ID=gene-ML1990;Name=ML1990;gbkey=Gene;gene=ML1990;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2377165	2377407	.	-	0	ID=cds-CAC30945.1;Parent=gene-ML1990;Dbxref=UniProtKB/TrEMBL:Q9CBG6,NCBI_GP:CAC30945.1;Name=CAC30945.1;Note=no database matches. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1990;product=putative integral membrane protein;protein_id=CAC30945.1;transl_table=11
AL450380.1	EMBL	gene	2378494	2379900	.	+	.	ID=gene-PPE-10;Name=PPE;gbkey=Gene;gene=PPE;gene_biotype=protein_coding;gene_synonym=ML1991
AL450380.1	EMBL	CDS	2378494	2379900	.	+	0	ID=cds-CAC30946.1;Parent=gene-PPE-10;Dbxref=InterPro:IPR000030,UniProtKB/TrEMBL:Q9CBG5,NCBI_GP:CAC30946.1;Name=CAC30946.1;Note=Similar to M. tuberculosis PPE-family protein Rv0096 SW:Y096_MYCTU (Q10892) (463 aa)%3B Fasta score E(): 0%2C 58.6%25 identity in 466 aa overlap. Contains Pfam match to entry PF00823 PPE%2C PPE family.%3B~Similar to ML1828 and ML0539;gbkey=CDS;gene=PPE;product=PPE-family protein;protein_id=CAC30946.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2378497	2378973	.	+	.	ID=id-PPE-3;Note=Pfam match to entry PF00823 PPE%2C PPE family%2C score 309.10%2C E-value 5.4e-89;gbkey=misc_feature;gene=PPE
AL450380.1	EMBL	gene	2380049	2380918	.	+	.	ID=gene-ML1992;Name=ML1992;gbkey=Gene;gene=ML1992;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2380049	2380918	.	+	0	ID=cds-CAC30947.1;Parent=gene-ML1992;Dbxref=GOA:Q9CBG4,InterPro:IPR003819,UniProtKB/TrEMBL:Q9CBG4,NCBI_GP:CAC30947.1;Name=CAC30947.1;Note=Similar to M. tuberculosis hypothetical protein Rv0097 SW:Y097_MYCTU (Q10893) (289 aa)%3B Fasta score E(): 0%2C 76.4%25 identity in 288 aa overlap%2C and to Escherichia coli alpha-ketoglutarate-dependent taurine dioxygenase SW:TAUD_ECOLI (P37610) (282 aa)%3B Fasta score E(): 2.6e-10%2C 24.5%25 identity in 278 aa overlap.;gbkey=CDS;gene=ML1992;product=putative oxidoreductase;protein_id=CAC30947.1;transl_table=11
AL450380.1	EMBL	gene	2380915	2381466	.	+	.	ID=gene-ML1993;Name=ML1993;gbkey=Gene;gene=ML1993;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2380915	2381466	.	+	0	ID=cds-CAC30948.1;Parent=gene-ML1993;Dbxref=InterPro:IPR022598,UniProtKB/TrEMBL:Q9CBG3,NCBI_GP:CAC30948.1;Name=CAC30948.1;Note=Similar to M. tuberculosis hypothetiacl protein RV0098 SW:Y098_MYCTU (Q10894) (183 aa)%3B Fasta score E(): 0%2C 65.6%25 identity in 180 aa overlap.;gbkey=CDS;gene=ML1993;product=conserved hypothetical protein;protein_id=CAC30948.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	2381476	2381480	.	+	.	ID=id-AL450380.1:2381476..2381480;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	2381496	2383094	.	+	.	ID=gene-fadD10;Name=fadD10;gbkey=Gene;gene=fadD10;gene_biotype=protein_coding;gene_synonym=ML1994
AL450380.1	EMBL	CDS	2381496	2383094	.	+	0	ID=cds-CAC30949.1;Parent=gene-fadD10;Dbxref=GOA:Q7AQ08,InterPro:IPR000873,InterPro:IPR020845,InterPro:IPR025110,UniProtKB/TrEMBL:Q7AQ08,NCBI_GP:CAC30949.1;Name=CAC30949.1;Note=Similar to Mycobacterium tuberculosis putative acyl-CoA synthases e.g. Rv0099 or MTCY251.18 TR:Q10878 (EMBL:Z74410) (540 aa) fasta scores: E(): 0%2C 74.6%25 id in 531 aa. Previously sequenced as TR:Q50176 (EMBL:Z46257). Contains Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme. Contains PS00455 Putative AMP-binding domain signature.;gbkey=CDS;gene=fadD10;product=acyl-CoA synthase;protein_id=CAC30949.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2381601	2382836	.	+	.	ID=id-fadD10;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score 41.30%2C E-value 1e-17;gbkey=misc_feature;gene=fadD10
AL450380.1	EMBL	sequence_feature	2381991	2382026	.	+	.	ID=id-fadD10-2;Note=PS00455 Putative AMP-binding domain signature;gbkey=misc_feature;gene=fadD10
AL450380.1	EMBL	gene	2383087	2383323	.	+	.	ID=gene-ML1995;Name=ML1995;gbkey=Gene;gene=ML1995;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2383087	2383323	.	+	0	ID=cds-CAC30950.1;Parent=gene-ML1995;Dbxref=InterPro:IPR009081,UniProtKB/TrEMBL:Q9CBG2,NCBI_GP:CAC30950.1;Name=CAC30950.1;Note=Similar to M. tuberculosis hypothetical protein Rv0100 SW:Y100_MYCTU (Q10895) (78 aa)%3B Fasta score E(): 1.1e-18%2C 69.0%25 identity in 71 aa overlap. Contains Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site.;gbkey=CDS;gene=ML1995;product=conserved hypothetical protein;protein_id=CAC30950.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2383105	2383233	.	+	.	ID=id-ML1995;Note=Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site%2C score 25.60%2C E-value 1.9e-05;gbkey=misc_feature;gene=ML1995
AL450380.1	EMBL	gene	2383320	2387525	.	+	.	ID=gene-nrp;Name=nrp;gbkey=Gene;gene=nrp;gene_biotype=protein_coding;gene_synonym=ML1996
AL450380.1	EMBL	CDS	2383320	2387525	.	+	0	ID=cds-CAC30951.1;Parent=gene-nrp;Dbxref=GOA:Q7AQ07,InterPro:IPR000873,InterPro:IPR010080,InterPro:IPR013120,InterPro:IPR016040,InterPro:IPR020845,UniProtKB/TrEMBL:Q7AQ07,NCBI_GP:CAC30951.1;Name=CAC30951.1;Note=Similar in N-terminus to M. tuberculosis probable peptide synthetase nrp Rv0101 TR:Q10896 (EMBL:Z74410) (2512 aa)%3B Fasta score E(): 0%2C 65.7%25 identity in 1089 aa overlap%2C and to e.g. Streptomyces sp streptothricin peptide synthase TR:O33743 (EMBL:Y10293) (481 aa)%3B Fasta score E(): 5.6e-20%2C 31.2%25 identity in 382 aa overlap. Contains Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme. Contains PS00455 Putative AMP-binding domain signature. Contains PS00017 ATP/GTP-binding site motif A (P-loop).%3B~Similar to ML1051 and ML0243;gbkey=CDS;gene=nrp;product=probable peptide synthase;protein_id=CAC30951.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2383413	2383436	.	+	.	ID=id-nrp;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=nrp
AL450380.1	EMBL	sequence_feature	2384772	2385941	.	+	.	ID=id-nrp-2;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score 14.50%2C E-value 3.2e-16;gbkey=misc_feature;gene=nrp
AL450380.1	EMBL	sequence_feature	2385108	2385143	.	+	.	ID=id-nrp-3;Note=PS00455 Putative AMP-binding domain signature;gbkey=misc_feature;gene=nrp
AL450380.1	EMBL	gene	2387532	2388164	.	-	.	ID=gene-ML1997;Name=ML1997;gbkey=Gene;gene=ML1997;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2387532	2388164	.	-	0	ID=cds-CAC30952.1;Parent=gene-ML1997;Dbxref=UniProtKB/TrEMBL:Q9CBG1,NCBI_GP:CAC30952.1;Name=CAC30952.1;Note=Similar to M. tuberculosis probable integral membrane protein Rv0970 SW:Y970_MYCTU (P71541) (210 aa)%3B Fasta score E(): 0%2C 52.1%25 identity in 213 aa overlap%2C and to Streptomyces coelicolor putative integral membrane protein SCM2.15C. Contains multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1997;product=probable integral membrane protein;protein_id=CAC30952.1;transl_table=11
AL450380.1	EMBL	gene	2388277	2390256	.	+	.	ID=gene-ML1998;Name=ML1998;gbkey=Gene;gene=ML1998;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2388277	2390256	.	+	0	ID=cds-CAC30953.1;Parent=gene-ML1998;Dbxref=GOA:P53525,InterPro:IPR008457,InterPro:IPR019108,NCBI_GP:CAC30953.1;Name=CAC30953.1;Note=Similar to M. tuberculosis membrane protein Rv0102 SW:Y102_MYCTU (Q10897) (661 aa)%3B Fasta score E(): 0%2C 70.2%25 identity in 662 aa overlap. Contains multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML1998;product=possible membrane protein;protein_id=CAC30953.1;transl_table=11
AL450380.1	EMBL	pseudogene	2390664	2390918	.	-	.	ID=gene-ML1999;Name=ML1999;gbkey=Gene;gene=ML1999;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2390664	2390918	.	-	0	ID=cds-ML1999;Parent=gene-ML1999;gbkey=CDS;gene=ML1999;product=putative carboxyvinyl-carboxyphosphonate phosphorylmutase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2391317	2393569	.	-	.	ID=gene-ctpB;Name=ctpB;gbkey=Gene;gene=ctpB;gene_biotype=protein_coding;gene_synonym=ML2000
AL450380.1	EMBL	CDS	2391317	2393569	.	-	0	ID=cds-CAC30955.1;Parent=gene-ctpB;Dbxref=GOA:P46840,InterPro:IPR000579,InterPro:IPR001757,InterPro:IPR006121,InterPro:IPR008250,InterPro:IPR017969,InterPro:IPR018303,InterPro:IPR023214,InterPro:IPR023299,InterPro:IPR027256,NCBI_GP:CAC30955.1;Name=CAC30955.1;Note=Similar to M. tuberculosis cation-transporting ATPase ctpB SW:CTPB_MYCTU (Q10877) (752 aa)%3B Fasta score E(): 0%2C 77.0%25 identity in 752 aa overlap%2C and to many others e.g. Bacillus subtilis potential copper-transporting ATPase YVGX SW:ATCU_BACSU (O32220) (803 aa)%3B Fasta score E(): 0%2C 39.8%25 identity in 744 aa overlap. Contains Pfam matches to entries PF00403 HMA%2C Heavy-metal-associated domain and PF00122 E1-E2_ATPase%2C E1-E2 ATPase. Also contains Prosite hits to PS00013 Prokaryotic membrane lipoprotein lipid attachment site%2C PS00154 E1-E2 ATPases phosphorylation site%2C PS01047 Heavy-metal-associated domain and PS01229 Hypothetical cof family signature 2. Contains multiple possible membrane spanning hydrophobic domains.%3B~Similar to ML1987%2C ML0747 and ML2671;gbkey=CDS;gene=ctpB;product=cation-transporting ATPase;protein_id=CAC30955.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2391359	2392930	.	-	.	ID=id-ctpB;Note=Pfam match to entry PF00122 E1-E2_ATPase%2C E1-E2 ATPase%2C score 778.90%2C E-value 2e-230;gbkey=misc_feature;gene=ctpB
AL450380.1	EMBL	sequence_feature	2391590	2391658	.	-	.	ID=id-ctpB-2;Note=PS01229 Hypothetical cof family signature 2;gbkey=misc_feature;gene=ctpB
AL450380.1	EMBL	sequence_feature	2392217	2392237	.	-	.	ID=id-ctpB-3;Note=PS00154 E1-E2 ATPases phosphorylation site;gbkey=misc_feature;gene=ctpB
AL450380.1	EMBL	sequence_feature	2392367	2392399	.	-	.	ID=id-ctpB-4;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=ctpB
AL450380.1	EMBL	sequence_feature	2393327	2393515	.	-	.	ID=id-ctpB-5;Note=Pfam match to entry PF00403 HMA%2C Heavy-metal-associated domain%2C score 86.40%2C E-value 3.1e-23;gbkey=misc_feature;gene=ctpB
AL450380.1	EMBL	sequence_feature	2393417	2393503	.	-	.	ID=id-ctpB-6;Note=PS01047 Heavy-metal-associated domain;gbkey=misc_feature;gene=ctpB
AL450380.1	EMBL	pseudogene	2393656	2394278	.	-	.	ID=gene-ML2001;Name=ML2001;gbkey=Gene;gene=ML2001;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2393656	2394278	.	-	0	ID=cds-ML2001;Parent=gene-ML2001;Note=Possible pseudogene of M. tuberculosis orthologue Rv1913 (Best blastx score 204);gbkey=CDS;gene=ML2001;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2395004	2395785	.	+	.	ID=gene-fadB5;Name=fadB5;gbkey=Gene;gene=fadB5;gene_biotype=pseudogene;gene_synonym=ML2002;pseudo=true
AL450380.1	EMBL	CDS	2395004	2395785	.	+	0	ID=cds-fadB5;Parent=gene-fadB5;Note=Possible pseudogene of M. tuberculosis orthologue fadB5 (Best blastx score 327);gbkey=CDS;gene=fadB5;product=3-hydroxyacyl-CoA dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2395786	2396186	.	-	.	ID=gene-ML2003;Name=ML2003;gbkey=Gene;gene=ML2003;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2395786	2396186	.	-	0	ID=cds-ML2003;Parent=gene-ML2003;Note=Possible pseudogene of M. tuberculosis paralog Rv3829c (Best blastx score 121);gbkey=CDS;gene=ML2003;product=probable ketoacyl reductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2396408	2396665	.	+	.	ID=gene-ML2004;Name=ML2004;gbkey=Gene;gene=ML2004;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2396408	2396665	.	+	0	ID=cds-ML2004;Parent=gene-ML2004;Note=Possible pseudogene of M. tuberculosis paralog Rv2715;gbkey=CDS;gene=ML2004;product=putative hydrolase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2396762	2397458	.	+	.	ID=gene-ML2005;Name=ML2005;gbkey=Gene;gene=ML2005;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2396762	2397458	.	+	0	ID=cds-ML2005;Parent=gene-ML2005;Note=Possible pseudogene of M. tuberculosis paralog Rv0021c (Best blastx score 197);gbkey=CDS;gene=ML2005;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2398929	2399327	.	+	.	ID=gene-ML2006;Name=ML2006;gbkey=Gene;gene=ML2006;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2398929	2399327	.	+	0	ID=cds-ML2006;Parent=gene-ML2006;Note=Possible pseudogene of M. tuberculosis paralog Rv3368c (Best blastx score 130);gbkey=CDS;gene=ML2006;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2399858	2400340	.	+	.	ID=gene-ML2007;Name=ML2007;gbkey=Gene;gene=ML2007;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2399858	2400340	.	+	0	ID=cds-ML2007;Parent=gene-ML2007;Note=Possible pseudogene of M. tuberculosis orthologue Rv1907c (Best blastx score 281);gbkey=CDS;gene=ML2007;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2400375	2400832	.	+	.	ID=gene-furA;Name=furA;gbkey=Gene;gene=furA;gene_biotype=pseudogene;gene_synonym=ML2008;pseudo=true
AL450380.1	EMBL	CDS	2400375	2400832	.	+	0	ID=cds-furA;Parent=gene-furA;Note=Possible pseudogene of M. tuberculosis orthologue furA (Best blastx score 118);gbkey=CDS;gene=furA;product=ferric uptake regulatory protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2400867	2402885	.	+	.	ID=gene-katG;Name=katG;gbkey=Gene;gene=katG;gene_biotype=pseudogene;gene_synonym=ML2009;pseudo=true
AL450380.1	EMBL	CDS	2400867	2402885	.	+	0	ID=cds-katG;Parent=gene-katG;Note=Possible pseudogene of M. tuberculosis orthologue katG (Best blastx score 391);gbkey=CDS;gene=katG;product=catalase-peroxidase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2402973	2403434	.	+	.	ID=gene-ML2010;Name=ML2010;gbkey=Gene;gene=ML2010;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2402973	2403434	.	+	0	ID=cds-CAC30965.1;Parent=gene-ML2010;Dbxref=UniProtKB/TrEMBL:Q7AQ06,NCBI_GP:CAC30965.1;Name=CAC30965.1;Note=Similar to M. tuberculosis hypothetical protein Rv1906c TR:O07726 (EMBL:Z97193) (156 aa)%3B Fasta score E(): 2.6e-31%2C 63.2%25 identity in 155 aa overlap. Contains a possible N-terminal signal sequence and a PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=ML2010;product=putative lipoprotein;protein_id=CAC30965.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2403006	2403038	.	+	.	ID=id-ML2010;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=ML2010
AL450380.1	EMBL	gene	2403489	2404451	.	+	.	ID=gene-aao;Name=aao;gbkey=Gene;gene=aao;gene_biotype=protein_coding;gene_synonym=ML2011
AL450380.1	EMBL	CDS	2403489	2404451	.	+	0	ID=cds-CAC30966.1;Parent=gene-aao;Dbxref=GOA:Q7AQ05,InterPro:IPR006076,InterPro:IPR016040,InterPro:IPR023209,UniProtKB/TrEMBL:Q7AQ05,NCBI_GP:CAC30966.1;Name=CAC30966.1;Note=Similar to M. tuberculosis putative D-amino acid oxidase aao Rv1905c TR:O07727 (EMBL:Z97193) (320 aa)%3B Fasta score E(): 0%2C 71.4%25 identity in 318 aa overlap%2C and to many others e.g. Bos taurus D-aspartate oxidase SW:OXDD_BOVIN (X95310) (341 aa)%3B Fasta score E(): 7e-24%2C 30.2%25 identity in 328 aa overlap. Contains Pfam match to entry PF01266 DAO%2C D-amino acid oxidase.;gbkey=CDS;gene=aao;product=D-amino acid oxidase;protein_id=CAC30966.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2403504	2404448	.	+	.	ID=id-aao;Note=Pfam match to entry PF01266 DAO%2C D-amino acid oxidase%2C score 524.00%2C E-value 1.1e-153;gbkey=misc_feature;gene=aao
AL450380.1	EMBL	gene	2404469	2404888	.	-	.	ID=gene-ML2012;Name=ML2012;gbkey=Gene;gene=ML2012;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2404469	2404888	.	-	0	ID=cds-CAC30967.1;Parent=gene-ML2012;Dbxref=InterPro:IPR007165,UniProtKB/TrEMBL:Q7AQ04,NCBI_GP:CAC30967.1;Name=CAC30967.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv1903 or MTCY180.15C TR:O07729 (EMBL:Z97193) (134 aa) fasta scores: E(): 0%2C 80.6%25 id in 129 aa and to Streptomyces coelicolor putative membrane proteins e.g. SCQ11.05C TR:Q9S1M9 (EMBL:AL096823) (125 aa) fasta scores: E(): 2.5e-15%2C 43.0%25 id in 121 aa. Previously sequenced as TR:O33146 (EMBL:AJ000521). Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML2012;product=putative membrane protein;protein_id=CAC30967.1;transl_table=11
AL450380.1	EMBL	gene	2405356	2405736	.	-	.	ID=gene-ML2013;Name=ML2013;gbkey=Gene;gene=ML2013;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2405356	2405736	.	-	0	ID=cds-CAC30968.1;Parent=gene-ML2013;Dbxref=GOA:Q7AQ03,InterPro:IPR006992,UniProtKB/TrEMBL:Q7AQ03,NCBI_GP:CAC30968.1;Name=CAC30968.1;Note=no database matches.;gbkey=CDS;gene=ML2013;product=hypothetical protein;protein_id=CAC30968.1;transl_table=11
AL450380.1	EMBL	pseudogene	2406042	2407280	.	+	.	ID=gene-nanT;Name=nanT;gbkey=Gene;gene=nanT;gene_biotype=pseudogene;gene_synonym=ML2014;pseudo=true
AL450380.1	EMBL	CDS	2406042	2407280	.	+	0	ID=cds-nanT;Parent=gene-nanT;Note=Possible pseudogene of M. tuberculosis orthologue nanT (Best blastx score 578);gbkey=CDS;gene=nanT;product=probable sialic acid transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2407300	2408598	.	-	.	ID=gene-cinA;Name=cinA;gbkey=Gene;gene=cinA;gene_biotype=protein_coding;gene_synonym=ML2015
AL450380.1	EMBL	CDS	2407300	2408598	.	-	0	ID=cds-CAC30970.1;Parent=gene-cinA;Dbxref=GOA:Q9X7D6,InterPro:IPR001453,InterPro:IPR008135,InterPro:IPR008136,NCBI_GP:CAC30970.1;Name=CAC30970.1;Note=Similar to M. tuberculosis competence damage protein homolog cinA Rv1901 TR:O07731 (EMBL:Z97193) (430 aa)%3B Fasta score E(): 0%2C 77.0%25 identity in 431 aa overlap%2C and to e.g. Streptococcus pneumoniae putative competence-damage protein SW:CINA_STRPN (P54184) (418 aa)%3B Fasta score E(): 1.4e-22%2C 31.0%25 identity in 439 aa overlap.;gbkey=CDS;gene=cinA;product=competence damage protein homolog;protein_id=CAC30970.1;transl_table=11
AL450380.1	EMBL	pseudogene	2408628	2409815	.	+	.	ID=gene-lipJ;Name=lipJ;gbkey=Gene;gene=lipJ;gene_biotype=pseudogene;gene_synonym=ML2016;pseudo=true
AL450380.1	EMBL	CDS	2408628	2409815	.	+	0	ID=cds-lipJ;Parent=gene-lipJ;Note=Possible pseudogene of M. tuberculosis orthologue lipJ (Best blastx score 394);gbkey=CDS;gene=lipJ;product=probable esterase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2409794	2409946	.	+	.	ID=id-AL450380.1:2409794..2409946;Note=153 bp repeat%2C 95%25 identical to region 208823..208975;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2410025	2410495	.	+	.	ID=gene-lppD;Name=lppD;gbkey=Gene;gene=lppD;gene_biotype=pseudogene;gene_synonym=ML2017;pseudo=true
AL450380.1	EMBL	CDS	2410025	2410495	.	+	0	ID=cds-lppD;Parent=gene-lppD;Note=Possible pseudogene of M. tuberculosis orthologue lppD (Best blastx score 230);gbkey=CDS;gene=lppD;product=lipoprotein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2410544	2410697	.	-	.	ID=gene-ML2018;Name=ML2018;gbkey=Gene;gene=ML2018;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2410544	2410697	.	-	0	ID=cds-ML2018;Parent=gene-ML2018;Note=Possible pseudogene of M. tuberculosis orthologue Rv1898 (Best blastx score 80);gbkey=CDS;gene=ML2018;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2410783	2411202	.	+	.	ID=gene-ML2019;Name=ML2019;gbkey=Gene;gene=ML2019;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2410783	2411202	.	+	0	ID=cds-ML2019;Parent=gene-ML2019;Note=Possible pseudogene of M. tuberculosis orthologue Rv1897c (Best blastx score 256);gbkey=CDS;gene=ML2019;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2411315	2412229	.	+	.	ID=gene-ML2020;Name=ML2020;gbkey=Gene;gene=ML2020;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2411315	2412229	.	+	0	ID=cds-CAC30975.1;Parent=gene-ML2020;Dbxref=GOA:Q9CBG0,InterPro:IPR007213,InterPro:IPR011610,InterPro:IPR029063,NCBI_GP:CAC30975.1;Name=CAC30975.1;Note=Similar to M. tuberculosis conserved hypothetical protein Rv1896c TR:O07736 (EMBL:Z97193) (303 aa)%3B Fasta score E(): 0%2C 78.0%25 identity in 300 aa overlap%2C and to many other M. tuberculosis hypothetical proteins e.g. Rv3399 SW:YX99_MYCTU (Z77165) (348 aa)%3B Fasta score E(): 0%2C 41.4%25 identity in 304 aa overlap.%3B~Similar to ML2640 and ML2539;gbkey=CDS;gene=ML2020;product=conserved hypothetical protein;protein_id=CAC30975.1;transl_table=11
AL450380.1	EMBL	pseudogene	2412517	2413585	.	+	.	ID=gene-ML2021;Name=ML2021;gbkey=Gene;gene=ML2021;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2412517	2413585	.	+	0	ID=cds-ML2021;Parent=gene-ML2021;Note=Possible pseudogene of M. tuberculosis orthologue Rv1894c (Best blastx score 252);gbkey=CDS;gene=ML2021;product=some similarity to dioxygenases (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2413644	2414168	.	-	.	ID=gene-ML2022;Name=ML2022;gbkey=Gene;gene=ML2022;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2413644	2414168	.	-	0	ID=cds-CAC30977.1;Parent=gene-ML2022;Dbxref=UniProtKB/TrEMBL:Q9CBF9,NCBI_GP:CAC30977.1;Name=CAC30977.1;Note=Similar to M. tuberculosis hypothetical protein Rv1893 TR:O07739 (EMBL:Z97193) (72 aa)%3B Fasta score E(): 3e-13%2C 69.4%25 identity in 72 aa overlap.;gbkey=CDS;gene=ML2022;product=conserved hypothetical protein;protein_id=CAC30977.1;transl_table=11
AL450380.1	EMBL	gene	2414264	2414668	.	-	.	ID=gene-ML2023;Name=ML2023;gbkey=Gene;gene=ML2023;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2414264	2414668	.	-	0	ID=cds-CAC30978.1;Parent=gene-ML2023;Dbxref=UniProtKB/TrEMBL:Q7AQ02,NCBI_GP:CAC30978.1;Name=CAC30978.1;Note=Similar to M. tuberculosis hypothetical protein Rv1891 TR:O07741 (EMBL:Z97193) (135 aa)%3B Fasta score E(): 0%2C 79.7%25 identity in 133 aa overlap. Contains probable N-terminal signal sequence.;gbkey=CDS;gene=ML2023;product=putative secreted protein;protein_id=CAC30978.1;transl_table=11
AL450380.1	EMBL	pseudogene	2415021	2416227	.	+	.	ID=gene-ML2024;Name=ML2024;gbkey=Gene;gene=ML2024;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2415021	2416227	.	+	0	ID=cds-ML2024;Parent=gene-ML2024;Note=Possible pseudogene of M. tuberculosis paralog Rv3545c (Best blastx score 411);gbkey=CDS;gene=ML2024;product=cytochrome p450 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2416469	2416759	.	+	.	ID=gene-ML2025;Name=ML2025;gbkey=Gene;gene=ML2025;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2416469	2416759	.	+	0	ID=cds-ML2025;Parent=gene-ML2025;Note=Similar to part of e.g. Emericella nidulans alcohol dehydrogenase II SW:ADH2_EMENI (P54202) fasta scores: E(): 0.00049%2C 31.1%25 in 74 aa;gbkey=CDS;gene=ML2025;product=alcohol dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2417261	2417765	.	+	.	ID=gene-ML2026;Name=ML2026;gbkey=Gene;gene=ML2026;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2417261	2417765	.	+	0	ID=cds-ML2026;Parent=gene-ML2026;Note=Possible pseudogene of M. tuberculosis orthologue Rv1890c (Best blastx score 232);gbkey=CDS;gene=ML2026;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2417822	2418435	.	-	.	ID=gene-ML2027;Name=ML2027;gbkey=Gene;gene=ML2027;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2417822	2418435	.	-	0	ID=cds-ML2027;Parent=gene-ML2027;Note=Possible pseudogene of M. tuberculosis orthologue Rv1887 (Best blastx score 238);gbkey=CDS;gene=ML2027;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2418620	2419603	.	+	.	ID=gene-fbpB;Name=fbpB;gbkey=Gene;gene=fbpB;gene_biotype=protein_coding;gene_synonym=ML2028
AL450380.1	EMBL	CDS	2418620	2419603	.	+	0	ID=cds-CAC30983.1;Parent=gene-fbpB;Dbxref=GOA:P31951,InterPro:IPR000801,InterPro:IPR029058,NCBI_GP:CAC30983.1;Name=CAC30983.1;Note=Similar to Mycobacterium kansasii antigen 85-B precursor SW:A85B_MYCKA (P21160) fasta scores: E(): 0%2C 85.8%25 in 324 aa%2C and to Mycobacterium avium antigen 85-B precursor SW:A85B_MYCAV (Q06947) fasta scores: E(): 0%2C 81.2%25 in 329 aa. Contains Pfam match to entry PF00756 Esterase%2C Putative esterase.%3B~Similar to ML0097%2C ML2655 and ML0098;gbkey=CDS;gene=fbpB;product=antigen 85A%2C mycolyltransferase;protein_id=CAC30983.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2418698	2419354	.	+	.	ID=id-fbpB;Note=Pfam match to entry PF00756 Esterase%2C Putative esterase%2C score 375.10%2C E-value 7.4e-109;gbkey=misc_feature;gene=fbpB
AL450380.1	EMBL	pseudogene	2419997	2420547	.	+	.	ID=gene-ML2029;Name=ML2029;gbkey=Gene;gene=ML2029;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2419997	2420547	.	+	0	ID=cds-ML2029;Parent=gene-ML2029;Note=Possible pseudogene of M. tuberculosis orthologue Rv1885c (Best blastx score 180);gbkey=CDS;gene=ML2029;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2420647	2421120	.	+	.	ID=gene-ML2030;Name=ML2030;gbkey=Gene;gene=ML2030;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2420647	2421120	.	+	0	ID=cds-CAC30985.1;Parent=gene-ML2030;Dbxref=InterPro:IPR010618,InterPro:IPR023346,UniProtKB/TrEMBL:Q9CBF8,NCBI_GP:CAC30985.1;Name=CAC30985.1;Note=Similar to Mycobacterium tuberculosis hypothetical proteins: TR:O07747 (EMBL:Z97193) fasta scores: E(): 0%2C 70.2%25 in 141 aa and TR:P71755 (EMBL:Z81368) fasta scores: E(): 2.8e-20%2C 47.9%25 in 121 aa.%3B~Similar to ML2151 and ML0240;gbkey=CDS;gene=ML2030;product=conserved hypothetical protein;protein_id=CAC30985.1;transl_table=11
AL450380.1	EMBL	gene	2421151	2421606	.	+	.	ID=gene-ML2031;Name=ML2031;gbkey=Gene;gene=ML2031;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2421151	2421606	.	+	0	ID=cds-CAC30986.1;Parent=gene-ML2031;Dbxref=InterPro:IPR005031,InterPro:IPR023393,UniProtKB/TrEMBL:Q9CBF7,NCBI_GP:CAC30986.1;Name=CAC30986.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein TR:O07748 (EMBL:Z97193) fasta scores: E(): 0%2C 76.2%25 in 151 aa%2C and to Streptomyces actuosus NSH-OrfB TR:P72384 (EMBL:U75434) fasta scores: E(): 2.5e-08%2C 34.4%25 in 125 aa.;gbkey=CDS;gene=ML2031;product=conserved hypothetical protein;protein_id=CAC30986.1;transl_table=11
AL450380.1	EMBL	pseudogene	2421754	2422159	.	+	.	ID=gene-lppE;Name=lppE;gbkey=Gene;gene=lppE;gene_biotype=pseudogene;gene_synonym=ML2032;pseudo=true
AL450380.1	EMBL	CDS	2421754	2422159	.	+	0	ID=cds-lppE;Parent=gene-lppE;Note=Possible pseudogene of M. tuberculosis orthologue lppE (Best blastx score 135);gbkey=CDS;gene=lppE;product=lipoprotein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2422755	2424059	.	+	.	ID=gene-ML2033;Name=ML2033;gbkey=Gene;gene=ML2033;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2422755	2424059	.	+	0	ID=cds-ML2033;Parent=gene-ML2033;Note=Possible pseudogene of M. tuberculosis orthologue Rv1880c (Best blastx score 323);gbkey=CDS;gene=ML2033;product=Similar to 6-deoxyerythronolide beta hydroxylase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2424795	2425045	.	+	.	ID=gene-ML2034;Name=ML2034;gbkey=Gene;gene=ML2034;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2424795	2425045	.	+	0	ID=cds-ML2034;Parent=gene-ML2034;Note=Possible pseudogene of M. tuberculosis paralog Rv2675c (Best blastx score 77);gbkey=CDS;gene=ML2034;product=putative methyltransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2425166	2425429	.	-	.	ID=gene-ML2035;Name=ML2035;gbkey=Gene;gene=ML2035;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2425166	2425429	.	-	0	ID=cds-CAC30990.1;Parent=gene-ML2035;Dbxref=UniProtKB/TrEMBL:Q9CBF6,NCBI_GP:CAC30990.1;Name=CAC30990.1;Note=no database matches.;gbkey=CDS;gene=ML2035;product=hypothetical protein;protein_id=CAC30990.1;transl_table=11
AL450380.1	EMBL	pseudogene	2426738	2427744	.	-	.	ID=gene-ML2036;Name=ML2036;gbkey=Gene;gene=ML2036;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2426738	2427744	.	-	0	ID=cds-ML2036;Parent=gene-ML2036;Note=Possible pseudogene of M. tuberculosis orthologue Rv1879 (Best blastx score 279);gbkey=CDS;gene=ML2036;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2427957	2428256	.	-	.	ID=gene-glnA3;Name=glnA3;gbkey=Gene;gene=glnA3;gene_biotype=pseudogene;gene_synonym=ML2037;pseudo=true
AL450380.1	EMBL	CDS	2427957	2428256	.	-	0	ID=cds-glnA3;Parent=gene-glnA3;Note=Possible pseudogene of M. tuberculosis orthologue glnA3 (Best blastx score 129);gbkey=CDS;gene=glnA3;product=probable glutamine synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2429323	2429802	.	-	.	ID=gene-bfrA;Name=bfrA;gbkey=Gene;gene=bfrA;gene_biotype=protein_coding;gene_synonym=ML2038
AL450380.1	EMBL	CDS	2429323	2429802	.	-	0	ID=cds-CAC30993.1;Parent=gene-bfrA;Dbxref=GOA:P43315,InterPro:IPR002024,InterPro:IPR008331,InterPro:IPR009040,InterPro:IPR009078,InterPro:IPR012347,NCBI_GP:CAC30993.1;Name=CAC30993.1;Note=Similar to Mycobacterium tuberculosis bacterioferritin SW:BFR_MYCTU (O08465) fasta scores: E(): 0%2C 90.1%25 in 152 aa%2C and to Brucella melitensis bacterioferritin SW:BFR_BRUME (P49944) fasta scores: E(): 8.5e-23%2C 44.6%25 in 139 aa. Contains Pfam match to entry PF01334 Bacteriofer%2C Bacterioferritin.;gbkey=CDS;gene=bfrA;product=bacterioferritin;protein_id=CAC30993.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2429341	2429781	.	-	.	ID=id-bfrA;Note=Pfam match to entry PF01334 Bacteriofer%2C Bacterioferritin%2C score 305.50%2C E-value 6.3e-88;gbkey=misc_feature;gene=bfrA
AL450380.1	EMBL	pseudogene	2430738	2431192	.	-	.	ID=gene-ML2039;Name=ML2039;gbkey=Gene;gene=ML2039;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2430738	2431192	.	-	0	ID=cds-ML2039;Parent=gene-ML2039;Note=Possible pseudogene of M. tuberculosis orthologue Rv1875 (Best blastx score 120);gbkey=CDS;gene=ML2039;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2431230	2431872	.	-	.	ID=gene-ML2040;Name=ML2040;gbkey=Gene;gene=ML2040;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2431230	2431872	.	-	0	ID=cds-ML2040;Parent=gene-ML2040;Note=Possible pseudogene of M. tuberculosis orthologue Rv1874 (Best blastx score 169);gbkey=CDS;gene=ML2040;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2431984	2432919	.	-	.	ID=gene-oxyR;Name=oxyR;gbkey=Gene;gene=oxyR;gene_biotype=protein_coding;gene_synonym=ML2041
AL450380.1	EMBL	CDS	2431984	2432919	.	-	0	ID=cds-CAC30996.1;Parent=gene-oxyR;Dbxref=GOA:P52678,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,NCBI_GP:CAC30996.1;Name=CAC30996.1;Note=Identical to Mycobacterium leprae probable hydrogen peroxide-inducible gene activator SW:OXYR_MYCLE (P52678) fasta scores: E(): 0%2C 100.0%25 in 311 aa and to Escherichia coli SW:OXYR_ECOLI (P11721%3B P22471) fasta scores: E(): 8.1e-33%2C 37.5%25 in 288 aa. Contains a probable helix-turn-helix motif at aa 23-44 (Score 1404%2C SD +3.97) Contains Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family. Contains PS00044 Bacterial regulatory proteins.%3B~Similar to and ML2663;gbkey=CDS;gene=oxyR;product=probable LysR-family transcriptional regulator;protein_id=CAC30996.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2432464	2432892	.	-	.	ID=id-oxyR;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 152.30%2C E-value 8.2e-42;gbkey=misc_feature;gene=oxyR
AL450380.1	EMBL	sequence_feature	2432758	2432850	.	-	.	ID=id-oxyR-2;Note=PS00044 Bacterial regulatory proteins;gbkey=misc_feature;gene=oxyR
AL450380.1	EMBL	gene	2433029	2433616	.	+	.	ID=gene-ahpC;Name=ahpC;gbkey=Gene;gene=ahpC;gene_biotype=protein_coding;gene_synonym=ML2042
AL450380.1	EMBL	CDS	2433029	2433616	.	+	0	ID=cds-CAC30997.1;Parent=gene-ahpC;Dbxref=GOA:Q9CBF5,InterPro:IPR000866,InterPro:IPR012336,InterPro:IPR024706,UniProtKB/TrEMBL:Q9CBF5,NCBI_GP:CAC30997.1;Name=CAC30997.1;Note=Similar to Mycobacterium avium alkyl hydroperoxidase C TR:Q57413 (EMBL:U18263) fasta scores: E(): 0%2C 86.2%25 in 195 aa%2C and to Streptomyces viridosporus alkyl hydroperoxide reductase TR:Q9X5V0 (EMBL:AF127576) fasta scores: E(): 0%2C 58.7%25 in 189 aa. Contains Pfam match to entry PF00578 AhpC-TSA%2C AhpC/TSA family.;gbkey=CDS;gene=ahpC;product=alkyl hydroperoxide reductase;protein_id=CAC30997.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2433044	2433517	.	+	.	ID=id-ahpC;Note=Pfam match to entry PF00578 AhpC-TSA%2C AhpC/TSA family%2C score 166.10%2C E-value 6.1e-46;gbkey=misc_feature;gene=ahpC
AL450380.1	EMBL	pseudogene	2433656	2434130	.	+	.	ID=gene-ahpD;Name=ahpD;gbkey=Gene;gene=ahpD;gene_biotype=pseudogene;gene_synonym=ML2043;pseudo=true
AL450380.1	EMBL	CDS	2433656	2434130	.	+	0	ID=cds-ahpD;Parent=gene-ahpD;Note=Possible pseudogene of M. tuberculosis orthologue ahpD (Best blastx score 150);gbkey=CDS;gene=ahpD;product=member of AhpC/TSA family (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2434368	2434589	.	-	.	ID=gene-ML2044;Name=ML2044;gbkey=Gene;gene=ML2044;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2434368	2434589	.	-	0	ID=cds-CAC30999.1;Parent=gene-ML2044;Dbxref=UniProtKB/TrEMBL:Q9CBF4,NCBI_GP:CAC30999.1;Name=CAC30999.1;Note=no database matches.;gbkey=CDS;gene=ML2044;product=hypothetical protein;protein_id=CAC30999.1;transl_table=11
AL450380.1	EMBL	gene	2434998	2435255	.	+	.	ID=gene-ML2045;Name=ML2045;gbkey=Gene;gene=ML2045;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2434998	2435255	.	+	0	ID=cds-CAC31000.1;Parent=gene-ML2045;Dbxref=GOA:Q9CBF3,InterPro:IPR006047,InterPro:IPR013781,InterPro:IPR017853,UniProtKB/TrEMBL:Q9CBF3,NCBI_GP:CAC31000.1;Name=CAC31000.1;Note=no database matches.;gbkey=CDS;gene=ML2045;product=hypothetical protein;protein_id=CAC31000.1;transl_table=11
AL450380.1	EMBL	gene	2435559	2436803	.	+	.	ID=gene-lldD2;Name=lldD2;gbkey=Gene;gene=lldD2;gene_biotype=protein_coding;gene_synonym=ML2046
AL450380.1	EMBL	CDS	2435559	2436803	.	+	0	ID=cds-CAC31001.1;Parent=gene-lldD2;Dbxref=GOA:Q9CBF2,InterPro:IPR000262,InterPro:IPR008259,InterPro:IPR012133,InterPro:IPR013785,UniProtKB/TrEMBL:Q9CBF2,NCBI_GP:CAC31001.1;Name=CAC31001.1;Note=Similar to Mycobacterium tuberculosis LLDD2 TR:P95143 (EMBL:AQ102036) fasta scores: E(): 0%2C 85.0%25 in 413 aa%2C and to Escherichia coli L-lactate dehydrogenase SW:LLDD_ECOLI (P33232) fasta scores: E(): 0%2C 37.3%25 in 383 aa. Contains Pfam match to entry PF01070 FMN_dh%2C FMN-dependent dehydrogenase. Contains PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site.;gbkey=CDS;gene=lldD2;product=L-lactate dehydrogenase;protein_id=CAC31001.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2435688	2436767	.	+	.	ID=id-lldD2;Note=Pfam match to entry PF01070 FMN_dh%2C FMN-dependent dehydrogenase%2C score 448.10%2C E-value 7.6e-131;gbkey=misc_feature;gene=lldD2
AL450380.1	EMBL	sequence_feature	2436453	2436473	.	+	.	ID=id-lldD2-2;Note=PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site;gbkey=misc_feature;gene=lldD2
AL450380.1	EMBL	pseudogene	2437206	2437523	.	+	.	ID=gene-ML2047;Name=ML2047;gbkey=Gene;gene=ML2047;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2437206	2437523	.	+	0	ID=cds-ML2047;Parent=gene-ML2047;Note=Possible pseudogene of M. tuberculosis paralog Rv1991c (Best blastx score 129);gbkey=CDS;gene=ML2047;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2437805	2438062	.	+	.	ID=gene-ML2048;Name=ML2048;gbkey=Gene;gene=ML2048;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2437805	2438062	.	+	0	ID=cds-CAC31003.1;Parent=gene-ML2048;Dbxref=GOA:Q7AQ01,InterPro:IPR004378,UniProtKB/TrEMBL:Q7AQ01,NCBI_GP:CAC31003.1;Name=CAC31003.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein TR:P95144 (EMBL:AL204060) fasta scores: E(): 4.7e-16%2C 62.0%25 in 79 aa%2C and to Streptomyces coelicolor hypothetical protein TR:CAB88434 (EMBL:AL353815) fasta scores: E(): 0.0092%2C 39.3%25 in 61 aa%3B truncated at C-terminus%3B may represent a pseudogene.;gbkey=CDS;gene=ML2048;product=conserved hypothetical protein;protein_id=CAC31003.1;transl_table=11
AL450380.1	EMBL	pseudogene	2438454	2439056	.	+	.	ID=gene-ML2049;Name=ML2049;gbkey=Gene;gene=ML2049;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2438454	2439056	.	+	0	ID=cds-ML2049;Parent=gene-ML2049;Note=Possible pseudogene of M. tuberculosis orthologue Rv1870c (Best blastx score 365);gbkey=CDS;gene=ML2049;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2439160	2440108	.	+	.	ID=gene-ML2050;Name=ML2050;gbkey=Gene;gene=ML2050;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2439160	2440108	.	+	0	ID=cds-ML2050;Parent=gene-ML2050;Note=Possible pseudogene of M. tuberculosis orthologue Rv1869c (Best blastx score 450);gbkey=CDS;gene=ML2050;product=probable reductase (like rhodocoxin reductase) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2440109	2440444	.	+	.	ID=gene-ML2051;Name=ML2051;gbkey=Gene;gene=ML2051;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2440109	2440444	.	+	0	ID=cds-ML2051;Parent=gene-ML2051;Note=Possible pseudogene of M. tuberculosis orthologue Rv1864c;gbkey=CDS;gene=ML2051;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2440420	2441088	.	+	.	ID=gene-ML2052;Name=ML2052;gbkey=Gene;gene=ML2052;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2440420	2441088	.	+	0	ID=cds-ML2052;Parent=gene-ML2052;Note=Possible pseudogene of M. tuberculosis orthologue Rv1863c (Best blastx score 190);gbkey=CDS;gene=ML2052;product=probable membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2441097	2442104	.	-	.	ID=gene-ML2053;Name=ML2053;gbkey=Gene;gene=ML2053;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2441097	2442104	.	-	0	ID=cds-CAC31008.1;Parent=gene-ML2053;Dbxref=GOA:Q9CBF1,InterPro:IPR002085,InterPro:IPR002328,InterPro:IPR011032,InterPro:IPR013149,InterPro:IPR013154,InterPro:IPR014187,InterPro:IPR016040,UniProtKB/TrEMBL:Q9CBF1,NCBI_GP:CAC31008.1;Name=CAC31008.1;Note=Similar to Mycobacterium tuberculosis adhA or Rv1862 or MTCY359.11 TR:P95153 (EMBL:Z83859) (346 aa) fasta scores: E(): 0%2C 84.5%25 id in 336 aa. Similar to Rhizobium meliloti alcohol dehydrogenase adhA SW:ADHA_RHIME (O31186) (340 aa) fasta scores: E(): 6.3e-26%2C 33.1%25 id in 344 aa and many putative alcohol dehydrogenases. Contains Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases. Contains PS00059 Zinc-containing alcohol dehydrogenases signature.%3B~Similar to ML1730%2C ML1784 and ML2025;gbkey=CDS;gene=ML2053;product=putative alcohol dehydrogenase;protein_id=CAC31008.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2441103	2442086	.	-	.	ID=id-ML2053;Note=Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases%2C score 184.40%2C E-value 1.8e-51;gbkey=misc_feature;gene=ML2053
AL450380.1	EMBL	sequence_feature	2441874	2441918	.	-	.	ID=id-ML2053-2;Note=PS00059 Zinc-containing alcohol dehydrogenases signature;gbkey=misc_feature;gene=ML2053
AL450380.1	EMBL	gene	2442182	2442481	.	-	.	ID=gene-ML2054;Name=ML2054;gbkey=Gene;gene=ML2054;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2442182	2442481	.	-	0	ID=cds-CAC31009.1;Parent=gene-ML2054;Dbxref=GOA:Q9CBF0,InterPro:IPR007341,UniProtKB/TrEMBL:Q9CBF0,NCBI_GP:CAC31009.1;Name=CAC31009.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein TR:P95154 (EMBL:Z83859) fasta scores: E(): 6.4e-18%2C 58.4%25 in 101 aa%2C and to Escherichia coli transglycosylase associated protein SW:TAG1_ECOLI (P76011) fasta scores: E(): 0.0054%2C 35.1%25 in 77 aa.;gbkey=CDS;gene=ML2054;product=integral membrane protein;protein_id=CAC31009.1;transl_table=11
AL450380.1	EMBL	gene	2442641	2443504	.	-	.	ID=gene-modD;Name=modD;gbkey=Gene;gene=modD;gene_biotype=protein_coding;gene_synonym=ML2055
AL450380.1	EMBL	CDS	2442641	2443504	.	-	0	ID=cds-CAC31010.1;Parent=gene-modD;Dbxref=GOA:P46842,InterPro:IPR010801,NCBI_GP:CAC31010.1;Name=CAC31010.1;Note=Previously sequenced Mycobacterium leprae Fap-l fibronectin attachment protein important in virulence for the efficient invasion of epithelial and Schwann cells%2C TR:Q9R5V6 fasta scores: E(): 0%2C 100.0%25 in 287 aa. The product of this CDS has also been shown to be highly immunogenic%2C Mycobacterium leprae molybdate uptake protein SW:MODD_MYCLE (P46842) fasta scores: E(): 0%2C 99.3%25 in 287 aa%2C and highly similar to several proteins involved in the uptake of molybdenum in other mycobacteria e.g. Mycobacterium tuberculosis molybdate uptake secreted protein precursor SW:MODD_MYCTU (Q50906%3B O08062) fasta scores: E(): 0%2C 66.8%25 in 298 aa. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=modD;product=probable cell surface protein (associated with virulence);protein_id=CAC31010.1;transl_table=11
AL450380.1	EMBL	pseudogene	2443623	2444715	.	-	.	ID=gene-modC;Name=modC;gbkey=Gene;gene=modC;gene_biotype=pseudogene;gene_synonym=ML2056;pseudo=true
AL450380.1	EMBL	CDS	2443623	2444715	.	-	0	ID=cds-modC;Parent=gene-modC;Note=Possible pseudogene of M. tuberculosis orthologue modC (Best blastx score 272);gbkey=CDS;gene=modC;product=molybdate uptake ABC-transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2444724	2445516	.	-	.	ID=gene-modB;Name=modB;gbkey=Gene;gene=modB;gene_biotype=pseudogene;gene_synonym=ML2057;pseudo=true
AL450380.1	EMBL	CDS	2444724	2445516	.	-	0	ID=cds-modB;Parent=gene-modB;Note=Possible pseudogene of M. tuberculosis orthologue modB (Best blastx score 427);gbkey=CDS;gene=modB;product=transport system permease%2C molybdate uptake (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2445546	2446318	.	-	.	ID=gene-modA;Name=modA;gbkey=Gene;gene=modA;gene_biotype=pseudogene;gene_synonym=ML2058;pseudo=true
AL450380.1	EMBL	CDS	2445546	2446318	.	-	0	ID=cds-modA;Parent=gene-modA;Note=Possible pseudogene of M. tuberculosis orthologue modA (Best blastx score 260);gbkey=CDS;gene=modA;product=molybdate binding protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2446556	2447230	.	+	.	ID=gene-ML2059;Name=ML2059;gbkey=Gene;gene=ML2059;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2446556	2447230	.	+	0	ID=cds-CAC31014.1;Parent=gene-ML2059;Dbxref=InterPro:IPR016040,UniProtKB/TrEMBL:Q7AQ00,NCBI_GP:CAC31014.1;Name=CAC31014.1;Note=Similar to Mycobacterium tuberculosis hypothetical 23.2 kda protein TR:P95158 (EMBL:Z83859) fasta scores: E(): 0%2C 80.5%25 in 220 aa%2C and to Streptomyces argillaceus ketoreductase TR:O86486 (EMBL:AJ007932) fasta scores: E(): 0.00044%2C 24.9%25 in 201 aa. Contains Pfam match to entry PF00678 adh_short_C2%2C Short chain dehydrogenase/reductase C-terminus.;gbkey=CDS;gene=ML2059;product=short-chain dehydrogenase/reductase family;protein_id=CAC31014.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2447126	2447203	.	+	.	ID=id-ML2059;Note=Pfam match to entry PF00678 adh_short_C2%2C Short chain dehydrogenase/reductase C-terminus%2C score 21.30%2C E-value 0.00028;gbkey=misc_feature;gene=ML2059
AL450380.1	EMBL	pseudogene	2447298	2448245	.	+	.	ID=gene-ML2060;Name=ML2060;gbkey=Gene;gene=ML2060;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2447298	2448245	.	+	0	ID=cds-ML2060;Parent=gene-ML2060;Note=Possible pseudogene of M. tuberculosis orthologue Rv1855c (Best blastx score 359);gbkey=CDS;gene=ML2060;product=probable monooxygenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2448422	2449822	.	+	.	ID=gene-ML2061;Name=ML2061;gbkey=Gene;gene=ML2061;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2448422	2449822	.	+	0	ID=cds-CAC31016.1;Parent=gene-ML2061;Dbxref=GOA:Q7APZ9,InterPro:IPR001327,InterPro:IPR013027,InterPro:IPR023753,UniProtKB/TrEMBL:Q7APZ9,NCBI_GP:CAC31016.1;Name=CAC31016.1;Note=Similar to Mycobacterium tuberculosis hypothetical 49.6 kda protein TR:P95160 (EMBL:Z83859) fasta scores: E(): 0%2C 90.2%25 in 460 aa%2C and to Corynebacterium glutamicum NADH dehydrogenase TR:Q9X710 (EMBL:AJ238250) fasta scores: E(): 0%2C 56.5%25 in 455 aa. Contains Pfam match to entry PF00070 pyr_redox%2C Pyridine nucleotide-disulphide oxidoreductase.;gbkey=CDS;gene=ML2061;product=possible dehydrogenase;protein_id=CAC31016.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2448470	2449390	.	+	.	ID=id-ML2061;Note=Pfam match to entry PF00070 pyr_redox%2C Pyridine nucleotide-disulphide oxidoreductase%2C score 125.70%2C E-value 2.3e-36;gbkey=misc_feature;gene=ML2061
AL450380.1	EMBL	pseudogene	2450038	2450269	.	-	.	ID=gene-ML2062;Name=ML2062;gbkey=Gene;gene=ML2062;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2450038	2450269	.	-	0	ID=cds-ML2062;Parent=gene-ML2062;Note=Possible pseudogene of M. tuberculosis orthologue Rv1847 (Best blastx score 84);gbkey=CDS;gene=ML2062;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2450656	2451084	.	+	.	ID=gene-ML2063;Name=ML2063;gbkey=Gene;gene=ML2063;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2450656	2451084	.	+	0	ID=cds-CAC31018.1;Parent=gene-ML2063;Dbxref=GOA:Q7APZ8,InterPro:IPR005650,InterPro:IPR011991,UniProtKB/TrEMBL:Q7APZ8,NCBI_GP:CAC31018.1;Name=CAC31018.1;Note=Similar to Mycobacterium tuberculosis hypothetical 15.2 kda protein TR:P95163 (EMBL:AL008609) fasta scores: E(): 0%2C 95.1%25 in 123 aa%2C and weakly to Bacillus licheniformis penicillinase repressor SW:BLAI_BACLI (P06555%3B P12286) fasta scores: E(): 1.1%2C 21.7%25 in 129 aa.;gbkey=CDS;gene=ML2063;product=possible regulator;protein_id=CAC31018.1;transl_table=11
AL450380.1	EMBL	gene	2451089	2452039	.	+	.	ID=gene-ML2064;Name=ML2064;gbkey=Gene;gene=ML2064;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2451089	2452039	.	+	0	ID=cds-CAC31019.1;Parent=gene-ML2064;Dbxref=GOA:Q7APZ7,InterPro:IPR001915,UniProtKB/TrEMBL:Q7APZ7,NCBI_GP:CAC31019.1;Name=CAC31019.1;Note=Similar to Mycobacterium tuberculosis hypothetical 32.7 kda protein TR:P95164 (EMBL:Z83859) fasta scores: E(): 0%2C 87.6%25 in 314 aa%2C and to Streptomyces coelicolor putative integral membrane protein SC10A7.04 TR:Q9XAS1 (EMBL:AL078618) fasta scores: E(): 1.8e-19%2C 32.6%25 in 328 aa.;gbkey=CDS;gene=ML2064;product=integral membrane protein;protein_id=CAC31019.1;transl_table=11
AL450380.1	EMBL	gene	2452179	2453630	.	+	.	ID=gene-gnd;Name=gnd;gbkey=Gene;gene=gnd;gene_biotype=protein_coding;gene_synonym=ML2065
AL450380.1	EMBL	CDS	2452179	2453630	.	+	0	ID=cds-CAC31020.1;Parent=gene-gnd;Dbxref=GOA:Q9CBE9,InterPro:IPR006113,InterPro:IPR006114,InterPro:IPR006115,InterPro:IPR006184,InterPro:IPR008927,InterPro:IPR012284,InterPro:IPR013328,InterPro:IPR016040,UniProtKB/TrEMBL:Q9CBE9,NCBI_GP:CAC31020.1;Name=CAC31020.1;Note=Similar to Mycobacterium tuberculosis cosmid gnd TR:P95165 (EMBL:AL008609) fasta scores: E(): 0%2C 86.8%25 in 485 aa and to Bacillus subtilis 6-phosphogluconate dehydrogenase%2C decarboxylating II SW:6PG2_BACSU (P80859%3B P54546) fasta scores: E(): 0%2C 55.7%25 in 465 aa. Contains Pfam match to entry PF00393 6PGD%2C 6-phosphogluconate dehydrogenases.;gbkey=CDS;gene=gnd;product=6-phosphogluconate dehydrogenase;protein_id=CAC31020.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2452233	2453567	.	+	.	ID=id-gnd;Note=Pfam match to entry PF00393 6PGD%2C 6-phosphogluconate dehydrogenases%2C score 815.70%2C E-value 1.7e-241;gbkey=misc_feature;gene=gnd
AL450380.1	EMBL	gene	2453700	2455136	.	+	.	ID=gene-guaB1;Name=guaB1;gbkey=Gene;gene=guaB1;gene_biotype=protein_coding;gene_synonym=ML2066
AL450380.1	EMBL	CDS	2453700	2455136	.	+	0	ID=cds-CAC31021.1;Parent=gene-guaB1;Dbxref=GOA:O32912,InterPro:IPR000644,InterPro:IPR001093,InterPro:IPR005990,InterPro:IPR005991,InterPro:IPR013785,NCBI_GP:CAC31021.1;Name=CAC31021.1;Note=Previously sequenced as TR:O32912 (EMBL:AL008609) fasta scores: E(): 0%2C 100.0%25 in 478 aa. Similar to Mycobacterium tuberculosis inosine-5'-monophosphate dehydrogenase rv1843c SW:YI43_MYCTU (Q50591) fasta scores: E(): 0%2C 86.4%25 in 478 aa%2C and to Bacillus subtilis inosine-5'-monophosphate dehydrogenase SW:IMDH_BACSU (P21879) fasta scores: E(): 0%2C 37.7%25 in 472 aa. Contains 2 Pfam matches to entry PF00571 CBS%2C CBS domain. Contains Pfam match to entry PF00478 IMPDH_C%2C IMP dehydrogenase / GMP reductase C terminus. Contains Pfam match to entry PF01574 IMPDH_N%2C IMP dehydrogenase / GMP reductase N terminus.%3B~Similar to ML0387 and ML0388;gbkey=CDS;gene=guaB1;product=inosine-5'-monophosphate dehydrogenase;protein_id=CAC31021.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2453700	2453975	.	+	.	ID=id-guaB1;Note=Pfam match to entry PF01574 IMPDH_N%2C IMP dehydrogenase / GMP reductase N terminus%2C score 34.30%2C E-value 2.6e-07;gbkey=misc_feature;gene=guaB1
AL450380.1	EMBL	sequence_feature	2453976	2454134	.	+	.	ID=id-guaB1-2;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 24.00%2C E-value 0.0034;gbkey=misc_feature;gene=guaB1
AL450380.1	EMBL	sequence_feature	2454150	2454311	.	+	.	ID=id-guaB1-3;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 33.10%2C E-value 6.5e-06;gbkey=misc_feature;gene=guaB1
AL450380.1	EMBL	sequence_feature	2454396	2455073	.	+	.	ID=id-guaB1-4;Note=Pfam match to entry PF00478 IMPDH_C%2C IMP dehydrogenase / GMP reductase C terminus%2C score 231.30%2C E-value 1.4e-65;gbkey=misc_feature;gene=guaB1
AL450380.1	EMBL	pseudogene	2455391	2456693	.	+	.	ID=gene-ML2067;Name=ML2067;gbkey=Gene;gene=ML2067;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2455391	2456693	.	+	0	ID=cds-ML2067;Parent=gene-ML2067;Note=Possible pseudogene of M. tuberculosis orthologue Rv1842c (Best blastx score 692);gbkey=CDS;gene=ML2067;product=possible membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2456693	2457640	.	+	.	ID=gene-ML2068;Name=ML2068;gbkey=Gene;gene=ML2068;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2456693	2457640	.	+	0	ID=cds-ML2068;Parent=gene-ML2068;Note=Possible pseudogene of M. tuberculosis orthologue Rv1841c;gbkey=CDS;gene=ML2068;product=possible membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2457996	2460191	.	+	.	ID=gene-glcB;Name=glcB;gbkey=Gene;gene=glcB;gene_biotype=protein_coding;gene_synonym=ML2069
AL450380.1	EMBL	CDS	2457996	2460191	.	+	0	ID=cds-CAC31024.1;Parent=gene-glcB;Dbxref=GOA:O32913,InterPro:IPR001465,InterPro:IPR006253,InterPro:IPR011076,InterPro:IPR023310,NCBI_GP:CAC31024.1;Name=CAC31024.1;Note=Similar to Mycobacterium tuberculosis probable malate synthase g SW:MASZ_MYCTU (Q50596) fasta scores: E(): 0%2C 82.4%25 in 729 aa%2C and to Escherichia coli malate synthase g SW:MASZ_ECOLI () fasta scores: E(): 0%2C 56.9%25 in 731 aa.;gbkey=CDS;gene=glcB;product=malate synthase;protein_id=CAC31024.1;transl_table=11
AL450380.1	EMBL	gene	2460317	2462518	.	+	.	ID=gene-ML2070;Name=ML2070;gbkey=Gene;gene=ML2070;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2460317	2462518	.	+	0	ID=cds-CAC31025.1;Parent=gene-ML2070;Dbxref=InterPro:IPR002035,UniProtKB/TrEMBL:Q9CBE8,NCBI_GP:CAC31025.1;Name=CAC31025.1;Note=Similar to Mycobacterium tuberculosis hypothetical 69.7 kda protein Rv1836c SW:YI36_MYCTU (Q50597) fasta scores: E(): 0%2C 66.0%25 in 714 aa.;gbkey=CDS;gene=ML2070;product=conserved hypothetical protein;protein_id=CAC31025.1;transl_table=11
AL450380.1	EMBL	pseudogene	2462544	2463346	.	+	.	ID=gene-ML2071;Name=ML2071;gbkey=Gene;gene=ML2071;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2462544	2463346	.	+	0	ID=cds-ML2071;Parent=gene-ML2071;Note=Possible pseudogene of M. tuberculosis orthologue Rv1833c (Best blastx score 229);gbkey=CDS;gene=ML2071;product=similar to 1%2C3%2C4%2C6-tetrachloro-1%2C4-cyclohexadien (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2463419	2466277	.	-	.	ID=gene-gcvB;Name=gcvB;gbkey=Gene;gene=gcvB;gene_biotype=protein_coding;gene_synonym=ML2072
AL450380.1	EMBL	CDS	2463419	2466277	.	-	0	ID=cds-CAC31027.1;Parent=gene-gcvB;Dbxref=GOA:O32915,InterPro:IPR003437,InterPro:IPR015421,InterPro:IPR015424,InterPro:IPR020580,InterPro:IPR020581,NCBI_GP:CAC31027.1;Name=CAC31027.1;Note=Similar to Mycobacterium tuberculosis probable glycine dehydrogenase [decarboxylating] SW:GCSP_MYCTU (Q50601) fasta scores: E(): 0%2C 84.7%25 in 942 aa%2C and to Escherichia coli glycine dehydrogenase [decarboxylating] SW:GCSP_ECOLI (P33195) fasta scores: E(): 0%2C 53.5%25 in 956 aa.;gbkey=CDS;gene=gcvB;product=glycine decarboxylase;protein_id=CAC31027.1;transl_table=11
AL450380.1	EMBL	gene	2466445	2467140	.	-	.	ID=gene-ML2073;Name=ML2073;gbkey=Gene;gene=ML2073;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2466445	2467140	.	-	0	ID=cds-CAC31028.1;Parent=gene-ML2073;Dbxref=GOA:Q7APZ6,InterPro:IPR000551,InterPro:IPR009061,UniProtKB/TrEMBL:Q7APZ6,NCBI_GP:CAC31028.1;Name=CAC31028.1;Note=Similar to Mycobacterium tuberculosis hypothetical 24.0 kda protein Rv1830 SW:YI30_MYCTU (Q50603) fasta scores: E(): 0%2C 90.0%25 in 231 aa%2C and to Streptomyces coelicolor hypothetical 19.1 kda protein TR:CAB88877 (EMBL:AL353861) fasta scores: E(): 3.7e-30%2C 64.8%25 in 145 aa.;gbkey=CDS;gene=ML2073;product=conserved hypothetical protein;protein_id=CAC31028.1;transl_table=11
AL450380.1	EMBL	gene	2467373	2467867	.	-	.	ID=gene-ML2074;Name=ML2074;gbkey=Gene;gene=ML2074;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2467373	2467867	.	-	0	ID=cds-CAC31029.1;Parent=gene-ML2074;Dbxref=GOA:Q7APZ5,InterPro:IPR003729,UniProtKB/TrEMBL:Q7APZ5,NCBI_GP:CAC31029.1;Name=CAC31029.1;Note=Similar to Mycobacterium tuberculosis hypothetical 18.1 kda protein Rv1829 SW:YI29_MYCTU (Q50604) fasta scores: E(): 0%2C 95.1%25 in 164 aa%2C and to Streptomyces coelicolor conserved hypothetical protein TR:CAB88878 (EMBL:AL353861) fasta scores: E(): 0%2C 60.9%25 in 161 aa.;gbkey=CDS;gene=ML2074;product=conserved hypothetical protein;protein_id=CAC31029.1;transl_table=11
AL450380.1	EMBL	gene	2467984	2468739	.	-	.	ID=gene-ML2075;Name=ML2075;gbkey=Gene;gene=ML2075;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2467984	2468739	.	-	0	ID=cds-CAC31030.1;Parent=gene-ML2075;Dbxref=GOA:Q7APZ4,InterPro:IPR000551,InterPro:IPR009061,UniProtKB/TrEMBL:Q7APZ4,NCBI_GP:CAC31030.1;Name=CAC31030.1;Note=Similar to Mycobacterium tuberculosis hypothetical 26.4 kda protein Rv1828 SW:YI28_MYCTU (Q50605) fasta scores: E(): 0%2C 87.6%25 in 251 aa%2C and to Streptomyces coelicolor hypothetical 26.5 kda protein TR:CAB88879 (EMBL:AL353861) fasta scores: E(): 1.1e-14%2C 41.4%25 in 237 aa.;gbkey=CDS;gene=ML2075;product=conserved hypothetical protein;protein_id=CAC31030.1;transl_table=11
AL450380.1	EMBL	gene	2468736	2469224	.	-	.	ID=gene-ML2076;Name=ML2076;gbkey=Gene;gene=ML2076;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2468736	2469224	.	-	0	ID=cds-CAC31031.1;Parent=gene-ML2076;Dbxref=InterPro:IPR000253,InterPro:IPR008984,UniProtKB/TrEMBL:Q7APZ3,NCBI_GP:CAC31031.1;Name=CAC31031.1;Note=Similar to Mycobacterium tuberculosis hypothetical 17.3 kda protein Rv1827 SW:YI27_MYCTU (Q50606) fasta scores: E(): 0%2C 87.0%25 in 161 aa%2C and to Streptomyces coelicolor hypothetical 28.1 kda protein TR:CAB88880 (EMBL:AL353861) fasta scores: E(): 1.9e-25%2C 54.6%25 in 141 aa. Contains Pfam match to entry PF00498 FHA%2C FHA domain.;gbkey=CDS;gene=ML2076;product=conserved hypothetical protein;protein_id=CAC31031.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2468805	2468996	.	-	.	ID=id-ML2076;Note=Pfam match to entry PF00498 FHA%2C FHA domain%2C score 83.90%2C E-value 3.2e-21;gbkey=misc_feature;gene=ML2076
AL450380.1	EMBL	gene	2469468	2469866	.	-	.	ID=gene-gcvH;Name=gcvH;gbkey=Gene;gene=gcvH;gene_biotype=protein_coding;gene_synonym=ML2077
AL450380.1	EMBL	CDS	2469468	2469866	.	-	0	ID=cds-CAC31032.1;Parent=gene-gcvH;Dbxref=GOA:O32920,InterPro:IPR002930,InterPro:IPR003016,InterPro:IPR011053,InterPro:IPR017453,NCBI_GP:CAC31032.1;Name=CAC31032.1;Note=Similar to Mycobacterium tuberculosis probable glycine cleavage system H protein SW:GCSH_MYCTU (Q50607) fasta scores: E(): 0%2C 78.4%25 in 134 aa%2C and to Escherichia coli glycine cleavage system H protein SW:GCSH_ECOLI (P23884) fasta scores: E(): 1.5e-22%2C 49.6%25 in 129 aa. Contains Pfam match to entry PF01597 GCV_H%2C Glycine cleavage H-protein. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.;gbkey=CDS;gene=gcvH;product=glycine cleavage system H protein;protein_id=CAC31032.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2469477	2469860	.	-	.	ID=id-gcvH;Note=Pfam match to entry PF01597 GCV_H%2C Glycine cleavage H-protein%2C score 180.80%2C E-value 2.3e-50;gbkey=misc_feature;gene=gcvH
AL450380.1	EMBL	sequence_feature	2469633	2469722	.	-	.	ID=id-gcvH-2;Note=PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site;gbkey=misc_feature;gene=gcvH
AL450380.1	EMBL	sequence_feature	2469696	2469719	.	-	.	ID=id-gcvH-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=gcvH
AL450380.1	EMBL	pseudogene	2469894	2470585	.	-	.	ID=gene-ML2078;Name=ML2078;gbkey=Gene;gene=ML2078;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2469894	2470585	.	-	0	ID=cds-ML2078;Parent=gene-ML2078;Note=Possible pseudogene of M. tuberculosis orthologue Rv1825 (Best blastx score 286);gbkey=CDS;gene=ML2078;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2470751	2471075	.	-	.	ID=gene-ML2079;Name=ML2079;gbkey=Gene;gene=ML2079;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2470751	2471075	.	-	0	ID=cds-ML2079;Parent=gene-ML2079;Note=Possible pseudogene of M. tuberculosis orthologue Rv1824 (Best blastx score 359);gbkey=CDS;gene=ML2079;product=small basic protein similar SBP_BACSU (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2471158	2472084	.	-	.	ID=gene-ML2080;Name=ML2080;gbkey=Gene;gene=ML2080;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2471158	2472084	.	-	0	ID=cds-ML2080;Parent=gene-ML2080;Note=Possible pseudogene of M. tuberculosis orthologue Rv1823 (Best blastx score 305);gbkey=CDS;gene=ML2080;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2472087	2472707	.	-	.	ID=gene-pgsA2;Name=pgsA2;gbkey=Gene;gene=pgsA2;gene_biotype=protein_coding;gene_synonym=ML2081
AL450380.1	EMBL	CDS	2472087	2472707	.	-	0	ID=cds-CAC31036.1;Parent=gene-pgsA2;Dbxref=GOA:Q7APZ2,InterPro:IPR000462,InterPro:IPR004570,UniProtKB/TrEMBL:Q7APZ2,NCBI_GP:CAC31036.1;Name=CAC31036.1;Note=Similar to Mycobacterium tuberculosis putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase SW:PGSA_MYCTU (Q50611) fasta scores: E(): 0%2C 76.6%25 in 205 aa%2C and to Escherichia coli CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase SW:PGSA_ECOLI (P06978) fasta scores: E(): 4.5e-11%2C 30.5%25 in 177 aa. Contains Pfam match to entry PF01066 CDP-OH_P_transf%2C CDP-alcohol phosphatidyltransferase. Contains PS00379 CDP-alcohol phosphatidyltransferases signature.%3B~Similar to and ML0979;gbkey=CDS;gene=pgsA2;product=CDP-diacylglycerol-glycerol-3-phosphate;protein_id=CAC31036.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2472132	2472584	.	-	.	ID=id-pgsA2;Note=Pfam match to entry PF01066 CDP-OH_P_transf%2C CDP-alcohol phosphatidyltransferase%2C score 169.60%2C E-value 5.4e-47;gbkey=misc_feature;gene=pgsA2
AL450380.1	EMBL	sequence_feature	2472477	2472545	.	-	.	ID=id-pgsA2-2;Note=PS00379 CDP-alcohol phosphatidyltransferases signature;gbkey=misc_feature;gene=pgsA2
AL450380.1	EMBL	gene	2472769	2475105	.	-	.	ID=gene-secA2;Name=secA2;gbkey=Gene;gene=secA2;gene_biotype=protein_coding;gene_synonym=ML2082
AL450380.1	EMBL	CDS	2472769	2475105	.	-	0	ID=cds-CAC31037.1;Parent=gene-secA2;Dbxref=GOA:O32922,InterPro:IPR000185,InterPro:IPR011115,InterPro:IPR011116,InterPro:IPR011130,InterPro:IPR014018,InterPro:IPR020937,InterPro:IPR026389,InterPro:IPR027417,NCBI_GP:CAC31037.1;Name=CAC31037.1;Note=Similar to Mycobacterium tuberculosis preprotein translocase secA 2 subunit SW:SEA2_MYCTU (Q50612) fasta scores: E(): 0%2C 87.0%25 in 782 aa%2C and to Bacillus subtilis preprotein translocase secA subunit SW:SECA_BACSU (P28366) fasta scores: E(): 0%2C 39.9%25 in 671 aa. Contains Pfam match to entry PF01043 SecA_protein%2C SecA protein%2C amino terminal region. Contains PS01312 Protein secA signatures.%3B~Similar to and ML0779;gbkey=CDS;gene=secA2;product=SecA%2C preprotein translocase subunit;protein_id=CAC31037.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2473594	2473641	.	-	.	ID=id-secA2;Note=PS01312 Protein secA signatures;gbkey=misc_feature;gene=secA2
AL450380.1	EMBL	sequence_feature	2473825	2475060	.	-	.	ID=id-secA2-2;Note=Pfam match to entry PF01043 SecA_protein%2C SecA protein%2C amino terminal region%2C score 791.90%2C E-value 1.2e-260;gbkey=misc_feature;gene=secA2
AL450380.1	EMBL	gene	2475213	2476859	.	-	.	ID=gene-ilvG;Name=ilvG;gbkey=Gene;gene=ilvG;gene_biotype=protein_coding;gene_synonym=ML2083
AL450380.1	EMBL	CDS	2475213	2476859	.	-	0	ID=cds-CAC31038.1;Parent=gene-ilvG;Dbxref=GOA:Q7APZ1,InterPro:IPR000399,InterPro:IPR011766,InterPro:IPR012000,InterPro:IPR012001,InterPro:IPR029035,InterPro:IPR029061,UniProtKB/TrEMBL:Q7APZ1,NCBI_GP:CAC31038.1;Name=CAC31038.1;Note=Similar to Mycobacterium tuberculosis probable acetolactate synthase SW:ILVG_MYCTU (Q50613) fasta scores: E(): 0%2C 86.1%25 in 548 aa%2C and to Bacillus subtilis acetolactate synthase large subunit SW:ILVB_BACSU (P37251%3B P94564) fasta scores: E(): 1.2e-32%2C 28.5%25 in 543 aa. Contains Pfam match to entry PF00205 TPP_enzymes%2C Thiamine pyrophosphate enzymes. Contains PS00187 Thiamine pyrophosphate enzymes signature.%3B~Similar to ML1696%2C ML2167 and ML0354;gbkey=CDS;gene=ilvG;product=acetolactate synthase II;protein_id=CAC31038.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2475261	2476799	.	-	.	ID=id-ilvG;Note=Pfam match to entry PF00205 TPP_enzymes%2C Thiamine pyrophosphate enzymes%2C score 254.00%2C E-value 2.4e-78;gbkey=misc_feature;gene=ilvG
AL450380.1	EMBL	sequence_feature	2475534	2475593	.	-	.	ID=id-ilvG-2;Note=PS00187 Thiamine pyrophosphate enzymes signature;gbkey=misc_feature;gene=ilvG
AL450380.1	EMBL	gene	2476953	2478869	.	+	.	ID=gene-ML2084;Name=ML2084;gbkey=Gene;gene=ML2084;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2476953	2478869	.	+	0	ID=cds-CAC31039.1;Parent=gene-ML2084;Dbxref=GOA:Q7APZ0,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR010509,InterPro:IPR011527,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7APZ0,NCBI_GP:CAC31039.1;Name=CAC31039.1;Note=Similar to Mycobacterium tuberculosis hypothetical ABC transporter ATP-binding protein Rv1819c SW:YI19_MYCTU (Q50614) fasta scores: E(): 0%2C 74.9%25 in 634 aa%2C and in C-term to Escherichia coli hypothetical ABC transporter ATP-binding protein in pqql-hipa intergenic region SW:YDDA_ECOLI (P31826%3B P76133%3B P76876) fasta scores: E(): 0%2C 29.9%25 in 551 aa. Contains Pfam match to entry PF00005 ABC_tran%2C ABC transporter. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00211 ABC transporters family signature.%3B~Similar to ML1089%2C ML1424%2C ML0848 and ML0590;gbkey=CDS;gene=ML2084;product=probable multidrug resistance pump;protein_id=CAC31039.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2478306	2478824	.	+	.	ID=id-ML2084;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 79.00%2C E-value 9.9e-20;gbkey=misc_feature;gene=ML2084
AL450380.1	EMBL	sequence_feature	2478327	2478350	.	+	.	ID=id-ML2084-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML2084
AL450380.1	EMBL	sequence_feature	2478600	2478644	.	+	.	ID=id-ML2084-3;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=ML2084
AL450380.1	EMBL	repeat_region	2479007	2479152	.	+	.	ID=id-AL450380.1:2479007..2479152;Note=146 bp sequence found at 5'-end of copies 6 and 7 of LEPREP;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	2479153	2481535	.	+	.	ID=id-AL450380.1:2479153..2481535;Note=Dispersed repeat%2C LEPREP%2C copy 7;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2479498	2479637	.	+	.	ID=gene-ML2085;Name=ML2085;gbkey=Gene;gene=ML2085;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2479498	2479637	.	+	0	ID=cds-ML2085;Parent=gene-ML2085;Note=Similar to Pseudomonas putida transposase tnpa1 TR:Q9R9U9 (EMBL:AJ245436) (355 aa) fasta scores: E(): 3.4e-05%2C 47.8%25 id in 46 aa%2C and to Agrobacterium tumefaciens transposase TR:Q44454 (EMBL:Z18270) (366 aa) fasta scores: E(): 0.00026%2C 41.3%25 id in 46 aa;gbkey=CDS;gene=ML2085;pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2479842	2480985	.	+	.	ID=gene-ML2086;Name=ML2086;gbkey=Gene;gene=ML2086;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2479842	2480985	.	+	0	ID=cds-ML2086;Parent=gene-ML2086;Note=Similar to many e.g. Cryphonectria parasitica (Chesnut blight fungus) putative maturase TR:AAF27656 (EMBL:AF218567) (778 aa) fasta scores: E(): 7.8e-11%2C 29.2%25 id in 216 aa;gbkey=CDS;gene=ML2086;product=putative group II intron maturase-related protein;pseudo=true;transl_table=11
AL450380.1	EMBL	stem_loop	2480469	2480522	.	+	.	ID=id-ML2086;gbkey=stem_loop;gene=ML2086;pseudo=true
AL450380.1	EMBL	pseudogene	2481250	2481348	.	+	.	ID=gene-ML2087;Name=ML2087;gbkey=Gene;gene=ML2087;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2481250	2481348	.	+	0	ID=cds-ML2087;Parent=gene-ML2087;Note=Similar to Agrobacterium tumefaciens transposase TR:Q44454 (EMBL:Z18270) (366 aa) fasta scores: E(): 0.0002%2C 51.5%25 id in 33 aa%2C and to Pseudomonas putida transposase tnpa1 TR:Q9R9U9 (EMBL:AJ245436) (355 aa) fasta scores: E(): 0.00088%2C 48.5%25 id in 33 aa;gbkey=CDS;gene=ML2087;pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2481536	2481552	.	+	.	ID=id-AL450380.1:2481536..2481552;Note=17 bp sequence found at 3'-end of copies 2%2C 3%2C 4 and 8 of LEPREP. NB in the other copies this sequence is 21 bp long;gbkey=repeat_region
AL450380.1	EMBL	gene	2481544	2482848	.	-	.	ID=gene-ML2088;Name=ML2088;gbkey=Gene;gene=ML2088;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2481544	2482848	.	-	0	ID=cds-CAC31043.1;Parent=gene-ML2088;Dbxref=GOA:Q9CBE7,InterPro:IPR001128,InterPro:IPR002397,UniProtKB/TrEMBL:Q9CBE7,NCBI_GP:CAC31043.1;Name=CAC31043.1;Note=Similar to Streptomyces coelicolor putative cytochrome p-450 hydroxylase TR:Q9X8Q3 (EMBL:AL049754) fasta scores: E(): 0%2C 37.4%25 in 401 aa%2C and to Mycobacterium tuberculosis putative cytochrome p450 rv1880c SW:YI80_MYCTU (O08464) fasta scores: E(): 0%2C 38.0%25 in 416 aa%2C and to Bacillus subtilis biotin biosynthesis%3B cytochrome p450-like enzyme SW:BIOI_BACSU (P53554) fasta scores: E(): 0%2C 37.1%25 in 383 aa. Contains Pfam match to entry PF00067 p450%2C Cytochrome P450.;gbkey=CDS;gene=ML2088;product=putative cytochrome p450;protein_id=CAC31043.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2481610	2482497	.	-	.	ID=id-ML2088;Note=Pfam match to entry PF00067 p450%2C Cytochrome P450%2C score 218.30%2C E-value 1.1e-61;gbkey=misc_feature;gene=ML2088
AL450380.1	EMBL	pseudogene	2483344	2485291	.	-	.	ID=gene-ML2089;Name=ML2089;gbkey=Gene;gene=ML2089;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2483344	2485291	.	-	0	ID=cds-ML2089;Parent=gene-ML2089;Note=Possible pseudogene of M. tuberculosis orthologue Rv0939 (Best blastx score 341);gbkey=CDS;gene=ML2089;product=probable dehydrase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2485291	2487350	.	-	.	ID=gene-ML2090;Name=ML2090;gbkey=Gene;gene=ML2090;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2485291	2487350	.	-	0	ID=cds-ML2090;Parent=gene-ML2090;Note=Possible pseudogene of M. tuberculosis orthologue Rv0938 (Best blastx score 431);gbkey=CDS;gene=ML2090;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2487709	2487894	.	+	.	ID=gene-ML2091;Name=ML2091;gbkey=Gene;gene=ML2091;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2487709	2487894	.	+	0	ID=cds-CAC31046.1;Parent=gene-ML2091;Dbxref=UniProtKB/TrEMBL:Q9CBE6,NCBI_GP:CAC31046.1;Name=CAC31046.1;Note=no database matches.;gbkey=CDS;gene=ML2091;product=hypothetical protein;protein_id=CAC31046.1;transl_table=11
AL450380.1	EMBL	pseudogene	2488224	2488856	.	+	.	ID=gene-ML2092;Name=ML2092;gbkey=Gene;gene=ML2092;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2488224	2488856	.	+	0	ID=cds-ML2092;Parent=gene-ML2092;Note=Possible pseudogene of M. tuberculosis orthologue Rv0937c (Best blastx score 333);gbkey=CDS;gene=ML2092;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2489131	2490045	.	-	.	ID=gene-pstA1;Name=pstA1;gbkey=Gene;gene=pstA1;gene_biotype=protein_coding;gene_synonym=ML2093
AL450380.1	EMBL	CDS	2489131	2490045	.	-	0	ID=cds-CAC31048.1;Parent=gene-pstA1;Dbxref=GOA:Q50097,InterPro:IPR000515,InterPro:IPR005672,NCBI_GP:CAC31048.1;Name=CAC31048.1;Note=Similar to Mycobacterium tuberculosis phosphate transport system permease protein pstc2 TR:O86344 (EMBL:Z47983) fasta scores: E(): 0%2C 83.0%25 in 317 aa%2C and to Escherichia coli phosphate transport system permease protein pstc SW:PSTC_ECOLI (P07653) fasta scores: E(): 1.7e-30%2C 33.9%25 in 304 aa. Contains Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component.;gbkey=CDS;gene=pstA1;product=membrane-bound component of phosphate transport;protein_id=CAC31048.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2489263	2489517	.	-	.	ID=id-pstA1;Note=Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component%2C score 60.70%2C E-value 3.1e-14;gbkey=misc_feature;gene=pstA1
AL450380.1	EMBL	gene	2490063	2491022	.	-	.	ID=gene-pstC2;Name=pstC2;gbkey=Gene;gene=pstC2;gene_biotype=protein_coding;gene_synonym=ML2094
AL450380.1	EMBL	CDS	2490063	2491022	.	-	0	ID=cds-CAC31049.1;Parent=gene-pstC2;Dbxref=GOA:Q50098,InterPro:IPR000515,InterPro:IPR011864,NCBI_GP:CAC31049.1;Name=CAC31049.1;Note=Similar to Mycobacterium tuberculosis phosphate transport system permease protein pstc2 TR:O86344 (EMBL:Z47983) fasta scores: E(): 0%2C 83.0%25 in 317 aa%2C and to Escherichia coli phosphate transport system permease protein pstc SW:PSTC_ECOLI (P07653) fasta scores: E(): 1.7e-30%2C 33.9%25 in 304 aa. Contains Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component. Contains PS00402 Binding-protein-dependent transport systems inner membrane comp sign..;gbkey=CDS;gene=pstC2;product=membrane-bound component of phosphate transport;protein_id=CAC31049.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2490204	2490437	.	-	.	ID=id-pstC2;Note=Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component%2C score 25.80%2C E-value 0.001;gbkey=misc_feature;gene=pstC2
AL450380.1	EMBL	sequence_feature	2490348	2490434	.	-	.	ID=id-pstC2-2;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp sign.;gbkey=misc_feature;gene=pstC2
AL450380.1	EMBL	gene	2491065	2492174	.	-	.	ID=gene-phoS2;Name=phoS2;gbkey=Gene;gene=phoS2;gene_biotype=protein_coding;gene_synonym=ML2095
AL450380.1	EMBL	CDS	2491065	2492174	.	-	0	ID=cds-CAC31050.1;Parent=gene-phoS2;Dbxref=GOA:Q9CBE5,InterPro:IPR005673,InterPro:IPR024370,NCBI_GP:CAC31050.1;Name=CAC31050.1;Note=Similar to Mycobacterium tuberculosis phosphate-binding protein 3 precursor TR:O86343 (EMBL:Z95209) fasta scores: E(): 0%2C 77.3%25 in 370 aa%2C and to Escherichia coli phosphate-binding periplasmic protein precursor SW:PSTS_ECOLI (P06128%3B P76744) fasta scores: E(): 4.4e-22%2C 31.2%25 in 333 aa. Contains Pfam match to entry PF01449 PstS%2C Phosphate-binding protein. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=phoS2;product=PstS component of phosphate uptake;protein_id=CAC31050.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2491173	2492039	.	-	.	ID=id-phoS2;Note=Pfam match to entry PF01449 PstS%2C Phosphate-binding protein%2C score 416.50%2C E-value 2.5e-121;gbkey=misc_feature;gene=phoS2
AL450380.1	EMBL	sequence_feature	2492109	2492141	.	-	.	ID=id-phoS2-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=phoS2
AL450380.1	EMBL	pseudogene	2492516	2493290	.	+	.	ID=gene-ML2096;Name=ML2096;gbkey=Gene;gene=ML2096;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2492516	2493290	.	+	0	ID=cds-ML2096;Parent=gene-ML2096;Note=Possible pseudogene of M. tuberculosis orthologue Rv0927c (Best blastx score 352);gbkey=CDS;gene=ML2096;product=short-chain alcohol dehydrogenase family (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2493318	2494399	.	+	.	ID=gene-ML2097;Name=ML2097;gbkey=Gene;gene=ML2097;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2493318	2494399	.	+	0	ID=cds-ML2097;Parent=gene-ML2097;Note=Possible pseudogene of M. tuberculosis orthologue Rv0926c (Best blastx score 224);gbkey=CDS;gene=ML2097;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2494502	2495782	.	+	.	ID=gene-mntH;Name=mntH;gbkey=Gene;gene=mntH;gene_biotype=protein_coding;gene_synonym=ML2098
AL450380.1	EMBL	CDS	2494502	2495782	.	+	0	ID=cds-CAC31053.1;Parent=gene-mntH;Dbxref=GOA:Q50103,InterPro:IPR001046,NCBI_GP:CAC31053.1;Name=CAC31053.1;Note=Similar to Mycobacterium tuberculosis probable manganese transport protein mntH SW:MNTH_MYCTU (O05916) fasta scores: E(): 0%2C 74.8%25 in 413 aa%2C and to Bacillus subtilis probable manganese transport protein mntH SW:MNTH_BACSU (P96593) fasta scores: E(): 0%2C 44.1%25 in 415 aa%2C and to Salmonella typhimurium manganese transport protein mnth SW:MNTH_SALTY (Q9RPF4) fasta scores: E(): 0%2C 43.1%25 in 406 aa. Contains Pfam match to entry PF01566 Nramp%2C Natural resistance-associated macrophage protein.;gbkey=CDS;gene=mntH;product=probable manganese transport protein;protein_id=CAC31053.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2494649	2495698	.	+	.	ID=id-mntH;Note=Pfam match to entry PF01566 Nramp%2C Natural resistance-associated macrophage protein%2C score 630.00%2C E-value 1.4e-185;gbkey=misc_feature;gene=mntH
AL450380.1	EMBL	pseudogene	2495872	2496846	.	-	.	ID=gene-nrdZ;Name=nrdZ;gbkey=Gene;gene=nrdZ;gene_biotype=pseudogene;gene_synonym=ML2099;pseudo=true
AL450380.1	EMBL	CDS	2495872	2496846	.	-	0	ID=cds-nrdZ;Parent=gene-nrdZ;Note=Possible pseudogene of M. tuberculosis orthologue nrdZ (Best blastx score 274);gbkey=CDS;gene=nrdZ;product=ribonucleotide reductase%2C class II (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2496920	2497140	.	-	.	ID=gene-ML2100;Name=ML2100;gbkey=Gene;gene=ML2100;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2496920	2497140	.	-	0	ID=cds-ML2100;Parent=gene-ML2100;Note=Possible pseudogene of M. tuberculosis paralog Rv2302 (Best blastx score 68);gbkey=CDS;gene=ML2100;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2497610	2497900	.	+	.	ID=gene-ML2101;Name=ML2101;gbkey=Gene;gene=ML2101;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2497610	2497900	.	+	0	ID=cds-ML2101;Parent=gene-ML2101;Note=Possible pseudogene of M. tuberculosis paralog Rv2028c (Best blastx score 91);gbkey=CDS;gene=ML2101;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2498685	2499833	.	+	.	ID=gene-lipL-2;Name=lipL;gbkey=Gene;gene=lipL;gene_biotype=pseudogene;gene_synonym=ML2102;pseudo=true
AL450380.1	EMBL	CDS	2498685	2499833	.	+	0	ID=cds-lipL-2;Parent=gene-lipL-2;Note=Possible pseudogene of M. tuberculosis paralog lipL (Best blastx score 311);gbkey=CDS;gene=lipL;product=esterase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2500772	2501538	.	-	.	ID=gene-ML2103;Name=ML2103;gbkey=Gene;gene=ML2103;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2500772	2501538	.	-	0	ID=cds-ML2103;Parent=gene-ML2103;Note=Possible pseudogene of M. tuberculosis orthologue Rv2631 (Best blastx score 259);gbkey=CDS;gene=ML2103;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2501667	2501999	.	-	.	ID=gene-ML2104;Name=ML2104;gbkey=Gene;gene=ML2104;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2501667	2501999	.	-	0	ID=cds-ML2104;Parent=gene-ML2104;Note=Possible pseudogene of M. tuberculosis orthologue Rv2630 (Best blastx score 180);gbkey=CDS;gene=ML2104;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2502006	2502427	.	-	.	ID=id-AL450380.1:2502006..2502427;Note=422 bp repeat%2C 100%25 identical to region 2504357..2504778;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2502407	2503140	.	-	.	ID=gene-ML2105;Name=ML2105;gbkey=Gene;gene=ML2105;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2502407	2503140	.	-	0	ID=cds-ML2105;Parent=gene-ML2105;Note=Possible pseudogene of M. tuberculosis orthologue Rv0574c (Best blastx score 197);gbkey=CDS;gene=ML2105;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2503368	2504635	.	+	.	ID=gene-ML2106;Name=ML2106;gbkey=Gene;gene=ML2106;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2503368	2504635	.	+	0	ID=cds-ML2106;Parent=gene-ML2106;Note=Possible pseudogene of M. tuberculosis orthologue Rv0571c (Best blastx score 879);gbkey=CDS;gene=ML2106;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	sequence_feature	2503371	2503907	.	+	.	ID=id-ML2106;Note=Pfam match to entry PF00156 Pribosyltran%2C Phosphoribosyl transferase domain%2C score 12.50%2C E-value 0.0027;gbkey=misc_feature;gene=ML2106;pseudo=true
AL450380.1	EMBL	repeat_region	2504357	2504778	.	-	.	ID=id-AL450380.1:2504357..2504778;Note=422 bp repeat%2C 100%25 identical to region 2502006..2502427;gbkey=repeat_region
AL450380.1	EMBL	gene	2506601	2506673	.	+	.	ID=gene-argT;Name=argT;gbkey=Gene;gene=argT;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	2506601	2506673	.	+	.	ID=rna-argT;Parent=gene-argT;Note=tRNA Arg anticodon CCT%2C Cove score 73.39;gbkey=tRNA;gene=argT;product=tRNA-Arg
AL450380.1	EMBL	exon	2506601	2506673	.	+	.	ID=exon-argT-1;Parent=rna-argT;Note=tRNA Arg anticodon CCT%2C Cove score 73.39;gbkey=tRNA;gene=argT;product=tRNA-Arg
AL450380.1	EMBL	pseudogene	2507105	2507431	.	-	.	ID=gene-ML2107;Name=ML2107;gbkey=Gene;gene=ML2107;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2507105	2507431	.	-	0	ID=cds-ML2107;Parent=gene-ML2107;Note=Possible pseudogene of M. tuberculosis orthologue Rv0919 (Best blastx score 197);gbkey=CDS;gene=ML2107;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2507526	2507820	.	-	.	ID=gene-ML2108;Name=ML2108;gbkey=Gene;gene=ML2108;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2507526	2507820	.	-	0	ID=cds-ML2108;Parent=gene-ML2108;Note=Possible pseudogene of M. tuberculosis orthologue Rv0918 (Best blastx score 147);gbkey=CDS;gene=ML2108;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2509945	2510857	.	+	.	ID=gene-ML2109;Name=ML2109;gbkey=Gene;gene=ML2109;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2509945	2510857	.	+	0	ID=cds-ML2109;Parent=gene-ML2109;Note=Possible pseudogene of M. tuberculosis orthologue Rv0914c (Best blastx score 322);gbkey=CDS;gene=ML2109;product=lipid transfer protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2510862	2512332	.	+	.	ID=gene-ML2110;Name=ML2110;gbkey=Gene;gene=ML2110;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2510862	2512332	.	+	0	ID=cds-ML2110;Parent=gene-ML2110;Note=Possible pseudogene of M. tuberculosis orthologue Rv0913c (Best blastx score 498);gbkey=CDS;gene=ML2110;product=probable dioxygenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2512539	2512973	.	-	.	ID=gene-ML2111;Name=ML2111;gbkey=Gene;gene=ML2111;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2512539	2512973	.	-	0	ID=cds-CAC31066.1;Parent=gene-ML2111;Dbxref=UniProtKB/TrEMBL:Q50121,NCBI_GP:CAC31066.1;Name=CAC31066.1;Note=Similar to Mycobacterium tuberculosis hypothetical 15.4 kda protein TR:O05904 (EMBL:Z95210) fasta scores: E(): 0%2C 69.5%25 in 141 aa.;gbkey=CDS;gene=ML2111;product=conserved hypothetical protein;protein_id=CAC31066.1;transl_table=11
AL450380.1	EMBL	pseudogene	2513072	2513800	.	-	.	ID=gene-ML2112;Name=ML2112;gbkey=Gene;gene=ML2112;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2513072	2513800	.	-	0	ID=cds-ML2112;Parent=gene-ML2112;Note=Possible pseudogene of M. tuberculosis orthologue Rv0911 (Best blastx score 142);gbkey=CDS;gene=ML2112;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2513870	2514415	.	-	.	ID=gene-ML2113;Name=ML2113;gbkey=Gene;gene=ML2113;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2513870	2514415	.	-	0	ID=cds-CAC31068.1;Parent=gene-ML2113;Dbxref=InterPro:IPR019587,InterPro:IPR023393,UniProtKB/TrEMBL:Q50123,NCBI_GP:CAC31068.1;Name=CAC31068.1;Note=Similar to Mycobacterium tuberculosis hypothetical 15.8 kda protein TR:O05902 (EMBL:Z95210) fasta scores: E(): 0%2C 83.9%25 in 143 aa%2C and to Mycobacterium tuberculosis hypothetical 15.3 kda protein Rv1546 SW:YF46_MYCTU (Q10780) fasta scores: E(): 1e-19%2C 38.0%25 in 142 aa.;gbkey=CDS;gene=ML2113;product=conserved hypothetical protein;protein_id=CAC31068.1;transl_table=11
AL450380.1	EMBL	gene	2514412	2514582	.	-	.	ID=gene-ML2114;Name=ML2114;gbkey=Gene;gene=ML2114;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2514412	2514582	.	-	0	ID=cds-CAC31069.1;Parent=gene-ML2114;Dbxref=InterPro:IPR028037,UniProtKB/TrEMBL:Q9CBE3,NCBI_GP:CAC31069.1;Name=CAC31069.1;Note=Similar to Mycobacterium tuberculosis hypothetical 6.4 kda protein TR:O05901 (EMBL:Z95210) fasta scores: E(): 1.8e-07%2C 61.9%25 in 42 aa%2C and to Streptomyces coelicolor hypothetical 9.9 kda protein TR:O69965 (EMBL:AL022268) fasta scores: E(): 0.038%2C 41.3%25 in 46 aa.;gbkey=CDS;gene=ML2114;product=conserved hypothetical protein;protein_id=CAC31069.1;transl_table=11
AL450380.1	EMBL	pseudogene	2514730	2516701	.	-	.	ID=gene-ctpE;Name=ctpE;gbkey=Gene;gene=ctpE;gene_biotype=pseudogene;gene_synonym=ML2115;pseudo=true
AL450380.1	EMBL	CDS	2514730	2516701	.	-	0	ID=cds-ctpE;Parent=gene-ctpE;Note=Possible pseudogene of M. tuberculosis orthologue ctpE (Best blastx score 568);gbkey=CDS;gene=ctpE;product=probable cation transport ATPase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2516698	2517560	.	-	.	ID=gene-ML2116;Name=ML2116;gbkey=Gene;gene=ML2116;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2516698	2517560	.	-	0	ID=cds-ML2116;Parent=gene-ML2116;Note=Possible pseudogene of M. tuberculosis orthologue Rv0907 (Best blastx score 178);gbkey=CDS;gene=ML2116;product=probable penicillin binding protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2517652	2518636	.	-	.	ID=gene-ML2117;Name=ML2117;gbkey=Gene;gene=ML2117;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2517652	2518636	.	-	0	ID=cds-ML2117;Parent=gene-ML2117;Note=Possible pseudogene of M. tuberculosis orthologue Rv0906 (Best blastx score 599);gbkey=CDS;gene=ML2117;product=probable membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2518770	2519513	.	-	.	ID=gene-echA6;Name=echA6;gbkey=Gene;gene=echA6;gene_biotype=protein_coding;gene_synonym=ML2118
AL450380.1	EMBL	CDS	2518770	2519513	.	-	0	ID=cds-CAC31073.1;Parent=gene-echA6;Dbxref=GOA:Q50130,InterPro:IPR001753,InterPro:IPR018376,InterPro:IPR029045,NCBI_GP:CAC31073.1;Name=CAC31073.1;Note=Similar to Mycobacterium tuberculosis probable enoyl-coa hydratase echa6 SW:ECH6_MYCTU (Q10533) fasta scores: E(): 0%2C 85.8%25 in 247 aa%2C and to Escherichia coli probable enoyl-coa hydratase paaf SW:PAAF_ECOLI (P76082%3B P78288%3B O53014) fasta scores: E(): 3.1e-18%2C 32.1%25 in 252 aa. Contains Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family.;gbkey=CDS;gene=echA6;product=enoyl-CoA hydratase/isomerase superfamily member;protein_id=CAC31073.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2518983	2519483	.	-	.	ID=id-echA6;Note=Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family%2C score 104.70%2C E-value 1.8e-27;gbkey=misc_feature;gene=echA6
AL450380.1	EMBL	pseudogene	2519540	2520855	.	+	.	ID=gene-accD3;Name=accD3;gbkey=Gene;gene=accD3;gene_biotype=pseudogene;gene_synonym=ML2119;pseudo=true
AL450380.1	EMBL	CDS	2519540	2520855	.	+	0	ID=cds-accD3;Parent=gene-accD3;Note=Possible pseudogene of M. tuberculosis orthologue accD3 (Best blastx score 1142);gbkey=CDS;gene=accD3;product=acetyl/propionyl CoA carboxylase [beta] subunit (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2521020	2521367	.	+	.	ID=gene-ML2120;Name=ML2120;gbkey=Gene;gene=ML2120;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2521020	2521367	.	+	0	ID=cds-ML2120;Parent=gene-ML2120;Note=Possible pseudogene of M. tuberculosis paralog Rv1482c (Best blastx score 90);gbkey=CDS;gene=ML2120;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2521540	2521950	.	-	.	ID=gene-ML2121;Name=ML2121;gbkey=Gene;gene=ML2121;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2521540	2521950	.	-	0	ID=cds-CAC31076.1;Parent=gene-ML2121;Dbxref=UniProtKB/TrEMBL:Q7APY9,NCBI_GP:CAC31076.1;Name=CAC31076.1;Note=Similar to Streptomyces coelicolor putative tetr-family regulator SC5F8.13 TR:CAB93741 (EMBL:AL357613) fasta scores: E(): 4.6e-12%2C 48.5%25 in 97 aa.;gbkey=CDS;gene=ML2121;product=conserved hypothetical protein;protein_id=CAC31076.1;transl_table=11
AL450380.1	EMBL	pseudogene	2522196	2523797	.	+	.	ID=gene-ML2122;Name=ML2122;gbkey=Gene;gene=ML2122;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2522196	2523797	.	+	0	ID=cds-ML2122;Parent=gene-ML2122;Note=Possible pseudogene of M. tuberculosis paralog Rv0785 (Best blastx score 219);gbkey=CDS;gene=ML2122;product=putative dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2524150	2524851	.	+	.	ID=gene-ML2123;Name=ML2123;gbkey=Gene;gene=ML2123;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2524150	2524851	.	+	0	ID=cds-CAC31078.1;Parent=gene-ML2123;Dbxref=GOA:Q50136,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,NCBI_GP:CAC31078.1;Name=CAC31078.1;Note=Similar to Mycobacterium tuberculosis probable transcriptional activator protein cy31.31c TR:Q10531 (EMBL:Z73101) fasta scores: E(): 0%2C 95.7%25 in 233 aa%2C and to Pseudomonas syringae transcriptional activator protein copr SW:COPR_PSESM (Q02540) fasta scores: E(): 2.5e-32%2C 43.6%25 in 225 aa. Contains Pfam match to entry PF00486 trans_reg_C%2C Transcriptional regulatory protein%2C C terminal. Contains Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain.;gbkey=CDS;gene=ML2123;product=two-component response regulator;protein_id=CAC31078.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2524171	2524506	.	+	.	ID=id-ML2123;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 131.40%2C E-value 1.6e-35;gbkey=misc_feature;gene=ML2123
AL450380.1	EMBL	sequence_feature	2524615	2524830	.	+	.	ID=id-ML2123-2;Note=Pfam match to entry PF00486 trans_reg_C%2C Transcriptional regulatory protein%2C C terminal%2C score 107.00%2C E-value 1.1e-30;gbkey=misc_feature;gene=ML2123
AL450380.1	EMBL	gene	2524869	2526209	.	+	.	ID=gene-ML2124;Name=ML2124;gbkey=Gene;gene=ML2124;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2524869	2526209	.	+	0	ID=cds-CAC31079.1;Parent=gene-ML2124;Dbxref=GOA:O33071,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,NCBI_GP:CAC31079.1;Name=CAC31079.1;Note=Similar to Mycobacterium tuberculosis probable sensor-like histidine kinase rv0902c SW:Y902_MYCTU (Q10560) fasta scores: E(): 0%2C 92.4%25 in 446 aa%2C and to Escherichia coli sensor protein cpxa SW:CPXA_ECOLI (P08336) fasta scores: E(): 7e-14%2C 28.9%25 in 301 aa. Contains Pfam match to entry PF00672 DUF5%2C Domain found in bacterial signal proteins. Contains Pfam match to entry PF00512 signal%2C Histidine kinase.;gbkey=CDS;gene=ML2124;product=sensor histidine kinase;protein_id=CAC31079.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2525316	2525525	.	+	.	ID=id-ML2124;Note=Pfam match to entry PF00672 DUF5%2C Domain found in bacterial signal proteins%2C score 51.60%2C E-value 1.7e-11;gbkey=misc_feature;gene=ML2124
AL450380.1	EMBL	sequence_feature	2525586	2526197	.	+	.	ID=id-ML2124-2;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 106.50%2C E-value 5e-28;gbkey=misc_feature;gene=ML2124
AL450380.1	EMBL	pseudogene	2526237	2526623	.	-	.	ID=gene-ML2125;Name=ML2125;gbkey=Gene;gene=ML2125;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2526237	2526623	.	-	0	ID=cds-ML2125;Parent=gene-ML2125;Note=Possible pseudogene of M. tuberculosis orthologue Rv0901 (Best blastx score 154);gbkey=CDS;gene=ML2125;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2526810	2527782	.	-	.	ID=gene-ompA;Name=ompA;gbkey=Gene;gene=ompA;gene_biotype=pseudogene;gene_synonym=ML2126;pseudo=true
AL450380.1	EMBL	CDS	2526810	2527782	.	-	0	ID=cds-ompA;Parent=gene-ompA;Note=Possible pseudogene of M. tuberculosis orthologue ompA (Best blastx score 201);gbkey=CDS;gene=ompA;product=member of OmpA family (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2528069	2529416	.	+	.	ID=gene-ML2127;Name=ML2127;gbkey=Gene;gene=ML2127;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2528069	2529416	.	+	0	ID=cds-ML2127;Parent=gene-ML2127;Note=Possible pseudogene of M. tuberculosis orthologue Rv0897c (Best blastx score 236);gbkey=CDS;gene=ML2127;product=possible oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2529427	2530544	.	-	.	ID=gene-PPE-11;Name=PPE;gbkey=Gene;gene=PPE;gene_biotype=pseudogene;gene_synonym=ML2128;pseudo=true
AL450380.1	EMBL	CDS	2529427	2530544	.	-	0	ID=cds-PPE-8;Parent=gene-PPE-11;Note=Possible pseudogene of M. tuberculosis paralog PPE (Best blastx score 182);gbkey=CDS;gene=PPE;product=PPE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2530687	2530848	.	-	.	ID=gene-ML2129;Name=ML2129;gbkey=Gene;gene=ML2129;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2530687	2530848	.	-	0	ID=cds-CAC31084.1;Parent=gene-ML2129;Dbxref=NCBI_GP:CAC31084.1;Name=CAC31084.1;Note=Similar to Mycobacterium tuberculosis PE-family protein TR:O53690 (EMBL:AL021930) fasta scores: E(): 1.6e-05%2C 60.7%25 in 56 aa.;gbkey=CDS;gene=ML2129;product=PE-family protein (pseudogene);protein_id=CAC31084.1;transl_table=11
AL450380.1	EMBL	gene	2531614	2532909	.	-	.	ID=gene-gltA2;Name=gltA2;gbkey=Gene;gene=gltA2;gene_biotype=protein_coding;gene_synonym=ML2130
AL450380.1	EMBL	CDS	2531614	2532909	.	-	0	ID=cds-CAC31085.1;Parent=gene-gltA2;Dbxref=GOA:Q7APY8,InterPro:IPR002020,InterPro:IPR010953,InterPro:IPR016141,InterPro:IPR016142,InterPro:IPR016143,InterPro:IPR019810,InterPro:IPR024176,UniProtKB/TrEMBL:Q7APY8,NCBI_GP:CAC31085.1;Name=CAC31085.1;Note=Similar to Mycobacterium tuberculosis citrate synthase 1 SW:CISY_MYCTU (Q10530) fasta scores: E(): 0%2C 91.0%25 in 431 aa%2C and to Corynebacterium glutamicum citrate synthase SW:CISY_CORGL (P42457) fasta scores: E(): 0%2C 62.7%25 in 432 aa. Contains Pfam match to entry PF00285 citrate_synt%2C Citrate synthase. Contains PS00480 Citrate synthase signature.;gbkey=CDS;gene=gltA2;product=citrate synthase 1;protein_id=CAC31085.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2531671	2532768	.	-	.	ID=id-gltA2;Note=Pfam match to entry PF00285 citrate_synt%2C Citrate synthase%2C score 640.50%2C E-value 4.6e-201;gbkey=misc_feature;gene=gltA2
AL450380.1	EMBL	sequence_feature	2531956	2531994	.	-	.	ID=id-gltA2-2;Note=PS00480 Citrate synthase signature;gbkey=misc_feature;gene=gltA2
AL450380.1	EMBL	gene	2533158	2533778	.	-	.	ID=gene-pdxH;Name=pdxH;gbkey=Gene;gene=pdxH;gene_biotype=protein_coding;gene_synonym=ML2131
AL450380.1	EMBL	CDS	2533158	2533778	.	-	0	ID=cds-CAC31086.1;Parent=gene-pdxH;Dbxref=GOA:O33065,InterPro:IPR000659,InterPro:IPR011576,InterPro:IPR012349,InterPro:IPR019576,InterPro:IPR019740,NCBI_GP:CAC31086.1;Name=CAC31086.1;Note=Similar to Mycobacterium tuberculosis pyridoxamine 5'-phosphate oxidase SW:PDXH_MYCTU (O06207) fasta scores: E(): 0%2C 69.3%25 in 205 aa%2C and to Escherichia coli pyridoxamine 5'-phosphate oxidase SW:PDXH_ECOLI (P28225) fasta scores: E(): 9.8e-27%2C 43.3%25 in 171 aa. Contains Pfam match to entry PF01243 Pyridox_oxidase%2C Pyridoxamine 5'-phosphate oxidase. Contains PS01064 Pyridoxamine 5'-phosphate oxidase signature.;gbkey=CDS;gene=pdxH;product=pyridoxamine 5'-phosphate oxidase;protein_id=CAC31086.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2533161	2533778	.	-	.	ID=id-pdxH;Note=Pfam match to entry PF01243 Pyridox_oxidase%2C Pyridoxamine 5'-phosphate oxidase%2C score 198.40%2C E-value 1.1e-55;gbkey=misc_feature;gene=pdxH
AL450380.1	EMBL	sequence_feature	2533200	2533241	.	-	.	ID=id-pdxH-2;Note=PS01064 Pyridoxamine 5'-phosphate oxidase signature;gbkey=misc_feature;gene=pdxH
AL450380.1	EMBL	pseudogene	2533956	2535001	.	+	.	ID=gene-citA;Name=citA;gbkey=Gene;gene=citA;gene_biotype=pseudogene;gene_synonym=ML2132;pseudo=true
AL450380.1	EMBL	CDS	2533956	2535001	.	+	0	ID=cds-citA;Parent=gene-citA;Note=Possible pseudogene of M. tuberculosis orthologue citA (Best blastx score 650);gbkey=CDS;gene=citA;product=citrate synthase 2 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2535352	2535790	.	+	.	ID=gene-ML2133;Name=ML2133;gbkey=Gene;gene=ML2133;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2535352	2535790	.	+	0	ID=cds-ML2133;Parent=gene-ML2133;Note=Possible pseudogene of M. tuberculosis orthologue Rv0887c (Best blastx score 221);gbkey=CDS;gene=ML2133;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2535813	2537480	.	-	.	ID=gene-fprB;Name=fprB;gbkey=Gene;gene=fprB;gene_biotype=protein_coding;gene_synonym=ML2134
AL450380.1	EMBL	CDS	2535813	2537480	.	-	0	ID=cds-CAC31089.1;Parent=gene-fprB;Dbxref=GOA:O33064,InterPro:IPR001450,InterPro:IPR016040,InterPro:IPR017896,InterPro:IPR017900,InterPro:IPR021163,NCBI_GP:CAC31089.1;Name=CAC31089.1;Note=Similar to Mycobacterium tuberculosis probable ferredoxin/ferredoxin--NADP reductase SW:FPRB_MYCTU (Q10547) fasta scores: E(): 0%2C 76.6%25 in 560 aa%2C and to Homo sapiens NADPH:adrenodoxin oxidoreductase precursor SW:ADRO_HUMAN (P22570%3B Q13716) fasta scores: E(): 2.9e-30%2C 37.4%25 in 484 aa. Contains 2 Pfam matches to entry PF00037 fer4%2C 4Fe-4S binding domain. Contains PS00198 4Fe-4S ferredoxins.;gbkey=CDS;gene=fprB;product=ferredoxin%2C ferredoxin-NADP reductase;protein_id=CAC31089.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2537295	2537366	.	-	.	ID=id-fprB;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 34.60%2C E-value 2.2e-06;gbkey=misc_feature;gene=fprB
AL450380.1	EMBL	sequence_feature	2537310	2537345	.	-	.	ID=id-fprB-2;Note=PS00198 4Fe-4S ferredoxins;gbkey=misc_feature;gene=fprB
AL450380.1	EMBL	sequence_feature	2537406	2537477	.	-	.	ID=id-fprB-3;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 19.30%2C E-value 0.0026;gbkey=misc_feature;gene=fprB
AL450380.1	EMBL	gene	2537496	2538521	.	-	.	ID=gene-ML2135;Name=ML2135;gbkey=Gene;gene=ML2135;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2537496	2538521	.	-	0	ID=cds-CAC31090.1;Parent=gene-ML2135;Dbxref=GOA:Q7APY7,InterPro:IPR009078,InterPro:IPR025859,UniProtKB/TrEMBL:Q7APY7,NCBI_GP:CAC31090.1;Name=CAC31090.1;Note=Similar to Mycobacterium tuberculosis hypothetical 39.8 kda protein rv0885 SW:Y885_MYCTU (Q10546) fasta scores: E(): 0%2C 83.9%25 in 341 aa%2C and to Streptomyces coelicolor putative membrane protein TR:Q9XAE8 (EMBL:AL079356) fasta scores: E(): 1.5e-13%2C 27.1%25 in 255 aa. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2135;product=possible transmembrane protein;protein_id=CAC31090.1;transl_table=11
AL450380.1	EMBL	gene	2538735	2539865	.	+	.	ID=gene-serC;Name=serC;gbkey=Gene;gene=serC;gene_biotype=protein_coding;gene_synonym=ML2136
AL450380.1	EMBL	CDS	2538735	2539865	.	+	0	ID=cds-CAC31091.1;Parent=gene-serC;Dbxref=GOA:O33062,InterPro:IPR000192,InterPro:IPR006272,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR022278,NCBI_GP:CAC31091.1;Name=CAC31091.1;Note=Similar to Mycobacterium tuberculosis putative phosphoserine aminotransferase SW:SERC_MYCTU (Q10534) fasta scores: E(): 0%2C 87.5%25 in 376 aa%2C and to Methanosarcina barkeri phosphoserine aminotransferase SW:SERC_METBA (P52878) fasta scores: E(): 4.5e-12%2C 24.7%25 in 369 aa.;gbkey=CDS;gene=serC;product=putative phosphoserine aminotransferase;protein_id=CAC31091.1;transl_table=11
AL450380.1	EMBL	gene	2539983	2540738	.	+	.	ID=gene-ML2137;Name=ML2137;gbkey=Gene;gene=ML2137;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2539983	2540738	.	+	0	ID=cds-CAC31092.1;Parent=gene-ML2137;Dbxref=InterPro:IPR021421,UniProtKB/TrEMBL:Q7APY6,NCBI_GP:CAC31092.1;Name=CAC31092.1;Note=Similar to Mycobacterium tuberculosis hypothetical 27.4 kda protein rv0883c SW:Y883_MYCTU (Q10545) fasta scores: E(): 0%2C 79.4%25 in 253 aa%2C and to Streptomyces coelicolor hypothetical 39.0 kda protein TR:O50529 (EMBL:AL009204) fasta scores: E(): 2.2e-19%2C 36.0%25 in 247 aa.;gbkey=CDS;gene=ML2137;product=conserved hypothetical protein;protein_id=CAC31092.1;transl_table=11
AL450380.1	EMBL	pseudogene	2540841	2541038	.	-	.	ID=gene-ML2138;Name=ML2138;gbkey=Gene;gene=ML2138;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2540841	2541038	.	-	0	ID=cds-ML2138;Parent=gene-ML2138;Note=Possible pseudogene of M. tuberculosis orthologue Rv0882 (Best blastx score 124);gbkey=CDS;gene=ML2138;product=unknown hydrophobic protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2541150	2541949	.	-	.	ID=gene-ML2139;Name=ML2139;gbkey=Gene;gene=ML2139;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2541150	2541949	.	-	0	ID=cds-ML2139;Parent=gene-ML2139;Note=Possible pseudogene of M. tuberculosis orthologue Rv0881 (Best blastx score 255);gbkey=CDS;gene=ML2139;product=possible rRNA methyltransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2541985	2542416	.	-	.	ID=gene-ML2140;Name=ML2140;gbkey=Gene;gene=ML2140;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2541985	2542416	.	-	0	ID=cds-CAC31095.1;Parent=gene-ML2140;Dbxref=GOA:O33060,InterPro:IPR000835,InterPro:IPR011991,InterPro:IPR023187,NCBI_GP:CAC31095.1;Name=CAC31095.1;Note=Similar to Mycobacterium tuberculosis hypothetical 15.6 kda protein Rv0880 SW:Y880_MYCTU (Q10542) fasta scores: E(): 0%2C 90.2%25 in 143 aa%2C and to Streptomyces coelicolor putative marR-family protein TR:CAB93410 (EMBL:AL357524) fasta scores: E(): 1.6e-13%2C 39.6%25 in 134 aa. Contains Pfam match to entry PF01047 MarR%2C MarR family.%3B~Similar to ML2696 and ML0550;gbkey=CDS;gene=ML2140;product=putative MarR-family protein;protein_id=CAC31095.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2542012	2542323	.	-	.	ID=id-ML2140;Note=Pfam match to entry PF01047 MarR%2C MarR family%2C score 109.80%2C E-value 5.1e-29;gbkey=misc_feature;gene=ML2140
AL450380.1	EMBL	gene	2542620	2542895	.	+	.	ID=gene-ML2141;Name=ML2141;gbkey=Gene;gene=ML2141;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2542620	2542895	.	+	0	ID=cds-CAC31096.1;Parent=gene-ML2141;Dbxref=InterPro:IPR019681,UniProtKB/TrEMBL:Q7APY5,NCBI_GP:CAC31096.1;Name=CAC31096.1;Note=Similar to Mycobacterium tuberculosis hypothetical 9.5 kda protein Rv0879c SW:Y879_MYCTU (Q10541) fasta scores: E(): 6.6e-25%2C 76.9%25 in 91 aa.;gbkey=CDS;gene=ML2141;product=conserved hypothetical protein;protein_id=CAC31096.1;transl_table=11
AL450380.1	EMBL	gene	2543007	2543816	.	-	.	ID=gene-ML2142;Name=ML2142;gbkey=Gene;gene=ML2142;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2543007	2543816	.	-	0	ID=cds-CAC31097.1;Parent=gene-ML2142;Dbxref=InterPro:IPR021391,UniProtKB/TrEMBL:Q7APY4,NCBI_GP:CAC31097.1;Name=CAC31097.1;Note=Similar to Mycobacterium tuberculosis hypothetical 27.5 kda protein rv0877 SW:Y877_MYCTU (Q10539) fasta scores: E(): 0%2C 80.5%25 in 257 aa%2C and to Streptomyces coelicolor hypothetical 32.2 kda protein TR:CAB93404 (EMBL:AL357524) fasta scores: E(): 2.5e-19%2C 43.3%25 in 270 aa.;gbkey=CDS;gene=ML2142;product=conserved hypothetical protein;protein_id=CAC31097.1;transl_table=11
AL450380.1	EMBL	gene	2543926	2545665	.	+	.	ID=gene-ML2143;Name=ML2143;gbkey=Gene;gene=ML2143;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2543926	2545665	.	+	0	ID=cds-CAC31098.1;Parent=gene-ML2143;Dbxref=GOA:O33057,InterPro:IPR011701,InterPro:IPR016196,NCBI_GP:CAC31098.1;Name=CAC31098.1;Note=Similar to Mycobacterium tuberculosis hypothetical 57.9 kda protein rv0876c SW:Y876_MYCTU (Q10564) fasta scores: E(): 0%2C 81.2%25 in 568 aa%2C and to Streptomyces coelicolor putative integral membrane protein TR:CAB93403 (EMBL:AL357524) fasta scores: E(): 5.3e-16%2C 38.8%25 in 448 aa. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2143;product=possible membrane protein;protein_id=CAC31098.1;transl_table=11
AL450380.1	EMBL	gene	2545673	2546161	.	+	.	ID=gene-ML2144;Name=ML2144;gbkey=Gene;gene=ML2144;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2545673	2546161	.	+	0	ID=cds-CAC31099.1;Parent=gene-ML2144;Dbxref=InterPro:IPR024495,UniProtKB/TrEMBL:Q7APY3,NCBI_GP:CAC31099.1;Name=CAC31099.1;Note=Similar to Mycobacterium tuberculosis hypothetical 17.8 kda protein Rv0875c precursor SW:Y875_MYCTU (Q10537) fasta scores: E(): 0%2C 73.5%25 in 155 aa. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=ML2144;product=possible exported protein;protein_id=CAC31099.1;transl_table=11
AL450380.1	EMBL	pseudogene	2547379	2548678	.	+	.	ID=gene-cycA;Name=cycA;gbkey=Gene;gene=cycA;gene_biotype=pseudogene;gene_synonym=ML2145;pseudo=true
AL450380.1	EMBL	CDS	2547379	2548678	.	+	0	ID=cds-cycA;Parent=gene-cycA;Note=Possible pseudogene of M. tuberculosis paralog cycA (Best blastx score 255);gbkey=CDS;gene=cycA;product=transport of D-alanine%2C D-serine and glycine (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2548823	2550692	.	-	.	ID=gene-fadE10;Name=fadE10;gbkey=Gene;gene=fadE10;gene_biotype=pseudogene;gene_synonym=ML2146;pseudo=true
AL450380.1	EMBL	CDS	2548823	2550692	.	-	0	ID=cds-fadE10;Parent=gene-fadE10;Note=Possible pseudogene of M. tuberculosis orthologue fadE10 (Best blastx score 502);gbkey=CDS;gene=fadE10;product=acyl-CoA dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2552011	2552421	.	-	.	ID=gene-cspB;Name=cspB;gbkey=Gene;gene=cspB;gene_biotype=protein_coding;gene_synonym=ML2147
AL450380.1	EMBL	CDS	2552011	2552421	.	-	0	ID=cds-CAC31102.1;Parent=gene-cspB;Dbxref=GOA:Q7APY2,InterPro:IPR002059,InterPro:IPR011129,InterPro:IPR012340,UniProtKB/TrEMBL:Q7APY2,NCBI_GP:CAC31102.1;Name=CAC31102.1;Note=Similar to Mycobacterium tuberculosis cold shock protein b TR:O53883 (EMBL:AL022004) fasta scores: E(): 0%2C 86.0%25 in 136 aa%2C and to Bacillus cereus cold shock-like protein cspc SW:CSPC_BACCE (Q45098) fasta scores: E(): 5.2e-08%2C 54.4%25 in 57 aa. Contains Pfam match to entry PF00313 CSD%2C 'Cold-shock' DNA-binding domain.%3B~Similar to and ML0198;gbkey=CDS;gene=cspB;product=probable cold shock protein;protein_id=CAC31102.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2552227	2552421	.	-	.	ID=id-cspB;Note=Pfam match to entry PF00313 CSD%2C 'Cold-shock' DNA-binding domain%2C score 86.90%2C E-value 4.8e-23;gbkey=misc_feature;gene=cspB
AL450380.1	EMBL	pseudogene	2552595	2552945	.	+	.	ID=gene-ML2148;Name=ML2148;gbkey=Gene;gene=ML2148;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2552595	2552945	.	+	0	ID=cds-ML2148;Parent=gene-ML2148;Note=Possible pseudogene of M. tuberculosis orthologue Rv0870c (Best blastx score 300);gbkey=CDS;gene=ML2148;product=unknown hydrophobic protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2553104	2554041	.	+	.	ID=gene-moaA2;Name=moaA2;gbkey=Gene;gene=moaA2;gene_biotype=pseudogene;gene_synonym=ML2149;pseudo=true
AL450380.1	EMBL	CDS	2553104	2554041	.	+	0	ID=cds-moaA2;Parent=gene-moaA2;Note=Possible pseudogene of M. tuberculosis orthologue moaA2 (Best blastx score 272);gbkey=CDS;gene=moaA2;product=molybdenum cofactor biosynthesis%2C protein A (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2554061	2554314	.	+	.	ID=gene-moaD2;Name=moaD2;gbkey=Gene;gene=moaD2;gene_biotype=pseudogene;gene_synonym=ML2150;pseudo=true
AL450380.1	EMBL	CDS	2554061	2554314	.	+	0	ID=cds-moaD2;Parent=gene-moaD2;Note=Possible pseudogene of M. tuberculosis orthologue moaD2 (Best blastx score 134);gbkey=CDS;gene=moaD2;product=molybdopterin converting factor subunit 1 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2554745	2555269	.	+	.	ID=gene-ML2151;Name=ML2151;gbkey=Gene;gene=ML2151;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2554745	2555269	.	+	0	ID=cds-CAC31106.1;Parent=gene-ML2151;Dbxref=InterPro:IPR010618,InterPro:IPR023346,UniProtKB/TrEMBL:Q7APY1,NCBI_GP:CAC31106.1;Name=CAC31106.1;Note=Similar to C-terminus of Mycobacterium tuberculosis hypothetical 40.0 kda protein TR:O53879 (EMBL:AL022004) fasta scores: E(): 4.8e-29%2C 63.0%25 in 200 aa. Contains N-terminal signal sequence.%3B~Similar to ML0240 and ML2030;gbkey=CDS;gene=ML2151;product=conserved hypothetical protein;protein_id=CAC31106.1;transl_table=11
AL450380.1	EMBL	pseudogene	2555416	2555744	.	-	.	ID=gene-moaE2;Name=moaE2;gbkey=Gene;gene=moaE2;gene_biotype=pseudogene;gene_synonym=ML2152;pseudo=true
AL450380.1	EMBL	CDS	2555416	2555744	.	-	0	ID=cds-moaE2;Parent=gene-moaE2;Note=Possible pseudogene of M. tuberculosis orthologue moaE2 (Best blastx score 146);gbkey=CDS;gene=moaE2;product=molybdopterin-converting factor subunit 2 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2555753	2556141	.	-	.	ID=gene-mog;Name=mog;gbkey=Gene;gene=mog;gene_biotype=pseudogene;gene_synonym=ML2153;pseudo=true
AL450380.1	EMBL	CDS	2555753	2556141	.	-	0	ID=cds-mog;Parent=gene-mog;Note=Possible pseudogene of M. tuberculosis orthologue mog (Best blastx score 218);gbkey=CDS;gene=mog;product=molybdopterin biosynthesis (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2556166	2556558	.	-	.	ID=gene-moaC2;Name=moaC2;gbkey=Gene;gene=moaC2;gene_biotype=pseudogene;gene_synonym=ML2154;pseudo=true
AL450380.1	EMBL	CDS	2556166	2556558	.	-	0	ID=cds-moaC2;Parent=gene-moaC2;Note=Possible pseudogene of M. tuberculosis orthologue moaC2 (Best blastx score 177);gbkey=CDS;gene=moaC2;product=molybdenum cofactor biosynthesis%2C protein C (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2556716	2556940	.	-	.	ID=gene-ML2155;Name=ML2155;gbkey=Gene;gene=ML2155;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2556716	2556940	.	-	0	ID=cds-CAC31110.1;Parent=gene-ML2155;Dbxref=UniProtKB/TrEMBL:Q9CBE2,NCBI_GP:CAC31110.1;Name=CAC31110.1;Note=Similar to C-terminus of Mycobacterium tuberculosis hypothetical 10.1 kda protein TR:O53875 (EMBL:AL022004) fasta scores: E(): 1.5e-21%2C 74.0%25 in 73 aa.;gbkey=CDS;gene=ML2155;product=conserved hypothetical protein;protein_id=CAC31110.1;transl_table=11
AL450380.1	EMBL	gene	2557038	2559299	.	+	.	ID=gene-ML2156;Name=ML2156;gbkey=Gene;gene=ML2156;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2557038	2559299	.	+	0	ID=cds-CAC31111.1;Parent=gene-ML2156;Dbxref=GOA:Q9CBE1,UniProtKB/TrEMBL:Q9CBE1,NCBI_GP:CAC31111.1;Name=CAC31111.1;Note=Similar to Mycobacterium tuberculosis hypothetical 79.7 kda protein TR:O53874 (EMBL:AL022004) fasta scores: E(): 0%2C 77.6%25 in 753 aa%2C and to Streptomyces coelicolor hypothetical 90.4 kda protein TR:CAB93395 (EMBL:AL357524) fasta scores: E(): 3.9e-27%2C 34.6%25 in 856 aa. Contains a probable helix-turn-helix motif at aa 277-298 (Score 1075%2C SD +2.85);gbkey=CDS;gene=ML2156;product=possible DNA-binding protein;protein_id=CAC31111.1;transl_table=11
AL450380.1	EMBL	gene	2559336	2560985	.	+	.	ID=gene-ML2157;Name=ML2157;gbkey=Gene;gene=ML2157;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2559336	2560985	.	+	0	ID=cds-CAC31112.1;Parent=gene-ML2157;Dbxref=GOA:Q9CBE0,InterPro:IPR001161,InterPro:IPR001650,InterPro:IPR006935,InterPro:IPR014001,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CBE0,NCBI_GP:CAC31112.1;Name=CAC31112.1;Note=Similar to Mycobacterium tuberculosis putative DNA helicase TR:O53873 (EMBL:AL022004) fasta scores: E(): 0%2C 91.1%25 in 542 aa%2C and to Saccharomyces cerevisiae DNA repair helicase RAD25 SW:RA25_YEAST (Q00578) fasta scores: E(): 0%2C 29.3%25 in 611 aa. Contains Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain.;gbkey=CDS;gene=ML2157;product=probable DNA helicase;protein_id=CAC31112.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2560602	2560835	.	+	.	ID=id-ML2157;Note=Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain%2C score 32.10%2C E-value 1.3e-05;gbkey=misc_feature;gene=ML2157
AL450380.1	EMBL	gene	2561097	2561489	.	-	.	ID=gene-ML2158;Name=ML2158;gbkey=Gene;gene=ML2158;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2561097	2561489	.	-	0	ID=cds-CAC31113.1;Parent=gene-ML2158;Dbxref=UniProtKB/TrEMBL:Q9CBD9,NCBI_GP:CAC31113.1;Name=CAC31113.1;Note=no database matches.;gbkey=CDS;gene=ML2158;product=hypothetical protein;protein_id=CAC31113.1;transl_table=11
AL450380.1	EMBL	pseudogene	2562932	2563627	.	-	.	ID=gene-ML2159;Name=ML2159;gbkey=Gene;gene=ML2159;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2562932	2563627	.	-	0	ID=cds-ML2159;Parent=gene-ML2159;Note=Possible pseudogene of M. tuberculosis paralog Rv0764c (Best blastx score 82). See also ML0447;gbkey=CDS;gene=ML2159;product=possible cytochrome P450 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2562936	2563675	.	+	.	ID=id-AL450380.1:2562936..2563675;Note=740 bp repeat%2C 100%25 identical to region 547230..547967;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2568743	2569062	.	+	.	ID=gene-ML2160;Name=ML2160;gbkey=Gene;gene=ML2160;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2568743	2569062	.	+	0	ID=cds-ML2160;Parent=gene-ML2160;Note=Possible pseudogene of M. tuberculosis paralog Rv1260 (Best blastx score 80);gbkey=CDS;gene=ML2160;product=probable oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2569161	2571305	.	-	.	ID=gene-fadB;Name=fadB;gbkey=Gene;gene=fadB;gene_biotype=protein_coding;gene_synonym=ML2161
AL450380.1	EMBL	CDS	2569161	2571305	.	-	0	ID=cds-CAC31116.1;Parent=gene-fadB;Dbxref=GOA:Q9CBD8,InterPro:IPR001753,InterPro:IPR006108,InterPro:IPR006176,InterPro:IPR008927,InterPro:IPR013328,InterPro:IPR016040,InterPro:IPR029045,UniProtKB/TrEMBL:Q9CBD8,NCBI_GP:CAC31116.1;Name=CAC31116.1;Note=Similar to Mycobacterium tuberculosis hypothetical 76.1 kda protein TR:O53872 (EMBL:AL022004) fasta scores: E(): 0%2C 88.6%25 in 719 aa%2C and to Escherichia coli fatty oxidation complex alpha subunit SW:FADB_ECOLI (P21177) fasta scores: E(): 0%2C 33.0%25 in 684 aa. Contains Pfam match to entry PF00725 3HCDH%2C 3-hydroxyacyl-CoA dehydrogenase. Contains Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family.%3B~Similar to ML1724%2C ML2402%2C ML2401%2C ML1241 and ML2118;gbkey=CDS;gene=fadB;product=putative fatty oxidation complex alpha subunit;protein_id=CAC31116.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2569500	2570339	.	-	.	ID=id-fadB;Note=Pfam match to entry PF00725 3HCDH%2C 3-hydroxyacyl-CoA dehydrogenase%2C score 297.50%2C E-value 1.7e-85;gbkey=misc_feature;gene=fadB
AL450380.1	EMBL	sequence_feature	2570730	2571260	.	-	.	ID=id-fadB-2;Note=Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family%2C score 142.40%2C E-value 7.8e-39;gbkey=misc_feature;gene=fadB
AL450380.1	EMBL	gene	2571310	2572521	.	-	.	ID=gene-fadA;Name=fadA;gbkey=Gene;gene=fadA;gene_biotype=protein_coding;gene_synonym=ML2162
AL450380.1	EMBL	CDS	2571310	2572521	.	-	0	ID=cds-CAC31117.1;Parent=gene-fadA;Dbxref=GOA:Q9CBD7,InterPro:IPR002155,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR020610,InterPro:IPR020613,InterPro:IPR020615,InterPro:IPR020616,InterPro:IPR020617,UniProtKB/TrEMBL:Q9CBD7,NCBI_GP:CAC31117.1;Name=CAC31117.1;Note=Similar to Mycobacterium tuberculosis putative beta-ketoadipyl CoA thiolase TR:O53871 (EMBL:AL022004) fasta scores: E(): 0%2C 94.5%25 in 403 aa%2C and to Escherichia coli acetyl-coa acetyltransferase TR:O53017 (EMBL:X97452) fasta scores: E(): 0%2C 44.1%25 in 422 aa%2C and to Acinetobacter calcoaceticus beta-ketoadipyl coa thiolase SW:PCAF_ACICA (Q43974) fasta scores: E(): 0%2C 40.9%25 in 425 aa. Contains Pfam match to entry PF00108 thiolase%2C Thiolase. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00098 Thiolases acyl-enzyme intermediate signature. Contains PS00099 Thiolases active site. Contains PS00737 Thiolases signature 2.%3B~Similar to ML1158 and ML2564;gbkey=CDS;gene=fadA;product=putative beta-ketoadipyl CoA thiolase;protein_id=CAC31117.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2571313	2572518	.	-	.	ID=id-fadA;Note=Pfam match to entry PF00108 thiolase%2C Thiolase%2C score 409.80%2C E-value 2.5e-119;gbkey=misc_feature;gene=fadA
AL450380.1	EMBL	sequence_feature	2571331	2571372	.	-	.	ID=id-fadA-2;Note=PS00099 Thiolases active site;gbkey=misc_feature;gene=fadA
AL450380.1	EMBL	sequence_feature	2571427	2571477	.	-	.	ID=id-fadA-3;Note=PS00737 Thiolases signature 2;gbkey=misc_feature;gene=fadA
AL450380.1	EMBL	sequence_feature	2571691	2571714	.	-	.	ID=id-fadA-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=fadA
AL450380.1	EMBL	sequence_feature	2572204	2572260	.	-	.	ID=id-fadA-5;Note=PS00098 Thiolases acyl-enzyme intermediate signature;gbkey=misc_feature;gene=fadA
AL450380.1	EMBL	pseudogene	2572726	2573757	.	+	.	ID=gene-ML2163;Name=ML2163;gbkey=Gene;gene=ML2163;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2572726	2573757	.	+	0	ID=cds-ML2163;Parent=gene-ML2163;Note=Possible pseudogene of M. tuberculosis orthologue Rv0858c (Best blastx score 361);gbkey=CDS;gene=ML2163;product=possible aminotransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2574005	2574268	.	-	.	ID=gene-ML2164;Name=ML2164;gbkey=Gene;gene=ML2164;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2574005	2574268	.	-	0	ID=cds-ML2164;Parent=gene-ML2164;Note=Possible pseudogene of M. tuberculosis orthologue Rv0857 (Best blastx score 152);gbkey=CDS;gene=ML2164;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2574454	2575448	.	-	.	ID=gene-far;Name=far;gbkey=Gene;gene=far;gene_biotype=pseudogene;gene_synonym=ML2165;pseudo=true
AL450380.1	EMBL	CDS	2574454	2575448	.	-	0	ID=cds-far;Parent=gene-far;Note=Possible pseudogene of M. tuberculosis orthologue far (Best blastx score 434);gbkey=CDS;gene=far;product=fatty acyl-CoA racemase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2575688	2575901	.	-	.	ID=gene-ML2166;Name=ML2166;gbkey=Gene;gene=ML2166;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2575688	2575901	.	-	0	ID=cds-ML2166;Parent=gene-ML2166;Note=Possible pseudogene of M. tuberculosis orthologue Rv0854);gbkey=CDS;gene=ML2166;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2575965	2577674	.	+	.	ID=gene-pdc;Name=pdc;gbkey=Gene;gene=pdc;gene_biotype=protein_coding;gene_synonym=ML2167
AL450380.1	EMBL	CDS	2575965	2577674	.	+	0	ID=cds-CAC31122.1;Parent=gene-pdc;Dbxref=GOA:Q9CBD6,InterPro:IPR011766,InterPro:IPR012000,InterPro:IPR012001,InterPro:IPR012110,InterPro:IPR029035,InterPro:IPR029061,NCBI_GP:CAC31122.1;Name=CAC31122.1;Note=Similar to Mycobacterium tuberculosis putative pyruvate/indole-pyruvate carboxylase TR:O53865 (EMBL:AL022004) fasta scores: E(): 0%2C 79.2%25 in 543 aa%2C and to Enterobacter cloacae indole-3-pyruvate decarboxylase SW:DCIP_ENTCL (P23234) fasta scores: E(): 0%2C 47.8%25 in 550 aa%2C and to Saccharomyces cerevisiae pyruvate decarboxylase isozyme 3 SW:DCP3_YEAST (P26263) fasta scores: E(): 0%2C 38.1%25 in 557 aa. Contains Pfam match to entry PF00205 TPP_enzymes%2C Thiamine pyrophosphate enzymes. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.%3B~Similar to ML1696 and ML2083;gbkey=CDS;gene=pdc;product=pyruvate (or indolepyruvate) decarboxylase;protein_id=CAC31122.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2576022	2577569	.	+	.	ID=id-pdc;Note=Pfam match to entry PF00205 TPP_enzymes%2C Thiamine pyrophosphate enzymes%2C score 351.90%2C E-value 8.6e-109;gbkey=misc_feature;gene=pdc
AL450380.1	EMBL	sequence_feature	2576385	2576417	.	+	.	ID=id-pdc-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=pdc
AL450380.1	EMBL	sequence_feature	2576697	2576720	.	+	.	ID=id-pdc-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=pdc
AL450380.1	EMBL	pseudogene	2577721	2578735	.	-	.	ID=gene-ML2168;Name=ML2168;gbkey=Gene;gene=ML2168;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2577721	2578735	.	-	0	ID=cds-ML2168;Parent=gene-ML2168;Note=Possible pseudogene of M. tuberculosis paralog fadD16 (Best blastx score 254);gbkey=CDS;gene=ML2168;product=acyl-CoA synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2578298	2578735	.	-	.	ID=gene-fadD3;Name=fadD3;gbkey=Gene;gene=fadD3;gene_biotype=pseudogene;gene_synonym=ML2169;pseudo=true
AL450380.1	EMBL	CDS	2578298	2578735	.	-	0	ID=cds-fadD3;Parent=gene-fadD3;Note=Possible pseudogene of M. tuberculosis orthologue fadD3 (Best blastx score 124);gbkey=CDS;gene=fadD3;product=acyl-CoA synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2579209	2579433	.	-	.	ID=gene-ML2170;Name=ML2170;gbkey=Gene;gene=ML2170;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2579209	2579433	.	-	0	ID=cds-CAC31125.1;Parent=gene-ML2170;Dbxref=UniProtKB/TrEMBL:Q9CBD5,NCBI_GP:CAC31125.1;Name=CAC31125.1;Note=no database matches.;gbkey=CDS;gene=ML2170;product=hypothetical protein;protein_id=CAC31125.1;transl_table=11
AL450380.1	EMBL	pseudogene	2581281	2582678	.	+	.	ID=gene-ML2171;Name=ML2171;gbkey=Gene;gene=ML2171;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2581281	2582678	.	+	0	ID=cds-ML2171;Parent=gene-ML2171;Note=Possible pseudogene of M. tuberculosis orthologue Rv0846c (Best blastx score 209);gbkey=CDS;gene=ML2171;product=similar to several L-ascorbate oxidases (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2583247	2583603	.	+	.	ID=gene-ML2172;Name=ML2172;gbkey=Gene;gene=ML2172;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2583247	2583603	.	+	0	ID=cds-CAC31127.1;Parent=gene-ML2172;Dbxref=UniProtKB/TrEMBL:Q9CBD4,NCBI_GP:CAC31127.1;Name=CAC31127.1;Note=no database matches.;gbkey=CDS;gene=ML2172;product=hypothetical protein;protein_id=CAC31127.1;transl_table=11
AL450380.1	EMBL	repeat_region	2583814	2583840	.	+	.	ID=id-AL450380.1:2583814..2583840;Note=9 copies of GTA triplet repeat;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2584381	2584584	.	+	.	ID=gene-ML2173;Name=ML2173;gbkey=Gene;gene=ML2173;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2584381	2584584	.	+	0	ID=cds-ML2173;Parent=gene-ML2173;gbkey=CDS;gene=ML2173;product=possible oxidoredutase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2586141	2586545	.	+	.	ID=gene-cdd;Name=cdd;gbkey=Gene;gene=cdd;gene_biotype=protein_coding;gene_synonym=ML2174
AL450380.1	EMBL	CDS	2586141	2586545	.	+	0	ID=cds-CAC31129.1;Parent=gene-cdd;Dbxref=GOA:Q9CBD3,InterPro:IPR002125,InterPro:IPR006262,InterPro:IPR016192,InterPro:IPR016193,UniProtKB/TrEMBL:Q9CBD3,NCBI_GP:CAC31129.1;Name=CAC31129.1;Note=Similar to Mycobacterium tuberculosis cytidine deaminase TR:O53367 (EMBL:AL021841) fasta scores: E(): 3e-28%2C 56.8%25 in 132 aa%2C and to Mus musculus cytidine deaminase SW:CDD_MOUSE (P56389) fasta scores: E(): 5.2e-12%2C 39.8%25 in 118 aa. Contains Pfam match to entry PF00383 dCMP_cyt_deam%2C Cytidine and deoxycytidylate deaminase zinc-binding region. Contains PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature.;gbkey=CDS;gene=cdd;product=cytidine deaminase;protein_id=CAC31129.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2586204	2586452	.	+	.	ID=id-cdd;Note=Pfam match to entry PF00383 dCMP_cyt_deam%2C Cytidine and deoxycytidylate deaminase zinc-binding region%2C score 62.30%2C E-value 1e-14;gbkey=misc_feature;gene=cdd
AL450380.1	EMBL	sequence_feature	2586306	2586428	.	+	.	ID=id-cdd-2;Note=PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature;gbkey=misc_feature;gene=cdd
AL450380.1	EMBL	pseudogene	2586577	2587000	.	+	.	ID=gene-ML2175;Name=ML2175;gbkey=Gene;gene=ML2175;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2586577	2587000	.	+	0	ID=cds-ML2175;Parent=gene-ML2175;Note=Possible pseudogene of M. tuberculosis orthologue Rv3728 (Best blastx score 74);gbkey=CDS;gene=ML2175;product=possible sugar transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2588187	2588444	.	+	.	ID=gene-ML2176;Name=ML2176;gbkey=Gene;gene=ML2176;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2588187	2588444	.	+	0	ID=cds-CAC31131.1;Parent=gene-ML2176;Dbxref=UniProtKB/TrEMBL:Q9CBD2,NCBI_GP:CAC31131.1;Name=CAC31131.1;Note=no database matches.;gbkey=CDS;gene=ML2176;product=hypothetical protein;protein_id=CAC31131.1;transl_table=11
AL450380.1	EMBL	gene	2588597	2589550	.	-	.	ID=gene-ML2177;Name=ML2177;gbkey=Gene;gene=ML2177;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2588597	2589550	.	-	0	ID=cds-CAC31132.1;Parent=gene-ML2177;Dbxref=GOA:Q9CBD1,InterPro:IPR000845,InterPro:IPR010059,InterPro:IPR018016,InterPro:IPR018017,UniProtKB/TrEMBL:Q9CBD1,NCBI_GP:CAC31132.1;Name=CAC31132.1;Note=Similar to Mus musculus uridine phosphorylase SW:UDP_MOUSE () fasta scores: E(): 1.9e-21%2C 34.0%25 in 268 aa%2C and to Homo sapiens uridine phosphorylase SW:UDP_HUMAN () fasta scores: E(): 2.2e-19%2C 32.4%25 in 275 aa. Contains PS01232 Purine and other phosphorylases family 1 signature.;gbkey=CDS;gene=ML2177;product=probable uridine phosphorylase;protein_id=CAC31132.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2589185	2589232	.	-	.	ID=id-ML2177;Note=PS01232 Purine and other phosphorylases family 1 signature;gbkey=misc_feature;gene=ML2177
AL450380.1	EMBL	gene	2589791	2590042	.	-	.	ID=gene-ML2178;Name=ML2178;gbkey=Gene;gene=ML2178;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2589791	2590042	.	-	0	ID=cds-CAC31133.1;Parent=gene-ML2178;Dbxref=UniProtKB/TrEMBL:Q9CBD0,NCBI_GP:CAC31133.1;Name=CAC31133.1;Note=no database matches.;gbkey=CDS;gene=ML2178;product=hypothetical protein;protein_id=CAC31133.1;transl_table=11
AL450380.1	EMBL	pseudogene	2590093	2590756	.	-	.	ID=gene-ML2179;Name=ML2179;gbkey=Gene;gene=ML2179;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2590093	2590756	.	-	0	ID=cds-ML2179;Parent=gene-ML2179;Note=Possible pseudogene of M. tuberculosis orthologue Rv2308 (Best blastx score 240);gbkey=CDS;gene=ML2179;product=putative transcriptional regulator (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2594578	2594654	.	-	.	ID=gene-pheU;Name=pheU;gbkey=Gene;gene=pheU;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	2594578	2594654	.	-	.	ID=rna-pheU;Parent=gene-pheU;Note=tRNA Phe anticodon GAA%2C Cove score 79.14;gbkey=tRNA;gene=pheU;product=tRNA-Phe
AL450380.1	EMBL	exon	2594578	2594654	.	-	.	ID=exon-pheU-1;Parent=rna-pheU;Note=tRNA Phe anticodon GAA%2C Cove score 79.14;gbkey=tRNA;gene=pheU;product=tRNA-Phe
AL450380.1	EMBL	gene	2594683	2594759	.	-	.	ID=gene-aspT;Name=aspT;gbkey=Gene;gene=aspT;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	2594683	2594759	.	-	.	ID=rna-aspT;Parent=gene-aspT;Note=tRNA Asp anticodon GTC%2C Cove score 87.88;gbkey=tRNA;gene=aspT;product=tRNA-Asp
AL450380.1	EMBL	exon	2594683	2594759	.	-	.	ID=exon-aspT-1;Parent=rna-aspT;Note=tRNA Asp anticodon GTC%2C Cove score 87.88;gbkey=tRNA;gene=aspT;product=tRNA-Asp
AL450380.1	EMBL	gene	2594790	2594862	.	-	.	ID=gene-gluT;Name=gluT;gbkey=Gene;gene=gluT;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	2594790	2594862	.	-	.	ID=rna-gluT;Parent=gene-gluT;Note=tRNA Glu anticodon TTC%2C Cove score 65.04;gbkey=tRNA;gene=gluT;product=tRNA-Glu
AL450380.1	EMBL	exon	2594790	2594862	.	-	.	ID=exon-gluT-1;Parent=rna-gluT;Note=tRNA Glu anticodon TTC%2C Cove score 65.04;gbkey=tRNA;gene=gluT;product=tRNA-Glu
AL450380.1	EMBL	gene	2594986	2595058	.	+	.	ID=gene-lysT;Name=lysT;gbkey=Gene;gene=lysT;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	2594986	2595058	.	+	.	ID=rna-lysT;Parent=gene-lysT;Note=tRNA Lys anticodon TTT%2C Cove score 79.95;gbkey=tRNA;gene=lysT;product=tRNA-Lys
AL450380.1	EMBL	exon	2594986	2595058	.	+	.	ID=exon-lysT-1;Parent=rna-lysT;Note=tRNA Lys anticodon TTT%2C Cove score 79.95;gbkey=tRNA;gene=lysT;product=tRNA-Lys
AL450380.1	EMBL	pseudogene	2595254	2595689	.	+	.	ID=gene-ML2180;Name=ML2180;gbkey=Gene;gene=ML2180;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2595254	2595689	.	+	0	ID=cds-ML2180;Parent=gene-ML2180;Note=Possible pseudogene of M. tuberculosis orthologue Rv0831c (Best blastx score 117);gbkey=CDS;gene=ML2180;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2595831	2596411	.	-	.	ID=gene-ML2181;Name=ML2181;gbkey=Gene;gene=ML2181;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2595831	2596411	.	-	0	ID=cds-ML2181;Parent=gene-ML2181;Note=Possible pseudogene of M. tuberculosis orthologue Rv0830;gbkey=CDS;gene=ML2181;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2596781	2597123	.	+	.	ID=gene-ML2182;Name=ML2182;gbkey=Gene;gene=ML2182;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2596781	2597123	.	+	0	ID=cds-ML2182;Parent=gene-ML2182;Note=Possible pseudogene of M. tuberculosis orthologue Rv0827c (Best blastx score 201);gbkey=CDS;gene=ML2182;product=transcriptional regulator (ArsR family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2597272	2598296	.	-	.	ID=gene-ML2183;Name=ML2183;gbkey=Gene;gene=ML2183;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2597272	2598296	.	-	0	ID=cds-ML2183;Parent=gene-ML2183;Note=Possible pseudogene of M. tuberculosis orthologue Rv0826 (Best blastx score 263);gbkey=CDS;gene=ML2183;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2597735	2597768	.	+	.	ID=id-AL450380.1:2597735..2597768;Note=17 copies of AT repeat;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2598370	2599017	.	+	.	ID=gene-ML2184;Name=ML2184;gbkey=Gene;gene=ML2184;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2598370	2599017	.	+	0	ID=cds-ML2184;Parent=gene-ML2184;Note=Possible pseudogene of M. tuberculosis orthologue Rv0825c (Best blastx score 227);gbkey=CDS;gene=ML2184;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2599216	2600232	.	+	.	ID=gene-desA1;Name=desA1;gbkey=Gene;gene=desA1;gene_biotype=protein_coding;gene_synonym=ML2185
AL450380.1	EMBL	CDS	2599216	2600232	.	+	0	ID=cds-CAC31140.1;Parent=gene-desA1;Dbxref=GOA:Q7APY0,InterPro:IPR005067,InterPro:IPR009078,InterPro:IPR012348,UniProtKB/TrEMBL:Q7APY0,NCBI_GP:CAC31140.1;Name=CAC31140.1;Note=Similar to Mycobacterium tuberculosis protein desA1 TR:Q50824 (EMBL:U49839) fasta scores: E(): 0%2C 79.9%25 in 338 aa%2C and to Oryza sativa acyl-[acyl-carrier protein] desaturase precursor SW:STAD_ORYSA (Q40731) fasta scores: E(): 2e-19%2C 28.3%25 in 300 aa.%3B~Similar to and ML1952;gbkey=CDS;gene=desA1;product=acyl-[ACP] desaturase;protein_id=CAC31140.1;transl_table=11
AL450380.1	EMBL	gene	2600276	2601430	.	+	.	ID=gene-ML2186;Name=ML2186;gbkey=Gene;gene=ML2186;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2600276	2601430	.	+	0	ID=cds-CAC31141.1;Parent=gene-ML2186;Dbxref=GOA:Q50049,InterPro:IPR001269,InterPro:IPR004652,InterPro:IPR013785,InterPro:IPR018517,InterPro:IPR024036,NCBI_GP:CAC31141.1;Name=CAC31141.1;Note=Similar to Mycobacterium tuberculosis hypothetical 41.4 kda protein rv0823c SW:Y823_MYCTU (O53835) fasta scores: E(): 0%2C 82.8%25 in 396 aa%2C and to Rhodobacter capsulatus nitrogen regulation protein NifR3 SW:NIR3_RHOCA (Q08111) fasta scores: E(): 2.6e-28%2C 34.0%25 in 332 aa. Contains Pfam match to entry PF01207 UPF0034%2C Uncharacterized protein family UPF0034. Contains PS01136 uncharacterized protein family UPF0034 signature.;gbkey=CDS;gene=ML2186;product=transcriptional regulator (NifR3/Smm1 family);protein_id=CAC31141.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2600276	2601313	.	+	.	ID=id-ML2186;Note=Pfam match to entry PF01207 UPF0034%2C Uncharacterized protein family UPF0034%2C score 518.10%2C E-value 6.4e-152;gbkey=misc_feature;gene=ML2186
AL450380.1	EMBL	sequence_feature	2600600	2600656	.	+	.	ID=id-ML2186-2;Note=PS01136 Uncharacterized protein family UPF0034 signature;gbkey=misc_feature;gene=ML2186
AL450380.1	EMBL	pseudogene	2602112	2603515	.	+	.	ID=gene-ML2187;Name=ML2187;gbkey=Gene;gene=ML2187;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2602112	2603515	.	+	0	ID=cds-ML2187;Parent=gene-ML2187;Note=Possible pseudogene of M. tuberculosis orthologue Rv0822c (Best blastx score 723);gbkey=CDS;gene=ML2187;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2603578	2604246	.	+	.	ID=gene-phoY1;Name=phoY1;gbkey=Gene;gene=phoY1;gene_biotype=protein_coding;gene_synonym=ML2188
AL450380.1	EMBL	CDS	2603578	2604246	.	+	0	ID=cds-CAC31143.1;Parent=gene-phoY1;Dbxref=GOA:Q50047,InterPro:IPR026022,InterPro:IPR028366,NCBI_GP:CAC31143.1;Name=CAC31143.1;Note=Similar to Mycobacterium tuberculosis phosphate transport system regulatory protein TR:O53833 (EMBL:AL022004) fasta scores: E(): 0%2C 93.0%25 in 213 aa%2C and to Rhizobium meliloti phosphate transport system regulatory protein SW:PHOU_RHIME (Q52989) fasta scores: E(): 1.5e-15%2C 30.1%25 in 216 aa.;gbkey=CDS;gene=phoY1;product=phosphate transport system regulator;protein_id=CAC31143.1;transl_table=11
AL450380.1	EMBL	gene	2604273	2605049	.	-	.	ID=gene-phoT;Name=phoT;gbkey=Gene;gene=phoT;gene_biotype=protein_coding;gene_synonym=ML2189
AL450380.1	EMBL	CDS	2604273	2605049	.	-	0	ID=cds-CAC31144.1;Parent=gene-phoT;Dbxref=GOA:Q50046,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR005670,InterPro:IPR015850,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAC31144.1;Name=CAC31144.1;Note=Similar to Mycobacterium tuberculosis phosphate transport system ATP-binding protein TR:O53832 (EMBL:AL022004) fasta scores: E(): 0%2C 91.5%25 in 258 aa%2C and to Escherichia coli phosphate transport ATP-binding protein pstb SW:PSTB_ECOLI (P07655) fasta scores: E(): 0%2C 52.9%25 in 255 aa. Contains Pfam match to entry PF00005 ABC_tran%2C ABC transporter. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00211 ABC transporters family signature.%3B~Similar to ML1892%2C ML1114%2C ML1113%2C ML1122%2C ML1089%2C ML1424%2C ML0336%2C ML2352%2C ML1726%2C ML0669%2C ML0590 and ML1816;gbkey=CDS;gene=phoT;product=phosphate transport system ABC transporter;protein_id=CAC31144.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2604381	2604962	.	-	.	ID=id-phoT;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 197.30%2C E-value 2.4e-55;gbkey=misc_feature;gene=phoT
AL450380.1	EMBL	sequence_feature	2604561	2604605	.	-	.	ID=id-phoT-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=phoT
AL450380.1	EMBL	sequence_feature	2604918	2604941	.	-	.	ID=id-phoT-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=phoT
AL450380.1	EMBL	pseudogene	2605129	2605749	.	-	.	ID=gene-pstA3;Name=pstA3;gbkey=Gene;gene=pstA3;gene_biotype=pseudogene;gene_synonym=ML2190;pseudo=true
AL450380.1	EMBL	CDS	2605129	2605749	.	-	0	ID=cds-pstA3;Parent=gene-pstA3;Note=Possible pseudogene of M. tuberculosis orthologue pstA2 (Best blastx score 279). Note M. tuberculosis does not have pstA3 gene;gbkey=CDS;gene=pstA3;product=PstA component of phosphate uptake (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2605942	2606698	.	-	.	ID=gene-pstC3;Name=pstC3;gbkey=Gene;gene=pstC3;gene_biotype=pseudogene;gene_synonym=ML2191;pseudo=true
AL450380.1	EMBL	CDS	2605942	2606698	.	-	0	ID=cds-pstC3;Parent=gene-pstC3;Note=Possible pseudogene of M. tuberculosis orthologue pstC3 (Best blastx score 327). Note M. tuberculosis does not have pstC3 at this location;gbkey=CDS;gene=pstC3;product=membrane-bound component of phosphate transport (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2606831	2608120	.	-	.	ID=gene-phoS3;Name=phoS3;gbkey=Gene;gene=phoS3;gene_biotype=protein_coding;gene_synonym=ML2192
AL450380.1	EMBL	CDS	2606831	2608120	.	-	0	ID=cds-CAC31147.1;Parent=gene-phoS3;Dbxref=GOA:Q50043,InterPro:IPR005673,InterPro:IPR006059,UniProtKB/TrEMBL:Q50043,NCBI_GP:CAC31147.1;Name=CAC31147.1;Note=Similar to Mycobacterium tuberculosis phosphate-binding protein 3 precursor TR:O86343 (EMBL:Z95209) fasta scores: E(): 0%2C 46.5%25 in 372 aa%2C and to Mycobacterium tuberculosis protein antigen B precursor SW:PAB_MYCTU (P15712%3B O05868) fasta scores: E(): 1.4e-24%2C 33.1%25 in 369 aa%2C and to Escherichia coli phosphate-binding periplasmic protein precursor SW:PSTS_ECOLI (P06128%3B P76744) fasta scores: E(): 1.3e-20%2C 27.9%25 in 344 aa. Contains Pfam match to entry PF01449 PstS%2C Phosphate-binding protein. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Note M. tuberculosis does not have phoS3 at this location%3B~Similar to ML2095;gbkey=CDS;gene=phoS3;product=phosphate-binding protein 3 precursor;protein_id=CAC31147.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2606939	2607802	.	-	.	ID=id-phoS3;Note=Pfam match to entry PF01449 PstS%2C Phosphate-binding protein%2C score 393.80%2C E-value 1.7e-114;gbkey=misc_feature;gene=phoS3
AL450380.1	EMBL	sequence_feature	2608043	2608075	.	-	.	ID=id-phoS3-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=phoS3
AL450380.1	EMBL	gene	2608113	2609048	.	-	.	ID=gene-ML2193;Name=ML2193;gbkey=Gene;gene=ML2193;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2608113	2609048	.	-	0	ID=cds-CAC31148.1;Parent=gene-ML2193;Dbxref=GOA:Q9CBC9,InterPro:IPR000182,InterPro:IPR016181,InterPro:IPR017813,NCBI_GP:CAC31148.1;Name=CAC31148.1;Note=Similar to Mycobacterium tuberculosis hypothetical 33.6 kda protein TR:O53831 (EMBL:AL022004) fasta scores: E(): 0%2C 75.2%25 in 314 aa. Contains Pfam match to entry PF00583 Acetyltransf%2C Acetyltransferase (GNAT) family.;gbkey=CDS;gene=ML2193;product=putative acetyltransferase;protein_id=CAC31148.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2608161	2608574	.	-	.	ID=id-ML2193;Note=Pfam match to entry PF00583 Acetyltransf%2C Acetyltransferase (GNAT) family%2C score 10.60%2C E-value 0.09;gbkey=misc_feature;gene=ML2193
AL450380.1	EMBL	pseudogene	2609051	2609818	.	-	.	ID=gene-ML2194;Name=ML2194;gbkey=Gene;gene=ML2194;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2609051	2609818	.	-	0	ID=cds-ML2194;Parent=gene-ML2194;Note=Possible pseudogene of M. tuberculosis orthologue Rv0818 (Best blastx score 209);gbkey=CDS;gene=ML2194;product=two-component response regulator (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2609965	2610816	.	+	.	ID=gene-ML2195;Name=ML2195;gbkey=Gene;gene=ML2195;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2609965	2610816	.	+	0	ID=cds-CAC31150.1;Parent=gene-ML2195;Dbxref=InterPro:IPR021373,UniProtKB/TrEMBL:Q7APX9,NCBI_GP:CAC31150.1;Name=CAC31150.1;Note=Similar to Mycobacterium tuberculosis hypothetical 28.6 kda protein TR:O53829 (EMBL:AL022004) fasta scores: E(): 0%2C 73.0%25 in 270 aa. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=ML2195;product=probable exported protein;protein_id=CAC31150.1;transl_table=11
AL450380.1	EMBL	gene	2610909	2611331	.	+	.	ID=gene-thiX;Name=thiX;gbkey=Gene;gene=thiX;gene_biotype=protein_coding;gene_synonym=ML2196
AL450380.1	EMBL	CDS	2610909	2611331	.	+	0	ID=cds-CAC31151.1;Parent=gene-thiX;Dbxref=GOA:Q9CBC8,InterPro:IPR005746,InterPro:IPR012336,InterPro:IPR013766,InterPro:IPR017937,UniProtKB/TrEMBL:Q9CBC8,NCBI_GP:CAC31151.1;Name=CAC31151.1;Note=Similar to Mycobacterium tuberculosis putative thioredoxin TR:O53828 (EMBL:AL022004) fasta scores: E(): 1.1e-30%2C 63.8%25 in 141 aa%2C and to Anacystis nidulans thioredoxin 1 SW:THI1_ANANI (P12243) fasta scores: E(): 9e-07%2C 37.6%25 in 93 aa. Contains PS00194 Thioredoxin family active site.%3B~Similar to and ML2703;gbkey=CDS;gene=thiX;product=thiredoxin;protein_id=CAC31151.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2611074	2611130	.	+	.	ID=id-thiX;Note=PS00194 Thioredoxin family active site;gbkey=misc_feature;gene=thiX
AL450380.1	EMBL	gene	2611544	2612029	.	+	.	ID=gene-ML2197;Name=ML2197;gbkey=Gene;gene=ML2197;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2611544	2612029	.	+	0	ID=cds-CAC31152.1;Parent=gene-ML2197;Dbxref=InterPro:IPR025508,UniProtKB/TrEMBL:Q7APX8,NCBI_GP:CAC31152.1;Name=CAC31152.1;Note=Similar to Saccharopolyspora erythraea hypothetical 16.0 kda protein TR:Q54082 (EMBL:M29612) fasta scores: E(): 4.9e-15%2C 43.9%25 in 139 aa. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2197;product=integral membrane protein;protein_id=CAC31152.1;transl_table=11
AL450380.1	EMBL	gene	2612061	2612894	.	+	.	ID=gene-cysA3;Name=cysA3;gbkey=Gene;gene=cysA3;gene_biotype=protein_coding;gene_synonym=ML2198
AL450380.1	EMBL	CDS	2612061	2612894	.	+	0	ID=cds-CAC31153.1;Parent=gene-cysA3;Dbxref=GOA:Q50036,InterPro:IPR001307,InterPro:IPR001763,NCBI_GP:CAC31153.1;Name=CAC31153.1;Note=Similar to Mycobacterium tuberculosis putative thiosulfate sulfurtransferase SW:THTR_MYCTU (O05793) fasta scores: E(): 0%2C 85.2%25 in 277 aa%2C and to Saccharopolyspora erythraea putative thiosulfate sulfurtransferase SW:THTR_SACER (P16385) fasta scores: E(): 0%2C 74.1%25 in 274 aa%2C and to Corynebacterium glutamicum thiosulfate sulfurtransferase SW:THTR_CORGL (P71121) fasta scores: E(): 0%2C 44.5%25 in 218 aa. Contains 2 Pfam matches to entry PF00581 Rhodanese%2C Rhodanese-like domain. Contains PS00683 Rhodanese C-terminal signature.%3B~Similar to and ML0728;gbkey=CDS;gene=cysA3;product=thiosulfate sulfurtransferase;protein_id=CAC31153.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2612085	2612417	.	+	.	ID=id-cysA3;Note=Pfam match to entry PF00581 Rhodanese%2C Rhodanese-like domain%2C score 77.30%2C E-value 3.2e-19;gbkey=misc_feature;gene=cysA3
AL450380.1	EMBL	sequence_feature	2612499	2612864	.	+	.	ID=id-cysA3-2;Note=Pfam match to entry PF00581 Rhodanese%2C Rhodanese-like domain%2C score 98.70%2C E-value 1.1e-25;gbkey=misc_feature;gene=cysA3
AL450380.1	EMBL	sequence_feature	2612823	2612855	.	+	.	ID=id-cysA3-3;Note=PS00683 Rhodanese C-terminal signature;gbkey=misc_feature;gene=cysA3
AL450380.1	EMBL	gene	2612896	2613198	.	+	.	ID=gene-ML2199;Name=ML2199;gbkey=Gene;gene=ML2199;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2612896	2613198	.	+	0	ID=cds-CAC31154.1;Parent=gene-ML2199;Dbxref=InterPro:IPR008969,InterPro:IPR010814,InterPro:IPR014766,UniProtKB/TrEMBL:Q9CBC7,NCBI_GP:CAC31154.1;Name=CAC31154.1;Note=Similar to Mycobacterium tuberculosis hypothetical 10.2 kda protein TR:O05794 (EMBL:Z95150) fasta scores: E(): 6.5e-33%2C 84.0%25 in 100 aa%2C and to Saccharopolyspora erythraea hypothetical 10.2 kda protein TR:Q54084 (EMBL:M29612) fasta scores: E(): 2.7e-16%2C 53.0%25 in 100 aa.;gbkey=CDS;gene=ML2199;product=conserved hypothetical protein;protein_id=CAC31154.1;transl_table=11
AL450380.1	EMBL	gene	2613457	2614143	.	+	.	ID=gene-ML2200;Name=ML2200;gbkey=Gene;gene=ML2200;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2613457	2614143	.	+	0	ID=cds-CAC31155.1;Parent=gene-ML2200;Dbxref=GOA:Q9CBC6,InterPro:IPR011038,InterPro:IPR014878,InterPro:IPR022939,NCBI_GP:CAC31155.1;Name=CAC31155.1;Note=Similar to Mycobacterium tuberculosis hypothetical 23.9 kda protein TR:O53827 (EMBL:AL022004) fasta scores: E(): 0%2C 78.9%25 in 223 aa%2C and to Streptomyces coelicolor hypothetical 21.7 kda protein TR:CAB94083 (EMBL:AL358692) fasta scores: E(): 4.4e-11%2C 30.5%25 in 167 aa.;gbkey=CDS;gene=ML2200;product=conserved hypothetical protein;protein_id=CAC31155.1;transl_table=11
AL450380.1	EMBL	gene	2615448	2615687	.	-	.	ID=gene-ML2201;Name=ML2201;gbkey=Gene;gene=ML2201;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2615448	2615687	.	-	0	ID=cds-CAC31156.1;Parent=gene-ML2201;Dbxref=UniProtKB/TrEMBL:Q9CBC5,NCBI_GP:CAC31156.1;Name=CAC31156.1;Note=no database matches.;gbkey=CDS;gene=ML2201;product=hypothetical protein;protein_id=CAC31156.1;transl_table=11
AL450380.1	EMBL	pseudogene	2616768	2617638	.	-	.	ID=gene-pabC;Name=pabC;gbkey=Gene;gene=pabC;gene_biotype=pseudogene;gene_synonym=ML2202;pseudo=true
AL450380.1	EMBL	CDS	2616768	2617638	.	-	0	ID=cds-pabC;Parent=gene-pabC;Note=Possible pseudogene of M. tuberculosis orthologue pabC (Best blastx score 299);gbkey=CDS;gene=pabC;product=aminodeoxychorismate lyase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2617849	2618970	.	+	.	ID=gene-ML2203;Name=ML2203;gbkey=Gene;gene=ML2203;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2617849	2618970	.	+	0	ID=cds-CAC31158.1;Parent=gene-ML2203;Dbxref=GOA:Q9CBC4,InterPro:IPR006222,InterPro:IPR013977,InterPro:IPR017703,UniProtKB/TrEMBL:Q9CBC4,NCBI_GP:CAC31158.1;Name=CAC31158.1;Note=Similar to Mycobacterium tuberculosis hypothetical 39.4 kda protein RV0811C TR:O53825 (EMBL:AL022004) fasta scores: E(): 0%2C 77.4%25 id in 367 aa%2C and to Corynebacterium ammoniagenes orf4 TR:Q9RHX9 (EMBL:AB003158) fasta scores: E(): 1.5e-13%2C 40.5%25 id in 373 aa.;gbkey=CDS;gene=ML2203;product=conserved hypothetical protein;protein_id=CAC31158.1;transl_table=11
AL450380.1	EMBL	gene	2619139	2619327	.	+	.	ID=gene-ML2204;Name=ML2204;gbkey=Gene;gene=ML2204;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2619139	2619327	.	+	0	ID=cds-CAC31159.1;Parent=gene-ML2204;Dbxref=InterPro:IPR021426,UniProtKB/TrEMBL:Q9CBC3,NCBI_GP:CAC31159.1;Name=CAC31159.1;Note=Similar to Mycobacterium tuberculosis hypothetical 6.9 kda protein RV0810C TR:O53824 (EMBL:AL022004) fasta scores: E(): 9.9e-17%2C 77.8%25 id in 63 aa%2C and to Streptomyces coelicolor hypothetical 9.3 kda protein SCD25.24C TR:Q9RKJ8 (EMBL:AL118514) fasta scores: E(): 1.3e-06%2C 46.8%25 id in 62 aa.;gbkey=CDS;gene=ML2204;product=conserved hypothetical protein;protein_id=CAC31159.1;transl_table=11
AL450380.1	EMBL	gene	2619421	2620515	.	-	.	ID=gene-purM;Name=purM;gbkey=Gene;gene=purM;gene_biotype=protein_coding;gene_synonym=ML2205
AL450380.1	EMBL	CDS	2619421	2620515	.	-	0	ID=cds-CAC31160.1;Parent=gene-purM;Dbxref=GOA:Q9CBC2,InterPro:IPR000728,InterPro:IPR004733,InterPro:IPR010918,InterPro:IPR016188,UniProtKB/TrEMBL:Q9CBC2,NCBI_GP:CAC31160.1;Name=CAC31160.1;Note=Similar to Mycobacterium tuberculosis 5'-phosphoribosyl-5-aminoimidazole synthetase RV0809 TR:O53823 (EMBL:AL022004) fasta scores: E(): 0%2C 87.1%25 id in 364 aa%2C and to Bacillus subtilis phosphoribosylformylglycinamidine cyclo-ligase PURM SW:PUR5_BACSU (P12043) fasta scores: E(): 0%2C 46.4%25 id in 334 aa. Contains Pfam match to entry PF00586 AIRS%2C AIR synthase related protein.;gbkey=CDS;gene=purM;product=5'-phosphoribosyl-5-aminoimidazole synthase;protein_id=CAC31160.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2619475	2620422	.	-	.	ID=id-purM;Note=Pfam match to entry PF00586 AIRS%2C AIR synthase related protein%2C score 391.30%2C E-value 9.3e-114;gbkey=misc_feature;gene=purM
AL450380.1	EMBL	gene	2620615	2622285	.	-	.	ID=gene-purF;Name=purF;gbkey=Gene;gene=purF;gene_biotype=protein_coding;gene_synonym=ML2206
AL450380.1	EMBL	CDS	2620615	2622285	.	-	0	ID=cds-CAC31161.1;Parent=gene-purF;Dbxref=GOA:Q50028,InterPro:IPR000836,InterPro:IPR005854,InterPro:IPR017932,InterPro:IPR029055,InterPro:IPR029057,NCBI_GP:CAC31161.1;Name=CAC31161.1;Note=Similar to Mycobacterium tuberculosis amidophosphoribosyltransferase precursor RV0808 SW:PUR1_MYCTU (O06626) fasta scores: E(): 0%2C 91.3%25 id in 518 aa%2C and to Bacillus subtilis amidophosphoribosyltransferase precursor PURF SW:PUR1_BACSU (P00497) fasta scores: E(): 0%2C 45.1%25 id in 470 aa. Contains 2 Pfam matches to entry PF00310 GATase_2%2C Glutamine amidotransferases class-II. Contains Pfam match to entry PF00156 Pribosyltran%2C Phosphoribosyl transferase domain. Contains PS00103 Purine/pyrimidine phosphoribosyl transferases signature.;gbkey=CDS;gene=purF;product=amidophosphoribosyltransferase;protein_id=CAC31161.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2620894	2621361	.	-	.	ID=id-purF;Note=Pfam match to entry PF00156 Pribosyltran%2C Phosphoribosyl transferase domain%2C score 22.90%2C E-value 0.00029;gbkey=misc_feature;gene=purF
AL450380.1	EMBL	sequence_feature	2621038	2621076	.	-	.	ID=id-purF-2;Note=PS00103 Purine/pyrimidine phosphoribosyl transferases signature;gbkey=misc_feature;gene=purF
AL450380.1	EMBL	sequence_feature	2621545	2621721	.	-	.	ID=id-purF-3;Note=Pfam match to entry PF00310 GATase_2%2C Glutamine amidotransferases class-II%2C score 34.80%2C E-value 3.1e-11;gbkey=misc_feature;gene=purF
AL450380.1	EMBL	sequence_feature	2621779	2622114	.	-	.	ID=id-purF-4;Note=Pfam match to entry PF00310 GATase_2%2C Glutamine amidotransferases class-II%2C score 99.70%2C E-value 2.2e-33;gbkey=misc_feature;gene=purF
AL450380.1	EMBL	gene	2622297	2622692	.	-	.	ID=gene-ML2207;Name=ML2207;gbkey=Gene;gene=ML2207;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2622297	2622692	.	-	0	ID=cds-CAC31162.1;Parent=gene-ML2207;Dbxref=UniProtKB/TrEMBL:Q7APX7,NCBI_GP:CAC31162.1;Name=CAC31162.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv0807 or MTCY07H7A.02C TR:O06627 (EMBL:Z95618) (129 aa) fasta scores: E(): 0%2C 73.4%25 id in 128 aa. Similar to Corynebacterium ammoniagenes ORF3 TR:Q9RHY2 (EMBL:AB003158) (132 aa) fasta scores: E(): 4.4e-22%2C 51.2%25 id in 125 aa and to Streptomyces coelicolor hypothetical protein SCD25.20 TR:Q9RKK0 (EMBL:AL118514) (202 aa) fasta scores: E(): 6.6e-16%2C 52.5%25 id in 101 aa. Previously sequenced as TR:O05761 (EMBL:Z95151).;gbkey=CDS;gene=ML2207;product=conserved hypothetical protein;protein_id=CAC31162.1;transl_table=11
AL450380.1	EMBL	pseudogene	2622745	2623859	.	+	.	ID=gene-mce1;Name=mce1;gbkey=Gene;gene=mce1;gene_biotype=pseudogene;gene_synonym=ML2208;pseudo=true
AL450380.1	EMBL	CDS	2622745	2623859	.	+	0	ID=cds-mce1;Parent=gene-mce1;Note=Possible pseudogene of M. tuberculosis orthologue mce1 (Best blastx score 226);gbkey=CDS;gene=mce1;product=cell invasion protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2624324	2625952	.	+	.	ID=gene-cpsY;Name=cpsY;gbkey=Gene;gene=cpsY;gene_biotype=protein_coding;gene_synonym=ML2209
AL450380.1	EMBL	CDS	2624324	2625952	.	+	0	ID=cds-CAC31164.1;Parent=gene-cpsY;Dbxref=GOA:Q50025,NCBI_GP:CAC31164.1;Name=CAC31164.1;Note=Similar to Mycobacterium tuberculosis hypothetical 60.3 kda protein RV0806C TR:O06628 (EMBL:Z95618) fasta scores: E(): 0%2C 82.3%25 id in 530 aa%2C and to Neisseria meningitidis capsule gene complex upd-glucose-4-epimerase TR:Q51151 (EMBL:L09188) fasta scores: E(): 9.2e-26%2C 30.0%25 id in 317 aa.;gbkey=CDS;gene=cpsY;product=probable UDP-glucose-4-epimerase;protein_id=CAC31164.1;transl_table=11
AL450380.1	EMBL	gene	2625867	2626820	.	-	.	ID=gene-ML2210;Name=ML2210;gbkey=Gene;gene=ML2210;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2625867	2626820	.	-	0	ID=cds-CAC31165.1;Parent=gene-ML2210;Dbxref=GOA:Q7APX5,InterPro:IPR004843,InterPro:IPR026575,InterPro:IPR029052,UniProtKB/TrEMBL:Q7APX5,NCBI_GP:CAC31165.1;Name=CAC31165.1;Note=Similar to Mycobacterium tuberculosis hypothetical 34.2 kDa protein RV0805 TR:O06629 (EMBL:Z95618) fasta scores: E(): 0%2C 82.5%25 id in 315 aa%2C and to Escherichia coli IcC protein ICC SW:ICC_ECOLI (P36650) fasta scores: E(): 1.2e-12%2C 30.7%25 id in 215 aa.;gbkey=CDS;gene=ML2210;product=conserved hypothetical protein;protein_id=CAC31165.1;transl_table=11
AL450380.1	EMBL	gene	2626953	2629217	.	-	.	ID=gene-purL;Name=purL;gbkey=Gene;gene=purL;gene_biotype=protein_coding;gene_synonym=ML2211
AL450380.1	EMBL	CDS	2626953	2629217	.	-	0	ID=cds-CAC31166.1;Parent=gene-purL;Dbxref=GOA:Q50023,InterPro:IPR000728,InterPro:IPR010074,InterPro:IPR010918,InterPro:IPR016188,NCBI_GP:CAC31166.1;Name=CAC31166.1;Note=Similar to Mycobacterium tuberculosis phosphoribosylformylglycinamidine synthase ii PURL OR RV0803 OR MTCY07H7A.06C SW:PURL_MYCTU (P54876%3B O06631) fasta scores: E(): 0%2C 90.3%25 id in 754 aa%2C and to Bacillus subtilis phosphoribosylformylglycinamidine synthase ii PURL SW:PURL_BACSU (P12042) fasta scores: E(): 0%2C 43.0%25 id in 739 aa. Contains 2 Pfam matches to entry PF00586 AIRS%2C AIR synthase related protein.;gbkey=CDS;gene=purL;product=phosphoribosylformylglycinamidine synthase II;protein_id=CAC31166.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2627049	2627921	.	-	.	ID=id-purL;Note=Pfam match to entry PF00586 AIRS%2C AIR synthase related protein%2C score 256.50%2C E-value 3.7e-73;gbkey=misc_feature;gene=purL
AL450380.1	EMBL	sequence_feature	2628138	2629031	.	-	.	ID=id-purL-2;Note=Pfam match to entry PF00586 AIRS%2C AIR synthase related protein%2C score 319.90%2C E-value 3.1e-92;gbkey=misc_feature;gene=purL
AL450380.1	EMBL	pseudogene	2629345	2629927	.	+	.	ID=gene-ML2212;Name=ML2212;gbkey=Gene;gene=ML2212;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2629345	2629927	.	+	0	ID=cds-ML2212;Parent=gene-ML2212;Note=Possible pseudogene of M. tuberculosis orthologue Rv0802c (Best blastx score 180);gbkey=CDS;gene=ML2212;product=acetyltransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2630069	2631400	.	-	.	ID=gene-pepC;Name=pepC;gbkey=Gene;gene=pepC;gene_biotype=protein_coding;gene_synonym=ML2213
AL450380.1	EMBL	CDS	2630069	2631400	.	-	0	ID=cds-CAC31168.1;Parent=gene-pepC;Dbxref=GOA:Q50022,InterPro:IPR001948,InterPro:IPR022984,InterPro:IPR023358,NCBI_GP:CAC31168.1;Name=CAC31168.1;Note=Similar to Mycobacterium tuberculosis hypothetical 46.0 kda protein RV0800 OR MTCY07H7A.09C TR:O06634 (EMBL:Z95618) fasta scores: E(): 0%2C 78.3%25 id in 433 aa%2C and to Saccharomyces cerevisiae vacuolar aminopeptidase I precursor ApE1 SW:AMPL_YEAST (P14904%3B P22060) fasta scores: E(): 5.7e-22%2C 31.5%25 id in 454 aa. Contains Pfam match to entry PF02127 Peptidase_M18%2C Aminopeptidase I zinc metalloprotease (M18).;gbkey=CDS;gene=pepC;product=aminopeptidase I;protein_id=CAC31168.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2630087	2631319	.	-	.	ID=id-pepC;Note=Pfam match to entry PF02127 Peptidase_M18%2C Aminopeptidase I zinc metalloprotease (M18)%2C score 831.10%2C E-value 3.9e-246;gbkey=misc_feature;gene=pepC
AL450380.1	EMBL	pseudogene	2631420	2632065	.	+	.	ID=gene-ML2214;Name=ML2214;gbkey=Gene;gene=ML2214;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2631420	2632065	.	+	0	ID=cds-ML2214;Parent=gene-ML2214;Note=Possible pseudogene of M. tuberculosis orthologue Rv0799c (Best blastx score 233);gbkey=CDS;gene=ML2214;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2632690	2633755	.	+	.	ID=gene-ML2215;Name=ML2215;gbkey=Gene;gene=ML2215;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2632690	2633755	.	+	0	ID=cds-ML2215;Parent=gene-ML2215;Note=Possible pseudogene of M. tuberculosis paralog Rv3627c (Best blastx score 258);gbkey=CDS;gene=ML2215;product=probable penicillin binding protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2634531	2634774	.	-	.	ID=gene-lpdB;Name=lpdB;gbkey=Gene;gene=lpdB;gene_biotype=pseudogene;gene_synonym=ML2216;pseudo=true
AL450380.1	EMBL	CDS	2634531	2634774	.	-	0	ID=cds-lpdB;Parent=gene-lpdB;Note=Possible pseudogene of M. tuberculosis orthologue lpdB (Best blastx score 153);gbkey=CDS;gene=lpdB;product=dihydrolipoamide dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2634754	2635286	.	+	.	ID=gene-ML2217;Name=ML2217;gbkey=Gene;gene=ML2217;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2634754	2635286	.	+	0	ID=cds-ML2217;Parent=gene-ML2217;Note=Possible pseudogene of M. tuberculosis orthologue Rv0790c (Best blastx score 295);gbkey=CDS;gene=ML2217;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2635354	2635928	.	+	.	ID=gene-ML2218;Name=ML2218;gbkey=Gene;gene=ML2218;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2635354	2635928	.	+	0	ID=cds-ML2218;Parent=gene-ML2218;Note=Possible pseudogene of M. tuberculosis orthologue Rv0789c (Best blastx score 122);gbkey=CDS;gene=ML2218;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2636005	2636679	.	-	.	ID=gene-purQ;Name=purQ;gbkey=Gene;gene=purQ;gene_biotype=protein_coding;gene_synonym=ML2219
AL450380.1	EMBL	CDS	2636005	2636679	.	-	0	ID=cds-CAC31174.1;Parent=gene-purQ;Dbxref=GOA:O05756,InterPro:IPR010075,InterPro:IPR017926,InterPro:IPR029062,NCBI_GP:CAC31174.1;Name=CAC31174.1;Note=Similar to Mycobacterium tuberculosis putative phosphoribosylformylglycinamidine synthase I RV0788 OR MTCY369.32 TR:P71841 (EMBL:Z80226) fasta scores: E(): 0%2C 88.7%25 id in 222 aa%2C and to Bacillus subtilis phosphoribosylformylglycinamidine synthase I PURQ SW:PURQ_BACSU (P12041) fasta scores: E(): 0%2C 47.2%25 id in 214 aa. Contains PS00442 Glutamine amidotransferases class-I active site.;gbkey=CDS;gene=purQ;product=phosphoribosylformylglycinamidine synthase I;protein_id=CAC31174.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2636401	2636436	.	-	.	ID=id-purQ;Note=PS00442 Glutamine amidotransferases class-I active site;gbkey=misc_feature;gene=purQ
AL450380.1	EMBL	gene	2636676	2636915	.	-	.	ID=gene-ML2219A;Name=ML2219A;gbkey=Gene;gene=ML2219A;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2636676	2636915	.	-	0	ID=cds-CAC31175.1;Parent=gene-ML2219A;Dbxref=GOA:O05755,InterPro:IPR003850,NCBI_GP:CAC31175.1;Name=CAC31175.1;Note=Unknown but orthologue of M. tuberculosis Rv0787A and same as M.leprae MLCB5.24. sp|O05755|Y524_MYCLE HYPOTHETICAL 8.6 KDA PROTEIN MLCB5.24 (79 aa) E(): 4.7e-2 8%3B 98.734%25 identity in 79 aa overlap. Similar to various hypothetical proteins e.g. Streptomyces coelicolor hypothetical protein SCD25.13 (AL118514);gbkey=CDS;gene=ML2219A;product=conserved hypothetical protein;protein_id=CAC31175.1;transl_table=11
AL450380.1	EMBL	pseudogene	2637052	2637289	.	-	.	ID=gene-ML2220;Name=ML2220;gbkey=Gene;gene=ML2220;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2637052	2637289	.	-	0	ID=cds-ML2220;Parent=gene-ML2220;Note=Possible pseudogene of M. tuberculosis orthologue Rv0787 (Best blastx score 111);gbkey=CDS;gene=ML2220;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2637327	2637716	.	+	.	ID=gene-ML2221;Name=ML2221;gbkey=Gene;gene=ML2221;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2637327	2637716	.	+	0	ID=cds-ML2221;Parent=gene-ML2221;Note=Possible pseudogene of M. tuberculosis orthologue Rv0786c (Best blastx score 194);gbkey=CDS;gene=ML2221;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2637785	2639300	.	-	.	ID=gene-ML2222;Name=ML2222;gbkey=Gene;gene=ML2222;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2637785	2639300	.	-	0	ID=cds-ML2222;Parent=gene-ML2222;Note=Possible pseudogene of M. tuberculosis orthologue Rv0785 (Best blastx score 559);gbkey=CDS;gene=ML2222;product=putative dehydrogenases (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2639383	2639930	.	-	.	ID=gene-ML2223;Name=ML2223;gbkey=Gene;gene=ML2223;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2639383	2639930	.	-	0	ID=cds-ML2223;Parent=gene-ML2223;Note=Possible pseudogene of M. tuberculosis orthologue Rv0784 (Best blastx score 251);gbkey=CDS;gene=ML2223;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2640230	2641772	.	+	.	ID=gene-ML2224;Name=ML2224;gbkey=Gene;gene=ML2224;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2640230	2641772	.	+	0	ID=cds-ML2224;Parent=gene-ML2224;Note=Possible pseudogene of M. tuberculosis orthologue Rv0783c (Best blastx score 460);gbkey=CDS;gene=ML2224;product=multidrug resistance protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2641910	2642161	.	-	.	ID=gene-ML2225;Name=ML2225;gbkey=Gene;gene=ML2225;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2641910	2642161	.	-	0	ID=cds-ML2225;Parent=gene-ML2225;Note=Similar to Deinococcus radiodurans transcriptional regulator%2C tetr family DR0720 TR:Q9RWE9 (EMBL:AE001928) fasta scores: E(): 1.8%2C 28.9%25 id in 83 aa;gbkey=CDS;gene=ML2225;product=transcriptional regulator%2C tetr family (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2642860	2645034	.	-	.	ID=gene-ptrB;Name=ptrB;gbkey=Gene;gene=ptrB;gene_biotype=protein_coding;gene_synonym=ML2226
AL450380.1	EMBL	CDS	2642860	2645034	.	-	0	ID=cds-CAC31182.1;Parent=gene-ptrB;Dbxref=GOA:Q7APX4,InterPro:IPR001375,InterPro:IPR002470,InterPro:IPR023302,InterPro:IPR029058,UniProtKB/TrEMBL:Q7APX4,NCBI_GP:CAC31182.1;Name=CAC31182.1;Note=Similar to Mycobacterium tuberculosis hypothetical 60.9 kda protein cy369.26 RV0782 OR MTCY369.26 TR:P71835 (EMBL:Z80226) fasta scores: E(): 0%2C 77.8%25 id in 519 aa%2C and to Escherichia coli protease ii PTRB OR TLP SW:PTRB_ECOLI (P24555%3B P78068) fasta scores: E(): 0%2C 38.2%25 id in 702 aa. Contains Pfam match to entry PF00326 Peptidase_S9%2C Prolyl oligopeptidase family.;gbkey=CDS;gene=ptrB;product=protease II;protein_id=CAC31182.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2643343	2643582	.	-	.	ID=id-ptrB;Note=Pfam match to entry PF00326 Peptidase_S9%2C Prolyl oligopeptidase family%2C score 93.20%2C E-value 1.5e-27;gbkey=misc_feature;gene=ptrB
AL450380.1	EMBL	gene	2645031	2645924	.	-	.	ID=gene-purC;Name=purC;gbkey=Gene;gene=purC;gene_biotype=protein_coding;gene_synonym=ML2227
AL450380.1	EMBL	CDS	2645031	2645924	.	-	0	ID=cds-CAC31183.1;Parent=gene-purC;Dbxref=GOA:O08361,InterPro:IPR001636,InterPro:IPR013816,InterPro:IPR018236,InterPro:IPR028923,NCBI_GP:CAC31183.1;Name=CAC31183.1;Note=Similar to Mycobacterium tuberculosis phosphoribosylaminoimidazole-succinocarboxamide synthase PURC OR RV0780 OR MTCY369.24 SW:PUR7_MYCTU (Q59566%3B P77904) fasta scores: E(): 0%2C 81.5%25 id in 297 aa%2C and to Haemophilus influenzae putative phosphoribosylaminoimidazole-succinocarboxamide synthase PURC OR HI1726 SW:PUR7_HAEIN (P43851) fasta scores: E(): 0%2C 46.0%25 id in 287 aa%2C and to Candida maltosa phosphoribosylamidoimidazole-succinocarboxamide synthase ADE1 SW:PUR7_CANMA (P27602) fasta scores: E(): 0%2C 45.1%25 id in 288 aa. Contains Pfam match to entry PF01259 SAICAR_synt%2C SAICAR synthetase. Contains PS01057 SAICAR synthetase signature 1. Contains PS01058 SAICAR synthetase signature 2.;gbkey=CDS;gene=purC;product=phosphoribosylaminoimidazole-succinocarboxamide;protein_id=CAC31183.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2645118	2645906	.	-	.	ID=id-purC;Note=Pfam match to entry PF01259 SAICAR_synt%2C SAICAR synthetase%2C score 535.90%2C E-value 2.7e-157;gbkey=misc_feature;gene=purC
AL450380.1	EMBL	sequence_feature	2645319	2645345	.	-	.	ID=id-purC-2;Note=PS01058 SAICAR synthetase signature 2;gbkey=misc_feature;gene=purC
AL450380.1	EMBL	sequence_feature	2645598	2645642	.	-	.	ID=id-purC-3;Note=PS01057 SAICAR synthetase signature 1;gbkey=misc_feature;gene=purC
AL450380.1	EMBL	gene	2645990	2646610	.	+	.	ID=gene-ML2228;Name=ML2228;gbkey=Gene;gene=ML2228;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2645990	2646610	.	+	0	ID=cds-CAC31184.1;Parent=gene-ML2228;Dbxref=UniProtKB/TrEMBL:Q7APX3,NCBI_GP:CAC31184.1;Name=CAC31184.1;Note=Similar to Mycobacterium tuberculosis hypothetical 21.6 kda protein cy369.23c precursor RV0779C OR MTCY369.23C TR:P71833 (EMBL:Z80226) fasta scores: E(): 0%2C 67.2%25 id in 204 aa.;gbkey=CDS;gene=ML2228;product=conserved hypothetical protein;protein_id=CAC31184.1;transl_table=11
AL450380.1	EMBL	pseudogene	2646614	2647483	.	-	.	ID=gene-ML2229;Name=ML2229;gbkey=Gene;gene=ML2229;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2646614	2647483	.	-	0	ID=cds-ML2229;Parent=gene-ML2229;Note=Possible pseudogene of M. tuberculosis orthologue Rv0778 (Best blastx score 305);gbkey=CDS;gene=ML2229;product=similar linalool 8-monooxygenase%2C cytochrome p-450 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2647523	2648941	.	-	.	ID=gene-purB;Name=purB;gbkey=Gene;gene=purB;gene_biotype=protein_coding;gene_synonym=ML2230
AL450380.1	EMBL	CDS	2647523	2648941	.	-	0	ID=cds-CAC31186.1;Parent=gene-purB;Dbxref=GOA:Q9CBC1,InterPro:IPR000362,InterPro:IPR004769,InterPro:IPR008948,InterPro:IPR019468,InterPro:IPR020557,InterPro:IPR022761,InterPro:IPR024083,UniProtKB/TrEMBL:Q9CBC1,NCBI_GP:CAC31186.1;Name=CAC31186.1;Note=Similar to Mycobacterium tuberculosis hypothetical 51.0 kda protein cy369.21b RV0777 OR MTCY369.21B TR:P71832 (EMBL:Z80226) fasta scores: E(): 0%2C 86.4%25 id in 472 aa%2C and to Saccharomyces cerevisiae adenylosuccinate lyase ADE13 OR YLR359W OR L8039.12 SW:PUR8_YEAST (Q05911) fasta scores: E(): 0%2C 34.5%25 id in 449 aa. Contains Pfam match to entry PF00206 lyase_1%2C Lyase. Contains PS00163 Fumarate lyases signature.;gbkey=CDS;gene=purB;product=adenylosuccinate lyase;protein_id=CAC31186.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2647670	2648743	.	-	.	ID=id-purB;Note=Pfam match to entry PF00206 lyase_1%2C Lyase%2C score 53.50%2C E-value 4e-14;gbkey=misc_feature;gene=purB
AL450380.1	EMBL	sequence_feature	2648087	2648116	.	-	.	ID=id-purB-2;Note=PS00163 Fumarate lyases signature;gbkey=misc_feature;gene=purB
AL450380.1	EMBL	pseudogene	2649020	2649785	.	+	.	ID=gene-ML2231;Name=ML2231;gbkey=Gene;gene=ML2231;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2649020	2649785	.	+	0	ID=cds-ML2231;Parent=gene-ML2231;Note=Possible pseudogene of M. tuberculosis orthologue Rv0776c (Best blastx score 364);gbkey=CDS;gene=ML2231;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2649925	2650550	.	-	.	ID=gene-ML2232;Name=ML2232;gbkey=Gene;gene=ML2232;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2649925	2650550	.	-	0	ID=cds-ML2232;Parent=gene-ML2232;Note=Possible pseudogene of M. tuberculosis orthologue Rv0775 (Best blastx score 161);gbkey=CDS;gene=ML2232;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2650586	2651505	.	+	.	ID=gene-ML2233;Name=ML2233;gbkey=Gene;gene=ML2233;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2650586	2651505	.	+	0	ID=cds-ML2233;Parent=gene-ML2233;Note=Possible pseudogene of M. tuberculosis orthologue Rv0774c (Best blastx score 391);gbkey=CDS;gene=ML2233;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2651727	2653206	.	+	.	ID=gene-ggtA;Name=ggtA;gbkey=Gene;gene=ggtA;gene_biotype=pseudogene;gene_synonym=ML2234;pseudo=true
AL450380.1	EMBL	CDS	2651727	2653206	.	+	0	ID=cds-ggtA;Parent=gene-ggtA;Note=Possible pseudogene of M. tuberculosis orthologue ggtA (Best blastx score 208);gbkey=CDS;gene=ggtA;product=putative [gamma]-glutamyl transpeptidase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2653337	2654605	.	-	.	ID=gene-purD;Name=purD;gbkey=Gene;gene=purD;gene_biotype=protein_coding;gene_synonym=ML2235
AL450380.1	EMBL	CDS	2653337	2654605	.	-	0	ID=cds-CAC31191.1;Parent=gene-purD;Dbxref=GOA:Q50144,InterPro:IPR000115,InterPro:IPR011054,InterPro:IPR011761,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,InterPro:IPR020559,InterPro:IPR020560,InterPro:IPR020561,InterPro:IPR020562,NCBI_GP:CAC31191.1;Name=CAC31191.1;Note=Similar to Mycobacterium tuberculosis phosphoribosylamine--glycine ligase PurD OR RV0772 OR MTCY369.17 SW:PUR2_MYCTU (P71827) fasta scores: E(): 0%2C 81.8%25 id in 418 aa%2C and to Salmonella typhimurium phosphoribosylamine--glycine ligase PurD SW:PUR2_SALTY (P26977) fasta scores: E(): 0%2C 43.2%25 id in 426 aa. Contains Pfam match to entry PF01071 GARS%2C Phosphoribosylglycinamide synthetase (GARS). Contains PS00184 Phosphoribosylglycinamide synthetase signature.;gbkey=CDS;gene=purD;product=phosphoribosylamine-glycine ligase;protein_id=CAC31191.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2653358	2654593	.	-	.	ID=id-purD;Note=Pfam match to entry PF01071 GARS%2C Phosphoribosylglycinamide synthetase (GARS)%2C score 799.80%2C E-value 1e-236;gbkey=misc_feature;gene=purD
AL450380.1	EMBL	sequence_feature	2653727	2653750	.	-	.	ID=id-purD-2;Note=PS00184 Phosphoribosylglycinamide synthetase signature;gbkey=misc_feature;gene=purD
AL450380.1	EMBL	repeat_region	2655600	2656352	.	-	.	ID=id-AL450380.1:2655600..2656352;Note=753 bp repeat%2C 100%25 identical to region 1293273..1294025;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2655602	2656356	.	+	.	ID=gene-ML2236;Name=ML2236;gbkey=Gene;gene=ML2236;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2655602	2656356	.	+	0	ID=cds-ML2236;Parent=gene-ML2236;Note=Possible pseudogene of M. tuberculosis paralog Rv0094c (Best blastx score 229);gbkey=CDS;gene=ML2236;product=REP13E12-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2656446	2656850	.	+	.	ID=gene-ML2237;Name=ML2237;gbkey=Gene;gene=ML2237;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2656446	2656850	.	+	0	ID=cds-CAC31193.1;Parent=gene-ML2237;Dbxref=GOA:P49774,InterPro:IPR001310,InterPro:IPR011146,InterPro:IPR019808,NCBI_GP:CAC31193.1;Name=CAC31193.1;Note=Similar to Mycobacterium leprae hypothetical 14.7 kda protein MLCB5.04C TR:Q9R734 (EMBL:Z95151) fasta scores: E(): 0%2C 100.0%25 id in 134 aa%2C and to Borrelia burgdorferi hypothetical 15.9 kda hit-like protein PKCI OR BB0379 SW:YHIT_BORBU (P94252) fasta scores: E(): 5.2e-11%2C 42.3%25 id in 111 aa. Contains Pfam match to entry PF01230 HIT%2C HIT family. Contains PS00892 HIT family signature.;gbkey=CDS;gene=ML2237;product=conserved hypothetical protein (HIT family);protein_id=CAC31193.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2656452	2656742	.	+	.	ID=id-ML2237;Note=Pfam match to entry PF01230 HIT%2C HIT family%2C score 156.50%2C E-value 4.6e-43;gbkey=misc_feature;gene=ML2237
AL450380.1	EMBL	sequence_feature	2656683	2656739	.	+	.	ID=id-ML2237-2;Note=PS00892 HIT family signature;gbkey=misc_feature;gene=ML2237
AL450380.1	EMBL	pseudogene	2656929	2658271	.	-	.	ID=gene-phoR;Name=phoR;gbkey=Gene;gene=phoR;gene_biotype=pseudogene;gene_synonym=ML2238;pseudo=true
AL450380.1	EMBL	CDS	2656929	2658271	.	-	0	ID=cds-phoR;Parent=gene-phoR;Note=Possible pseudogene of M. tuberculosis orthologue phoR (Best blastx score 378);gbkey=CDS;gene=phoR;product=sensor histidine kinase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2658338	2659044	.	-	.	ID=gene-phoP;Name=phoP;gbkey=Gene;gene=phoP;gene_biotype=pseudogene;gene_synonym=ML2239;pseudo=true
AL450380.1	EMBL	CDS	2658338	2659044	.	-	0	ID=cds-phoP;Parent=gene-phoP;Note=Possible pseudogene of M. tuberculosis orthologue phoP (Best blastx score 386);gbkey=CDS;gene=phoP;product=two-component response regulator (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2659226	2659660	.	+	.	ID=gene-ML2240;Name=ML2240;gbkey=Gene;gene=ML2240;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2659226	2659660	.	+	0	ID=cds-ML2240;Parent=gene-ML2240;Note=Possible pseudogene of M. tuberculosis orthologue Rv0756c (Best blastx score 180);gbkey=CDS;gene=ML2240;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2659692	2659766	.	+	.	ID=gene-thrV;Name=thrV;gbkey=Gene;gene=thrV;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	2659692	2659766	.	+	.	ID=rna-thrV;Parent=gene-thrV;Note=tRNA Thr anticodon TGT%2C Cove score 85.47;gbkey=tRNA;gene=thrV;product=tRNA-Thr
AL450380.1	EMBL	exon	2659692	2659766	.	+	.	ID=exon-thrV-1;Parent=rna-thrV;Note=tRNA Thr anticodon TGT%2C Cove score 85.47;gbkey=tRNA;gene=thrV;product=tRNA-Thr
AL450380.1	EMBL	pseudogene	2659802	2660837	.	-	.	ID=gene-PE_PGRS-4;Name=PE_PGRS;gbkey=Gene;gene=PE_PGRS;gene_biotype=pseudogene;gene_synonym=ML2241;pseudo=true
AL450380.1	EMBL	CDS	2659802	2660837	.	-	0	ID=cds-PE_PGRS-4;Parent=gene-PE_PGRS-4;Note=Possible pseudogene of M. tuberculosis orthologue PE_PGRS (Best blastx score 185);gbkey=CDS;gene=PE_PGRS;product=PE_PGRS-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2661044	2661775	.	-	.	ID=gene-ML2242;Name=ML2242;gbkey=Gene;gene=ML2242;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2661044	2661775	.	-	0	ID=cds-CAC31198.1;Parent=gene-ML2242;Dbxref=GOA:Q7APX2,InterPro:IPR009003,UniProtKB/TrEMBL:Q7APX2,NCBI_GP:CAC31198.1;Name=CAC31198.1;Note=Similar to Mycobacterium fortuitum plasmid pAL5000 hypothetical 26.6 kda protein TR:Q52145 (EMBL:M23557) fasta scores: E(): 9.9e-05%2C 27.2%25 id in 250 aa.;gbkey=CDS;gene=ML2242;product=conserved hypothetical protein;protein_id=CAC31198.1;transl_table=11
AL450380.1	EMBL	pseudogene	2666707	2666994	.	-	.	ID=gene-ML2243;Name=ML2243;gbkey=Gene;gene=ML2243;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2666707	2666994	.	-	0	ID=cds-ML2243;Parent=gene-ML2243;Note=Similar to Mycobacterium tuberculosis hypothetical PPE-family protein rv3425 RV3425 OR MTCY78.04C SW:YY25_MYCTU (Q50703) fasta scores: E(): 1.3%2C 30.7%25 id in 101 aa;gbkey=CDS;gene=ML2243;product=PPE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2667223	2667564	.	-	.	ID=gene-ML2244;Name=ML2244;gbkey=Gene;gene=ML2244;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2667223	2667564	.	-	0	ID=cds-CAC31200.1;Parent=gene-ML2244;Dbxref=UniProtKB/TrEMBL:Q9CBC0,NCBI_GP:CAC31200.1;Name=CAC31200.1;Note=no database matches.;gbkey=CDS;gene=ML2244;product=hypothetical protein;protein_id=CAC31200.1;transl_table=11
AL450380.1	EMBL	pseudogene	2667790	2668383	.	-	.	ID=gene-ML2245;Name=ML2245;gbkey=Gene;gene=ML2245;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2667790	2668383	.	-	0	ID=cds-ML2245;Parent=gene-ML2245;Note=Similar to Streptomyces sp sarcosine oxidase SW:SAOX_STRSQ (P40854) fasta scores: E(): 4e-14%2C 34.8%25 id in 204 aa;gbkey=CDS;gene=ML2245;product=sarcosine oxidase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2669332	2670002	.	-	.	ID=gene-ML2246;Name=ML2246;gbkey=Gene;gene=ML2246;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2669332	2670002	.	-	0	ID=cds-ML2246;Parent=gene-ML2246;Note=Possible pseudogene of M. tuberculosis orthologue Rv3482c (Best blastx score 128);gbkey=CDS;gene=ML2246;product=unknown membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2670322	2671872	.	+	.	ID=gene-cpsA;Name=cpsA;gbkey=Gene;gene=cpsA;gene_biotype=protein_coding;gene_synonym=ML2247
AL450380.1	EMBL	CDS	2670322	2671872	.	+	0	ID=cds-CAC31203.1;Parent=gene-cpsA;Dbxref=InterPro:IPR004474,InterPro:IPR027381,UniProtKB/TrEMBL:Q7APX1,NCBI_GP:CAC31203.1;Name=CAC31203.1;Note=Similar to Mycobacterium tuberculosis cpsa CPSA OR RV3484 OR MTCY13E12.37 TR:O06347 (EMBL:Z95390) fasta scores: E(): 0%2C 74.9%25 id in 518 aa%2C and to Streptococcus agalactiae cpsx protein CPSX TR:Q9S2Z3 (EMBL:Y17241) fasta scores: E(): 1.9e-09%2C 26.0%25 id in 254 aa%2C and to Streptomyces coelicolor putative transcriptional regulator SC6G4.33 TR:O86796 (EMBL:AL031317) fasta scores: E(): 4.6e-09%2C 27.2%25 id in 327 aa.;gbkey=CDS;gene=cpsA;product=conserved hypothetical protein;protein_id=CAC31203.1;transl_table=11
AL450380.1	EMBL	pseudogene	2672137	2672685	.	-	.	ID=gene-ML2248;Name=ML2248;gbkey=Gene;gene=ML2248;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2672137	2672685	.	-	0	ID=cds-ML2248;Parent=gene-ML2248;Note=Possible pseudogene of M. tuberculosis paralog Rv1543 (Best blastx score 301);gbkey=CDS;gene=ML2248;product=probable fatty-acyl CoA reductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2672720	2673037	.	-	.	ID=gene-ML2249;Name=ML2249;gbkey=Gene;gene=ML2249;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2672720	2673037	.	-	0	ID=cds-CAC31205.1;Parent=gene-ML2249;Dbxref=UniProtKB/TrEMBL:Q9CBB9,NCBI_GP:CAC31205.1;Name=CAC31205.1;Note=no database matches.;gbkey=CDS;gene=ML2249;product=hypothetical protein;protein_id=CAC31205.1;transl_table=11
AL450380.1	EMBL	pseudogene	2673649	2674425	.	-	.	ID=gene-ML2250;Name=ML2250;gbkey=Gene;gene=ML2250;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2673649	2674425	.	-	0	ID=cds-ML2250;Parent=gene-ML2250;Note=Possible pseudogene of M. tuberculosis orthologue Rv3485c (Best blastx score 284);gbkey=CDS;gene=ML2250;product=short-chain alcohol dehydrogenase family (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2674574	2675342	.	-	.	ID=gene-echA13;Name=echA13;gbkey=Gene;gene=echA13;gene_biotype=pseudogene;gene_synonym=ML2251;pseudo=true
AL450380.1	EMBL	CDS	2674574	2675342	.	-	0	ID=cds-echA13;Parent=gene-echA13;Note=Possible pseudogene of M. tuberculosis paralog echA13 (Best blastx score 169);gbkey=CDS;gene=echA13;product=enoyl-CoA hydratase/isomerase superfamily (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2675767	2676003	.	-	.	ID=gene-ML2252;Name=ML2252;gbkey=Gene;gene=ML2252;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2675767	2676003	.	-	0	ID=cds-CAC31208.1;Parent=gene-ML2252;Dbxref=UniProtKB/TrEMBL:Q7APX0,NCBI_GP:CAC31208.1;Name=CAC31208.1;Note=no database matches.;gbkey=CDS;gene=ML2252;product=hypothetical protein;protein_id=CAC31208.1;transl_table=11
AL450380.1	EMBL	gene	2676319	2676534	.	-	.	ID=gene-ML2253;Name=ML2253;gbkey=Gene;gene=ML2253;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2676319	2676534	.	-	0	ID=cds-CAC31209.1;Parent=gene-ML2253;Dbxref=UniProtKB/TrEMBL:Q7APW9,NCBI_GP:CAC31209.1;Name=CAC31209.1;Note=Similar to Mycobacterium tuberculosis antigen 84 AG84 OR WAG31 OR RV2145C OR MTCY270.23 SW:AG84_MYCTU (P46816) fasta scores: E(): 2.2e-05%2C 50.0%25 id in 54 aa%2C and to Mycobacterium leprae antigen 84 AG84 SW:AG84_MYCLE (P46815) fasta scores: E(): 5.4e-05%2C 48.1%25 id in 54 aa.;gbkey=CDS;gene=ML2253;product=antigen 84 homolog;protein_id=CAC31209.1;transl_table=11
AL450380.1	EMBL	gene	2677263	2678759	.	+	.	ID=gene-otsA;Name=otsA;gbkey=Gene;gene=otsA;gene_biotype=protein_coding;gene_synonym=ML2254
AL450380.1	EMBL	CDS	2677263	2678759	.	+	0	ID=cds-CAC31210.1;Parent=gene-otsA;Dbxref=GOA:Q50167,InterPro:IPR001830,NCBI_GP:CAC31210.1;Name=CAC31210.1;Note=Similar to Mycobacterium tuberculosis otsA or Rv3490 or MTCY13E12.43 TR:O06353 (EMBL:Z95390) (500 aa) fasta scores: E(): 0%2C 80.3%25 id in 497 aa. Similar to Candida albicans alpha%2Calpha-trehalose-phosphate synthase [UDP-forming] tps1 SW:TPS1_CANAL (Q92410) (478 aa) fasta scores: E(): 0%2C 37.8%25 id in 473 aa. Previously sequenced as TR:Q50167 (EMBL:U15187). Contains Pfam match to entry PF00982 TrehaloseP_syn%2C Trehalose-6-phosphate synthase domain.;gbkey=CDS;gene=otsA;product=probable trehalose-phosphate synthase;protein_id=CAC31210.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2677320	2678735	.	+	.	ID=id-otsA;Note=Pfam match to entry PF00982 TrehaloseP_syn%2C Trehalose-6-phosphate synthase domain%2C score 771.20%2C E-value 4.1e-228;gbkey=misc_feature;gene=otsA
AL450380.1	EMBL	pseudogene	2678863	2679422	.	+	.	ID=gene-ML2255;Name=ML2255;gbkey=Gene;gene=ML2255;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2678863	2679422	.	+	0	ID=cds-ML2255;Parent=gene-ML2255;Note=Possible pseudogene of M. tuberculosis orthologue Rv3491 (Best blastx score 304);gbkey=CDS;gene=ML2255;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2679462	2680308	.	-	.	ID=id-AL450380.1:2679462..2680308;Note=Dispersed repeat%2C RLEP%2C copy 34;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2680324	2681321	.	-	.	ID=gene-ML2256;Name=ML2256;gbkey=Gene;gene=ML2256;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2680324	2681321	.	-	0	ID=cds-ML2256;Parent=gene-ML2256;Note=Possible pseudogene of M. tuberculosis orthologue Rv0541c (Best blastx score 212);gbkey=CDS;gene=ML2256;product=unknown membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2681377	2682483	.	-	.	ID=gene-menE;Name=menE;gbkey=Gene;gene=menE;gene_biotype=protein_coding;gene_synonym=ML2257
AL450380.1	EMBL	CDS	2681377	2682483	.	-	0	ID=cds-CAC31213.1;Parent=gene-menE;Dbxref=GOA:Q9CBB8,InterPro:IPR000873,InterPro:IPR020845,InterPro:IPR025110,UniProtKB/TrEMBL:Q9CBB8,NCBI_GP:CAC31213.1;Name=CAC31213.1;Note=Similar to Mycobacterium tuberculosis MenE or RV0542C or MTCY25D10.21C TR:O06408 (EMBL:Z95558) fasta scores: E(): 0%2C 78.3%25 id in 359 aa%2C and to Escherichia coli o-succinylbenzoic acid--coa ligase MENE SW:MENE_ECOLI (P37353%3B P78253%3B P78178) fasta scores: E(): 7e-18%2C 30.0%25 id in 377 aa. Contains Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme. Contains PS00455 Putative AMP-binding domain signature.;gbkey=CDS;gene=menE;product=o-succinylbenzoic acid-CoA ligase;protein_id=CAC31213.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2681602	2682483	.	-	.	ID=id-menE;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score -134.30%2C E-value 6.3e-08;gbkey=misc_feature;gene=menE
AL450380.1	EMBL	sequence_feature	2682313	2682348	.	-	.	ID=id-menE-2;Note=PS00455 Putative AMP-binding domain signature;gbkey=misc_feature;gene=menE
AL450380.1	EMBL	gene	2682528	2682830	.	-	.	ID=gene-ML2258;Name=ML2258;gbkey=Gene;gene=ML2258;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2682528	2682830	.	-	0	ID=cds-CAC31214.1;Parent=gene-ML2258;Dbxref=InterPro:IPR021784,UniProtKB/TrEMBL:Q7APW7,NCBI_GP:CAC31214.1;Name=CAC31214.1;Note=Similar to Mycobacterium tuberculosis hypothetical 11.3 kda protein RV0543C OR MTCY25D10.22C TR:O06409 (EMBL:Z95558) fasta scores: E(): 1.4e-27%2C 73.5%25 id in 98 aa%2C and to Mycobacterium tuberculosis hypothetical 13.4 kda protein RV3046C OR MTV012.61C TR:O53292 (EMBL:AL021287) fasta scores: E(): 6.8e-07%2C 35.9%25 id in 103 aa.;gbkey=CDS;gene=ML2258;product=conserved hypothetical protein;protein_id=CAC31214.1;transl_table=11
AL450380.1	EMBL	gene	2682860	2683150	.	-	.	ID=gene-ML2259;Name=ML2259;gbkey=Gene;gene=ML2259;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2682860	2683150	.	-	0	ID=cds-CAC31215.1;Parent=gene-ML2259;Dbxref=UniProtKB/TrEMBL:Q9CBB7,NCBI_GP:CAC31215.1;Name=CAC31215.1;Note=Similar to Mycobacterium tuberculosis hypothetical 9.7 kda protein RV0544C OR MTCY25D10.23C TR:O06410 (EMBL:Z95558) fasta scores: E(): 3.3e-22%2C 64.6%25 id in 96 aa. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2259;product=possible membrane protein;protein_id=CAC31215.1;transl_table=11
AL450380.1	EMBL	gene	2683147	2684391	.	-	.	ID=gene-pitA;Name=pitA;gbkey=Gene;gene=pitA;gene_biotype=protein_coding;gene_synonym=ML2260
AL450380.1	EMBL	CDS	2683147	2684391	.	-	0	ID=cds-CAC31216.1;Parent=gene-pitA;Dbxref=GOA:Q50173,InterPro:IPR001204,NCBI_GP:CAC31216.1;Name=CAC31216.1;Note=Similar to Mycobacterium tuberculosis probable low-affinity inorganic phosphate transporter PIT OR PITA OR RV0545C OR MTCY25D10.24C SW:PIT_MYCTU (O06411) fasta scores: E(): 0%2C 76.3%25 id in 418 aa%2C and to Bacillus subtilis probable low-affinity inorganic phosphate transporter PIT SW:PIT_BACSU (O34436) fasta scores: E(): 0%2C 43.9%25 id in 312 aa. Contains Pfam match to entry PF01384 PHO4%2C Phosphate transporter family. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=pitA;product=low-affinity inorganic phosphate transporter;protein_id=CAC31216.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2683426	2684328	.	-	.	ID=id-pitA;Note=Pfam match to entry PF01384 PHO4%2C Phosphate transporter family%2C score 90.40%2C E-value 3.6e-23;gbkey=misc_feature;gene=pitA
AL450380.1	EMBL	gene	2684489	2684905	.	-	.	ID=gene-ML2261;Name=ML2261;gbkey=Gene;gene=ML2261;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2684489	2684905	.	-	0	ID=cds-CAC31217.1;Parent=gene-ML2261;Dbxref=InterPro:IPR025870,InterPro:IPR029068,UniProtKB/TrEMBL:Q9CBB6,NCBI_GP:CAC31217.1;Name=CAC31217.1;Note=Similar to Mycobacterium tuberculosis hypothetical 14.3 kda protein RV0546C OR MTCY25D10.25C TR:O06412 (EMBL:Z95558) fasta scores: E(): 0%2C 84.7%25 id in 131 aa. Also some similarity to Haemophilus influenzae lactoylglutathione lyase GLOA OR HI0323 SW:LGUL_HAEIN (P44638) fasta scores: E(): 0.084%2C 29.1%25 id in 127 aa.;gbkey=CDS;gene=ML2261;product=conserved hypothetical protein;protein_id=CAC31217.1;transl_table=11
AL450380.1	EMBL	pseudogene	2685653	2686466	.	-	.	ID=gene-ML2262;Name=ML2262;gbkey=Gene;gene=ML2262;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2685653	2686466	.	-	0	ID=cds-ML2262;Parent=gene-ML2262;Note=Possible pseudogene of M. tuberculosis orthologue Rv0547c (Best blastx score 587);gbkey=CDS;gene=ML2262;product=putative oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2686559	2687461	.	-	.	ID=gene-menB;Name=menB;gbkey=Gene;gene=menB;gene_biotype=protein_coding;gene_synonym=ML2263
AL450380.1	EMBL	CDS	2686559	2687461	.	-	0	ID=cds-CAC31219.1;Parent=gene-menB;Dbxref=GOA:Q9CBB5,InterPro:IPR001753,InterPro:IPR010198,InterPro:IPR014748,InterPro:IPR029045,UniProtKB/TrEMBL:Q9CBB5,NCBI_GP:CAC31219.1;Name=CAC31219.1;Note=Similar to Mycobacterium tuberculosis MenB or RV0548C or MTCY25D10.27C TR:O06414 (EMBL:Z95558) fasta scores: E(): 0%2C 91.9%25 id in 308 aa%2C and to Bacillus subtilis naphthoate synthase MENB SW:MENB_BACSU (P23966) fasta scores: E(): 0%2C 50.4%25 id in 270 aa. Contains Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family.;gbkey=CDS;gene=menB;product=naphthoate synthase;protein_id=CAC31219.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2686799	2687362	.	-	.	ID=id-menB;Note=Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family%2C score 128.40%2C E-value 1.3e-34;gbkey=misc_feature;gene=menB
AL450380.1	EMBL	gene	2687458	2688069	.	-	.	ID=gene-ML2264;Name=ML2264;gbkey=Gene;gene=ML2264;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2687458	2688069	.	-	0	ID=cds-CAC31220.1;Parent=gene-ML2264;Dbxref=UniProtKB/TrEMBL:Q9CBB4,NCBI_GP:CAC31220.1;Name=CAC31220.1;Note=Unknown function.;gbkey=CDS;gene=ML2264;product=hypothetical protein;protein_id=CAC31220.1;transl_table=11
AL450380.1	EMBL	gene	2688062	2688283	.	-	.	ID=gene-ML2265;Name=ML2265;gbkey=Gene;gene=ML2265;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2688062	2688283	.	-	0	ID=cds-CAC31221.1;Parent=gene-ML2265;Dbxref=UniProtKB/TrEMBL:Q9CBB3,NCBI_GP:CAC31221.1;Name=CAC31221.1;Note=Unknown function.;gbkey=CDS;gene=ML2265;product=hypothetical protein;protein_id=CAC31221.1;transl_table=11
AL450380.1	EMBL	pseudogene	2688575	2690078	.	-	.	ID=gene-fadD8;Name=fadD8;gbkey=Gene;gene=fadD8;gene_biotype=pseudogene;gene_synonym=ML2266;pseudo=true
AL450380.1	EMBL	CDS	2688575	2690078	.	-	0	ID=cds-fadD8;Parent=gene-fadD8;Note=Possible pseudogene of M. tuberculosis orthologue fadD8 (Best blastx score 345);gbkey=CDS;gene=fadD8;product=acyl-CoA synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2690186	2691791	.	+	.	ID=gene-ML2267;Name=ML2267;gbkey=Gene;gene=ML2267;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2690186	2691791	.	+	0	ID=cds-ML2267;Parent=gene-ML2267;Note=Possible pseudogene of M. tuberculosis orthologue Rv0552 (Best blastx score 526);gbkey=CDS;gene=ML2267;product=putative transcriptional regulator (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2691797	2692801	.	+	.	ID=gene-ML2268;Name=ML2268;gbkey=Gene;gene=ML2268;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2691797	2692801	.	+	0	ID=cds-CAC31784.1;Parent=gene-ML2268;Dbxref=GOA:Q9CBB2,InterPro:IPR001354,InterPro:IPR010196,InterPro:IPR013342,InterPro:IPR029017,InterPro:IPR029065,NCBI_GP:CAC31784.1;Name=CAC31784.1;Note=Similar to Mycobacterium tuberculosis MenC or Rv0553 or MTCY25D10.32 TR:O06419 (EMBL:Z95558) (326 aa) fasta scores: E(): 0%2C 79.1%25 id in 326 aa. Similar to isomerases e.g. Pseudomonas sp. chloromuconate cycloisomerase tcbD SW:TCBD_PSESQ (P27099) (370 aa) fasta scores: E(): 2.6e-10%2C 31.4%25 id in 226 aa and to Rhodococcus opacus muconate cycloisomerase I catB SW:CATB_RHOOP (P95608) (373 aa) fasta scores: E(): 4.4e-09%2C 29.8%25 id in 225 aa. Also similar to Amycolatopsis sp. N-acylamino acid racemase aaaR TR:Q44244 (EMBL:D30738) (368 aa) fasta scores: E(): 2.5e-06%2C 30.0%25 id in 243 aa. Contains Pfam match to entry PF01188 MR_MLE%2C Mandelate racemase / muconate lactonizing enzyme family.;gbkey=CDS;gene=ML2268;product=putative isomerase/racemase;protein_id=CAC31784.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2691809	2692651	.	+	.	ID=id-ML2268;Note=Pfam match to entry PF01188 MR_MLE%2C Mandelate racemase / muconate lactonizing enzyme family%2C score -64.90%2C E-value 0.00011;gbkey=misc_feature;gene=ML2268
AL450380.1	EMBL	gene	2692764	2693561	.	+	.	ID=gene-ML2269;Name=ML2269;gbkey=Gene;gene=ML2269;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2692764	2693561	.	+	0	ID=cds-CAC31785.1;Parent=gene-ML2269;Dbxref=GOA:Q9CBB1,InterPro:IPR000073,InterPro:IPR000639,InterPro:IPR029058,UniProtKB/TrEMBL:Q9CBB1,NCBI_GP:CAC31785.1;Name=CAC31785.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv0554 or MTCY25D10.33 TR:O06420 (EMBL:Z95558) (262 aa) fasta scores: E(): 0%2C 83.5%25 id in 261 aa. Shows weak similarity to various hydrolases e.g. Rhodococcus opacus 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase pcaL TR:O67982 (EMBL:AF003947) (400 aa) fasta scores: E(): 1.9e-11%2C 27.4%25 id in 266 aa. Also similar to oxidoreductases which have an alpha/beta hydrolase fold e.g. Streptomyces aureofaciens non-haem bromoperoxidase bpoA2 SW:BPA2_STRAU (P29715) (277 aa) fasta scores: E(): 1.6e-13%2C 29.5%25 id in 275 aa. Contains Pfam match to entry PF00561 abhydrolase%2C alpha/beta hydrolase fold.;gbkey=CDS;gene=ML2269;product=putative hydrolase;protein_id=CAC31785.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2692884	2693534	.	+	.	ID=id-ML2269;Note=Pfam match to entry PF00561 abhydrolase%2C alpha/beta hydrolase fold%2C score 86.00%2C E-value 7.7e-22;gbkey=misc_feature;gene=ML2269
AL450380.1	EMBL	gene	2693805	2695475	.	+	.	ID=gene-menD;Name=menD;gbkey=Gene;gene=menD;gene_biotype=protein_coding;gene_synonym=ML2270
AL450380.1	EMBL	CDS	2693805	2695475	.	+	0	ID=cds-CAC31786.1;Parent=gene-menD;Dbxref=GOA:Q9CBB0,InterPro:IPR004433,InterPro:IPR012001,InterPro:IPR029061,NCBI_GP:CAC31786.1;Name=CAC31786.1;Note=Similar to Mycobacterium tuberculosis menD or Rv0555 or MTCY25D10.34 TR:O06421 (EMBL:Z95558) (554 aa) fasta scores: E(): 0%2C 85.4%25 id in 556 aa. Similar to Bacillus subtilis menaquinone biosynthesis protein MenD (includes 2-succinyl-6-hydroxy- 2%2C4-cyclohexadiene-1-carboxylate synthase%2C 2-oxoglutarate decarboxylase) menD SW:MEND_BACSU (P23970%3B P23969%3B O34492) (580 aa) fasta scores: E(): 2.9e-21%2C 31.6%25 id in 594 aa.;gbkey=CDS;gene=menD;product=putative 2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase / 2-oxoglutarate decarboxylase;protein_id=CAC31786.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	2695486	2695492	.	+	.	ID=id-AL450380.1:2695486..2695492;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	2695503	2696030	.	+	.	ID=gene-ML2271;Name=ML2271;gbkey=Gene;gene=ML2271;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2695503	2696030	.	+	0	ID=cds-CAC31787.1;Parent=gene-ML2271;Dbxref=UniProtKB/TrEMBL:Q9CBA9,NCBI_GP:CAC31787.1;Name=CAC31787.1;Note=Similar to Mycobacterium tuberculosis putative membrane protein Rv0556 or MTCY25D10.35 TR:O06422 (EMBL:Z95558) (171 aa) fasta scores: E(): 0%2C 79.2%25 id in 168 aa. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML2271;product=putative membrane protein.;protein_id=CAC31787.1;transl_table=11
AL450380.1	EMBL	pseudogene	2696136	2697228	.	+	.	ID=gene-ML2272;Name=ML2272;gbkey=Gene;gene=ML2272;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2696136	2697228	.	+	0	ID=cds-ML2272;Parent=gene-ML2272;Note=Possible pseudogene of M. tuberculosis orthologue Rv0557 (Best blastx score 351);gbkey=CDS;gene=ML2272;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2697283	2697999	.	+	.	ID=gene-ML2273;Name=ML2273;gbkey=Gene;gene=ML2273;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2697283	2697999	.	+	0	ID=cds-CAC31789.1;Parent=gene-ML2273;Dbxref=GOA:Q9CBA8,InterPro:IPR004033,InterPro:IPR023576,InterPro:IPR029063,NCBI_GP:CAC31789.1;Name=CAC31789.1;Note=Similar to Mycobacterium tuberculosis putative ubiquinone/menaquinone biosynthesis methyltransferase Rv0558 or MTCY25D10.37 TR:O06424 (EMBL:Z95558) (234 aa) fasta scores: E(): 0%2C 83.3%25 id in 228 aa. Similar to many e.g. Streptomyces coelicolor putative ubiquinone/menaquinone methyltransferase SC10A7.27C TR:Q9XAP8 (EMBL:AL078618) (231 aa) fasta scores: E(): 0%2C 64.9%25 id in 225 aa and to Escherichia coli ubiquinone/menaquinone biosynthesis methyltransferase UbiE ubiE SW:UBIE_ECOLI (P27851) (251 aa) fasta scores: E(): 2.7e-19%2C 42.8%25 id in 229 aa. Contains Pfam match to entry PF01209 Ubie_methyltran%2C ubiE/COQ5 methyltransferase family.;gbkey=CDS;gene=ML2273;product=putative ubiquinone/menaquinone biosynthesis methyltransferase;protein_id=CAC31789.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2697316	2697987	.	+	.	ID=id-ML2273;Note=Pfam match to entry PF01209 Ubie_methyltran%2C ubiE/COQ5 methyltransferase family%2C score 161.00%2C E-value 2.1e-44;gbkey=misc_feature;gene=ML2273
AL450380.1	EMBL	gene	2698017	2698355	.	-	.	ID=gene-ML2274;Name=ML2274;gbkey=Gene;gene=ML2274;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2698017	2698355	.	-	0	ID=cds-CAC31790.1;Parent=gene-ML2274;Dbxref=InterPro:IPR007969,UniProtKB/TrEMBL:Q9CBA7,NCBI_GP:CAC31790.1;Name=CAC31790.1;Note=Similar to Mycobacterium tuberculosis putative secreted protein Rv0559c or MTCY25D10.38C TR:O06425 (EMBL:Z95558) (112 aa) fasta scores: E(): 6.3e-32%2C 69.6%25 id in 112 aa. Contains a probable N-terminal signal sequence.;gbkey=CDS;gene=ML2274;product=putative secreted protein;protein_id=CAC31790.1;transl_table=11
AL450380.1	EMBL	pseudogene	2698390	2698794	.	-	.	ID=gene-ML2275;Name=ML2275;gbkey=Gene;gene=ML2275;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2698390	2698794	.	-	0	ID=cds-ML2275;Parent=gene-ML2275;Note=Possible pseudogene of M. tuberculosis orthologue Rv0560c (Best blastx score 157);gbkey=CDS;gene=ML2275;product=methyl transferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2698907	2700133	.	-	.	ID=gene-ML2276;Name=ML2276;gbkey=Gene;gene=ML2276;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2698907	2700133	.	-	0	ID=cds-CAC31792.1;Parent=gene-ML2276;Dbxref=GOA:Q9CBA6,InterPro:IPR002938,InterPro:IPR003042,InterPro:IPR011777,UniProtKB/TrEMBL:Q9CBA6,NCBI_GP:CAC31792.1;Name=CAC31792.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv0561c or MTCY25D10.40C TR:O06427 (EMBL:Z95558) (408 aa) fasta scores: E(): 0%2C 84.5%25 id in 406 aa. Shows weak similarity to many oxidoreductases e.g. Escherichia coli FixC protein fixC SW:FIXC_ECOLI (P31575%3B P75626) (428 aa) fasta scores: E(): 1.7e-05%2C 25.4%25 id in 417 aa. Contains Pfam match to entry PF01494 FAD_binding_3%2C FAD binding domain.;gbkey=CDS;gene=ML2276;product=putative FAD-linked oxidoreductase;protein_id=CAC31792.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2699705	2700109	.	-	.	ID=id-ML2276;Note=Pfam match to entry PF01494 FAD_binding_3%2C FAD binding domain%2C score 7.10%2C E-value 0.0001;gbkey=misc_feature;gene=ML2276
AL450380.1	EMBL	gene	2700164	2701156	.	+	.	ID=gene-ML2277;Name=ML2277;gbkey=Gene;gene=ML2277;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2700164	2701156	.	+	0	ID=cds-CAC31793.1;Parent=gene-ML2277;Dbxref=GOA:Q9CBA5,InterPro:IPR000092,InterPro:IPR008949,InterPro:IPR017446,UniProtKB/TrEMBL:Q9CBA5,NCBI_GP:CAC31793.1;Name=CAC31793.1;Note=Similar to Mycobacterium tuberculosis putative heptaprenyl diphosphate synthase Rv0562 or MTCY25D10.41 TR:O06428 (EMBL:Z95558) (335 aa) fasta scores: E(): 0%2C 76.4%25 id in 335 aa and to Mycobacterium tuberculosis isoprene biosynthesis transferase Rv0989c or MTCI237.03C TR:O05572 (EMBL:Z94752) (325 aa) fasta scores: E(): 0%2C 53.6%25 id in 323 aa. Similar to many polyprenyl synthase components e.g. Bacillus stearothermophilus heptaprenyl diphosphate synthase component ii hepT or heps-2 SW:HEP2_BACST (P55785) (320 aa) fasta scores: E(): 1.2e-31%2C 33.8%25 id in 320 aa. Contains Pfam match to entry PF00348 polyprenyl_synt%2C Polyprenyl synthetases. Contains PS00444 Polyprenyl synthetases signature 2.;gbkey=CDS;gene=ML2277;product=polyprenyl diphosphate synthase component;protein_id=CAC31793.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2700275	2701033	.	+	.	ID=id-ML2277;Note=Pfam match to entry PF00348 polyprenyl_synt%2C Polyprenyl synthetases%2C score 156.70%2C E-value 4.1e-43;gbkey=misc_feature;gene=ML2277
AL450380.1	EMBL	sequence_feature	2700791	2700829	.	+	.	ID=id-ML2277-2;Note=PS00444 Polyprenyl synthetases signature 2;gbkey=misc_feature;gene=ML2277
AL450380.1	EMBL	ribosome_entry_site	2701253	2701259	.	+	.	ID=id-AL450380.1:2701253..2701259;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	2701267	2702130	.	+	.	ID=gene-htpX;Name=htpX;gbkey=Gene;gene=htpX;gene_biotype=protein_coding;gene_synonym=ML2278
AL450380.1	EMBL	CDS	2701267	2702130	.	+	0	ID=cds-CAC31794.1;Parent=gene-htpX;Dbxref=GOA:Q9CBA4,InterPro:IPR001915,InterPro:IPR022919,NCBI_GP:CAC31794.1;Name=CAC31794.1;Note=Similar to Mycobacterium tuberculosis probable protease htpX or Rv0563 or MTV039.01 or MTCY25D10.42 SW:HTPX_MYCTU (O06429) (286 aa) fasta scores: E(): 0%2C 88.5%25 id in 286 aa. Similar to many homologues of Escherichia coli probable protease and heat-shock protein HtpX SW:HTPX_ECOLI (P23894) (293 aa) blastp score: 78.1 bits%2C 30%25 id in 253 aa. Contains hydrophobic%2C possible membrane-spanning regions. Contains Pfam match to entry PF01435 Peptidase_M48%2C Peptidase family M48. Contains PS00142 Neutral zinc metallopeptidases%2C zinc-binding region signature.;gbkey=CDS;gene=htpX;product=putative peptidase;protein_id=CAC31794.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2701495	2702106	.	+	.	ID=id-htpX;Note=Pfam match to entry PF01435 Peptidase_M48%2C Peptidase family M48%2C score 106.70%2C E-value 4.6e-28;gbkey=misc_feature;gene=htpX
AL450380.1	EMBL	sequence_feature	2701660	2701689	.	+	.	ID=id-htpX-2;Note=PS00142 Neutral zinc metallopeptidases%2C zinc-binding region signature;gbkey=misc_feature;gene=htpX
AL450380.1	EMBL	gene	2702658	2704148	.	-	.	ID=gene-ML2279;Name=ML2279;gbkey=Gene;gene=ML2279;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2702658	2704148	.	-	0	ID=cds-CAC31795.1;Parent=gene-ML2279;Dbxref=GOA:Q9CBA3,InterPro:IPR011547,UniProtKB/TrEMBL:Q9CBA3,NCBI_GP:CAC31795.1;Name=CAC31795.1;Note=Similar to Mycobacterium tuberculosis putative membrane protein Rv3273 or MTCY71.13 TR:P96878 (EMBL:Z92771) (764 aa) fasta scores: E(): 0%2C 59.4%25 id in 483 aa. Similar to many putative membrane proteins e.g. Streptomyces coelicolor putative integral membrane protein sch5.25 TR:Q9X927 (EMBL:AL035636) (830 aa) fasta scores: E(): 0%2C 46.5%25 id in 475 aa. Contains Pfam match to entry PF00916 Sulfate_transp%2C Sulfate transporter family.;gbkey=CDS;gene=ML2279;product=putative transmembrane transport protein;protein_id=CAC31795.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2702973	2703866	.	-	.	ID=id-ML2279;Note=Pfam match to entry PF00916 Sulfate_transp%2C Sulfate transporter family%2C score 211.00%2C E-value 1.8e-59;gbkey=misc_feature;gene=ML2279
AL450380.1	EMBL	pseudogene	2704481	2705467	.	-	.	ID=gene-ML2280;Name=ML2280;gbkey=Gene;gene=ML2280;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2704481	2705467	.	-	0	ID=cds-ML2280;Parent=gene-ML2280;Note=Possible pseudogene of M. tuberculosis orthologue gpdA1 (Best blastx score 338);gbkey=CDS;gene=ML2280;product=glycerol-3-phosphate dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2705535	2706675	.	-	.	ID=gene-ML2281;Name=ML2281;gbkey=Gene;gene=ML2281;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2705535	2706675	.	-	0	ID=cds-ML2281;Parent=gene-ML2281;Note=Possible pseudogene of M. tuberculosis orthologue Rv0565c (Best blastx score 482);gbkey=CDS;gene=ML2281;product=Probable monooxygenasemonoxygenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2706834	2707315	.	-	.	ID=gene-ML2282;Name=ML2282;gbkey=Gene;gene=ML2282;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2706834	2707315	.	-	0	ID=cds-ML2282;Parent=gene-ML2282;Note=Possible pseudogene of M. tuberculosis orthologue Rv0566c (Best blastx score 377);gbkey=CDS;gene=ML2282;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2707385	2707468	.	+	.	ID=gene-tyrT;Name=tyrT;gbkey=Gene;gene=tyrT;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	2707385	2707468	.	+	.	ID=rna-tyrT;Parent=gene-tyrT;Note=tRNA Tyr anticodon GTA%2C Cove score 59.73;gbkey=tRNA;gene=tyrT;product=tRNA-Tyr
AL450380.1	EMBL	exon	2707385	2707468	.	+	.	ID=exon-tyrT-1;Parent=rna-tyrT;Note=tRNA Tyr anticodon GTA%2C Cove score 59.73;gbkey=tRNA;gene=tyrT;product=tRNA-Tyr
AL450380.1	EMBL	gene	2707732	2708046	.	+	.	ID=gene-ML2283;Name=ML2283;gbkey=Gene;gene=ML2283;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2707732	2708046	.	+	0	ID=cds-CAC31799.1;Parent=gene-ML2283;Dbxref=UniProtKB/TrEMBL:Q9CBA2,NCBI_GP:CAC31799.1;Name=CAC31799.1;Note=Unknown function.;gbkey=CDS;gene=ML2283;product=hypothetical protein;protein_id=CAC31799.1;transl_table=11
AL450380.1	EMBL	gene	2708438	2708797	.	+	.	ID=gene-ML2284;Name=ML2284;gbkey=Gene;gene=ML2284;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2708438	2708797	.	+	0	ID=cds-CAC31800.1;Parent=gene-ML2284;Dbxref=UniProtKB/TrEMBL:Q9CBA1,NCBI_GP:CAC31800.1;Name=CAC31800.1;Note=Unknown function.;gbkey=CDS;gene=ML2284;product=hypothetical protein;protein_id=CAC31800.1;transl_table=11
AL450380.1	EMBL	pseudogene	2709378	2709924	.	-	.	ID=gene-ML2285;Name=ML2285;gbkey=Gene;gene=ML2285;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2709378	2709924	.	-	0	ID=cds-ML2285;Parent=gene-ML2285;Note=Possible pseudogene similar to M. tuberculosis paralogue Rv1986 (Best blastx score 161);gbkey=CDS;gene=ML2285;product=probable membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2710032	2710840	.	+	.	ID=gene-ML2286;Name=ML2286;gbkey=Gene;gene=ML2286;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2710032	2710840	.	+	0	ID=cds-ML2286;Parent=gene-ML2286;Note=Possible pseudogene similar to M. tuberculosis paralogue Rv1985c (Best blastx score 238);gbkey=CDS;gene=ML2286;product=transcriptional regulator (LysR family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2711137	2712265	.	-	.	ID=gene-ML2287;Name=ML2287;gbkey=Gene;gene=ML2287;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2711137	2712265	.	-	0	ID=cds-ML2287;Parent=gene-ML2287;Note=Possible pseudogene of M. tuberculosis orthologue Rv0575c (Best blastx score 421);gbkey=CDS;gene=ML2287;product=possible oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2712436	2712660	.	-	.	ID=gene-ML2288;Name=ML2288;gbkey=Gene;gene=ML2288;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2712436	2712660	.	-	0	ID=cds-CAC31804.1;Parent=gene-ML2288;Dbxref=UniProtKB/TrEMBL:Q9CBA0,NCBI_GP:CAC31804.1;Name=CAC31804.1;Note=Unknown function.;gbkey=CDS;gene=ML2288;product=hypothetical protein;protein_id=CAC31804.1;transl_table=11
AL450380.1	EMBL	gene	2713408	2714178	.	-	.	ID=gene-ML2289;Name=ML2289;gbkey=Gene;gene=ML2289;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2713408	2714178	.	-	0	ID=cds-CAC31805.1;Parent=gene-ML2289;Dbxref=InterPro:IPR003812,UniProtKB/TrEMBL:Q9CB99,NCBI_GP:CAC31805.1;Name=CAC31805.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv3662c or MTV025.010C TR:O69630 (EMBL:AL022121) (256 aa) fasta scores: E(): 0%2C 78.0%25 id in 255 aa and to Streptomyces coelicolor putative oxidoreductase SCH5.22C TR:Q9X924 (EMBL:AL035636) (274 aa) fasta scores: E(): 1e-11%2C 40.9%25 id in 269 aa.;gbkey=CDS;gene=ML2289;product=conserved hypothetical protein;protein_id=CAC31805.1;transl_table=11
AL450380.1	EMBL	pseudogene	2714196	2715815	.	-	.	ID=gene-dppD;Name=dppD;gbkey=Gene;gene=dppD;gene_biotype=pseudogene;gene_synonym=ML2290;pseudo=true
AL450380.1	EMBL	CDS	2714196	2715815	.	-	0	ID=cds-dppD;Parent=gene-dppD;Note=Possible pseudogene of M. tuberculosis orthologue dppD (Best blastx score 822);gbkey=CDS;gene=dppD;product=probable ABC-transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2715858	2716656	.	-	.	ID=gene-dppC;Name=dppC;gbkey=Gene;gene=dppC;gene_biotype=pseudogene;gene_synonym=ML2291;pseudo=true
AL450380.1	EMBL	CDS	2715858	2716656	.	-	0	ID=cds-dppC;Parent=gene-dppC;Note=Possible pseudogene of M. tuberculosis orthologue dppC (Best blastx score 432);gbkey=CDS;gene=dppC;product=probable peptide transport system permease (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2716763	2717619	.	-	.	ID=gene-dppB;Name=dppB;gbkey=Gene;gene=dppB;gene_biotype=pseudogene;gene_synonym=ML2292;pseudo=true
AL450380.1	EMBL	CDS	2716763	2717619	.	-	0	ID=cds-dppB;Parent=gene-dppB;Note=Possible pseudogene of M. tuberculosis orthologue dppB (Best blastx score 601);gbkey=CDS;gene=dppB;product=probable peptide transport system permease (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2717624	2718107	.	-	.	ID=gene-ML2293;Name=ML2293;gbkey=Gene;gene=ML2293;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2717624	2718107	.	-	0	ID=cds-ML2293;Parent=gene-ML2293;Note=Possible pseudogene of M. tuberculosis orthologue dppA (Best blastx score 304);gbkey=CDS;gene=ML2293;product=putative peptide transport system secreted peptide-binding protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2718829	2720514	.	+	.	ID=gene-acs;Name=acs;gbkey=Gene;gene=acs;gene_biotype=pseudogene;gene_synonym=ML2294;pseudo=true
AL450380.1	EMBL	CDS	2718829	2720514	.	+	0	ID=cds-acs;Parent=gene-acs;Note=Possible pseudogene of M. tuberculosis orthologue acs (Best blastx score 303);gbkey=CDS;gene=acs;product=acetyl-CoA synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2720556	2721260	.	-	.	ID=gene-ML2295;Name=ML2295;gbkey=Gene;gene=ML2295;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2720556	2721260	.	-	0	ID=cds-CAC31811.1;Parent=gene-ML2295;Dbxref=GOA:Q9CB98,InterPro:IPR009003,UniProtKB/TrEMBL:Q9CB98,NCBI_GP:CAC31811.1;Name=CAC31811.1;Note=Similar to Mycobacterium tuberculosis putative alkaline serine protease Rv3668c or MTV025.016C TR:O69636 (EMBL:AL022121) (232 aa) fasta scores: E(): 0%2C 77.1%25 id in 231 aa. Shows weak similarity to the C-terminal half of some proteases e.g. Thermomonospora fusca alkaline serine protease precursor TR:O86984 (EMBL:U65895) (368 aa) fasta scores: E(): 0.0018%2C 31.4%25 id in 153 aa.;gbkey=CDS;gene=ML2295;product=conserved hypothetical protein;protein_id=CAC31811.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	2721451	2721456	.	+	.	ID=id-AL450380.1:2721451..2721456;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	2721464	2722009	.	+	.	ID=gene-ML2296;Name=ML2296;gbkey=Gene;gene=ML2296;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2721464	2722009	.	+	0	ID=cds-CAC31812.1;Parent=gene-ML2296;Dbxref=InterPro:IPR009937,UniProtKB/TrEMBL:Q9CB97,NCBI_GP:CAC31812.1;Name=CAC31812.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv3669 or MTV025.017 TR:O69637 (EMBL:AL022121) (172 aa) fasta scores: E(): 0%2C 77.9%25 id in 181 aa. Similar to Streptomyces coelicolor putative integral membrane transport protein SCH5.28 TR:Q9X930 (EMBL:AL035636) (162 aa) fasta scores: E(): 3.3e-10%2C 37.3%25 id in 153 aa%2C and to putative integral membrane protein SCI7.29C TR:Q9X9W1 (EMBL:AL096743) (165 aa) fasta scores: E(): 1.1e-05%2C 32.1%25 id in 134 aa. Contains hydrophobic%2C possible membrane-spanning regions.;gbkey=CDS;gene=ML2296;product=putative membrane protein;protein_id=CAC31812.1;transl_table=11
AL450380.1	EMBL	gene	2722010	2722984	.	+	.	ID=gene-ML2297;Name=ML2297;gbkey=Gene;gene=ML2297;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2722010	2722984	.	+	0	ID=cds-CAC31813.1;Parent=gene-ML2297;Dbxref=GOA:Q9CB96,InterPro:IPR000073,InterPro:IPR000639,InterPro:IPR029058,UniProtKB/TrEMBL:Q9CB96,NCBI_GP:CAC31813.1;Name=CAC31813.1;Note=Similar to Mycobacterium tuberculosis putative epoxide hydrolase Rv3670 or MTV025.018 TR:O69638 (EMBL:AL022121) (327 aa) fasta scores: E(): 0%2C 80.6%25 id in 324 aa. Similar many putative hydrolases and shows weak similarity to Homo sapiens soluble epoxide hydrolase ephX2 SW:HYES_HUMAN (P34913) (554 aa) fasta scores: E(): 3.1e-12%2C 28.1%25 id in 285 aa. Contains Pfam match to entry PF00561 abhydrolase%2C alpha/beta hydrolase fold.;gbkey=CDS;gene=ML2297;product=putative hydrolase;protein_id=CAC31813.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2722232	2722954	.	+	.	ID=id-ML2297;Note=Pfam match to entry PF00561 abhydrolase%2C alpha/beta hydrolase fold%2C score 83.80%2C E-value 3.4e-21;gbkey=misc_feature;gene=ML2297
AL450380.1	EMBL	gene	2722977	2724182	.	-	.	ID=gene-ML2298;Name=ML2298;gbkey=Gene;gene=ML2298;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2722977	2724182	.	-	0	ID=cds-CAC31814.1;Parent=gene-ML2298;Dbxref=GOA:Q9CB95,InterPro:IPR001254,InterPro:IPR001940,InterPro:IPR003825,InterPro:IPR009003,InterPro:IPR015724,UniProtKB/TrEMBL:Q9CB95,NCBI_GP:CAC31814.1;Name=CAC31814.1;Note=Similar to Mycobacterium tuberculosis putative serine protease Rv3671c or MTV025.019C TR:O69639 (EMBL:AL022121) (397 aa) fasta scores: E(): 0%2C 80.9%25 id in 398 aa. Similar to many putative serine proteases Streptomyces coelicolor putative serine protease SCH5.30C TR:Q9X932 (EMBL:AL035636) (385 aa) fasta scores: E(): 0%2C 39.0%25 id in 385 aa. N-terminal half contains hydrophobic%2C possible membrane-spanning regions. Contains Pfam match to entry PF00089 trypsin%2C Trypsin.;gbkey=CDS;gene=ML2298;product=putative membrane-associated serine protease;protein_id=CAC31814.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2723094	2723513	.	-	.	ID=id-ML2298;Note=Pfam match to entry PF00089 trypsin%2C Trypsin%2C score 21.90%2C E-value 4.4e-06;gbkey=misc_feature;gene=ML2298
AL450380.1	EMBL	gene	2724179	2724979	.	-	.	ID=gene-ML2299;Name=ML2299;gbkey=Gene;gene=ML2299;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2724179	2724979	.	-	0	ID=cds-CAC31815.1;Parent=gene-ML2299;Dbxref=GOA:Q9CB94,InterPro:IPR000059,InterPro:IPR000086,InterPro:IPR015797,UniProtKB/TrEMBL:Q9CB94,NCBI_GP:CAC31815.1;Name=CAC31815.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv3672c or MTV025.020C TR:O69640 (EMBL:AL022121) (273 aa) fasta scores: E(): 0%2C 76.4%25 id in 267 aa. Similar to hypothetical proteins e.g. Streptomyces coelicolor hypothetical protein SCH17.02C TR:Q9XA45 (EMBL:AL079353) (247 aa) fasta scores: E(): 6.7e-26%2C 43.5%25 id in 232 aa. Contains PS01293 Uncharacterized protein family UPF0035 signature.;gbkey=CDS;gene=ML2299;product=conserved hypothetical protein;protein_id=CAC31815.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2724635	2724697	.	-	.	ID=id-ML2299;Note=PS01293 Uncharacterized protein family UPF0035 signature;gbkey=misc_feature;gene=ML2299
AL450380.1	EMBL	gene	2725025	2725672	.	-	.	ID=gene-ML2300;Name=ML2300;gbkey=Gene;gene=ML2300;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2725025	2725672	.	-	0	ID=cds-CAC31816.1;Parent=gene-ML2300;Dbxref=GOA:Q9CB93,InterPro:IPR012336,InterPro:IPR013740,InterPro:IPR017937,UniProtKB/TrEMBL:Q9CB93,NCBI_GP:CAC31816.1;Name=CAC31816.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv3673c or MTV025.021C TR:O69641 (EMBL:AL022121) (227 aa) fasta scores: E(): 0%2C 71.2%25 id in 215 aa. Shows weak similarity to Bacillus subtilis ResA protein resA SW:RESA_BACSU (P35160) (181 aa) fasta scores: E(): 5e-06%2C 31.6%25 id in 114 aa and to thioredoxins. Contains hydrophobic%2C possible membrane-spanning region. Contains PS00194 Thioredoxin family active site.;gbkey=CDS;gene=ML2300;product=putative membrane protein;protein_id=CAC31816.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2725301	2725357	.	-	.	ID=id-ML2300;Note=PS00194 Thioredoxin family active site;gbkey=misc_feature;gene=ML2300
AL450380.1	EMBL	gene	2725723	2726484	.	-	.	ID=gene-nth;Name=nth;gbkey=Gene;gene=nth;gene_biotype=protein_coding;gene_synonym=ML2301
AL450380.1	EMBL	CDS	2725723	2726484	.	-	0	ID=cds-CAC31817.1;Parent=gene-nth;Dbxref=GOA:Q9CB92,InterPro:IPR003265,InterPro:IPR003651,InterPro:IPR004035,InterPro:IPR004036,InterPro:IPR005759,InterPro:IPR011257,InterPro:IPR023170,NCBI_GP:CAC31817.1;Name=CAC31817.1;Note=Similar to Mycobacterium tuberculosis endonuclease III ntH or Rv3674c or MTV025.022C SW:END3_MYCTU (O69642) (226 aa) fasta scores: E(): 0%2C 89.4%25 id in 226 aa. Similar to many e.g. Micrococcus luteus ultraviolet N-glycosylase/ap lyase pdG SW:UVEN_MICLU (P46303) (279 aa) fasta scores: E(): 0%2C 57.7%25 id in 246 aa and to Escherichia coli endonuclease III ntH SW:END3_ECOLI (P20625) (211 aa) fasta scores: E(): 7.6e-24%2C 36.6%25 id in 205 aa. Contains Pfam match to entry PF00730 Endonuclease_3%2C Endonuclease III. Contains PS01155 Endonuclease III family signature. Contains PS00764 Endonuclease III iron-sulfur binding region signature.;gbkey=CDS;gene=nth;product=putative endonuclease III;protein_id=CAC31817.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2725816	2726340	.	-	.	ID=id-nth;Note=Pfam match to entry PF00730 Endonuclease_3%2C Endonuclease III%2C score 225.30%2C E-value 8.9e-64;gbkey=misc_feature;gene=nth
AL450380.1	EMBL	sequence_feature	2725819	2725869	.	-	.	ID=id-nth-2;Note=PS00764 Endonuclease III iron-sulfur binding region signature;gbkey=misc_feature;gene=nth
AL450380.1	EMBL	sequence_feature	2726035	2726124	.	-	.	ID=id-nth-3;Note=PS01155 Endonuclease III family signature;gbkey=misc_feature;gene=nth
AL450380.1	EMBL	gene	2726910	2727584	.	+	.	ID=gene-ML2302;Name=ML2302;gbkey=Gene;gene=ML2302;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2726910	2727584	.	+	0	ID=cds-CAC31818.1;Parent=gene-ML2302;Dbxref=GOA:Q9CB91,InterPro:IPR000595,InterPro:IPR001808,InterPro:IPR011991,InterPro:IPR012318,InterPro:IPR014710,InterPro:IPR018490,UniProtKB/TrEMBL:Q9CB91,NCBI_GP:CAC31818.1;Name=CAC31818.1;Note=Similar to Mycobacterium tuberculosis putative transcriptional regulator Rv3676 or MTV025.024 TR:O69644 (EMBL:AL022121) (224 aa) fasta scores: E(): 0%2C 96.0%25 id in 224 aa. Similar to many e.g. Haemophilus influenzae catabolite gene activator crp or cap or HI0957 SW:CRP_HAEIN (P29281) (224 aa) fasta scores: E(): 2.4e-14%2C 32.6%25 id in 187 aa. Contains a probable helix-turn-helix motif at aa 175-196 (Score 1990%2C SD +5.96) Contains Pfam match to entry PF00325 crp%2C Bacterial regulatory proteins%2C crp family. Contains Pfam match to entry PF00027 cNMP_binding%2C Cyclic nucleotide-binding domain.;gbkey=CDS;gene=ML2302;product=putative Crp/Fnr-family transcriptional regulator;protein_id=CAC31818.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2726982	2727263	.	+	.	ID=id-ML2302;Note=Pfam match to entry PF00027 cNMP_binding%2C Cyclic nucleotide-binding domain%2C score 118.80%2C E-value 1e-31;gbkey=misc_feature;gene=ML2302
AL450380.1	EMBL	sequence_feature	2727429	2727521	.	+	.	ID=id-ML2302-2;Note=Pfam match to entry PF00325 crp%2C Bacterial regulatory proteins%2C crp family%2C score 24.70%2C E-value 1.5e-06;gbkey=misc_feature;gene=ML2302
AL450380.1	EMBL	gene	2727662	2728450	.	-	.	ID=gene-ML2303;Name=ML2303;gbkey=Gene;gene=ML2303;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2727662	2728450	.	-	0	ID=cds-CAC31819.1;Parent=gene-ML2303;Dbxref=GOA:Q9CB90,InterPro:IPR001279,UniProtKB/TrEMBL:Q9CB90,NCBI_GP:CAC31819.1;Name=CAC31819.1;Note=Similar to Mycobacterium tuberculosis putative hydrolase Rv3677c or MTV025.025C TR:O69645 (EMBL:AL022121) (264 aa) fasta scores: E(): 0%2C 83.9%25 id in 255 aa. Shows similarity to putative bacterial hydrolases and also to eukaryotic proteins of unknown function. Contains Pfam match to entry PF00753 lactamase_B%2C Metallo-beta-lactamase superfamily.;gbkey=CDS;gene=ML2303;product=putative hydrolase;protein_id=CAC31819.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2727875	2728351	.	-	.	ID=id-ML2303;Note=Pfam match to entry PF00753 lactamase_B%2C Metallo-beta-lactamase superfamily%2C score 117.40%2C E-value 2.7e-31;gbkey=misc_feature;gene=ML2303
AL450380.1	EMBL	gene	2728456	2728980	.	-	.	ID=gene-ML2304;Name=ML2304;gbkey=Gene;gene=ML2304;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2728456	2728980	.	-	0	ID=cds-CAC31820.1;Parent=gene-ML2304;Dbxref=InterPro:IPR006175,InterPro:IPR013813,UniProtKB/TrEMBL:Q9CB89,NCBI_GP:CAC31820.1;Name=CAC31820.1;Note=Similar to Mycobacterium tuberculosis putative transcriptional regulator Rv3678c or MTV025.026C TR:O69646 (EMBL:AL022121) (151 aa) fasta scores: E(): 0%2C 78.1%25 id in 151 aa. Similar to Streptomyces coelicolor hypothetical protein SCH17.09C TR:Q9XA38 (EMBL:AL079353) (155 aa) fasta scores: E(): 1.7e-31%2C 64.7%25 id in 150 aa. Also similar to eukaryotic proteins Trypanosoma cruzi Pb5 pb5 TR:O96876 (EMBL:U67906) (160 aa) fasta scores: E(): 3.4e-20%2C 50.7%25 id in 150 aa and to Leishmania major hypothetical protein l7276.02 TR:Q9U0W7 (EMBL:AL133436) (163 aa) fasta scores: E(): 1.6e-16%2C 46.1%25 id in 152 aa. Contains Pfam match to entry PF01042 UPF0076%2C Domain of unknown function. Contains PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=CDS;gene=ML2304;product=conserved hypothetical protein;protein_id=CAC31820.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2728462	2728869	.	-	.	ID=id-ML2304;Note=Pfam match to entry PF01042 UPF0076%2C Domain of unknown function%2C score 8.60%2C E-value 5.2e-05;gbkey=misc_feature;gene=ML2304
AL450380.1	EMBL	sequence_feature	2728804	2728896	.	-	.	ID=id-ML2304-2;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature;gbkey=misc_feature;gene=ML2304
AL450380.1	EMBL	gene	2729191	2730216	.	+	.	ID=gene-ML2305;Name=ML2305;gbkey=Gene;gene=ML2305;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2729191	2730216	.	+	0	ID=cds-CAC31821.1;Parent=gene-ML2305;Dbxref=GOA:Q9CB88,InterPro:IPR016300,InterPro:IPR025723,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CB88,NCBI_GP:CAC31821.1;Name=CAC31821.1;Note=Similar to Mycobacterium tuberculosis putative ATPase Rv3679 SW:Y0H9_MYCTU (O69647) (340 aa) fasta scores: E(): 0%2C 84.2%25 id in 341 aa%2C and to Streptomyces coelicolor putative ion-transporting ATPase TR:Q9XA36 (EMBL:AL079353) (325 aa) fasta scores: E(): 0%2C 52.4%25 id in 330 aa.;gbkey=CDS;gene=ML2305;product=probable anion transporter protein;protein_id=CAC31821.1;transl_table=11
AL450380.1	EMBL	gene	2730213	2731358	.	+	.	ID=gene-ML2306;Name=ML2306;gbkey=Gene;gene=ML2306;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2730213	2731358	.	+	0	ID=cds-CAC31822.1;Parent=gene-ML2306;Dbxref=GOA:Q9CB87,InterPro:IPR016300,InterPro:IPR025723,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CB87,NCBI_GP:CAC31822.1;Name=CAC31822.1;Note=Similar to Mycobacterium tuberculosis putative anion transporting ATPase Rv3680 TR:O69648 (EMBL:AL022121) (386 aa) fasta scores: E(): 0%2C 88.1%25 id in 370 aa%2C and to Streptomyces coelicolor putative ion-transporting ATPase TR:Q9XA35 (EMBL:AL079353) (481 aa) fasta scores: E(): 0%2C 48.6%25 id in 432 aa. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML2306;product=probable anion transporter protein;protein_id=CAC31822.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2730300	2730323	.	+	.	ID=id-ML2306;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML2306
AL450380.1	EMBL	gene	2731463	2731708	.	-	.	ID=gene-ML2307;Name=ML2307;gbkey=Gene;gene=ML2307;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2731463	2731708	.	-	0	ID=cds-CAC31823.1;Parent=gene-ML2307;Dbxref=GOA:Q9CB86,InterPro:IPR003482,UniProtKB/TrEMBL:Q9CB86,NCBI_GP:CAC31823.1;Name=CAC31823.1;Note=Similar in part to Mycobacterium tuberculosis putative regulatory protein Rv3681c TR:O69649 (EMBL:AL022121) (100 aa) fasta scores: E(): 3e-32%2C 89.7%25 id in 78 aa.;gbkey=CDS;gene=ML2307;product=hypothetical protein;protein_id=CAC31823.1;transl_table=11
AL450380.1	EMBL	gene	2732187	2734598	.	+	.	ID=gene-pon1;Name=pon1;gbkey=Gene;gene=pon1;gene_biotype=protein_coding;gene_synonym=ML2308
AL450380.1	EMBL	CDS	2732187	2734598	.	+	0	ID=cds-CAC31824.1;Parent=gene-pon1;Dbxref=GOA:Q9CB85,InterPro:IPR001264,InterPro:IPR001460,InterPro:IPR005543,InterPro:IPR012338,InterPro:IPR023346,UniProtKB/TrEMBL:Q9CB85,NCBI_GP:CAC31824.1;Name=CAC31824.1;Note=Previously characterised Mycobacterium leprae penicillin-binding protein Pon1 TR:P72351 (EMBL:S82044) (821 aa) fasta scores: E(): 0%2C 98.6%25 id in 783 aa. Contains a possible N-terminal signal sequence. Contains Pfam match to entry PF00905 Transpeptidase%2C Penicillin binding protein transpeptidase domain. Contains Pfam match to entry PF00912 Transglycosyl%2C Transglycosylase.;gbkey=CDS;gene=pon1;product=penicillin binding protein (class A);protein_id=CAC31824.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2732373	2732915	.	+	.	ID=id-pon1;Note=Pfam match to entry PF00912 Transglycosyl%2C Transglycosylase%2C score 162.80%2C E-value 5.7e-45;gbkey=misc_feature;gene=pon1
AL450380.1	EMBL	sequence_feature	2733168	2734205	.	+	.	ID=id-pon1-2;Note=Pfam match to entry PF00905 Transpeptidase%2C Penicillin binding protein transpeptidase domain%2C score -29.60%2C E-value 2.6e-05;gbkey=misc_feature;gene=pon1
AL450380.1	EMBL	gene	2734787	2735779	.	+	.	ID=gene-ML2309;Name=ML2309;gbkey=Gene;gene=ML2309;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2734787	2735779	.	+	0	ID=cds-CAC31825.1;Parent=gene-ML2309;Dbxref=GOA:Q9CB84,InterPro:IPR024654,InterPro:IPR029052,UniProtKB/TrEMBL:Q9CB84,NCBI_GP:CAC31825.1;Name=CAC31825.1;Note=Similar to Mycobacterium tuberculosis hypothetical 34.4 kDa protein Rv3683 TR:O69651 (EMBL:AL022121) (319 aa) fasta scores: E(): 0%2C 85.8%25 id in 298 aa%2C and to Streptomyces coelicolor conserved hypothetical protein TR:Q9X935 (EMBL:AL049731) (309 aa) fasta scores: E(): 2.2e-32%2C 51.5%25 id in 295 aa.;gbkey=CDS;gene=ML2309;product=conserved hypothetical protein;protein_id=CAC31825.1;transl_table=11
AL450380.1	EMBL	pseudogene	2735793	2736720	.	+	.	ID=gene-ML2310;Name=ML2310;gbkey=Gene;gene=ML2310;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2735793	2736720	.	+	0	ID=cds-ML2310;Parent=gene-ML2310;Note=Possible pseudogene of M. tuberculosis orthologue Rv3684 (Best blastx score 298);gbkey=CDS;gene=ML2310;product=Probable lyase%2C cysteine metabolism (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2736797	2736870	.	+	.	ID=gene-proY;Name=proY;gbkey=Gene;gene=proY;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	2736797	2736870	.	+	.	ID=rna-proY;Parent=gene-proY;Note=tRNA Pro anticodon CGG%2C Cove score 75.56;gbkey=tRNA;gene=proY;product=tRNA-Pro
AL450380.1	EMBL	exon	2736797	2736870	.	+	.	ID=exon-proY-1;Parent=rna-proY;Note=tRNA Pro anticodon CGG%2C Cove score 75.56;gbkey=tRNA;gene=proY;product=tRNA-Pro
AL450380.1	EMBL	pseudogene	2739763	2739870	.	-	.	ID=gene-ML2311;Name=ML2311;gbkey=Gene;gene=ML2311;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2739763	2739870	.	-	0	ID=cds-ML2311;Parent=gene-ML2311;Note=Possible pseudogene of M. tuberculosis orthologue Rv3688c (Best blastx score 125);gbkey=CDS;gene=ML2311;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2739921	2740511	.	+	.	ID=gene-ML2312;Name=ML2312;gbkey=Gene;gene=ML2312;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2739921	2740511	.	+	0	ID=cds-CAC31828.1;Parent=gene-ML2312;Dbxref=UniProtKB/TrEMBL:Q9CB83,NCBI_GP:CAC31828.1;Name=CAC31828.1;Note=Similar to the C-terminus of Mycobacterium tuberculosis hypothetical protein Rv3695 TR:O69663 (EMBL:AL022121) (310 aa) fasta scores: E(): 0%2C 71.1%25 id in 190 aa and Streptomyces coelicolor putative integral membrane protein TR:CAB88905 (EMBL:AL353862) (318 aa) fasta scores: E(): 2e-15%2C 39.5%25 id in 190 aa. Contains a possible membrane spanning hydrophobic domain;gbkey=CDS;gene=ML2312;product=possible membrane protein;protein_id=CAC31828.1;transl_table=11
AL450380.1	EMBL	gene	2740945	2741547	.	+	.	ID=gene-ML2313;Name=ML2313;gbkey=Gene;gene=ML2313;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2740945	2741547	.	+	0	ID=cds-CAC31829.1;Parent=gene-ML2313;Dbxref=InterPro:IPR005149,InterPro:IPR011991,UniProtKB/TrEMBL:Q9CB82,NCBI_GP:CAC31829.1;Name=CAC31829.1;Note=Unknown function.;gbkey=CDS;gene=ML2313;product=hypothetical protein;protein_id=CAC31829.1;transl_table=11
AL450380.1	EMBL	gene	2741813	2743339	.	-	.	ID=gene-glpK;Name=glpK;gbkey=Gene;gene=glpK;gene_biotype=protein_coding;gene_synonym=ML2314
AL450380.1	EMBL	CDS	2741813	2743339	.	-	0	ID=cds-CAC31830.1;Parent=gene-glpK;Dbxref=GOA:Q9CB81,InterPro:IPR005999,InterPro:IPR018483,InterPro:IPR018484,InterPro:IPR018485,NCBI_GP:CAC31830.1;Name=CAC31830.1;Note=Similar to Mycobacterium tuberculosis glycerol kinase Rv3696c SW:GLPK_MYCTU (O69664) (517 aa) fasta scores: E(): 0%2C 91.5%25 id in 508 aa and Escherichia coli glycerol kinase SW:GLPK_ECOLI (P08859%3B Q59381) (501 aa) fasta scores: E(): 0%2C 51.4%25 id in 500 aa. Contains Pfam match to entry PF00370 FGGY%2C FGGY family of carbohydrate kinases. Contains PS00445 FGGY family of carbohydrate kinases signature 2. Contains PS00933 FGGY family of carbohydrate kinases signature 1.;gbkey=CDS;gene=glpK;product=glycerol kinase;protein_id=CAC31830.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2741984	2743105	.	-	.	ID=id-glpK;Note=Pfam match to entry PF00370 FGGY%2C FGGY family of carbohydrate kinases%2C score 400.50%2C E-value 1.7e-116;gbkey=misc_feature;gene=glpK
AL450380.1	EMBL	sequence_feature	2742170	2742232	.	-	.	ID=id-glpK-2;Note=PS00445 FGGY family of carbohydrate kinases signature 2;gbkey=misc_feature;gene=glpK
AL450380.1	EMBL	sequence_feature	2742893	2742931	.	-	.	ID=id-glpK-3;Note=PS00933 FGGY family of carbohydrate kinases signature 1;gbkey=misc_feature;gene=glpK
AL450380.1	EMBL	ribosome_entry_site	2743345	2743350	.	-	.	ID=id-AL450380.1:2743345..2743350;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	2743446	2744132	.	+	.	ID=gene-ML2315;Name=ML2315;gbkey=Gene;gene=ML2315;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2743446	2744132	.	+	0	ID=cds-ML2315;Parent=gene-ML2315;Note=Possible pseudogene of M. tuberculosis orthologue Rv3698 (Best blastx score 315);gbkey=CDS;gene=ML2315;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2744230	2744727	.	+	.	ID=gene-ML2316;Name=ML2316;gbkey=Gene;gene=ML2316;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2744230	2744727	.	+	0	ID=cds-ML2316;Parent=gene-ML2316;Note=Possible pseudogene of M. tuberculosis orthologue Rv3699 (Best blastx score 159);gbkey=CDS;gene=ML2316;product=Probable methyltransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2745150	2745438	.	-	.	ID=gene-ML2317;Name=ML2317;gbkey=Gene;gene=ML2317;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2745150	2745438	.	-	0	ID=cds-ML2317;Parent=gene-ML2317;Note=Possible pseudogene of M. tuberculosis orthologue Rv3700c.;gbkey=CDS;gene=ML2317;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2745521	2745649	.	-	.	ID=gene-ML2318;Name=ML2318;gbkey=Gene;gene=ML2318;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2745521	2745649	.	-	0	ID=cds-ML2318;Parent=gene-ML2318;Note=Possible pseudogene of M. tuberculosis orthologue Rv3703c (Best blastx score 169);gbkey=CDS;gene=ML2318;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2745745	2746959	.	-	.	ID=gene-gshA;Name=gshA;gbkey=Gene;gene=gshA;gene_biotype=pseudogene;gene_synonym=ML2319;pseudo=true
AL450380.1	EMBL	CDS	2745745	2746959	.	-	0	ID=cds-gshA;Parent=gene-gshA;Note=Possible pseudogene of M. tuberculosis orthologue gshA (Best blastx score 360);gbkey=CDS;gene=gshA;product=possible [gamma]-glutamylcysteine synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2747152	2747799	.	-	.	ID=gene-ML2320;Name=ML2320;gbkey=Gene;gene=ML2320;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2747152	2747799	.	-	0	ID=cds-CAC31836.1;Parent=gene-ML2320;Dbxref=InterPro:IPR026954,UniProtKB/TrEMBL:Q9CB80,NCBI_GP:CAC31836.1;Name=CAC31836.1;Note=Similar to Mycobacterium tuberculosis hypothetical 22.4 kDa protein Rv3705c TR:O69673 (EMBL:AL022121) (214 aa) fasta scores: E(): 0%2C 79.4%25 id in 214 aa.;gbkey=CDS;gene=ML2320;product=conserved hypothetical protein;protein_id=CAC31836.1;transl_table=11
AL450380.1	EMBL	gene	2750468	2751478	.	-	.	ID=gene-ML2321;Name=ML2321;gbkey=Gene;gene=ML2321;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2750468	2751478	.	-	0	ID=cds-CAC31837.1;Parent=gene-ML2321;Dbxref=InterPro:IPR025442,UniProtKB/TrEMBL:Q9CB79,NCBI_GP:CAC31837.1;Name=CAC31837.1;Note=Similar to Mycobacterium tuberculosis hypothetical 36.5 kDa protein Rv3707c TR:O69675 (EMBL:AL022121) (336 aa) fasta scores: E(): 0%2C 81.6%25 id in 332 aa%2C and to Mycobacterium smegmatis hypothetical 35.9 kDa protein in asd 3'region SW:YASD_MYCSM (P41402) (333 aa) fasta scores: E(): 0%2C 70.8%25 id in 332 aa.;gbkey=CDS;gene=ML2321;product=conserved hypothetical protein;protein_id=CAC31837.1;transl_table=11
AL450380.1	EMBL	gene	2751624	2752679	.	-	.	ID=gene-asd;Name=asd;gbkey=Gene;gene=asd;gene_biotype=protein_coding;gene_synonym=ML2322
AL450380.1	EMBL	CDS	2751624	2752679	.	-	0	ID=cds-CAC31838.1;Parent=gene-asd;Dbxref=GOA:Q9CB78,InterPro:IPR000319,InterPro:IPR000534,InterPro:IPR005986,InterPro:IPR012080,InterPro:IPR012280,InterPro:IPR016040,UniProtKB/TrEMBL:Q9CB78,NCBI_GP:CAC31838.1;Name=CAC31838.1;Note=Similar to Mycobacterium tuberculosis aspartate-semialdehyde dehydrogenase SW:DHAS_MYCTU (345 aa) fasta scores: E(): 0%2C 84.4%25 id in 347 aa%2C and to Mycobacterium bovis aspartate-semialdehyde dehydrogenase SW:DHAS_MYCBO (345 aa) fasta scores: E(): 0%2C 82.1%25 id in 347 aa. Contains Pfam match to entry PF01118 Semialdhyde_dh%2C Semialdehyde dehydrogenase. Contains PS01103 Aspartate-semialdehyde dehydrogenase signature.;gbkey=CDS;gene=asd;product=aspartate semialdehyde dehydrogenase;protein_id=CAC31838.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2751633	2752664	.	-	.	ID=id-asd;Note=Pfam match to entry PF01118 Semialdhyde_dh%2C Semialdehyde dehydrogenase%2C score 512.70%2C E-value 2.8e-150;gbkey=misc_feature;gene=asd
AL450380.1	EMBL	sequence_feature	2751891	2751935	.	-	.	ID=id-asd-2;Note=PS01103 Aspartate-semialdehyde dehydrogenase signature;gbkey=misc_feature;gene=asd
AL450380.1	EMBL	gene	2752679	2753944	.	-	.	ID=gene-ask;Name=ask;gbkey=Gene;gene=ask;gene_biotype=protein_coding;gene_synonym=ML2323
AL450380.1	EMBL	CDS	2752679	2753944	.	-	0	ID=cds-CAC31839.1;Parent=gene-ask;Dbxref=GOA:Q9CB77,InterPro:IPR001048,InterPro:IPR001341,InterPro:IPR002912,InterPro:IPR005260,InterPro:IPR018042,InterPro:IPR027795,UniProtKB/TrEMBL:Q9CB77,NCBI_GP:CAC31839.1;Name=CAC31839.1;Note=Similar to Mycobacterium tuberculosis aspartokinase ask or rv3709c or mtv025.057C SW:AK_MYCTU (P97048%3B O69676%3B P97181) (421 aa) fasta scores: E(): 0%2C 92.6%25 id in 421 aa%2C and to Mycobacterium smegmatis aspartokinase asK SW:AK_MYCSM (P41403) (421 aa) fasta scores: E(): 0%2C 85.3%25 id in 421 aa. Contains Pfam match to entry PF00696 aakinase%2C Amino acid kinase family. Contains Pfam match to entry PF01842 ACT%2C ACT domain. Contains PS00324 Aspartokinase signature.;gbkey=CDS;gene=ask;product=aspartokinase;protein_id=CAC31839.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2752922	2753149	.	-	.	ID=id-ask;Note=Pfam match to entry PF01842 ACT%2C ACT domain%2C score 51.50%2C E-value 1.8e-11;gbkey=misc_feature;gene=ask
AL450380.1	EMBL	sequence_feature	2753339	2753941	.	-	.	ID=id-ask-2;Note=Pfam match to entry PF00696 aakinase%2C Amino acid kinase family%2C score 231.90%2C E-value 9.2e-66;gbkey=misc_feature;gene=ask
AL450380.1	EMBL	sequence_feature	2753906	2753932	.	-	.	ID=id-ask-3;Note=PS00324 Aspartokinase signature;gbkey=misc_feature;gene=ask
AL450380.1	EMBL	ribosome_entry_site	2754628	2754631	.	+	.	ID=id-AL450380.1:2754628..2754631;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	2754640	2756463	.	+	.	ID=gene-leuA;Name=leuA;gbkey=Gene;gene=leuA;gene_biotype=protein_coding;gene_synonym=ML2324
AL450380.1	EMBL	CDS	2754640	2756463	.	+	0	ID=cds-CAC31840.1;Parent=gene-leuA;Dbxref=GOA:Q9CB76,InterPro:IPR000891,InterPro:IPR002034,InterPro:IPR005668,InterPro:IPR013709,InterPro:IPR013785,NCBI_GP:CAC31840.1;Name=CAC31840.1;Note=Similar to Mycobacterium tuberculosis 2-isopropylmalate synthase leuA or Rv3710 SW:LEU1_MYCTU (P96420%3B O69677) (644 aa) fasta scores: E(): 0%2C 80.7%25 id in 642 aa%2C and to Corynebacterium glutamicum 2-isopropylmalate synthase leuA SW:LEU1_CORGL (P42455) (616 aa) fasta scores: E(): 0%2C 66.8%25 id in 602 aa. Contains Pfam match to entry PF00682 HMGL-like%2C HMGL-like. Contains PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. Contains PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1.;gbkey=CDS;gene=leuA;product=2-isopropylmalate synthase;protein_id=CAC31840.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2754880	2755752	.	+	.	ID=id-leuA;Note=Pfam match to entry PF00682 HMGL-like%2C HMGL-like%2C score 330.30%2C E-value 2.2e-95;gbkey=misc_feature;gene=leuA
AL450380.1	EMBL	sequence_feature	2754883	2754933	.	+	.	ID=id-leuA-2;Note=PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1;gbkey=misc_feature;gene=leuA
AL450380.1	EMBL	sequence_feature	2755492	2755533	.	+	.	ID=id-leuA-3;Note=PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2;gbkey=misc_feature;gene=leuA
AL450380.1	EMBL	pseudogene	2756632	2757595	.	-	.	ID=gene-dnaQ;Name=dnaQ;gbkey=Gene;gene=dnaQ;gene_biotype=pseudogene;gene_synonym=ML2325;pseudo=true
AL450380.1	EMBL	CDS	2756632	2757595	.	-	0	ID=cds-dnaQ;Parent=gene-dnaQ;Note=Possible pseudogene of M. tuberculosis orthologue dnaQ (Best blastx score 453);gbkey=CDS;gene=dnaQ;product=DNA polymerase III [epsilon] chain (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2757741	2758976	.	+	.	ID=gene-ML2326;Name=ML2326;gbkey=Gene;gene=ML2326;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2757741	2758976	.	+	0	ID=cds-CAC31842.1;Parent=gene-ML2326;Dbxref=GOA:Q7APW6,InterPro:IPR013221,InterPro:IPR013564,UniProtKB/TrEMBL:Q7APW6,NCBI_GP:CAC31842.1;Name=CAC31842.1;Note=Similar to several MurCDEF-family proteins e.g. Mycobacterium tuberculosis UDP-N-acetylmuramate--alanine ligase Rv2152c SW:MURC_MYCTU (O06225) (494 aa) fasta scores: E(): 0.0013%2C 25.6%25 id in 387 aa. Also highly similar to Mycobacterium tuberculosis hypothetical 43.4 kDa protein Rv3712 TR:O69679 (EMBL:AL022121) (413 aa) fasta scores: E(): 0%2C 84.3%25 id in 413 aa. Contains Pfam match to entry PF01225 Mur_ligase%2C Mur ligase family.;gbkey=CDS;gene=ML2326;product=possible ligase;protein_id=CAC31842.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2757897	2758655	.	+	.	ID=id-ML2326;Note=Pfam match to entry PF01225 Mur_ligase%2C Mur ligase family%2C score 34.60%2C E-value 3.1e-09;gbkey=misc_feature;gene=ML2326
AL450380.1	EMBL	gene	2758984	2759676	.	+	.	ID=gene-ML2327;Name=ML2327;gbkey=Gene;gene=ML2327;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2758984	2759676	.	+	0	ID=cds-CAC31843.1;Parent=gene-ML2327;Dbxref=GOA:Q7APW5,InterPro:IPR011698,InterPro:IPR017929,InterPro:IPR029062,UniProtKB/TrEMBL:Q7APW5,NCBI_GP:CAC31843.1;Name=CAC31843.1;Note=Similar to Mycobacterium tuberculosis hypothetical 24.2 kDa protein Rv3713 TR:O69680 (EMBL:AL022121) (231 aa) fasta scores: E(): 0%2C 86.5%25 id in 230 aa. Also weakly similar to several cobyrinic acid a%2Cc-diamide synthases e.g. Pseudomonas denitrificans cobB SW:COBB_PSEDE (P21632) (433 aa) fasta scores: E(): 0.0027%2C 30.7%25 id in 166 aa. Contains Pfam match to entry PF01656 CBIA%2C Cobyrinic acid a%2Cc-diamide synthase.;gbkey=CDS;gene=ML2327;product=conserved hypothetical protein;protein_id=CAC31843.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2758993	2759673	.	+	.	ID=id-ML2327;Note=Pfam match to entry PF01656 CBIA%2C Cobyrinic acid a%2Cc-diamide synthase%2C score 175.10%2C E-value 1.2e-48;gbkey=misc_feature;gene=ML2327
AL450380.1	EMBL	pseudogene	2759837	2760408	.	-	.	ID=gene-ML2328;Name=ML2328;gbkey=Gene;gene=ML2328;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2759837	2760408	.	-	0	ID=cds-ML2328;Parent=gene-ML2328;Note=Possible pseudogene of M. tuberculosis orthologue Rv3714c;gbkey=CDS;gene=ML2328;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2760630	2761241	.	-	.	ID=gene-recR;Name=recR;gbkey=Gene;gene=recR;gene_biotype=protein_coding;gene_synonym=ML2329
AL450380.1	EMBL	CDS	2760630	2761241	.	-	0	ID=cds-CAC31845.1;Parent=gene-recR;Dbxref=GOA:O69520,InterPro:IPR000093,InterPro:IPR003583,InterPro:IPR006171,InterPro:IPR015967,InterPro:IPR023627,InterPro:IPR023628,NCBI_GP:CAC31845.1;Name=CAC31845.1;Note=Highly similar to many recombinational DNA repair RecR orthologues e.g. Mycobacterium tuberculosis Rv3715c SW:RECR_MYCTU (O69682) (203 aa) fasta scores: E(): 0%2C 91.1%25 id in 202 aa and Bacillus subtilis recombination protein SW:RECR_BACSU (P24277) (198 aa) fasta scores: E(): 0%2C 51.5%25 id in 198 aa. Contains Pfam match to entry PF02132 RecR%2C RecR protein. Contains Pfam match to entry PF01751 Toprim%2C Toprim domain. Contains PS01300 RecR protein signature.;gbkey=CDS;gene=recR;product=DNA repair protein;protein_id=CAC31845.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2760711	2761007	.	-	.	ID=id-recR;Note=Pfam match to entry PF01751 Toprim%2C Toprim domain%2C score 66.40%2C E-value 6.2e-16;gbkey=misc_feature;gene=recR
AL450380.1	EMBL	sequence_feature	2761008	2761133	.	-	.	ID=id-recR-2;Note=Pfam match to entry PF02132 RecR%2C RecR protein%2C score 70.30%2C E-value 3.9e-17;gbkey=misc_feature;gene=recR
AL450380.1	EMBL	sequence_feature	2761014	2761076	.	-	.	ID=id-recR-3;Note=PS01300 RecR protein signature;gbkey=misc_feature;gene=recR
AL450380.1	EMBL	gene	2761253	2761603	.	-	.	ID=gene-ML2330;Name=ML2330;gbkey=Gene;gene=ML2330;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2761253	2761603	.	-	0	ID=cds-CAC31846.1;Parent=gene-ML2330;Dbxref=GOA:O69519,InterPro:IPR004401,NCBI_GP:CAC31846.1;Name=CAC31846.1;Note=Highly similar to several proteins of undefined function including: Mycobacterium tuberculosis hypothetical protein Rv3716c TR:O69683 (EMBL:AL022121) (133 aa) fasta scores: E(): 4e-27%2C 83.7%25 id in 104 aa%2C and Escherichia coli hypothetical 12.0 kDa protein SW:YBAB_ECOLI (P17577%3B P09994) (109 aa) fasta scores: E(): 9.7e-08%2C 35.0%25 id in 100 aa. Note the N-terminus is rich in the amino acid Gln.;gbkey=CDS;gene=ML2330;product=conserved hypothetical protein;protein_id=CAC31846.1;transl_table=11
AL450380.1	EMBL	gene	2761703	2762473	.	+	.	ID=gene-ML2331;Name=ML2331;gbkey=Gene;gene=ML2331;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2761703	2762473	.	+	0	ID=cds-CAC31847.1;Parent=gene-ML2331;Dbxref=GOA:Q9CB75,InterPro:IPR002508,UniProtKB/TrEMBL:Q9CB75,NCBI_GP:CAC31847.1;Name=CAC31847.1;Note=Similar to Mycobacterium tuberculosis hypothetical 24.8 kDa protein Rv3717 TR:O69684 (EMBL:AL022121) (241 aa) fasta scores: E(): 0%2C 82.0%25 id in 244 aa%2C and to Streptomyces coelicolor putative secreted protein TR:CAB93433 (EMBL:AL357591) (336 aa) fasta scores: E(): 1.5e-24%2C 38.8%25 id in 242 aa. Note contains a Pfam match to PF01520 N-acetylmuramoyl-L-alanine amidase. Contains Pfam match to entry PF01520 Amidase_3%2C N-acetylmuramoyl-L-alanine amidase. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=ML2331;product=possible secreted protein;protein_id=CAC31847.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2762075	2762452	.	+	.	ID=id-ML2331;Note=Pfam match to entry PF01520 Amidase_3%2C N-acetylmuramoyl-L-alanine amidase%2C score -1.10%2C E-value 0.00088;gbkey=misc_feature;gene=ML2331
AL450380.1	EMBL	gene	2762489	2762926	.	-	.	ID=gene-ML2332;Name=ML2332;gbkey=Gene;gene=ML2332;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2762489	2762926	.	-	0	ID=cds-CAC31848.1;Parent=gene-ML2332;Dbxref=InterPro:IPR014488,InterPro:IPR019587,InterPro:IPR023393,UniProtKB/TrEMBL:Q7APW4,NCBI_GP:CAC31848.1;Name=CAC31848.1;Note=Similar to Mycobacterium tuberculosis hypothetical 15.7 kDa protein Rv3718c TR:O69685 (EMBL:AL022121) (147 aa) fasta scores: E(): 0%2C 81.9%25 id in 144 aa and Streptomyces coelicolor conserved hypothetical protein TR:Q9ZBJ2 (EMBL:AL035161) (147 aa) fasta scores: E(): 1.4e-22%2C 47.6%25 id in 147 aa.;gbkey=CDS;gene=ML2332;product=conserved hypothetical protein;protein_id=CAC31848.1;transl_table=11
AL450380.1	EMBL	gene	2763015	2764394	.	+	.	ID=gene-ML2333;Name=ML2333;gbkey=Gene;gene=ML2333;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2763015	2764394	.	+	0	ID=cds-CAC31849.1;Parent=gene-ML2333;Dbxref=GOA:Q7APW3,InterPro:IPR006094,InterPro:IPR016164,InterPro:IPR016166,InterPro:IPR016169,UniProtKB/TrEMBL:Q7APW3,NCBI_GP:CAC31849.1;Name=CAC31849.1;Note=Similar to Mycobacterium tuberculosis hypothetical 53.0 kDa protein Rv3719 TR:O69686 (EMBL:AL022121) (470 aa) fasta scores: E(): 0%2C 82.8%25 id in 458 aa.;gbkey=CDS;gene=ML2333;product=conserved hypothetical protein;protein_id=CAC31849.1;transl_table=11
AL450380.1	EMBL	gene	2764448	2765710	.	+	.	ID=gene-ML2334;Name=ML2334;gbkey=Gene;gene=ML2334;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2764448	2765710	.	+	0	ID=cds-CAC31850.1;Parent=gene-ML2334;Dbxref=GOA:Q9CB74,InterPro:IPR003333,InterPro:IPR029063,UniProtKB/TrEMBL:Q9CB74,NCBI_GP:CAC31850.1;Name=CAC31850.1;Note=Similar to Mycobacterium tuberculosis hypothetical 46.9 kDa protein Rv3720 TR:O69687 (EMBL:AL022121) (420 aa) fasta scores: E(): 0%2C 86.4%25 id in 420 aa. The C-terminus is similar to several proteins involved in cyclopropane-fatty-acyl-phospholipid synthesis e.g. Escherichia coli SW:CFA_ECOLI (P30010) (381 aa) fasta scores: E(): 1.3e-27%2C 34.5%25 id in 278 aa. Contains PS00107 Protein kinases ATP-binding region signature.;gbkey=CDS;gene=ML2334;product=hypothetical protein;protein_id=CAC31850.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2765039	2765140	.	+	.	ID=id-ML2334;Note=PS00107 Protein kinases ATP-binding region signature;gbkey=misc_feature;gene=ML2334
AL450380.1	EMBL	gene	2765707	2767542	.	-	.	ID=gene-dnaZX;Name=dnaZX;gbkey=Gene;gene=dnaZX;gene_biotype=protein_coding;gene_synonym=ML2335
AL450380.1	EMBL	CDS	2765707	2767542	.	-	0	ID=cds-CAC31851.1;Parent=gene-dnaZX;Dbxref=GOA:Q7APW2,InterPro:IPR003593,InterPro:IPR008921,InterPro:IPR012763,InterPro:IPR022754,InterPro:IPR027417,UniProtKB/TrEMBL:Q7APW2,NCBI_GP:CAC31851.1;Name=CAC31851.1;Note=Highly similar to many DNA polymerase III subunit gamma/tau including: Mycobacterium tuberculosis DnaZX Rv3721c SW:DP3X_MYCTU (O69688) (578 aa) fasta scores: E(): 0%2C 78.7%25 id in 602 aa and to Escherichia coli SW:DP3X_ECOLI (P06710%3B Q47721) (643 aa) fasta scores: E(): 0%2C 34.2%25 id in 521 aa. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=dnaZX;product=DNA polymerase III%2C subunit [gamma/tau];protein_id=CAC31851.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2767396	2767419	.	-	.	ID=id-dnaZX;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=dnaZX
AL450380.1	EMBL	gene	2767652	2769043	.	-	.	ID=gene-ML2336;Name=ML2336;gbkey=Gene;gene=ML2336;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2767652	2769043	.	-	0	ID=cds-CAC31852.1;Parent=gene-ML2336;Dbxref=GOA:Q9CB73,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR024551,UniProtKB/TrEMBL:Q9CB73,NCBI_GP:CAC31852.1;Name=CAC31852.1;Note=Similar to Mycobacterium tuberculosis hypothetical 44.4 kDa protein Rv3722c TR:O69689 (EMBL:AL022121) (408 aa) fasta scores: E(): 0%2C 87.6%25 id in 396 aa%2C and to Deinococcus radiodurans conserved hypothetical protein TR:Q9RU17 (EMBL:AE002001) (452 aa) fasta scores: E(): 0%2C 43.1%25 id in 450 aa.;gbkey=CDS;gene=ML2336;product=conserved hypothetical protein;protein_id=CAC31852.1;transl_table=11
AL450380.1	EMBL	gene	2769253	2769338	.	+	.	ID=gene-serV;Name=serV;gbkey=Gene;gene=serV;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	2769253	2769338	.	+	.	ID=rna-serV;Parent=gene-serV;Note=tRNA Ser anticodon GGA%2C Cove score 57.12;gbkey=tRNA;gene=serV;product=tRNA-Ser
AL450380.1	EMBL	exon	2769253	2769338	.	+	.	ID=exon-serV-1;Parent=rna-serV;Note=tRNA Ser anticodon GGA%2C Cove score 57.12;gbkey=tRNA;gene=serV;product=tRNA-Ser
AL450380.1	EMBL	gene	2769442	2770194	.	+	.	ID=gene-ML2337;Name=ML2337;gbkey=Gene;gene=ML2337;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2769442	2770194	.	+	0	ID=cds-CAC31853.1;Parent=gene-ML2337;Dbxref=UniProtKB/TrEMBL:Q7APW1,NCBI_GP:CAC31853.1;Name=CAC31853.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv3723 TR:O69690 (EMBL:AL022121) (254 aa) fasta scores: E(): 0%2C 64.4%25 id in 253 aa. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2337;product=putative membrane protein;protein_id=CAC31853.1;transl_table=11
AL450380.1	EMBL	pseudogene	2772784	2773827	.	-	.	ID=gene-lipD;Name=lipD;gbkey=Gene;gene=lipD;gene_biotype=pseudogene;gene_synonym=ML2338;pseudo=true
AL450380.1	EMBL	CDS	2772784	2773827	.	-	0	ID=cds-lipD;Parent=gene-lipD;Note=Possible pseudogene of M. tuberculosis orthologue lipD (Best blastx score 246);gbkey=CDS;gene=lipD;product=probable esterase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2774269	2774816	.	+	.	ID=gene-ML2339;Name=ML2339;gbkey=Gene;gene=ML2339;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2774269	2774816	.	+	0	ID=cds-ML2339;Parent=gene-ML2339;Note=Possible pseudogene of M. tuberculosis orthologue Rv3724 (Best blastx score 340);gbkey=CDS;gene=ML2339;product=probable cutinase precursor (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2775365	2778518	.	+	.	ID=gene-ML2340;Name=ML2340;gbkey=Gene;gene=ML2340;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2775365	2778518	.	+	0	ID=cds-ML2340;Parent=gene-ML2340;Note=Possible pseudogene of M. tuberculosis orthologue Rv3728 (Best blastx score 386);gbkey=CDS;gene=ML2340;product=possible sugar transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2779477	2781675	.	-	.	ID=gene-ML2341;Name=ML2341;gbkey=Gene;gene=ML2341;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2779477	2781675	.	-	0	ID=cds-CAC31857.1;Parent=gene-ML2341;Dbxref=GOA:Q9CB72,InterPro:IPR001054,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR029787,UniProtKB/TrEMBL:Q9CB72,NCBI_GP:CAC31857.1;Name=CAC31857.1;Note=The N-terminus of the predicted product of this CDS is similar to many adenylate cyclases e.g. Stigmatella aurantiaca adenylate cyclase 2 CyaB SW:CYAB_STIAU (P40138%3B O54080) (352 aa) fasta scores: E(): 3.8e-07%2C 35.9%25 id in 192 aa. The C-terminus is similar to many proteins of undefined function and to several proposed regulatory proteins e.g. Streptomyces coelicolor putative regulatory protein TR:Q9Z573 (EMBL:AL035569) (194 aa)%3B BlastP Expect 6.1. Contains Pfam match to entry PF00211 guanylate_cyc%2C Adenylate and Guanylate cyclase catalytic domain. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML2341;product=possible regulatory protein;protein_id=CAC31857.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2780869	2780892	.	-	.	ID=id-ML2341;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML2341
AL450380.1	EMBL	sequence_feature	2781100	2781582	.	-	.	ID=id-ML2341-2;Note=Pfam match to entry PF00211 guanylate_cyc%2C Adenylate and Guanylate cyclase catalytic domain%2C score 95.70%2C E-value 9e-25;gbkey=misc_feature;gene=ML2341
AL450380.1	EMBL	pseudogene	2781962	2782717	.	-	.	ID=gene-ML2342;Name=ML2342;gbkey=Gene;gene=ML2342;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2781962	2782717	.	-	0	ID=cds-ML2342;Parent=gene-ML2342;Note=Possible pseudogene of M. tuberculosis orthologue Rv3730c (Best blastx score 278);gbkey=CDS;gene=ML2342;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2782748	2782975	.	+	.	ID=gene-ansA1;Name=ansA1;gbkey=Gene;gene=ansA1;gene_biotype=pseudogene;gene_synonym=ML2343;pseudo=true
AL450380.1	EMBL	CDS	2782748	2782975	.	+	0	ID=cds-ansA1;Parent=gene-ansA1;Note=Possible pseudogene of M. tuberculosis orthologue ansA (Best blastx score 107);gbkey=CDS;gene=ansA1;product=L-asparaginase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2784593	2785364	.	-	.	ID=gene-ML2344;Name=ML2344;gbkey=Gene;gene=ML2344;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2784593	2785364	.	-	0	ID=cds-ML2344;Parent=gene-ML2344;Note=Possible pseudogene of M. tuberculosis orthologue Rv1200 (Best blastx score 189);gbkey=CDS;gene=ML2344;product=probable sugar transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2785433	2785495	.	+	.	ID=id-AL450380.1:2785433..2785495;Note=21 copies of triplet repeat%2C GAA;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2786390	2786807	.	+	.	ID=gene-ML2345;Name=ML2345;gbkey=Gene;gene=ML2345;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2786390	2786807	.	+	0	ID=cds-ML2345;Parent=gene-ML2345;Note=Possible pseudogene of M. tuberculosis orthologue Rv3676 (Best blastx score 204);gbkey=CDS;gene=ML2345;product=transcriptional regulator (Crp/Fnr family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2787096	2788001	.	-	.	ID=gene-ML2346;Name=ML2346;gbkey=Gene;gene=ML2346;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2787096	2788001	.	-	0	ID=cds-CAC31862.1;Parent=gene-ML2346;Dbxref=InterPro:IPR006342,InterPro:IPR029063,UniProtKB/TrEMBL:Q49942,NCBI_GP:CAC31862.1;Name=CAC31862.1;Note=function unknown. Note the G+C content of this CDS (54%25).;gbkey=CDS;gene=ML2346;product=hypothetical protein;protein_id=CAC31862.1;transl_table=11
AL450380.1	EMBL	gene	2788300	2789310	.	+	.	ID=gene-ML2347;Name=ML2347;gbkey=Gene;gene=ML2347;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2788300	2789310	.	+	0	ID=cds-CAC31863.1;Parent=gene-ML2347;Dbxref=InterPro:IPR029063,UniProtKB/TrEMBL:Q7APW0,NCBI_GP:CAC31863.1;Name=CAC31863.1;Note=function unknown. Note the low G+C content of this CDS (46%25). Contains a possible membrane spanning hydrophobic domain.;gbkey=CDS;gene=ML2347;product=putative membrane protein;protein_id=CAC31863.1;transl_table=11
AL450380.1	EMBL	gene	2789501	2790766	.	+	.	ID=gene-ML2348;Name=ML2348;gbkey=Gene;gene=ML2348;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2789501	2790766	.	+	0	ID=cds-CAC31864.1;Parent=gene-ML2348;Dbxref=GOA:Q49929,InterPro:IPR002213,InterPro:IPR004276,NCBI_GP:CAC31864.1;Name=CAC31864.1;Note=Similar to many proposed glycosyl transferases including: Mycobacterium tuberculosis hypothetical protein Rv1524 SW:YF24_MYCTU (Q50583) (414 aa) fasta scores: E(): 0%2C 62.6%25 id in 420 aa%2C and to Mycobacterium avium rhamnosyltransferase RtfA TR:O69000 (EMBL:AF060183) (428 aa) fasta scores: E(): 0%2C 55.0%25 id in 424 aa.;gbkey=CDS;gene=ML2348;product=putative glycosyl transferase;protein_id=CAC31864.1;transl_table=11
AL450380.1	EMBL	gene	2790912	2792183	.	-	.	ID=gene-ML2349;Name=ML2349;gbkey=Gene;gene=ML2349;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2790912	2792183	.	-	0	ID=cds-CAC31865.1;Parent=gene-ML2349;Dbxref=GOA:Q49939,InterPro:IPR001242,NCBI_GP:CAC31865.1;Name=CAC31865.1;Note=Similar to proteins found adjacent to polyketide biosynthetic operons from Mycobacterium tuberculosis hypothetical protein Rv2939 TR:P96208 (EMBL:Z83857) (422 aa) fasta scores: E(): 0%2C 83.8%25 id in 426 aa and Mycobacterium bovis hypothetical protein SW:YMA3_MYCBO (Q02279) (354 aa) fasta scores: E(): 0%2C 81.6%25 id in 347 aa.;gbkey=CDS;gene=ML2349;product=conserved hypothetical protein;protein_id=CAC31865.1;transl_table=11
AL450380.1	EMBL	gene	2792232	2793062	.	-	.	ID=gene-ML2350;Name=ML2350;gbkey=Gene;gene=ML2350;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2792232	2793062	.	-	0	ID=cds-CAC31866.1;Parent=gene-ML2350;Dbxref=GOA:Q9CB71,InterPro:IPR000412,InterPro:IPR004377,InterPro:IPR005943,InterPro:IPR013525,UniProtKB/TrEMBL:Q9CB71,NCBI_GP:CAC31866.1;Name=CAC31866.1;Note=Similar to several antibiotic resistant proteins including: Mycobacterium tuberculosis rv2938 TR:P96207 (EMBL:Z83857) (276 aa) fasta scores: E(): 0%2C 79.0%25 id in 276 aa and Streptomyces peucetius daunorubicin resistance transmembrane protein DrrB SW:DRRB_STRPE (P32011) (283 aa) fasta scores: E(): 2.7e-11%2C 23.8%25 id in 252 aa. Contains possible membrane spanning hydrophobic domains.%3B~Similar to the adjoining CDS ML2351;gbkey=CDS;gene=ML2350;product=probable antibiotic resistance membrane protein;protein_id=CAC31866.1;transl_table=11
AL450380.1	EMBL	gene	2793059	2793925	.	-	.	ID=gene-ML2351;Name=ML2351;gbkey=Gene;gene=ML2351;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2793059	2793925	.	-	0	ID=cds-CAC31867.1;Parent=gene-ML2351;Dbxref=GOA:Q49935,InterPro:IPR000412,InterPro:IPR004377,UniProtKB/TrEMBL:Q49935,NCBI_GP:CAC31867.1;Name=CAC31867.1;Note=Similar to several antibiotic resistant proteins including: Mycobacterium tuberculosis Rv2937 TR:P96206 (EMBL:Z83857) (289 aa) fasta scores: E(): 0%2C 64.0%25 id in 289 aa and Streptomyces peucetius daunorubicin resistance transmembrane protein DrrB SW:DRRB_STRPE (P32011) (283 aa) fasta scores: E(): 4.2e-06%2C 22.7%25 id in 229 aa. Contains possible membrane spanning hydrophobic domains.%3B~Similar to the adjoining CDS ML2350;gbkey=CDS;gene=ML2351;product=probable antibiotic resistance membrane protein;protein_id=CAC31867.1;transl_table=11
AL450380.1	EMBL	gene	2793922	2794917	.	-	.	ID=gene-ML2352;Name=ML2352;gbkey=Gene;gene=ML2352;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2793922	2794917	.	-	0	ID=cds-CAC31868.1;Parent=gene-ML2352;Dbxref=GOA:Q49938,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR005894,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q49938,NCBI_GP:CAC31868.1;Name=CAC31868.1;Note=Similar to several antibiotic resistant proteins including: Mycobacterium tuberculosis Rv2936 TR:P96205 (EMBL:Z83857) (331 aa) fasta scores: E(): 0%2C 85.2%25 id in 331 aa and Streptomyces peucetius daunorubicin resistance ATP-binding protein DrrA SW:DRRA_STRPE (P32010) (330 aa) fasta scores: E(): 0%2C 46.0%25 id in 322 aa. Contains Pfam match to entry PF00005 ABC_tran%2C ABC transporter. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00211 ABC transporters family signature.;gbkey=CDS;gene=ML2352;product=probable antibiotic resistance efflux protein;protein_id=CAC31868.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2794270	2794815	.	-	.	ID=id-ML2352;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 191.80%2C E-value 1.1e-53;gbkey=misc_feature;gene=ML2352
AL450380.1	EMBL	sequence_feature	2794453	2794497	.	-	.	ID=id-ML2352-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=ML2352
AL450380.1	EMBL	sequence_feature	2794771	2794794	.	-	.	ID=id-ML2352-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML2352
AL450380.1	EMBL	ribosome_entry_site	2794923	2794928	.	-	.	ID=id-AL450380.1:2794923..2794928;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	2794928	2799397	.	-	.	ID=gene-ML2353;Name=ML2353;gbkey=Gene;gene=ML2353;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2794928	2799397	.	-	0	ID=cds-CAC31869.1;Parent=gene-ML2353;Dbxref=GOA:Q49934,InterPro:IPR001227,InterPro:IPR001242,InterPro:IPR009081,InterPro:IPR014030,InterPro:IPR014031,InterPro:IPR014043,InterPro:IPR016035,InterPro:IPR016036,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR018201,InterPro:IPR020801,UniProtKB/TrEMBL:Q49934,NCBI_GP:CAC31869.1;Name=CAC31869.1;Note=Similar to many polyketide synthases e.g. Mycobacterium tuberculosis Rv2935 TR:P96204 (EMBL:Z83857) (1488 aa) fasta scores: E(): 0%2C 82.0%25 id in 1493 aa. Contains Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase. Contains Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain. Contains Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site. Contains PS00606 Beta-ketoacyl synthases active site.%3B~Similar to ML2355%2C ML0139%2C ML0135%2C ML2354%2C ML2356%2C ML2357%2C ML1229 and ML0101;gbkey=CDS;gene=ML2353;product=polyketide synthase;protein_id=CAC31869.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2796395	2796586	.	-	.	ID=id-ML2353;Note=Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site%2C score 63.10%2C E-value 8.1e-16;gbkey=misc_feature;gene=ML2353
AL450380.1	EMBL	sequence_feature	2796785	2797756	.	-	.	ID=id-ML2353-2;Note=Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain%2C score 199.50%2C E-value 5.2e-56;gbkey=misc_feature;gene=ML2353
AL450380.1	EMBL	sequence_feature	2798081	2799376	.	-	.	ID=id-ML2353-3;Note=Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase%2C score 460.60%2C E-value 1.3e-134;gbkey=misc_feature;gene=ML2353
AL450380.1	EMBL	sequence_feature	2798825	2798875	.	-	.	ID=id-ML2353-4;Note=PS00606 Beta-ketoacyl synthases active site;gbkey=misc_feature;gene=ML2353
AL450380.1	EMBL	gene	2799404	2804872	.	-	.	ID=gene-ML2354;Name=ML2354;gbkey=Gene;gene=ML2354;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2799404	2804872	.	-	0	ID=cds-CAC31870.1;Parent=gene-ML2354;Dbxref=GOA:Q9CB70,InterPro:IPR001227,InterPro:IPR006162,InterPro:IPR009081,InterPro:IPR013968,InterPro:IPR014030,InterPro:IPR014031,InterPro:IPR014043,InterPro:IPR016035,InterPro:IPR016036,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR016040,InterPro:IPR018201,InterPro:IPR020801,InterPro:IPR020806,InterPro:IPR020807,InterPro:IPR020841,InterPro:IPR020842,UniProtKB/TrEMBL:Q9CB70,NCBI_GP:CAC31870.1;Name=CAC31870.1;Note=Similar to many polyketide synthases e.g.Mycobacterium tuberculosis Rv2934 TR:P96203 (EMBL:Z83857) (1827 aa) fasta scores: E(): 0%2C 80.3%25 id in 1836 aa%2C and to Mycobacterium bovis mycocerosic acid synthase SW:MCAS_MYCBO (Q02251) (2110 aa) fasta scores: E(): 0%2C 32.7%25 id in 2136 aa. Contains Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase. Contains Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain. Contains Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site. Contains PS00012 Phosphopantetheine attachment site. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00606 Beta-ketoacyl synthases active site.%3B~Similar to ML2353%2C ML2355%2C ML0139%2C ML0135%2C ML2354%2C ML2356%2C ML2357%2C ML1229 and ML0101;gbkey=CDS;gene=ML2354;product=polyketide synthase;protein_id=CAC31870.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2799545	2799748	.	-	.	ID=id-ML2354;Note=Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site%2C score 37.50%2C E-value 9.7e-09;gbkey=misc_feature;gene=ML2354
AL450380.1	EMBL	sequence_feature	2799623	2799670	.	-	.	ID=id-ML2354-2;Note=PS00012 Phosphopantetheine attachment site;gbkey=misc_feature;gene=ML2354
AL450380.1	EMBL	sequence_feature	2802227	2803186	.	-	.	ID=id-ML2354-3;Note=Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain%2C score 376.70%2C E-value 2.3e-109;gbkey=misc_feature;gene=ML2354
AL450380.1	EMBL	sequence_feature	2803424	2803447	.	-	.	ID=id-ML2354-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML2354
AL450380.1	EMBL	sequence_feature	2803496	2804761	.	-	.	ID=id-ML2354-5;Note=Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase%2C score 669.60%2C E-value 1.6e-197;gbkey=misc_feature;gene=ML2354
AL450380.1	EMBL	sequence_feature	2804231	2804281	.	-	.	ID=id-ML2354-6;Note=PS00606 Beta-ketoacyl synthases active site;gbkey=misc_feature;gene=ML2354
AL450380.1	EMBL	gene	2804869	2811474	.	-	.	ID=gene-ML2355;Name=ML2355;gbkey=Gene;gene=ML2355;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2804869	2811474	.	-	0	ID=cds-CAC31871.1;Parent=gene-ML2355;Dbxref=GOA:Q49933,InterPro:IPR001227,InterPro:IPR006162,InterPro:IPR009081,InterPro:IPR011032,InterPro:IPR013149,InterPro:IPR013154,InterPro:IPR013968,InterPro:IPR014030,InterPro:IPR014031,InterPro:IPR014043,InterPro:IPR016035,InterPro:IPR016036,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR016040,InterPro:IPR018201,InterPro:IPR020801,InterPro:IPR020806,InterPro:IPR020807,InterPro:IPR020841,InterPro:IPR020842,InterPro:IPR020843,UniProtKB/TrEMBL:Q49933,NCBI_GP:CAC31871.1;Name=CAC31871.1;Note=Similar to several polyketide synthases e.g. Mycobacterium tuberculosis Rv2933 TR:P96202 (EMBL:Z83857) (2188 aa) fasta scores: E(): 0%2C 82.3%25 id in 2217 aa. Contains Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase. Contains Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases. Contains Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain. Contains Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site. Contains PS00012 Phosphopantetheine attachment site. Contains PS00133 Zinc carboxypeptidases. Contains PS00606 Beta-ketoacyl synthases active site.%3B~Similar to ML2353%2C ML2354%2C ML0139%2C ML0135%2C ML2354%2C ML2356%2C ML2357%2C ML1229 and ML0101;gbkey=CDS;gene=ML2355;product=polyketide synthase;protein_id=CAC31871.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2805013	2805210	.	-	.	ID=id-ML2355;Note=Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site%2C score 57.80%2C E-value 2.3e-14;gbkey=misc_feature;gene=ML2355
AL450380.1	EMBL	sequence_feature	2805091	2805138	.	-	.	ID=id-ML2355-2;Note=PS00012 Phosphopantetheine attachment site;gbkey=misc_feature;gene=ML2355
AL450380.1	EMBL	sequence_feature	2806090	2806122	.	-	.	ID=id-ML2355-3;Note=PS00133 Zinc carboxypeptidases;gbkey=misc_feature;gene=ML2355
AL450380.1	EMBL	sequence_feature	2806099	2807067	.	-	.	ID=id-ML2355-4;Note=Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases%2C score 29.70%2C E-value 2.4e-11;gbkey=misc_feature;gene=ML2355
AL450380.1	EMBL	sequence_feature	2808769	2809755	.	-	.	ID=id-ML2355-5;Note=Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain%2C score 440.50%2C E-value 1.5e-128;gbkey=misc_feature;gene=ML2355
AL450380.1	EMBL	sequence_feature	2810074	2811366	.	-	.	ID=id-ML2355-6;Note=Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase%2C score 680.00%2C E-value 1.2e-200;gbkey=misc_feature;gene=ML2355
AL450380.1	EMBL	sequence_feature	2810824	2810874	.	-	.	ID=id-ML2355-7;Note=PS00606 Beta-ketoacyl synthases active site;gbkey=misc_feature;gene=ML2355
AL450380.1	EMBL	gene	2811471	2816093	.	-	.	ID=gene-ML2356;Name=ML2356;gbkey=Gene;gene=ML2356;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2811471	2816093	.	-	0	ID=cds-CAC31872.1;Parent=gene-ML2356;Dbxref=GOA:Q7APV9,InterPro:IPR001227,InterPro:IPR009081,InterPro:IPR013968,InterPro:IPR014030,InterPro:IPR014031,InterPro:IPR014043,InterPro:IPR016035,InterPro:IPR016036,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR016040,InterPro:IPR018201,InterPro:IPR020801,InterPro:IPR020806,InterPro:IPR020841,UniProtKB/TrEMBL:Q7APV9,NCBI_GP:CAC31872.1;Name=CAC31872.1;Note=Similar to many polyketide synthases including: Mycobacterium tuberculosis phenolpthiocerol synthesis polyketide synthase Rv2932 SW:PPSB_MYCTU (Q10978%3B O53234) (1538 aa) fasta scores: E(): 0%2C 76.3%25 id in 1561 aa and Mycobacterium bovis mycocerosic acid synthase SW:MCAS_MYCBO (Q02251) (2110 aa) fasta scores: E(): 0%2C 42.2%25 id in 879 aa. Contains Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase. Contains Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain. Contains Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site. Contains PS00606 Beta-ketoacyl synthases active site.%3B~Similar to ML2353%2C ML2354%2C ML0139%2C ML0135%2C ML2354%2C ML2355%2C ML2357%2C ML1229 and ML0101;gbkey=CDS;gene=ML2356;product=polyketide synthase;protein_id=CAC31872.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2811600	2811803	.	-	.	ID=id-ML2356;Note=Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site%2C score 42.90%2C E-value 3e-10;gbkey=misc_feature;gene=ML2356
AL450380.1	EMBL	sequence_feature	2813469	2814410	.	-	.	ID=id-ML2356-2;Note=Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain%2C score 467.80%2C E-value 8.8e-137;gbkey=misc_feature;gene=ML2356
AL450380.1	EMBL	sequence_feature	2814717	2815991	.	-	.	ID=id-ML2356-3;Note=Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase%2C score 694.90%2C E-value 3.8e-205;gbkey=misc_feature;gene=ML2356
AL450380.1	EMBL	sequence_feature	2815461	2815511	.	-	.	ID=id-ML2356-4;Note=PS00606 Beta-ketoacyl synthases active site;gbkey=misc_feature;gene=ML2356
AL450380.1	EMBL	repeat_region	2813398	2814788	.	-	.	ID=id-ML2356-5;Note=1391 bp repeat%2C 100%25 identical to region 2818807..2820197;gbkey=repeat_region;gene=ML2356
AL450380.1	EMBL	repeat_region	2814882	2814996	.	-	.	ID=id-ML2356-6;Note=115 bp repeat%2C 97%25 identical to region 2820282..2820396;gbkey=repeat_region;gene=ML2356
AL450380.1	EMBL	gene	2816094	2821709	.	-	.	ID=gene-ML2357;Name=ML2357;gbkey=Gene;gene=ML2357;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2816094	2821709	.	-	0	ID=cds-CAC31873.1;Parent=gene-ML2357;Dbxref=GOA:Q7APV8,InterPro:IPR001227,InterPro:IPR006162,InterPro:IPR009081,InterPro:IPR013968,InterPro:IPR014030,InterPro:IPR014031,InterPro:IPR014043,InterPro:IPR016035,InterPro:IPR016036,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR016040,InterPro:IPR018201,InterPro:IPR020801,InterPro:IPR020806,InterPro:IPR020841,InterPro:IPR020842,UniProtKB/TrEMBL:Q7APV8,NCBI_GP:CAC31873.1;Name=CAC31873.1;Note=Highly similar to many Prokaryotic and Eukaryotic polyketide synthases including: Mycobacterium tuberculosis phenolpthiocerol synthase rv2931 SW:PPSA_MYCTU (Q10977) (1876 aa) fasta scores: E(): 0%2C 76.1%25 id in 1888 aa and to Penicillium patulum 6-methylsalicylic acid synthase SW:MSAS_PENPA (P22367) (1774 aa) fasta scores: E(): 0%2C 33.8%25 id in 1823 aa. Contains Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase. Contains Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain. Contains 2 Pfam matches to entry PF00550 pp-binding%2C Phosphopantetheine attachment site. Contains PS00012 Phosphopantetheine attachment site. Contains PS00606 Beta-ketoacyl synthases active site.%3B~Similar to ML2353%2C ML2354%2C ML0139%2C ML0135%2C ML2354%2C ML2355%2C ML2356%2C ML1229 and ML0101;gbkey=CDS;gene=ML2357;product=polyketide synthase;protein_id=CAC31873.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2816229	2816429	.	-	.	ID=id-ML2357;Note=Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site%2C score 77.50%2C E-value 8.2e-20;gbkey=misc_feature;gene=ML2357
AL450380.1	EMBL	sequence_feature	2816307	2816354	.	-	.	ID=id-ML2357-2;Note=PS00012 Phosphopantetheine attachment site;gbkey=misc_feature;gene=ML2357
AL450380.1	EMBL	sequence_feature	2818878	2819819	.	-	.	ID=id-ML2357-3;Note=Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain%2C score 467.80%2C E-value 8.8e-137;gbkey=misc_feature;gene=ML2357
AL450380.1	EMBL	sequence_feature	2820126	2821400	.	-	.	ID=id-ML2357-4;Note=Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase%2C score 627.40%2C E-value 7.8e-185;gbkey=misc_feature;gene=ML2357
AL450380.1	EMBL	sequence_feature	2820870	2820920	.	-	.	ID=id-ML2357-5;Note=PS00606 Beta-ketoacyl synthases active site;gbkey=misc_feature;gene=ML2357
AL450380.1	EMBL	sequence_feature	2821473	2821673	.	-	.	ID=id-ML2357-6;Note=Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site%2C score 61.40%2C E-value 2.3e-15;gbkey=misc_feature;gene=ML2357
AL450380.1	EMBL	repeat_region	2818807	2820197	.	-	.	ID=id-ML2357-7;Note=1391 bp repeat%2C 100%25 identical to region 2813398..2814788;gbkey=repeat_region;gene=ML2357
AL450380.1	EMBL	repeat_region	2820282	2820396	.	-	.	ID=id-ML2357-8;Note=115 bp repeat%2C 97%25 identical to region 2814882..2814996;gbkey=repeat_region;gene=ML2357
AL450380.1	EMBL	gene	2821706	2823457	.	-	.	ID=gene-fadD26;Name=fadD26;gbkey=Gene;gene=fadD26;gene_biotype=protein_coding;gene_synonym=ML2358
AL450380.1	EMBL	CDS	2821706	2823457	.	-	0	ID=cds-CAC31874.1;Parent=gene-fadD26;Dbxref=GOA:Q7APV7,InterPro:IPR000873,UniProtKB/TrEMBL:Q7APV7,NCBI_GP:CAC31874.1;Name=CAC31874.1;Note=Similar to Mycobacterium tuberculosis acyl-CoA synthase Rv1185c TR:O50441 (EMBL:AL010186) (578 aa) fasta scores: E(): 0%2C 56.9%25 id in 580 aa%2C and to Myxococcus xanthus saframycin synthetase B TR:Q50857 (EMBL:U24657) (1770 aa) fasta scores: E(): 0%2C 36.5%25 id in 578 aa. Contains Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme.%3B~Similar to ML0132%2C ML1234%2C ML0138 and ML0100;gbkey=CDS;gene=fadD26;product=probable acyl-CoA synthase;protein_id=CAC31874.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2821976	2823334	.	-	.	ID=id-fadD26;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score 49.10%2C E-value 3.7e-18;gbkey=misc_feature;gene=fadD26
AL450380.1	EMBL	gene	2824103	2824888	.	-	.	ID=gene-ML2359;Name=ML2359;gbkey=Gene;gene=ML2359;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2824103	2824888	.	-	0	ID=cds-CAC31875.1;Parent=gene-ML2359;Dbxref=GOA:Q9Z5K4,InterPro:IPR001031,InterPro:IPR012223,InterPro:IPR029058,NCBI_GP:CAC31875.1;Name=CAC31875.1;Note=Similar to several thioesterases associated with macrolide anitbiotic production e.g. Streptomyces griseus probable cadicidin biosynthesis thioesterase SW:PABT_STRGR (P33586) (361 aa) fasta scores: E(): 4.9e-24%2C 34.4%25 id in 221 aa. Also similar to Mycobacterium tuberculosis probable thioesterase Rv2928 SW:YT28_MYCTU (Q10974) (261 aa) fasta scores: E(): 0%2C 74.7%25 id in 249 aa. Contains Pfam match to entry PF00975 Thioesterase%2C Thioesterase domain.;gbkey=CDS;gene=ML2359;product=thioesterase;protein_id=CAC31875.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2824127	2824804	.	-	.	ID=id-ML2359;Note=Pfam match to entry PF00975 Thioesterase%2C Thioesterase domain%2C score 196.20%2C E-value 5.1e-55;gbkey=misc_feature;gene=ML2359
AL450380.1	EMBL	pseudogene	2825326	2825950	.	-	.	ID=gene-ML2360;Name=ML2360;gbkey=Gene;gene=ML2360;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2825326	2825950	.	-	0	ID=cds-ML2360;Parent=gene-ML2360;Note=Possible pseudogene of M. tuberculosis orthologue Rv3766 (Best blastx score 165);gbkey=CDS;gene=ML2360;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2826431	2827081	.	+	.	ID=gene-ML2361;Name=ML2361;gbkey=Gene;gene=ML2361;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2826431	2827081	.	+	0	ID=cds-ML2361;Parent=gene-ML2361;Note=Possible pseudogene of M. tuberculosis orthologue Rv3765c (Best blastx score 195);gbkey=CDS;gene=ML2361;product=two-component response regulator (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2827243	2828456	.	+	.	ID=gene-ML2362;Name=ML2362;gbkey=Gene;gene=ML2362;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2827243	2828456	.	+	0	ID=cds-ML2362;Parent=gene-ML2362;Note=Possible pseudogene of M. tuberculosis orthologue Rv3764c (Best blastx score 287);gbkey=CDS;gene=ML2362;product=sensor histidine kinase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2828540	2828813	.	-	.	ID=id-AL450380.1:2828540..2828813;Note=274 bp repeat%2C 99%25 identical to region 421979..422252;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2828942	2829198	.	-	.	ID=gene-ML2363;Name=ML2363;gbkey=Gene;gene=ML2363;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2828942	2829198	.	-	0	ID=cds-ML2363;Parent=gene-ML2363;Note=Possible pseudogene of M. tuberculosis orthologue LpqH;gbkey=CDS;gene=ML2363;product=19 kDa antigenic lipoprotein;pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2829415	2831167	.	+	.	ID=gene-ML2364;Name=ML2364;gbkey=Gene;gene=ML2364;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2829415	2831167	.	+	0	ID=cds-ML2364;Parent=gene-ML2364;Note=Possible pseudogene of M. tuberculosis orthologue Rv3762c (Best blastx score 368);gbkey=CDS;gene=ML2364;product=probable alkyl sulfatase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2833547	2834573	.	+	.	ID=gene-fadE36;Name=fadE36;gbkey=Gene;gene=fadE36;gene_biotype=pseudogene;gene_synonym=ML2365;pseudo=true
AL450380.1	EMBL	CDS	2833547	2834573	.	+	0	ID=cds-fadE36;Parent=gene-fadE36;Note=Possible pseudogene of M. tuberculosis orthologue fadE36 (Best blastx score 427);gbkey=CDS;gene=fadE36;product=acyl-CoA dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2834617	2834958	.	-	.	ID=gene-ML2366;Name=ML2366;gbkey=Gene;gene=ML2366;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2834617	2834958	.	-	0	ID=cds-CAC31882.1;Parent=gene-ML2366;Dbxref=InterPro:IPR010445,UniProtKB/TrEMBL:Q7APV5,NCBI_GP:CAC31882.1;Name=CAC31882.1;Note=Similar to Mycobacterium tuberculosis hypothetical 10.6 kDa protein rv3760 or mtv025.108 TR:O69726 (EMBL:AL022121) (100 aa) fasta scores: E(): 1.9e-19%2C 67.7%25 id in 99 aa. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2366;product=putative membrane protein;protein_id=CAC31882.1;transl_table=11
AL450380.1	EMBL	pseudogene	2835129	2835913	.	+	.	ID=gene-proX;Name=proX;gbkey=Gene;gene=proX;gene_biotype=pseudogene;gene_synonym=ML2367;pseudo=true
AL450380.1	EMBL	CDS	2835129	2835913	.	+	0	ID=cds-proX;Parent=gene-proX;Note=Possible pseudogene of M. tuberculosis orthologue proX (Best blastx score 216);gbkey=CDS;gene=proX;product=similar to osmoprotection proteins (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2835851	2836586	.	+	.	ID=id-AL450380.1:2835851..2836586;Note=Dispersed repeat%2C RLEP%2C copy 35;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2836539	2836761	.	-	.	ID=gene-ML2368;Name=ML2368;gbkey=Gene;gene=ML2368;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2836539	2836761	.	-	0	ID=cds-ML2368;Parent=gene-ML2368;Note=Possible pseudogene of M. tuberculosis orthologue Rv3798 (Best blastx score 52);gbkey=CDS;gene=ML2368;product=transposase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2836807	2837656	.	-	.	ID=gene-PPE-12;Name=PPE;gbkey=Gene;gene=PPE;gene_biotype=pseudogene;gene_synonym=ML2369;pseudo=true
AL450380.1	EMBL	CDS	2836807	2837656	.	-	0	ID=cds-PPE-9;Parent=gene-PPE-12;Note=Possible pseudogene of M. tuberculosis orthologue PPE (Best blastx score 122);gbkey=CDS;gene=PPE;product=PPE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2839684	2840014	.	-	.	ID=gene-sigK;Name=sigK;gbkey=Gene;gene=sigK;gene_biotype=pseudogene;gene_synonym=ML2370;pseudo=true
AL450380.1	EMBL	CDS	2839684	2840014	.	-	0	ID=cds-sigK;Parent=gene-sigK;Note=Possible pseudogene of M. tuberculosis orthologue sigK (Best blastx score 94);gbkey=CDS;gene=sigK;product=ECF-type sigma factor (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2840031	2840634	.	-	.	ID=gene-ML2371;Name=ML2371;gbkey=Gene;gene=ML2371;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2840031	2840634	.	-	0	ID=cds-ML2371;Parent=gene-ML2371;Note=Possible pseudogene of M. tuberculosis orthologue Rv0446c (Best blastx score 144);gbkey=CDS;gene=ML2371;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2840688	2841548	.	-	.	ID=gene-ufaA1;Name=ufaA1;gbkey=Gene;gene=ufaA1;gene_biotype=pseudogene;gene_synonym=ML2372;pseudo=true
AL450380.1	EMBL	CDS	2840688	2841548	.	-	0	ID=cds-ufaA1;Parent=gene-ufaA1;Note=Possible pseudogene of M. tuberculosis orthologue ufaA1 (Best blastx score 142);gbkey=CDS;gene=ufaA1;product=unknown fatty acid methyltransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2841561	2842040	.	-	.	ID=gene-ML2373;Name=ML2373;gbkey=Gene;gene=ML2373;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2841561	2842040	.	-	0	ID=cds-ML2373;Parent=gene-ML2373;Note=Possible pseudogene of M. tuberculosis orthologue Rv0448c (Best blastx score 183);gbkey=CDS;gene=ML2373;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2842064	2842460	.	-	.	ID=gene-ML2374;Name=ML2374;gbkey=Gene;gene=ML2374;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2842064	2842460	.	-	0	ID=cds-ML2374;Parent=gene-ML2374;Note=Possible pseudogene of M. tuberculosis orthologue Rv2874 (Best blastx score 141);gbkey=CDS;gene=ML2374;product=integral membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2842477	2843695	.	-	.	ID=id-AL450380.1:2842477..2843695;Note=shares 100%25 sequence identity with bases 2848573.. 2849765;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2842596	2844878	.	-	.	ID=gene-mmpL2;Name=mmpL2;gbkey=Gene;gene=mmpL2;gene_biotype=pseudogene;gene_synonym=ML2375;pseudo=true
AL450380.1	EMBL	CDS	2842596	2844878	.	-	0	ID=cds-mmpL2;Parent=gene-mmpL2;Note=Possible pseudogene of M. tuberculosis orthologue mmpL2 (Best blastx score 1169);gbkey=CDS;gene=mmpL2;product=conserved large membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2845411	2846082	.	-	.	ID=gene-ML2376;Name=ML2376;gbkey=Gene;gene=ML2376;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2845411	2846082	.	-	0	ID=cds-ML2376;Parent=gene-ML2376;Note=Possible pseudogene of M. tuberculosis orthologue Rv0452 (Best blastx score 398);gbkey=CDS;gene=ML2376;product=putative transcriptional regulator (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2846366	2846830	.	+	.	ID=gene-ML2377;Name=ML2377;gbkey=Gene;gene=ML2377;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2846366	2846830	.	+	0	ID=cds-CAC31893.1;Parent=gene-ML2377;Dbxref=GOA:P54880,InterPro:IPR008693,NCBI_GP:CAC31893.1;Name=CAC31893.1;Note=Similar to Mycobacterium tuberculosis putative membrane protein Rv0451c SW:MMS4_MYCTU (O53736) (140 aa) fasta scores: E(): 0%2C 75.0%25 id in 140 aa%2C and to Mycobacterium avium TmtpA TR:Q9XCF4 (EMBL:AF143772) (221 aa) fasta scores: E(): 0%2C 58.9%25 id in 146 aa. Contains a possible N-terminal signal sequence and other possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2377;product=conserved small membrane protein;protein_id=CAC31893.1;transl_table=11
AL450380.1	EMBL	gene	2846827	2849706	.	+	.	ID=gene-ML2378;Name=ML2378;gbkey=Gene;gene=ML2378;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2846827	2849706	.	+	0	ID=cds-CAC31894.1;Parent=gene-ML2378;Dbxref=GOA:P54881,InterPro:IPR004707,InterPro:IPR004869,NCBI_GP:CAC31894.1;Name=CAC31894.1;Note=Similar to many membrane proteins including: Mycobacterium tuberculosis putative membrane protein Mmpl4 or Rv0450c SW:MML4_MYCTU (O53735) (967 aa) fasta scores: E(): 0%2C 78.4%25 id in 962 aa%2C and to Mycobacterium avium TmtpB TR:Q9XCF5 (EMBL:AF143772) (963 aa) fasta scores: E(): 0%2C 61.8%25 id in 945 aa. Contains multiple possible membrane spanning hydrophobic domains.%3B~Similar to ML0137;gbkey=CDS;gene=ML2378;product=conserved large membrane protein;protein_id=CAC31894.1;transl_table=11
AL450380.1	EMBL	repeat_region	2848565	2849784	.	+	.	ID=id-AL450380.1:2848565..2849784;Note=shares 99%25 sequence identity with bases complement(2842477..2843695);gbkey=repeat_region
AL450380.1	EMBL	gene	2849880	2850209	.	-	.	ID=gene-ML2379;Name=ML2379;gbkey=Gene;gene=ML2379;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2849880	2850209	.	-	0	ID=cds-CAC31895.1;Parent=gene-ML2379;Dbxref=UniProtKB/TrEMBL:Q9CB69,NCBI_GP:CAC31895.1;Name=CAC31895.1;Note=Unknown function.;gbkey=CDS;gene=ML2379;product=hypothetical protein;protein_id=CAC31895.1;transl_table=11
AL450380.1	EMBL	gene	2850483	2850944	.	-	.	ID=gene-ML2380;Name=ML2380;gbkey=Gene;gene=ML2380;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2850483	2850944	.	-	0	ID=cds-CAC31896.1;Parent=gene-ML2380;Dbxref=InterPro:IPR021357,UniProtKB/TrEMBL:Q9CB68,NCBI_GP:CAC31896.1;Name=CAC31896.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv0455c TR:O53740 (EMBL:AL021932) (148 aa) fasta scores: E(): 0%2C 66.4%25 id in 152 aa. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=ML2380;product=possible secreted protein;protein_id=CAC31896.1;transl_table=11
AL450380.1	EMBL	pseudogene	2851040	2851920	.	-	.	ID=gene-echA2;Name=echA2;gbkey=Gene;gene=echA2;gene_biotype=pseudogene;gene_synonym=ML2381;pseudo=true
AL450380.1	EMBL	CDS	2851040	2851920	.	-	0	ID=cds-echA2;Parent=gene-echA2;Note=Possible pseudogene of M. tuberculosis orthologue echA2 (Best blastx score 203);gbkey=CDS;gene=echA2;product=enoyl-CoA hydratase/isomerase superfamily (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2852001	2854010	.	-	.	ID=gene-ML2382;Name=ML2382;gbkey=Gene;gene=ML2382;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2852001	2854010	.	-	0	ID=cds-ML2382;Parent=gene-ML2382;Note=Possible pseudogene of M. tuberculosis orthologue Rv0457c (Best blastx score 580);gbkey=CDS;gene=ML2382;product=probable peptidase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2854114	2855433	.	+	.	ID=gene-ML2383;Name=ML2383;gbkey=Gene;gene=ML2383;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2854114	2855433	.	+	0	ID=cds-ML2383;Parent=gene-ML2383;Note=Possible pseudogene of M. tuberculosis orthologue Rv0458 (Best blastx score 356);gbkey=CDS;gene=ML2383;product=aldehyde dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2855468	2855841	.	+	.	ID=gene-ML2384;Name=ML2384;gbkey=Gene;gene=ML2384;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2855468	2855841	.	+	0	ID=cds-ML2384;Parent=gene-ML2384;Note=Possible pseudogene of M. tuberculosis orthologue Rv0459 (Best blastx score 192);gbkey=CDS;gene=ML2384;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2855970	2856211	.	+	.	ID=gene-ML2385;Name=ML2385;gbkey=Gene;gene=ML2385;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2855970	2856211	.	+	0	ID=cds-ML2385;Parent=gene-ML2385;Note=Possible pseudogene of M. tuberculosis orthologue Rv0460 (Best blastx score 182);gbkey=CDS;gene=ML2385;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2856445	2856776	.	+	.	ID=gene-ML2386;Name=ML2386;gbkey=Gene;gene=ML2386;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2856445	2856776	.	+	0	ID=cds-ML2386;Parent=gene-ML2386;Note=Possible pseudogene of M. tuberculosis orthologue Rv0461 (Best blastx score 118);gbkey=CDS;gene=ML2386;product=unknown possible membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2856881	2858284	.	+	.	ID=gene-lpd;Name=lpd;gbkey=Gene;gene=lpd;gene_biotype=protein_coding;gene_synonym=ML2387
AL450380.1	EMBL	CDS	2856881	2858284	.	+	0	ID=cds-CAC31903.1;Parent=gene-lpd;Dbxref=GOA:Q50068,InterPro:IPR001327,InterPro:IPR004099,InterPro:IPR006258,InterPro:IPR012999,InterPro:IPR013027,InterPro:IPR016156,InterPro:IPR023753,NCBI_GP:CAC31903.1;Name=CAC31903.1;Note=Highly similar to many dihydrolipoamide dehydrogenases including: Mycobacterium tuberculosis Rv0462 TR:O53747 (EMBL:AL021933) (464 aa) fasta scores: E(): 0%2C 83.1%25 id in 467 aa and Bacillus subtilis SW:DLD2_BACSU (P54533) (474 aa) fasta scores: E(): 0%2C 43.2%25 id in 477 aa. Contains Pfam match to entry PF00070 pyr_redox%2C Pyridine nucleotide-disulphide oxidoreductase. Contains PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site.;gbkey=CDS;gene=lpd;product=dihydrolipoamide dehydrogenase;protein_id=CAC31903.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2856896	2857819	.	+	.	ID=id-lpd;Note=Pfam match to entry PF00070 pyr_redox%2C Pyridine nucleotide-disulphide oxidoreductase%2C score 307.50%2C E-value 4.5e-90;gbkey=misc_feature;gene=lpd
AL450380.1	EMBL	sequence_feature	2856992	2857024	.	+	.	ID=id-lpd-2;Note=PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site;gbkey=misc_feature;gene=lpd
AL450380.1	EMBL	gene	2858302	2858607	.	+	.	ID=gene-ML2388;Name=ML2388;gbkey=Gene;gene=ML2388;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2858302	2858607	.	+	0	ID=cds-CAC31904.1;Parent=gene-ML2388;Dbxref=UniProtKB/TrEMBL:Q7APV4,NCBI_GP:CAC31904.1;Name=CAC31904.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv0463 TR:O53748 (EMBL:AL021933) (97 aa) fasta scores: E(): 1.1e-18%2C 57.9%25 id in 95 aa. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2388;product=possible membrane protein;protein_id=CAC31904.1;transl_table=11
AL450380.1	EMBL	repeat_region	2858662	2859664	.	+	.	ID=id-AL450380.1:2858662..2859664;Note=REPLEP region 14%2C 3'-end most similar to REPLEP 3;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	2858672	2859551	.	+	.	ID=id-AL450380.1:2858672..2859551;Note=Dispersed repeat%2C REPLEP%2C copy 14;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	2859552	2859579	.	+	.	ID=id-AL450380.1:2859552..2859579;Note=28 bp subsequence of 45 bp REPLEP-associated sequence;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2859659	2861313	.	-	.	ID=gene-ML2389;Name=ML2389;gbkey=Gene;gene=ML2389;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2859659	2861313	.	-	0	ID=cds-ML2389;Parent=gene-ML2389;Note=Possible pseudogene of M. tuberculosis orthologue Rv1084 (Best blastx score 325);gbkey=CDS;gene=ML2389;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2861300	2861605	.	-	.	ID=gene-ML2390;Name=ML2390;gbkey=Gene;gene=ML2390;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2861300	2861605	.	-	0	ID=cds-CAC31906.1;Parent=gene-ML2390;Dbxref=UniProtKB/TrEMBL:Q9CB67,NCBI_GP:CAC31906.1;Name=CAC31906.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv1083 TR:O53431 (EMBL:AL021897) (88 aa) fasta scores: E(): 4.9e-15%2C 57.4%25 id in 101 aa. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=ML2390;product=possible secreted protein;protein_id=CAC31906.1;transl_table=11
AL450380.1	EMBL	gene	2861602	2862474	.	-	.	ID=gene-ML2391;Name=ML2391;gbkey=Gene;gene=ML2391;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2861602	2862474	.	-	0	ID=cds-CAC31907.1;Parent=gene-ML2391;Dbxref=GOA:Q7APV3,InterPro:IPR003737,InterPro:IPR017811,InterPro:IPR024078,UniProtKB/TrEMBL:Q7APV3,NCBI_GP:CAC31907.1;Name=CAC31907.1;Note=Similar to several including: Mycobacterium tuberculosis hypothetical protein Rv1082 TR:O53430 (EMBL:AL021897) (288 aa) fasta scores: E(): 0%2C 86.4%25 id in 287 aa%2C and to Streptomyces lincolnensis lmbE TR:Q54358 (EMBL:X79146) (270 aa) fasta scores: E(): 8.9e-13%2C 33.0%25 id in 282 aa.%3B~Similar to ML1495;gbkey=CDS;gene=ML2391;product=conserved hypothetical protein;protein_id=CAC31907.1;transl_table=11
AL450380.1	EMBL	gene	2862579	2863013	.	+	.	ID=gene-ML2392;Name=ML2392;gbkey=Gene;gene=ML2392;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2862579	2863013	.	+	0	ID=cds-CAC31908.1;Parent=gene-ML2392;Dbxref=InterPro:IPR025443,UniProtKB/TrEMBL:Q9CB66,NCBI_GP:CAC31908.1;Name=CAC31908.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv1081c TR:O53429 (EMBL:AL021897) (144 aa) fasta scores: E(): 0%2C 69.0%25 id in 142 aa. Contains a possible membrane spanning hydrophobic domain.;gbkey=CDS;gene=ML2392;product=conserved membrane protein;protein_id=CAC31908.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	2863223	2863227	.	+	.	ID=id-AL450380.1:2863223..2863227;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	2863237	2863731	.	+	.	ID=gene-greA;Name=greA;gbkey=Gene;gene=greA;gene_biotype=protein_coding;gene_synonym=ML2393
AL450380.1	EMBL	CDS	2863237	2863731	.	+	0	ID=cds-CAC31909.1;Parent=gene-greA;Dbxref=GOA:P46808,InterPro:IPR001437,InterPro:IPR006359,InterPro:IPR018151,InterPro:IPR022691,InterPro:IPR023459,InterPro:IPR028624,NCBI_GP:CAC31909.1;Name=CAC31909.1;Note=Similar to Mycobacterium tuberculosis transcription elongation factor Rv1080c SW:GREA_MYCTU (O53428) (164 aa) fasta scores: E(): 0%2C 94.5%25 id in 164 aa%2C and to Escherichia coli transcription elongation factor GreA SW:GREA_ECOLI (P21346%3B P78111) (158 aa) fasta scores: E(): 1e-08%2C 34.6%25 id in 159 aa. Contains Pfam match to entry PF01272 GreA_GreB%2C Prokaryotic transcription elongation factor%2C GreA/GreB. Contains PS00829 Prokaryotic transcription elongation factors signature 1. Contains PS00830 Prokaryotic transcription elongation factors signature 2.;gbkey=CDS;gene=greA;product=transcription elongation factor G;protein_id=CAC31909.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2863246	2863722	.	+	.	ID=id-greA;Note=Pfam match to entry PF01272 GreA_GreB%2C Prokaryotic transcription elongation factor%2C GreA/GreB%2C score 314.60%2C E-value 1.1e-90;gbkey=misc_feature;gene=greA
AL450380.1	EMBL	sequence_feature	2863264	2863386	.	+	.	ID=id-greA-2;Note=PS00829 Prokaryotic transcription elongation factors signature 1;gbkey=misc_feature;gene=greA
AL450380.1	EMBL	sequence_feature	2863606	2863656	.	+	.	ID=id-greA-3;Note=PS00830 Prokaryotic transcription elongation factors signature 2;gbkey=misc_feature;gene=greA
AL450380.1	EMBL	gene	2863794	2864960	.	-	.	ID=gene-metB;Name=metB;gbkey=Gene;gene=metB;gene_biotype=protein_coding;gene_synonym=ML2394
AL450380.1	EMBL	CDS	2863794	2864960	.	-	0	ID=cds-CAC31910.1;Parent=gene-metB;Dbxref=GOA:P46807,InterPro:IPR000277,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,NCBI_GP:CAC31910.1;Name=CAC31910.1;Note=Similar to Mycobacterium tuberculosis cystathionine gamma-synthase Rv1079 SW:METB_MYCTU (O53427) (388 aa) fasta scores: E(): 0%2C 87.3%25 id in 387 aa%2C and to Corynebacterium glutamicum cystathionine gamma-synthase MetB TR:Q9RQ97 (EMBL:AF126953) (386 aa) fasta scores: E(): 0%2C 61.2%25 id in 376 aa. Contains Pfam match to entry PF01053 Cys_Met_Meta_PP%2C Cys/Met metabolism PLP-dependent enzyme. Contains PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site.;gbkey=CDS;gene=metB;product=cystathionine [gamma]-synthase;protein_id=CAC31910.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2863797	2864918	.	-	.	ID=id-metB;Note=Pfam match to entry PF01053 Cys_Met_Meta_PP%2C Cys/Met metabolism PLP-dependent enzyme%2C score 781.60%2C E-value 3e-231;gbkey=misc_feature;gene=metB
AL450380.1	EMBL	sequence_feature	2864319	2864363	.	-	.	ID=id-metB-2;Note=PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site;gbkey=misc_feature;gene=metB
AL450380.1	EMBL	gene	2865040	2865789	.	-	.	ID=gene-Ag36;Name=Ag36;gbkey=Gene;gene=Ag36;gene_biotype=protein_coding;gene_synonym=ML2395
AL450380.1	EMBL	CDS	2865040	2865789	.	-	0	ID=cds-CAC31911.1;Parent=gene-Ag36;Dbxref=InterPro:IPR010432,NCBI_GP:CAC31911.1;Name=CAC31911.1;Note=Previously characterised Mycobacterium leprae proline-rich antigen Ag36 SW:PRA_MYCLE (P41484) (249 aa) fasta scores: E(): 0%2C 99.2%25 id in 249 aa. Note the N-terminus of this protein is extremely rich in the amino acid Pro and contains a 3xGGSYPPPPP repeats. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=Ag36;product=proline rich antigenic protein;protein_id=CAC31911.1;transl_table=11
AL450380.1	EMBL	repeat_region	2865566	2865648	.	+	.	ID=id-AL450380.1:2865566..2865648;Note=2.8 copies of 30 bp tandem repeat Consensus%2C GGCGGAGGTGGCGGGTAAGAACCGCCGGGC;gbkey=repeat_region
AL450380.1	EMBL	gene	2865939	2867333	.	-	.	ID=gene-cysM2;Name=cysM2;gbkey=Gene;gene=cysM2;gene_biotype=protein_coding;gene_synonym=ML2396
AL450380.1	EMBL	CDS	2865939	2867333	.	-	0	ID=cds-CAC31912.1;Parent=gene-cysM2;Dbxref=GOA:Q9CB65,InterPro:IPR000644,InterPro:IPR001926,InterPro:IPR005857,UniProtKB/TrEMBL:Q9CB65,NCBI_GP:CAC31912.1;Name=CAC31912.1;Note=Similar to Prokaryotic and Eukaryotic cystathionine beta-synthases including: Mycobacterium tuberculosis Rv1077 TR:O53425 (EMBL:AL021897) (464 aa) fasta scores: E(): 0%2C 90.1%25 id in 464 aa and Homo sapiens SW:CBS_HUMAN (550 aa) fasta scores: E(): 0%2C 39.5%25 id in 479 aa. Contains 2 Pfam matches to entry PF00571 CBS%2C CBS domain. Contains Pfam match to entry PF00291 S_T_dehydratase%2C Pyridoxal-phosphate dependent enzyme.%3B~Similar to ML0839;gbkey=CDS;gene=cysM2;product=cystathionine [beta]-synthase;protein_id=CAC31912.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2865960	2866112	.	-	.	ID=id-cysM2;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 16.40%2C E-value 0.46;gbkey=misc_feature;gene=cysM2
AL450380.1	EMBL	sequence_feature	2866146	2866322	.	-	.	ID=id-cysM2-2;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 40.00%2C E-value 5.2e-08;gbkey=misc_feature;gene=cysM2
AL450380.1	EMBL	sequence_feature	2866443	2867315	.	-	.	ID=id-cysM2-3;Note=Pfam match to entry PF00291 S_T_dehydratase%2C Pyridoxal-phosphate dependent enzyme%2C score 368.00%2C E-value 1e-106;gbkey=misc_feature;gene=cysM2
AL450380.1	EMBL	pseudogene	2867406	2868270	.	-	.	ID=gene-lipU;Name=lipU;gbkey=Gene;gene=lipU;gene_biotype=pseudogene;gene_synonym=ML2397;pseudo=true
AL450380.1	EMBL	CDS	2867406	2868270	.	-	0	ID=cds-lipU;Parent=gene-lipU;Note=Possible pseudogene of M. tuberculosis orthologue lipU (Best blastx score 548);gbkey=CDS;gene=lipU;product=probable esterase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2868737	2869468	.	+	.	ID=gene-ML2398;Name=ML2398;gbkey=Gene;gene=ML2398;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2868737	2869468	.	+	0	ID=cds-ML2398;Parent=gene-ML2398;Note=Possible pseudogene of M. tuberculosis orthologue Rv1075c (Best blastx score 209);gbkey=CDS;gene=ML2398;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2870010	2870271	.	+	.	ID=id-AL450380.1:2870010..2870271;Note=262 bp repeat%2C 99%25 identical to region 3194229..3194490;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2870214	2870550	.	+	.	ID=gene-fadA3;Name=fadA3;gbkey=Gene;gene=fadA3;gene_biotype=pseudogene;gene_synonym=ML2399;pseudo=true
AL450380.1	EMBL	CDS	2870214	2870550	.	+	0	ID=cds-fadA3;Parent=gene-fadA3;Note=Possible pseudogene of M. tuberculosis orthologue fadA3 (Best blastx score 125);gbkey=CDS;gene=fadA3;product=acetyl-CoA C-acetyltransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2870652	2871509	.	-	.	ID=gene-ML2400;Name=ML2400;gbkey=Gene;gene=ML2400;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2870652	2871509	.	-	0	ID=cds-CAC31916.1;Parent=gene-ML2400;Dbxref=GOA:Q9CB64,InterPro:IPR010539,UniProtKB/TrEMBL:Q9CB64,NCBI_GP:CAC31916.1;Name=CAC31916.1;Note=Similar to Mycobacterium tuberculosis putative transmembrane protein rv1072 or mtv017.25 TR:O53420 (EMBL:AL021897) (278 aa) fasta scores: E(): 0%2C 77.5%25 id in 285 aa%2C and to Streptomyces griseus transfer RNA-leu TR:Q54192 (EMBL:M80628) (293 aa) fasta scores: E(): 4.3e-27%2C 40.0%25 id in 300 aa. Contains multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2400;product=probable transmembrane protein;protein_id=CAC31916.1;transl_table=11
AL450380.1	EMBL	gene	2871769	2872806	.	+	.	ID=gene-ML2401;Name=ML2401;gbkey=Gene;gene=ML2401;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2871769	2872806	.	+	0	ID=cds-CAC31917.1;Parent=gene-ML2401;Dbxref=GOA:Q7APV2,InterPro:IPR001753,InterPro:IPR014748,InterPro:IPR029045,UniProtKB/TrEMBL:Q7APV2,NCBI_GP:CAC31917.1;Name=CAC31917.1;Note=Similar to several putative Prokaryotic and Eukaryotic enoyl-CoA hydratases including: Mycobacterium tuberculosis Rv1071c TR:O53419 (EMBL:AL021897) (345 aa) fasta scores: E(): 0%2C 77.7%25 id in 345 aa and Arabidopsis thaliana putative 3-hydroxyisobutyryl-coenzyme A hydrolase TR:O49330 (EMBL:AC002340) (410 aa) fasta scores: E(): 0%2C 35.1%25 id in 345 aa. Contains Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family.;gbkey=CDS;gene=ML2401;product=putative enoyl-CoA hydratase/isomerase;protein_id=CAC31917.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2871817	2872332	.	+	.	ID=id-ML2401;Note=Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family%2C score 95.00%2C E-value 1.5e-24;gbkey=misc_feature;gene=ML2401
AL450380.1	EMBL	gene	2872831	2873604	.	+	.	ID=gene-ML2402;Name=ML2402;gbkey=Gene;gene=ML2402;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2872831	2873604	.	+	0	ID=cds-CAC31918.1;Parent=gene-ML2402;Dbxref=GOA:O07137,InterPro:IPR001753,InterPro:IPR018376,InterPro:IPR029045,NCBI_GP:CAC31918.1;Name=CAC31918.1;Note=Similar to Mycobacterium tuberculosis probable enoyl-CoA hydratase Rv1070c SW:ECH8_MYCTU (O53418) (257 aa) fasta scores: E(): 0%2C 86.4%25 id in 257 aa%2C and to Rhizobium meliloti probable enoyl-CoA hydratase SW:ECHH_RHIME (Q52995) (257 aa) fasta scores: E(): 0%2C 67.3%25 id in 257 aa. Contains Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family. Contains PS00166 Enoyl-CoA hydratase/isomerase signature.%3B~Similar to ML1724;gbkey=CDS;gene=ML2402;product=putative enoyl-CoA hydratase/isomerase;protein_id=CAC31918.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2872873	2873373	.	+	.	ID=id-ML2402;Note=Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family%2C score 245.50%2C E-value 7.6e-70;gbkey=misc_feature;gene=ML2402
AL450380.1	EMBL	sequence_feature	2873122	2873184	.	+	.	ID=id-ML2402-2;Note=PS00166 Enoyl-CoA hydratase/isomerase signature;gbkey=misc_feature;gene=ML2402
AL450380.1	EMBL	pseudogene	2873818	2875110	.	+	.	ID=gene-ML2403;Name=ML2403;gbkey=Gene;gene=ML2403;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2873818	2875110	.	+	0	ID=cds-ML2403;Parent=gene-ML2403;Note=Possible pseudogene of M. tuberculosis orthologue Rv1069c (Best blastx score 333);gbkey=CDS;gene=ML2403;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2875314	2876227	.	-	.	ID=id-AL450380.1:2875314..2876227;Note=REPLEP region 15%2C 5'-end most similar to REPLEP 3;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	2875314	2876174	.	-	.	ID=id-AL450380.1:2875314..2876174;Note=Dispersed repeat%2C REPLEP%2C copy 15%3B truncated at 3'-end;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2876290	2876742	.	-	.	ID=gene-galE2;Name=galE2;gbkey=Gene;gene=galE2;gene_biotype=pseudogene;gene_synonym=ML2404;pseudo=true
AL450380.1	EMBL	CDS	2876290	2876742	.	-	0	ID=cds-galE2;Parent=gene-galE2;Note=Possible pseudogene of M. tuberculosis orthologue galE2 (Best blastx score 316);gbkey=CDS;gene=galE2;product=UDP-glucose 4-epimerase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2876792	2877299	.	-	.	ID=gene-pnp;Name=pnp;gbkey=Gene;gene=pnp;gene_biotype=pseudogene;gene_synonym=ML2405;pseudo=true
AL450380.1	EMBL	CDS	2876792	2877299	.	-	0	ID=cds-pnp;Parent=gene-pnp;Note=Possible pseudogene of M. tuberculosis orthologue pnp (Best blastx score 196);gbkey=CDS;gene=pnp;product=phosphorylase from Pnp/MtaP family 2 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2877398	2878282	.	+	.	ID=gene-ML2406;Name=ML2406;gbkey=Gene;gene=ML2406;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2877398	2878282	.	+	0	ID=cds-CAC31922.1;Parent=gene-ML2406;Dbxref=GOA:O07134,InterPro:IPR000537,InterPro:IPR004657,InterPro:IPR026046,NCBI_GP:CAC31922.1;Name=CAC31922.1;Note=Similar to Mycobacterium tuberculosis probable 1%2C4-dihydroxy-2-naphthoate octaprenyltransferase Rv0534c SW:MENA_MYCTU (O06400) (292 aa) fasta scores: E(): 0%2C 80.6%25 id in 288 aa%2C and to Escherichia coli 1%2C4-dihydroxy-2-naphthoate octaprenyltransferase menA SW:MENA_ECOLI (P32166) (308 aa) fasta scores: E(): 1.6e-24%2C 34.4%25 id in 276 aa. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2406;product=probable 4-dihydroxy-2-naphthoate octaprenyltransferase;protein_id=CAC31922.1;transl_table=11
AL450380.1	EMBL	gene	2878350	2878685	.	-	.	ID=gene-ML2407;Name=ML2407;gbkey=Gene;gene=ML2407;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2878350	2878685	.	-	0	ID=cds-CAC31923.1;Parent=gene-ML2407;Dbxref=InterPro:IPR025323,UniProtKB/TrEMBL:Q9CB63,NCBI_GP:CAC31923.1;Name=CAC31923.1;Note=Similar to Mycobacterium tuberculosis hypothetical 11.4 kDa protein rv0531 or mtcy25d10.10 TR:O06397 (EMBL:Z95558) (105 aa) fasta scores: E(): 2.4e-24%2C 73.1%25 id in 93 aa.Contains a possible membrane spanning hydrophobic domain.;gbkey=CDS;gene=ML2407;product=putative membrane protein;protein_id=CAC31923.1;transl_table=11
AL450380.1	EMBL	pseudogene	2878873	2879993	.	-	.	ID=gene-ML2408;Name=ML2408;gbkey=Gene;gene=ML2408;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2878873	2879993	.	-	0	ID=cds-ML2408;Parent=gene-ML2408;Note=Possible pseudogene of M. tuberculosis orthologue Rv0530 (Best blastx score 266);gbkey=CDS;gene=ML2408;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2880041	2881024	.	-	.	ID=gene-ML2409;Name=ML2409;gbkey=Gene;gene=ML2409;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2880041	2881024	.	-	0	ID=cds-CAC31925.1;Parent=gene-ML2409;Dbxref=GOA:Q7APV1,InterPro:IPR002541,InterPro:IPR017562,UniProtKB/TrEMBL:Q7APV1,NCBI_GP:CAC31925.1;Name=CAC31925.1;Note=Similar to many cytochrome C biogenesis proteins including Mycobacterium tuberculosis Rv0529 TR:O06395 (EMBL:Z95558) (324 aa) fasta scores: E(): 0%2C 83.2%25 id in 327 aa%2C and to Guillardia theta CcsA SW:CCSA_GUITH (P22554) (301 aa) fasta scores: E(): 5.5e-16%2C 35.6%25 id in 261 aa. Contains a possible N-terminal signal sequence and multiple possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF01578 CytC_asm%2C Cytochrome C assembly protein.;gbkey=CDS;gene=ML2409;product=possible cytochrome C biogenesis protein;protein_id=CAC31925.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2880122	2880763	.	-	.	ID=id-ML2409;Note=Pfam match to entry PF01578 CytC_asm%2C Cytochrome C assembly protein%2C score 158.20%2C E-value 1.4e-43;gbkey=misc_feature;gene=ML2409
AL450380.1	EMBL	gene	2881021	2882649	.	-	.	ID=gene-ML2410;Name=ML2410;gbkey=Gene;gene=ML2410;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2881021	2882649	.	-	0	ID=cds-CAC31926.1;Parent=gene-ML2410;Dbxref=InterPro:IPR007816,UniProtKB/TrEMBL:Q9CB62,NCBI_GP:CAC31926.1;Name=CAC31926.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv0528 TR:O06394 (EMBL:Z95558) (529 aa) fasta scores: E(): 0%2C 80.9%25 id in 530 aa. Contains multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2410;product=conserved membrane protein.;protein_id=CAC31926.1;transl_table=11
AL450380.1	EMBL	gene	2882646	2883434	.	-	.	ID=gene-ML2411;Name=ML2411;gbkey=Gene;gene=ML2411;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2882646	2883434	.	-	0	ID=cds-CAC31927.1;Parent=gene-ML2411;Dbxref=GOA:Q7APV0,InterPro:IPR003834,UniProtKB/TrEMBL:Q7APV0,NCBI_GP:CAC31927.1;Name=CAC31927.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv0527 TR:O06393 (EMBL:Z95558) (259 aa) fasta scores: E(): 0%2C 79.0%25 id in 262 aa%2C and to Bacillus subtilis cytochrome C-type biogenesis protein SW:CCDA_BACSU (P45706) (235 aa) fasta scores: E(): 9e-08%2C 28.9%25 id in 242 aa. Contains multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2411;product=possible cytochrome C-type biogenesis protein;protein_id=CAC31927.1;transl_table=11
AL450380.1	EMBL	gene	2883431	2884099	.	-	.	ID=gene-ML2412;Name=ML2412;gbkey=Gene;gene=ML2412;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2883431	2884099	.	-	0	ID=cds-CAC31928.1;Parent=gene-ML2412;Dbxref=GOA:Q9CB61,InterPro:IPR000866,InterPro:IPR012336,InterPro:IPR017937,UniProtKB/TrEMBL:Q9CB61,NCBI_GP:CAC31928.1;Name=CAC31928.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv0526 TR:O06392 (EMBL:Z95558) (216 aa) fasta scores: E(): 0%2C 78.5%25 id in 214 aa.;gbkey=CDS;gene=ML2412;product=conserved hypothetical protein;protein_id=CAC31928.1;transl_table=11
AL450380.1	EMBL	gene	2884096	2884704	.	-	.	ID=gene-ML2413;Name=ML2413;gbkey=Gene;gene=ML2413;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2884096	2884704	.	-	0	ID=cds-CAC31929.1;Parent=gene-ML2413;Dbxref=InterPro:IPR013078,InterPro:IPR029033,UniProtKB/TrEMBL:Q7APU9,NCBI_GP:CAC31929.1;Name=CAC31929.1;Note=Similar to Mycobacterium tuberculosis protein Rv0525 TR:O06391 (EMBL:Z95558) (202 aa) fasta scores: E(): 0%2C 82.5%25 id in 200 aa%2C and to Escherichia coli probable phosphoglycerate mutase SW:PMG2_ECOLI (P36942) (215 aa) fasta scores: E(): 0.002%2C 26.1%25 id in 184 aa. Contains Pfam match to entry PF00300 PGAM%2C Phosphoglycerate mutase family.;gbkey=CDS;gene=ML2413;product=possible phosphoglycerate mutase;protein_id=CAC31929.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2884450	2884545	.	-	.	ID=id-ML2413;Note=Pfam match to entry PF00300 PGAM%2C Phosphoglycerate mutase family%2C score 16.30%2C E-value 0.0023;gbkey=misc_feature;gene=ML2413
AL450380.1	EMBL	gene	2884704	2886044	.	-	.	ID=gene-hemL;Name=hemL;gbkey=Gene;gene=hemL;gene_biotype=protein_coding;gene_synonym=ML2414
AL450380.1	EMBL	CDS	2884704	2886044	.	-	0	ID=cds-CAC31930.1;Parent=gene-hemL;Dbxref=GOA:P46716,InterPro:IPR004639,InterPro:IPR005814,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,NCBI_GP:CAC31930.1;Name=CAC31930.1;Note=Similar to Mycobacterium tuberculosis glutamate-1-semialdehyde 2%2C1-aminomutase HemL Rv0524 SW:GSA_MYCTU (O06390) (462 aa) fasta scores: E(): 0%2C 82.4%25 id in 460 aa%2C and to Escherichia coli glutamate-1-semialdehyde 2%2C1-aminomutase HemL SW:GSA_ECOLI (P23893%3B P78277) (426 aa) fasta scores: E(): 0%2C 53.0%25 id in 419 aa. Contains Pfam match to entry PF00202 aminotran_3%2C Aminotransferases class-III pyridoxal-phosphate. Contains PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.%3B~Similar to ML1409;gbkey=CDS;gene=hemL;product=glutamate-1-semialdehyde aminotransferase;protein_id=CAC31930.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2884794	2885882	.	-	.	ID=id-hemL;Note=Pfam match to entry PF00202 aminotran_3%2C Aminotransferases class-III pyridoxal-phosphate%2C score 474.80%2C E-value 1.3e-164;gbkey=misc_feature;gene=hemL
AL450380.1	EMBL	sequence_feature	2885193	2885303	.	-	.	ID=id-hemL-2;Note=PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site;gbkey=misc_feature;gene=hemL
AL450380.1	EMBL	pseudogene	2886187	2886531	.	+	.	ID=gene-ML2415;Name=ML2415;gbkey=Gene;gene=ML2415;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2886187	2886531	.	+	0	ID=cds-ML2415;Parent=gene-ML2415;Note=Possible pseudogene of M. tuberculosis orthologue Rv0523c (Best blastx score 205);gbkey=CDS;gene=ML2415;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2887367	2887676	.	-	.	ID=id-AL450380.1:2887367..2887676;Note=310 bp repeat%2C 100%25 identical to region 2264780..2265089;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2888128	2889425	.	-	.	ID=gene-gabP;Name=gabP;gbkey=Gene;gene=gabP;gene_biotype=pseudogene;gene_synonym=ML2416;pseudo=true
AL450380.1	EMBL	CDS	2888128	2889425	.	-	0	ID=cds-gabP;Parent=gene-gabP;Note=Possible pseudogene of M. tuberculosis orthologue gabP (Best blastx score 474);gbkey=CDS;gene=gabP;product=probable 4-amino butyrate transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2891474	2892347	.	+	.	ID=gene-ML2417;Name=ML2417;gbkey=Gene;gene=ML2417;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2891474	2892347	.	+	0	ID=cds-ML2417;Parent=gene-ML2417;Note=Possible pseudogene of M. tuberculosis orthologue Rv0519c (Best blastx score 337);gbkey=CDS;gene=ML2417;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2893248	2893761	.	-	.	ID=gene-ML2418;Name=ML2418;gbkey=Gene;gene=ML2418;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2893248	2893761	.	-	0	ID=cds-ML2418;Parent=gene-ML2418;Note=Possible pseudogene of M. tuberculosis orthologue Rv0513 (Best blastx score 170);gbkey=CDS;gene=ML2418;product=probable membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2893799	2894788	.	-	.	ID=gene-hemB;Name=hemB;gbkey=Gene;gene=hemB;gene_biotype=protein_coding;gene_synonym=ML2419
AL450380.1	EMBL	CDS	2893799	2894788	.	-	0	ID=cds-CAC31935.1;Parent=gene-hemB;Dbxref=GOA:P46723,InterPro:IPR001731,InterPro:IPR013785,NCBI_GP:CAC31935.1;Name=CAC31935.1;Note=Similar to many including: Mycobacterium tuberculosis delta-aminolevulinic acid dehydratase Rv0512 SW:HEM2_MYCTU (O33357) (329 aa) fasta scores: E(): 0%2C 87.5%25 id in 329 aa%2C and to Escherichia coli delta-aminolevulinic acid dehydratase HemB SW:HEM2_ECOLI (P15002%3B P78247) (323 aa) fasta scores: E(): 0%2C 46.7%25 id in 317 aa. Contains Pfam match to entry PF00490 ALAD%2C Delta-aminolevulinic acid dehydratase. Contains PS00169 Delta-aminolevulinic acid dehydratase active site.;gbkey=CDS;gene=hemB;product=[delta]-aminolevulinic acid dehydratase;protein_id=CAC31935.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2893826	2894731	.	-	.	ID=id-hemB;Note=Pfam match to entry PF00490 ALAD%2C Delta-aminolevulinic acid dehydratase%2C score 711.20%2C E-value 4.6e-210;gbkey=misc_feature;gene=hemB
AL450380.1	EMBL	sequence_feature	2894012	2894050	.	-	.	ID=id-hemB-2;Note=PS00169 Delta-aminolevulinic acid dehydratase active site;gbkey=misc_feature;gene=hemB
AL450380.1	EMBL	gene	2894835	2896526	.	-	.	ID=gene-hemD;Name=hemD;gbkey=Gene;gene=hemD;gene_biotype=protein_coding;gene_synonym=ML2420
AL450380.1	EMBL	CDS	2894835	2896526	.	-	0	ID=cds-CAC31936.1;Parent=gene-hemD;Dbxref=GOA:Q9CB60,InterPro:IPR000878,InterPro:IPR003754,InterPro:IPR014776,InterPro:IPR014777,UniProtKB/TrEMBL:Q9CB60,NCBI_GP:CAC31936.1;Name=CAC31936.1;Note=Similar to Mycobacterium tuberculosis Rv0511 TR:P95077 (EMBL:Z83865) (565 aa) fasta scores: E(): 0%2C 85.7%25 id in 565 aa and to Clostridium josui porphyrin biosynthesis protein HemD [includes: uroporphyrin-III C-methyltransferase hemD SW:HEM4_CLOJO (Q59294) (504 aa) fasta scores: E(): 3e-24%2C 24.4%25 id in 545 aa. Contains Pfam match to entry PF00590 TP_methylase%2C Tetrapyrrole (Corrin/Porphyrin) Methylases..;gbkey=CDS;gene=hemD;product=possible uroporphyrin-III C-methyltransferase;protein_id=CAC31936.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2895774	2896478	.	-	.	ID=id-hemD;Note=Pfam match to entry PF00590 TP_methylase%2C Tetrapyrrole (Corrin/Porphyrin) Methylases.%2C score 72.60%2C E-value 8.3e-18;gbkey=misc_feature;gene=hemD
AL450380.1	EMBL	gene	2896533	2897489	.	-	.	ID=gene-hemC;Name=hemC;gbkey=Gene;gene=hemC;gene_biotype=protein_coding;gene_synonym=ML2421
AL450380.1	EMBL	CDS	2896533	2897489	.	-	0	ID=cds-CAC31937.1;Parent=gene-hemC;Dbxref=GOA:Q49808,InterPro:IPR000860,InterPro:IPR022417,InterPro:IPR022418,InterPro:IPR022419,NCBI_GP:CAC31937.1;Name=CAC31937.1;Note=Similar to Mycobacterium tuberculosis porphobilinogen deaminase Rv0510 SW:HEM3_MYCTU (Q11173) (309 aa) fasta scores: E(): 0%2C 87.0%25 id in 308 aa%2C and to Escherichia coli porphobilinogen deaminase HemC SW:HEM3_ECOLI (P06983%3B P78125) (313 aa) fasta scores: E(): 8.4e-30%2C 42.9%25 id in 312 aa. Contains Pfam match to entry PF01379 Porphobil_deam%2C Porphobilinogen deaminase.;gbkey=CDS;gene=hemC;product=porphobilinogen deaminase;protein_id=CAC31937.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2896590	2897477	.	-	.	ID=id-hemC;Note=Pfam match to entry PF01379 Porphobil_deam%2C Porphobilinogen deaminase%2C score 521.80%2C E-value 4.8e-153;gbkey=misc_feature;gene=hemC
AL450380.1	EMBL	gene	2897494	2898897	.	-	.	ID=gene-hemA;Name=hemA;gbkey=Gene;gene=hemA;gene_biotype=protein_coding;gene_synonym=ML2422
AL450380.1	EMBL	CDS	2897494	2898897	.	-	0	ID=cds-CAC31938.1;Parent=gene-hemA;Dbxref=GOA:P46724,InterPro:IPR000343,InterPro:IPR006151,InterPro:IPR015895,InterPro:IPR015896,InterPro:IPR016040,InterPro:IPR018214,NCBI_GP:CAC31938.1;Name=CAC31938.1;Note=Similar to Mycobacterium tuberculosis glutamyl-tRNA reductase Rv0509 SW:HEM1_MYCTU (Q11139) (468 aa) fasta scores: E(): 0%2C 82.3%25 id in 463 aa%2C and to Bacillus subtilis glutamyl-tRNA reductase SW:HEM1_BACSU (P16618) (455 aa) fasta scores: E(): 0%2C 30.3%25 id in 458 aa. Contains Pfam match to entry PF00745 GlutR%2C Glutaminyl-tRNA reductase. Contains PS00747 Glutamyl-tRNA reductase signature.;gbkey=CDS;gene=hemA;product=glutamyl-tRNA reductase;protein_id=CAC31938.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2897617	2898795	.	-	.	ID=id-hemA;Note=Pfam match to entry PF00745 GlutR%2C Glutaminyl-tRNA reductase%2C score 712.50%2C E-value 1.9e-210;gbkey=misc_feature;gene=hemA
AL450380.1	EMBL	sequence_feature	2898532	2898603	.	-	.	ID=id-hemA-2;Note=PS00747 Glutamyl-tRNA reductase signature;gbkey=misc_feature;gene=hemA
AL450380.1	EMBL	pseudogene	2898954	2899247	.	-	.	ID=gene-ML2423;Name=ML2423;gbkey=Gene;gene=ML2423;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2898954	2899247	.	-	0	ID=cds-ML2423;Parent=gene-ML2423;Note=Possible pseudogene of M. tuberculosis orthologue Rv0508 (Best blastx score 249);gbkey=CDS;gene=ML2423;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	2899986	2899992	.	+	.	ID=id-AL450380.1:2899986..2899992;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	2899999	2900901	.	+	.	ID=gene-ML2424;Name=ML2424;gbkey=Gene;gene=ML2424;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2899999	2900901	.	+	0	ID=cds-CAC31940.1;Parent=gene-ML2424;Dbxref=GOA:Q49823,InterPro:IPR006383,InterPro:IPR006385,InterPro:IPR023214,NCBI_GP:CAC31940.1;Name=CAC31940.1;Note=Similar to several including: Mycobacterium tuberculosis phosphoserine phosphatase SerB Rv0505c SW:Y505_MYCTU (Q11169) (373 aa) fasta scores: E(): 0%2C 83.0%25 id in 306 aa.;gbkey=CDS;gene=ML2424;product=conserved hypothetical protein;protein_id=CAC31940.1;transl_table=11
AL450380.1	EMBL	gene	2901005	2901505	.	+	.	ID=gene-ML2425;Name=ML2425;gbkey=Gene;gene=ML2425;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2901005	2901505	.	+	0	ID=cds-CAC31941.1;Parent=gene-ML2425;Dbxref=InterPro:IPR016709,InterPro:IPR029069,NCBI_GP:CAC31941.1;Name=CAC31941.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv0504c SW:Y504_MYCTU (Q11168) (166 aa) fasta scores: E(): 0%2C 83.1%25 id in 166 aa.%3B~Similar to ML1908 and ML1910;gbkey=CDS;gene=ML2425;product=conserved hypothetical protein;protein_id=CAC31941.1;transl_table=11
AL450380.1	EMBL	gene	2901516	2902442	.	+	.	ID=gene-cmaA2;Name=cmaA2;gbkey=Gene;gene=cmaA2;gene_biotype=protein_coding;gene_synonym=ML2426
AL450380.1	EMBL	CDS	2901516	2902442	.	+	0	ID=cds-CAC31942.1;Parent=gene-cmaA2;Dbxref=GOA:Q49807,InterPro:IPR003333,InterPro:IPR029063,NCBI_GP:CAC31942.1;Name=CAC31942.1;Note=Similar to Mycobacterium tuberculosis cyclopropane-fatty-acyl-phospholipid synthase Rv0503c SW:CFA2_MYCTU (Q11196) (302 aa) fasta scores: E(): 0%2C 78.9%25 id in 303 aa.%3B~Similar to ML2459;gbkey=CDS;gene=cmaA2;product=cyclopropane mycolic acid synthase;protein_id=CAC31942.1;transl_table=11
AL450380.1	EMBL	gene	2902471	2903583	.	-	.	ID=gene-ML2427;Name=ML2427;gbkey=Gene;gene=ML2427;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2902471	2903583	.	-	0	ID=cds-CAC31943.1;Parent=gene-ML2427;Dbxref=GOA:P54878,InterPro:IPR002123,InterPro:IPR016676,NCBI_GP:CAC31943.1;Name=CAC31943.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv0502 SW:Y502_MYCTU (Q11167) (358 aa) fasta scores: E(): 0%2C 85.2%25 id in 359 aa. Contains a Pfam match to PF01553 Acyltransferase. Contains Pfam match to entry PF01553 Acyltransferase%2C Acyltransferase.;gbkey=CDS;gene=ML2427;product=conserved hypothetical protein;protein_id=CAC31943.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2902582	2903145	.	-	.	ID=id-ML2427;Note=Pfam match to entry PF01553 Acyltransferase%2C Acyltransferase%2C score 132.40%2C E-value 8.1e-36;gbkey=misc_feature;gene=ML2427
AL450380.1	EMBL	gene	2903580	2904674	.	-	.	ID=gene-ML2428;Name=ML2428;gbkey=Gene;gene=ML2428;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2903580	2904674	.	-	0	ID=cds-CAC31944.1;Parent=gene-ML2428;Dbxref=GOA:Q9CB57,InterPro:IPR001509,InterPro:IPR016040,UniProtKB/TrEMBL:Q9CB57,NCBI_GP:CAC31944.1;Name=CAC31944.1;Note=Similar to Mycobacterium tuberculosis UDP-glucose 4-epimerase Rv0501 SW:Y501_MYCTU (Q11166) (376 aa) fasta scores: E(): 0%2C 84.0%25 id in 368 aa%2C and to Streptomyces violaceoruber dTDP-glucose dehydratase TR:Q56173 (EMBL:L37334) (321 aa) fasta scores: E(): 2.9e-07%2C 30.4%25 id in 332 aa.;gbkey=CDS;gene=ML2428;product=possible glucose epimerase/dehydratase;protein_id=CAC31944.1;transl_table=11
AL450380.1	EMBL	gene	2904745	2904846	.	-	.	ID=gene-ML2428A;Name=ML2428A;gbkey=Gene;gene=ML2428A;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2904745	2904846	.	-	0	ID=cds-CAC31945.1;Parent=gene-ML2428A;Dbxref=InterPro:IPR013177,NCBI_GP:CAC31945.1;Name=CAC31945.1;Note=ML2428A. Orthologue of M. tuberculosis Rv0500B. Conserved hypothetical protein%2C strongly basic. Also similar to Streptomyces coelicolor SCE68.25c%2C hypothetical protein%2C len : 32 aa%3B unknown function%2C possible small%2C lysine-rich protein. FASTA score: gp|AL079345|AL079345_25 Streptomyces coelicolor (32 aa) E(): 1.7e-07%3B 93.103%25 identity in 29 aa overlap;gbkey=CDS;gene=ML2428A;product=CAC31945.1;protein_id=CAC31945.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	2904850	2904853	.	-	.	ID=id-AL450380.1:2904850..2904853;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	2905089	2905349	.	-	.	ID=gene-ML2429;Name=ML2429;gbkey=Gene;gene=ML2429;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2905089	2905349	.	-	0	ID=cds-CAC31946.1;Parent=gene-ML2429;Dbxref=GOA:Q7APU8,InterPro:IPR009061,InterPro:IPR010093,UniProtKB/TrEMBL:Q7APU8,NCBI_GP:CAC31946.1;Name=CAC31946.1;Note=Weakly similar to several including: Streptomyces coelicolor hypothetical protein TR:Q9WX06 (EMBL:AL079345) (70 aa) fasta scores: E(): 3.4e-14%2C 68.3%25 id in 63 aa. Contains a probable helix-turn-helix motif at aa 33-54 (Score 1515%2C SD +4.35) Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML2429;product=possible DNA-binding protein;protein_id=CAC31946.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2905302	2905325	.	-	.	ID=id-ML2429;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML2429
AL450380.1	EMBL	gene	2905490	2906374	.	-	.	ID=gene-proC;Name=proC;gbkey=Gene;gene=proC;gene_biotype=protein_coding;gene_synonym=ML2430
AL450380.1	EMBL	CDS	2905490	2906374	.	-	0	ID=cds-CAC31947.1;Parent=gene-proC;Dbxref=GOA:P46725,InterPro:IPR000304,InterPro:IPR008927,InterPro:IPR016040,InterPro:IPR028939,InterPro:IPR029036,NCBI_GP:CAC31947.1;Name=CAC31947.1;Note=Similar to Mycobacterium tuberculosis pyrroline-5-carboxylate reductase Rv0500 SW:PROC_MYCTU (Q11141) (295 aa) fasta scores: E(): 0%2C 82.4%25 id in 295 aa%2C and to Escherichia coli pyrroline-5-carboxylate reductase SW:PROC_ECOLI (P00373) (269 aa) fasta scores: E(): 1.2e-17%2C 34.0%25 id in 285 aa. Contains Pfam match to entry PF01089 P5CR%2C Delta 1-pyrroline-5-carboxylate reductase. Contains PS00521 Delta 1-pyrroline-5-carboxylate reductase signature.;gbkey=CDS;gene=proC;product=pyrroline-5-carboxylate reductase;protein_id=CAC31947.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2905553	2906359	.	-	.	ID=id-proC;Note=Pfam match to entry PF01089 P5CR%2C Delta 1-pyrroline-5-carboxylate reductase%2C score 408.80%2C E-value 5.2e-119;gbkey=misc_feature;gene=proC
AL450380.1	EMBL	sequence_feature	2905574	2905645	.	-	.	ID=id-proC-2;Note=PS00521 Delta 1-pyrroline-5-carboxylate reductase signature;gbkey=misc_feature;gene=proC
AL450380.1	EMBL	pseudogene	2906420	2907100	.	-	.	ID=gene-ML2431;Name=ML2431;gbkey=Gene;gene=ML2431;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2906420	2907100	.	-	0	ID=cds-ML2431;Parent=gene-ML2431;Note=Possible pseudogene of M. tuberculosis orthologue Rv0499 (Best blastx score 235);gbkey=CDS;gene=ML2431;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2907135	2907977	.	-	.	ID=gene-ML2432;Name=ML2432;gbkey=Gene;gene=ML2432;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2907135	2907977	.	-	0	ID=cds-CAC31949.1;Parent=gene-ML2432;Dbxref=InterPro:IPR013022,NCBI_GP:CAC31949.1;Name=CAC31949.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv0498 SW:Y498_MYCTU (Q11163) (280 aa) fasta scores: E(): 0%2C 89.3%25 id in 280 aa%2C and to Streptomyces coelicolor hypothetical protein TR:Q9X8H0 (EMBL:AL049819) (285 aa) fasta scores: E(): 3.2e-30%2C 51.6%25 id in 273 aa.;gbkey=CDS;gene=ML2432;product=conserved hypothetical protein;protein_id=CAC31949.1;transl_table=11
AL450380.1	EMBL	gene	2908008	2909075	.	-	.	ID=gene-ML2433;Name=ML2433;gbkey=Gene;gene=ML2433;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2908008	2909075	.	-	0	ID=cds-CAC31950.1;Parent=gene-ML2433;Dbxref=GOA:P54580,NCBI_GP:CAC31950.1;Name=CAC31950.1;Note=Similar to Mycobacterium tuberculosis hypothetical 33.1 kda protein Rv0497 SW:Y497_MYCTU (Q11162) (310 aa) fasta scores: E(): 4.6e-21%2C 54.2%25 id in 356 aa. Contains multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2433;product=conserved membrane protein;protein_id=CAC31950.1;transl_table=11
AL450380.1	EMBL	gene	2909072	2910091	.	-	.	ID=gene-ML2434;Name=ML2434;gbkey=Gene;gene=ML2434;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2909072	2910091	.	-	0	ID=cds-CAC31951.1;Parent=gene-ML2434;Dbxref=GOA:P54882,InterPro:IPR003695,NCBI_GP:CAC31951.1;Name=CAC31951.1;Note=Similar to many including: Mycobacterium tuberculosis hypothetical protein Rv0496 SW:Y496_MYCTU (Q11161) (328 aa) fasta scores: E(): 0%2C 85.6%25 id in 327 aa. Also weakly similar to several exopolyphosphatases involved in the degradation of inorganic polyphosphates e.g. Escherichia coli exopolyphosphatase ppx SW:PPX_ECOLI (P29014) (512 aa) fasta scores: E(): 8.4e-09%2C 22.5%25 id in 298 aa.;gbkey=CDS;gene=ML2434;product=conserved hypothetical protein;protein_id=CAC31951.1;transl_table=11
AL450380.1	EMBL	gene	2910195	2911028	.	+	.	ID=gene-ML2435;Name=ML2435;gbkey=Gene;gene=ML2435;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2910195	2911028	.	+	0	ID=cds-CAC31952.1;Parent=gene-ML2435;Dbxref=NCBI_GP:CAC31952.1;Name=CAC31952.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv0495c SW:Y495_MYCTU (Q11160) (296 aa) fasta scores: E(): 0%2C 82.7%25 id in 271 aa%2C and to Streptomyces coelicolor hypothetical protein TR:Q9X8H2 (EMBL:AL049819) (271 aa) fasta scores: E(): 0%2C 48.4%25 id in 250 aa.;gbkey=CDS;gene=ML2435;product=conserved hypothetical protein;protein_id=CAC31952.1;transl_table=11
AL450380.1	EMBL	pseudogene	2911081	2911803	.	-	.	ID=gene-ML2436;Name=ML2436;gbkey=Gene;gene=ML2436;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2911081	2911803	.	-	0	ID=cds-ML2436;Parent=gene-ML2436;Note=Possible pseudogene of M. tuberculosis orthologue Rv0494 (Best blastx score 276);gbkey=CDS;gene=ML2436;product=transcriptional regulator (GntR family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2911951	2912583	.	+	.	ID=gene-ML2437;Name=ML2437;gbkey=Gene;gene=ML2437;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2911951	2912583	.	+	0	ID=cds-ML2437;Parent=gene-ML2437;Note=Possible pseudogene of M. tuberculosis orthologue Rv0493c (Best blastx score 121);gbkey=CDS;gene=ML2437;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2912799	2914361	.	+	.	ID=gene-ML2438;Name=ML2438;gbkey=Gene;gene=ML2438;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2912799	2914361	.	+	0	ID=cds-ML2438;Parent=gene-ML2438;Note=Possible pseudogene of M. tuberculosis orthologue Rv0492c (Best blastx score 274);gbkey=CDS;gene=ML2438;product=gmc-type oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2914489	2915085	.	-	.	ID=gene-ML2439;Name=ML2439;gbkey=Gene;gene=ML2439;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2914489	2915085	.	-	0	ID=cds-CAC31956.1;Parent=gene-ML2439;Dbxref=GOA:P54884,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,NCBI_GP:CAC31956.1;Name=CAC31956.1;Note=Similar to Synechococcus sp alkaline phosphatase synthesis transcriptional regulatory protein SphR SW:SPHR_SYNP7 (P39663) (257 aa) fasta scores: E(): 6.6e-33%2C 47.1%25 id in 206 aa%2C and to Mycobacterium tuberculosis sensory transduction protein RegX3 Rv0491 SW:RGX3_MYCTU (Q11156) (227 aa) fasta scores: E(): 0%2C 95.9%25 id in 197 aa. Contains Pfam match to entry PF00486 trans_reg_C%2C Transcriptional regulatory protein%2C C terminal. Contains Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain.%3B~Similar to several including: ML0773%2C ML0174 and ML2123;gbkey=CDS;gene=ML2439;product=probable two-component system response regulator;protein_id=CAC31956.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2914507	2914725	.	-	.	ID=id-ML2439;Note=Pfam match to entry PF00486 trans_reg_C%2C Transcriptional regulatory protein%2C C terminal%2C score 112.90%2C E-value 1.8e-32;gbkey=misc_feature;gene=ML2439
AL450380.1	EMBL	sequence_feature	2914837	2915082	.	-	.	ID=id-ML2439-2;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 53.30%2C E-value 5.2e-12;gbkey=misc_feature;gene=ML2439
AL450380.1	EMBL	ribosome_entry_site	2915098	2915105	.	-	.	ID=id-AL450380.1:2915098..2915105;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	2915128	2916453	.	-	.	ID=gene-ML2440;Name=ML2440;gbkey=Gene;gene=ML2440;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2915128	2916453	.	-	0	ID=cds-CAC31957.1;Parent=gene-ML2440;Dbxref=GOA:P54883,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,NCBI_GP:CAC31957.1;Name=CAC31957.1;Note=Similar to many proposed two-component sensor histiding kinases including: Mycobacterium tuberculosis sensor-like histidine kinase SenX3 Rv0490 SW:SEX3_MYCTU (Q11155) (410 aa) fasta scores: E(): 0%2C 84.0%25 id in 406 aa%2C and to Mycobacterium bovis sensor-like histidine kinase SenX3 SW:SEX3_MYCBO (O07129) (410 aa) fasta scores: E(): 0%2C 83.7%25 id in 406 aa. Contains Pfam match to entry PF00512 signal%2C Histidine kinase.;gbkey=CDS;gene=ML2440;product=probable two-component system sensor histidine kinase;protein_id=CAC31957.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2915329	2915961	.	-	.	ID=id-ML2440;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 207.40%2C E-value 2.1e-58;gbkey=misc_feature;gene=ML2440
AL450380.1	EMBL	gene	2916616	2917359	.	-	.	ID=gene-gpm;Name=gpm;gbkey=Gene;gene=gpm;gene_biotype=protein_coding;gene_synonym=ML2441
AL450380.1	EMBL	CDS	2916616	2917359	.	-	0	ID=cds-CAC31958.1;Parent=gene-gpm;Dbxref=GOA:P53531,InterPro:IPR001345,InterPro:IPR005952,InterPro:IPR013078,InterPro:IPR029033,NCBI_GP:CAC31958.1;Name=CAC31958.1;Note=EC_number%3DEC 5.4.2.1%3B~Highly similar to many phosphoglycerate mutases including: Streptomyces coelicolor SW:PMGY_STRCO (P33158) (252 aa) fasta scores: E(): 0%2C 66.3%25 id in 240 aa%2C and Mycobacterium tuberculosis phosphoglycerate mutase Rv0489 SW:PMGY_MYCTU (Q11140) (249 aa) fasta scores: E(): 0%2C 89.0%25 id in 236 aa. Contains Pfam match to entry PF00300 PGAM%2C Phosphoglycerate mutase family.;gbkey=CDS;gene=gpm;product=phosphoglycerate mutase;protein_id=CAC31958.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2916694	2917221	.	-	.	ID=id-gpm;Note=Pfam match to entry PF00300 PGAM%2C Phosphoglycerate mutase family%2C score 328.00%2C E-value 1.1e-94;gbkey=misc_feature;gene=gpm
AL450380.1	EMBL	gene	2917372	2917926	.	-	.	ID=gene-ML2442;Name=ML2442;gbkey=Gene;gene=ML2442;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2917372	2917926	.	-	0	ID=cds-CAC31959.1;Parent=gene-ML2442;Dbxref=InterPro:IPR019660,NCBI_GP:CAC31959.1;Name=CAC31959.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv0487 SW:Y487_MYCTU (Q11153) (183 aa) fasta scores: E(): 0%2C 69.2%25 id in 172 aa.;gbkey=CDS;gene=ML2442;product=conserved hypothetical protein;protein_id=CAC31959.1;transl_table=11
AL450380.1	EMBL	gene	2918000	2919286	.	-	.	ID=gene-ML2443;Name=ML2443;gbkey=Gene;gene=ML2443;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2918000	2919286	.	-	0	ID=cds-CAC31960.1;Parent=gene-ML2443;Dbxref=GOA:P54138,InterPro:IPR001296,InterPro:IPR017814,InterPro:IPR028098,NCBI_GP:CAC31960.1;Name=CAC31960.1;Note=Similar to many proteins on undefined function and possible transferases including: Mycobacterium tuberculosis hypothetical 50.5 kda protein Rv0486 SW:Y486_MYCTU (Q11152) (480 aa) fasta scores: E(): 0%2C 86.6%25 id in 432 aa%2C and to Streptomyces coelicolor putative transferase TR:Q9Z5B7 (EMBL:AL035478) (406 aa) fasta scores: E(): 1.7e-30%2C 34.2%25 id in 401 aa. Contains Pfam match to entry PF00534 Glycos_transf_1%2C Glycosyl transferases group 1.;gbkey=CDS;gene=ML2443;product=possible glycosyl transferase;protein_id=CAC31960.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2918162	2918680	.	-	.	ID=id-ML2443;Note=Pfam match to entry PF00534 Glycos_transf_1%2C Glycosyl transferases group 1%2C score 158.90%2C E-value 8.4e-44;gbkey=misc_feature;gene=ML2443
AL450380.1	EMBL	pseudogene	2919421	2920397	.	-	.	ID=gene-ML2444;Name=ML2444;gbkey=Gene;gene=ML2444;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2919421	2920397	.	-	0	ID=cds-ML2444;Parent=gene-ML2444;Note=Possible pseudogene of M. tuberculosis orthologue Rv0485 (Best blastx score 222);gbkey=CDS;gene=ML2444;product=transcriptional regulator (ROK family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2920665	2921396	.	+	.	ID=gene-ML2445;Name=ML2445;gbkey=Gene;gene=ML2445;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2920665	2921396	.	+	0	ID=cds-ML2445;Parent=gene-ML2445;Note=Possible pseudogene of M. tuberculosis orthologue Rv0484c (Best blastx score 429);gbkey=CDS;gene=ML2445;product=oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2921383	2922708	.	-	.	ID=gene-ML2446;Name=ML2446;gbkey=Gene;gene=ML2446;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2921383	2922708	.	-	0	ID=cds-CAC31963.1;Parent=gene-ML2446;Dbxref=GOA:Q9CB49,InterPro:IPR005490,UniProtKB/TrEMBL:Q9CB49,NCBI_GP:CAC31963.1;Name=CAC31963.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv0483 SW:Y483_MYCTU (Q11149) fasta scores: E(): 0%2C 79.3%25 id in 439 aa%2C and to Streptomyces coelicolor putative lipoprotein TR:CAB76012 (EMBL:AL157916) fasta scores: E(): 2.5e-24%2C 28.6%25 id in 405 aa. Contains a possible N-terminal signal sequence and an appropriately positioned Prokaryotic membrane lipoprotein lipid attachment site. Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.%3B~Similar to ML0426;gbkey=CDS;gene=ML2446;product=possible lipoprotein;protein_id=CAC31963.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2922604	2922636	.	-	.	ID=id-ML2446;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=ML2446
AL450380.1	EMBL	gene	2922789	2923892	.	-	.	ID=gene-murB;Name=murB;gbkey=Gene;gene=murB;gene_biotype=protein_coding;gene_synonym=ML2447
AL450380.1	EMBL	CDS	2922789	2923892	.	-	0	ID=cds-CAC31964.1;Parent=gene-murB;Dbxref=GOA:Q9CB48,InterPro:IPR003170,InterPro:IPR006094,InterPro:IPR011601,InterPro:IPR016166,InterPro:IPR016167,InterPro:IPR016169,NCBI_GP:CAC31964.1;Name=CAC31964.1;Note=Similar to Mycobacterium tuberculosis UDP-N-acetylenolpyruvoylglucosamine reductase Rv0482 SW:MURB_MYCTU (Q11148) fasta scores: E(): 0%2C 79.0%25 id in 372 aa%2C and to Escherichia coli UDP-N-acetylenolpyruvoylglucosamine reductase MurB SW:MURB_ECOLI (P08373) fasta scores: E(): 3.6e-12%2C 35.5%25 id in 352 aa. Contains Pfam match to entry PF02215 MurB%2C UDP-N-acetylenolpyruvoylglucosamine reductase.;gbkey=CDS;gene=murB;product=UDP-N-acetylenolpyruvoylglucosamine reductase;protein_id=CAC31964.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2922804	2923598	.	-	.	ID=id-murB;Note=Pfam match to entry PF02215 MurB%2C UDP-N-acetylenolpyruvoylglucosamine reductase%2C score 359.90%2C E-value 2.6e-104;gbkey=misc_feature;gene=murB
AL450380.1	EMBL	pseudogene	2923919	2924451	.	+	.	ID=gene-ML2448;Name=ML2448;gbkey=Gene;gene=ML2448;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2923919	2924451	.	+	0	ID=cds-ML2448;Parent=gene-ML2448;Note=Possible pseudogene of M. tuberculosis orthologue Rv0481c (Best blastx score 147);gbkey=CDS;gene=ML2448;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2924641	2925456	.	+	.	ID=gene-ML2449;Name=ML2449;gbkey=Gene;gene=ML2449;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2924641	2925456	.	+	0	ID=cds-CAC31966.1;Parent=gene-ML2449;Dbxref=GOA:Q9CB47,InterPro:IPR001110,InterPro:IPR003010,UniProtKB/TrEMBL:Q9CB47,NCBI_GP:CAC31966.1;Name=CAC31966.1;Note=Similar to several including: Mycobacterium tuberculosis hypothetical protein Rv0480c SW:Y480_MYCTU (Q11146) fasta scores: E(): 0%2C 81.9%25 id in 270 aa%2C and to Streptomyces coelicolor putative hydrolase TR:Q9XA70 (EMBL:AL096822) fasta scores: E(): 1.5e-16%2C 34.9%25 id in 272 aa. Contains Pfam match to entry PF00795 CN_hydrolase%2C Carbon-nitrogen hydrolase. Contains PS01227 Uncharacterized protein family UPF0012 signature.;gbkey=CDS;gene=ML2449;product=putative hydrolase;protein_id=CAC31966.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2924641	2925450	.	+	.	ID=id-ML2449;Note=Pfam match to entry PF00795 CN_hydrolase%2C Carbon-nitrogen hydrolase%2C score 243.60%2C E-value 2.8e-69;gbkey=misc_feature;gene=ML2449
AL450380.1	EMBL	sequence_feature	2925064	2925126	.	+	.	ID=id-ML2449-2;Note=PS01227 Uncharacterized protein family UPF0012 signature;gbkey=misc_feature;gene=ML2449
AL450380.1	EMBL	gene	2925762	2926499	.	+	.	ID=gene-ML2450;Name=ML2450;gbkey=Gene;gene=ML2450;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2925762	2926499	.	+	0	ID=cds-CAC31967.1;Parent=gene-ML2450;Dbxref=InterPro:IPR021373,UniProtKB/TrEMBL:Q9CB46,NCBI_GP:CAC31967.1;Name=CAC31967.1;Note=Similar to the C-terminal region of Mycobacterium tuberculosis hypothetical protein Rv0479c SW:Y479_MYCTU (Q11145) fasta scores: E(): 0%2C 70.0%25 id in 243 aa. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=ML2450;product=possible secreted protein;protein_id=CAC31967.1;transl_table=11
AL450380.1	EMBL	gene	2926556	2927236	.	-	.	ID=gene-deoC;Name=deoC;gbkey=Gene;gene=deoC;gene_biotype=protein_coding;gene_synonym=ML2451
AL450380.1	EMBL	CDS	2926556	2927236	.	-	0	ID=cds-CAC31968.1;Parent=gene-deoC;Dbxref=GOA:Q9CB45,InterPro:IPR002915,InterPro:IPR011343,InterPro:IPR013785,InterPro:IPR028581,NCBI_GP:CAC31968.1;Name=CAC31968.1;Note=Similar to Mycobacterium tuberculosis deoxyribose-phosphate aldolase Rv0478 SW:DEOC_MYCTU (Q11138) fasta scores: E(): 0%2C 78.6%25 id in 224 aa%2C and to Bacillus subtilis deoxyribose-phosphate aldolase DeoC SW:DEOC_BACSU (P39121) fasta scores: E(): 9.9e-24%2C 44.7%25 id in 206 aa. Contains Pfam match to entry PF01791 DeoC%2C Deoxyribose-phosphate aldolase.;gbkey=CDS;gene=deoC;product=deoxyribose-phosphate aldolase;protein_id=CAC31968.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2926568	2927215	.	-	.	ID=id-deoC;Note=Pfam match to entry PF01791 DeoC%2C Deoxyribose-phosphate aldolase%2C score 288.00%2C E-value 1.2e-82;gbkey=misc_feature;gene=deoC
AL450380.1	EMBL	gene	2927236	2927607	.	-	.	ID=gene-ML2452;Name=ML2452;gbkey=Gene;gene=ML2452;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2927236	2927607	.	-	0	ID=cds-CAC31969.1;Parent=gene-ML2452;Dbxref=InterPro:IPR019719,NCBI_GP:CAC31969.1;Name=CAC31969.1;Note=Weakly similar in parts to Mycobacterium tuberculosis hypothetical protein Rv0477 SW:Y477_MYCTU (Q11144) fasta scores: E(): 1.8e-23%2C 57.3%25 id in 110 aa.;gbkey=CDS;gene=ML2452;product=hypothetical protein;protein_id=CAC31969.1;transl_table=11
AL450380.1	EMBL	gene	2927710	2927997	.	-	.	ID=gene-ML2453;Name=ML2453;gbkey=Gene;gene=ML2453;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2927710	2927997	.	-	0	ID=cds-CAC31970.1;Parent=gene-ML2453;Dbxref=GOA:Q9CB43,InterPro:IPR019662,NCBI_GP:CAC31970.1;Name=CAC31970.1;Note=Similar to Mycobacterium tuberculosis hypothetical rv0476 precursor rv0476 or mtcy20g9.02 SW:Y476_MYCTU (Q11143) fasta scores: E(): 1.6e-24%2C 83.9%25 id in 87 aa. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2453;product=conserved membrane protein;protein_id=CAC31970.1;transl_table=11
AL450380.1	EMBL	gene	2928117	2928683	.	-	.	ID=gene-ML2454;Name=ML2454;gbkey=Gene;gene=ML2454;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2928117	2928683	.	-	0	ID=cds-CAC31971.1;Parent=gene-ML2454;Dbxref=GOA:Q9CB42,InterPro:IPR020340,NCBI_GP:CAC31971.1;Name=CAC31971.1;Note=Similar to Mycobacterium tuberculosis heparin-binding hemagglutinin TR:O85733 (EMBL:AF074390) fasta scores: E(): 0%2C 81.4%25 id in 199 aa. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=ML2454;product=possible hemagglutinin.;protein_id=CAC31971.1;transl_table=11
AL450380.1	EMBL	repeat_region	2928131	2928175	.	+	.	ID=id-AL450380.1:2928131..2928175;Note=3 copies of 15 bp tandem repeat Consensus%2C CCTTCTTGGCCGGAG;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2928926	2929326	.	-	.	ID=gene-ML2455;Name=ML2455;gbkey=Gene;gene=ML2455;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2928926	2929326	.	-	0	ID=cds-ML2455;Parent=gene-ML2455;Note=Possible pseudogene of M. tuberculosis orthologue Rv0474 (Best blastx score 189);gbkey=CDS;gene=ML2455;product=transcriptional regulator (PbsX/Xre family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2929430	2930034	.	-	.	ID=gene-ML2456;Name=ML2456;gbkey=Gene;gene=ML2456;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2929430	2930034	.	-	0	ID=cds-ML2456;Parent=gene-ML2456;Note=Possible pseudogene of M. tuberculosis orthologue Rv0473 (Best blastx score 282);gbkey=CDS;gene=ML2456;product=possible membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2930178	2930879	.	+	.	ID=gene-ML2457;Name=ML2457;gbkey=Gene;gene=ML2457;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2930178	2930879	.	+	0	ID=cds-CAC31974.1;Parent=gene-ML2457;Dbxref=GOA:Q9CB41,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR011075,InterPro:IPR015893,UniProtKB/TrEMBL:Q9CB41,NCBI_GP:CAC31974.1;Name=CAC31974.1;Note=Similar several putative trancriptional regulators e.g. Mycobacterium tuberculosis putative regulatory protein Rv0472c TR:O53757 (EMBL:AL021933) fasta scores: E(): 0%2C 88.8%25 id in 232 aa. Contains a probable helix-turn-helix motif at aa 45-66 (Score 1345%2C SD +3.77) Contains Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family.;gbkey=CDS;gene=ML2457;product=possible TetR-family transcriptional regulator;protein_id=CAC31974.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2930265	2930402	.	+	.	ID=id-ML2457;Note=Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family%2C score 29.40%2C E-value 6.9e-06;gbkey=misc_feature;gene=ML2457
AL450380.1	EMBL	pseudogene	2930918	2931247	.	+	.	ID=gene-ML2458;Name=ML2458;gbkey=Gene;gene=ML2458;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2930918	2931247	.	+	0	ID=cds-ML2458;Parent=gene-ML2458;Note=Possible pseudogene of M. tuberculosis orthologue Rv0471c (Best blastx score 123);gbkey=CDS;gene=ML2458;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2932062	2932949	.	+	.	ID=gene-umaA2;Name=umaA2;gbkey=Gene;gene=umaA2;gene_biotype=protein_coding;gene_synonym=ML2459
AL450380.1	EMBL	CDS	2932062	2932949	.	+	0	ID=cds-CAC31976.1;Parent=gene-umaA2;Dbxref=GOA:Q9CB40,InterPro:IPR003333,InterPro:IPR029063,UniProtKB/TrEMBL:Q9CB40,NCBI_GP:CAC31976.1;Name=CAC31976.1;Note=Highly similar to many mycobacterial mycolic acid synthases including: Mycobacterium tuberculosis cyclopropane-fatty-acyl-phospholipid synthase 1 Rv3392c SW:CFA1_MYCTU (Q11195) fasta scores: E(): 0%2C 69.0%25 id in 287 aa and to Mycobacterium bovis methyl mycolic acid synthase 3 mma3 TR:P94924 (EMBL:U77466) fasta scores: E(): 0%2C 61.1%25 id in 293 aa.%3B~Similar to ML1900 and ML1903;gbkey=CDS;gene=umaA2;product=Mycolic acid synthase;protein_id=CAC31976.1;transl_table=11
AL450380.1	EMBL	repeat_region	2932108	2932168	.	+	.	ID=id-umaA2;Note=61 bp repeat. 86%25 identical to positions 2285671..2285731 (53/61);gbkey=repeat_region;gene=umaA2
AL450380.1	EMBL	repeat_region	2932164	2932867	.	+	.	ID=id-umaA2-2;Note=704 bp repeat%3B 100%25 identical to complement(2933129..2933832);gbkey=repeat_region;gene=umaA2
AL450380.1	EMBL	pseudogene	2933076	2933933	.	-	.	ID=gene-umaA1;Name=umaA1;gbkey=Gene;gene=umaA1;gene_biotype=pseudogene;gene_synonym=ML2460;pseudo=true
AL450380.1	EMBL	CDS	2933076	2933933	.	-	0	ID=cds-umaA1;Parent=gene-umaA1;Note=Possible pseudogene of M. tuberculosis orthologue umaA1 (Best blastx score 697);gbkey=CDS;gene=umaA1;product=unknown mycolic acid methyltransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2933129	2933832	.	-	.	ID=id-umaA1;Note=704 bp repeat%3B 100%25 identical to complement(2932164..2932867);gbkey=repeat_region;gene=umaA1;pseudo=true
AL450380.1	EMBL	gene	2934086	2934949	.	-	.	ID=gene-fadB2;Name=fadB2;gbkey=Gene;gene=fadB2;gene_biotype=protein_coding;gene_synonym=ML2461
AL450380.1	EMBL	CDS	2934086	2934949	.	-	0	ID=cds-CAC31978.1;Parent=gene-fadB2;Dbxref=GOA:Q9CB39,InterPro:IPR006108,InterPro:IPR006176,InterPro:IPR008927,InterPro:IPR013328,InterPro:IPR016040,InterPro:IPR022694,UniProtKB/TrEMBL:Q9CB39,NCBI_GP:CAC31978.1;Name=CAC31978.1;Note=Similar to Mycobacterium tuberculosis putative 3-hydroxyacyl-CoA dehydrogenase Rv0468 TR:O53753 (EMBL:AL021933) fasta scores: E(): 0%2C 89.5%25 id in 287 aa%2C and to Clostridium acetobutylicum 3-hydroxybutyryl-CoA dehydrogenase SW:HBD_CLOAB (P52041) fasta scores: E(): 0%2C 43.3%25 id in 282 aa. Contains Pfam match to entry PF00725 3HCDH%2C 3-hydroxyacyl-CoA dehydrogenase.;gbkey=CDS;gene=fadB2;product=3-hydroxyacyl-CoA dehydrogenase;protein_id=CAC31978.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2934089	2934925	.	-	.	ID=id-fadB2;Note=Pfam match to entry PF00725 3HCDH%2C 3-hydroxyacyl-CoA dehydrogenase%2C score 347.40%2C E-value 1.5e-100;gbkey=misc_feature;gene=fadB2
AL450380.1	EMBL	pseudogene	2935181	2936437	.	-	.	ID=gene-icl;Name=icl;gbkey=Gene;gene=icl;gene_biotype=pseudogene;gene_synonym=ML2462;pseudo=true
AL450380.1	EMBL	CDS	2935181	2936437	.	-	0	ID=cds-icl;Parent=gene-icl;Note=Possible pseudogene of M. tuberculosis orthologue icl (Rv0467) (Best blastx score 511);gbkey=CDS;gene=icl;product=isocitrate lyase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2936751	2937545	.	-	.	ID=gene-ML2463;Name=ML2463;gbkey=Gene;gene=ML2463;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2936751	2937545	.	-	0	ID=cds-CAC31980.1;Parent=gene-ML2463;Dbxref=GOA:Q9CB38,InterPro:IPR002864,InterPro:IPR029069,UniProtKB/TrEMBL:Q9CB38,NCBI_GP:CAC31980.1;Name=CAC31980.1;Note=Similar to Mycobacterium tuberculosis hypothetical 30.2 kda protein Rv0466 TR:O53751 (EMBL:AL021933) fasta scores: E(): 0%2C 87.1%25 id in 264 aa.;gbkey=CDS;gene=ML2463;product=conserved hypothetical protein;protein_id=CAC31980.1;transl_table=11
AL450380.1	EMBL	pseudogene	2937776	2939171	.	+	.	ID=gene-ML2464;Name=ML2464;gbkey=Gene;gene=ML2464;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2937776	2939171	.	+	0	ID=cds-ML2464;Parent=gene-ML2464;Note=Possible pseudogene of M. tuberculosis orthologue Rv0465c (Best blastx score 434);gbkey=CDS;gene=ML2464;product=transcriptional regulator (PbsX/Xre family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2939177	2939743	.	+	.	ID=gene-ML2465;Name=ML2465;gbkey=Gene;gene=ML2465;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2939177	2939743	.	+	0	ID=cds-CAC31982.1;Parent=gene-ML2465;Dbxref=GOA:Q9CB37,InterPro:IPR003779,InterPro:IPR029032,UniProtKB/TrEMBL:Q9CB37,NCBI_GP:CAC31982.1;Name=CAC31982.1;Note=Similar to Mycobacterium tuberculosis hypothetical 21.3 kda protein Rv0464c TR:O53749 (EMBL:AL021933) fasta scores: E(): 0%2C 67.4%25 id in 187 aa.;gbkey=CDS;gene=ML2465;product=conserved hypothetical protein;protein_id=CAC31982.1;transl_table=11
AL450380.1	EMBL	repeat_region	2939794	2939821	.	-	.	ID=id-AL450380.1:2939794..2939821;Note=28 bp subsequence of 45-bp REPLEP-associated sequence but not linked to REPLEP in this case;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2940000	2940681	.	-	.	ID=gene-ML2466;Name=ML2466;gbkey=Gene;gene=ML2466;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2940000	2940681	.	-	0	ID=cds-ML2466;Parent=gene-ML2466;Note=Possible pseudogene of M. tuberculosis orthologue Rv1085c (Best blastx score 150);gbkey=CDS;gene=ML2466;product=possible hemolysin (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2940904	2941692	.	+	.	ID=gene-ML2467;Name=ML2467;gbkey=Gene;gene=ML2467;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2940904	2941692	.	+	0	ID=cds-CAC31984.1;Parent=gene-ML2467;Dbxref=GOA:Q9CB36,InterPro:IPR001441,InterPro:IPR018520,NCBI_GP:CAC31984.1;Name=CAC31984.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv1086 SW:YA86_MYCTU (O53434) fasta scores: E(): 0%2C 90.5%25 id in 262 aa and to Synechocystis sp. undecaprenyl pyrophosphate synthetase SW:UPPS_SYNY3 (Q55482) fasta scores: E(): 5.2e-29%2C 40.2%25 id in 239 aa. Contains Pfam match to entry PF01255 UPP_synthetase%2C Putative undecaprenyl diphosphate synthase. Contains PS01066 Undecaprenyl pyrophosphate synthetase family signature.;gbkey=CDS;gene=ML2467;product=possible undecaprenyl pyrophosphate synthetase;protein_id=CAC31984.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2941015	2941689	.	+	.	ID=id-ML2467;Note=Pfam match to entry PF01255 UPP_synthetase%2C Putative undecaprenyl diphosphate synthase%2C score 339.70%2C E-value 3.2e-98;gbkey=misc_feature;gene=ML2467
AL450380.1	EMBL	sequence_feature	2941522	2941575	.	+	.	ID=id-ML2467-2;Note=PS01066 Undecaprenyl pyrophosphate synthetase family signature;gbkey=misc_feature;gene=ML2467
AL450380.1	EMBL	gene	2942027	2942407	.	-	.	ID=gene-ML2468;Name=ML2468;gbkey=Gene;gene=ML2468;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2942027	2942407	.	-	0	ID=cds-CAC31985.1;Parent=gene-ML2468;Dbxref=UniProtKB/TrEMBL:Q9CB35,NCBI_GP:CAC31985.1;Name=CAC31985.1;Note=function unknown.;gbkey=CDS;gene=ML2468;product=hypothetical protein;protein_id=CAC31985.1;transl_table=11
AL450380.1	EMBL	repeat_region	2943388	2944221	.	+	.	ID=id-AL450380.1:2943388..2944221;Note=Dispersed repeat%2C RLEP%2C copy 36;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2944202	2944942	.	+	.	ID=gene-proV;Name=proV;gbkey=Gene;gene=proV;gene_biotype=pseudogene;gene_synonym=ML2469;pseudo=true
AL450380.1	EMBL	CDS	2944202	2944942	.	+	0	ID=cds-proV;Parent=gene-proV;Note=Possible pseudogene of M. tuberculosis orthologue proV (Best blastx score 167);gbkey=CDS;gene=proV;product=osmoprotection ABC transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2945487	2945555	.	+	.	ID=id-AL450380.1:2945487..2945555;Note=3 copies of 23 bp repeat%2C Consensus ATAATACTGTAGTGAACGACATC;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2945772	2946445	.	+	.	ID=gene-proZ;Name=proZ;gbkey=Gene;gene=proZ;gene_biotype=pseudogene;gene_synonym=ML2470;pseudo=true
AL450380.1	EMBL	CDS	2945772	2946445	.	+	0	ID=cds-proZ;Parent=gene-proZ;Note=Possible pseudogene of M. tuberculosis orthologue proZ (Best blastx score 114);gbkey=CDS;gene=proZ;product=transport system permease (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2946632	2947189	.	+	.	ID=gene-ML2471;Name=ML2471;gbkey=Gene;gene=ML2471;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2946632	2947189	.	+	0	ID=cds-ML2471;Parent=gene-ML2471;Note=Possible pseudogene of M. tuberculosis orthologue Rv3755c (Best blastx score 319);gbkey=CDS;gene=ML2471;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2947158	2948141	.	-	.	ID=gene-ML2472;Name=ML2472;gbkey=Gene;gene=ML2472;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2947158	2948141	.	-	0	ID=cds-CAC31989.1;Parent=gene-ML2472;Dbxref=GOA:Q9CB34,InterPro:IPR003099,InterPro:IPR008927,InterPro:IPR016040,UniProtKB/TrEMBL:Q9CB34,NCBI_GP:CAC31989.1;Name=CAC31989.1;Note=Similar to Mycobacterium tuberculosis putative oxidoreductase Rv3754 TR:O69721 (EMBL:AL022121) fasta scores: E(): 0%2C 80.0%25 id in 300 aa and to Bacillus subtilis prephenate dehydrogenase TyrA SW:TYRA_BACSU (P20692) fasta scores: E(): 1.6e-15%2C 29.1%25 id in 285 aa. Contains Pfam match to entry PF02153 PDH%2C Prephenate dehydrogenase.;gbkey=CDS;gene=ML2472;product=possible prephenate dehydrogenase;protein_id=CAC31989.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2947296	2948093	.	-	.	ID=id-ML2472;Note=Pfam match to entry PF02153 PDH%2C Prephenate dehydrogenase%2C score 286.60%2C E-value 3.2e-82;gbkey=misc_feature;gene=ML2472
AL450380.1	EMBL	gene	2948272	2948751	.	+	.	ID=gene-ML2473;Name=ML2473;gbkey=Gene;gene=ML2473;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2948272	2948751	.	+	0	ID=cds-CAC31990.1;Parent=gene-ML2473;Dbxref=InterPro:IPR023869,UniProtKB/TrEMBL:Q9CB33,NCBI_GP:CAC31990.1;Name=CAC31990.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv3753c TR:O69720 (EMBL:AL022121) fasta scores: E(): 0%2C 88.3%25 id in 163 aa.;gbkey=CDS;gene=ML2473;product=conserved hypothetical protein;protein_id=CAC31990.1;transl_table=11
AL450380.1	EMBL	gene	2948766	2949281	.	+	.	ID=gene-ML2474;Name=ML2474;gbkey=Gene;gene=ML2474;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2948766	2949281	.	+	0	ID=cds-CAC31991.1;Parent=gene-ML2474;Dbxref=GOA:Q9CB32,InterPro:IPR002125,InterPro:IPR016192,InterPro:IPR016193,InterPro:IPR028883,UniProtKB/TrEMBL:Q9CB32,NCBI_GP:CAC31991.1;Name=CAC31991.1;Note=Similar to several including: Mycobacterium tuberculosis probable cytidine/deoxycytidylate deaminase Rv3752c TR:O69719 (EMBL:AL022121) fasta scores: E(): 0%2C 87.4%25 id in 151 aa%2C and to Neisseria meningitidis putative cytosine deaminase TR:CAB84390 (EMBL:AL162755) fasta scores: E(): 2e-19%2C 42.9%25 id in 147 aa. Contains Pfam match to entry PF00383 dCMP_cyt_deam%2C Cytidine and deoxycytidylate deaminase zinc-binding region. Contains PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature.;gbkey=CDS;gene=ML2474;product=possible cytidine/deoxycytidylate deaminase;protein_id=CAC31991.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2948856	2949101	.	+	.	ID=id-ML2474;Note=Pfam match to entry PF00383 dCMP_cyt_deam%2C Cytidine and deoxycytidylate deaminase zinc-binding region%2C score 102.40%2C E-value 9e-27;gbkey=misc_feature;gene=ML2474
AL450380.1	EMBL	sequence_feature	2948961	2949077	.	+	.	ID=id-ML2474-2;Note=PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature;gbkey=misc_feature;gene=ML2474
AL450380.1	EMBL	gene	2949298	2949388	.	+	.	ID=gene-serX;Name=serX;gbkey=Gene;gene=serX;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	2949298	2949388	.	+	.	ID=rna-serX;Parent=gene-serX;Note=tRNA Ser anticodon CGA%2C Cove score 64.30;gbkey=tRNA;gene=serX;product=tRNA-Ser
AL450380.1	EMBL	exon	2949298	2949388	.	+	.	ID=exon-serX-1;Parent=rna-serX;Note=tRNA Ser anticodon CGA%2C Cove score 64.30;gbkey=tRNA;gene=serX;product=tRNA-Ser
AL450380.1	EMBL	pseudogene	2949479	2950370	.	-	.	ID=gene-ML2475;Name=ML2475;gbkey=Gene;gene=ML2475;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2949479	2950370	.	-	0	ID=cds-ML2475;Parent=gene-ML2475;Note=Possible pseudogene of M. tuberculosis orthologue Rv2277c (Best blastx score 197);gbkey=CDS;gene=ML2475;product=possible glycerolphosphodiesterase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2950639	2950806	.	-	.	ID=gene-ML2476;Name=ML2476;gbkey=Gene;gene=ML2476;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2950639	2950806	.	-	0	ID=cds-CAC31993.1;Parent=gene-ML2476;Dbxref=InterPro:IPR002765,UniProtKB/TrEMBL:Q9CB31,NCBI_GP:CAC31993.1;Name=CAC31993.1;Note=Similar in parts to several proteins of undefined function e.g. Streptomyces coelicolor hypothetical protein TR:Q9X8J2 (EMBL:AL049841) fasta scores: E(): 5.6e-10%2C 53.1%25 id in 64 aa.;gbkey=CDS;gene=ML2476;product=hypothetical protein;protein_id=CAC31993.1;transl_table=11
AL450380.1	EMBL	pseudogene	2951995	2952237	.	+	.	ID=gene-ML2477;Name=ML2477;gbkey=Gene;gene=ML2477;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2951995	2952237	.	+	0	ID=cds-ML2477;Parent=gene-ML2477;Note=Possible pseudogene of M. tuberculosis orthologue PE protein.;gbkey=CDS;gene=ML2477;product=PE protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2952757	2953146	.	-	.	ID=gene-ML2478;Name=ML2478;gbkey=Gene;gene=ML2478;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2952757	2953146	.	-	0	ID=cds-CAC31995.1;Parent=gene-ML2478;Dbxref=UniProtKB/TrEMBL:Q9CB30,NCBI_GP:CAC31995.1;Name=CAC31995.1;Note=doubtful CDS.;gbkey=CDS;gene=ML2478;product=hypothetical protein;protein_id=CAC31995.1;transl_table=11
AL450380.1	EMBL	repeat_region	2953200	2953232	.	+	.	ID=id-AL450380.1:2953200..2953232;Note=33 bp sequence found at 5'-end of copies 2 and 7 of LEPREP;gbkey=repeat_region
AL450380.1	EMBL	repeat_region	2953233	2953804	.	+	.	ID=id-AL450380.1:2953233..2953804;Note=Dispersed repeat%2C LEPREP%2C copy 8%3B truncated at 3'-end;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2955106	2956280	.	-	.	ID=gene-ML2479;Name=ML2479;gbkey=Gene;gene=ML2479;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2955106	2956280	.	-	0	ID=cds-ML2479;Parent=gene-ML2479;Note=Possible pseudogene of M. tuberculosis orthologue Rv0368c (Best blastx score 326);gbkey=CDS;gene=ML2479;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2956312	2956856	.	-	.	ID=gene-ML2480;Name=ML2480;gbkey=Gene;gene=ML2480;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2956312	2956856	.	-	0	ID=cds-ML2480;Parent=gene-ML2480;Note=Possible pseudogene of M. tuberculosis orthologue Rv0369c (Best blastx score 241);gbkey=CDS;gene=ML2480;product=putative CO dehydrogenase gene cluster (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2957002	2957698	.	-	.	ID=gene-ML2481;Name=ML2481;gbkey=Gene;gene=ML2481;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2957002	2957698	.	-	0	ID=cds-ML2481;Parent=gene-ML2481;Note=Possible pseudogene of M. tuberculosis orthologue Rv0370c (Best blastx score 159);gbkey=CDS;gene=ML2481;product=putative CO dehydrogenase gene cluster (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2957685	2958093	.	-	.	ID=gene-ML2482;Name=ML2482;gbkey=Gene;gene=ML2482;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2957685	2958093	.	-	0	ID=cds-ML2482;Parent=gene-ML2482;Note=Possible pseudogene of M. tuberculosis orthologue Rv0371c (Best blastx score 148);gbkey=CDS;gene=ML2482;product=Possible membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2958124	2958517	.	-	.	ID=gene-ML2483;Name=ML2483;gbkey=Gene;gene=ML2483;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2958124	2958517	.	-	0	ID=cds-ML2483;Parent=gene-ML2483;Note=Possible pseudogene of M. tuberculosis orthologue Rv0372c (Best blastx score 190);gbkey=CDS;gene=ML2483;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2958704	2959369	.	+	.	ID=gene-ML2484;Name=ML2484;gbkey=Gene;gene=ML2484;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2958704	2959369	.	+	0	ID=cds-ML2484;Parent=gene-ML2484;Note=Possible pseudogene of M. tuberculosis orthologue Rv0377 (Best blastx score 299);gbkey=CDS;gene=ML2484;product=transcriptional regulator (LysR family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2959460	2960008	.	-	.	ID=gene-ML2485;Name=ML2485;gbkey=Gene;gene=ML2485;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2959460	2960008	.	-	0	ID=cds-CAC32002.1;Parent=gene-ML2485;Dbxref=GOA:Q9CB29,InterPro:IPR001537,InterPro:IPR029026,InterPro:IPR029028,UniProtKB/TrEMBL:Q9CB29,NCBI_GP:CAC32002.1;Name=CAC32002.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv0380c TR:O53715 (EMBL:AL021931) fasta scores: E(): 0%2C 89.0%25 id in 182 aa%2C and to Escherichia coli SpoU SW:TRMH_ECOLI (P19396) fasta scores: E(): 6.1e-07%2C 26.2%25 id in 164 aa. Contains Pfam match to entry PF00588 SpoU_methylase%2C SpoU rRNA Methylase family.;gbkey=CDS;gene=ML2485;product=possible RNA methyltransferase;protein_id=CAC32002.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2959502	2959915	.	-	.	ID=id-ML2485;Note=Pfam match to entry PF00588 SpoU_methylase%2C SpoU rRNA Methylase family%2C score 55.50%2C E-value 1.1e-12;gbkey=misc_feature;gene=ML2485
AL450380.1	EMBL	pseudogene	2960104	2960940	.	-	.	ID=gene-ML2486;Name=ML2486;gbkey=Gene;gene=ML2486;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2960104	2960940	.	-	0	ID=cds-ML2486;Parent=gene-ML2486;Note=Possible pseudogene of M. tuberculosis orthologue Rv0381c (Best blastx score 524);gbkey=CDS;gene=ML2486;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2961000	2961539	.	-	.	ID=gene-ML2487;Name=ML2487;gbkey=Gene;gene=ML2487;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2961000	2961539	.	-	0	ID=cds-CAC32004.1;Parent=gene-ML2487;Dbxref=GOA:Q9CB28,InterPro:IPR000836,InterPro:IPR004467,InterPro:IPR023031,InterPro:IPR029057,NCBI_GP:CAC32004.1;Name=CAC32004.1;Note=Similar to Mycobacterium tuberculosis uridine 5'-monophosphate synthase ump or rv0382c or mtv036.17c TR:O53717 (EMBL:AL021931) fasta scores: E(): 0%2C 86.2%25 id in 174 aa%2C and to Pyrococcus abyssi orotate phosphoribosyltransferase pyre or pab2430 SW:PYRE_PYRAB (P56814) fasta scores: E(): 7.6e-16%2C 37.1%25 id in 175 aa. Contains Pfam match to entry PF00156 Pribosyltran%2C Phosphoribosyl transferase domain. Contains PS00589 PTS HPR component serine phosphorylation site signature.;gbkey=CDS;gene=ML2487;product=probable purine/pyrimidine phosphoribosyltransferase;protein_id=CAC32004.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2961009	2961056	.	-	.	ID=id-ML2487;Note=PS00589 PTS HPR component serine phosphorylation site signature;gbkey=misc_feature;gene=ML2487
AL450380.1	EMBL	sequence_feature	2961024	2961446	.	-	.	ID=id-ML2487-2;Note=Pfam match to entry PF00156 Pribosyltran%2C Phosphoribosyl transferase domain%2C score 75.30%2C E-value 1.3e-18;gbkey=misc_feature;gene=ML2487
AL450380.1	EMBL	pseudogene	2961947	2962144	.	-	.	ID=gene-ML2488;Name=ML2488;gbkey=Gene;gene=ML2488;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2961947	2962144	.	-	0	ID=cds-ML2488;Parent=gene-ML2488;Note=Possible pseudogene of M. tuberculosis orthologue RvRV1544;gbkey=CDS;gene=ML2488;product=putative ketoacyl reductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2962275	2963135	.	-	.	ID=gene-ML2489;Name=ML2489;gbkey=Gene;gene=ML2489;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2962275	2963135	.	-	0	ID=cds-CAC32006.1;Parent=gene-ML2489;Dbxref=UniProtKB/TrEMBL:Q9CB27,NCBI_GP:CAC32006.1;Name=CAC32006.1;Note=Similar to Mycobacterium tuberculosis hypothetical 31.8 kda protein rv0383c or mtv036.18c TR:O53718 (EMBL:AL021931) fasta scores: E(): 0%2C 82.2%25 id in 286 aa. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=ML2489;product=possible secreted protein;protein_id=CAC32006.1;transl_table=11
AL450380.1	EMBL	gene	2963220	2965766	.	-	.	ID=gene-clpB;Name=clpB;gbkey=Gene;gene=clpB;gene_biotype=protein_coding;gene_synonym=ML2490
AL450380.1	EMBL	CDS	2963220	2965766	.	-	0	ID=cds-CAC32007.1;Parent=gene-clpB;Dbxref=GOA:Q9CB26,InterPro:IPR001270,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR004176,InterPro:IPR017730,InterPro:IPR018368,InterPro:IPR019489,InterPro:IPR023150,InterPro:IPR027417,InterPro:IPR028299,NCBI_GP:CAC32007.1;Name=CAC32007.1;Note=Similar to Mycobacterium tuberculosis ClpB protein Rv0384c SW:CLPB_MYCTU (O53719) fasta scores: E(): 0%2C 89.0%25 id in 848 aa%2C and to Escherichia coli protein ClpB TR:BAA16476 (EMBL:D90887) fasta scores: E(): 0%2C 54.8%25 id in 847 aa. Contains Pfam match to entry PF00495 clpA_B%2C Chaperonin clpA/B. Contains 2 x PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00870 Chaperonins clpA/B signature 1. Contains PS00871 Chaperonins clpA/B signature 2.%3B~Similar to ML0235;gbkey=CDS;gene=clpB;product=heat shock protein;protein_id=CAC32007.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2963259	2964173	.	-	.	ID=id-clpB;Note=Pfam match to entry PF00495 clpA_B%2C Chaperonin clpA/B%2C score 653.80%2C E-value 9e-193;gbkey=misc_feature;gene=clpB
AL450380.1	EMBL	sequence_feature	2963814	2963870	.	-	.	ID=id-clpB-2;Note=PS00871 Chaperonins clpA/B signature 2;gbkey=misc_feature;gene=clpB
AL450380.1	EMBL	sequence_feature	2963925	2963948	.	-	.	ID=id-clpB-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=clpB
AL450380.1	EMBL	sequence_feature	2964846	2964884	.	-	.	ID=id-clpB-4;Note=PS00870 Chaperonins clpA/B signature 1;gbkey=misc_feature;gene=clpB
AL450380.1	EMBL	sequence_feature	2965128	2965151	.	-	.	ID=id-clpB-5;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=clpB
AL450380.1	EMBL	gene	2966697	2967698	.	+	.	ID=gene-ML2491;Name=ML2491;gbkey=Gene;gene=ML2491;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2966697	2967698	.	+	0	ID=cds-CAC32008.1;Parent=gene-ML2491;Dbxref=InterPro:IPR025442,UniProtKB/TrEMBL:Q9CB25,NCBI_GP:CAC32008.1;Name=CAC32008.1;Note=Similar to the C-terminus of Mycobacterium tuberculosis hypothetical protein RV1754C TR:O06790 (EMBL:Z95890) (563 aa) fasta scores: E(): 0%2C 71.1%25 id in 336 aa%2C and to Mycobacterium smegmatis hypothetical 35.9 kda protein in asd 3'region SW:YASD_MYCSM (P41402) fasta scores: E(): 0.0048%2C 25.0%25 id in 348 aa.;gbkey=CDS;gene=ML2491;product=hypothetical protein;protein_id=CAC32008.1;transl_table=11
AL450380.1	EMBL	pseudogene	2968010	2968791	.	+	.	ID=gene-ML2492;Name=ML2492;gbkey=Gene;gene=ML2492;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2968010	2968791	.	+	0	ID=cds-ML2492;Parent=gene-ML2492;Note=Possible pseudogene of M. tuberculosis orthologue Rv0385 (Best blastx score 159);gbkey=CDS;gene=ML2492;product=similar to oxidoreductases (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2969298	2969696	.	-	.	ID=gene-hspR;Name=hspR;gbkey=Gene;gene=hspR;gene_biotype=protein_coding;gene_synonym=ML2493
AL450380.1	EMBL	CDS	2969298	2969696	.	-	0	ID=cds-CAC32010.1;Parent=gene-hspR;Dbxref=GOA:Q9CB24,InterPro:IPR000551,InterPro:IPR009061,UniProtKB/TrEMBL:Q9CB24,NCBI_GP:CAC32010.1;Name=CAC32010.1;Note=Similar to Mycobacterium tuberculosis HspR OR RV0353 TR:O06302 (EMBL:Z95324) fasta scores: E(): 0%2C 80.0%25 id in 125 aa%2C and to Streptomyces albus TR:P96458 (EMBL:U43299) fasta scores: E(): 3.9e-20%2C 50.0%25 id in 152 aa. Contains Pfam match to entry PF00376 merR%2C Bacterial regulatory proteins%2C merR family.;gbkey=CDS;gene=hspR;product=heat shock regulator;protein_id=CAC32010.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2969535	2969639	.	-	.	ID=id-hspR;Note=Pfam match to entry PF00376 merR%2C Bacterial regulatory proteins%2C merR family%2C score 33.30%2C E-value 5.7e-06;gbkey=misc_feature;gene=hspR
AL450380.1	EMBL	gene	2969700	2970866	.	-	.	ID=gene-dnaJ;Name=dnaJ;gbkey=Gene;gene=dnaJ;gene_biotype=protein_coding;gene_synonym=ML2494
AL450380.1	EMBL	CDS	2969700	2970866	.	-	0	ID=cds-CAC32011.1;Parent=gene-dnaJ;Dbxref=GOA:Q02605,InterPro:IPR001305,InterPro:IPR001623,InterPro:IPR002939,InterPro:IPR008971,InterPro:IPR012724,InterPro:IPR018253,NCBI_GP:CAC32011.1;Name=CAC32011.1;Note=Similar to Mycobacterium tuberculosis DnaJ protein RV0352 SW:DNAJ_MYCTU (P07881%3B O08380) fasta scores: E(): 0%2C 91.8%25 id in 391 aa. Contains Pfam match to entry PF01556 DnaJ_C%2C DnaJ C terminal region. Contains Pfam match to entry PF00684 DnaJ_CXXCXGXG%2C DnaJ central domain (4 repeats). Contains Pfam match to entry PF00226 DnaJ%2C DnaJ domain. Contains PS00636 Nt-dnaJ domain signature. Contains PS00637 CXXCXGXG dnaJ domain signature.%3B~Similar to ML0625;gbkey=CDS;gene=dnaJ;product=Hsp70 cofactor;protein_id=CAC32011.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2969751	2970113	.	-	.	ID=id-dnaJ;Note=Pfam match to entry PF01556 DnaJ_C%2C DnaJ C terminal region%2C score 183.30%2C E-value 3.8e-51;gbkey=misc_feature;gene=dnaJ
AL450380.1	EMBL	sequence_feature	2970150	2970392	.	-	.	ID=id-dnaJ-2;Note=Pfam match to entry PF00684 DnaJ_CXXCXGXG%2C DnaJ central domain (4 repeats)%2C score 146.60%2C E-value 4.4e-40;gbkey=misc_feature;gene=dnaJ
AL450380.1	EMBL	sequence_feature	2970279	2970353	.	-	.	ID=id-dnaJ-3;Note=PS00637 CXXCXGXG dnaJ domain signature;gbkey=misc_feature;gene=dnaJ
AL450380.1	EMBL	sequence_feature	2970645	2970839	.	-	.	ID=id-dnaJ-4;Note=Pfam match to entry PF00226 DnaJ%2C DnaJ domain%2C score 113.70%2C E-value 3.6e-30;gbkey=misc_feature;gene=dnaJ
AL450380.1	EMBL	sequence_feature	2970657	2970716	.	-	.	ID=id-dnaJ-5;Note=PS00636 Nt-dnaJ domain signature;gbkey=misc_feature;gene=dnaJ
AL450380.1	EMBL	gene	2970880	2971569	.	-	.	ID=gene-grpE;Name=grpE;gbkey=Gene;gene=grpE;gene_biotype=protein_coding;gene_synonym=ML2495
AL450380.1	EMBL	CDS	2970880	2971569	.	-	0	ID=cds-CAC32012.1;Parent=gene-grpE;Dbxref=GOA:Q9CB23,InterPro:IPR000740,InterPro:IPR009012,InterPro:IPR013805,NCBI_GP:CAC32012.1;Name=CAC32012.1;Note=Similar to Mycobacterium tuberculosis GrpE protein RV0351 SW:GRPE_MYCTU (P32724%3B O08379) fasta scores: E(): 0%2C 68.6%25 id in 229 aa%2C and to Streptomyces coelicolor GrpE protein SW:GRPE_STRCO (Q05562) fasta scores: E(): 3.5e-18%2C 36.8%25 id in 212 aa. Contains Pfam match to entry PF01025 GrpE%2C GrpE. Contains PS01071 grpE protein signature.;gbkey=CDS;gene=grpE;product=Hsp70 cofactor;protein_id=CAC32012.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2971000	2971482	.	-	.	ID=id-grpE;Note=Pfam match to entry PF01025 GrpE%2C GrpE%2C score 170.40%2C E-value 3e-47;gbkey=misc_feature;gene=grpE
AL450380.1	EMBL	sequence_feature	2971006	2971140	.	-	.	ID=id-grpE-2;Note=PS01071 grpE protein signature;gbkey=misc_feature;gene=grpE
AL450380.1	EMBL	gene	2971566	2973428	.	-	.	ID=gene-dnaK;Name=dnaK;gbkey=Gene;gene=dnaK;gene_biotype=protein_coding;gene_synonym=ML2496
AL450380.1	EMBL	CDS	2971566	2973428	.	-	0	ID=cds-CAC32013.1;Parent=gene-dnaK;Dbxref=GOA:P19993,InterPro:IPR012725,InterPro:IPR013126,InterPro:IPR018181,InterPro:IPR029047,InterPro:IPR029048,NCBI_GP:CAC32013.1;Name=CAC32013.1;Note=Similar to Mycobacterium paratuberculosis dnak protein SW:DNAK_MYCPA (Q00488) fasta scores: E(): 0%2C 93.4%25 id in 622 aa%2C and to Mycobacterium tuberculosis dnak protein RV0350 SW:DNAK_MYCTU (P32723%3B O06301) fasta scores: E(): 0%2C 92.5%25 id in 624 aa. Contains Pfam match to entry PF00012 HSP70%2C Hsp70 protein. Contains PS01036 Heat shock hsp70 proteins family signature 3. Contains PS00329 Heat shock hsp70 proteins family signature 2. Contains PS00297 Heat shock hsp70 proteins family signature 1.;gbkey=CDS;gene=dnaK;product=70 kD heat shock protein (molecular chaperone);protein_id=CAC32013.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2971680	2973419	.	-	.	ID=id-dnaK;Note=Pfam match to entry PF00012 HSP70%2C Hsp70 protein%2C score 1271.40%2C E-value 0;gbkey=misc_feature;gene=dnaK
AL450380.1	EMBL	sequence_feature	2972457	2972501	.	-	.	ID=id-dnaK-2;Note=PS01036 Heat shock hsp70 proteins family signature 3;gbkey=misc_feature;gene=dnaK
AL450380.1	EMBL	sequence_feature	2972886	2972927	.	-	.	ID=id-dnaK-3;Note=PS00329 Heat shock hsp70 proteins family signature 2;gbkey=misc_feature;gene=dnaK
AL450380.1	EMBL	sequence_feature	2973387	2973410	.	-	.	ID=id-dnaK-4;Note=PS00297 Heat shock hsp70 proteins family signature 1;gbkey=misc_feature;gene=dnaK
AL450380.1	EMBL	ribosome_entry_site	2973436	2973441	.	-	.	ID=id-AL450380.1:2973436..2973441;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	2974117	2974590	.	+	.	ID=gene-ML2497;Name=ML2497;gbkey=Gene;gene=ML2497;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2974117	2974590	.	+	0	ID=cds-CAC32014.1;Parent=gene-ML2497;Dbxref=GOA:Q9CB22,InterPro:IPR015893,UniProtKB/TrEMBL:Q9CB22,NCBI_GP:CAC32014.1;Name=CAC32014.1;Note=unknown function.;gbkey=CDS;gene=ML2497;product=hypothetical protein;protein_id=CAC32014.1;transl_table=11
AL450380.1	EMBL	gene	2974620	2975279	.	+	.	ID=gene-ML2498;Name=ML2498;gbkey=Gene;gene=ML2498;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2974620	2975279	.	+	0	ID=cds-CAC32015.1;Parent=gene-ML2498;Dbxref=GOA:Q9CB21,InterPro:IPR001753,InterPro:IPR029045,UniProtKB/TrEMBL:Q9CB21,NCBI_GP:CAC32015.1;Name=CAC32015.1;Note=Similar to several proteins belonging to the enoyl-CoA hydratase/isomerase family e.g. Arabidopsis thaliana carnitine racemase homolog TR:O23300 (EMBL:Z97336) fasta scores: E(): 1.7e-17%2C 36.0%25 id in 203 aa and Escherichia coli carnitine racemase CAID SW:CAID_ECOLI (P31551%3B P75623) fasta scores: E(): 2.9e-08%2C 29.0%25 id in 214 aa. Contains Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family.;gbkey=CDS;gene=ML2498;product=possible enoyl-CoA hydratase;protein_id=CAC32015.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2974653	2975150	.	+	.	ID=id-ML2498;Note=Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family%2C score 34.60%2C E-value 7.6e-10;gbkey=misc_feature;gene=ML2498
AL450380.1	EMBL	pseudogene	2976884	2977289	.	+	.	ID=gene-ML2499;Name=ML2499;gbkey=Gene;gene=ML2499;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2976884	2977289	.	+	0	ID=cds-ML2499;Parent=gene-ML2499;Note=Possible pseudogene of M. tuberculosis orthologue Rv0374c (Best blastx score 170);gbkey=CDS;gene=ML2499;product=putative CO dehydrogenase gene cluster (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2978847	2979803	.	+	.	ID=gene-ML2500;Name=ML2500;gbkey=Gene;gene=ML2500;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2978847	2979803	.	+	0	ID=cds-ML2500;Parent=gene-ML2500;Note=Possible pseudogene of M. tuberculosis orthologue Rv2264c (Best blastx score 77);gbkey=CDS;gene=ML2500;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2980181	2982823	.	+	.	ID=gene-ML2501;Name=ML2501;gbkey=Gene;gene=ML2501;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2980181	2982823	.	+	0	ID=cds-CAC32018.1;Parent=gene-ML2501;Dbxref=GOA:Q9CB20,InterPro:IPR004017,InterPro:IPR009051,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:Q9CB20,NCBI_GP:CAC32018.1;Name=CAC32018.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV0338C TR:O33268 (EMBL:Z97991) fasta scores: E(): 0%2C 78.1%25 id in 894 aa%2C and to Streptomyces coelicolor putative iron-sulphur-binding reductase SCH35.51C TR:Q9X8V5 (EMBL:AL078610) fasta scores: E(): 0%2C 48.2%25 id in 776 aa. Contains multiple possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain. Contains PS00070 Aldehyde dehydrogenases cysteine active site. Contains 2 x PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=CDS;gene=ML2501;product=probable iron-sulphur-binding reductase;protein_id=CAC32018.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2981069	2981104	.	+	.	ID=id-ML2501;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;gene=ML2501
AL450380.1	EMBL	sequence_feature	2981354	2981422	.	+	.	ID=id-ML2501-2;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 13.70%2C E-value 0.019;gbkey=misc_feature;gene=ML2501
AL450380.1	EMBL	sequence_feature	2981372	2981407	.	+	.	ID=id-ML2501-3;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;gene=ML2501
AL450380.1	EMBL	sequence_feature	2981729	2981764	.	+	.	ID=id-ML2501-4;Note=PS00070 Aldehyde dehydrogenases cysteine active site;gbkey=misc_feature;gene=ML2501
AL450380.1	EMBL	gene	2982832	2984145	.	+	.	ID=gene-ML2502;Name=ML2502;gbkey=Gene;gene=ML2502;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2982832	2984145	.	+	0	ID=cds-CAC32019.1;Parent=gene-ML2502;Dbxref=GOA:Q9CB19,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q9CB19,NCBI_GP:CAC32019.1;Name=CAC32019.1;Note=Similar to Mycobacterium tuberculosis probable aspartate aminotransferase RV0337C SW:AAT_MYCTU (O33267) fasta scores: E(): 0%2C 91.4%25 id in 429 aa and to Bacillus stearothermophilus aspartate aminotransferase AspC SW:AAT_BACST (Q59228) fasta scores: E(): 0%2C 32.4%25 id in 389 aa. Contains Pfam match to entry PF00155 aminotran_1%2C Aminotransferases class-I.;gbkey=CDS;gene=ML2502;product=probable aspartate aminotransferase;protein_id=CAC32019.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2982946	2984133	.	+	.	ID=id-ML2502;Note=Pfam match to entry PF00155 aminotran_1%2C Aminotransferases class-I%2C score 96.10%2C E-value 7e-25;gbkey=misc_feature;gene=ML2502
AL450380.1	EMBL	gene	2984300	2985166	.	-	.	ID=gene-rfbA;Name=rfbA;gbkey=Gene;gene=rfbA;gene_biotype=protein_coding;gene_synonym=ML2503
AL450380.1	EMBL	CDS	2984300	2985166	.	-	0	ID=cds-CAC32020.1;Parent=gene-rfbA;Dbxref=GOA:Q9CB18,InterPro:IPR005835,InterPro:IPR005907,InterPro:IPR029044,UniProtKB/TrEMBL:Q9CB18,NCBI_GP:CAC32020.1;Name=CAC32020.1;Note=Similar to Mycobacterium tuberculosis glucose-1-phosphate thymidylyltransferase RV0334 TR:P72017 (EMBL:U55242) fasta scores: E(): 0%2C 86.9%25 id in 282 aa%2C and to Escherichia coli glucose-1-phosphate thymidylyltransferase RfbA SW:RBA2_ECOLI (P55253) fasta scores: E(): 0%2C 61.1%25 id in 283 aa. Contains Pfam match to entry PF00483 NTP_transferase%2C Nucleotidyl transferase.;gbkey=CDS;gene=rfbA;product=glucose-1-phosphate thymidyltransferase;protein_id=CAC32020.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2984450	2985151	.	-	.	ID=id-rfbA;Note=Pfam match to entry PF00483 NTP_transferase%2C Nucleotidyl transferase%2C score 323.90%2C E-value 1.9e-93;gbkey=misc_feature;gene=rfbA
AL450380.1	EMBL	pseudogene	2985199	2985576	.	-	.	ID=gene-ML2504;Name=ML2504;gbkey=Gene;gene=ML2504;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2985199	2985576	.	-	0	ID=cds-ML2504;Parent=gene-ML2504;Note=Possible pseudogene of M. tuberculosis orthologue Rv0333 (Best blastx score 146);gbkey=CDS;gene=ML2504;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2985834	2985959	.	-	.	ID=gene-ML2505;Name=ML2505;gbkey=Gene;gene=ML2505;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2985834	2985959	.	-	0	ID=cds-ML2505;Parent=gene-ML2505;Note=Possible pseudogene of M. tuberculosis orthologue Rv0332 (Best blastx score 98);gbkey=CDS;gene=ML2505;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2986693	2987410	.	-	.	ID=gene-udgA;Name=udgA;gbkey=Gene;gene=udgA;gene_biotype=pseudogene;gene_synonym=ML2506;pseudo=true
AL450380.1	EMBL	CDS	2986693	2987410	.	-	0	ID=cds-udgA;Parent=gene-udgA;Note=Possible pseudogene of M. tuberculosis orthologue udgA (Best blastx score 398);gbkey=CDS;gene=udgA;product=UDP-glucose dehydrogenase/GDP-mannose (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2987949	2988521	.	-	.	ID=gene-ML2507;Name=ML2507;gbkey=Gene;gene=ML2507;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2987949	2988521	.	-	0	ID=cds-CAC32024.1;Parent=gene-ML2507;Dbxref=GOA:Q9CB17,InterPro:IPR008180,InterPro:IPR011962,InterPro:IPR029054,NCBI_GP:CAC32024.1;Name=CAC32024.1;Note=Similar to Mycobacterium tuberculosis deoxycytidine triphosphate deaminase RV0321 SW:DCD_MYCTU (O07247) fasta scores: E(): 0%2C 89.5%25 id in 190 aa and to Escherichia coli deoxycytidine triphosphate deaminase SW:DCD_ECOLI (P28248) fasta scores: E(): 7.5e-20%2C 42.6%25 id in 188 aa. Contains Pfam match to entry PF00692 dUTPase%2C dUTPase. Contains PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=CDS;gene=ML2507;product=probable deoxycytidine triphosphate deaminase;protein_id=CAC32024.1;transl_table=11
AL450380.1	EMBL	sequence_feature	2987979	2988377	.	-	.	ID=id-ML2507;Note=Pfam match to entry PF00692 dUTPase%2C dUTPase%2C score 65.70%2C E-value 9.9e-16;gbkey=misc_feature;gene=ML2507
AL450380.1	EMBL	sequence_feature	2988216	2988239	.	-	.	ID=id-ML2507-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML2507
AL450380.1	EMBL	pseudogene	2988593	2988970	.	-	.	ID=gene-ML2508;Name=ML2508;gbkey=Gene;gene=ML2508;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2988593	2988970	.	-	0	ID=cds-ML2508;Parent=gene-ML2508;Note=Possible pseudogene of M. tuberculosis orthologue Rv0320 (Best blastx score 205);gbkey=CDS;gene=ML2508;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2989356	2989429	.	+	.	ID=gene-glyU;Name=glyU;gbkey=Gene;gene=glyU;gene_biotype=tRNA
AL450380.1	EMBL	tRNA	2989356	2989429	.	+	.	ID=rna-glyU;Parent=gene-glyU;Note=tRNA Gly anticodon CCC%2C Cove score 81.00;gbkey=tRNA;gene=glyU;product=tRNA-Gly
AL450380.1	EMBL	exon	2989356	2989429	.	+	.	ID=exon-glyU-1;Parent=rna-glyU;Note=tRNA Gly anticodon CCC%2C Cove score 81.00;gbkey=tRNA;gene=glyU;product=tRNA-Gly
AL450380.1	EMBL	pseudogene	2990507	2991095	.	+	.	ID=gene-ML2509;Name=ML2509;gbkey=Gene;gene=ML2509;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2990507	2991095	.	+	0	ID=cds-ML2509;Parent=gene-ML2509;Note=Possible pseudogene of M. tuberculosis orthologue Rv2826c (Best blastx score 189);gbkey=CDS;gene=ML2509;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	2991417	2991670	.	-	.	ID=id-AL450380.1:2991417..2991670;Note=Dispersed repeat%3B similar but not identical to region near 5'-end of LEPREP%3B 92%25 identity in 179 bp stretch;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	2991585	2992004	.	+	.	ID=gene-ML2510;Name=ML2510;gbkey=Gene;gene=ML2510;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2991585	2992004	.	+	0	ID=cds-ML2510;Parent=gene-ML2510;Note=Possible pseudogene of M. tuberculosis orthologue echA5 (Best blastx score 100);gbkey=CDS;gene=ML2510;product=enoyl-CoA hydratase/isomerase superfamily (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2992629	2993260	.	+	.	ID=gene-ML2511;Name=ML2511;gbkey=Gene;gene=ML2511;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2992629	2993260	.	+	0	ID=cds-ML2511;Parent=gene-ML2511;Note=Possible pseudogene of M. tuberculosis orthologue sugI (Best blastx score 95);gbkey=CDS;gene=ML2511;product=probable sugar transport protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2993279	2993606	.	+	.	ID=gene-ML2512;Name=ML2512;gbkey=Gene;gene=ML2512;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2993279	2993606	.	+	0	ID=cds-ML2512;Parent=gene-ML2512;Note=Possible pseudogene of M. tuberculosis orthologue Rv3903c (Best blastx score 61);gbkey=CDS;gene=ML2512;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2993612	2994251	.	-	.	ID=gene-mpt64;Name=mpt64;gbkey=Gene;gene=mpt64;gene_biotype=pseudogene;gene_synonym=ML2513;pseudo=true
AL450380.1	EMBL	CDS	2993612	2994251	.	-	0	ID=cds-mpt64;Parent=gene-mpt64;Note=Possible pseudogene of M. tuberculosis orthologue mpt64 (Best blastx score 136);gbkey=CDS;gene=mpt64;product=secreted immunogenic protein Mpb64/Mpt64 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2994494	2995061	.	-	.	ID=gene-ML2514;Name=ML2514;gbkey=Gene;gene=ML2514;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2994494	2995061	.	-	0	ID=cds-ML2514;Parent=gene-ML2514;Note=Possible pseudogene of M. tuberculosis orthologue Rv3481c (Best blastx score 152);gbkey=CDS;gene=ML2514;product=possible membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2995543	2996841	.	+	.	ID=gene-ML2515;Name=ML2515;gbkey=Gene;gene=ML2515;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2995543	2996841	.	+	0	ID=cds-ML2515;Parent=gene-ML2515;Note=Possible pseudogene of M. tuberculosis orthologue Rv1635c (Best blastx score 264);gbkey=CDS;gene=ML2515;product=unknown membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2997196	2998915	.	-	.	ID=gene-ML2516;Name=ML2516;gbkey=Gene;gene=ML2516;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2997196	2998915	.	-	0	ID=cds-ML2516;Parent=gene-ML2516;Note=Possible pseudogene of M. tuberculosis orthologue Rv0315 (Best blastx score 440);gbkey=CDS;gene=ML2516;product=probable [beta]-1%2C3-glucanase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	2999102	2999803	.	+	.	ID=gene-ML2517;Name=ML2517;gbkey=Gene;gene=ML2517;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	2999102	2999803	.	+	0	ID=cds-ML2517;Parent=gene-ML2517;Note=Possible pseudogene of M. tuberculosis orthologue Rv0314c (Best blastx score 174);gbkey=CDS;gene=ML2517;product=unknown hydrophobic protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	2999816	3000208	.	-	.	ID=gene-ML2518;Name=ML2518;gbkey=Gene;gene=ML2518;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	2999816	3000208	.	-	0	ID=cds-CAC32049.1;Parent=gene-ML2518;Dbxref=UniProtKB/TrEMBL:Q9CD39,NCBI_GP:CAC32049.1;Name=CAC32049.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV0313 TR:O07240 (EMBL:Z96800) fasta scores: E(): 0%2C 77.3%25 id in 128 aa.;gbkey=CDS;gene=ML2518;product=conserved hypothetical protein;protein_id=CAC32049.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	3000212	3000217	.	-	.	ID=id-AL450380.1:3000212..3000217;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	3001804	3002621	.	-	.	ID=gene-ML2519;Name=ML2519;gbkey=Gene;gene=ML2519;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3001804	3002621	.	-	0	ID=cds-ML2519;Parent=gene-ML2519;Note=Possible pseudogene of M. tuberculosis orthologue Rv0312 (Best blastx score 183);gbkey=CDS;gene=ML2519;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3002816	3004011	.	-	.	ID=gene-ML2520;Name=ML2520;gbkey=Gene;gene=ML2520;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3002816	3004011	.	-	0	ID=cds-ML2520;Parent=gene-ML2520;Note=Possible pseudogene of M. tuberculosis orthologue Rv0311 (Best blastx score 556);gbkey=CDS;gene=ML2520;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3004079	3004462	.	+	.	ID=gene-ML2521;Name=ML2521;gbkey=Gene;gene=ML2521;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3004079	3004462	.	+	0	ID=cds-ML2521;Parent=gene-ML2521;Note=Possible pseudogene of M. tuberculosis orthologue Rv0310c (Best blastx score 193);gbkey=CDS;gene=ML2521;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3004590	3005246	.	-	.	ID=gene-ML2522;Name=ML2522;gbkey=Gene;gene=ML2522;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3004590	3005246	.	-	0	ID=cds-CAC32053.1;Parent=gene-ML2522;Dbxref=UniProtKB/TrEMBL:Q9CD38,NCBI_GP:CAC32053.1;Name=CAC32053.1;Note=Similar to Mycobacterium tuberculosis hypothetical 22.5 kda protein RV0309 TR:O07236 (EMBL:Z96800) fasta scores: E(): 0%2C 78.0%25 id in 218 aa%2C and to Streptomyces coelicolor putative secreted protein SCL24.08 TR:CAB76092 (EMBL:AL157956) fasta scores: E(): 2.8e-13%2C 32.4%25 id in 207 aa. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=ML2522;product=putative secreted protein;protein_id=CAC32053.1;transl_table=11
AL450380.1	EMBL	pseudogene	3005479	3005896	.	-	.	ID=gene-ML2523;Name=ML2523;gbkey=Gene;gene=ML2523;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3005479	3005896	.	-	0	ID=cds-ML2523;Parent=gene-ML2523;Note=Possible pseudogene of M. tuberculosis orthologue Rv0308 (Best blastx score 131);gbkey=CDS;gene=ML2523;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3006106	3006413	.	+	.	ID=gene-ML2524;Name=ML2524;gbkey=Gene;gene=ML2524;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3006106	3006413	.	+	0	ID=cds-ML2524;Parent=gene-ML2524;Note=Possible pseudogene of M. tuberculosis orthologue Rv0307c (Best blastx score 101);gbkey=CDS;gene=ML2524;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3007971	3008960	.	+	.	ID=gene-atsG;Name=atsG;gbkey=Gene;gene=atsG;gene_biotype=pseudogene;gene_synonym=ML2525;pseudo=true
AL450380.1	EMBL	CDS	3007971	3008960	.	+	0	ID=cds-atsG;Parent=gene-atsG;Note=Possible pseudogene of M. tuberculosis orthologue atsG (Best blastx score 183);gbkey=CDS;gene=atsG;product=proable arylsulfatase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3009065	3009151	.	+	.	ID=gene-ML2526;Name=ML2526;gbkey=Gene;gene=ML2526;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3009065	3009151	.	+	0	ID=cds-ML2526;Parent=gene-ML2526;Note=Possible pseudogene of M. tuberculosis orthologue Rv0295c;gbkey=CDS;gene=ML2526;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3009256	3010275	.	-	.	ID=gene-ML2527;Name=ML2527;gbkey=Gene;gene=ML2527;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3009256	3010275	.	-	0	ID=cds-CAC32058.1;Parent=gene-ML2527;Dbxref=InterPro:IPR021368,UniProtKB/TrEMBL:Q9CD37,NCBI_GP:CAC32058.1;Name=CAC32058.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV0292 TR:O53696 (EMBL:AL021930) fasta scores: E(): 0%2C 61.6%25 id in 333 aa. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2527;product=conserved membrane protein;protein_id=CAC32058.1;transl_table=11
AL450380.1	EMBL	gene	3010272	3011699	.	-	.	ID=gene-ML2528;Name=ML2528;gbkey=Gene;gene=ML2528;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3010272	3011699	.	-	0	ID=cds-CAC32059.1;Parent=gene-ML2528;Dbxref=GOA:Q9CD36,InterPro:IPR000209,InterPro:IPR015500,InterPro:IPR022398,InterPro:IPR023834,UniProtKB/TrEMBL:Q9CD36,NCBI_GP:CAC32059.1;Name=CAC32059.1;Note=Similar to many proposed proteases e.g. Mycobacterium tuberculosis putative protease RV0291 TR:O53695 (EMBL:AL021930) fasta scores: E(): 0%2C 69.9%25 id in 468 aa. Contains 2 Pfam matches to entry PF00082 Peptidase_S8%2C Subtilase family. Contains PS00137 Serine proteases.%3B~Similar to ML0041 and ML1538;gbkey=CDS;gene=ML2528;product=putative protease;protein_id=CAC32059.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3010467	3010823	.	-	.	ID=id-ML2528;Note=Pfam match to entry PF00082 Peptidase_S8%2C Subtilase family%2C score 40.80%2C E-value 2.4e-10;gbkey=misc_feature;gene=ML2528
AL450380.1	EMBL	sequence_feature	3011196	3011462	.	-	.	ID=id-ML2528-2;Note=Pfam match to entry PF00082 Peptidase_S8%2C Subtilase family%2C score 28.30%2C E-value 7.1e-07;gbkey=misc_feature;gene=ML2528
AL450380.1	EMBL	sequence_feature	3011268	3011300	.	-	.	ID=id-ML2528-3;Note=PS00137 Serine proteases;gbkey=misc_feature;gene=ML2528
AL450380.1	EMBL	gene	3011710	3013167	.	-	.	ID=gene-ML2529;Name=ML2529;gbkey=Gene;gene=ML2529;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3011710	3013167	.	-	0	ID=cds-CAC32060.1;Parent=gene-ML2529;Dbxref=InterPro:IPR006707,InterPro:IPR024962,UniProtKB/TrEMBL:Q9CD35,NCBI_GP:CAC32060.1;Name=CAC32060.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV0290 TR:O86362 (EMBL:AL021930) fasta scores: E(): 0%2C 76.4%25 id in 471 aa%2C and to Streptomyces coelicolor putative integral membrane protein SC3C3.21 TR:O86654 (EMBL:AL031231) fasta scores: E(): 1.9e-05%2C 23.8%25 id in 483 aa. Contains multiple possible membrane spanning hydrophobic domains towards the C-terminus.;gbkey=CDS;gene=ML2529;product=conserved membrane protein;protein_id=CAC32060.1;transl_table=11
AL450380.1	EMBL	gene	3013309	3014178	.	-	.	ID=gene-ML2530;Name=ML2530;gbkey=Gene;gene=ML2530;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3013309	3014178	.	-	0	ID=cds-CAC32061.1;Parent=gene-ML2530;Dbxref=GOA:Q9CD34,InterPro:IPR025734,UniProtKB/TrEMBL:Q9CD34,NCBI_GP:CAC32061.1;Name=CAC32061.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV0289 TR:O53694 (EMBL:AL021930) fasta scores: E(): 0%2C 75.9%25 id in 295 aa. Contains a probable helix-turn-helix motif at aa 175-196 (Score 1281%2C SD +3.55);gbkey=CDS;gene=ML2530;product=possible DNA-binding protein;protein_id=CAC32061.1;transl_table=11
AL450380.1	EMBL	gene	3014189	3014479	.	-	.	ID=gene-ML2531;Name=ML2531;gbkey=Gene;gene=ML2531;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3014189	3014479	.	-	0	ID=cds-CAC32062.1;Parent=gene-ML2531;Dbxref=InterPro:IPR010310,NCBI_GP:CAC32062.1;Name=CAC32062.1;Note=Similar to Mycobacterium tuberculosis 10 kda antigenic protein RV0288 SW:CFP7_MYCTU (O53693) fasta scores: E(): 6.1e-29%2C 70.5%25 id in 95 aa.;gbkey=CDS;gene=ML2531;product=possible cell surface protein;protein_id=CAC32062.1;transl_table=11
AL450380.1	EMBL	gene	3014518	3014814	.	-	.	ID=gene-ML2532;Name=ML2532;gbkey=Gene;gene=ML2532;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3014518	3014814	.	-	0	ID=cds-CAC32063.1;Parent=gene-ML2532;Dbxref=InterPro:IPR010310,UniProtKB/TrEMBL:Q9CD32,NCBI_GP:CAC32063.1;Name=CAC32063.1;Note=Similar to Mycobacterium tuberculosis PE-family protein RV3020C TR:O53267 (EMBL:AL021287) fasta scores: E(): 5.5e-26%2C 73.7%25 id in 95 aa.;gbkey=CDS;gene=ML2532;product=PE-family protein;protein_id=CAC32063.1;transl_table=11
AL450380.1	EMBL	pseudogene	3015183	3016100	.	-	.	ID=gene-PE-7;Name=PE;gbkey=Gene;gene=PE;gene_biotype=pseudogene;gene_synonym=ML2533;pseudo=true
AL450380.1	EMBL	CDS	3015183	3016100	.	-	0	ID=cds-PE-6;Parent=gene-PE-7;Note=Possible pseudogene of M. tuberculosis orthologue PE (Best blastx score 361);gbkey=CDS;gene=PE;product=PE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3016103	3016411	.	-	.	ID=gene-ML2534;Name=ML2534;gbkey=Gene;gene=ML2534;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3016103	3016411	.	-	0	ID=cds-CAC32065.1;Parent=gene-ML2534;Dbxref=InterPro:IPR000084,UniProtKB/TrEMBL:Q9CD31,NCBI_GP:CAC32065.1;Name=CAC32065.1;Note=Similar to Mycobacterium tuberculosis PE-family protein RV0285 OR MTV035.13 TR:O53690 (EMBL:AL021930) fasta scores: E(): 2.1e-23%2C 73.0%25 id in 100 aa.;gbkey=CDS;gene=ML2534;product=PE-family protein;protein_id=CAC32065.1;transl_table=11
AL450380.1	EMBL	gene	3016446	3020435	.	-	.	ID=gene-ML2535;Name=ML2535;gbkey=Gene;gene=ML2535;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3016446	3020435	.	-	0	ID=cds-CAC32066.1;Parent=gene-ML2535;Dbxref=GOA:Q9CD30,InterPro:IPR002543,InterPro:IPR003593,InterPro:IPR023836,InterPro:IPR023837,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CD30,NCBI_GP:CAC32066.1;Name=CAC32066.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV0284 TR:O53689 (EMBL:AL021930) fasta scores: E(): 0%2C 84.2%25 id in 1318 aa and to Streptomyces coelicolor ATP/GTP binding protein SC3C3.20C TR:O86653 (EMBL:AL031231) fasta scores: E(): 0%2C 36.0%25 id in 1379 aa. Also similar in regions to several cell division proteins e.g. Coxiella burnetii cell division protein%2C FtsK homologue%2C SW:FTSK_COXBU (P39920) E(): 4.2e-07 28.3%25 id in 304. Contains a possible membrane spanning hydrophobic domain. Contains 2 Pfam matches to entry PF01580 FtsK_SpoIIIE%2C FtsK/SpoIIIE family. Contains 3 x PS00017 ATP/GTP-binding site motif A (P-loop).%3B~Similar to ML0053;gbkey=CDS;gene=ML2535;product=conserved hypothetical protein;protein_id=CAC32066.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3017091	3017114	.	-	.	ID=id-ML2535;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML2535
AL450380.1	EMBL	sequence_feature	3017274	3018071	.	-	.	ID=id-ML2535-2;Note=Pfam match to entry PF01580 FtsK_SpoIIIE%2C FtsK/SpoIIIE family%2C score 277.50%2C E-value 1.8e-79;gbkey=misc_feature;gene=ML2535
AL450380.1	EMBL	sequence_feature	3017913	3017936	.	-	.	ID=id-ML2535-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML2535
AL450380.1	EMBL	sequence_feature	3018510	3019139	.	-	.	ID=id-ML2535-4;Note=Pfam match to entry PF01580 FtsK_SpoIIIE%2C FtsK/SpoIIIE family%2C score 88.50%2C E-value 1.3e-22;gbkey=misc_feature;gene=ML2535
AL450380.1	EMBL	sequence_feature	3018966	3018989	.	-	.	ID=id-ML2535-5;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML2535
AL450380.1	EMBL	gene	3020432	3022090	.	-	.	ID=gene-ML2536;Name=ML2536;gbkey=Gene;gene=ML2536;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3020432	3022090	.	-	0	ID=cds-CAC32067.1;Parent=gene-ML2536;Dbxref=InterPro:IPR007795,UniProtKB/TrEMBL:Q9CD29,NCBI_GP:CAC32067.1;Name=CAC32067.1;Note=Similar to several Mycobacterium tuberculosis hypothetical proteins e.g. RV0283 TR:O53688 (EMBL:AL021930) fasta scores: E(): 0%2C 70.8%25 id in 552 aa. Contains a possible membrane spanning hydrophobic domain.%3B~Similar to ML1544;gbkey=CDS;gene=ML2536;product=conserved membrane protein;protein_id=CAC32067.1;transl_table=11
AL450380.1	EMBL	gene	3022083	3024005	.	-	.	ID=gene-ML2537;Name=ML2537;gbkey=Gene;gene=ML2537;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3022083	3024005	.	-	0	ID=cds-CAC32068.1;Parent=gene-ML2537;Dbxref=GOA:Q9CD28,InterPro:IPR000641,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR023835,InterPro:IPR027417,NCBI_GP:CAC32068.1;Name=CAC32068.1;Note=Similar to many Mycobacterium tuberculosis hypothetical proteins e.g. RV0282 SW:Y282_MYCTU (O53687) fasta scores: E(): 0%2C 83.6%25 id in 628 aa. The C-terminus is also similar to many CBXX/CFQX family proteins e.g. Alcaligenes eutrophus SW:CBXP_ALCEU (Q04540) fasta scores: E(): 3.8e-24%2C 36.4%25 id in 283 aa. Contains Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA). Contains PS00017 ATP/GTP-binding site motif A (P-loop).%3B~Similar to ML0055 and ML1536;gbkey=CDS;gene=ML2537;product=conserved hypothetical protein;protein_id=CAC32068.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3022269	3022844	.	-	.	ID=id-ML2537;Note=Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%2C score -11.50%2C E-value 0.00021;gbkey=misc_feature;gene=ML2537
AL450380.1	EMBL	sequence_feature	3022806	3022829	.	-	.	ID=id-ML2537-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ML2537
AL450380.1	EMBL	pseudogene	3024990	3025445	.	-	.	ID=gene-PPE-13;Name=PPE;gbkey=Gene;gene=PPE;gene_biotype=pseudogene;gene_synonym=ML2538;pseudo=true
AL450380.1	EMBL	CDS	3024990	3025445	.	-	0	ID=cds-PPE-10;Parent=gene-PPE-13;Note=Possible pseudogene of M. tuberculosis orthologue PPE (Best blastx score 562);gbkey=CDS;gene=PPE;product=PPE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3025564	3026068	.	-	.	ID=gene-ML2539;Name=ML2539;gbkey=Gene;gene=ML2539;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3025564	3026068	.	-	0	ID=cds-ML2539;Parent=gene-ML2539;Note=Possible pseudogene of M. tuberculosis orthologue Rv0893c (Best blastx score 180);gbkey=CDS;gene=ML2539;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3026808	3027663	.	-	.	ID=gene-ML2540;Name=ML2540;gbkey=Gene;gene=ML2540;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3026808	3027663	.	-	0	ID=cds-ML2540;Parent=gene-ML2540;Note=Possible pseudogene of M. tuberculosis orthologue Rv0276 (Best blastx score 333);gbkey=CDS;gene=ML2540;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3027834	3028272	.	+	.	ID=gene-fadD27;Name=fadD27;gbkey=Gene;gene=fadD27;gene_biotype=pseudogene;gene_synonym=ML2541;pseudo=true
AL450380.1	EMBL	CDS	3027834	3028272	.	+	0	ID=cds-fadD27;Parent=gene-fadD27;Note=Possible pseudogene of M. tuberculosis orthologue fadD27 (Best blastx score 133);gbkey=CDS;gene=fadD27;product=acyl-CoA synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3028979	3029473	.	-	.	ID=gene-ML2542;Name=ML2542;gbkey=Gene;gene=ML2542;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3028979	3029473	.	-	0	ID=cds-ML2542;Parent=gene-ML2542;Note=Possible pseudogene of M. tuberculosis orthologue Rv0274 (Best blastx score 124);gbkey=CDS;gene=ML2542;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3029658	3030210	.	+	.	ID=gene-ML2543;Name=ML2543;gbkey=Gene;gene=ML2543;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3029658	3030210	.	+	0	ID=cds-ML2543;Parent=gene-ML2543;Note=Possible pseudogene of M. tuberculosis orthologue Rv0273c (Best blastx score 132);gbkey=CDS;gene=ML2543;product=putative transcriptional regulator (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3030286	3031388	.	+	.	ID=gene-ML2544;Name=ML2544;gbkey=Gene;gene=ML2544;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3030286	3031388	.	+	0	ID=cds-ML2544;Parent=gene-ML2544;Note=Possible pseudogene of M. tuberculosis orthologue Rv0272c (Best blastx score 474);gbkey=CDS;gene=ML2544;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3031508	3032308	.	+	.	ID=gene-fadE6;Name=fadE6;gbkey=Gene;gene=fadE6;gene_biotype=pseudogene;gene_synonym=ML2545;pseudo=true
AL450380.1	EMBL	CDS	3031508	3032308	.	+	0	ID=cds-fadE6;Parent=gene-fadE6;Note=Possible pseudogene of M. tuberculosis orthologue fadE6 (Best blastx score 187);gbkey=CDS;gene=fadE6;product=acyl-CoA dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3033660	3035306	.	-	.	ID=gene-fadD2;Name=fadD2;gbkey=Gene;gene=fadD2;gene_biotype=protein_coding;gene_synonym=ML2546
AL450380.1	EMBL	CDS	3033660	3035306	.	-	0	ID=cds-CAC32077.1;Parent=gene-fadD2;Dbxref=GOA:Q9CD27,InterPro:IPR000873,InterPro:IPR020845,InterPro:IPR025110,UniProtKB/TrEMBL:Q9CD27,NCBI_GP:CAC32077.1;Name=CAC32077.1;Note=Similar to Rhizobium trifolii malonyl CoA synthetase MATB TR:Q9ZIP5 (EMBL:AF117694) fasta scores: E(): 2.4e-31%2C 31.2%25 id in 507 aa and Mycobacterium tuberculosis hypothetical 59.9 kda protein RV0270 TR:P95227 (EMBL:Z86089) fasta scores: E(): 0%2C 82.3%25 id in 558 aa. Contains Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme. Contains PS00455 Putative AMP-binding domain signature.;gbkey=CDS;gene=fadD2;product=acyl-CoA synthase;protein_id=CAC32077.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3033876	3035090	.	-	.	ID=id-fadD2;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score 19.00%2C E-value 1.8e-16;gbkey=misc_feature;gene=fadD2
AL450380.1	EMBL	sequence_feature	3034647	3034682	.	-	.	ID=id-fadD2-2;Note=PS00455 Putative AMP-binding domain signature;gbkey=misc_feature;gene=fadD2
AL450380.1	EMBL	pseudogene	3035409	3036256	.	+	.	ID=gene-ML2547;Name=ML2547;gbkey=Gene;gene=ML2547;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3035409	3036256	.	+	0	ID=cds-ML2547;Parent=gene-ML2547;Note=Possible pseudogene of M. tuberculosis orthologue Rv0269c (Best blastx score 255);gbkey=CDS;gene=ML2547;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3036706	3037422	.	+	.	ID=gene-fecB2;Name=fecB2;gbkey=Gene;gene=fecB2;gene_biotype=pseudogene;gene_synonym=ML2548;pseudo=true
AL450380.1	EMBL	CDS	3036706	3037422	.	+	0	ID=cds-fecB2;Parent=gene-fecB2;Note=Possible pseudogene of M. tuberculosis orthologue fecB2 (Best blastx score 370);gbkey=CDS;gene=fecB2;product=iron transport protein FeIII dicitrate transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3037538	3038206	.	+	.	ID=gene-ML2549;Name=ML2549;gbkey=Gene;gene=ML2549;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3037538	3038206	.	+	0	ID=cds-CAC32080.1;Parent=gene-ML2549;Dbxref=InterPro:IPR003833,InterPro:IPR024946,InterPro:IPR029000,UniProtKB/TrEMBL:Q9CD26,NCBI_GP:CAC32080.1;Name=CAC32080.1;Note=Similar to several proteins of undefined function including: Mycobacterium tuberculosis hypothetical protein RV0264C TR:P95221 (EMBL:Z86089) fasta scores: E(): 0%2C 75.2%25 id in 202 aa%2C and to Escherichia coli hypothetical protein SW:YBGJ_ECOLI (P75744) fasta scores: E(): 9.5e-20%2C 40.1%25 id in 182 aa.;gbkey=CDS;gene=ML2549;product=conserved hypothetical protein;protein_id=CAC32080.1;transl_table=11
AL450380.1	EMBL	gene	3038228	3039145	.	+	.	ID=gene-ML2550;Name=ML2550;gbkey=Gene;gene=ML2550;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3038228	3039145	.	+	0	ID=cds-CAC32081.1;Parent=gene-ML2550;Dbxref=InterPro:IPR003778,InterPro:IPR029000,UniProtKB/TrEMBL:Q9CD25,NCBI_GP:CAC32081.1;Name=CAC32081.1;Note=Similar to many proteins of undefined function including: Mycobacterium tuberculosis hypothetical 32.2 kDa protein RV0263C TR:P95220 (EMBL:Z86089) fasta scores: E(): 0%2C 78.3%25 id in 286 aa%2C and to Escherichia coli hypothetical 34.4 kDa protein in SW:YBGK_ECOLI (P75745) fasta scores: E(): 2.6e-26%2C 35.5%25 id in 304 aa.;gbkey=CDS;gene=ML2550;product=conserved hypothetical protein;protein_id=CAC32081.1;transl_table=11
AL450380.1	EMBL	gene	3039192	3039740	.	+	.	ID=gene-aac;Name=aac;gbkey=Gene;gene=aac;gene_biotype=protein_coding;gene_synonym=ML2551
AL450380.1	EMBL	CDS	3039192	3039740	.	+	0	ID=cds-CAC32082.1;Parent=gene-aac;Dbxref=GOA:Q9CD24,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:Q9CD24,NCBI_GP:CAC32082.1;Name=CAC32082.1;Note=Highly similar to several mycobacterial aminoglycoside-resistance determinants e.g. Mycobacterium tuberculosis aminoglycoside 2'-n-acetyltransferase Aac OR RV0262C SW:AAC2_MYCTU (P95219%3B P72033) fasta scores: E(): 0%2C 78.7%25 id in 178 aa.;gbkey=CDS;gene=aac;product=aminoglycoside 2'-N-acetyltransferase;protein_id=CAC32082.1;transl_table=11
AL450380.1	EMBL	pseudogene	3040711	3044914	.	+	.	ID=gene-narK3;Name=narK3;gbkey=Gene;gene=narK3;gene_biotype=pseudogene;gene_synonym=ML2552;pseudo=true
AL450380.1	EMBL	CDS	3040711	3044914	.	+	0	ID=cds-narK3;Parent=gene-narK3;Note=Possible pseudogene of M. tuberculosis orthologue narK3 (Best blastx score 288). This pseudo gene appears to bound a perfectly duplicated portion of sequence;gbkey=CDS;gene=narK3;product=nitrite extrusion protein1 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	3042159	3043487	.	+	.	ID=id-narK3;Note=1329 bp repeat. Shares 100 %25 sequence identity with bases 49168..50496;gbkey=repeat_region;gene=narK3;pseudo=true
AL450380.1	EMBL	repeat_region	3044255	3044994	.	+	.	ID=id-AL450380.1:3044255..3044994;Note=740 bp repeat. 100%25 identical to complement(980403..981142);gbkey=repeat_region
AL450380.1	EMBL	pseudogene	3045291	3045703	.	+	.	ID=gene-ML2553;Name=ML2553;gbkey=Gene;gene=ML2553;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3045291	3045703	.	+	0	ID=cds-ML2553;Parent=gene-ML2553;Note=Possible pseudogene of M. tuberculosis orthologue Rv0258c (Best blastx score 273);gbkey=CDS;gene=ML2553;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3045791	3046073	.	-	.	ID=gene-nirD;Name=nirD;gbkey=Gene;gene=nirD;gene_biotype=pseudogene;gene_synonym=ML2554;pseudo=true
AL450380.1	EMBL	CDS	3045791	3046073	.	-	0	ID=cds-nirD;Parent=gene-nirD;Note=Possible pseudogene of M. tuberculosis orthologue nirD (Best blastx score 203);gbkey=CDS;gene=nirD;product=probable nitrite reductase small subunit (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3046132	3048587	.	-	.	ID=gene-nirB;Name=nirB;gbkey=Gene;gene=nirB;gene_biotype=pseudogene;gene_synonym=ML2555;pseudo=true
AL450380.1	EMBL	CDS	3046132	3048587	.	-	0	ID=cds-nirB;Parent=gene-nirB;Note=Possible pseudogene of M. tuberculosis orthologue nirB (Best blastx score 292);gbkey=CDS;gene=nirB;product=nitrite reductase flavoprotein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3048657	3048962	.	+	.	ID=gene-hsp;Name=hsp;gbkey=Gene;gene=hsp;gene_biotype=pseudogene;gene_synonym=ML2556;pseudo=true
AL450380.1	EMBL	CDS	3048657	3048962	.	+	0	ID=cds-hsp;Parent=gene-hsp;Note=Possible pseudogene of M. tuberculosis orthologue hsp (Best blastx score 188);gbkey=CDS;gene=hsp;product=possible heat shock protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	3049283	3049287	.	+	.	ID=id-AL450380.1:3049283..3049287;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	3049294	3049590	.	+	.	ID=gene-ML2557;Name=ML2557;gbkey=Gene;gene=ML2557;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3049294	3049590	.	+	0	ID=cds-CAC32088.1;Parent=gene-ML2557;Dbxref=UniProtKB/TrEMBL:Q7APU6,NCBI_GP:CAC32088.1;Name=CAC32088.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV0250c TR:O53672 (EMBL:AL021929) fasta scores: E(): 2e-26%2C 72.6%25 id in 95 aa.;gbkey=CDS;gene=ML2557;product=conserved hypothetical protein;protein_id=CAC32088.1;transl_table=11
AL450380.1	EMBL	pseudogene	3049666	3050474	.	+	.	ID=gene-ML2558;Name=ML2558;gbkey=Gene;gene=ML2558;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3049666	3050474	.	+	0	ID=cds-ML2558;Parent=gene-ML2558;Note=Possible pseudogene of M. tuberculosis orthologue Rv0249c (Best blastx score 298);gbkey=CDS;gene=ML2558;product=probable membrane anchor protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3050524	3052347	.	+	.	ID=gene-ML2559;Name=ML2559;gbkey=Gene;gene=ML2559;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3050524	3052347	.	+	0	ID=cds-ML2559;Parent=gene-ML2559;Note=Possible pseudogene of M. tuberculosis orthologue Rv0248c (Best blastx score 750);gbkey=CDS;gene=ML2559;product=probable flavoprotein subunit of Rv0247c (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3052443	3053087	.	+	.	ID=gene-ML2560;Name=ML2560;gbkey=Gene;gene=ML2560;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3052443	3053087	.	+	0	ID=cds-ML2560;Parent=gene-ML2560;Note=Possible pseudogene of M. tuberculosis orthologue Rv0247c (Best blastx score 463);gbkey=CDS;gene=ML2560;product=probable iron-sulphur protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3053222	3053710	.	-	.	ID=gene-ML2561;Name=ML2561;gbkey=Gene;gene=ML2561;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3053222	3053710	.	-	0	ID=cds-CAC32092.1;Parent=gene-ML2561;Dbxref=GOA:Q7APU5,InterPro:IPR002563,InterPro:IPR012349,UniProtKB/TrEMBL:Q7APU5,NCBI_GP:CAC32092.1;Name=CAC32092.1;Note=Similar to many including: Mycobacterium tuberculosis hypothetical 17.0 kda protein RV0245 OR MTV034.11 TR:O53667 (EMBL:AL021929) fasta scores: E(): 0%2C 82.0%25 id in 161 aa and Streptomyces pristinaespiralis NADH:riboflavin 5'-phosphate oxidoreductase SNAC SW:SNAC_STRPR (P54994) fasta scores: E(): 2.7e-10%2C 31.6%25 id in 158 aa. Contains Pfam match to entry PF01613 Flavin_Reduct%2C Flavin reductase like domain.;gbkey=CDS;gene=ML2561;product=probable oxidoreductase;protein_id=CAC32092.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3053234	3053665	.	-	.	ID=id-ML2561;Note=Pfam match to entry PF01613 Flavin_Reduct%2C Flavin reductase like domain%2C score 184.10%2C E-value 2.2e-51;gbkey=misc_feature;gene=ML2561
AL450380.1	EMBL	ribosome_entry_site	3054574	3054581	.	+	.	ID=id-AL450380.1:3054574..3054581;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	3054587	3054877	.	+	.	ID=gene-ML2562;Name=ML2562;gbkey=Gene;gene=ML2562;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3054587	3054877	.	+	0	ID=cds-CAC32093.1;Parent=gene-ML2562;Dbxref=UniProtKB/TrEMBL:Q9CD23,NCBI_GP:CAC32093.1;Name=CAC32093.1;Note=unknown function.;gbkey=CDS;gene=ML2562;product=hypothetical protein;protein_id=CAC32093.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	3055217	3055222	.	+	.	ID=id-AL450380.1:3055217..3055222;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	3055229	3057064	.	+	.	ID=gene-fadE5;Name=fadE5;gbkey=Gene;gene=fadE5;gene_biotype=protein_coding;gene_synonym=ML2563
AL450380.1	EMBL	CDS	3055229	3057064	.	+	0	ID=cds-CAC32094.1;Parent=gene-fadE5;Dbxref=GOA:Q7APU4,InterPro:IPR006091,InterPro:IPR009075,InterPro:IPR009100,InterPro:IPR013786,InterPro:IPR020953,InterPro:IPR025878,UniProtKB/TrEMBL:Q7APU4,NCBI_GP:CAC32094.1;Name=CAC32094.1;Note=Similar to Mycobacterium tuberculosis putative acyl-CoA dehydrogenase RV0244C TR:O53666 (EMBL:AL021929) fasta scores: E(): 0%2C 89.4%25 id in 611 aa. Contains 2 Pfam matches to entry PF00441 Acyl-CoA_dh%2C Acyl-CoA dehydrogenase.;gbkey=CDS;gene=fadE5;product=acyl-CoA dehydrogenase;protein_id=CAC32094.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3055718	3056041	.	+	.	ID=id-fadE5;Note=Pfam match to entry PF00441 Acyl-CoA_dh%2C Acyl-CoA dehydrogenase%2C score 56.70%2C E-value 8e-16;gbkey=misc_feature;gene=fadE5
AL450380.1	EMBL	sequence_feature	3056474	3056596	.	+	.	ID=id-fadE5-2;Note=Pfam match to entry PF00441 Acyl-CoA_dh%2C Acyl-CoA dehydrogenase%2C score 34.00%2C E-value 3.9e-09;gbkey=misc_feature;gene=fadE5
AL450380.1	EMBL	gene	3057486	3058859	.	-	.	ID=gene-fadA2;Name=fadA2;gbkey=Gene;gene=fadA2;gene_biotype=protein_coding;gene_synonym=ML2564
AL450380.1	EMBL	CDS	3057486	3058859	.	-	0	ID=cds-CAC32095.1;Parent=gene-fadA2;Dbxref=GOA:Q7APU3,InterPro:IPR002155,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR020610,InterPro:IPR020616,InterPro:IPR020617,UniProtKB/TrEMBL:Q7APU3,NCBI_GP:CAC32095.1;Name=CAC32095.1;Note=Similar to many Prokaryotic and Eukaryotic thiolases including: Escherichia coli probable 3-ketoacyl-coa thiolase YFCY SW:YFCY_ECOLI (P76503) fasta scores: E(): 0%2C 36.9%25 id in 434 aa and to Rattus norvegicus trifunctonal enzyme beta subunit%2C mitochondrial precursor SW:ECHB_RAT (Q60587) fasta scores: E(): 0%2C 37.2%25 id in 462 aa. Contains Pfam match to entry PF00108 thiolase%2C Thiolase. Contains PS00099 Thiolases active site.;gbkey=CDS;gene=fadA2;product=acetyl-CoA C-acetyltransferase;protein_id=CAC32095.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3057489	3058775	.	-	.	ID=id-fadA2;Note=Pfam match to entry PF00108 thiolase%2C Thiolase%2C score 233.40%2C E-value 3.3e-66;gbkey=misc_feature;gene=fadA2
AL450380.1	EMBL	sequence_feature	3057504	3057545	.	-	.	ID=id-fadA2-2;Note=PS00099 Thiolases active site;gbkey=misc_feature;gene=fadA2
AL450380.1	EMBL	gene	3058964	3060328	.	+	.	ID=gene-fabG4;Name=fabG4;gbkey=Gene;gene=fabG4;gene_biotype=protein_coding;gene_synonym=ML2565
AL450380.1	EMBL	CDS	3058964	3060328	.	+	0	ID=cds-CAC32096.1;Parent=gene-fabG4;Dbxref=GOA:Q7APU2,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:Q7APU2,NCBI_GP:CAC32096.1;Name=CAC32096.1;Note=The C-terminal portion of the predicted product of this CDS is highly similar to many 3-oxoacyl-[acyl-carrier protein] reductases e.g. Vibrio harveyi FabG SW:FABG_VIBHA (P55336) fasta scores: E(): 4.5e-27%2C 41.1%25 id in 241 aa. The N-terminus does not appear to be related to anything currently in the database except for the highly similar Mycobacterium tuberculosis putative 3-oxoacyl-[acyl-carrier protein] reductase RV0242C TR:O53665 (EMBL:AL021929) fasta scores: E(): 0%2C 84.8%25 id in 454 aa. Contains Pfam match to entry PF00678 adh_short_C2%2C Short chain dehydrogenase/reductase C-terminus. Contains Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase. Contains PS00061 Short-chain dehydrogenases/reductases family signature.;gbkey=CDS;gene=fabG4;product=possible oxidoreductase;protein_id=CAC32096.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3059603	3060151	.	+	.	ID=id-fabG4;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 164.70%2C E-value 1.6e-45;gbkey=misc_feature;gene=fabG4
AL450380.1	EMBL	sequence_feature	3060002	3060088	.	+	.	ID=id-fabG4-2;Note=PS00061 Short-chain dehydrogenases/reductases family signature;gbkey=misc_feature;gene=fabG4
AL450380.1	EMBL	sequence_feature	3060218	3060301	.	+	.	ID=id-fabG4-3;Note=Pfam match to entry PF00678 adh_short_C2%2C Short chain dehydrogenase/reductase C-terminus%2C score 14.90%2C E-value 0.019;gbkey=misc_feature;gene=fabG4
AL450380.1	EMBL	gene	3061369	3062271	.	+	.	ID=gene-ML2566;Name=ML2566;gbkey=Gene;gene=ML2566;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3061369	3062271	.	+	0	ID=cds-CAC32097.1;Parent=gene-ML2566;Dbxref=GOA:Q9CD22,InterPro:IPR002539,InterPro:IPR003965,InterPro:IPR029069,UniProtKB/TrEMBL:Q9CD22,NCBI_GP:CAC32097.1;Name=CAC32097.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV0241C TR:O53664 (EMBL:AL021929) fasta scores: E(): 0%2C 81.8%25 id in 280 aa%2C and to Streptomyces coelicolor putative dehydratase TR:CAB77291 (EMBL:AL160312) fasta scores: E(): 2.1e-27%2C 39.5%25 id in 271 aa. Contains Pfam match to entry PF01575 MaoC_dehydratas%2C MaoC like domain. Contains PS00211 ABC transporters family signature.;gbkey=CDS;gene=ML2566;product=conserved hypothetical protein;protein_id=CAC32097.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3061906	3062256	.	+	.	ID=id-ML2566;Note=Pfam match to entry PF01575 MaoC_dehydratas%2C MaoC like domain%2C score 104.20%2C E-value 2.6e-27;gbkey=misc_feature;gene=ML2566
AL450380.1	EMBL	sequence_feature	3062056	3062100	.	+	.	ID=id-ML2566-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=ML2566
AL450380.1	EMBL	gene	3062380	3062859	.	+	.	ID=gene-ML2567;Name=ML2567;gbkey=Gene;gene=ML2567;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3062380	3062859	.	+	0	ID=cds-CAC32098.1;Parent=gene-ML2567;Dbxref=UniProtKB/TrEMBL:Q9CD21,NCBI_GP:CAC32098.1;Name=CAC32098.1;Note=function unknown.;gbkey=CDS;gene=ML2567;product=hypothetical protein;protein_id=CAC32098.1;transl_table=11
AL450380.1	EMBL	gene	3063262	3063888	.	-	.	ID=gene-ML2568;Name=ML2568;gbkey=Gene;gene=ML2568;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3063262	3063888	.	-	0	ID=cds-CAC32099.1;Parent=gene-ML2568;Dbxref=GOA:Q7APU1,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR011075,InterPro:IPR015893,UniProtKB/TrEMBL:Q7APU1,NCBI_GP:CAC32099.1;Name=CAC32099.1;Note=Similar to several putative transcriptional regulators e.g. Mycobacterium tuberculosis RV0238 TR:O53661 (EMBL:AL021929) fasta scores: E(): 0%2C 80.9%25 id in 199 aa%2C and to Streptomyces coelicolor TR:CAB77290 (EMBL:AL160312) fasta scores: E(): 2.7e-20%2C 39.0%25 id in 205 aa. Contains Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family.;gbkey=CDS;gene=ML2568;product=possible TetR-family transcriptional regulator;protein_id=CAC32099.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3063700	3063840	.	-	.	ID=id-ML2568;Note=Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family%2C score 70.30%2C E-value 4e-17;gbkey=misc_feature;gene=ML2568
AL450380.1	EMBL	gene	3063958	3065121	.	-	.	ID=gene-ML2569;Name=ML2569;gbkey=Gene;gene=ML2569;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3063958	3065121	.	-	0	ID=cds-CAC32100.1;Parent=gene-ML2569;Dbxref=GOA:Q7APU0,InterPro:IPR001764,InterPro:IPR017853,UniProtKB/TrEMBL:Q7APU0,NCBI_GP:CAC32100.1;Name=CAC32100.1;Note=Similar to Mycobacterium tuberculosis putative lipoprotein RV0237 TR:O53660 (EMBL:AL021929) fasta scores: E(): 0%2C 73.2%25 id in 392 aa. Also similar in regions to several beta-hexosaminidase e.g. Alteromonas sp SW:HEXA_ALTSO (P48823) fasta scores: E(): 4.1e-17%2C 30.0%25 id in 333 aa. Contains a possible N-terminal signal sequence. Contains Pfam match to entry PF00933 Glyco_hydro_3%2C Glycosyl hydrolase family 3 N terminal domain.;gbkey=CDS;gene=ML2569;product=putative secreted glycosyl hydrolase;protein_id=CAC32100.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3064039	3064914	.	-	.	ID=id-ML2569;Note=Pfam match to entry PF00933 Glyco_hydro_3%2C Glycosyl hydrolase family 3 N terminal domain%2C score 260.30%2C E-value 2.6e-74;gbkey=misc_feature;gene=ML2569
AL450380.1	EMBL	ribosome_entry_site	3065257	3065261	.	+	.	ID=id-AL450380.1:3065257..3065261;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	3065268	3065441	.	+	.	ID=gene-ML2569A;Name=ML2569A;gbkey=Gene;gene=ML2569A;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3065268	3065441	.	+	0	ID=cds-CAC32101.1;Parent=gene-ML2569A;Dbxref=InterPro:IPR022566,NCBI_GP:CAC32101.1;Name=CAC32101.1;Note=Orthologue of Mycobacterium tuberculosis%2C Rv0236A%2C small secreted protein with typical N-terminal signal peptide. See J. Bacteriol. 177(1):59-65(1995);gbkey=CDS;gene=ML2569A;product=putative secreted protein;protein_id=CAC32101.1;transl_table=11
AL450380.1	EMBL	gene	3065557	3069774	.	+	.	ID=gene-ML2570;Name=ML2570;gbkey=Gene;gene=ML2570;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3065557	3069774	.	+	0	ID=cds-CAC32102.1;Parent=gene-ML2570;Dbxref=GOA:Q9CD19,InterPro:IPR000421,InterPro:IPR008979,InterPro:IPR021798,UniProtKB/TrEMBL:Q9CD19,NCBI_GP:CAC32102.1;Name=CAC32102.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV0236C TR:P96419 (EMBL:Z92669) fasta scores: E(): 0%2C 78.7%25 id in 1397 aa. Contains a possible N-terminal signal sequence and multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2570;product=possible integral membrane protein;protein_id=CAC32102.1;transl_table=11
AL450380.1	EMBL	pseudogene	3069796	3070539	.	+	.	ID=gene-glpQ2;Name=glpQ2;gbkey=Gene;gene=glpQ2;gene_biotype=pseudogene;gene_synonym=ML2571;pseudo=true
AL450380.1	EMBL	CDS	3069796	3070539	.	+	0	ID=cds-glpQ2;Parent=gene-glpQ2;Note=Possible pseudogene of M. tuberculosis orthologue glpQ2 (Best blastx score 338);gbkey=CDS;gene=glpQ2;product=glycerophosphoryl diester phosphodiesterase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3070530	3071548	.	+	.	ID=gene-ML2572;Name=ML2572;gbkey=Gene;gene=ML2572;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3070530	3071548	.	+	0	ID=cds-ML2572;Parent=gene-ML2572;Note=Possible pseudogene of M. tuberculosis orthologue Rv0235c (Best blastx score 292);gbkey=CDS;gene=ML2572;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	sequence_feature	3072657	3074054	.	+	.	ID=id-AL450380.1:3072657..3074054;Note=Pfam match to entry PF00171 aldedh%2C Aldehyde dehydrogenase family%2C score 412.90%2C E-value 2.9e-120;gbkey=misc_feature
AL450380.1	EMBL	ribosome_entry_site	3072675	3072679	.	+	.	ID=id-AL450380.1:3072675..3072679;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	3072684	3074057	.	+	.	ID=gene-gabD;Name=gabD;gbkey=Gene;gene=gabD;gene_biotype=protein_coding;gene_synonym=ML2573
AL450380.1	EMBL	CDS	3072684	3074057	.	+	0	ID=cds-CAC32105.1;Parent=gene-gabD;Dbxref=GOA:O69497,InterPro:IPR015590,InterPro:IPR016160,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,NCBI_GP:CAC32105.1;Name=CAC32105.1;Note=Similar to Mycobacterium tuberculosis GabD2 OR RV0234C TR:P96417 (EMBL:Z92669) fasta scores: E(): 0%2C 82.9%25 id in 479 aa%2C and to Escherichia coli succinate-semialdehyde dehydrogenase [NADP+] GabD SW:GABD_ECOLI (P25526) fasta scores: E(): 0%2C 35.4%25 id in 460 aa. Contains Pfam match to entry PF00171 aldedh%2C Aldehyde dehydrogenase family. Contains PS00070 Aldehyde dehydrogenases cysteine active site.;gbkey=CDS;gene=gabD;product=succinate-semialdehyde dehydrogenase;protein_id=CAC32105.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3073455	3073490	.	+	.	ID=id-gabD;Note=PS00070 Aldehyde dehydrogenases cysteine active site;gbkey=misc_feature;gene=gabD
AL450380.1	EMBL	pseudogene	3075131	3076026	.	-	.	ID=gene-nrdB;Name=nrdB;gbkey=Gene;gene=nrdB;gene_biotype=pseudogene;gene_synonym=ML2574;pseudo=true
AL450380.1	EMBL	CDS	3075131	3076026	.	-	0	ID=cds-nrdB;Parent=gene-nrdB;Note=Possible pseudogene of M. tuberculosis orthologue nrdB (Best blastx score 384);gbkey=CDS;gene=nrdB;product=ribonucleoside-diphosphate reductase B2 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3076074	3076396	.	-	.	ID=gene-ML2575;Name=ML2575;gbkey=Gene;gene=ML2575;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3076074	3076396	.	-	0	ID=cds-ML2575;Parent=gene-ML2575;Note=Possible pseudogene of M. tuberculosis orthologue Rv0232 (Best blastx score 154);gbkey=CDS;gene=ML2575;product=transcriptional regulator (TetR/AcrR family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3076533	3076839	.	-	.	ID=gene-ML2576;Name=ML2576;gbkey=Gene;gene=ML2576;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3076533	3076839	.	-	0	ID=cds-ML2576;Parent=gene-ML2576;Note=Possible pseudogene of M. tuberculosis orthologue Rv1102c (Best blastx score 138);gbkey=CDS;gene=ML2576;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3076860	3077073	.	-	.	ID=gene-ML2577;Name=ML2577;gbkey=Gene;gene=ML2577;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3076860	3077073	.	-	0	ID=cds-ML2577;Parent=gene-ML2577;Note=Possible pseudogene of M. tuberculosis orthologue Rv1103c (Best blastx score 91);gbkey=CDS;gene=ML2577;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3077129	3078702	.	-	.	ID=gene-fadE4;Name=fadE4;gbkey=Gene;gene=fadE4;gene_biotype=pseudogene;gene_synonym=ML2578;pseudo=true
AL450380.1	EMBL	CDS	3077129	3078702	.	-	0	ID=cds-fadE4;Parent=gene-fadE4;Note=Possible pseudogene of M. tuberculosis orthologue fadE4 (Best blastx score 445);gbkey=CDS;gene=fadE4;product=acyl-CoA dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3078920	3079860	.	+	.	ID=gene-ML2579;Name=ML2579;gbkey=Gene;gene=ML2579;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3078920	3079860	.	+	0	ID=cds-ML2579;Parent=gene-ML2579;Note=Possible pseudogene of M. tuberculosis orthologue Rv0230c (Best blastx score 317);gbkey=CDS;gene=ML2579;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3080175	3081329	.	-	.	ID=gene-ML2580;Name=ML2580;gbkey=Gene;gene=ML2580;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3080175	3081329	.	-	0	ID=cds-CAC32112.1;Parent=gene-ML2580;Dbxref=GOA:Q7APT8,InterPro:IPR002656,UniProtKB/TrEMBL:Q7APT8,NCBI_GP:CAC32112.1;Name=CAC32112.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV0228 TR:P96410 (EMBL:Z92669) fasta scores: E(): 0%2C 79.5%25 id in 381 aa%2C and to Streptomyces mycarofaciens acyltransferase involved in midecamycin biosynthesis SW:MDMB_STRMY (Q00718) fasta scores: E(): 1.3e-13%2C 28.8%25 id in 400 aa.%3B~Similar to ML1101;gbkey=CDS;gene=ML2580;product=possible acyltransferase;protein_id=CAC32112.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	3081521	3081526	.	+	.	ID=id-AL450380.1:3081521..3081526;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	3081538	3082821	.	+	.	ID=gene-ML2581;Name=ML2581;gbkey=Gene;gene=ML2581;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3081538	3082821	.	+	0	ID=cds-CAC32113.1;Parent=gene-ML2581;Dbxref=InterPro:IPR021424,UniProtKB/TrEMBL:Q9CD18,NCBI_GP:CAC32113.1;Name=CAC32113.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV0227C TR:P96409 (EMBL:Z92669) fasta scores: E(): 0%2C 76.6%25 id in 423 aa. Contains a possible N-terminal signal sequence and a possible membrane spanning hydrophobic domain.;gbkey=CDS;gene=ML2581;product=putative integral membrane protein;protein_id=CAC32113.1;transl_table=11
AL450380.1	EMBL	gene	3082923	3084725	.	+	.	ID=gene-ML2582;Name=ML2582;gbkey=Gene;gene=ML2582;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3082923	3084725	.	+	0	ID=cds-CAC32114.1;Parent=gene-ML2582;Dbxref=UniProtKB/TrEMBL:Q9CD17,NCBI_GP:CAC32114.1;Name=CAC32114.1;Note=Similar to Mycobacterium tuberculosis hypothetical 59.1 kda protein RV0226C OR MTCY08D5.21C TR:P96408 (EMBL:Z92669) fasta scores: E(): 0%2C 70.1%25 id in 581 aa. Contains a possible N-terminal signal sequence and multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2582;product=conserved membrane protein;protein_id=CAC32114.1;transl_table=11
AL450380.1	EMBL	gene	3085088	3086272	.	-	.	ID=gene-ML2583;Name=ML2583;gbkey=Gene;gene=ML2583;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3085088	3086272	.	-	0	ID=cds-CAC32115.1;Parent=gene-ML2583;Dbxref=GOA:Q7APT7,InterPro:IPR001296,InterPro:IPR028098,UniProtKB/TrEMBL:Q7APT7,NCBI_GP:CAC32115.1;Name=CAC32115.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV0225 TR:P96407 (EMBL:Z92669) fasta scores: E(): 0%2C 84.9%25 id in 383 aa and to Methanobacterium thermoautotrophicum LPS biosynthesis related protein TR:O26275 (EMBL:AE000805) fasta scores: E(): 9.9e-21%2C 29.3%25 id in 375 aa. Contains Pfam match to entry PF00534 Glycos_transf_1%2C Glycosyl transferases group 1.;gbkey=CDS;gene=ML2583;product=putative glycosyl transferase;protein_id=CAC32115.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3085193	3085708	.	-	.	ID=id-ML2583;Note=Pfam match to entry PF00534 Glycos_transf_1%2C Glycosyl transferases group 1%2C score 129.40%2C E-value 6.4e-35;gbkey=misc_feature;gene=ML2583
AL450380.1	EMBL	gene	3086325	3087134	.	+	.	ID=gene-ML2584;Name=ML2584;gbkey=Gene;gene=ML2584;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3086325	3087134	.	+	0	ID=cds-CAC32116.1;Parent=gene-ML2584;Dbxref=GOA:O69492,InterPro:IPR013216,InterPro:IPR029063,NCBI_GP:CAC32116.1;Name=CAC32116.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV0224C TR:P96406 (EMBL:Z92669) fasta scores: E(): 0%2C 82.9%25 id in 252 aa. Also weakly to several putative methyltransferases e.g. Synechocystis sp sterol-C-methyltransferase TR:P74388 (EMBL:D90914) fasta scores: E(): 7.4e-06%2C 31.1%25 id in 135 aa.;gbkey=CDS;gene=ML2584;product=conserved hypothetical protein;protein_id=CAC32116.1;transl_table=11
AL450380.1	EMBL	pseudogene	3087217	3088575	.	+	.	ID=gene-ML2585;Name=ML2585;gbkey=Gene;gene=ML2585;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3087217	3088575	.	+	0	ID=cds-ML2585;Parent=gene-ML2585;Note=Possible pseudogene of M. tuberculosis orthologue Rv0223c (Best blastx score 581);gbkey=CDS;gene=ML2585;product=aldehyde dehydrogenase (possible betB) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	3089613	3090459	.	+	.	ID=id-AL450380.1:3089613..3090459;Note=847 bp repeat%2C 100%25 identical to region 3142534..3143380;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	3089683	3090457	.	+	.	ID=gene-fadD5;Name=fadD5;gbkey=Gene;gene=fadD5;gene_biotype=pseudogene;gene_synonym=ML2586;pseudo=true
AL450380.1	EMBL	CDS	3089683	3090457	.	+	0	ID=cds-fadD5;Parent=gene-fadD5;Note=Possible pseudogene of M. tuberculosis orthologue fadD5 (Best blastx score 184);gbkey=CDS;gene=fadD5;product=acyl-CoA synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3090766	3091569	.	+	.	ID=gene-yrbE1A;Name=yrbE1A;gbkey=Gene;gene=yrbE1A;gene_biotype=protein_coding;gene_synonym=ML2587
AL450380.1	EMBL	CDS	3090766	3091569	.	+	0	ID=cds-CAC32119.1;Parent=gene-yrbE1A;Dbxref=InterPro:IPR003453,UniProtKB/TrEMBL:Q9CD16,NCBI_GP:CAC32119.1;Name=CAC32119.1;Note=Highly similar to several Mycobacterium tuberculosis hypothetical proteins found within the four Mce loci%2C associated with virulence%2C e.g. RV0167 TR:O07412 (EMBL:Z97050) fasta scores: E(): 0%2C 88.5%25 id in 262 aa. Orthologue of M. tuberculosis YrbE1A (Rv0167). Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=yrbE1A;product=conserved membrane protein;protein_id=CAC32119.1;transl_table=11
AL450380.1	EMBL	gene	3091573	3092442	.	+	.	ID=gene-yrbE1B;Name=yrbE1B;gbkey=Gene;gene=yrbE1B;gene_biotype=protein_coding;gene_synonym=ML2588
AL450380.1	EMBL	CDS	3091573	3092442	.	+	0	ID=cds-CAC32120.1;Parent=gene-yrbE1B;Dbxref=InterPro:IPR003453,UniProtKB/TrEMBL:Q9CD15,NCBI_GP:CAC32120.1;Name=CAC32120.1;Note=Highly similar to several Mycobacterium tuberculosis hypothetical proteins found within the four Mce loci%2C associated with virulence%2C e.g. RV0168 TR:O07413 (EMBL:Z97050) fasta scores: E(): 0%2C 85.1%25 id in 289 aa. Orthologue of M. tuberculosis YrbE1B (Rv0168). Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=yrbE1B;product=conserved membrane protein;protein_id=CAC32120.1;transl_table=11
AL450380.1	EMBL	gene	3092446	3093771	.	+	.	ID=gene-mce1A;Name=mce1A;gbkey=Gene;gene=mce1A;gene_biotype=protein_coding;gene_synonym=ML2589
AL450380.1	EMBL	CDS	3092446	3093771	.	+	0	ID=cds-CAC32121.1;Parent=gene-mce1A;Dbxref=InterPro:IPR003399,InterPro:IPR005693,InterPro:IPR024516,UniProtKB/TrEMBL:Q9CD14,NCBI_GP:CAC32121.1;Name=CAC32121.1;Note=Highly similar to Mycobacterium tuberculosis Mce proteins associated with entry and survival inside macrophage e.g. RV0169 ORMTCI28.08 TR:P72013 (EMBL:Z97050) fasta scores: E(): 0%2C 67.5%25 id in 456 aa.Orthologue of M. tuberculosis Mce1A (Rv0169). Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=mce1A;product=putative cell invasion protein;protein_id=CAC32121.1;transl_table=11
AL450380.1	EMBL	gene	3093768	3094808	.	+	.	ID=gene-mce1B;Name=mce1B;gbkey=Gene;gene=mce1B;gene_biotype=protein_coding;gene_synonym=ML2590
AL450380.1	EMBL	CDS	3093768	3094808	.	+	0	ID=cds-CAC32122.1;Parent=gene-mce1B;Dbxref=InterPro:IPR003399,InterPro:IPR005693,InterPro:IPR024516,UniProtKB/TrEMBL:Q9CD13,NCBI_GP:CAC32122.1;Name=CAC32122.1;Note=Highly similar to several Mycobacterium tuberculosis hypothetical proteins found within the four Mce loci%2C associated with virulence%2C e.g. RV0170 TR:O07414 (EMBL:Z97050) fasta scores: E(): 0%2C 75.1%25 id in 346 aa. Orthologue of M. tuberculosis mce1B (Rv0170). Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=mce1B;product=putative secreted protein;protein_id=CAC32122.1;transl_table=11
AL450380.1	EMBL	gene	3094805	3096364	.	+	.	ID=gene-mce1C;Name=mce1C;gbkey=Gene;gene=mce1C;gene_biotype=protein_coding;gene_synonym=ML2591
AL450380.1	EMBL	CDS	3094805	3096364	.	+	0	ID=cds-CAC32123.1;Parent=gene-mce1C;Dbxref=InterPro:IPR003399,InterPro:IPR005693,InterPro:IPR008360,UniProtKB/TrEMBL:Q9CD12,NCBI_GP:CAC32123.1;Name=CAC32123.1;Note=Highly similar to several Mycobacterium tuberculosis hypothetical proteins found within the four Mce loci%2C associated with virulence%2C e.g.RV0171 TR:O07415 (EMBL:Z97050) fasta scores: E(): 0%2C 72.4%25 id in 525 aa. Orthologue of M. tuberculosis Mce1C (Rv0171). Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=mce1C;product=putative secreted protein;protein_id=CAC32123.1;transl_table=11
AL450380.1	EMBL	gene	3096361	3097956	.	+	.	ID=gene-mce1D;Name=mce1D;gbkey=Gene;gene=mce1D;gene_biotype=protein_coding;gene_synonym=ML2592
AL450380.1	EMBL	CDS	3096361	3097956	.	+	0	ID=cds-CAC32124.1;Parent=gene-mce1D;Dbxref=InterPro:IPR003399,InterPro:IPR005693,UniProtKB/TrEMBL:Q9CD11,NCBI_GP:CAC32124.1;Name=CAC32124.1;Note=Highly similar to several Mycobacterium tuberculosis hypothetical proteins found within the four Mce loci%2C associated with virulence%2C e.g. RV0172 TR:O07416 (EMBL:Z97050) fasta scores: E(): 0%2C 78.1%25 id in 534 aa. Orthologue of M. tuberculosis Mce1D (Rv0172). Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=mce1D;product=putative secreted protein;protein_id=CAC32124.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	3097941	3097945	.	+	.	ID=id-mce1D;Parent=gene-mce1D;gbkey=regulatory;gene=mce1D;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	3097953	3099131	.	+	.	ID=gene-lprK;Name=lprK;gbkey=Gene;gene=lprK;gene_biotype=protein_coding;gene_synonym=ML2593
AL450380.1	EMBL	CDS	3097953	3099131	.	+	0	ID=cds-CAC32125.1;Parent=gene-lprK;Dbxref=InterPro:IPR003399,InterPro:IPR005693,UniProtKB/TrEMBL:Q9CD10,NCBI_GP:CAC32125.1;Name=CAC32125.1;Note=Highly similar to several Mycobacterium tuberculosis hypothetical proteins found within the four Mce loci%2C associated with virulence%2C e.g. RV0173 TR:O07417 (EMBL:Z97050) fasta scores: E(): 0%2C 76.3%25 id in 389 aa. Contains a possible N-terminal signal sequence and an appropriately positioned Prokaryotic membrane lipoprotein lipid attachment site. Orthologue of M. tuberculosis lprK (mce1E%2C Rv0173). Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=CDS;gene=lprK;product=putative lipoprotein;protein_id=CAC32125.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3098019	3098051	.	+	.	ID=id-lprK;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=lprK
AL450380.1	EMBL	gene	3099125	3100675	.	+	.	ID=gene-mce1F;Name=mce1F;gbkey=Gene;gene=mce1F;gene_biotype=protein_coding;gene_synonym=ML2594
AL450380.1	EMBL	CDS	3099125	3100675	.	+	0	ID=cds-CAC32126.1;Parent=gene-mce1F;Dbxref=InterPro:IPR003399,InterPro:IPR005693,UniProtKB/TrEMBL:Q9CD09,NCBI_GP:CAC32126.1;Name=CAC32126.1;Note=Highly similar to several Mycobacterium tuberculosis hypothetical proteins found within the four Mce loci%2C associated with virulence%2C e.g. RV0174 TR:O07418 (EMBL:Z97050) fasta scores: E(): 0%2C 76.5%25 id in 515 aa. Orthologue of M. tuberculosis Mce1F (Rv0174). Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=mce1F;product=putative secreted protein;protein_id=CAC32126.1;transl_table=11
AL450380.1	EMBL	gene	3100808	3101356	.	+	.	ID=gene-ML2595;Name=ML2595;gbkey=Gene;gene=ML2595;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3100808	3101356	.	+	0	ID=cds-CAC32127.1;Parent=gene-ML2595;Dbxref=UniProtKB/TrEMBL:Q9CD08,NCBI_GP:CAC32127.1;Name=CAC32127.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV0175 TR:O07419 (EMBL:Z97050) fasta scores: E(): 0%2C 70.5%25 id in 166 aa. Orthologue of M. tuberculosis Rv0175. Contains a possible membrane spanning hydrophobic domain.;gbkey=CDS;gene=ML2595;product=possible membrane protein;protein_id=CAC32127.1;transl_table=11
AL450380.1	EMBL	gene	3101353	3102330	.	+	.	ID=gene-ML2596;Name=ML2596;gbkey=Gene;gene=ML2596;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3101353	3102330	.	+	0	ID=cds-CAC32128.1;Parent=gene-ML2596;Dbxref=InterPro:IPR010432,UniProtKB/TrEMBL:Q9CD07,NCBI_GP:CAC32128.1;Name=CAC32128.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV0176 TR:O07420 (EMBL:Z97050) fasta scores: E(): 0%2C 54.9%25 id in 319 aa. Contains multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2596;product=conserved membrane protein;protein_id=CAC32128.1;transl_table=11
AL450380.1	EMBL	gene	3102327	3102881	.	+	.	ID=gene-ML2597;Name=ML2597;gbkey=Gene;gene=ML2597;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3102327	3102881	.	+	0	ID=cds-CAC32129.1;Parent=gene-ML2597;Dbxref=UniProtKB/TrEMBL:Q9CD06,NCBI_GP:CAC32129.1;Name=CAC32129.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV0177 TR:O07421 (EMBL:Z97050) fasta scores: E(): 0%2C 60.9%25 id in 184 aa. Contains a possible membrane spanning hydrophobic domain.;gbkey=CDS;gene=ML2597;product=conserved membrane protein;protein_id=CAC32129.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	3102960	3102964	.	+	.	ID=id-AL450380.1:3102960..3102964;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	3102971	3103525	.	+	.	ID=gene-ML2598;Name=ML2598;gbkey=Gene;gene=ML2598;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3102971	3103525	.	+	0	ID=cds-CAC32130.1;Parent=gene-ML2598;Dbxref=UniProtKB/TrEMBL:Q9CD05,NCBI_GP:CAC32130.1;Name=CAC32130.1;Note=Similar to Mycobacterium tuberculosis hypothetical 25.9 kda protein RV0178 TR:O07422 (EMBL:Z97050) fasta scores: E(): 0%2C 65.6%25 id in 244 aa. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=ML2598;product=putative secreted protein;protein_id=CAC32130.1;transl_table=11
AL450380.1	EMBL	pseudogene	3103585	3104610	.	-	.	ID=gene-lprO;Name=lprO;gbkey=Gene;gene=lprO;gene_biotype=pseudogene;gene_synonym=ML2599;pseudo=true
AL450380.1	EMBL	CDS	3103585	3104610	.	-	0	ID=cds-lprO;Parent=gene-lprO;Note=Possible pseudogene of M. tuberculosis orthologue lprO (Best blastx score 158);gbkey=CDS;gene=lprO;product=lipoprotein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3104660	3106057	.	-	.	ID=gene-ML2600;Name=ML2600;gbkey=Gene;gene=ML2600;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3104660	3106057	.	-	0	ID=cds-CAC32132.1;Parent=gene-ML2600;Dbxref=InterPro:IPR022703,UniProtKB/TrEMBL:Q9CD04,NCBI_GP:CAC32132.1;Name=CAC32132.1;Note=Similar to Mycobacterium tuberculosis hypothetical 47.6 kda protein RV0180C TR:O07424 (EMBL:Z97050) fasta scores: E(): 0%2C 76.7%25 id in 447 aa. Contains multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2600;product=probable conserved membrane protein;protein_id=CAC32132.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	3106063	3106067	.	-	.	ID=id-AL450380.1:3106063..3106067;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	3106127	3106788	.	-	.	ID=gene-ML2601;Name=ML2601;gbkey=Gene;gene=ML2601;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3106127	3106788	.	-	0	ID=cds-ML2601;Parent=gene-ML2601;Note=Possible pseudogene of M. tuberculosis orthologue Rv0181c (Best blastx score 140);gbkey=CDS;gene=ML2601;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3106882	3107598	.	-	.	ID=gene-sigG;Name=sigG;gbkey=Gene;gene=sigG;gene_biotype=pseudogene;gene_synonym=ML2602;pseudo=true
AL450380.1	EMBL	CDS	3106882	3107598	.	-	0	ID=cds-sigG;Parent=gene-sigG;Note=Possible pseudogene of M. tuberculosis orthologue sigG (Best blastx score 149);gbkey=CDS;gene=sigG;product=sigma-70 factors ECF subfamily (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3107546	3108385	.	+	.	ID=gene-ML2603;Name=ML2603;gbkey=Gene;gene=ML2603;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3107546	3108385	.	+	0	ID=cds-CAC32135.1;Parent=gene-ML2603;Dbxref=InterPro:IPR000073,InterPro:IPR022742,InterPro:IPR029058,UniProtKB/TrEMBL:Q9CD03,NCBI_GP:CAC32135.1;Name=CAC32135.1;Note=Similar to Mycobacterium tuberculosis possible oxidoreductase RV0183 TR:O07427 (EMBL:Z97050) fasta scores: E(): 0%2C 74.9%25 id in 279 aa%2C and to several putative lipases e.g. Deinococcus radiodurans TR:Q9RU57 (EMBL:AE001997) fasta scores: E(): 2.1e-27%2C 36.4%25 id in 275 aa.;gbkey=CDS;gene=ML2603;product=hypothetical protein;protein_id=CAC32135.1;transl_table=11
AL450380.1	EMBL	gene	3108446	3109195	.	+	.	ID=gene-ML2604;Name=ML2604;gbkey=Gene;gene=ML2604;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3108446	3109195	.	+	0	ID=cds-CAC32136.1;Parent=gene-ML2604;Dbxref=InterPro:IPR024498,UniProtKB/TrEMBL:Q9CD02,NCBI_GP:CAC32136.1;Name=CAC32136.1;Note=Similar to Mycobacterium tuberculosis hypothetical 26.8 kda protein RV0184 TR:O07428 (EMBL:Z97050) fasta scores: E(): 0%2C 81.9%25 id in 249 aa.;gbkey=CDS;gene=ML2604;product=conserved hypothetical protein;protein_id=CAC32136.1;transl_table=11
AL450380.1	EMBL	gene	3109192	3109698	.	+	.	ID=gene-ML2605;Name=ML2605;gbkey=Gene;gene=ML2605;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3109192	3109698	.	+	0	ID=cds-CAC32137.1;Parent=gene-ML2605;Dbxref=InterPro:IPR027595,UniProtKB/TrEMBL:Q7APT5,NCBI_GP:CAC32137.1;Name=CAC32137.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV0185 TR:O07429 (EMBL:Z97050) fasta scores: E(): 0%2C 76.4%25 id in 165 aa.;gbkey=CDS;gene=ML2605;product=conserved hypothetical protein;protein_id=CAC32137.1;transl_table=11
AL450380.1	EMBL	pseudogene	3109764	3110958	.	+	.	ID=gene-bglS;Name=bglS;gbkey=Gene;gene=bglS;gene_biotype=pseudogene;gene_synonym=ML2606;pseudo=true
AL450380.1	EMBL	CDS	3109764	3110958	.	+	0	ID=cds-bglS;Parent=gene-bglS;Note=Possible pseudogene of M. tuberculosis orthologue bglS (Best blastx score 408);gbkey=CDS;gene=bglS;product=[beta]-glucosidase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3112049	3112678	.	-	.	ID=gene-ML2607;Name=ML2607;gbkey=Gene;gene=ML2607;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3112049	3112678	.	-	0	ID=cds-ML2607;Parent=gene-ML2607;Note=Highly similar to Mycobacterium tuberculosis polyketide synthase RV3800C TR:O53579 (EMBL:AL022076);gbkey=CDS;gene=ML2607;product=polyketide synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	repeat_region	3112112	3112681	.	-	.	ID=id-AL450380.1:3112112..3112681;Note=570 bp repeat%2C 100%25 identical to region 128108..128677 in pks13 gene;gbkey=repeat_region
AL450380.1	EMBL	gene	3113024	3114718	.	-	.	ID=gene-ilvD;Name=ilvD;gbkey=Gene;gene=ilvD;gene_biotype=protein_coding;gene_synonym=ML2608
AL450380.1	EMBL	CDS	3113024	3114718	.	-	0	ID=cds-CAC32140.1;Parent=gene-ilvD;Dbxref=GOA:O06069,InterPro:IPR000581,InterPro:IPR004404,InterPro:IPR015928,InterPro:IPR020558,NCBI_GP:CAC32140.1;Name=CAC32140.1;Note=Similar to many Prokaryotic and Eukaryotic dihydroxy-acid dehydratases involved in valine and isoleucine biosynthesis e.g. Mycobacterium tuberculosis RV0189C SW:ILVD_MYCTU (O07433) fasta scores: E(): 0%2C 90.0%25 id in 560 aa%2C Saccharomyces cerevisiae dihydroxy-acid dehydratase%2C mitochondrial precursor ILV3 OR YJR016C OR J1450 SW:ILV3_YEAST (P39522) fasta scores: E(): 0%2C 48.5%25 id in 555 aa. Contains Pfam match to entry PF00920 ILVD_EDD%2C Dehydratase family. Contains PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1.;gbkey=CDS;gene=ilvD;product=dihydroxy-acid dehydratase;protein_id=CAC32140.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3113150	3114517	.	-	.	ID=id-ilvD;Note=Pfam match to entry PF00920 ILVD_EDD%2C Dehydratase family%2C score 994.90%2C E-value 1.9e-295;gbkey=misc_feature;gene=ilvD
AL450380.1	EMBL	sequence_feature	3114311	3114343	.	-	.	ID=id-ilvD-2;Note=PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1;gbkey=misc_feature;gene=ilvD
AL450380.1	EMBL	gene	3114782	3115189	.	+	.	ID=gene-ML2609;Name=ML2609;gbkey=Gene;gene=ML2609;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3114782	3115189	.	+	0	ID=cds-CAC32141.1;Parent=gene-ML2609;Dbxref=InterPro:IPR003735,UniProtKB/TrEMBL:Q7APT4,NCBI_GP:CAC32141.1;Name=CAC32141.1;Note=Similar in parts to several proteins of undefined function e.g. Mycobacterium tuberculosis hypothetical protein RV0190 TR:O07434 (EMBL:Z97050) fasta scores: E(): 6.6e-27%2C 82.6%25 id in 92 aa.;gbkey=CDS;gene=ML2609;product=conserved hypothetical protein;protein_id=CAC32141.1;transl_table=11
AL450380.1	EMBL	pseudogene	3115271	3115730	.	+	.	ID=gene-ML2610;Name=ML2610;gbkey=Gene;gene=ML2610;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3115271	3115730	.	+	0	ID=cds-ML2610;Parent=gene-ML2610;Note=Possible pseudogene of M. tuberculosis orthologue Rv0191 (Best blastx score 133);gbkey=CDS;gene=ML2610;product=probable chloramphenicol resistance protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3116026	3116780	.	+	.	ID=gene-ML2611;Name=ML2611;gbkey=Gene;gene=ML2611;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3116026	3116780	.	+	0	ID=cds-ML2611;Parent=gene-ML2611;Note=Possible pseudogene of M. tuberculosis orthologue Rv0192 (Best blastx score 190);gbkey=CDS;gene=ML2611;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3117035	3118769	.	+	.	ID=gene-ML2612;Name=ML2612;gbkey=Gene;gene=ML2612;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3117035	3118769	.	+	0	ID=cds-ML2612;Parent=gene-ML2612;Note=Possible pseudogene of M. tuberculosis orthologue Rv0197 (Best blastx score 496);gbkey=CDS;gene=ML2612;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3118765	3120768	.	-	.	ID=gene-ML2613;Name=ML2613;gbkey=Gene;gene=ML2613;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3118765	3120768	.	-	0	ID=cds-CAC32145.1;Parent=gene-ML2613;Dbxref=GOA:Q7APT3,InterPro:IPR000718,InterPro:IPR008753,InterPro:IPR018497,InterPro:IPR024079,UniProtKB/TrEMBL:Q7APT3,NCBI_GP:CAC32145.1;Name=CAC32145.1;Note=Similar to Mycobacterium tuberculosis zinc metalloprotease RV0198C TR:O53649 (EMBL:AL021928) fasta scores: E(): 0%2C 80.8%25 id in 667 aa. Also similar to many Eukaryotic metalloproteases denoted endothelin-converting enzymes e.g. Homo sapiens ECE1 SW:ECE1_HUMAN (P42892) fasta scores: E(): 0%2C 32.6%25 id in 685 aa. Contains Pfam match to entry PF01431 Peptidase_M13%2C Peptidase family M13. Contains PS00142 Neutral zinc metallopeptidases.;gbkey=CDS;gene=ML2613;product=probable zinc metalloprotease;protein_id=CAC32145.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3118780	3119391	.	-	.	ID=id-ML2613;Note=Pfam match to entry PF01431 Peptidase_M13%2C Peptidase family M13%2C score 346.10%2C E-value 3.8e-100;gbkey=misc_feature;gene=ML2613
AL450380.1	EMBL	sequence_feature	3119248	3119277	.	-	.	ID=id-ML2613-2;Note=PS00142 Neutral zinc metallopeptidases;gbkey=misc_feature;gene=ML2613
AL450380.1	EMBL	gene	3120828	3121502	.	+	.	ID=gene-ML2614;Name=ML2614;gbkey=Gene;gene=ML2614;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3120828	3121502	.	+	0	ID=cds-CAC32146.1;Parent=gene-ML2614;Dbxref=UniProtKB/TrEMBL:Q7APT2,NCBI_GP:CAC32146.1;Name=CAC32146.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV0199 TR:O53650 (EMBL:AL021928) fasta scores: E(): 0%2C 67.6%25 id in 219 aa. Contains possible membrane spanning hydrophobic domain.;gbkey=CDS;gene=ML2614;product=conserved membrane protein;protein_id=CAC32146.1;transl_table=11
AL450380.1	EMBL	gene	3121499	3122188	.	+	.	ID=gene-ML2615;Name=ML2615;gbkey=Gene;gene=ML2615;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3121499	3122188	.	+	0	ID=cds-CAC32147.1;Parent=gene-ML2615;Dbxref=UniProtKB/TrEMBL:Q7APT1,NCBI_GP:CAC32147.1;Name=CAC32147.1;Note=Similar to several Mycobacterium tuberculosis hypothetical proteins e.g. RV0200 TR:O53651 (EMBL:AL021928) fasta scores: E(): 0%2C 74.7%25 id in 229 aa. Contains a possible N-terminal signal sequence and multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2615;product=probable membrane protein.;protein_id=CAC32147.1;transl_table=11
AL450380.1	EMBL	gene	3122267	3122779	.	-	.	ID=gene-ML2616;Name=ML2616;gbkey=Gene;gene=ML2616;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3122267	3122779	.	-	0	ID=cds-CAC32148.1;Parent=gene-ML2616;Dbxref=GOA:Q7APT0,InterPro:IPR010982,UniProtKB/TrEMBL:Q7APT0,NCBI_GP:CAC32148.1;Name=CAC32148.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV0201C TR:O53652 (EMBL:AL021928) fasta scores: E(): 0%2C 63.9%25 id in 158 aa. Contains PS00402 Binding-protein-dependent transport systems inner membrane comp sign..;gbkey=CDS;gene=ML2616;product=conserved hypothetical protein;protein_id=CAC32148.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3122606	3122692	.	-	.	ID=id-ML2616;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp sign.;gbkey=misc_feature;gene=ML2616
AL450380.1	EMBL	gene	3122776	3125817	.	-	.	ID=gene-ML2617;Name=ML2617;gbkey=Gene;gene=ML2617;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3122776	3125817	.	-	0	ID=cds-CAC32149.1;Parent=gene-ML2617;Dbxref=GOA:O06079,InterPro:IPR000731,InterPro:IPR004869,NCBI_GP:CAC32149.1;Name=CAC32149.1;Note=Similar to Mycobacterium tuberculosis putative membrane protein Mmpl11 RV0202C SW:MMLB_MYCTU (O53653) fasta scores: E(): 0%2C 72.8%25 id in 1017 aa%2C and to Streptomyces coelicolor putative integral membrane protein SC3A4.16C TR:CAB89762 (EMBL:AL354616) fasta scores: E(): 0%2C 31.8%25 id in 761 aa. Contains a possible N-terminal signal sequence and multiple other possible membrane spanning hydrophobic domains.%3B~Similar to ML2620;gbkey=CDS;gene=ML2617;product=conserved integral membrane protein;protein_id=CAC32149.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	3122784	3122789	.	-	.	ID=id-ML2617;Parent=gene-ML2617;gbkey=regulatory;gene=ML2617;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	3126434	3127492	.	-	.	ID=gene-ML2618;Name=ML2618;gbkey=Gene;gene=ML2618;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3126434	3127492	.	-	0	ID=cds-CAC32150.1;Parent=gene-ML2618;Dbxref=InterPro:IPR022791,UniProtKB/TrEMBL:Q9CD01,NCBI_GP:CAC32150.1;Name=CAC32150.1;Note=Similar to several proteins of undefined function including: Mycobacterium tuberculosis RV0204C TR:O53655 (EMBL:AL021928) fasta scores: E(): 0%2C 82.6%25 id in 374 aa%2C and to Methanobacterium thermoautotrophicum SW:YC61_METTH (O27329) fasta scores: E(): 0.00014%2C 24.7%25 id in 324 aa. Contains a possible N-terminal signal sequence and several other possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2618;product=probable integral membrane protein;protein_id=CAC32150.1;transl_table=11
AL450380.1	EMBL	pseudogene	3127766	3128649	.	+	.	ID=gene-ML2619;Name=ML2619;gbkey=Gene;gene=ML2619;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3127766	3128649	.	+	0	ID=cds-ML2619;Parent=gene-ML2619;Note=Possible pseudogene of M. tuberculosis orthologue Rv0205 (Best blastx score 244);gbkey=CDS;gene=ML2619;product=probable membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3128833	3131700	.	-	.	ID=gene-ML2620;Name=ML2620;gbkey=Gene;gene=ML2620;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3128833	3131700	.	-	0	ID=cds-CAC32152.1;Parent=gene-ML2620;Dbxref=GOA:O06081,InterPro:IPR004869,NCBI_GP:CAC32152.1;Name=CAC32152.1;Note=Similar to many Mycobacterium tuberculosis mmp-family membrane proteins e.g. Mmpl3 OR RV0206C SW:MML3_MYCTU (O53657) fasta scores: E(): 0%2C 75.7%25 id in 966 aa%2C and to Streptomyces coelicolor putative membrane transport protein SCF51A.01C TR:Q9RL63 (EMBL:AL121596) fasta scores: E(): 0%2C 28.8%25 id in 791 aa. Contains multiple possible membrane spanning hydrophobic domains.%3B~Similar to ML2617;gbkey=CDS;gene=ML2620;product=conserved integral membrane protein;protein_id=CAC32152.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	3131704	3131710	.	-	.	ID=id-AL450380.1:3131704..3131710;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	3131780	3132367	.	-	.	ID=gene-ML2621;Name=ML2621;gbkey=Gene;gene=ML2621;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3131780	3132367	.	-	0	ID=cds-CAC32153.1;Parent=gene-ML2621;Dbxref=UniProtKB/TrEMBL:Q9CD00,NCBI_GP:CAC32153.1;Name=CAC32153.1;Note=Some similarity in regions to Mycobacterium tuberculosis hypothetical protein RV0207C TR:P96389 (EMBL:Z92669) fasta scores: E(): 0%2C 60.8%25 id in 199 aa%2C and to Schizosaccharomyces pombe hypothetical protein TR:O74960 (EMBL:AL023705) fasta scores: E(): 1%2C 22.2%25 id in 248 aa.;gbkey=CDS;gene=ML2621;product=hypothetical protein;protein_id=CAC32153.1;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	3132372	3132376	.	-	.	ID=id-AL450380.1:3132372..3132376;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	3132576	3133268	.	-	.	ID=gene-ML2622;Name=ML2622;gbkey=Gene;gene=ML2622;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3132576	3133268	.	-	0	ID=cds-CAC32154.1;Parent=gene-ML2622;Dbxref=GOA:Q9CCZ9,InterPro:IPR003358,InterPro:IPR029063,NCBI_GP:CAC32154.1;Name=CAC32154.1;Note=Similar to several proteins of undefined function including: Mycobacterium tuberculosis RV0208C TR:P96390 (EMBL:Z92669) fasta scores: E(): 0%2C 64.2%25 id in 246 aa%2C and to Neisseria meningitidis TR:AAF41703 (EMBL:AE002481) fasta scores: E(): 6e-25%2C 34.9%25 id in 232 aa.;gbkey=CDS;gene=ML2622;product=conserved hypothetical protein;protein_id=CAC32154.1;transl_table=11
AL450380.1	EMBL	pseudogene	3133971	3134959	.	+	.	ID=gene-ML2623;Name=ML2623;gbkey=Gene;gene=ML2623;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3133971	3134959	.	+	0	ID=cds-ML2623;Parent=gene-ML2623;Note=Possible pseudogene of M. tuberculosis orthologue Rv0210 (Best blastx score 168);gbkey=CDS;gene=ML2623;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3135274	3137103	.	+	.	ID=gene-pckA;Name=pckA;gbkey=Gene;gene=pckA;gene_biotype=protein_coding;gene_synonym=ML2624
AL450380.1	EMBL	CDS	3135274	3137103	.	+	0	ID=cds-CAC32156.1;Parent=gene-pckA;Dbxref=GOA:O06084,InterPro:IPR008209,InterPro:IPR008210,InterPro:IPR013035,InterPro:IPR018091,NCBI_GP:CAC32156.1;Name=CAC32156.1;Note=Similar to many Prokaryotic and Eukaryotic phosphoenolpyruvate carboxykinases including: Mycobacterium tuberculosis RV0211 SW:PPCK_MYCTU (P96393) fasta scores: E(): 0%2C 86.1%25 id in 605 aa%2C Chlorobium limicola SW:PPCK_CHLLI (Q08262) fasta scores: E(): 0%2C 56.1%25 id in 592 aa and to Rattus norvegicus SW:PPCC_RAT (P07379) fasta scores: E(): 0%2C 50.3%25 id in 624 aa. Contains Pfam match to entry PF00821 PEPCK%2C Phosphoenolpyruvate carboxykinase. Contains PS00505 Phosphoenolpyruvate carboxykinase (GTP) signature.;gbkey=CDS;gene=pckA;product=phosphoenolpyruvate carboxykinase;protein_id=CAC32156.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3135334	3137097	.	+	.	ID=id-pckA;Note=Pfam match to entry PF00821 PEPCK%2C Phosphoenolpyruvate carboxykinase%2C score 1578.60%2C E-value 0;gbkey=misc_feature;gene=pckA
AL450380.1	EMBL	sequence_feature	3136078	3136104	.	+	.	ID=id-pckA-2;Note=PS00505 Phosphoenolpyruvate carboxykinase (GTP) signature;gbkey=misc_feature;gene=pckA
AL450380.1	EMBL	pseudogene	3137841	3138089	.	+	.	ID=gene-fadD4;Name=fadD4;gbkey=Gene;gene=fadD4;gene_biotype=pseudogene;gene_synonym=ML2625;pseudo=true
AL450380.1	EMBL	CDS	3137841	3138089	.	+	0	ID=cds-fadD4;Parent=gene-fadD4;Note=Possible pseudogene of M. tuberculosis orthologue fadD4 (Best blastx score 231);gbkey=CDS;gene=fadD4;product=acyl-CoA synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3139459	3139975	.	-	.	ID=gene-fadE3;Name=fadE3;gbkey=Gene;gene=fadE3;gene_biotype=pseudogene;gene_synonym=ML2626;pseudo=true
AL450380.1	EMBL	CDS	3139459	3139975	.	-	0	ID=cds-fadE3;Parent=gene-fadE3;Note=Possible pseudogene of M. tuberculosis orthologue fadE3 (Best blastx score 159);gbkey=CDS;gene=fadE3;product=acyl-CoA dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3140261	3141280	.	+	.	ID=gene-ML2627;Name=ML2627;gbkey=Gene;gene=ML2627;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3140261	3141280	.	+	0	ID=cds-CAC32159.1;Parent=gene-ML2627;Dbxref=InterPro:IPR016790,InterPro:IPR029069,UniProtKB/TrEMBL:Q7APS9,NCBI_GP:CAC32159.1;Name=CAC32159.1;Note=Similar to Mycobacterium tuberculosis hypothetical 35.8 kda protein RV0216 OR MTCY08D5.11 TR:P96398 (EMBL:Z92669) fasta scores: E(): 0%2C 74.0%25 id in 338 aa.;gbkey=CDS;gene=ML2627;product=conserved hypothetical protein;protein_id=CAC32159.1;transl_table=11
AL450380.1	EMBL	repeat_region	3142534	3143380	.	-	.	ID=id-AL450380.1:3142534..3143380;Note=847 bp repeat%2C 100%25 identical to region 3089613..3090459;gbkey=repeat_region
AL450380.1	EMBL	pseudogene	3142536	3143908	.	-	.	ID=gene-fadD5-2;Name=fadD5;gbkey=Gene;gene=fadD5;gene_biotype=pseudogene;gene_synonym=ML2628;pseudo=true
AL450380.1	EMBL	CDS	3142536	3143908	.	-	0	ID=cds-fadD5-2;Parent=gene-fadD5-2;Note=Possible pseudogene of M. tuberculosis orthologue fadD5 (Best blastx score 184);gbkey=CDS;gene=fadD5;product=acyl-CoA synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3144572	3145042	.	-	.	ID=gene-ML2629;Name=ML2629;gbkey=Gene;gene=ML2629;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3144572	3145042	.	-	0	ID=cds-CAC32161.1;Parent=gene-ML2629;Dbxref=InterPro:IPR005031,InterPro:IPR023393,UniProtKB/TrEMBL:Q7APS8,NCBI_GP:CAC32161.1;Name=CAC32161.1;Note=Weakly similar to a number of proteins of undefined function e.g. Mycobacterium tuberculosis RV0854 TR:O53866 (EMBL:AL022004) fasta scores: E(): 7.1e-07%2C 24.6%25 id in 134 aa.%3B~Similar to ML0124;gbkey=CDS;gene=ML2629;product=hypothetical protein;protein_id=CAC32161.1;transl_table=11
AL450380.1	EMBL	repeat_region	3145214	3145498	.	+	.	ID=id-AL450380.1:3145214..3145498;Note=285 bp repeat%2C 98%25 (280/285) identical to region complement (11473..11189);gbkey=repeat_region
AL450380.1	EMBL	gene	3145226	3145597	.	-	.	ID=gene-ML2630;Name=ML2630;gbkey=Gene;gene=ML2630;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3145226	3145597	.	-	0	ID=cds-CAC32162.1;Parent=gene-ML2630;Dbxref=NCBI_GP:CAC32162.1;Name=CAC32162.1;Note=Highly similar in parts to another Mycobacterium leprae hypothetical protein TR:O32870 (EMBL:Z70722) fasta scores: E(): 2.7e-28%2C 96.6%25 id in 88 aa. Note this is a possible pseudogene likely to have been formed as a consequence of a duplication event.%3B~Highly similar to part of ML0007;gbkey=CDS;gene=ML2630;product=hypothetical protein;protein_id=CAC32162.1;transl_table=11
AL450380.1	EMBL	gene	3147695	3149044	.	-	.	ID=gene-ML2631;Name=ML2631;gbkey=Gene;gene=ML2631;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3147695	3149044	.	-	0	ID=cds-CAC32163.1;Parent=gene-ML2631;Dbxref=GOA:Q7APS7,InterPro:IPR004113,InterPro:IPR006094,InterPro:IPR016164,InterPro:IPR016166,InterPro:IPR016167,InterPro:IPR016169,InterPro:IPR016171,UniProtKB/TrEMBL:Q7APS7,NCBI_GP:CAC32163.1;Name=CAC32163.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV0161 TR:O07406 (EMBL:Z97050) fasta scores: E(): 0%2C 78.8%25 id in 449 aa%2C and to Escherichia coli glycolate oxidase subunit GlcD SW:GLCD_ECOLI (P52075) fasta scores: E(): 1.1e-29%2C 28.7%25 id in 457 aa. Contains Pfam match to entry PF01565 FAD_binding_4%2C FAD binding domain.%3B~Similar to ML1103;gbkey=CDS;gene=ML2631;product=possible oxidoreductase;protein_id=CAC32163.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3148436	3149038	.	-	.	ID=id-ML2631;Note=Pfam match to entry PF01565 FAD_binding_4%2C FAD binding domain%2C score 291.50%2C E-value 1e-83;gbkey=misc_feature;gene=ML2631
AL450380.1	EMBL	pseudogene	3149636	3150478	.	+	.	ID=gene-PE-8;Name=PE;gbkey=Gene;gene=PE;gene_biotype=pseudogene;gene_synonym=ML2632;pseudo=true
AL450380.1	EMBL	CDS	3149636	3150478	.	+	0	ID=cds-PE-7;Parent=gene-PE-8;Note=Possible pseudogene of M. tuberculosis orthologue PE (Best blastx score 165);gbkey=CDS;gene=PE;product=PE-family protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3150505	3151120	.	-	.	ID=gene-ML2633;Name=ML2633;gbkey=Gene;gene=ML2633;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3150505	3151120	.	-	0	ID=cds-ML2633;Parent=gene-ML2633;Note=Possible pseudogene of M. tuberculosis orthologue Rv0158 (Best blastx score 272);gbkey=CDS;gene=ML2633;product=transcriptional regulator (TetR/AcrR family) (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3151464	3152882	.	-	.	ID=gene-pntB;Name=pntB;gbkey=Gene;gene=pntB;gene_biotype=protein_coding;gene_synonym=ML2634
AL450380.1	EMBL	CDS	3151464	3152882	.	-	0	ID=cds-CAC32166.1;Parent=gene-pntB;Dbxref=GOA:Q9CCZ8,InterPro:IPR012136,InterPro:IPR029035,UniProtKB/TrEMBL:Q9CCZ8,NCBI_GP:CAC32166.1;Name=CAC32166.1;Note=Similar to Mycobacterium tuberculosis PntB OR RV0157 TR:P96834 (EMBL:Z92770) fasta scores: E(): 0%2C 87.3%25 id in 473 aa%2C Rhodospirillum rubrum nicotinamide nucleotide transhydrogenase%2C subunit beta PntB TR:Q59765 (EMBL:U01158) fasta scores: E(): 0%2C 46.5%25 id in 469 aa and to Escherichia coli NAD PntB SW:PNTB_ECOLI (P07002%3B P76890) fasta scores: E(): 0%2C 43.5%25 id in 476 aa.;gbkey=CDS;gene=pntB;product=pyridine transhydrogenase subunit [beta];protein_id=CAC32166.1;transl_table=11
AL450380.1	EMBL	gene	3152879	3153217	.	-	.	ID=gene-pntAB;Name=pntAB;gbkey=Gene;gene=pntAB;gene_biotype=protein_coding;gene_synonym=ML2635
AL450380.1	EMBL	CDS	3152879	3153217	.	-	0	ID=cds-CAC32167.1;Parent=gene-pntAB;Dbxref=InterPro:IPR024605,UniProtKB/TrEMBL:Q9CCZ7,NCBI_GP:CAC32167.1;Name=CAC32167.1;Note=Similar to Mycobacterium tuberculosis PntAB OR RV0156 TR:P96833 (EMBL:Z92770) fasta scores: E(): 3.5e-30%2C 83.0%25 id in 100 aa%2C and to Rhodospirillum rubrum nicotinamide nucleotide transhydrogenase%2C subunit alpha 2 PntAB TR:Q59764 (EMBL:U01158) fasta scores: E(): 6.1e-11%2C 42.7%25 id in 89 aa. Note this is the equivalent to the very C-terminal hydrophobic domain of the larger E. coli and bovine mitochondrial enzymes. Contains possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF01262 AlaDh_PNT%2C Alanine dehydrogenase/pyridine nucleotide transhydrogenase.;gbkey=CDS;gene=pntAB;product=pyridine transhydrogenase subunit [alpha]2;protein_id=CAC32167.1;transl_table=11
AL450380.1	EMBL	gene	3153210	3154313	.	-	.	ID=gene-pntAA;Name=pntAA;gbkey=Gene;gene=pntAA;gene_biotype=protein_coding;gene_synonym=ML2636
AL450380.1	EMBL	CDS	3153210	3154313	.	-	0	ID=cds-CAC32168.1;Parent=gene-pntAA;Dbxref=GOA:Q9CCZ6,InterPro:IPR007698,InterPro:IPR007886,InterPro:IPR026255,UniProtKB/TrEMBL:Q9CCZ6,NCBI_GP:CAC32168.1;Name=CAC32168.1;Note=Similar to Mycobacterium tuberculosis PntAA OR RV0155 TR:P96832 (EMBL:Z92770) fasta scores: E(): 0%2C 87.9%25 id in 365 aa%2C Haemophilus influenzae NAD PntA SW:PNTA_HAEIN (P43842) fasta scores: E(): 0%2C 42.6%25 id in 364 aa%2C and to Escherichia coli NAD PntA SW:PNTA_ECOLI (P07001%3B P76888) fasta scores: E(): 0%2C 42.1%25 id in 363 aa. Contains Pfam match to entry PF01262 AlaDh_PNT%2C Alanine dehydrogenase/pyridine nucleotide transhydrogenase.;gbkey=CDS;gene=pntAA;product=pyridine transhydrogenase subunit [alpha]1;protein_id=CAC32168.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3153213	3154298	.	-	.	ID=id-pntAA;Note=Pfam match to entry PF01262 AlaDh_PNT%2C Alanine dehydrogenase/pyridine nucleotide transhydrogenase%2C score 265.50%2C E-value 7.1e-76;gbkey=misc_feature;gene=pntAA
AL450380.1	EMBL	pseudogene	3154959	3155405	.	+	.	ID=gene-fadE2;Name=fadE2;gbkey=Gene;gene=fadE2;gene_biotype=pseudogene;gene_synonym=ML2637;pseudo=true
AL450380.1	EMBL	CDS	3154959	3155405	.	+	0	ID=cds-fadE2;Parent=gene-fadE2;Note=Possible pseudogene of M. tuberculosis orthologue fadE2 (Best blastx score 177);gbkey=CDS;gene=fadE2;product=acyl-CoA dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3155961	3156505	.	-	.	ID=gene-ML2638;Name=ML2638;gbkey=Gene;gene=ML2638;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3155961	3156505	.	-	0	ID=cds-ML2638;Parent=gene-ML2638;Note=Possible pseudogene of M. tuberculosis orthologue Rv0149 (Best blastx score 121);gbkey=CDS;gene=ML2638;product=putative oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3157362	3158867	.	-	.	ID=gene-ML2639;Name=ML2639;gbkey=Gene;gene=ML2639;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3157362	3158867	.	-	0	ID=cds-CAC32171.1;Parent=gene-ML2639;Dbxref=GOA:Q9CCZ5,InterPro:IPR012394,InterPro:IPR015590,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR029510,UniProtKB/TrEMBL:Q9CCZ5,NCBI_GP:CAC32171.1;Name=CAC32171.1;Note=Similar to many Prokaryotic and Eukaryotic aldehyde dehydrogenases including: Mycobacterium tuberculosis hypothetical 55.0 kda protein RV0147 TR:P96824 (EMBL:Z92770) fasta scores: E(): 0%2C 77.1%25 id in 493 aa and Homo sapiens aldehyde dehydrogenase%2C dimeric NADP-preferring ALDH3 SW:DHAP_HUMAN (P30838) fasta scores: E(): 0%2C 44.7%25 id in 450 aa. Contains Pfam match to entry PF00171 aldedh%2C Aldehyde dehydrogenase family. Contains PS00687 Aldehyde dehydrogenases glutamic acid active site.;gbkey=CDS;gene=ML2639;product=aldehyde dehydrogenase;protein_id=CAC32171.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3157440	3158801	.	-	.	ID=id-ML2639;Note=Pfam match to entry PF00171 aldedh%2C Aldehyde dehydrogenase family%2C score 417.10%2C E-value 1.6e-121;gbkey=misc_feature;gene=ML2639
AL450380.1	EMBL	sequence_feature	3158103	3158126	.	-	.	ID=id-ML2639-2;Note=PS00687 Aldehyde dehydrogenases glutamic acid active site;gbkey=misc_feature;gene=ML2639
AL450380.1	EMBL	gene	3159055	3159987	.	-	.	ID=gene-ML2640;Name=ML2640;gbkey=Gene;gene=ML2640;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3159055	3159987	.	-	0	ID=cds-CAC32172.1;Parent=gene-ML2640;Dbxref=GOA:Q9CCZ4,InterPro:IPR007213,InterPro:IPR011610,InterPro:IPR029063,PDB:2CKD,PDB:2UYO,PDB:2UYQ,NCBI_GP:CAC32172.1;Name=CAC32172.1;Note=Highly similar to many Mycobacterium tuberculosis hypothetical proteins e.g. RV0146 TR:P96823 (EMBL:Z92770) fasta scores: E(): 0%2C 78.1%25 id in 310 aa.;gbkey=CDS;gene=ML2640;product=conserved hypothetical protein;protein_id=CAC32172.1;transl_table=11
AL450380.1	EMBL	pseudogene	3160306	3160863	.	-	.	ID=gene-ML2641;Name=ML2641;gbkey=Gene;gene=ML2641;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3160306	3160863	.	-	0	ID=cds-ML2641;Parent=gene-ML2641;Note=Possible pseudogene of M. tuberculosis orthologue Rv0145;gbkey=CDS;gene=ML2641;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3161020	3161644	.	-	.	ID=gene-ML2642;Name=ML2642;gbkey=Gene;gene=ML2642;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3161020	3161644	.	-	0	ID=cds-ML2642;Parent=gene-ML2642;Note=Possible pseudogene of M. tuberculosis orthologue Rv0144 (Best blastx score 349);gbkey=CDS;gene=ML2642;product=putative transcriptional regulator (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3162733	3163645	.	+	.	ID=gene-ML2643;Name=ML2643;gbkey=Gene;gene=ML2643;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3162733	3163645	.	+	0	ID=cds-ML2643;Parent=gene-ML2643;Note=Possible pseudogene of M. tuberculosis orthologue Rv0143c (Best blastx score 262);gbkey=CDS;gene=ML2643;product=probable chloride channel (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3163928	3164210	.	+	.	ID=gene-ML2644;Name=ML2644;gbkey=Gene;gene=ML2644;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3163928	3164210	.	+	0	ID=cds-ML2644;Parent=gene-ML2644;Note=Possible pseudogene of M. tuberculosis orthologue Rv0141c (Best blastx score 119);gbkey=CDS;gene=ML2644;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3165188	3166125	.	-	.	ID=gene-ML2645;Name=ML2645;gbkey=Gene;gene=ML2645;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3165188	3166125	.	-	0	ID=cds-ML2645;Parent=gene-ML2645;Note=Possible pseudogene of M. tuberculosis orthologue Rv0139 (Best blastx score 248);gbkey=CDS;gene=ML2645;product=putative oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3166251	3166644	.	-	.	ID=gene-ML2646;Name=ML2646;gbkey=Gene;gene=ML2646;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3166251	3166644	.	-	0	ID=cds-ML2646;Parent=gene-ML2646;Note=Possible pseudogene of M. tuberculosis orthologue Rv0138 (Best blastx score 104);gbkey=CDS;gene=ML2646;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3166865	3167398	.	+	.	ID=gene-ML2647;Name=ML2647;gbkey=Gene;gene=ML2647;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3166865	3167398	.	+	0	ID=cds-CAC32179.1;Parent=gene-ML2647;Dbxref=GOA:Q9CCZ3,InterPro:IPR002569,InterPro:IPR028427,NCBI_GP:CAC32179.1;Name=CAC32179.1;Note=Similar to in regions to several methionine sulfoxide reductases including: Pseudomonas fluorescens putative methionine sulfoxide reductase TR:O69761 (EMBL:L49465) fasta scores: E(): 0%2C 70.0%25 in 160 aa%2C and to Mycobacterium tuberculosis hypothetical 20.5 kda protein TR:P96814 (EMBL:Z92770) fasta scores: E(): 0%2C 80.0%25 in 170 aa%2C and to Escherichia coli peptide methionine sulfoxide reductase SW:PMSR_ECOLI (P27110) fasta scores: E(): 3e-25%2C 48.4%25 in 155 aa. Contains Pfam match to entry PF01625 PMSR%2C Peptide methionine sulfoxide reductase.;gbkey=CDS;gene=ML2647;product=putative peptide methionine sulfoxide;protein_id=CAC32179.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3166883	3167344	.	+	.	ID=id-ML2647;Note=Pfam match to entry PF01625 PMSR%2C Peptide methionine sulfoxide reductase%2C score 324.10%2C E-value 1.7e-93;gbkey=misc_feature;gene=ML2647
AL450380.1	EMBL	pseudogene	3167438	3168451	.	-	.	ID=gene-ML2648;Name=ML2648;gbkey=Gene;gene=ML2648;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3167438	3168451	.	-	0	ID=cds-ML2648;Parent=gene-ML2648;Note=Possible pseudogene of M. tuberculosis orthologue Rv0136 (Best blastx score 166);gbkey=CDS;gene=ML2648;product=cytochrome p450 (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3169324	3170139	.	-	.	ID=gene-ML2649;Name=ML2649;gbkey=Gene;gene=ML2649;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3169324	3170139	.	-	0	ID=cds-CAC32181.1;Parent=gene-ML2649;Dbxref=GOA:Q9CCZ2,InterPro:IPR002509,InterPro:IPR006311,InterPro:IPR011330,InterPro:IPR019546,UniProtKB/TrEMBL:Q9CCZ2,NCBI_GP:CAC32181.1;Name=CAC32181.1;Note=Weakly similar to Streptomyces coelicolor putative oligosaccharide deacetylase TR:Q9RCX4 (EMBL:AL133469) fasta scores: E(): 4.5e-10%2C 30.9%25 in 165 aa%2C and to Bacillus cereus polysaccharide deacetylase-like protein TR:Q9XBJ5 (EMBL:AJ010139) fasta scores: E(): 2.4e-07%2C 26.6%25 in 241 aa. Contains Pfam match to entry PF01522 Polysac_deacet%2C Polysaccharide deacetylase. Contains PS00453 FKBP-type peptidyl-prolyl cis-trans isomerase signature 1.;gbkey=CDS;gene=ML2649;product=hypothetical protein;protein_id=CAC32181.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3169459	3169911	.	-	.	ID=id-ML2649;Note=Pfam match to entry PF01522 Polysac_deacet%2C Polysaccharide deacetylase%2C score 58.30%2C E-value 1.7e-13;gbkey=misc_feature;gene=ML2649
AL450380.1	EMBL	sequence_feature	3169504	3169554	.	-	.	ID=id-ML2649-2;Note=PS00453 FKBP-type peptidyl-prolyl cis-trans isomerase signature 1;gbkey=misc_feature;gene=ML2649
AL450380.1	EMBL	ribosome_entry_site	3170147	3170150	.	-	.	ID=id-AL450380.1:3170147..3170150;Note=possible RBS for ML2649;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	pseudogene	3171323	3172478	.	-	.	ID=gene-ML2650;Name=ML2650;gbkey=Gene;gene=ML2650;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3171323	3172478	.	-	0	ID=cds-ML2650;Parent=gene-ML2650;Note=Possible pseudogene of M. tuberculosis orthologue Rv1639c (Best blastx score 321);gbkey=CDS;gene=ML2650;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3173289	3173606	.	+	.	ID=gene-ML2651;Name=ML2651;gbkey=Gene;gene=ML2651;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3173289	3173606	.	+	0	ID=cds-CAC32183.1;Parent=gene-ML2651;Dbxref=UniProtKB/TrEMBL:Q9CCZ1,NCBI_GP:CAC32183.1;Name=CAC32183.1;Note=unknown function.;gbkey=CDS;gene=ML2651;product=doubtful CDS;protein_id=CAC32183.1;transl_table=11
AL450380.1	EMBL	pseudogene	3173920	3174408	.	+	.	ID=gene-ML2652;Name=ML2652;gbkey=Gene;gene=ML2652;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3173920	3174408	.	+	0	ID=cds-ML2652;Parent=gene-ML2652;Note=Possible pseudogene of M. tuberculosis orthologue Rv0088 (Best blastx score 157);gbkey=CDS;gene=ML2652;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3176081	3176563	.	+	.	ID=gene-ML2653;Name=ML2653;gbkey=Gene;gene=ML2653;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3176081	3176563	.	+	0	ID=cds-ML2653;Parent=gene-ML2653;Note=Possible pseudogene of M. tuberculosis orthologue Rv0090 (Best blastx score 245);gbkey=CDS;gene=ML2653;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3176727	3177224	.	+	.	ID=gene-ML2654;Name=ML2654;gbkey=Gene;gene=ML2654;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3176727	3177224	.	+	0	ID=cds-CAC32186.1;Parent=gene-ML2654;Dbxref=InterPro:IPR000979,InterPro:IPR024654,InterPro:IPR029052,UniProtKB/TrEMBL:Q9CCZ0,NCBI_GP:CAC32186.1;Name=CAC32186.1;Note=Similar to many proteins of undefined function e.g. Streptomyces coelicolor hypothetical 18.3 kda protein TR:Q9RJE5 (EMBL:AL133171) fasta scores: E(): 0%2C 60.1%25 in 163 aa. Contains Pfam match to entry PF01143 UPF0025%2C Uncharacterized protein family UPF0025.;gbkey=CDS;gene=ML2654;product=conserved hypotehical protein;protein_id=CAC32186.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3176727	3177218	.	+	.	ID=id-ML2654;Note=Pfam match to entry PF01143 UPF0025%2C Uncharacterized protein family UPF0025%2C score 62.20%2C E-value 1.1e-14;gbkey=misc_feature;gene=ML2654
AL450380.1	EMBL	gene	3177813	3178814	.	+	.	ID=gene-fbpC2;Name=fbpC2;gbkey=Gene;gene=fbpC2;gene_biotype=protein_coding;gene_synonym=ML2655
AL450380.1	EMBL	CDS	3177813	3178814	.	+	0	ID=cds-CAC32187.1;Parent=gene-fbpC2;Dbxref=GOA:Q05862,InterPro:IPR000801,InterPro:IPR029058,NCBI_GP:CAC32187.1;Name=CAC32187.1;Note=Previously sequenced and characterised: Mycobacterium leprae antigen 85-A precursor SW:A85C_MYCLE (Q05862) fasta scores: E(): 0%2C 100.0%25 in 333 aa. Contains a possible N-terminal signal sequence. Contains Pfam match to entry PF00756 Esterase%2C Putative esterase.%3B~Similar to ML0097 and ML2028;gbkey=CDS;gene=fbpC2;product=secreted antigen 85A%2C mycolyltransferase;protein_id=CAC32187.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3177915	3178565	.	+	.	ID=id-fbpC2;Note=Pfam match to entry PF00756 Esterase%2C Putative esterase%2C score 402.90%2C E-value 3.1e-117;gbkey=misc_feature;gene=fbpC2
AL450380.1	EMBL	pseudogene	3178884	3179171	.	-	.	ID=gene-ML2656;Name=ML2656;gbkey=Gene;gene=ML2656;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3178884	3179171	.	-	0	ID=cds-ML2656;Parent=gene-ML2656;Note=Possible pseudogene of M. tuberculosis orthologue R0128;gbkey=CDS;gene=ML2656;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3179427	3179926	.	-	.	ID=gene-ML2657;Name=ML2657;gbkey=Gene;gene=ML2657;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3179427	3179926	.	-	0	ID=cds-ML2657;Parent=gene-ML2657;Note=Possible pseudogene of M. tuberculosis orthologue Rv0127 (Best blastx score 255);gbkey=CDS;gene=ML2657;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3180259	3181904	.	-	.	ID=gene-ML2658;Name=ML2658;gbkey=Gene;gene=ML2658;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3180259	3181904	.	-	0	ID=cds-ML2658;Parent=gene-ML2658;Note=Possible pseudogene of M. tuberculosis orthologue Rv0126 (Best blastx score 589);gbkey=CDS;gene=ML2658;product=probable glycosyl hydrolase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3182074	3183138	.	-	.	ID=gene-ML2659;Name=ML2659;gbkey=Gene;gene=ML2659;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3182074	3183138	.	-	0	ID=cds-CAC32191.1;Parent=gene-ML2659;Dbxref=GOA:Q9CCY9,InterPro:IPR001478,InterPro:IPR001940,InterPro:IPR009003,UniProtKB/TrEMBL:Q9CCY9,NCBI_GP:CAC32191.1;Name=CAC32191.1;Note=Similar to many including: Mycobacterium paratuberculosis 34 kda protein precursor TR:Q50320 (EMBL:Z23092) fasta scores: E(): 0%2C 71.4%25 in 364 aa%2C Mycobacterium tuberculosis hypothetical 34.9 kda protein TR:O07175 (EMBL:Z96071) fasta scores: E(): 0%2C 70.1%25 in 358 aa%2C and to Escherichia coli protease DegS precursor SW:DEGS_ECOLI (P31137) fasta scores: E(): 2.1e-16%2C 32.0%25 in 356 aa. Contains a possible N-terminal signal sequence. Contains Pfam match to entry PF00089 trypsin%2C Trypsin. Contains Pfam match to entry PF00595 PDZ%2C PDZ domain (Also known as DHR or GLGF)..;gbkey=CDS;gene=ML2659;product=probable secreted serine protease;protein_id=CAC32191.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3182128	3182361	.	-	.	ID=id-ML2659;Note=Pfam match to entry PF00595 PDZ%2C PDZ domain (Also known as DHR or GLGF).%2C score 34.90%2C E-value 1.9e-06;gbkey=misc_feature;gene=ML2659
AL450380.1	EMBL	sequence_feature	3182392	3182901	.	-	.	ID=id-ML2659-2;Note=Pfam match to entry PF00089 trypsin%2C Trypsin%2C score 31.80%2C E-value 3.1e-09;gbkey=misc_feature;gene=ML2659
AL450380.1	EMBL	pseudogene	3184045	3185236	.	+	.	ID=gene-fusA2;Name=fusA2;gbkey=Gene;gene=fusA2;gene_biotype=pseudogene;gene_synonym=ML2660;pseudo=true
AL450380.1	EMBL	CDS	3184045	3185236	.	+	0	ID=cds-fusA2;Parent=gene-fusA2;Note=Possible pseudogene of M. tuberculosis orthologue fusA2 (Best blastx score 254);gbkey=CDS;gene=fusA2;product=elongation factor G (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3185860	3187506	.	-	.	ID=gene-ML2661;Name=ML2661;gbkey=Gene;gene=ML2661;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3185860	3187506	.	-	0	ID=cds-CAC32193.1;Parent=gene-ML2661;Dbxref=GOA:Q9CCY8,InterPro:IPR000873,InterPro:IPR020845,InterPro:IPR025110,UniProtKB/TrEMBL:Q9CCY8,NCBI_GP:CAC32193.1;Name=CAC32193.1;Note=Similar to many Prokaryotic and Eukaryotic acyl-CoA synthases including: Mycobacterium tuberculosis fadd7 protein TR:O07169 (EMBL:Z96071) fasta scores: E(): 0%2C 71.3%25 in 520 aa%2C and to Saccharomyces cerevisiae peroxisomal-coenzyme a synthetase SW:FAT2_YEAST (P38137) fasta scores: E(): 0%2C 35.6%25 in 526 aa. Contains Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme. Contains PS00455 Putative AMP-binding domain signature.;gbkey=CDS;gene=ML2661;product=acyl-CoA synthase;protein_id=CAC32193.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3186082	3187341	.	-	.	ID=id-ML2661;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score 73.10%2C E-value 1.7e-19;gbkey=misc_feature;gene=ML2661
AL450380.1	EMBL	sequence_feature	3186889	3186924	.	-	.	ID=id-ML2661-2;Note=PS00455 Putative AMP-binding domain signature;gbkey=misc_feature;gene=ML2661
AL450380.1	EMBL	pseudogene	3187860	3189295	.	+	.	ID=gene-oxcA;Name=oxcA;gbkey=Gene;gene=oxcA;gene_biotype=pseudogene;gene_synonym=ML2662;pseudo=true
AL450380.1	EMBL	CDS	3187860	3189295	.	+	0	ID=cds-oxcA;Parent=gene-oxcA;Note=Possible pseudogene of M. tuberculosis orthologue oxcA (Best blastx score 220);gbkey=CDS;gene=oxcA;product=oxalyl-CoA decarboxylase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3189375	3190307	.	-	.	ID=gene-oxyS;Name=oxyS;gbkey=Gene;gene=oxyS;gene_biotype=protein_coding;gene_synonym=ML2663
AL450380.1	EMBL	CDS	3189375	3190307	.	-	0	ID=cds-CAC32195.1;Parent=gene-oxyS;Dbxref=GOA:Q7APS6,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q7APS6,NCBI_GP:CAC32195.1;Name=CAC32195.1;Note=Similar to Mycobacterium tuberculosis OxyS protein TR:O33175 (EMBL:AJ000188) fasta scores: E(): 0%2C 81.5%25 in 314 aa%2C and to Streptomyces coelicolor A3 OxyR a regulator of the hydroperoxide reductase system TR:Q9RN71 (EMBL:AF186371) fasta scores: E(): 5.9e-16%2C 31.2%25 in 292 aa. Contains a probable helix-turn-helix motif at aa 16-37 (Score 1517%2C SD +4.35) Contains Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family. Contains PS00044 Bacterial regulatory proteins.;gbkey=CDS;gene=oxyS;product=probable LysR family transcriptional regulator;protein_id=CAC32195.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3189873	3190301	.	-	.	ID=id-oxyS;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 142.20%2C E-value 8.9e-39;gbkey=misc_feature;gene=oxyS
AL450380.1	EMBL	sequence_feature	3190167	3190259	.	-	.	ID=id-oxyS-2;Note=PS00044 Bacterial regulatory proteins;gbkey=misc_feature;gene=oxyS
AL450380.1	EMBL	ribosome_entry_site	3190312	3190318	.	-	.	ID=id-AL450380.1:3190312..3190318;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	3190775	3191530	.	+	.	ID=gene-ML2664;Name=ML2664;gbkey=Gene;gene=ML2664;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3190775	3191530	.	+	0	ID=cds-CAC32196.1;Parent=gene-ML2664;Dbxref=GOA:Q7APS5,InterPro:IPR005490,UniProtKB/TrEMBL:Q7APS5,NCBI_GP:CAC32196.1;Name=CAC32196.1;Note=Similar to Mycobacterium tuberculosis hypothetical 26.9 kda protein TR:O53638 (EMBL:AL021926) fasta scores: E(): 0%2C 76.0%25 in 250 aa%2C and to Streptomyces coelicolor putative secreted protein TR:Q9X811 (EMBL:AL049497) fasta scores: E(): 6.1e-21%2C 39.7%25 in 239 aa. Contains a possible N-terminal signal sequence and another possible membrane-spanning hydrophobic domain.;gbkey=CDS;gene=ML2664;product=possible secreted protein;protein_id=CAC32196.1;transl_table=11
AL450380.1	EMBL	pseudogene	3191584	3191904	.	+	.	ID=gene-ML2665;Name=ML2665;gbkey=Gene;gene=ML2665;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3191584	3191904	.	+	0	ID=cds-ML2665;Parent=gene-ML2665;Note=Possible pseudogene of M. tuberculosis orthologue fadD (Best blastx score 114);gbkey=CDS;gene=ML2665;product=acyl-CoA synthase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3193706	3193960	.	-	.	ID=gene-ML2666;Name=ML2666;gbkey=Gene;gene=ML2666;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3193706	3193960	.	-	0	ID=cds-CAC32198.1;Parent=gene-ML2666;Dbxref=UniProtKB/TrEMBL:Q9CCY7,NCBI_GP:CAC32198.1;Name=CAC32198.1;Note=function unknown.;gbkey=CDS;gene=ML2666;product=hypothetical protein;protein_id=CAC32198.1;transl_table=11
AL450380.1	EMBL	repeat_region	3194229	3194490	.	+	.	ID=id-AL450380.1:3194229..3194490;Note=262 bp repeat%2C 99%25 identical to region 2870010..2870271;gbkey=repeat_region
AL450380.1	EMBL	stem_loop	3194495	3194548	.	-	.	ID=id-AL450380.1:3194495..3194548;Note=54 bp palindrome;gbkey=stem_loop
AL450380.1	EMBL	gene	3194549	3196405	.	-	.	ID=gene-ML2667;Name=ML2667;gbkey=Gene;gene=ML2667;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3194549	3196405	.	-	0	ID=cds-CAC32199.1;Parent=gene-ML2667;Dbxref=GOA:Q9CCY6,InterPro:IPR001046,UniProtKB/TrEMBL:Q9CCY6,NCBI_GP:CAC32199.1;Name=CAC32199.1;Note=Similar to Pseudomonas aeruginosa manganese transport protein MntH1 SW:MNT1_PSEAE (Q9RPF3) fasta scores: E(): 6.5e-13%2C 27.4%25 in 420 aa%2C and to Deinococcus radiodurans probable manganese transport protein MntH SW:MNTH_DEIRA (Q9RTP8) fasta scores: E(): 4e-15%2C 27.2%25 in 419 aa. Contains possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2667;product=possible membrane transport protein;protein_id=CAC32199.1;transl_table=11
AL450380.1	EMBL	pseudogene	3196723	3197070	.	+	.	ID=gene-ML2668;Name=ML2668;gbkey=Gene;gene=ML2668;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3196723	3197070	.	+	0	ID=cds-ML2668;Parent=gene-ML2668;Note=Possible pseudogene of M. tuberculosis orthologue Rv1805c (Best blastx score 86);gbkey=CDS;gene=ML2668;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3197427	3197747	.	+	.	ID=gene-ML2669;Name=ML2669;gbkey=Gene;gene=ML2669;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3197427	3197747	.	+	0	ID=cds-CAC32201.1;Parent=gene-ML2669;Dbxref=UniProtKB/TrEMBL:Q7APS4,NCBI_GP:CAC32201.1;Name=CAC32201.1;Note=doubtful CDS.;gbkey=CDS;gene=ML2669;product=hypothetical protein;protein_id=CAC32201.1;transl_table=11
AL450380.1	EMBL	gene	3197961	3199961	.	-	.	ID=gene-ML2670;Name=ML2670;gbkey=Gene;gene=ML2670;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3197961	3199961	.	-	0	ID=cds-CAC32202.1;Parent=gene-ML2670;Dbxref=GOA:Q9CCY5,InterPro:IPR002656,InterPro:IPR013831,UniProtKB/TrEMBL:Q9CCY5,NCBI_GP:CAC32202.1;Name=CAC32202.1;Note=Similar to Mycobacterium tuberculosis putative acetyltransferase TR:O53633 (EMBL:AL021926) fasta scores: E(): 0%2C 78.6%25 in 681 aa. Also similar to Salmonella typhimurium OafA%2C a member of the integral membrane trans-acylases TR:P74874 (EMBL:U65941) fasta scores: E(): 7.9e-16%2C 25.2%25 in 658 aa. Contains multiple possible membrane spanning hydrophobic domains. Contains 2 Pfam matches to entry PF01757 DUF33%2C Domain of unknown function.;gbkey=CDS;gene=ML2670;product=conserved integral membrane protein;protein_id=CAC32202.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3198930	3198992	.	-	.	ID=id-ML2670;Note=Pfam match to entry PF01757 DUF33%2C Domain of unknown function%2C score 17.70%2C E-value 0.00048;gbkey=misc_feature;gene=ML2670
AL450380.1	EMBL	sequence_feature	3199443	3199841	.	-	.	ID=id-ML2670-2;Note=Pfam match to entry PF01757 DUF33%2C Domain of unknown function%2C score 55.50%2C E-value 1.1e-14;gbkey=misc_feature;gene=ML2670
AL450380.1	EMBL	gene	3204710	3209539	.	+	.	ID=gene-ML2671;Name=ML2671;gbkey=Gene;gene=ML2671;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3204710	3209539	.	+	0	ID=cds-CAC32203.1;Parent=gene-ML2671;Dbxref=GOA:O53114,InterPro:IPR001757,InterPro:IPR006068,InterPro:IPR008250,InterPro:IPR018303,InterPro:IPR023214,InterPro:IPR023298,InterPro:IPR023299,NCBI_GP:CAC32203.1;Name=CAC32203.1;Note=Similar to Mycobacterium tuberculosis probable cation-transporting ATPase I SW:CTPI_MYCTU (Q10900) fasta scores: E(): 0%2C 81.9%25 in 1573 aa%2C and the C-terminal region is similar to to Synechococcus sp cation-transporting ATPase PacL SW:ATCL_SYNP7 (P37278) fasta scores: E(): 9.3e-26%2C 29.4%25 in 958 aa. Contains 2 Pfam matches to entry PF00122 E1-E2_ATPase%2C E1-E2 ATPase. Contains PS00154 E1-E2 ATPases phosphorylation site.;gbkey=CDS;gene=ML2671;product=probable cation transport ATPase;protein_id=CAC32203.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3207098	3207904	.	+	.	ID=id-ML2671;Note=Pfam match to entry PF00122 E1-E2_ATPase%2C E1-E2 ATPase%2C score 147.40%2C E-value 2.3e-40;gbkey=misc_feature;gene=ML2671
AL450380.1	EMBL	sequence_feature	3207866	3207886	.	+	.	ID=id-ML2671-2;Note=PS00154 E1-E2 ATPases phosphorylation site;gbkey=misc_feature;gene=ML2671
AL450380.1	EMBL	sequence_feature	3208022	3209044	.	+	.	ID=id-ML2671-3;Note=Pfam match to entry PF00122 E1-E2_ATPase%2C E1-E2 ATPase%2C score 244.30%2C E-value 1.7e-69;gbkey=misc_feature;gene=ML2671
AL450380.1	EMBL	gene	3210647	3212887	.	-	.	ID=gene-icd2;Name=icd2;gbkey=Gene;gene=icd2;gene_biotype=protein_coding;gene_synonym=ML2672
AL450380.1	EMBL	CDS	3210647	3212887	.	-	0	ID=cds-CAC32204.1;Parent=gene-icd2;Dbxref=GOA:Q7APS3,InterPro:IPR004436,InterPro:IPR024084,UniProtKB/TrEMBL:Q7APS3,NCBI_GP:CAC32204.1;Name=CAC32204.1;Note=EC_number%3DEC 1.1.1.42%3B~Similar to Vibrio sp isocitrate dehydrogenase [NADP] 2 SW:IDH2_VIBA1 (P41561) fasta scores: E(): 0%2C 59.6%25 in 741 aa and to Mycobacterium tuberculosis isocitrate dehydrogenase TR:O53611 (EMBL:AL021428) fasta scores: E(): 0%2C 85.4%25 in 745 aa.;gbkey=CDS;gene=icd2;product=isocitrate dehydrogenase [NADP];protein_id=CAC32204.1;transl_table=11
AL450380.1	EMBL	pseudogene	3213362	3214591	.	+	.	ID=gene-ML2673;Name=ML2673;gbkey=Gene;gene=ML2673;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3213362	3214591	.	+	0	ID=cds-ML2673;Parent=gene-ML2673;Note=Possible pseudogene of M. tuberculosis orthologue Rv0902c (Best blastx score 369);gbkey=CDS;gene=ML2673;product=sensor histidine kinase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	sequence_feature	3214867	3215812	.	+	.	ID=id-AL450380.1:3214867..3215812;Note=Region of low G+C content 39.32%25;gbkey=misc_feature
AL450380.1	EMBL	pseudogene	3215943	3216350	.	+	.	ID=gene-ML2674;Name=ML2674;gbkey=Gene;gene=ML2674;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3215943	3216350	.	+	0	ID=cds-ML2674;Parent=gene-ML2674;Note=Possible pseudogene of M. tuberculosis orthologue Rv2563 (Best blastx score 212);gbkey=CDS;gene=ML2674;product=possible membrane protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3216461	3217077	.	+	.	ID=gene-glnQ;Name=glnQ;gbkey=Gene;gene=glnQ;gene_biotype=pseudogene;gene_synonym=ML2675;pseudo=true
AL450380.1	EMBL	CDS	3216461	3217077	.	+	0	ID=cds-glnQ;Parent=gene-glnQ;Note=Possible pseudogene of M. tuberculosis orthologue glnQ (Best blastx score 312);gbkey=CDS;gene=glnQ;product=probable ATP-binding transport protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3220860	3221594	.	-	.	ID=gene-ML2676;Name=ML2676;gbkey=Gene;gene=ML2676;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3220860	3221594	.	-	0	ID=cds-ML2676;Parent=gene-ML2676;Note=Possible pseudogene of M. tuberculosis orthologue Rv0077c (Best blastx score 201);gbkey=CDS;gene=ML2676;product=probable oxidoreductase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3221695	3222405	.	+	.	ID=gene-ML2677;Name=ML2677;gbkey=Gene;gene=ML2677;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3221695	3222405	.	+	0	ID=cds-CAC32209.1;Parent=gene-ML2677;Dbxref=GOA:Q7APS2,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR015893,UniProtKB/TrEMBL:Q7APS2,NCBI_GP:CAC32209.1;Name=CAC32209.1;Note=Similar to several putative transcriptional regulators including: Mycobacterium tuberculosis transcriptional regulator Rv0078 TR:O53623 (EMBL:AL021428) fasta scores: E(): 0%2C 71.4%25 in 175 aa%2C and Streptomyces coelicolor putative transcriptional regulatory protein TR:CAB76360 (EMBL:AL158061) fasta scores: E(): 0.048%2C 25.4%25 in 201 aa. Contains a probable helix-turn-helix motif at aa 35-56 (Score 1329%2C SD +3.71) Contains Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family.;gbkey=CDS;gene=ML2677;product=putative TetR-family transcriptional regulator;protein_id=CAC32209.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3221749	3221889	.	+	.	ID=id-ML2677;Note=Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family%2C score 52.90%2C E-value 4.3e-12;gbkey=misc_feature;gene=ML2677
AL450380.1	EMBL	gene	3222402	3225404	.	+	.	ID=gene-ML2678;Name=ML2678;gbkey=Gene;gene=ML2678;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3222402	3225404	.	+	0	ID=cds-CAC32210.1;Parent=gene-ML2678;Dbxref=InterPro:IPR013589,InterPro:IPR018667,UniProtKB/TrEMBL:Q7APS1,NCBI_GP:CAC32210.1;Name=CAC32210.1;Note=Similar to Mycobacterium tuberculosis hypothetical 124.5 kda protein cy9c4.02c TR:Q50732 (EMBL:Z77250) fasta scores: E(): 0%2C 50.3%25 in 1128 aa.;gbkey=CDS;gene=ML2678;product=conserved hypothetical protein;protein_id=CAC32210.1;transl_table=11
AL450380.1	EMBL	gene	3225401	3228082	.	+	.	ID=gene-ML2679;Name=ML2679;gbkey=Gene;gene=ML2679;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3225401	3228082	.	+	0	ID=cds-CAC32211.1;Parent=gene-ML2679;Dbxref=InterPro:IPR007296,InterPro:IPR007302,UniProtKB/TrEMBL:Q7APS0,NCBI_GP:CAC32211.1;Name=CAC32211.1;Note=Similar in parts to many proteins of undefined function e.g. Mycobacterium tuberculosis hypothetical 95.4 kda protein rv2567 SW:YP67_MYCTU (Q50654%3B Q50731) fasta scores: E(): 0%2C 75.2%25 in 883 aa.%3B~Similar to ML0605;gbkey=CDS;gene=ML2679;product=conserved hypothetical protein;protein_id=CAC32211.1;transl_table=11
AL450380.1	EMBL	gene	3230314	3232128	.	-	.	ID=gene-dnaB;Name=dnaB;gbkey=Gene;gene=dnaB;gene_biotype=protein_coding;gene_synonym=ML2680
AL450380.1	EMBL	CDS	3230314	3232128	.	-	0	ID=cds-CAC32212.1;Parent=gene-dnaB;Dbxref=GOA:P46394,InterPro:IPR003587,InterPro:IPR007692,InterPro:IPR007693,InterPro:IPR007694,InterPro:IPR016136,InterPro:IPR027417,InterPro:IPR028992,NCBI_GP:CAC32212.1;Name=CAC32212.1;Note=EC_number%3DEC 3.6.1.-%3B~Similar to Mycobacterium tuberculosis replicative DNA helicase SW:DNAB_MYCTU (P71715) fasta scores: E(): 0%2C 66.6%25 in 554 aa%2C and to Escherichia coli replicative DNA helicase SW:DNAB_ECOLI (P03005) fasta scores: E(): 5.3e-31%2C 29.6%25 in 585 aa. Note the M. leprae DnaB orthologue contains an intein (approximately between residues 274..418) which is displays no similarity to any other protein sequence within the current database. Contains a probable helix-turn-helix motif at aa 505-526 (Score 1068%2C SD +2.82) Contains Pfam match to entry PF00772 DnaB%2C DnaB-like helicase.;gbkey=CDS;gene=dnaB;product=replicative DNA helicase;protein_id=CAC32212.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3230506	3231981	.	-	.	ID=id-dnaB;Note=Pfam match to entry PF00772 DnaB%2C DnaB-like helicase%2C score 445.10%2C E-value 6.2e-130;gbkey=misc_feature;gene=dnaB
AL450380.1	EMBL	pseudogene	3232113	3232573	.	-	.	ID=gene-ML2681;Name=ML2681;gbkey=Gene;gene=ML2681;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3232113	3232573	.	-	0	ID=cds-ML2681;Parent=gene-ML2681;Note=Possible pseudogene of M. tuberculosis orthologue Rv0057 (Best blastx score 166);gbkey=CDS;gene=ML2681;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3232678	3233136	.	-	.	ID=gene-rplI;Name=rplI;gbkey=Gene;gene=rplI;gene_biotype=protein_coding;gene_synonym=ML2682
AL450380.1	EMBL	CDS	3232678	3233136	.	-	0	ID=cds-CAC32214.1;Parent=gene-rplI;Dbxref=GOA:P46385,InterPro:IPR000244,InterPro:IPR009027,InterPro:IPR020069,InterPro:IPR020070,InterPro:IPR020594,NCBI_GP:CAC32214.1;Name=CAC32214.1;Note=Similar to Mycobacterium tuberculosis 50s ribosomal protein l9 SW:RL9_MYCTU (P71713) fasta scores: E(): 0%2C 88.7%25 in 150 aa%2C and to Escherichia coli 50s ribosomal protein l9 SW:RL9_ECOLI (P02418) fasta scores: E(): 1.3e-12%2C 41.1%25 in 151 aa. Contains Pfam match to entry PF01281 Ribosomal_L9%2C Ribosomal protein L9. Contains PS00651 Ribosomal protein L9 signature.;gbkey=CDS;gene=rplI;product=50S ribosomal protein L9;protein_id=CAC32214.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3232684	3233136	.	-	.	ID=id-rplI;Note=Pfam match to entry PF01281 Ribosomal_L9%2C Ribosomal protein L9%2C score 284.10%2C E-value 1.7e-81;gbkey=misc_feature;gene=rplI
AL450380.1	EMBL	sequence_feature	3233017	3233100	.	-	.	ID=id-rplI-2;Note=PS00651 Ribosomal protein L9 signature;gbkey=misc_feature;gene=rplI
AL450380.1	EMBL	gene	3233184	3233438	.	-	.	ID=gene-rpsR;Name=rpsR;gbkey=Gene;gene=rpsR;gene_biotype=protein_coding;gene_synonym=ML2683
AL450380.1	EMBL	CDS	3233184	3233438	.	-	0	ID=cds-CAC32215.1;Parent=gene-rpsR;Dbxref=GOA:O53125,InterPro:IPR001648,InterPro:IPR018275,NCBI_GP:CAC32215.1;Name=CAC32215.1;Note=Similar to Bacillus subtilis 30s ribosomal protein s18 SW:RS18_BACSU (P21475) fasta scores: E(): 7.3e-10%2C 51.5%25 in 68 aa%2C and to Mycobacterium tuberculosis 30s ribosomal protein s18-1 SW:R18A_MYCTU (P71712) fasta scores: E(): 1.5e-30%2C 90.5%25 in 84 aa. Contains Pfam match to entry PF01084 Ribosomal_S18%2C Ribosomal protein S18. Contains PS00057 Ribosomal protein S18 signature.;gbkey=CDS;gene=rpsR;product=30S ribosomal protein S18;protein_id=CAC32215.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3233208	3233369	.	-	.	ID=id-rpsR;Note=Pfam match to entry PF01084 Ribosomal_S18%2C Ribosomal protein S18%2C score 112.80%2C E-value 6.5e-30;gbkey=misc_feature;gene=rpsR
AL450380.1	EMBL	sequence_feature	3233280	3233351	.	-	.	ID=id-rpsR-2;Note=PS00057 Ribosomal protein S18 signature;gbkey=misc_feature;gene=rpsR
AL450380.1	EMBL	gene	3233464	3233970	.	-	.	ID=gene-ssb;Name=ssb;gbkey=Gene;gene=ssb;gene_biotype=protein_coding;gene_synonym=ML2684
AL450380.1	EMBL	CDS	3233464	3233970	.	-	0	ID=cds-CAC32216.1;Parent=gene-ssb;Dbxref=GOA:P46390,InterPro:IPR000424,InterPro:IPR011344,InterPro:IPR012340,PDB:3AFP,PDB:3AFQ,NCBI_GP:CAC32216.1;Name=CAC32216.1;Note=Similar to Escherichia coli single-strand binding protein SW:SSB_ECOLI (P02339) fasta scores: E(): 1.4e-09%2C 32.6%25 in 172 aa%2C and to Mycobacterium tuberculosis single-strand binding protein SW:SSB_MYCTU (P71711) fasta scores: E(): 0%2C 89.3%25 in 168 aa. Contains Pfam match to entry PF00436 SSB%2C Single-strand binding protein family.;gbkey=CDS;gene=ssb;product=single strand binding protein;protein_id=CAC32216.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3233641	3233961	.	-	.	ID=id-ssb;Note=Pfam match to entry PF00436 SSB%2C Single-strand binding protein family%2C score 171.10%2C E-value 5.6e-50;gbkey=misc_feature;gene=ssb
AL450380.1	EMBL	ribosome_entry_site	3233976	3233980	.	-	.	ID=id-AL450380.1:3233976..3233980;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	3234130	3234420	.	-	.	ID=gene-rpsF;Name=rpsF;gbkey=Gene;gene=rpsF;gene_biotype=protein_coding;gene_synonym=ML2685
AL450380.1	EMBL	CDS	3234130	3234420	.	-	0	ID=cds-CAC32217.1;Parent=gene-rpsF;Dbxref=GOA:P46389,InterPro:IPR000529,InterPro:IPR014717,InterPro:IPR020814,InterPro:IPR020815,NCBI_GP:CAC32217.1;Name=CAC32217.1;Note=Similar to Bacillus subtilis 30s ribosomal protein S6 SW:RS6_BACSU (P21468) fasta scores: E(): 1.3e-10%2C 34.7%25 in 95 aa%2C and to Mycobacterium tuberculosis 30s ribosomal protein S6 SW:RS6_MYCTU (P71710) fasta scores: E(): 0%2C 91.7%25 in 96 aa. Contains Pfam match to entry PF01250 Ribosomal_S6%2C Ribosomal protein S6. Contains PS01048 Ribosomal protein S6 signature.;gbkey=CDS;gene=rpsF;product=30S ribosomal protein S6;protein_id=CAC32217.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3234142	3234417	.	-	.	ID=id-rpsF;Note=Pfam match to entry PF01250 Ribosomal_S6%2C Ribosomal protein S6%2C score 167.20%2C E-value 2.8e-46;gbkey=misc_feature;gene=rpsF
AL450380.1	EMBL	sequence_feature	3234262	3234291	.	-	.	ID=id-rpsF-2;Note=PS01048 Ribosomal protein S6 signature;gbkey=misc_feature;gene=rpsF
AL450380.1	EMBL	pseudogene	3234590	3234846	.	-	.	ID=gene-ML2686;Name=ML2686;gbkey=Gene;gene=ML2686;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3234590	3234846	.	-	0	ID=cds-ML2686;Parent=gene-ML2686;Note=Possible pseudogene of M. tuberculosis orthologue Rv0052 (Best blastx score 74);gbkey=CDS;gene=ML2686;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3234968	3236662	.	-	.	ID=gene-ML2687;Name=ML2687;gbkey=Gene;gene=ML2687;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3234968	3236662	.	-	0	ID=cds-CAC32219.1;Parent=gene-ML2687;Dbxref=GOA:Q7APR9,InterPro:IPR016570,InterPro:IPR018584,UniProtKB/TrEMBL:Q7APR9,NCBI_GP:CAC32219.1;Name=CAC32219.1;Note=Similar to Mycobacterium tuberculosis hypothetical 61.2 kda protein cy21d4.14 TR:P71708 (EMBL:Z80775) fasta scores: E(): 0%2C 78.7%25 in 531 aa%2C and to Streptomyces coelicolor hypothetical 44.5 kda protein TR:Q9X7Z2 (EMBL:AL049497) fasta scores: E(): 1.1e-06%2C 29.6%25 in 416 aa. Contains multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2687;product=conserved membrane protein;protein_id=CAC32219.1;transl_table=11
AL450380.1	EMBL	gene	3236659	3238785	.	-	.	ID=gene-ponA;Name=ponA;gbkey=Gene;gene=ponA;gene_biotype=protein_coding;gene_synonym=ML2688
AL450380.1	EMBL	CDS	3236659	3238785	.	-	0	ID=cds-CAC32220.1;Parent=gene-ponA;Dbxref=GOA:Q9CCY4,InterPro:IPR001264,InterPro:IPR001460,InterPro:IPR012338,InterPro:IPR023346,UniProtKB/TrEMBL:Q9CCY4,NCBI_GP:CAC32220.1;Name=CAC32220.1;Note=Similar to Mycobacterium tuberculosis probable penicillin-binding proteins 1a/1b TR:P71707 (EMBL:Z80775) fasta scores: E(): 0%2C 82.6%25 in 679 aa%2C and to Bacillus subtilis penicillin-binding proteins 1a/1b SW:PBPA_BACSU (P39793) fasta scores: E(): 3.6e-28%2C 27.0%25 in 688 aa. Contains Pfam match to entry PF00912 Transglycosyl%2C Transglycosylase. Contains Pfam match to entry PF00905 Transpeptidase%2C Penicillin binding protein transpeptidase domain.;gbkey=CDS;gene=ponA;product=penicillin-bonding protein;protein_id=CAC32220.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3236893	3237828	.	-	.	ID=id-ponA;Note=Pfam match to entry PF00905 Transpeptidase%2C Penicillin binding protein transpeptidase domain%2C score 239.00%2C E-value 6.5e-68;gbkey=misc_feature;gene=ponA
AL450380.1	EMBL	sequence_feature	3238075	3238599	.	-	.	ID=id-ponA-2;Note=Pfam match to entry PF00912 Transglycosyl%2C Transglycosylase%2C score 197.30%2C E-value 2.4e-55;gbkey=misc_feature;gene=ponA
AL450380.1	EMBL	gene	3239183	3239599	.	-	.	ID=gene-ML2689;Name=ML2689;gbkey=Gene;gene=ML2689;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3239183	3239599	.	-	0	ID=cds-CAC32221.1;Parent=gene-ML2689;Dbxref=UniProtKB/TrEMBL:Q7APR8,NCBI_GP:CAC32221.1;Name=CAC32221.1;Note=Similar to Mycobacterium tuberculosis hypothetical 15.0 kda protein Rv0049 SW:Y049_MYCTU (P71706) fasta scores: E(): 0%2C 83.2%25 in 137 aa.;gbkey=CDS;gene=ML2689;product=conserved hypothetical protein;protein_id=CAC32221.1;transl_table=11
AL450380.1	EMBL	pseudogene	3239869	3240685	.	+	.	ID=gene-ML2690;Name=ML2690;gbkey=Gene;gene=ML2690;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3239869	3240685	.	+	0	ID=cds-ML2690;Parent=gene-ML2690;Note=Possible pseudogene of M. tuberculosis orthologue Rv0048c (Best blastx score 126);gbkey=CDS;gene=ML2690;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3240798	3241340	.	+	.	ID=gene-ML2691;Name=ML2691;gbkey=Gene;gene=ML2691;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3240798	3241340	.	+	0	ID=cds-CAC32223.1;Parent=gene-ML2691;Dbxref=InterPro:IPR005149,InterPro:IPR011991,UniProtKB/TrEMBL:Q9CCY3,NCBI_GP:CAC32223.1;Name=CAC32223.1;Note=Similar to Mycobacterium tuberculosis hypothetical 20.4 kda protein cy21d4.10c precursor TR:P71704 (EMBL:Z80775) fasta scores: E(): 0%2C 89.4%25 in 180 aa%2C and to Streptomyces coelicolor hypothetical 25.2 kda protein TR:Q9X8T6 (EMBL:AL049826) fasta scores: E(): 4.2e-32%2C 51.9%25 in 181 aa. Contains a possible coiled-coil region between residues 120..140.;gbkey=CDS;gene=ML2691;product=conserved hypothetical protein;protein_id=CAC32223.1;transl_table=11
AL450380.1	EMBL	repeat_region	3241403	3242588	.	-	.	ID=id-AL450380.1:3241403..3242588;Note=1186 bp repeat%2C 100%25 identical to bases 492656..493841;gbkey=repeat_region
AL450380.1	EMBL	ribosome_entry_site	3241408	3241412	.	+	.	ID=id-AL450380.1:3241408..3241412;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	3241421	3242530	.	+	.	ID=gene-ML2692;Name=ML2692;gbkey=Gene;gene=ML2692;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3241421	3242530	.	+	0	ID=cds-CAC32224.1;Parent=gene-ML2692;Dbxref=GOA:Q57240,InterPro:IPR002587,InterPro:IPR013021,InterPro:IPR016040,InterPro:IPR017815,NCBI_GP:CAC32224.1;Name=CAC32224.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein Rv0046c TR:P71703 (EMBL:Z80775) fasta scores: E(): 0%2C 91.8%25 in 366 aa%2C and to Streptomyces coelicolor hypothetical 39.2 kda protein TR:Q9X8T5 (EMBL:AL049826) fasta scores: E(): 0%2C 76.4%25 in 351 aa. The C-terminus is also weakly similar to several myo-inositol-1-phosphate synthases e.g. Candida albicans SW:INO1_CANAL (P42800) fasta scores: E(): 0.22%2C 24.4%25 in 242 aa. Contains Pfam match to entry PF01658 Inos-1-P_synth%2C Myo-inositol-1-phosphate synthase.%3B~Identical in sequence to ML0396;gbkey=CDS;gene=ML2692;product=conserved hypothetical protein;protein_id=CAC32224.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3241463	3242521	.	+	.	ID=id-ML2692;Note=Pfam match to entry PF01658 Inos-1-P_synth%2C Myo-inositol-1-phosphate synthase%2C score 558.20%2C E-value 5.3e-164;gbkey=misc_feature;gene=ML2692
AL450380.1	EMBL	pseudogene	3242595	3243494	.	+	.	ID=gene-ML2693;Name=ML2693;gbkey=Gene;gene=ML2693;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3242595	3243494	.	+	0	ID=cds-ML2693;Parent=gene-ML2693;Note=Possible pseudogene of M. tuberculosis orthologue Rv0045c (Best blastx score 228);gbkey=CDS;gene=ML2693;product=possible dihydrolipoamide acetyltransferase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3243522	3244331	.	+	.	ID=gene-ML2694;Name=ML2694;gbkey=Gene;gene=ML2694;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3243522	3244331	.	+	0	ID=cds-ML2694;Parent=gene-ML2694;Note=Possible pseudogene of M. tuberculosis orthologue Rv0044c (Best blastx score 394);gbkey=CDS;gene=ML2694;product=possible monooxygenase (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3246219	3246674	.	+	.	ID=gene-ML2695;Name=ML2695;gbkey=Gene;gene=ML2695;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3246219	3246674	.	+	0	ID=cds-ML2695;Parent=gene-ML2695;Note=Possible pseudogene of M. tuberculosis orthologue proV (Best blastx score 96);gbkey=CDS;gene=ML2695;product=ABC transporter (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3246782	3247513	.	+	.	ID=gene-ML2696;Name=ML2696;gbkey=Gene;gene=ML2696;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3246782	3247513	.	+	0	ID=cds-CAC32228.1;Parent=gene-ML2696;Dbxref=GOA:Q9CCY2,InterPro:IPR000835,InterPro:IPR011991,UniProtKB/TrEMBL:Q9CCY2,NCBI_GP:CAC32228.1;Name=CAC32228.1;Note=Similar to Mycobacterium tuberculosis hypothetical 22.4 kda protein TR:P71699 (EMBL:Z80775) fasta scores: E(): 0%2C 77.4%25 in 190 aa%2C and weakly similar to Streptomyces coelicolor putative MarR-family transcriptional regulator TR:CAB76343 (EMBL:AL158061) fasta scores: E(): 1.9e-07%2C 32.7%25 in 147 aa. Contains Pfam match to entry PF01047 MarR%2C MarR family.;gbkey=CDS;gene=ML2696;product=putative MarR-family regulatory protein;protein_id=CAC32228.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3247133	3247444	.	+	.	ID=id-ML2696;Note=Pfam match to entry PF01047 MarR%2C MarR family%2C score 113.00%2C E-value 5.5e-30;gbkey=misc_feature;gene=ML2696
AL450380.1	EMBL	repeat_region	3247584	3248212	.	-	.	ID=id-AL450380.1:3247584..3248212;Note=Dispersed repeat%2C RLEP%2C copy 37;gbkey=repeat_region
AL450380.1	EMBL	gene	3248268	3249728	.	-	.	ID=gene-pcnA;Name=pcnA;gbkey=Gene;gene=pcnA;gene_biotype=protein_coding;gene_synonym=ML2697
AL450380.1	EMBL	CDS	3248268	3249728	.	-	0	ID=cds-CAC32229.1;Parent=gene-pcnA;Dbxref=GOA:Q9CCY1,InterPro:IPR002646,InterPro:IPR003607,InterPro:IPR006674,InterPro:IPR006675,InterPro:IPR014065,UniProtKB/TrEMBL:Q9CCY1,NCBI_GP:CAC32229.1;Name=CAC32229.1;Note=Similar to several polynucleotide polymerases (EC 2.7.7.19) including Mycobacterium tuberculosis TR:O05438 (EMBL:Z94121) fasta scores: E(): 0%2C 83.9%25 in 478 aa%2C and Bacillus subtilis poly SW:PAPS_BACSU (P42977) fasta scores: E(): 1.4e-24%2C 30.3%25 in 456 aa. Contains Pfam match to entry PF01966 HD%2C HD domain. Contains Pfam match to entry PF01743 PolyA_pol%2C Poly A polymerase family. Contains PS00018 EF-hand calcium-binding domain.;gbkey=CDS;gene=pcnA;product=pcnA;protein_id=CAC32229.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3248406	3248444	.	-	.	ID=id-pcnA;Note=PS00018 EF-hand calcium-binding domain;gbkey=misc_feature;gene=pcnA
AL450380.1	EMBL	sequence_feature	3248541	3248918	.	-	.	ID=id-pcnA-2;Note=Pfam match to entry PF01966 HD%2C HD domain%2C score 133.50%2C E-value 3.8e-36;gbkey=misc_feature;gene=pcnA
AL450380.1	EMBL	sequence_feature	3248946	3249419	.	-	.	ID=id-pcnA-3;Note=Pfam match to entry PF01743 PolyA_pol%2C Poly A polymerase family%2C score 267.00%2C E-value 2.6e-76;gbkey=misc_feature;gene=pcnA
AL450380.1	EMBL	gene	3249915	3250670	.	+	.	ID=gene-ML2698;Name=ML2698;gbkey=Gene;gene=ML2698;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3249915	3250670	.	+	0	ID=cds-CAC32230.1;Parent=gene-ML2698;Dbxref=GOA:Q7APR7,InterPro:IPR000086,InterPro:IPR015797,InterPro:IPR020084,InterPro:IPR020476,UniProtKB/TrEMBL:Q7APR7,NCBI_GP:CAC32230.1;Name=CAC32230.1;Note=Similar to Mycobacterium tuberculosis hypothetical 27.1 kda protein TR:O05437 (EMBL:Z94121) fasta scores: E(): 0%2C 78.6%25 in 248 aa. Contains Pfam match to entry PF00293 mutT%2C Bacterial mutT protein. Contains PS00893 mutT domain signature.;gbkey=CDS;gene=ML2698;product=conserved hypothetical protein;protein_id=CAC32230.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3250182	3250298	.	+	.	ID=id-ML2698;Note=Pfam match to entry PF00293 mutT%2C Bacterial mutT protein%2C score 37.90%2C E-value 2.3e-09;gbkey=misc_feature;gene=ML2698
AL450380.1	EMBL	sequence_feature	3250230	3250289	.	+	.	ID=id-ML2698-2;Note=PS00893 mutT domain signature;gbkey=misc_feature;gene=ML2698
AL450380.1	EMBL	gene	3250667	3253060	.	+	.	ID=gene-ML2699;Name=ML2699;gbkey=Gene;gene=ML2699;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3250667	3253060	.	+	0	ID=cds-CAC32231.1;Parent=gene-ML2699;Dbxref=UniProtKB/TrEMBL:Q9CCY0,NCBI_GP:CAC32231.1;Name=CAC32231.1;Note=Similar to Mycobacterium tuberculosis hypothetical 83.9 kda protein TR:O05436 (EMBL:Z94121) fasta scores: E(): 0%2C 72.4%25 in 803 aa. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=ML2699;product=putative secreted protein.;protein_id=CAC32231.1;transl_table=11
AL450380.1	EMBL	gene	3253057	3256677	.	+	.	ID=gene-ML2700;Name=ML2700;gbkey=Gene;gene=ML2700;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3253057	3256677	.	+	0	ID=cds-CAC32232.1;Parent=gene-ML2700;Dbxref=GOA:Q9CCX9,InterPro:IPR004268,InterPro:IPR011009,UniProtKB/TrEMBL:Q9CCX9,NCBI_GP:CAC32232.1;Name=CAC32232.1;Note=Similar to Mycobacterium tuberculosis hypothetical 123.6 kda protein TR:O05435 (EMBL:Z94121) fasta scores: E(): 0%2C 75.1%25 in 1182 aa. Also the N-terminus is similar to several virulence associated proteins e.g. Salmonella typhimurium virulence factor MviN SW:MVIN_SALTY (P37169) fasta scores: E(): 3e-17%2C 29.0%25 in 527 aa. Contains multiple possible membrane spanning hydrophobic domains.;gbkey=CDS;gene=ML2700;product=possible conserved membrane protein;protein_id=CAC32232.1;transl_table=11
AL450380.1	EMBL	pseudogene	3256941	3257096	.	+	.	ID=gene-sigM;Name=sigM;gbkey=Gene;gene=sigM;gene_biotype=pseudogene;gene_synonym=ML2701;pseudo=true
AL450380.1	EMBL	CDS	3256941	3257096	.	+	0	ID=cds-sigM;Parent=gene-sigM;Note=Possible pseudogene of M. tuberculosis orthologue sigM (Best blastx score 88);gbkey=CDS;gene=sigM;product=probable sigma factor%2C similar to SigE (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	pseudogene	3257497	3258086	.	+	.	ID=gene-ML2702;Name=ML2702;gbkey=Gene;gene=ML2702;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3257497	3258086	.	+	0	ID=cds-ML2702;Parent=gene-ML2702;Note=Possible pseudogene of M. tuberculosis orthologue Rv3912 (Best blastx score 80);gbkey=CDS;gene=ML2702;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	gene	3258250	3259626	.	+	.	ID=gene-trxB-2;Name=trxB;gbkey=Gene;gene=trxB;gene_biotype=protein_coding;gene_synonym=ML2703
AL450380.1	EMBL	CDS	3258250	3259626	.	+	0	ID=cds-CAC32235.1;Parent=gene-trxB-2;Dbxref=GOA:P46843,InterPro:IPR000103,InterPro:IPR001327,InterPro:IPR005746,InterPro:IPR005982,InterPro:IPR008255,InterPro:IPR012336,InterPro:IPR013027,InterPro:IPR013766,InterPro:IPR017937,InterPro:IPR023753,NCBI_GP:CAC32235.1;Name=CAC32235.1;Note=EC_number%3DEC 1.6.4.5%3B~Previously sequenced and characterised: Mycobacterium leprae bifunctional thioredoxin reductase/thioredoxin [includes: thioredoxin reductase SW:TRXB_MYCLE (P46843) fasta scores: E(): 0%2C 100.0%25 in 458 aa. Contains Pfam match to entry PF00085 thiored%2C Thioredoxin. Contains Pfam match to entry PF00070 pyr_redox%2C Pyridine nucleotide-disulphide oxidoreductase. Contains PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. Contains PS00194 Thioredoxin family active site.;gbkey=CDS;gene=trxB;product=bifunctional thioredoxin reductase/thioredoxin;protein_id=CAC32235.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3258289	3259107	.	+	.	ID=id-trxB-2;Note=Pfam match to entry PF00070 pyr_redox%2C Pyridine nucleotide-disulphide oxidoreductase%2C score 217.10%2C E-value 2.3e-63;gbkey=misc_feature;gene=trxB
AL450380.1	EMBL	sequence_feature	3258673	3258735	.	+	.	ID=id-trxB-3;Note=PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site;gbkey=misc_feature;gene=trxB
AL450380.1	EMBL	sequence_feature	3259291	3259614	.	+	.	ID=id-trxB-4;Note=Pfam match to entry PF00085 thiored%2C Thioredoxin%2C score 162.30%2C E-value 1.2e-47;gbkey=misc_feature;gene=trxB
AL450380.1	EMBL	sequence_feature	3259360	3259416	.	+	.	ID=id-trxB-5;Note=PS00194 Thioredoxin family active site;gbkey=misc_feature;gene=trxB
AL450380.1	EMBL	gene	3259759	3260979	.	+	.	ID=gene-ML2704;Name=ML2704;gbkey=Gene;gene=ML2704;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3259759	3260979	.	+	0	ID=cds-CAC32236.1;Parent=gene-ML2704;Dbxref=GOA:Q9CCX8,InterPro:IPR002477,InterPro:IPR002508,UniProtKB/TrEMBL:Q9CCX8,NCBI_GP:CAC32236.1;Name=CAC32236.1;Note=Similar to Mycobacterium tuberculosis putative hydrolase TR:O53593 (EMBL:AL021426) fasta scores: E(): 0%2C 86.9%25 in 406 aa. Contains 2 Pfam matches to entry PF01471 PG_binding_1%2C Putative peptidoglycan binding domain. Contains Pfam match to entry PF01520 Amidase_3%2C N-acetylmuramoyl-L-alanine amidase.;gbkey=CDS;gene=ML2704;product=putative hydrolase;protein_id=CAC32236.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3259807	3260019	.	+	.	ID=id-ML2704;Note=Pfam match to entry PF01471 PG_binding_1%2C Putative peptidoglycan binding domain%2C score 101.20%2C E-value 2.1e-26;gbkey=misc_feature;gene=ML2704
AL450380.1	EMBL	sequence_feature	3260068	3260250	.	+	.	ID=id-ML2704-2;Note=Pfam match to entry PF01471 PG_binding_1%2C Putative peptidoglycan binding domain%2C score 108.00%2C E-value 1.8e-28;gbkey=misc_feature;gene=ML2704
AL450380.1	EMBL	sequence_feature	3260521	3260880	.	+	.	ID=id-ML2704-3;Note=Pfam match to entry PF01520 Amidase_3%2C N-acetylmuramoyl-L-alanine amidase%2C score 138.60%2C E-value 1.1e-37;gbkey=misc_feature;gene=ML2704
AL450380.1	EMBL	gene	3260976	3261755	.	-	.	ID=gene-ML2705;Name=ML2705;gbkey=Gene;gene=ML2705;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3260976	3261755	.	-	0	ID=cds-CAC32237.1;Parent=gene-ML2705;Dbxref=UniProtKB/TrEMBL:Q7APR6,NCBI_GP:CAC32237.1;Name=CAC32237.1;Note=Similar to Mycobacterium tuberculosis hypothetical 26.6 kda protein Rv3916c TR:O53594 (EMBL:AL021426) fasta scores: E(): 0%2C 76.4%25 in 250 aa%2C and to Streptomyces coelicolor hypothetical 22.6 kda protein TR:Q9R3S2 (EMBL:AF187159) fasta scores: E(): 1e-08%2C 39.7%25 in 237 aa.;gbkey=CDS;gene=ML2705;product=conserved hypothetical protein;protein_id=CAC32237.1;transl_table=11
AL450380.1	EMBL	gene	3262108	3263115	.	-	.	ID=gene-parB;Name=parB;gbkey=Gene;gene=parB;gene_biotype=protein_coding;gene_synonym=ML2706
AL450380.1	EMBL	CDS	3262108	3263115	.	-	0	ID=cds-CAC32238.1;Parent=gene-parB;Dbxref=GOA:Q50201,InterPro:IPR003115,InterPro:IPR004437,NCBI_GP:CAC32238.1;Name=CAC32238.1;Note=Similar to many proteins thought to be involved with chromosome partitioning e.g. Mycobacterium tuberculosis hypothetical 37.0 kda protein TR:O53595 (EMBL:AL021426) fasta scores: E(): 0%2C 78.6%25 in 332 aa%2C and to Streptomyces coelicolor ParB TR:Q9RFM2 (EMBL:AF187159) fasta scores: E(): 0%2C 50.7%25 in 347 aa%2C and to Bacillus subtilis stage 0 sporulation protein J SW:SP0J_BACSU (P26497) fasta scores: E(): 1.7e-28%2C 42.3%25 in 272 aa. Contains Pfam match to entry PF02195 ParBc%2C ParB-like nuclease domain.;gbkey=CDS;gene=parB;product=putative cell division protein;protein_id=CAC32238.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3262645	3262929	.	-	.	ID=id-parB;Note=Pfam match to entry PF02195 ParBc%2C ParB-like nuclease domain%2C score 124.90%2C E-value 1.5e-33;gbkey=misc_feature;gene=parB
AL450380.1	EMBL	gene	3263112	3264167	.	-	.	ID=gene-parA;Name=parA;gbkey=Gene;gene=parA;gene_biotype=protein_coding;gene_synonym=ML2707
AL450380.1	EMBL	CDS	3263112	3264167	.	-	0	ID=cds-CAC32239.1;Parent=gene-parA;Dbxref=GOA:Q9CCX7,InterPro:IPR002586,InterPro:IPR027417,UniProtKB/TrEMBL:Q9CCX7,NCBI_GP:CAC32239.1;Name=CAC32239.1;Note=Similar to many proteins thought to be involved with chromosome partitioning e.g. Mycobacterium tuberculosis hypothetical 37.5 kda protein TR:O53596 (EMBL:AL021426) fasta scores: E(): 0%2C 78.1%25 in 347 aa%2C and to Bacillus subtilis soj protein SW:SOJ_BACSU (P37522) fasta scores: E(): 0%2C 52.6%25 in 251 aa. Contains Pfam match to entry PF00991 ParA%2C ParA family ATPase.;gbkey=CDS;gene=parA;product=putative cell division protein;protein_id=CAC32239.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3263310	3263648	.	-	.	ID=id-parA;Note=Pfam match to entry PF00991 ParA%2C ParA family ATPase%2C score 151.60%2C E-value 1.3e-41;gbkey=misc_feature;gene=parA
AL450380.1	EMBL	gene	3264164	3264910	.	-	.	ID=gene-ML2708;Name=ML2708;gbkey=Gene;gene=ML2708;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3264164	3264910	.	-	0	ID=cds-CAC32240.1;Parent=gene-ML2708;Dbxref=GOA:Q50203,InterPro:IPR003682,InterPro:IPR029063,NCBI_GP:CAC32240.1;Name=CAC32240.1;Note=Similar to Mycobacterium paratuberculosis putative glucose inhibited division protein B%2C the function of which is unclear TR:AAF33688 (EMBL:AF222789) fasta scores: E(): 0%2C 64.2%25 in 243 aa%2C and to Mycobacterium tuberculosis glucose inhibited division protein B SW:GIDB_MYCTU (O53597) fasta scores: E(): 0%2C 68.4%25 in 212 aa.;gbkey=CDS;gene=ML2708;product=conserved hypothetical protein;protein_id=CAC32240.1;transl_table=11
AL450380.1	EMBL	gene	3264982	3265563	.	-	.	ID=gene-ML2709;Name=ML2709;gbkey=Gene;gene=ML2709;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3264982	3265563	.	-	0	ID=cds-CAC32241.1;Parent=gene-ML2709;Dbxref=GOA:Q7APR5,InterPro:IPR001374,UniProtKB/TrEMBL:Q7APR5,NCBI_GP:CAC32241.1;Name=CAC32241.1;Note=Similar to Mycobacterium paratuberculosis hypothetical 20.1 kda protein TR:AAF33691 (EMBL:AF222789) fasta scores: E(): 0%2C 76.0%25 in 183 aa%2C and to Mycobacterium tuberculosis hypothetical 20.6 kda protein TR:O53598 (EMBL:AL021426) fasta scores: E(): 0%2C 73.1%25 in 193 aa. Contains Pfam match to entry PF01424 R3H%2C R3H domain.;gbkey=CDS;gene=ML2709;product=conserved hypothetical protein;protein_id=CAC32241.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3264997	3265155	.	-	.	ID=id-ML2709;Note=Pfam match to entry PF01424 R3H%2C R3H domain%2C score 79.50%2C E-value 6.8e-20;gbkey=misc_feature;gene=ML2709
AL450380.1	EMBL	gene	3265645	3266787	.	-	.	ID=gene-ML2710;Name=ML2710;gbkey=Gene;gene=ML2710;gene_biotype=protein_coding
AL450380.1	EMBL	CDS	3265645	3266787	.	-	0	ID=cds-CAC32242.1;Parent=gene-ML2710;Dbxref=GOA:Q50205,InterPro:IPR001708,InterPro:IPR028055,NCBI_GP:CAC32242.1;Name=CAC32242.1;Note=Similar to Mycobacterium tuberculosis putative membrane protein Rv3921c TR:O53599 (EMBL:AL021426) fasta scores: E(): 0%2C 77.1%25 in 380 aa%2C and to Streptomyces coelicolor inner membrane protein TR:O54569 (EMBL:AF031590) fasta scores: E(): 1.8e-18%2C 29.0%25 in 366 aa. Contains multiple possible membrane spanning hydrophobic domains. Contains Pfam match to entry PF02096 60KD_IMP%2C 60Kd inner membrane protein.;gbkey=CDS;gene=ML2710;product=putative conserved membrane protein;protein_id=CAC32242.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3266416	3266580	.	-	.	ID=id-ML2710;Note=Pfam match to entry PF02096 60KD_IMP%2C 60Kd inner membrane protein%2C score 60.00%2C E-value 7e-16;gbkey=misc_feature;gene=ML2710
AL450380.1	EMBL	pseudogene	3266780	3267100	.	-	.	ID=gene-ML2711;Name=ML2711;gbkey=Gene;gene=ML2711;gene_biotype=pseudogene;pseudo=true
AL450380.1	EMBL	CDS	3266780	3267100	.	-	0	ID=cds-ML2711;Parent=gene-ML2711;Note=Possible pseudogene of M. tuberculosis orthologue Rv3922c (Best blastx score 369);gbkey=CDS;gene=ML2711;product=possible hemolysin (pseudogene);pseudo=true;transl_table=11
AL450380.1	EMBL	ribosome_entry_site	3266791	3266795	.	-	.	ID=id-ML2711;Parent=gene-ML2711;gbkey=regulatory;gene=ML2711;pseudo=true;regulatory_class=ribosome_binding_site
AL450380.1	EMBL	gene	3267126	3267488	.	-	.	ID=gene-rnpA;Name=rnpA;gbkey=Gene;gene=rnpA;gene_biotype=protein_coding;gene_synonym=ML2712
AL450380.1	EMBL	CDS	3267126	3267488	.	-	0	ID=cds-CAC32244.1;Parent=gene-rnpA;Dbxref=GOA:P46610,InterPro:IPR000100,InterPro:IPR014721,InterPro:IPR020539,InterPro:IPR020568,NCBI_GP:CAC32244.1;Name=CAC32244.1;Note=EC_number%3DEC 3.1.26.5%3B~Similar to Mycobacterium tuberculosis ribonuclease P protein component SW:RNPA_MYCTU (Q50789%3B O53601) fasta scores: E(): 2.9e-26%2C 63.0%25 in 119 aa%2C and to Streptomyces bikiniensis ribonuclease P protein component SW:RNPA_STRBI (P25817) fasta scores: E(): 1.1e-08%2C 34.8%25 in 115 aa. Contains Pfam match to entry PF00825 Ribonuclease_P%2C Ribonuclease P. Contains PS00648 Bacterial ribonuclease P protein component signature.;gbkey=CDS;gene=rnpA;product=ribonuclease P protein component;protein_id=CAC32244.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3267150	3267485	.	-	.	ID=id-rnpA;Note=Pfam match to entry PF00825 Ribonuclease_P%2C Ribonuclease P%2C score 164.00%2C E-value 2.5e-45;gbkey=misc_feature;gene=rnpA
AL450380.1	EMBL	sequence_feature	3267282	3267326	.	-	.	ID=id-rnpA-2;Note=PS00648 Bacterial ribonuclease P protein component signature;gbkey=misc_feature;gene=rnpA
AL450380.1	EMBL	gene	3267510	3267653	.	-	.	ID=gene-rpmH;Name=rpmH;gbkey=Gene;gene=rpmH;gene_biotype=protein_coding;gene_synonym=ML2713
AL450380.1	EMBL	CDS	3267510	3267653	.	-	0	ID=cds-CAC32245.1;Parent=gene-rpmH;Dbxref=GOA:P46386,InterPro:IPR000271,InterPro:IPR020939,NCBI_GP:CAC32245.1;Name=CAC32245.1;Note=Highly similar to many 50s ribosomal proteins (L34) e.g. Mycobacterium avium SW:RL34_MYCAV (Q9ZB91) (46 aa)%3B Fasta score E(): 1.4e-15%2C 83.0%25 identity in 47 aa overlap and Mycobacterium tuberculosus SW:RL34_MYCTU (P52829) (47 aa)%3B Fasta score E(): 2.1e-18%2C 91.5%25 identity in 47 aa overlap. Contains Pfam match to entry PF00468 Ribosomal_L34%2C Ribosomal protein L34. Contains PS00784 Ribosomal protein L34 signature.;gbkey=CDS;gene=rpmH;product=50S ribosomal protein L34;protein_id=CAC32245.1;transl_table=11
AL450380.1	EMBL	sequence_feature	3267513	3267644	.	-	.	ID=id-rpmH;Note=Pfam match to entry PF00468 Ribosomal_L34%2C Ribosomal protein L34%2C score 75.00%2C E-value 1.3e-20;gbkey=misc_feature;gene=rpmH
AL450380.1	EMBL	sequence_feature	3267582	3267641	.	-	.	ID=id-rpmH-2;Note=PS00784 Ribosomal protein L34 signature;gbkey=misc_feature;gene=rpmH
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