##gff-version 3
#!gff-spec-version 1.21
#!processor NCBI annotwriter
#!genome-build ASM165349v1
#!genome-build-accession NCBI_Assembly:GCA_001653495.1
#!annotation-date 05/26/2016 12:21:00
#!annotation-source NCBI 
##sequence-region LYPH01000001.1 1 248525
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000001.1	Genbank	region	1	248525	.	+	.	ID=LYPH01000001.1:1..248525;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000001.1	Genbank	gene	1046	1468	.	-	.	ID=gene-A8144_00005;Name=A8144_00005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00005
LYPH01000001.1	GeneMarkS+	CDS	1046	1468	.	-	0	ID=cds-OAR21654.1;Parent=gene-A8144_00005;Dbxref=NCBI_GP:OAR21654.1;Name=OAR21654.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00005;product=hypothetical protein;protein_id=OAR21654.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	1824	2924	.	-	.	ID=gene-A8144_00010;Name=A8144_00010;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00010;pseudo=true
LYPH01000001.1	Protein Homology	CDS	1824	2924	.	-	0	ID=cds-A8144_00010;Parent=gene-A8144_00010;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003921071.1;locus_tag=A8144_00010;product=acyl-CoA dehydrogenase;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	3322	3528	.	+	.	ID=gene-A8144_00015;Name=A8144_00015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00015
LYPH01000001.1	GeneMarkS+	CDS	3322	3528	.	+	0	ID=cds-OAR21655.1;Parent=gene-A8144_00015;Dbxref=NCBI_GP:OAR21655.1;Name=OAR21655.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00015;product=hypothetical protein;protein_id=OAR21655.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	4498	5136	.	+	.	ID=gene-A8144_00020;Name=A8144_00020;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00020;pseudo=true
LYPH01000001.1	Protein Homology	CDS	4498	5136	.	+	0	ID=cds-A8144_00020;Parent=gene-A8144_00020;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003918437.1;locus_tag=A8144_00020;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	5643	5876	.	+	.	ID=gene-A8144_00025;Name=A8144_00025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00025
LYPH01000001.1	GeneMarkS+	CDS	5643	5876	.	+	0	ID=cds-OAR21656.1;Parent=gene-A8144_00025;Dbxref=NCBI_GP:OAR21656.1;Name=OAR21656.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00025;product=hypothetical protein;protein_id=OAR21656.1;transl_table=11
LYPH01000001.1	Genbank	gene	5944	6159	.	+	.	ID=gene-A8144_00030;Name=A8144_00030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00030
LYPH01000001.1	GeneMarkS+	CDS	5944	6159	.	+	0	ID=cds-OAR21657.1;Parent=gene-A8144_00030;Dbxref=NCBI_GP:OAR21657.1;Name=OAR21657.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00030;product=hypothetical protein;protein_id=OAR21657.1;transl_table=11
LYPH01000001.1	Genbank	gene	6400	7371	.	+	.	ID=gene-A8144_00035;Name=A8144_00035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00035
LYPH01000001.1	Protein Homology	CDS	6400	7371	.	+	0	ID=cds-OAR21809.1;Parent=gene-A8144_00035;Dbxref=NCBI_GP:OAR21809.1;Name=OAR21809.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009976037.1;locus_tag=A8144_00035;product=DNA polymerase III subunit delta;protein_id=OAR21809.1;transl_table=11
LYPH01000001.1	Genbank	gene	7408	7668	.	-	.	ID=gene-A8144_00040;Name=A8144_00040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00040
LYPH01000001.1	Protein Homology	CDS	7408	7668	.	-	0	ID=cds-OAR21658.1;Parent=gene-A8144_00040;Dbxref=NCBI_GP:OAR21658.1;Name=OAR21658.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019738430.1;locus_tag=A8144_00040;product=30S ribosomal protein S20;protein_id=OAR21658.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	7803	9489	.	+	.	ID=gene-A8144_00045;Name=A8144_00045;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00045;pseudo=true
LYPH01000001.1	Protein Homology	CDS	7803	9489	.	+	0	ID=cds-A8144_00045;Parent=gene-A8144_00045;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49755.2;locus_tag=A8144_00045;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	9489	10466	.	+	.	ID=gene-A8144_00050;Name=A8144_00050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00050
LYPH01000001.1	Protein Homology	CDS	9489	10466	.	+	0	ID=cds-OAR21659.1;Parent=gene-A8144_00050;Dbxref=NCBI_GP:OAR21659.1;Name=OAR21659.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907835.1;locus_tag=A8144_00050;product=hypothetical protein;protein_id=OAR21659.1;transl_table=11
LYPH01000001.1	Genbank	gene	10466	11305	.	+	.	ID=gene-A8144_00055;Name=A8144_00055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00055
LYPH01000001.1	Protein Homology	CDS	10466	11305	.	+	0	ID=cds-OAR21660.1;Parent=gene-A8144_00055;Dbxref=NCBI_GP:OAR21660.1;Name=OAR21660.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014382199.1;locus_tag=A8144_00055;product=hypothetical protein;protein_id=OAR21660.1;transl_table=11
LYPH01000001.1	Genbank	gene	11625	11966	.	+	.	ID=gene-A8144_00060;Name=A8144_00060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00060
LYPH01000001.1	GeneMarkS+	CDS	11625	11966	.	+	0	ID=cds-OAR21661.1;Parent=gene-A8144_00060;Dbxref=NCBI_GP:OAR21661.1;Name=OAR21661.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00060;product=hypothetical protein;protein_id=OAR21661.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	11981	12818	.	-	.	ID=gene-A8144_00065;Name=A8144_00065;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00065;pseudo=true
LYPH01000001.1	Protein Homology	CDS	11981	12818	.	-	0	ID=cds-A8144_00065;Parent=gene-A8144_00065;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011729929.1;locus_tag=A8144_00065;product=ribonuclease Z;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	13097	13294	.	+	.	ID=gene-A8144_00070;Name=A8144_00070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00070
LYPH01000001.1	GeneMarkS+	CDS	13097	13294	.	+	0	ID=cds-OAR21662.1;Parent=gene-A8144_00070;Dbxref=NCBI_GP:OAR21662.1;Name=OAR21662.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00070;product=hypothetical protein;protein_id=OAR21662.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	13316	13863	.	-	.	ID=gene-A8144_00075;Name=A8144_00075;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00075;pseudo=true
LYPH01000001.1	Protein Homology	CDS	13316	13863	.	-	0	ID=cds-A8144_00075;Parent=gene-A8144_00075;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007769873.1;locus_tag=A8144_00075;product=growth inhibitor PemK;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	13989	15911	.	+	.	ID=gene-A8144_00080;Name=A8144_00080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00080
LYPH01000001.1	Protein Homology	CDS	13989	15911	.	+	0	ID=cds-OAR21663.1;Parent=gene-A8144_00080;Dbxref=NCBI_GP:OAR21663.1;Name=OAR21663.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014878061.1;locus_tag=A8144_00080;product=elongation factor 4;protein_id=OAR21663.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	15969	17984	.	-	.	ID=gene-A8144_00085;Name=A8144_00085;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00085;pseudo=true
LYPH01000001.1	Protein Homology	CDS	15969	17984	.	-	0	ID=cds-A8144_00085;Parent=gene-A8144_00085;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014384192.1;locus_tag=A8144_00085;product=glycosyl hydrolase family 15;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	18477	18674	.	+	.	ID=gene-A8144_00090;Name=A8144_00090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00090
LYPH01000001.1	GeneMarkS+	CDS	18477	18674	.	+	0	ID=cds-OAR21664.1;Parent=gene-A8144_00090;Dbxref=NCBI_GP:OAR21664.1;Name=OAR21664.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00090;product=hypothetical protein;protein_id=OAR21664.1;transl_table=11
LYPH01000001.1	Genbank	gene	18706	18897	.	+	.	ID=gene-A8144_00095;Name=A8144_00095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00095
LYPH01000001.1	GeneMarkS+	CDS	18706	18897	.	+	0	ID=cds-OAR21665.1;Parent=gene-A8144_00095;Dbxref=NCBI_GP:OAR21665.1;Name=OAR21665.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00095;product=hypothetical protein;protein_id=OAR21665.1;transl_table=11
LYPH01000001.1	Genbank	gene	19032	19319	.	+	.	ID=gene-A8144_00100;Name=A8144_00100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00100
LYPH01000001.1	Protein Homology	CDS	19032	19319	.	+	0	ID=cds-OAR21666.1;Parent=gene-A8144_00100;Dbxref=NCBI_GP:OAR21666.1;Name=OAR21666.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49760.1;locus_tag=A8144_00100;product=hypothetical protein;protein_id=OAR21666.1;transl_table=11
LYPH01000001.1	Genbank	gene	19637	20683	.	+	.	ID=gene-A8144_00105;Name=A8144_00105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00105
LYPH01000001.1	Protein Homology	CDS	19637	20683	.	+	0	ID=cds-OAR21667.1;Parent=gene-A8144_00105;Dbxref=NCBI_GP:OAR21667.1;Name=OAR21667.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907839.1;locus_tag=A8144_00105;product=sulfate ABC transporter substrate-binding protein;protein_id=OAR21667.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	20770	21495	.	+	.	ID=gene-A8144_00110;Name=A8144_00110;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00110;pseudo=true
LYPH01000001.1	Protein Homology	CDS	20770	21495	.	+	0	ID=cds-A8144_00110;Parent=gene-A8144_00110;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003918432.1;locus_tag=A8144_00110;product=sulfate ABC transporter permease subunit CysT;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	pseudogene	21513	22186	.	+	.	ID=gene-A8144_00115;Name=A8144_00115;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00115;pseudo=true
LYPH01000001.1	Protein Homology	CDS	21513	22186	.	+	0	ID=cds-A8144_00115;Parent=gene-A8144_00115;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_013828450.1;locus_tag=A8144_00115;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	22262	22543	.	+	.	ID=gene-A8144_00120;Name=A8144_00120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00120
LYPH01000001.1	GeneMarkS+	CDS	22262	22543	.	+	0	ID=cds-OAR21668.1;Parent=gene-A8144_00120;Dbxref=NCBI_GP:OAR21668.1;Name=OAR21668.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00120;product=hypothetical protein;protein_id=OAR21668.1;transl_table=11
LYPH01000001.1	Genbank	gene	23296	23562	.	-	.	ID=gene-A8144_00125;Name=A8144_00125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00125
LYPH01000001.1	GeneMarkS+	CDS	23296	23562	.	-	0	ID=cds-OAR21669.1;Parent=gene-A8144_00125;Dbxref=NCBI_GP:OAR21669.1;Name=OAR21669.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00125;product=hypothetical protein;protein_id=OAR21669.1;transl_table=11
LYPH01000001.1	Genbank	gene	24787	25290	.	+	.	ID=gene-A8144_00130;Name=A8144_00130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00130
LYPH01000001.1	Protein Homology	CDS	24787	25290	.	+	0	ID=cds-OAR21670.1;Parent=gene-A8144_00130;Dbxref=NCBI_GP:OAR21670.1;Name=OAR21670.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49771.2;locus_tag=A8144_00130;product=hypothetical protein;protein_id=OAR21670.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	25336	26218	.	-	.	ID=gene-A8144_00135;Name=A8144_00135;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00135;pseudo=true
LYPH01000001.1	Protein Homology	CDS	25336	26218	.	-	0	ID=cds-A8144_00135;Parent=gene-A8144_00135;Note=frameshifted%3B too many ambiguous residues%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing start;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011741369.1;locus_tag=A8144_00135;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	26234	26539	.	-	.	ID=gene-A8144_00140;Name=A8144_00140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00140
LYPH01000001.1	GeneMarkS+	CDS	26234	26539	.	-	0	ID=cds-OAR21671.1;Parent=gene-A8144_00140;Dbxref=NCBI_GP:OAR21671.1;Name=OAR21671.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00140;product=hypothetical protein;protein_id=OAR21671.1;transl_table=11
LYPH01000001.1	Genbank	gene	28073	29104	.	+	.	ID=gene-A8144_00145;Name=A8144_00145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00145
LYPH01000001.1	Protein Homology	CDS	28073	29104	.	+	0	ID=cds-OAR21672.1;Parent=gene-A8144_00145;Dbxref=NCBI_GP:OAR21672.1;Name=OAR21672.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015631428.1;locus_tag=A8144_00145;product=heat-inducible transcriptional repressor HrcA;protein_id=OAR21672.1;transl_table=11
LYPH01000001.1	Genbank	gene	29176	30312	.	+	.	ID=gene-A8144_00150;Name=A8144_00150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00150
LYPH01000001.1	Protein Homology	CDS	29176	30312	.	+	0	ID=cds-OAR21673.1;Parent=gene-A8144_00150;Dbxref=NCBI_GP:OAR21673.1;Name=OAR21673.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007169607.1;locus_tag=A8144_00150;product=molecular chaperone DnaJ;protein_id=OAR21673.1;transl_table=11
LYPH01000001.1	Genbank	gene	30344	31117	.	+	.	ID=gene-A8144_00155;Name=A8144_00155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00155
LYPH01000001.1	Protein Homology	CDS	30344	31117	.	+	0	ID=cds-OAR21674.1;Parent=gene-A8144_00155;Dbxref=NCBI_GP:OAR21674.1;Name=OAR21674.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907843.1;locus_tag=A8144_00155;product=16S rRNA (uracil(1498)-N(3))-methyltransferase;protein_id=OAR21674.1;transl_table=11
LYPH01000001.1	Genbank	gene	31417	32466	.	+	.	ID=gene-A8144_00160;Name=A8144_00160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00160
LYPH01000001.1	Protein Homology	CDS	31417	32466	.	+	0	ID=cds-OAR21675.1;Parent=gene-A8144_00160;Dbxref=NCBI_GP:OAR21675.1;Name=OAR21675.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011724544.1;locus_tag=A8144_00160;product=phosphate starvation-inducible protein PhoH;protein_id=OAR21675.1;transl_table=11
LYPH01000001.1	Genbank	gene	32497	33033	.	+	.	ID=gene-A8144_00165;Name=A8144_00165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00165
LYPH01000001.1	Protein Homology	CDS	32497	33033	.	+	0	ID=cds-OAR21676.1;Parent=gene-A8144_00165;Dbxref=NCBI_GP:OAR21676.1;Name=OAR21676.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49752.2;locus_tag=A8144_00165;product=rRNA maturation RNase YbeY;protein_id=OAR21676.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	33030	34342	.	+	.	ID=gene-A8144_00170;Name=A8144_00170;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00170;pseudo=true
LYPH01000001.1	Protein Homology	CDS	33030	34342	.	+	0	ID=cds-A8144_00170;Parent=gene-A8144_00170;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005628521.1;locus_tag=A8144_00170;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	34335	34661	.	+	.	ID=gene-A8144_00175;Name=A8144_00175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00175
LYPH01000001.1	Protein Homology	CDS	34335	34661	.	+	0	ID=cds-OAR21677.1;Parent=gene-A8144_00175;Dbxref=NCBI_GP:OAR21677.1;Name=OAR21677.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907846.1;locus_tag=A8144_00175;product=cytidine deaminase;protein_id=OAR21677.1;transl_table=11
LYPH01000001.1	Genbank	gene	34785	35687	.	+	.	ID=gene-A8144_00180;Name=A8144_00180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00180
LYPH01000001.1	Protein Homology	CDS	34785	35687	.	+	0	ID=cds-OAR21810.1;Parent=gene-A8144_00180;Dbxref=NCBI_GP:OAR21810.1;Name=OAR21810.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009953083.1;locus_tag=A8144_00180;product=GTPase Era;protein_id=OAR21810.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	35757	37100	.	-	.	ID=gene-A8144_00185;Name=A8144_00185;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00185;pseudo=true
LYPH01000001.1	Protein Homology	CDS	35757	37100	.	-	0	ID=cds-A8144_00185;Parent=gene-A8144_00185;Note=catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia%3B frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007770279.1;locus_tag=A8144_00185;product=amidase;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	37214	38020	.	+	.	ID=gene-A8144_00190;Name=A8144_00190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00190
LYPH01000001.1	Protein Homology	CDS	37214	38020	.	+	0	ID=cds-OAR21811.1;Parent=gene-A8144_00190;Dbxref=NCBI_GP:OAR21811.1;Name=OAR21811.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q73Y16.1;locus_tag=A8144_00190;product=DNA repair protein RecO;protein_id=OAR21811.1;transl_table=11
LYPH01000001.1	Genbank	gene	38013	38903	.	+	.	ID=gene-A8144_00195;Name=A8144_00195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00195
LYPH01000001.1	Protein Homology	CDS	38013	38903	.	+	0	ID=cds-OAR21678.1;Parent=gene-A8144_00195;Dbxref=NCBI_GP:OAR21678.1;Name=OAR21678.1;Note=catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907849.1;locus_tag=A8144_00195;product=isoprenyl transferase;protein_id=OAR21678.1;transl_table=11
LYPH01000001.1	Genbank	gene	40421	42574	.	+	.	ID=gene-A8144_00200;Name=A8144_00200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00200
LYPH01000001.1	Protein Homology	CDS	40421	42574	.	+	0	ID=cds-OAR21812.1;Parent=gene-A8144_00200;Dbxref=NCBI_GP:OAR21812.1;Name=OAR21812.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907850.1;locus_tag=A8144_00200;product=ATP-dependent DNA helicase;protein_id=OAR21812.1;transl_table=11
LYPH01000001.1	Genbank	gene	42729	43031	.	+	.	ID=gene-A8144_00205;Name=A8144_00205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00205
LYPH01000001.1	Protein Homology	CDS	42729	43031	.	+	0	ID=cds-OAR21813.1;Parent=gene-A8144_00205;Dbxref=NCBI_GP:OAR21813.1;Name=OAR21813.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49769.1;locus_tag=A8144_00205;product=hypothetical protein;protein_id=OAR21813.1;transl_table=11
LYPH01000001.1	Genbank	gene	43025	43294	.	+	.	ID=gene-A8144_00210;Name=A8144_00210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00210
LYPH01000001.1	Protein Homology	CDS	43025	43294	.	+	0	ID=cds-OAR21679.1;Parent=gene-A8144_00210;Dbxref=NCBI_GP:OAR21679.1;Name=OAR21679.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907852.1;locus_tag=A8144_00210;product=transcriptional regulator;protein_id=OAR21679.1;transl_table=11
LYPH01000001.1	Genbank	gene	43371	44705	.	-	.	ID=gene-A8144_00215;Name=A8144_00215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00215
LYPH01000001.1	Protein Homology	CDS	43371	44705	.	-	0	ID=cds-OAR21814.1;Parent=gene-A8144_00215;Dbxref=NCBI_GP:OAR21814.1;Name=OAR21814.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008259631.1;locus_tag=A8144_00215;product=ABC transporter ATP-binding protein;protein_id=OAR21814.1;transl_table=11
LYPH01000001.1	Genbank	gene	45017	45214	.	-	.	ID=gene-A8144_00220;Name=A8144_00220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00220
LYPH01000001.1	GeneMarkS+	CDS	45017	45214	.	-	0	ID=cds-OAR21680.1;Parent=gene-A8144_00220;Dbxref=NCBI_GP:OAR21680.1;Name=OAR21680.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00220;product=hypothetical protein;protein_id=OAR21680.1;transl_table=11
LYPH01000001.1	Genbank	gene	45809	47248	.	-	.	ID=gene-A8144_00225;Name=A8144_00225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00225
LYPH01000001.1	Protein Homology	CDS	45809	47248	.	-	0	ID=cds-OAR21681.1;Parent=gene-A8144_00225;Dbxref=NCBI_GP:OAR21681.1;Name=OAR21681.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907854.1;locus_tag=A8144_00225;product=hydrolase;protein_id=OAR21681.1;transl_table=11
LYPH01000001.1	Genbank	gene	47311	48333	.	+	.	ID=gene-A8144_00230;Name=A8144_00230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00230
LYPH01000001.1	Protein Homology	CDS	47311	48333	.	+	0	ID=cds-OAR21682.1;Parent=gene-A8144_00230;Dbxref=NCBI_GP:OAR21682.1;Name=OAR21682.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008259626.1;locus_tag=A8144_00230;product=signal protein PDZ;protein_id=OAR21682.1;transl_table=11
LYPH01000001.1	Genbank	gene	48479	51430	.	+	.	ID=gene-A8144_00235;Name=A8144_00235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00235
LYPH01000001.1	Protein Homology	CDS	48479	51430	.	+	0	ID=cds-OAR21683.1;Parent=gene-A8144_00235;Dbxref=NCBI_GP:OAR21683.1;Name=OAR21683.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009978642.1;locus_tag=A8144_00235;product=hypothetical protein;protein_id=OAR21683.1;transl_table=11
LYPH01000001.1	Genbank	gene	51587	51663	.	+	.	ID=gene-A8144_00240;Name=A8144_00240;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_00240
LYPH01000001.1	tRNAscan-SE	tRNA	51587	51663	.	+	.	ID=rna-A8144_00240;Parent=gene-A8144_00240;anticodon=(pos:51621..51623);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_00240;product=tRNA-Met
LYPH01000001.1	tRNAscan-SE	exon	51587	51663	.	+	.	ID=exon-A8144_00240-1;Parent=rna-A8144_00240;anticodon=(pos:51621..51623);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_00240;product=tRNA-Met
LYPH01000001.1	Genbank	gene	54662	54886	.	+	.	ID=gene-A8144_00245;Name=A8144_00245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00245
LYPH01000001.1	GeneMarkS+	CDS	54662	54886	.	+	0	ID=cds-OAR21684.1;Parent=gene-A8144_00245;Dbxref=NCBI_GP:OAR21684.1;Name=OAR21684.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00245;product=hypothetical protein;protein_id=OAR21684.1;transl_table=11
LYPH01000001.1	Genbank	gene	55614	55895	.	+	.	ID=gene-A8144_00250;Name=A8144_00250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00250
LYPH01000001.1	GeneMarkS+	CDS	55614	55895	.	+	0	ID=cds-OAR21685.1;Parent=gene-A8144_00250;Dbxref=NCBI_GP:OAR21685.1;Name=OAR21685.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00250;product=hypothetical protein;protein_id=OAR21685.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	56602	57392	.	+	.	ID=gene-A8144_00255;Name=A8144_00255;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00255;pseudo=true
LYPH01000001.1	Protein Homology	CDS	56602	57392	.	+	0	ID=cds-A8144_00255;Parent=gene-A8144_00255;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014359231.1;locus_tag=A8144_00255;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	60239	60505	.	+	.	ID=gene-A8144_00260;Name=A8144_00260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00260
LYPH01000001.1	GeneMarkS+	CDS	60239	60505	.	+	0	ID=cds-OAR21686.1;Parent=gene-A8144_00260;Dbxref=NCBI_GP:OAR21686.1;Name=OAR21686.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00260;product=hypothetical protein;protein_id=OAR21686.1;transl_table=11
LYPH01000001.1	Genbank	gene	60634	61137	.	-	.	ID=gene-A8144_00265;Name=A8144_00265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00265
LYPH01000001.1	GeneMarkS+	CDS	60634	61137	.	-	0	ID=cds-OAR21687.1;Parent=gene-A8144_00265;Dbxref=NCBI_GP:OAR21687.1;Name=OAR21687.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00265;product=hypothetical protein;protein_id=OAR21687.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	61408	62312	.	+	.	ID=gene-A8144_00270;Name=A8144_00270;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00270;pseudo=true
LYPH01000001.1	Protein Homology	CDS	61408	62312	.	+	0	ID=cds-A8144_00270;Parent=gene-A8144_00270;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009952991.1;locus_tag=A8144_00270;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	pseudogene	63879	64881	.	+	.	ID=gene-A8144_00275;Name=A8144_00275;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00275;pseudo=true
LYPH01000001.1	Protein Homology	CDS	63879	64881	.	+	0	ID=cds-A8144_00275;Parent=gene-A8144_00275;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003912114.1;locus_tag=A8144_00275;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	64895	65176	.	-	.	ID=gene-A8144_00280;Name=A8144_00280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00280
LYPH01000001.1	Protein Homology	CDS	64895	65176	.	-	0	ID=cds-OAR21688.1;Parent=gene-A8144_00280;Dbxref=NCBI_GP:OAR21688.1;Name=OAR21688.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907857.1;locus_tag=A8144_00280;product=hypothetical protein;protein_id=OAR21688.1;transl_table=11
LYPH01000001.1	Genbank	gene	65448	65702	.	-	.	ID=gene-A8144_00285;Name=A8144_00285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00285
LYPH01000001.1	GeneMarkS+	CDS	65448	65702	.	-	0	ID=cds-OAR21689.1;Parent=gene-A8144_00285;Dbxref=NCBI_GP:OAR21689.1;Name=OAR21689.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00285;product=hypothetical protein;protein_id=OAR21689.1;transl_table=11
LYPH01000001.1	Genbank	gene	66445	66669	.	-	.	ID=gene-A8144_00290;Name=A8144_00290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00290
LYPH01000001.1	GeneMarkS+	CDS	66445	66669	.	-	0	ID=cds-OAR21690.1;Parent=gene-A8144_00290;Dbxref=NCBI_GP:OAR21690.1;Name=OAR21690.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00290;product=hypothetical protein;protein_id=OAR21690.1;transl_table=11
LYPH01000001.1	Genbank	gene	66840	67166	.	-	.	ID=gene-A8144_00295;Name=A8144_00295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00295
LYPH01000001.1	Protein Homology	CDS	66840	67166	.	-	0	ID=cds-OAR21691.1;Parent=gene-A8144_00295;Dbxref=NCBI_GP:OAR21691.1;Name=OAR21691.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907858.1;locus_tag=A8144_00295;product=hypothetical protein;protein_id=OAR21691.1;transl_table=11
LYPH01000001.1	Genbank	gene	67350	68552	.	-	.	ID=gene-A8144_00300;Name=A8144_00300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00300
LYPH01000001.1	Protein Homology	CDS	67350	68552	.	-	0	ID=cds-OAR21692.1;Parent=gene-A8144_00300;Dbxref=NCBI_GP:OAR21692.1;Name=OAR21692.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_016705947.1;locus_tag=A8144_00300;product=acyl-CoA dehydrogenase;protein_id=OAR21692.1;transl_table=11
LYPH01000001.1	Genbank	gene	68595	69992	.	-	.	ID=gene-A8144_00305;Name=A8144_00305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00305
LYPH01000001.1	Protein Homology	CDS	68595	69992	.	-	0	ID=cds-OAR21693.1;Parent=gene-A8144_00305;Dbxref=NCBI_GP:OAR21693.1;Name=OAR21693.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907860.1;locus_tag=A8144_00305;product=butyryl-CoA dehydrogenase;protein_id=OAR21693.1;transl_table=11
LYPH01000001.1	Genbank	gene	70069	70836	.	-	.	ID=gene-A8144_00310;Name=A8144_00310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00310
LYPH01000001.1	Protein Homology	CDS	70069	70836	.	-	0	ID=cds-OAR21694.1;Parent=gene-A8144_00310;Dbxref=NCBI_GP:OAR21694.1;Name=OAR21694.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907861.1;locus_tag=A8144_00310;product=histidinol-phosphatase;protein_id=OAR21694.1;transl_table=11
LYPH01000001.1	Genbank	gene	70964	71278	.	+	.	ID=gene-A8144_00315;Name=A8144_00315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00315
LYPH01000001.1	Protein Homology	CDS	70964	71278	.	+	0	ID=cds-OAR21695.1;Parent=gene-A8144_00315;Dbxref=NCBI_GP:OAR21695.1;Name=OAR21695.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907862.1;locus_tag=A8144_00315;product=hypothetical protein;protein_id=OAR21695.1;transl_table=11
LYPH01000001.1	Genbank	gene	71419	71682	.	+	.	ID=gene-A8144_00320;Name=A8144_00320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00320
LYPH01000001.1	Protein Homology	CDS	71419	71682	.	+	0	ID=cds-OAR21696.1;Parent=gene-A8144_00320;Dbxref=NCBI_GP:OAR21696.1;Name=OAR21696.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907863.1;locus_tag=A8144_00320;product=hypothetical protein;protein_id=OAR21696.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	71800	73278	.	+	.	ID=gene-A8144_00325;Name=A8144_00325;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00325;pseudo=true
LYPH01000001.1	Protein Homology	CDS	71800	73278	.	+	0	ID=cds-A8144_00325;Parent=gene-A8144_00325;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020732279.1;locus_tag=A8144_00325;product=FAD-linked oxidase;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	73279	74649	.	-	.	ID=gene-A8144_00330;Name=A8144_00330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00330
LYPH01000001.1	Protein Homology	CDS	73279	74649	.	-	0	ID=cds-OAR21697.1;Parent=gene-A8144_00330;Dbxref=NCBI_GP:OAR21697.1;Name=OAR21697.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O32886.1;locus_tag=A8144_00330;product=NADP oxidoreductase;protein_id=OAR21697.1;transl_table=11
LYPH01000001.1	Genbank	gene	74829	75953	.	+	.	ID=gene-A8144_00335;Name=A8144_00335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00335
LYPH01000001.1	Protein Homology	CDS	74829	75953	.	+	0	ID=cds-OAR21698.1;Parent=gene-A8144_00335;Dbxref=NCBI_GP:OAR21698.1;Name=OAR21698.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O32885.1;locus_tag=A8144_00335;product=peptide chain release factor 2;protein_id=OAR21698.1;transl_table=11
LYPH01000001.1	Genbank	gene	76160	76408	.	+	.	ID=gene-A8144_00340;Name=A8144_00340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00340
LYPH01000001.1	GeneMarkS+	CDS	76160	76408	.	+	0	ID=cds-OAR21699.1;Parent=gene-A8144_00340;Dbxref=NCBI_GP:OAR21699.1;Name=OAR21699.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00340;product=hypothetical protein;protein_id=OAR21699.1;transl_table=11
LYPH01000001.1	Genbank	gene	76706	76891	.	+	.	ID=gene-A8144_00345;Name=A8144_00345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00345
LYPH01000001.1	GeneMarkS+	CDS	76706	76891	.	+	0	ID=cds-OAR21700.1;Parent=gene-A8144_00345;Dbxref=NCBI_GP:OAR21700.1;Name=OAR21700.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00345;product=hypothetical protein;protein_id=OAR21700.1;transl_table=11
LYPH01000001.1	Genbank	gene	77223	77912	.	+	.	ID=gene-A8144_00350;Name=A8144_00350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00350
LYPH01000001.1	Protein Homology	CDS	77223	77912	.	+	0	ID=cds-OAR21815.1;Parent=gene-A8144_00350;Dbxref=NCBI_GP:OAR21815.1;Name=OAR21815.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007772842.1;locus_tag=A8144_00350;product=cell division ATP-binding protein FtsE;protein_id=OAR21815.1;transl_table=11
LYPH01000001.1	Genbank	gene	77913	78806	.	+	.	ID=gene-A8144_00355;Name=A8144_00355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00355
LYPH01000001.1	Protein Homology	CDS	77913	78806	.	+	0	ID=cds-OAR21701.1;Parent=gene-A8144_00355;Dbxref=NCBI_GP:OAR21701.1;Name=OAR21701.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015305564.1;locus_tag=A8144_00355;product=cell division protein FtsX;protein_id=OAR21701.1;transl_table=11
LYPH01000001.1	Genbank	gene	78809	79291	.	+	.	ID=gene-A8144_00360;Name=A8144_00360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00360
LYPH01000001.1	Protein Homology	CDS	78809	79291	.	+	0	ID=cds-OAR21702.1;Parent=gene-A8144_00360;Dbxref=NCBI_GP:OAR21702.1;Name=OAR21702.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O32881.1;locus_tag=A8144_00360;product=SsrA-binding protein;protein_id=OAR21702.1;transl_table=11
LYPH01000001.1	Genbank	gene	80358	80726	.	+	.	ID=gene-A8144_00365;Name=ssrA;gbkey=Gene;gene=ssrA;gene_biotype=tmRNA;locus_tag=A8144_00365
LYPH01000001.1	cmsearch	tmRNA	80358	80726	.	+	.	ID=rna-A8144_00365;Parent=gene-A8144_00365;Dbxref=RFAM:RF00023;gbkey=tmRNA;gene=ssrA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=A8144_00365;product=transfer-messenger RNA
LYPH01000001.1	cmsearch	exon	80358	80726	.	+	.	ID=exon-A8144_00365-1;Parent=rna-A8144_00365;Dbxref=RFAM:RF00023;gbkey=tmRNA;gene=ssrA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=A8144_00365;product=transfer-messenger RNA
LYPH01000001.1	Genbank	gene	81110	81640	.	-	.	ID=gene-A8144_00370;Name=A8144_00370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00370
LYPH01000001.1	GeneMarkS+	CDS	81110	81640	.	-	0	ID=cds-OAR21703.1;Parent=gene-A8144_00370;Dbxref=NCBI_GP:OAR21703.1;Name=OAR21703.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00370;product=hypothetical protein;protein_id=OAR21703.1;transl_table=11
LYPH01000001.1	Genbank	gene	81995	82843	.	+	.	ID=gene-A8144_00375;Name=A8144_00375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00375
LYPH01000001.1	Protein Homology	CDS	81995	82843	.	+	0	ID=cds-OAR21704.1;Parent=gene-A8144_00375;Dbxref=NCBI_GP:OAR21704.1;Name=OAR21704.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O32879.1;locus_tag=A8144_00375;product=bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase;protein_id=OAR21704.1;transl_table=11
LYPH01000001.1	Genbank	gene	82846	83121	.	+	.	ID=gene-A8144_00380;Name=A8144_00380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00380
LYPH01000001.1	Protein Homology	CDS	82846	83121	.	+	0	ID=cds-OAR21705.1;Parent=gene-A8144_00380;Dbxref=NCBI_GP:OAR21705.1;Name=OAR21705.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907870.1;locus_tag=A8144_00380;product=hypothetical protein;protein_id=OAR21705.1;transl_table=11
LYPH01000001.1	Genbank	gene	83118	83594	.	-	.	ID=gene-A8144_00385;Name=A8144_00385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00385
LYPH01000001.1	Protein Homology	CDS	83118	83594	.	-	0	ID=cds-OAR21706.1;Parent=gene-A8144_00385;Dbxref=NCBI_GP:OAR21706.1;Name=OAR21706.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907871.1;locus_tag=A8144_00385;product=hypothetical protein;protein_id=OAR21706.1;transl_table=11
LYPH01000001.1	Genbank	gene	84256	84546	.	+	.	ID=gene-A8144_00390;Name=A8144_00390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00390
LYPH01000001.1	GeneMarkS+	CDS	84256	84546	.	+	0	ID=cds-OAR21707.1;Parent=gene-A8144_00390;Dbxref=NCBI_GP:OAR21707.1;Name=OAR21707.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00390;product=hypothetical protein;protein_id=OAR21707.1;transl_table=11
LYPH01000001.1	Genbank	gene	84735	85262	.	-	.	ID=gene-A8144_00395;Name=A8144_00395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00395
LYPH01000001.1	Protein Homology	CDS	84735	85262	.	-	0	ID=cds-OAR21708.1;Parent=gene-A8144_00395;Dbxref=NCBI_GP:OAR21708.1;Name=OAR21708.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907872.1;locus_tag=A8144_00395;product=hypothetical protein;protein_id=OAR21708.1;transl_table=11
LYPH01000001.1	Genbank	gene	85448	85675	.	+	.	ID=gene-A8144_00400;Name=A8144_00400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00400
LYPH01000001.1	Protein Homology	CDS	85448	85675	.	+	0	ID=cds-OAR21709.1;Parent=gene-A8144_00400;Dbxref=NCBI_GP:OAR21709.1;Name=OAR21709.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907873.1;locus_tag=A8144_00400;product=hypothetical protein;protein_id=OAR21709.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	87650	88415	.	-	.	ID=gene-A8144_00405;Name=A8144_00405;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00405;pseudo=true
LYPH01000001.1	Protein Homology	CDS	87650	88415	.	-	0	ID=cds-A8144_00405;Parent=gene-A8144_00405;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011727800.1;locus_tag=A8144_00405;product=SAM-dependent methyltransferase;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	88412	89560	.	-	.	ID=gene-A8144_00410;Name=A8144_00410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00410
LYPH01000001.1	Protein Homology	CDS	88412	89560	.	-	0	ID=cds-OAR21710.1;Parent=gene-A8144_00410;Dbxref=NCBI_GP:OAR21710.1;Name=OAR21710.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O32874.1;locus_tag=A8144_00410;product=homoserine O-acetyltransferase;protein_id=OAR21710.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	89572	90848	.	-	.	ID=gene-A8144_00415;Name=A8144_00415;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00415;pseudo=true
LYPH01000001.1	Protein Homology	CDS	89572	90848	.	-	0	ID=cds-A8144_00415;Parent=gene-A8144_00415;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012879749.1;locus_tag=A8144_00415;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000001.1	cmsearch	binding_site	91006	91124	.	-	.	ID=id-LYPH01000001.1:91006..91124;Dbxref=RFAM:RF00634;Note=SAM riboswitch class IV;bound_moiety=S-adenosylmethionine;gbkey=misc_binding;inference=COORDINATES: profile:INFERNAL:1.1.1
LYPH01000001.1	Genbank	pseudogene	91274	92485	.	+	.	ID=gene-A8144_00420;Name=A8144_00420;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00420;pseudo=true
LYPH01000001.1	Protein Homology	CDS	91274	92485	.	+	0	ID=cds-A8144_00420;Parent=gene-A8144_00420;Note=Converts isocitrate to alpha ketoglutarate%3B frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007321210.1;locus_tag=A8144_00420;product=isocitrate dehydrogenase;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	92482	93393	.	-	.	ID=gene-A8144_00425;Name=A8144_00425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00425
LYPH01000001.1	Protein Homology	CDS	92482	93393	.	-	0	ID=cds-OAR21711.1;Parent=gene-A8144_00425;Dbxref=NCBI_GP:OAR21711.1;Name=OAR21711.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907875.1;locus_tag=A8144_00425;product=hydrolase;protein_id=OAR21711.1;transl_table=11
LYPH01000001.1	Genbank	gene	93429	94460	.	+	.	ID=gene-A8144_00430;Name=A8144_00430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00430
LYPH01000001.1	Protein Homology	CDS	93429	94460	.	+	0	ID=cds-OAR21712.1;Parent=gene-A8144_00430;Dbxref=NCBI_GP:OAR21712.1;Name=OAR21712.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020788453.1;locus_tag=A8144_00430;product=tryptophan--tRNA ligase;protein_id=OAR21712.1;transl_table=11
LYPH01000001.1	Genbank	gene	94472	95413	.	+	.	ID=gene-A8144_00435;Name=A8144_00435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00435
LYPH01000001.1	Protein Homology	CDS	94472	95413	.	+	0	ID=cds-OAR21713.1;Parent=gene-A8144_00435;Dbxref=NCBI_GP:OAR21713.1;Name=OAR21713.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907877.1;locus_tag=A8144_00435;product=inner membrane protein YhjD;protein_id=OAR21713.1;transl_table=11
LYPH01000001.1	Genbank	gene	96724	96951	.	-	.	ID=gene-A8144_00440;Name=A8144_00440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00440
LYPH01000001.1	GeneMarkS+	CDS	96724	96951	.	-	0	ID=cds-OAR21714.1;Parent=gene-A8144_00440;Dbxref=NCBI_GP:OAR21714.1;Name=OAR21714.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00440;product=hypothetical protein;protein_id=OAR21714.1;transl_table=11
LYPH01000001.1	Genbank	gene	97115	97357	.	-	.	ID=gene-A8144_00445;Name=A8144_00445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00445
LYPH01000001.1	GeneMarkS+	CDS	97115	97357	.	-	0	ID=cds-OAR21715.1;Parent=gene-A8144_00445;Dbxref=NCBI_GP:OAR21715.1;Name=OAR21715.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00445;product=hypothetical protein;protein_id=OAR21715.1;transl_table=11
LYPH01000001.1	Genbank	gene	97864	98085	.	+	.	ID=gene-A8144_00450;Name=A8144_00450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00450
LYPH01000001.1	GeneMarkS+	CDS	97864	98085	.	+	0	ID=cds-OAR21716.1;Parent=gene-A8144_00450;Dbxref=NCBI_GP:OAR21716.1;Name=OAR21716.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00450;product=hypothetical protein;protein_id=OAR21716.1;transl_table=11
LYPH01000001.1	Genbank	gene	98584	98826	.	-	.	ID=gene-A8144_00455;Name=A8144_00455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00455
LYPH01000001.1	GeneMarkS+	CDS	98584	98826	.	-	0	ID=cds-OAR21717.1;Parent=gene-A8144_00455;Dbxref=NCBI_GP:OAR21717.1;Name=OAR21717.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00455;product=hypothetical protein;protein_id=OAR21717.1;transl_table=11
LYPH01000001.1	Genbank	gene	99180	100415	.	-	.	ID=gene-A8144_00460;Name=A8144_00460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00460
LYPH01000001.1	Protein Homology	CDS	99180	100415	.	-	0	ID=cds-OAR21718.1;Parent=gene-A8144_00460;Dbxref=NCBI_GP:OAR21718.1;Name=OAR21718.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907878.1;locus_tag=A8144_00460;product=D-alanyl-D-alanine carboxypeptidase;protein_id=OAR21718.1;transl_table=11
LYPH01000001.1	Genbank	gene	101181	101459	.	+	.	ID=gene-A8144_00465;Name=A8144_00465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00465
LYPH01000001.1	GeneMarkS+	CDS	101181	101459	.	+	0	ID=cds-OAR21719.1;Parent=gene-A8144_00465;Dbxref=NCBI_GP:OAR21719.1;Name=OAR21719.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00465;product=hypothetical protein;protein_id=OAR21719.1;transl_table=11
LYPH01000001.1	Genbank	gene	101837	102040	.	-	.	ID=gene-A8144_00470;Name=A8144_00470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00470
LYPH01000001.1	GeneMarkS+	CDS	101837	102040	.	-	0	ID=cds-OAR21720.1;Parent=gene-A8144_00470;Dbxref=NCBI_GP:OAR21720.1;Name=OAR21720.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00470;product=hypothetical protein;protein_id=OAR21720.1;transl_table=11
LYPH01000001.1	Genbank	gene	102657	102947	.	+	.	ID=gene-A8144_00475;Name=A8144_00475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00475
LYPH01000001.1	GeneMarkS+	CDS	102657	102947	.	+	0	ID=cds-OAR21721.1;Parent=gene-A8144_00475;Dbxref=NCBI_GP:OAR21721.1;Name=OAR21721.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00475;product=hypothetical protein;protein_id=OAR21721.1;transl_table=11
LYPH01000001.1	Genbank	gene	103287	103526	.	-	.	ID=gene-A8144_00480;Name=A8144_00480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00480
LYPH01000001.1	GeneMarkS+	CDS	103287	103526	.	-	0	ID=cds-OAR21722.1;Parent=gene-A8144_00480;Dbxref=NCBI_GP:OAR21722.1;Name=OAR21722.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00480;product=hypothetical protein;protein_id=OAR21722.1;transl_table=11
LYPH01000001.1	Genbank	gene	103966	104145	.	+	.	ID=gene-A8144_00485;Name=A8144_00485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00485
LYPH01000001.1	GeneMarkS+	CDS	103966	104145	.	+	0	ID=cds-OAR21723.1;Parent=gene-A8144_00485;Dbxref=NCBI_GP:OAR21723.1;Name=OAR21723.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00485;product=hypothetical protein;protein_id=OAR21723.1;transl_table=11
LYPH01000001.1	Genbank	gene	104336	104569	.	-	.	ID=gene-A8144_00490;Name=A8144_00490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00490
LYPH01000001.1	GeneMarkS+	CDS	104336	104569	.	-	0	ID=cds-OAR21724.1;Parent=gene-A8144_00490;Dbxref=NCBI_GP:OAR21724.1;Name=OAR21724.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00490;product=hypothetical protein;protein_id=OAR21724.1;transl_table=11
LYPH01000001.1	Genbank	gene	105175	105969	.	-	.	ID=gene-A8144_00495;Name=A8144_00495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00495
LYPH01000001.1	Protein Homology	CDS	105175	105969	.	-	0	ID=cds-OAR21725.1;Parent=gene-A8144_00495;Dbxref=NCBI_GP:OAR21725.1;Name=OAR21725.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003882376.1;locus_tag=A8144_00495;product=succinate dehydrogenase iron-sulfur subunit;protein_id=OAR21725.1;transl_table=11
LYPH01000001.1	Genbank	gene	105969	107723	.	-	.	ID=gene-A8144_00500;Name=A8144_00500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00500
LYPH01000001.1	Protein Homology	CDS	105969	107723	.	-	0	ID=cds-OAR21726.1;Parent=gene-A8144_00500;Dbxref=NCBI_GP:OAR21726.1;Name=OAR21726.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907880.1;locus_tag=A8144_00500;product=succinate dehydrogenase flavoprotein subunit;protein_id=OAR21726.1;transl_table=11
LYPH01000001.1	Genbank	gene	107744	108235	.	-	.	ID=gene-A8144_00505;Name=A8144_00505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00505
LYPH01000001.1	Protein Homology	CDS	107744	108235	.	-	0	ID=cds-OAR21727.1;Parent=gene-A8144_00505;Dbxref=NCBI_GP:OAR21727.1;Name=OAR21727.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907881.1;locus_tag=A8144_00505;product=succinate dehydrogenase;protein_id=OAR21727.1;transl_table=11
LYPH01000001.1	Genbank	gene	108232	108588	.	-	.	ID=gene-A8144_00510;Name=A8144_00510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00510
LYPH01000001.1	Protein Homology	CDS	108232	108588	.	-	0	ID=cds-OAR21728.1;Parent=gene-A8144_00510;Dbxref=NCBI_GP:OAR21728.1;Name=OAR21728.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009954089.1;locus_tag=A8144_00510;product=succinate dehydrogenase%2C cytochrome b556 subunit;protein_id=OAR21728.1;transl_table=11
LYPH01000001.1	Genbank	gene	108982	110070	.	+	.	ID=gene-A8144_00515;Name=A8144_00515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00515
LYPH01000001.1	Protein Homology	CDS	108982	110070	.	+	0	ID=cds-OAR21729.1;Parent=gene-A8144_00515;Dbxref=NCBI_GP:OAR21729.1;Name=OAR21729.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014877158.1;locus_tag=A8144_00515;product=adenosine deaminase;protein_id=OAR21729.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	110131	111151	.	+	.	ID=gene-A8144_00520;Name=A8144_00520;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00520;pseudo=true
LYPH01000001.1	Protein Homology	CDS	110131	111151	.	+	0	ID=cds-A8144_00520;Parent=gene-A8144_00520;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007168009.1;locus_tag=A8144_00520;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	pseudogene	111156	112116	.	-	.	ID=gene-A8144_00525;Name=A8144_00525;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00525;pseudo=true
LYPH01000001.1	Protein Homology	CDS	111156	112116	.	-	0	ID=cds-A8144_00525;Parent=gene-A8144_00525;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009954080.1;locus_tag=A8144_00525;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	112185	113456	.	-	.	ID=gene-A8144_00530;Name=A8144_00530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00530
LYPH01000001.1	Protein Homology	CDS	112185	113456	.	-	0	ID=cds-OAR21730.1;Parent=gene-A8144_00530;Dbxref=NCBI_GP:OAR21730.1;Name=OAR21730.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907884.1;locus_tag=A8144_00530;product=primosomal protein;protein_id=OAR21730.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	114570	115137	.	+	.	ID=gene-A8144_00535;Name=A8144_00535;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00535;pseudo=true
LYPH01000001.1	Protein Homology	CDS	114570	115137	.	+	0	ID=cds-A8144_00535;Parent=gene-A8144_00535;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005114587.1;locus_tag=A8144_00535;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	115150	116754	.	-	.	ID=gene-A8144_00540;Name=A8144_00540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00540
LYPH01000001.1	Protein Homology	CDS	115150	116754	.	-	0	ID=cds-OAR21816.1;Parent=gene-A8144_00540;Dbxref=NCBI_GP:OAR21816.1;Name=OAR21816.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009954073.1;locus_tag=A8144_00540;product=phosphomannomutase;protein_id=OAR21816.1;transl_table=11
LYPH01000001.1	Genbank	gene	116763	117569	.	-	.	ID=gene-A8144_00545;Name=A8144_00545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00545
LYPH01000001.1	Protein Homology	CDS	116763	117569	.	-	0	ID=cds-OAR21731.1;Parent=gene-A8144_00545;Dbxref=NCBI_GP:OAR21731.1;Name=OAR21731.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46862.1;locus_tag=A8144_00545;product=purine-nucleoside phosphorylase;protein_id=OAR21731.1;transl_table=11
LYPH01000001.1	Genbank	gene	117640	117984	.	-	.	ID=gene-A8144_00550;Name=A8144_00550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00550
LYPH01000001.1	GeneMarkS+	CDS	117640	117984	.	-	0	ID=cds-OAR21732.1;Parent=gene-A8144_00550;Dbxref=NCBI_GP:OAR21732.1;Name=OAR21732.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00550;product=hypothetical protein;protein_id=OAR21732.1;transl_table=11
LYPH01000001.1	Genbank	gene	117983	118288	.	+	.	ID=gene-A8144_00555;Name=A8144_00555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00555
LYPH01000001.1	GeneMarkS+	CDS	117983	118288	.	+	0	ID=cds-OAR21733.1;Parent=gene-A8144_00555;Dbxref=NCBI_GP:OAR21733.1;Name=OAR21733.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00555;product=hypothetical protein;protein_id=OAR21733.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	118914	120050	.	+	.	ID=gene-A8144_00560;Name=A8144_00560;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00560;pseudo=true
LYPH01000001.1	Protein Homology	CDS	118914	120050	.	+	0	ID=cds-A8144_00560;Parent=gene-A8144_00560;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003919166.1;locus_tag=A8144_00560;product=N-acyl-L-amino acid amidohydrolase;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	pseudogene	120169	120996	.	+	.	ID=gene-A8144_00565;Name=A8144_00565;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00565;pseudo=true
LYPH01000001.1	Protein Homology	CDS	120169	120996	.	+	0	ID=cds-A8144_00565;Parent=gene-A8144_00565;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012393101.1;locus_tag=A8144_00565;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	121131	121610	.	-	.	ID=gene-A8144_00570;Name=A8144_00570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00570
LYPH01000001.1	Protein Homology	CDS	121131	121610	.	-	0	ID=cds-OAR21734.1;Parent=gene-A8144_00570;Dbxref=NCBI_GP:OAR21734.1;Name=OAR21734.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907887.1;locus_tag=A8144_00570;product=gamma-glutamylcyclotransferase;protein_id=OAR21734.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	121739	123160	.	+	.	ID=gene-A8144_00575;Name=A8144_00575;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00575;pseudo=true
LYPH01000001.1	Protein Homology	CDS	121739	123160	.	+	0	ID=cds-A8144_00575;Parent=gene-A8144_00575;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003882408.1;locus_tag=A8144_00575;product=NAD(P)H-quinone dehydrogenase;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	123251	125008	.	+	.	ID=gene-A8144_00580;Name=A8144_00580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00580
LYPH01000001.1	Protein Homology	CDS	123251	125008	.	+	0	ID=cds-OAR21735.1;Parent=gene-A8144_00580;Dbxref=NCBI_GP:OAR21735.1;Name=OAR21735.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P53435.1;locus_tag=A8144_00580;product=glycerol-3-phosphate dehydrogenase;protein_id=OAR21735.1;transl_table=11
LYPH01000001.1	Genbank	gene	125370	125612	.	+	.	ID=gene-A8144_00585;Name=A8144_00585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00585
LYPH01000001.1	GeneMarkS+	CDS	125370	125612	.	+	0	ID=cds-OAR21736.1;Parent=gene-A8144_00585;Dbxref=NCBI_GP:OAR21736.1;Name=OAR21736.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00585;product=hypothetical protein;protein_id=OAR21736.1;transl_table=11
LYPH01000001.1	Genbank	gene	126079	126993	.	+	.	ID=gene-A8144_00590;Name=A8144_00590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00590
LYPH01000001.1	Protein Homology	CDS	126079	126993	.	+	0	ID=cds-OAR21737.1;Parent=gene-A8144_00590;Dbxref=NCBI_GP:OAR21737.1;Name=OAR21737.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907889.1;locus_tag=A8144_00590;product=esterase;protein_id=OAR21737.1;transl_table=11
LYPH01000001.1	Genbank	gene	127403	127618	.	-	.	ID=gene-A8144_00595;Name=A8144_00595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00595
LYPH01000001.1	GeneMarkS+	CDS	127403	127618	.	-	0	ID=cds-OAR21738.1;Parent=gene-A8144_00595;Dbxref=NCBI_GP:OAR21738.1;Name=OAR21738.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00595;product=hypothetical protein;protein_id=OAR21738.1;transl_table=11
LYPH01000001.1	Genbank	gene	128095	128544	.	-	.	ID=gene-A8144_00600;Name=A8144_00600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00600
LYPH01000001.1	GeneMarkS+	CDS	128095	128544	.	-	0	ID=cds-OAR21739.1;Parent=gene-A8144_00600;Dbxref=NCBI_GP:OAR21739.1;Name=OAR21739.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00600;product=hypothetical protein;protein_id=OAR21739.1;transl_table=11
LYPH01000001.1	Genbank	gene	128963	129190	.	-	.	ID=gene-A8144_00605;Name=A8144_00605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00605
LYPH01000001.1	GeneMarkS+	CDS	128963	129190	.	-	0	ID=cds-OAR21740.1;Parent=gene-A8144_00605;Dbxref=NCBI_GP:OAR21740.1;Name=OAR21740.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00605;product=hypothetical protein;protein_id=OAR21740.1;transl_table=11
LYPH01000001.1	Genbank	gene	129431	129724	.	-	.	ID=gene-A8144_00610;Name=A8144_00610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00610
LYPH01000001.1	GeneMarkS+	CDS	129431	129724	.	-	0	ID=cds-OAR21741.1;Parent=gene-A8144_00610;Dbxref=NCBI_GP:OAR21741.1;Name=OAR21741.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00610;product=hypothetical protein;protein_id=OAR21741.1;transl_table=11
LYPH01000001.1	Genbank	gene	129724	130038	.	-	.	ID=gene-A8144_00615;Name=A8144_00615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00615
LYPH01000001.1	GeneMarkS+	CDS	129724	130038	.	-	0	ID=cds-OAR21742.1;Parent=gene-A8144_00615;Dbxref=NCBI_GP:OAR21742.1;Name=OAR21742.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00615;product=hypothetical protein;protein_id=OAR21742.1;transl_table=11
LYPH01000001.1	Genbank	gene	131220	131891	.	-	.	ID=gene-A8144_00620;Name=A8144_00620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00620
LYPH01000001.1	Protein Homology	CDS	131220	131891	.	-	0	ID=cds-OAR21743.1;Parent=gene-A8144_00620;Dbxref=NCBI_GP:OAR21743.1;Name=OAR21743.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907890.1;locus_tag=A8144_00620;product=TetR family transcriptional regulator;protein_id=OAR21743.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	131953	133338	.	-	.	ID=gene-A8144_00625;Name=A8144_00625;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00625;pseudo=true
LYPH01000001.1	Protein Homology	CDS	131953	133338	.	-	0	ID=cds-A8144_00625;Parent=gene-A8144_00625;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020727300.1;locus_tag=A8144_00625;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	133795	134010	.	-	.	ID=gene-A8144_00630;Name=A8144_00630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00630
LYPH01000001.1	GeneMarkS+	CDS	133795	134010	.	-	0	ID=cds-OAR21744.1;Parent=gene-A8144_00630;Dbxref=NCBI_GP:OAR21744.1;Name=OAR21744.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00630;product=hypothetical protein;protein_id=OAR21744.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	134702	135097	.	+	.	ID=gene-A8144_00635;Name=A8144_00635;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00635;pseudo=true
LYPH01000001.1	Protein Homology	CDS	134702	135097	.	+	0	ID=cds-A8144_00635;Parent=gene-A8144_00635;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008259938.1;locus_tag=A8144_00635;product=AsnC family transcriptional regulator;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	135556	135741	.	+	.	ID=gene-A8144_00640;Name=A8144_00640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00640
LYPH01000001.1	GeneMarkS+	CDS	135556	135741	.	+	0	ID=cds-OAR21745.1;Parent=gene-A8144_00640;Dbxref=NCBI_GP:OAR21745.1;Name=OAR21745.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00640;product=hypothetical protein;protein_id=OAR21745.1;transl_table=11
LYPH01000001.1	Genbank	gene	136046	136600	.	+	.	ID=gene-A8144_00645;Name=A8144_00645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00645
LYPH01000001.1	GeneMarkS+	CDS	136046	136600	.	+	0	ID=cds-OAR21746.1;Parent=gene-A8144_00645;Dbxref=NCBI_GP:OAR21746.1;Name=OAR21746.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00645;product=hypothetical protein;protein_id=OAR21746.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	136633	137009	.	+	.	ID=gene-A8144_00650;Name=A8144_00650;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00650;pseudo=true
LYPH01000001.1	Protein Homology	CDS	136633	137009	.	+	0	ID=cds-A8144_00650;Parent=gene-A8144_00650;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015294317.1;locus_tag=A8144_00650;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	pseudogene	137118	137429	.	+	.	ID=gene-A8144_00655;Name=A8144_00655;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00655;pseudo=true
LYPH01000001.1	Protein Homology	CDS	137118	137429	.	+	0	ID=cds-A8144_00655;Parent=gene-A8144_00655;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007168048.1;locus_tag=A8144_00655;product=UsfY protein;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	137894	138133	.	+	.	ID=gene-A8144_00660;Name=A8144_00660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00660
LYPH01000001.1	GeneMarkS+	CDS	137894	138133	.	+	0	ID=cds-OAR21747.1;Parent=gene-A8144_00660;Dbxref=NCBI_GP:OAR21747.1;Name=OAR21747.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00660;product=hypothetical protein;protein_id=OAR21747.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	138265	138991	.	+	.	ID=gene-A8144_00665;Name=A8144_00665;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00665;pseudo=true
LYPH01000001.1	Protein Homology	CDS	138265	138991	.	+	0	ID=cds-A8144_00665;Parent=gene-A8144_00665;Note=Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this sigma factor is a general stress response regulator%3B expressed in stationary phase and under nitrogen depletion and cold shock%3B frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007168051.1;locus_tag=A8144_00665;product=RNA polymerase subunit sigma;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	138999	140795	.	-	.	ID=gene-A8144_00670;Name=A8144_00670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00670
LYPH01000001.1	Protein Homology	CDS	138999	140795	.	-	0	ID=cds-OAR21748.1;Parent=gene-A8144_00670;Dbxref=NCBI_GP:OAR21748.1;Name=OAR21748.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015305326.1;locus_tag=A8144_00670;product=acetyl-/propionyl-CoA carboxylase subunit alpha;protein_id=OAR21748.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	140906	141320	.	-	.	ID=gene-A8144_00675;Name=A8144_00675;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00675;pseudo=true
LYPH01000001.1	Protein Homology	CDS	140906	141320	.	-	0	ID=cds-A8144_00675;Parent=gene-A8144_00675;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011558701.1;locus_tag=A8144_00675;product=cysteine desufuration protein SufE;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	141331	142221	.	-	.	ID=gene-A8144_00680;Name=A8144_00680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00680
LYPH01000001.1	Protein Homology	CDS	141331	142221	.	-	0	ID=cds-OAR21749.1;Parent=gene-A8144_00680;Dbxref=NCBI_GP:OAR21749.1;Name=OAR21749.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46700.1;locus_tag=A8144_00680;product=thiosulfate sulfurtransferase;protein_id=OAR21749.1;transl_table=11
LYPH01000001.1	Genbank	gene	142422	143063	.	-	.	ID=gene-A8144_00685;Name=A8144_00685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00685
LYPH01000001.1	Protein Homology	CDS	142422	143063	.	-	0	ID=cds-OAR21750.1;Parent=gene-A8144_00685;Dbxref=NCBI_GP:OAR21750.1;Name=OAR21750.1;Note=Maf%3B overexpression in Bacillus subtilis inhibits septation in the dividing cell;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49670.1;locus_tag=A8144_00685;product=septum formation inhibitor Maf;protein_id=OAR21750.1;transl_table=11
LYPH01000001.1	Genbank	gene	143060	143314	.	-	.	ID=gene-A8144_00690;Name=A8144_00690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00690
LYPH01000001.1	Protein Homology	CDS	143060	143314	.	-	0	ID=cds-OAR21751.1;Parent=gene-A8144_00690;Dbxref=NCBI_GP:OAR21751.1;Name=OAR21751.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907894.1;locus_tag=A8144_00690;product=hypothetical protein;protein_id=OAR21751.1;transl_table=11
LYPH01000001.1	Genbank	gene	143311	144960	.	-	.	ID=gene-A8144_00695;Name=A8144_00695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00695
LYPH01000001.1	Protein Homology	CDS	143311	144960	.	-	0	ID=cds-OAR21752.1;Parent=gene-A8144_00695;Dbxref=NCBI_GP:OAR21752.1;Name=OAR21752.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003886377.1;locus_tag=A8144_00695;product=methylmalonyl-CoA carboxyltransferase;protein_id=OAR21752.1;transl_table=11
LYPH01000001.1	Genbank	gene	145023	145847	.	+	.	ID=gene-A8144_00700;Name=A8144_00700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00700
LYPH01000001.1	Protein Homology	CDS	145023	145847	.	+	0	ID=cds-OAR21817.1;Parent=gene-A8144_00700;Dbxref=NCBI_GP:OAR21817.1;Name=OAR21817.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907896.1;locus_tag=A8144_00700;product=biotin--[acetyl-CoA-carboxylase] ligase;protein_id=OAR21817.1;transl_table=11
LYPH01000001.1	Genbank	gene	145980	146498	.	+	.	ID=gene-A8144_00705;Name=A8144_00705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00705
LYPH01000001.1	Protein Homology	CDS	145980	146498	.	+	0	ID=cds-OAR21818.1;Parent=gene-A8144_00705;Dbxref=NCBI_GP:OAR21818.1;Name=OAR21818.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003874528.1;locus_tag=A8144_00705;product=hypothetical protein;protein_id=OAR21818.1;transl_table=11
LYPH01000001.1	Genbank	gene	146453	147139	.	-	.	ID=gene-A8144_00710;Name=A8144_00710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00710
LYPH01000001.1	Protein Homology	CDS	146453	147139	.	-	0	ID=cds-OAR21753.1;Parent=gene-A8144_00710;Dbxref=NCBI_GP:OAR21753.1;Name=OAR21753.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907898.1;locus_tag=A8144_00710;product=hypothetical protein;protein_id=OAR21753.1;transl_table=11
LYPH01000001.1	Genbank	gene	147227	148546	.	+	.	ID=gene-A8144_00715;Name=A8144_00715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00715
LYPH01000001.1	Protein Homology	CDS	147227	148546	.	+	0	ID=cds-OAR21754.1;Parent=gene-A8144_00715;Dbxref=NCBI_GP:OAR21754.1;Name=OAR21754.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46701.1;locus_tag=A8144_00715;product=5-(carboxyamino)imidazole ribonucleotide synthase;protein_id=OAR21754.1;transl_table=11
LYPH01000001.1	Genbank	gene	148546	149061	.	+	.	ID=gene-A8144_00720;Name=A8144_00720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00720
LYPH01000001.1	Protein Homology	CDS	148546	149061	.	+	0	ID=cds-OAR21755.1;Parent=gene-A8144_00720;Dbxref=NCBI_GP:OAR21755.1;Name=OAR21755.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46702.1;locus_tag=A8144_00720;product=5-(carboxyamino)imidazole ribonucleotide mutase;protein_id=OAR21755.1;transl_table=11
LYPH01000001.1	Genbank	gene	149156	150325	.	+	.	ID=gene-A8144_00725;Name=A8144_00725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00725
LYPH01000001.1	Protein Homology	CDS	149156	150325	.	+	0	ID=cds-OAR21756.1;Parent=gene-A8144_00725;Dbxref=NCBI_GP:OAR21756.1;Name=OAR21756.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020732115.1;locus_tag=A8144_00725;product=acyl-CoA dehydrogenase;protein_id=OAR21756.1;transl_table=11
LYPH01000001.1	Genbank	gene	150417	150752	.	-	.	ID=gene-A8144_00730;Name=A8144_00730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00730
LYPH01000001.1	GeneMarkS+	CDS	150417	150752	.	-	0	ID=cds-OAR21757.1;Parent=gene-A8144_00730;Dbxref=NCBI_GP:OAR21757.1;Name=OAR21757.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00730;product=hypothetical protein;protein_id=OAR21757.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	150824	151842	.	-	.	ID=gene-A8144_00735;Name=A8144_00735;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00735;pseudo=true
LYPH01000001.1	Protein Homology	CDS	150824	151842	.	-	0	ID=cds-A8144_00735;Parent=gene-A8144_00735;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019734995.1;locus_tag=A8144_00735;product=phosphate ABC transporter permease subunit PstC;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	pseudogene	153646	153891	.	-	.	ID=gene-A8144_00740;Name=A8144_00740;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00740;pseudo=true
LYPH01000001.1	Protein Homology	CDS	153646	153891	.	-	0	ID=cds-A8144_00740;Parent=gene-A8144_00740;Note=internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003917376.1;locus_tag=A8144_00740;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	pseudogene	154166	155288	.	+	.	ID=gene-A8144_00745;Name=A8144_00745;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00745;pseudo=true
LYPH01000001.1	Protein Homology	CDS	154166	155288	.	+	0	ID=cds-A8144_00745;Parent=gene-A8144_00745;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020729642.1;locus_tag=A8144_00745;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	156053	156289	.	+	.	ID=gene-A8144_00750;Name=A8144_00750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00750
LYPH01000001.1	GeneMarkS+	CDS	156053	156289	.	+	0	ID=cds-OAR21758.1;Parent=gene-A8144_00750;Dbxref=NCBI_GP:OAR21758.1;Name=OAR21758.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00750;product=hypothetical protein;protein_id=OAR21758.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	157086	158308	.	-	.	ID=gene-A8144_00755;Name=A8144_00755;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00755;pseudo=true
LYPH01000001.1	Protein Homology	CDS	157086	158308	.	-	0	ID=cds-A8144_00755;Parent=gene-A8144_00755;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003901586.1;locus_tag=A8144_00755;product=acyl-CoA transferase;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	158221	158889	.	-	.	ID=gene-A8144_00760;Name=A8144_00760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00760
LYPH01000001.1	GeneMarkS+	CDS	158221	158889	.	-	0	ID=cds-OAR21759.1;Parent=gene-A8144_00760;Dbxref=NCBI_GP:OAR21759.1;Name=OAR21759.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00760;product=hypothetical protein;protein_id=OAR21759.1;transl_table=11
LYPH01000001.1	Genbank	gene	158937	159134	.	-	.	ID=gene-A8144_00765;Name=A8144_00765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00765
LYPH01000001.1	GeneMarkS+	CDS	158937	159134	.	-	0	ID=cds-OAR21760.1;Parent=gene-A8144_00765;Dbxref=NCBI_GP:OAR21760.1;Name=OAR21760.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00765;product=hypothetical protein;protein_id=OAR21760.1;transl_table=11
LYPH01000001.1	Genbank	gene	160096	162273	.	-	.	ID=gene-A8144_00770;Name=A8144_00770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00770
LYPH01000001.1	Protein Homology	CDS	160096	162273	.	-	0	ID=cds-OAR21761.1;Parent=gene-A8144_00770;Dbxref=NCBI_GP:OAR21761.1;Name=OAR21761.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012634421.1;locus_tag=A8144_00770;product=copper-translocating P-type ATPase;protein_id=OAR21761.1;transl_table=11
LYPH01000001.1	Genbank	gene	162284	162562	.	-	.	ID=gene-A8144_00775;Name=A8144_00775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00775
LYPH01000001.1	Protein Homology	CDS	162284	162562	.	-	0	ID=cds-OAR21762.1;Parent=gene-A8144_00775;Dbxref=NCBI_GP:OAR21762.1;Name=OAR21762.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907903.1;locus_tag=A8144_00775;product=hypothetical protein;protein_id=OAR21762.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	162708	163327	.	-	.	ID=gene-A8144_00780;Name=A8144_00780;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00780;pseudo=true
LYPH01000001.1	Protein Homology	CDS	162708	163327	.	-	0	ID=cds-A8144_00780;Parent=gene-A8144_00780;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009955373.1;locus_tag=A8144_00780;product=TIGR03089 family protein;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	163366	164835	.	-	.	ID=gene-A8144_00785;Name=A8144_00785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00785
LYPH01000001.1	Protein Homology	CDS	163366	164835	.	-	0	ID=cds-OAR21763.1;Parent=gene-A8144_00785;Dbxref=NCBI_GP:OAR21763.1;Name=OAR21763.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907904.1;locus_tag=A8144_00785;product=LytR family transcriptional regulator;protein_id=OAR21763.1;transl_table=11
LYPH01000001.1	Genbank	gene	164924	165859	.	+	.	ID=gene-A8144_00790;Name=A8144_00790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00790
LYPH01000001.1	Protein Homology	CDS	164924	165859	.	+	0	ID=cds-OAR21764.1;Parent=gene-A8144_00790;Dbxref=NCBI_GP:OAR21764.1;Name=OAR21764.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907905.1;locus_tag=A8144_00790;product=dTDP-4-dehydrorhamnose reductase;protein_id=OAR21764.1;transl_table=11
LYPH01000001.1	Genbank	gene	165852	166778	.	+	.	ID=gene-A8144_00795;Name=A8144_00795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00795
LYPH01000001.1	Protein Homology	CDS	165852	166778	.	+	0	ID=cds-OAR21765.1;Parent=gene-A8144_00795;Dbxref=NCBI_GP:OAR21765.1;Name=OAR21765.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907906.1;locus_tag=A8144_00795;product=N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase;protein_id=OAR21765.1;transl_table=11
LYPH01000001.1	Genbank	gene	166780	167856	.	+	.	ID=gene-A8144_00800;Name=A8144_00800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00800
LYPH01000001.1	Protein Homology	CDS	166780	167856	.	+	0	ID=cds-OAR21766.1;Parent=gene-A8144_00800;Dbxref=NCBI_GP:OAR21766.1;Name=OAR21766.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907907.1;locus_tag=A8144_00800;product=GDP-mannose pyrophosphorylase;protein_id=OAR21766.1;transl_table=11
LYPH01000001.1	Genbank	gene	168796	169056	.	-	.	ID=gene-A8144_00805;Name=A8144_00805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00805
LYPH01000001.1	Protein Homology	CDS	168796	169056	.	-	0	ID=cds-OAR21767.1;Parent=gene-A8144_00805;Dbxref=NCBI_GP:OAR21767.1;Name=OAR21767.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907908.1;locus_tag=A8144_00805;product=hypothetical protein;protein_id=OAR21767.1;transl_table=11
LYPH01000001.1	Genbank	gene	169274	170941	.	-	.	ID=gene-A8144_00810;Name=A8144_00810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00810
LYPH01000001.1	Protein Homology	CDS	169274	170941	.	-	0	ID=cds-OAR21768.1;Parent=gene-A8144_00810;Dbxref=NCBI_GP:OAR21768.1;Name=OAR21768.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907909.1;locus_tag=A8144_00810;product=lactate dehydrogenase;protein_id=OAR21768.1;transl_table=11
LYPH01000001.1	Genbank	gene	170963	171655	.	-	.	ID=gene-A8144_00815;Name=A8144_00815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00815
LYPH01000001.1	Protein Homology	CDS	170963	171655	.	-	0	ID=cds-OAR21819.1;Parent=gene-A8144_00815;Dbxref=NCBI_GP:OAR21819.1;Name=OAR21819.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907910.1;locus_tag=A8144_00815;product=hypothetical protein;protein_id=OAR21819.1;transl_table=11
LYPH01000001.1	Genbank	gene	171696	173069	.	-	.	ID=gene-A8144_00820;Name=A8144_00820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00820
LYPH01000001.1	Protein Homology	CDS	171696	173069	.	-	0	ID=cds-OAR21769.1;Parent=gene-A8144_00820;Dbxref=NCBI_GP:OAR21769.1;Name=OAR21769.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCK2.1;locus_tag=A8144_00820;product=coenzyme F420-0:L-glutamate ligase;protein_id=OAR21769.1;transl_table=11
LYPH01000001.1	Genbank	gene	173066	174067	.	-	.	ID=gene-A8144_00825;Name=A8144_00825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00825
LYPH01000001.1	Protein Homology	CDS	173066	174067	.	-	0	ID=cds-OAR21770.1;Parent=gene-A8144_00825;Dbxref=NCBI_GP:OAR21770.1;Name=OAR21770.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCK1.2;locus_tag=A8144_00825;product=2-phospho-L-lactate transferase;protein_id=OAR21770.1;transl_table=11
LYPH01000001.1	Genbank	gene	174464	174799	.	+	.	ID=gene-A8144_00830;Name=A8144_00830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00830
LYPH01000001.1	Protein Homology	CDS	174464	174799	.	+	0	ID=cds-OAR21771.1;Parent=gene-A8144_00830;Dbxref=NCBI_GP:OAR21771.1;Name=OAR21771.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007168083.1;locus_tag=A8144_00830;product=transcriptional regulator;protein_id=OAR21771.1;transl_table=11
LYPH01000001.1	Genbank	gene	174828	175247	.	-	.	ID=gene-A8144_00835;Name=A8144_00835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00835
LYPH01000001.1	Protein Homology	CDS	174828	175247	.	-	0	ID=cds-OAR21820.1;Parent=gene-A8144_00835;Dbxref=NCBI_GP:OAR21820.1;Name=OAR21820.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015305369.1;locus_tag=A8144_00835;product=exonuclease;protein_id=OAR21820.1;transl_table=11
LYPH01000001.1	Genbank	gene	175371	175868	.	+	.	ID=gene-A8144_00840;Name=A8144_00840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00840
LYPH01000001.1	Protein Homology	CDS	175371	175868	.	+	0	ID=cds-OAR21772.1;Parent=gene-A8144_00840;Dbxref=NCBI_GP:OAR21772.1;Name=OAR21772.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907915.1;locus_tag=A8144_00840;product=hypothetical protein;protein_id=OAR21772.1;transl_table=11
LYPH01000001.1	Genbank	gene	175978	177384	.	+	.	ID=gene-A8144_00845;Name=A8144_00845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00845
LYPH01000001.1	Protein Homology	CDS	175978	177384	.	+	0	ID=cds-OAR21773.1;Parent=gene-A8144_00845;Dbxref=NCBI_GP:OAR21773.1;Name=OAR21773.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907916.1;locus_tag=A8144_00845;product=phosphomannomutase/phosphoglucomutase;protein_id=OAR21773.1;transl_table=11
LYPH01000001.1	Genbank	gene	177381	178478	.	+	.	ID=gene-A8144_00850;Name=A8144_00850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00850
LYPH01000001.1	Protein Homology	CDS	177381	178478	.	+	0	ID=cds-OAR21774.1;Parent=gene-A8144_00850;Dbxref=NCBI_GP:OAR21774.1;Name=OAR21774.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907917.1;locus_tag=A8144_00850;product=TobH protein;protein_id=OAR21774.1;transl_table=11
LYPH01000001.1	Genbank	gene	178486	179718	.	+	.	ID=gene-A8144_00855;Name=A8144_00855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00855
LYPH01000001.1	Protein Homology	CDS	178486	179718	.	+	0	ID=cds-OAR21775.1;Parent=gene-A8144_00855;Dbxref=NCBI_GP:OAR21775.1;Name=OAR21775.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014814633.1;locus_tag=A8144_00855;product=mannose-6-phosphate isomerase%2C class I;protein_id=OAR21775.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	179741	181092	.	-	.	ID=gene-A8144_00860;Name=A8144_00860;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00860;pseudo=true
LYPH01000001.1	Protein Homology	CDS	179741	181092	.	-	0	ID=cds-A8144_00860;Parent=gene-A8144_00860;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012775813.1;locus_tag=A8144_00860;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	pseudogene	181149	182658	.	+	.	ID=gene-A8144_00865;Name=A8144_00865;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00865;pseudo=true
LYPH01000001.1	Protein Homology	CDS	181149	182658	.	+	0	ID=cds-A8144_00865;Parent=gene-A8144_00865;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014385676.1;locus_tag=A8144_00865;product=amino acid permease;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	184926	186404	.	+	.	ID=gene-A8144_00870;Name=A8144_00870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00870
LYPH01000001.1	Protein Homology	CDS	184926	186404	.	+	0	ID=cds-OAR21776.1;Parent=gene-A8144_00870;Dbxref=NCBI_GP:OAR21776.1;Name=OAR21776.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014385673.1;locus_tag=A8144_00870;product=adenosylhomocysteinase;protein_id=OAR21776.1;transl_table=11
LYPH01000001.1	Genbank	gene	186447	187079	.	+	.	ID=gene-A8144_00875;Name=A8144_00875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00875
LYPH01000001.1	Protein Homology	CDS	186447	187079	.	+	0	ID=cds-OAR21777.1;Parent=gene-A8144_00875;Dbxref=NCBI_GP:OAR21777.1;Name=OAR21777.1;Note=catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP);gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907920.1;locus_tag=A8144_00875;product=thymidylate kinase;protein_id=OAR21777.1;transl_table=11
LYPH01000001.1	Genbank	gene	187172	187858	.	+	.	ID=gene-A8144_00880;Name=A8144_00880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00880
LYPH01000001.1	Protein Homology	CDS	187172	187858	.	+	0	ID=cds-OAR21778.1;Parent=gene-A8144_00880;Dbxref=NCBI_GP:OAR21778.1;Name=OAR21778.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_018601429.1;locus_tag=A8144_00880;product=DNA-binding response regulator;protein_id=OAR21778.1;transl_table=11
LYPH01000001.1	Genbank	gene	187986	189674	.	+	.	ID=gene-A8144_00885;Name=A8144_00885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00885
LYPH01000001.1	Protein Homology	CDS	187986	189674	.	+	0	ID=cds-OAR21821.1;Parent=gene-A8144_00885;Dbxref=NCBI_GP:OAR21821.1;Name=OAR21821.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCJ1.1;locus_tag=A8144_00885;product=two-component sensor histidine kinase;protein_id=OAR21821.1;transl_table=11
LYPH01000001.1	Genbank	gene	189674	191440	.	+	.	ID=gene-A8144_00890;Name=A8144_00890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00890
LYPH01000001.1	Protein Homology	CDS	189674	191440	.	+	0	ID=cds-OAR21779.1;Parent=gene-A8144_00890;Dbxref=NCBI_GP:OAR21779.1;Name=OAR21779.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_017352010.1;locus_tag=A8144_00890;product=hypothetical protein;protein_id=OAR21779.1;transl_table=11
LYPH01000001.1	Genbank	gene	191561	191818	.	+	.	ID=gene-A8144_00895;Name=A8144_00895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00895
LYPH01000001.1	Protein Homology	CDS	191561	191818	.	+	0	ID=cds-OAR21822.1;Parent=gene-A8144_00895;Dbxref=NCBI_GP:OAR21822.1;Name=OAR21822.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907924.1;locus_tag=A8144_00895;product=hypothetical protein;protein_id=OAR21822.1;transl_table=11
LYPH01000001.1	Genbank	gene	191958	192152	.	+	.	ID=gene-A8144_00900;Name=A8144_00900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00900
LYPH01000001.1	Protein Homology	CDS	191958	192152	.	+	0	ID=cds-OAR21780.1;Parent=gene-A8144_00900;Dbxref=NCBI_GP:OAR21780.1;Name=OAR21780.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907925.1;locus_tag=A8144_00900;product=hypothetical protein;protein_id=OAR21780.1;transl_table=11
LYPH01000001.1	Genbank	gene	192256	192945	.	+	.	ID=gene-A8144_00905;Name=A8144_00905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00905
LYPH01000001.1	Protein Homology	CDS	192256	192945	.	+	0	ID=cds-OAR21781.1;Parent=gene-A8144_00905;Dbxref=NCBI_GP:OAR21781.1;Name=OAR21781.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907926.1;locus_tag=A8144_00905;product=ribosomal subunit interface protein;protein_id=OAR21781.1;transl_table=11
LYPH01000001.1	Genbank	gene	193025	195847	.	+	.	ID=gene-A8144_00910;Name=A8144_00910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00910
LYPH01000001.1	Protein Homology	CDS	193025	195847	.	+	0	ID=cds-OAR21782.1;Parent=gene-A8144_00910;Dbxref=NCBI_GP:OAR21782.1;Name=OAR21782.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014712263.1;locus_tag=A8144_00910;product=preprotein translocase subunit SecA;protein_id=OAR21782.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	195898	196614	.	+	.	ID=gene-A8144_00915;Name=A8144_00915;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00915;pseudo=true
LYPH01000001.1	Protein Homology	CDS	195898	196614	.	+	0	ID=cds-A8144_00915;Parent=gene-A8144_00915;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014001639.1;locus_tag=A8144_00915;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	196984	197466	.	+	.	ID=gene-A8144_00920;Name=A8144_00920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00920
LYPH01000001.1	Protein Homology	CDS	196984	197466	.	+	0	ID=cds-OAR21783.1;Parent=gene-A8144_00920;Dbxref=NCBI_GP:OAR21783.1;Name=OAR21783.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007168109.1;locus_tag=A8144_00920;product=potassium transporter TrkA;protein_id=OAR21783.1;transl_table=11
LYPH01000001.1	Genbank	gene	197471	198628	.	+	.	ID=gene-A8144_00925;Name=A8144_00925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00925
LYPH01000001.1	Protein Homology	CDS	197471	198628	.	+	0	ID=cds-OAR21784.1;Parent=gene-A8144_00925;Dbxref=NCBI_GP:OAR21784.1;Name=OAR21784.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907929.1;locus_tag=A8144_00925;product=potassium transporter;protein_id=OAR21784.1;transl_table=11
LYPH01000001.1	Genbank	gene	198721	199083	.	-	.	ID=gene-A8144_00930;Name=A8144_00930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00930
LYPH01000001.1	GeneMarkS+	CDS	198721	199083	.	-	0	ID=cds-OAR21785.1;Parent=gene-A8144_00930;Dbxref=NCBI_GP:OAR21785.1;Name=OAR21785.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00930;product=hypothetical protein;protein_id=OAR21785.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	199484	199969	.	+	.	ID=gene-A8144_00935;Name=A8144_00935;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00935;pseudo=true
LYPH01000001.1	Protein Homology	CDS	199484	199969	.	+	0	ID=cds-A8144_00935;Parent=gene-A8144_00935;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003904218.1;locus_tag=A8144_00935;product=diacylglycerol O-acyltransferase;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	200058	200291	.	-	.	ID=gene-A8144_00940;Name=A8144_00940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00940
LYPH01000001.1	GeneMarkS+	CDS	200058	200291	.	-	0	ID=cds-OAR21786.1;Parent=gene-A8144_00940;Dbxref=NCBI_GP:OAR21786.1;Name=OAR21786.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00940;product=hypothetical protein;protein_id=OAR21786.1;transl_table=11
LYPH01000001.1	Genbank	gene	201335	201556	.	+	.	ID=gene-A8144_00945;Name=A8144_00945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00945
LYPH01000001.1	GeneMarkS+	CDS	201335	201556	.	+	0	ID=cds-OAR21787.1;Parent=gene-A8144_00945;Dbxref=NCBI_GP:OAR21787.1;Name=OAR21787.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00945;product=hypothetical protein;protein_id=OAR21787.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	203354	204613	.	+	.	ID=gene-A8144_00950;Name=A8144_00950;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_00950;pseudo=true
LYPH01000001.1	Protein Homology	CDS	203354	204613	.	+	0	ID=cds-A8144_00950;Parent=gene-A8144_00950;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007773096.1;locus_tag=A8144_00950;product=stearoyl-CoA 9-desaturase;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	204993	205229	.	-	.	ID=gene-A8144_00955;Name=A8144_00955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00955
LYPH01000001.1	GeneMarkS+	CDS	204993	205229	.	-	0	ID=cds-OAR21788.1;Parent=gene-A8144_00955;Dbxref=NCBI_GP:OAR21788.1;Name=OAR21788.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00955;product=hypothetical protein;protein_id=OAR21788.1;transl_table=11
LYPH01000001.1	Genbank	gene	205831	206814	.	-	.	ID=gene-A8144_00960;Name=A8144_00960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00960
LYPH01000001.1	Protein Homology	CDS	205831	206814	.	-	0	ID=cds-OAR21823.1;Parent=gene-A8144_00960;Dbxref=NCBI_GP:OAR21823.1;Name=OAR21823.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907930.1;locus_tag=A8144_00960;product=ribosome small subunit-dependent GTPase A;protein_id=OAR21823.1;transl_table=11
LYPH01000001.1	Genbank	gene	206811	208103	.	-	.	ID=gene-A8144_00965;Name=A8144_00965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00965
LYPH01000001.1	Protein Homology	CDS	206811	208103	.	-	0	ID=cds-OAR21789.1;Parent=gene-A8144_00965;Dbxref=NCBI_GP:OAR21789.1;Name=OAR21789.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCI3.1;locus_tag=A8144_00965;product=3-phosphoshikimate 1-carboxyvinyltransferase;protein_id=OAR21789.1;transl_table=11
LYPH01000001.1	Genbank	gene	208150	208908	.	+	.	ID=gene-A8144_00970;Name=A8144_00970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00970
LYPH01000001.1	Protein Homology	CDS	208150	208908	.	+	0	ID=cds-OAR21790.1;Parent=gene-A8144_00970;Dbxref=NCBI_GP:OAR21790.1;Name=OAR21790.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907932.1;locus_tag=A8144_00970;product=hypothetical protein;protein_id=OAR21790.1;transl_table=11
LYPH01000001.1	Genbank	gene	210522	210725	.	-	.	ID=gene-A8144_00975;Name=A8144_00975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00975
LYPH01000001.1	GeneMarkS+	CDS	210522	210725	.	-	0	ID=cds-OAR21791.1;Parent=gene-A8144_00975;Dbxref=NCBI_GP:OAR21791.1;Name=OAR21791.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00975;product=hypothetical protein;protein_id=OAR21791.1;transl_table=11
LYPH01000001.1	Genbank	gene	212340	212726	.	+	.	ID=gene-A8144_00980;Name=A8144_00980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00980
LYPH01000001.1	GeneMarkS+	CDS	212340	212726	.	+	0	ID=cds-OAR21792.1;Parent=gene-A8144_00980;Dbxref=NCBI_GP:OAR21792.1;Name=OAR21792.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00980;product=hypothetical protein;protein_id=OAR21792.1;transl_table=11
LYPH01000001.1	Genbank	gene	213569	213745	.	+	.	ID=gene-A8144_00985;Name=A8144_00985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00985
LYPH01000001.1	Protein Homology	CDS	213569	213745	.	+	0	ID=cds-OAR21793.1;Parent=gene-A8144_00985;Dbxref=NCBI_GP:OAR21793.1;Name=OAR21793.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907933.1;locus_tag=A8144_00985;product=hypothetical protein;protein_id=OAR21793.1;transl_table=11
LYPH01000001.1	Genbank	gene	213823	214002	.	+	.	ID=gene-A8144_00990;Name=A8144_00990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00990
LYPH01000001.1	GeneMarkS+	CDS	213823	214002	.	+	0	ID=cds-OAR21794.1;Parent=gene-A8144_00990;Dbxref=NCBI_GP:OAR21794.1;Name=OAR21794.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00990;product=hypothetical protein;protein_id=OAR21794.1;transl_table=11
LYPH01000001.1	Genbank	gene	215279	215482	.	-	.	ID=gene-A8144_00995;Name=A8144_00995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_00995
LYPH01000001.1	GeneMarkS+	CDS	215279	215482	.	-	0	ID=cds-OAR21795.1;Parent=gene-A8144_00995;Dbxref=NCBI_GP:OAR21795.1;Name=OAR21795.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_00995;product=hypothetical protein;protein_id=OAR21795.1;transl_table=11
LYPH01000001.1	Genbank	gene	216036	216449	.	-	.	ID=gene-A8144_01000;Name=A8144_01000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01000
LYPH01000001.1	GeneMarkS+	CDS	216036	216449	.	-	0	ID=cds-OAR21796.1;Parent=gene-A8144_01000;Dbxref=NCBI_GP:OAR21796.1;Name=OAR21796.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01000;product=hypothetical protein;protein_id=OAR21796.1;transl_table=11
LYPH01000001.1	Genbank	gene	217828	219606	.	-	.	ID=gene-A8144_01005;Name=A8144_01005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01005
LYPH01000001.1	Protein Homology	CDS	217828	219606	.	-	0	ID=cds-OAR21797.1;Parent=gene-A8144_01005;Dbxref=NCBI_GP:OAR21797.1;Name=OAR21797.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907934.1;locus_tag=A8144_01005;product=hypothetical protein;protein_id=OAR21797.1;transl_table=11
LYPH01000001.1	Genbank	gene	220359	220766	.	-	.	ID=gene-A8144_01010;Name=A8144_01010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01010
LYPH01000001.1	Protein Homology	CDS	220359	220766	.	-	0	ID=cds-OAR21824.1;Parent=gene-A8144_01010;Dbxref=NCBI_GP:OAR21824.1;Name=OAR21824.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907935.1;locus_tag=A8144_01010;product=hypothetical protein;protein_id=OAR21824.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	220840	221643	.	-	.	ID=gene-A8144_01015;Name=A8144_01015;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01015;pseudo=true
LYPH01000001.1	Protein Homology	CDS	220840	221643	.	-	0	ID=cds-A8144_01015;Parent=gene-A8144_01015;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020727249.1;locus_tag=A8144_01015;product=short chain dehydrogenase;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	223156	223371	.	+	.	ID=gene-A8144_01020;Name=A8144_01020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01020
LYPH01000001.1	Protein Homology	CDS	223156	223371	.	+	0	ID=cds-OAR21825.1;Parent=gene-A8144_01020;Dbxref=NCBI_GP:OAR21825.1;Name=OAR21825.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008259699.1;locus_tag=A8144_01020;product=hypothetical protein;protein_id=OAR21825.1;transl_table=11
LYPH01000001.1	Genbank	gene	223421	224923	.	+	.	ID=gene-A8144_01025;Name=A8144_01025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01025
LYPH01000001.1	Protein Homology	CDS	223421	224923	.	+	0	ID=cds-OAR21798.1;Parent=gene-A8144_01025;Dbxref=NCBI_GP:OAR21798.1;Name=OAR21798.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011725921.1;locus_tag=A8144_01025;product=ATPase;protein_id=OAR21798.1;transl_table=11
LYPH01000001.1	Genbank	gene	224983	225237	.	-	.	ID=gene-A8144_01030;Name=A8144_01030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01030
LYPH01000001.1	Protein Homology	CDS	224983	225237	.	-	0	ID=cds-OAR21799.1;Parent=gene-A8144_01030;Dbxref=NCBI_GP:OAR21799.1;Name=OAR21799.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907938.1;locus_tag=A8144_01030;product=WhiB family transcriptional regulator;protein_id=OAR21799.1;transl_table=11
LYPH01000001.1	Genbank	gene	226524	227045	.	+	.	ID=gene-A8144_01035;Name=A8144_01035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01035
LYPH01000001.1	Protein Homology	CDS	226524	227045	.	+	0	ID=cds-OAR21826.1;Parent=gene-A8144_01035;Dbxref=NCBI_GP:OAR21826.1;Name=OAR21826.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907939.1;locus_tag=A8144_01035;product=hypothetical protein;protein_id=OAR21826.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	226997	227422	.	-	.	ID=gene-A8144_01040;Name=A8144_01040;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01040;pseudo=true
LYPH01000001.1	Protein Homology	CDS	226997	227422	.	-	0	ID=cds-A8144_01040;Parent=gene-A8144_01040;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011895517.1;locus_tag=A8144_01040;product=GCN5 family acetyltransferase;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	227473	228573	.	-	.	ID=gene-A8144_01045;Name=A8144_01045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01045
LYPH01000001.1	Protein Homology	CDS	227473	228573	.	-	0	ID=cds-OAR21827.1;Parent=gene-A8144_01045;Dbxref=NCBI_GP:OAR21827.1;Name=OAR21827.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012393209.1;locus_tag=A8144_01045;product=hypothetical protein;protein_id=OAR21827.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	229412	230109	.	+	.	ID=gene-A8144_01050;Name=A8144_01050;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01050;pseudo=true
LYPH01000001.1	Protein Homology	CDS	229412	230109	.	+	0	ID=cds-A8144_01050;Parent=gene-A8144_01050;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011740493.1;locus_tag=A8144_01050;product=chromosome partitioning protein;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	230201	231424	.	-	.	ID=gene-A8144_01055;Name=A8144_01055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01055
LYPH01000001.1	Protein Homology	CDS	230201	231424	.	-	0	ID=cds-OAR21800.1;Parent=gene-A8144_01055;Dbxref=NCBI_GP:OAR21800.1;Name=OAR21800.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009978674.1;locus_tag=A8144_01055;product=hypothetical protein;protein_id=OAR21800.1;transl_table=11
LYPH01000001.1	Genbank	gene	231436	233004	.	-	.	ID=gene-A8144_01060;Name=A8144_01060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01060
LYPH01000001.1	Protein Homology	CDS	231436	233004	.	-	0	ID=cds-OAR21801.1;Parent=gene-A8144_01060;Dbxref=NCBI_GP:OAR21801.1;Name=OAR21801.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003416875.1;locus_tag=A8144_01060;product=DEAD/DEAH box helicase;protein_id=OAR21801.1;transl_table=11
LYPH01000001.1	Genbank	gene	233303	233686	.	+	.	ID=gene-A8144_01065;Name=A8144_01065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01065
LYPH01000001.1	GeneMarkS+	CDS	233303	233686	.	+	0	ID=cds-OAR21802.1;Parent=gene-A8144_01065;Dbxref=NCBI_GP:OAR21802.1;Name=OAR21802.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01065;product=hypothetical protein;protein_id=OAR21802.1;transl_table=11
LYPH01000001.1	Genbank	gene	234026	234613	.	-	.	ID=gene-A8144_01070;Name=A8144_01070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01070
LYPH01000001.1	Protein Homology	CDS	234026	234613	.	-	0	ID=cds-OAR21803.1;Parent=gene-A8144_01070;Dbxref=NCBI_GP:OAR21803.1;Name=OAR21803.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907943.1;locus_tag=A8144_01070;product=hypothetical protein;protein_id=OAR21803.1;transl_table=11
LYPH01000001.1	Genbank	gene	234912	235160	.	+	.	ID=gene-A8144_01075;Name=A8144_01075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01075
LYPH01000001.1	Protein Homology	CDS	234912	235160	.	+	0	ID=cds-OAR21804.1;Parent=gene-A8144_01075;Dbxref=NCBI_GP:OAR21804.1;Name=OAR21804.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907944.1;locus_tag=A8144_01075;product=ATP-binding protein;protein_id=OAR21804.1;transl_table=11
LYPH01000001.1	Genbank	gene	235147	235833	.	-	.	ID=gene-A8144_01080;Name=A8144_01080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01080
LYPH01000001.1	Protein Homology	CDS	235147	235833	.	-	0	ID=cds-OAR21828.1;Parent=gene-A8144_01080;Dbxref=NCBI_GP:OAR21828.1;Name=OAR21828.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907945.1;locus_tag=A8144_01080;product=TetR family transcriptional regulator;protein_id=OAR21828.1;transl_table=11
LYPH01000001.1	Genbank	gene	236020	237045	.	+	.	ID=gene-A8144_01085;Name=A8144_01085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01085
LYPH01000001.1	Protein Homology	CDS	236020	237045	.	+	0	ID=cds-OAR21805.1;Parent=gene-A8144_01085;Dbxref=NCBI_GP:OAR21805.1;Name=OAR21805.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907946.1;locus_tag=A8144_01085;product=hypothetical protein;protein_id=OAR21805.1;transl_table=11
LYPH01000001.1	Genbank	gene	237249	238436	.	+	.	ID=gene-A8144_01090;Name=A8144_01090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01090
LYPH01000001.1	Protein Homology	CDS	237249	238436	.	+	0	ID=cds-OAR21806.1;Parent=gene-A8144_01090;Dbxref=NCBI_GP:OAR21806.1;Name=OAR21806.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907947.1;locus_tag=A8144_01090;product=adenylyltransferase/sulfurtransferase MoeZ;protein_id=OAR21806.1;transl_table=11
LYPH01000001.1	Genbank	gene	238530	239384	.	+	.	ID=gene-A8144_01095;Name=A8144_01095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01095
LYPH01000001.1	Protein Homology	CDS	238530	239384	.	+	0	ID=cds-OAR21807.1;Parent=gene-A8144_01095;Dbxref=NCBI_GP:OAR21807.1;Name=OAR21807.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014712234.1;locus_tag=A8144_01095;product=TIGR02569 family protein;protein_id=OAR21807.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	239475	239769	.	-	.	ID=gene-A8144_01100;Name=A8144_01100;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01100;pseudo=true
LYPH01000001.1	Protein Homology	CDS	239475	239769	.	-	0	ID=cds-A8144_01100;Parent=gene-A8144_01100;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009955653.1;locus_tag=A8144_01100;product=DNA methyltransferase;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	gene	239850	240095	.	-	.	ID=gene-A8144_01105;Name=A8144_01105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01105
LYPH01000001.1	GeneMarkS+	CDS	239850	240095	.	-	0	ID=cds-OAR21808.1;Parent=gene-A8144_01105;Dbxref=NCBI_GP:OAR21808.1;Name=OAR21808.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01105;product=hypothetical protein;protein_id=OAR21808.1;transl_table=11
LYPH01000001.1	Genbank	pseudogene	241100	244203	.	+	.	ID=gene-A8144_01110;Name=A8144_01110;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01110;pseudo=true
LYPH01000001.1	Protein Homology	CDS	241100	244203	.	+	0	ID=cds-A8144_01110;Parent=gene-A8144_01110;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014383158.1;locus_tag=A8144_01110;product=ATP-dependent DNA helicase;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	pseudogene	244233	247169	.	+	.	ID=gene-A8144_01115;Name=A8144_01115;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01115;pseudo=true
LYPH01000001.1	Protein Homology	CDS	244233	247169	.	+	0	ID=cds-A8144_01115;Parent=gene-A8144_01115;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010949915.1;locus_tag=A8144_01115;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000001.1	Genbank	pseudogene	247468	248420	.	+	.	ID=gene-A8144_01120;Name=A8144_01120;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01120;pseudo=true
LYPH01000001.1	Protein Homology	CDS	247468	248420	.	+	0	ID=cds-A8144_01120;Parent=gene-A8144_01120;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020788323.1;locus_tag=A8144_01120;product=potassium transporter Kef;pseudo=true;transl_table=11
##sequence-region LYPH01000002.1 1 76657
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000002.1	Genbank	region	1	76657	.	+	.	ID=LYPH01000002.1:1..76657;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000002.1	Genbank	gene	431	673	.	+	.	ID=gene-A8144_04820;Name=A8144_04820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04820
LYPH01000002.1	GeneMarkS+	CDS	431	673	.	+	0	ID=cds-OAR21592.1;Parent=gene-A8144_04820;Dbxref=NCBI_GP:OAR21592.1;Name=OAR21592.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04820;product=hypothetical protein;protein_id=OAR21592.1;transl_table=11
LYPH01000002.1	Genbank	gene	810	1130	.	-	.	ID=gene-A8144_04825;Name=A8144_04825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04825
LYPH01000002.1	Protein Homology	CDS	810	1130	.	-	0	ID=cds-OAR21646.1;Parent=gene-A8144_04825;Dbxref=NCBI_GP:OAR21646.1;Name=OAR21646.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908403.1;locus_tag=A8144_04825;product=DNA-binding protein;protein_id=OAR21646.1;transl_table=11
LYPH01000002.1	Genbank	gene	1330	2373	.	-	.	ID=gene-A8144_04830;Name=A8144_04830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04830
LYPH01000002.1	Protein Homology	CDS	1330	2373	.	-	0	ID=cds-OAR21593.1;Parent=gene-A8144_04830;Dbxref=NCBI_GP:OAR21593.1;Name=OAR21593.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007775127.1;locus_tag=A8144_04830;product=transcription termination/antitermination protein NusA;protein_id=OAR21593.1;transl_table=11
LYPH01000002.1	Genbank	pseudogene	2430	2905	.	-	.	ID=gene-A8144_04835;Name=A8144_04835;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04835;pseudo=true
LYPH01000002.1	Protein Homology	CDS	2430	2905	.	-	0	ID=cds-A8144_04835;Parent=gene-A8144_04835;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015355252.1;locus_tag=A8144_04835;product=ribosome maturation factor RimP;pseudo=true;transl_table=11
LYPH01000002.1	Genbank	gene	3033	3569	.	+	.	ID=gene-A8144_04840;Name=A8144_04840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04840
LYPH01000002.1	Protein Homology	CDS	3033	3569	.	+	0	ID=cds-OAR21594.1;Parent=gene-A8144_04840;Dbxref=NCBI_GP:OAR21594.1;Name=OAR21594.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908405.1;locus_tag=A8144_04840;product=hypothetical protein;protein_id=OAR21594.1;transl_table=11
LYPH01000002.1	Genbank	gene	3566	4063	.	+	.	ID=gene-A8144_04845;Name=A8144_04845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04845
LYPH01000002.1	Protein Homology	CDS	3566	4063	.	+	0	ID=cds-OAR21595.1;Parent=gene-A8144_04845;Dbxref=NCBI_GP:OAR21595.1;Name=OAR21595.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908406.1;locus_tag=A8144_04845;product=hypothetical protein;protein_id=OAR21595.1;transl_table=11
LYPH01000002.1	Genbank	gene	4088	5692	.	-	.	ID=gene-A8144_04850;Name=A8144_04850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04850
LYPH01000002.1	Protein Homology	CDS	4088	5692	.	-	0	ID=cds-OAR21596.1;Parent=gene-A8144_04850;Dbxref=NCBI_GP:OAR21596.1;Name=OAR21596.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014001460.1;locus_tag=A8144_04850;product=MFS transporter;protein_id=OAR21596.1;transl_table=11
LYPH01000002.1	Genbank	pseudogene	5704	6924	.	-	.	ID=gene-A8144_04855;Name=A8144_04855;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04855;pseudo=true
LYPH01000002.1	Protein Homology	CDS	5704	6924	.	-	0	ID=cds-A8144_04855;Parent=gene-A8144_04855;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003927155.1;locus_tag=A8144_04855;product=siroheme synthase;pseudo=true;transl_table=11
LYPH01000002.1	Genbank	pseudogene	6973	8288	.	-	.	ID=gene-A8144_04860;Name=A8144_04860;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04860;pseudo=true
LYPH01000002.1	Protein Homology	CDS	6973	8288	.	-	0	ID=cds-A8144_04860;Parent=gene-A8144_04860;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003933186.1;locus_tag=A8144_04860;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000002.1	Genbank	gene	8390	9199	.	-	.	ID=gene-A8144_04865;Name=A8144_04865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04865
LYPH01000002.1	GeneMarkS+	CDS	8390	9199	.	-	0	ID=cds-OAR21597.1;Parent=gene-A8144_04865;Dbxref=NCBI_GP:OAR21597.1;Name=OAR21597.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04865;product=hypothetical protein;protein_id=OAR21597.1;transl_table=11
LYPH01000002.1	Genbank	pseudogene	10166	11651	.	-	.	ID=gene-A8144_04870;Name=A8144_04870;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04870;pseudo=true
LYPH01000002.1	Protein Homology	CDS	10166	11651	.	-	0	ID=cds-A8144_04870;Parent=gene-A8144_04870;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:B2HJU4.1;locus_tag=A8144_04870;product=malate:quinone oxidoreductase;pseudo=true;transl_table=11
LYPH01000002.1	Genbank	pseudogene	11802	12859	.	+	.	ID=gene-A8144_04875;Name=A8144_04875;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04875;pseudo=true
LYPH01000002.1	Protein Homology	CDS	11802	12859	.	+	0	ID=cds-A8144_04875;Parent=gene-A8144_04875;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020728314.1;locus_tag=A8144_04875;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000002.1	Genbank	gene	13059	13361	.	+	.	ID=gene-A8144_04880;Name=A8144_04880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04880
LYPH01000002.1	GeneMarkS+	CDS	13059	13361	.	+	0	ID=cds-OAR21598.1;Parent=gene-A8144_04880;Dbxref=NCBI_GP:OAR21598.1;Name=OAR21598.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04880;product=hypothetical protein;protein_id=OAR21598.1;transl_table=11
LYPH01000002.1	Genbank	gene	13451	13699	.	+	.	ID=gene-A8144_04885;Name=A8144_04885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04885
LYPH01000002.1	GeneMarkS+	CDS	13451	13699	.	+	0	ID=cds-OAR21599.1;Parent=gene-A8144_04885;Dbxref=NCBI_GP:OAR21599.1;Name=OAR21599.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04885;product=hypothetical protein;protein_id=OAR21599.1;transl_table=11
LYPH01000002.1	Genbank	gene	13973	14329	.	-	.	ID=gene-A8144_04890;Name=A8144_04890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04890
LYPH01000002.1	GeneMarkS+	CDS	13973	14329	.	-	0	ID=cds-OAR21600.1;Parent=gene-A8144_04890;Dbxref=NCBI_GP:OAR21600.1;Name=OAR21600.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04890;product=hypothetical protein;protein_id=OAR21600.1;transl_table=11
LYPH01000002.1	Genbank	pseudogene	14482	15613	.	+	.	ID=gene-A8144_04895;Name=A8144_04895;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04895;pseudo=true
LYPH01000002.1	Protein Homology	CDS	14482	15613	.	+	0	ID=cds-A8144_04895;Parent=gene-A8144_04895;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011725634.1;locus_tag=A8144_04895;product=nickel transporter;pseudo=true;transl_table=11
LYPH01000002.1	Genbank	gene	15918	16316	.	+	.	ID=gene-A8144_04900;Name=A8144_04900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04900
LYPH01000002.1	Protein Homology	CDS	15918	16316	.	+	0	ID=cds-OAR21647.1;Parent=gene-A8144_04900;Dbxref=NCBI_GP:OAR21647.1;Name=OAR21647.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908408.1;locus_tag=A8144_04900;product=hypothetical protein;protein_id=OAR21647.1;transl_table=11
LYPH01000002.1	Genbank	gene	16777	17526	.	-	.	ID=gene-A8144_04905;Name=A8144_04905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04905
LYPH01000002.1	Protein Homology	CDS	16777	17526	.	-	0	ID=cds-OAR21601.1;Parent=gene-A8144_04905;Dbxref=NCBI_GP:OAR21601.1;Name=OAR21601.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908409.1;locus_tag=A8144_04905;product=gamma-glutamyl-gamma-aminobutyrate hydrolase;protein_id=OAR21601.1;transl_table=11
LYPH01000002.1	Genbank	gene	17567	17785	.	-	.	ID=gene-A8144_04910;Name=A8144_04910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04910
LYPH01000002.1	GeneMarkS+	CDS	17567	17785	.	-	0	ID=cds-OAR21602.1;Parent=gene-A8144_04910;Dbxref=NCBI_GP:OAR21602.1;Name=OAR21602.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04910;product=hypothetical protein;protein_id=OAR21602.1;transl_table=11
LYPH01000002.1	Genbank	gene	17963	18256	.	-	.	ID=gene-A8144_04915;Name=A8144_04915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04915
LYPH01000002.1	Protein Homology	CDS	17963	18256	.	-	0	ID=cds-OAR21603.1;Parent=gene-A8144_04915;Dbxref=NCBI_GP:OAR21603.1;Name=OAR21603.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908410.1;locus_tag=A8144_04915;product=hypothetical protein;protein_id=OAR21603.1;transl_table=11
LYPH01000002.1	Genbank	gene	18680	19537	.	-	.	ID=gene-A8144_04920;Name=A8144_04920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04920
LYPH01000002.1	Protein Homology	CDS	18680	19537	.	-	0	ID=cds-OAR21604.1;Parent=gene-A8144_04920;Dbxref=NCBI_GP:OAR21604.1;Name=OAR21604.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908411.1;locus_tag=A8144_04920;product=type I methionyl aminopeptidase;protein_id=OAR21604.1;transl_table=11
LYPH01000002.1	Genbank	gene	19729	21555	.	-	.	ID=gene-A8144_04925;Name=A8144_04925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04925
LYPH01000002.1	Protein Homology	CDS	19729	21555	.	-	0	ID=cds-OAR21605.1;Parent=gene-A8144_04925;Dbxref=NCBI_GP:OAR21605.1;Name=OAR21605.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908412.1;locus_tag=A8144_04925;product=penicillin-binding protein;protein_id=OAR21605.1;transl_table=11
LYPH01000002.1	Genbank	pseudogene	22721	23487	.	-	.	ID=gene-A8144_04930;Name=A8144_04930;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04930;pseudo=true
LYPH01000002.1	Protein Homology	CDS	22721	23487	.	-	0	ID=cds-A8144_04930;Parent=gene-A8144_04930;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003887856.1;locus_tag=A8144_04930;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000002.1	Genbank	gene	23555	24733	.	-	.	ID=gene-A8144_04935;Name=A8144_04935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04935
LYPH01000002.1	Protein Homology	CDS	23555	24733	.	-	0	ID=cds-OAR21606.1;Parent=gene-A8144_04935;Dbxref=NCBI_GP:OAR21606.1;Name=OAR21606.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBU5.1;locus_tag=A8144_04935;product=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;protein_id=OAR21606.1;transl_table=11
LYPH01000002.1	Genbank	gene	24786	26000	.	-	.	ID=gene-A8144_04940;Name=A8144_04940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04940
LYPH01000002.1	Protein Homology	CDS	24786	26000	.	-	0	ID=cds-OAR21607.1;Parent=gene-A8144_04940;Dbxref=NCBI_GP:OAR21607.1;Name=OAR21607.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908414.1;locus_tag=A8144_04940;product=zinc metalloprotease;protein_id=OAR21607.1;transl_table=11
LYPH01000002.1	Genbank	gene	26009	27229	.	-	.	ID=gene-A8144_04945;Name=A8144_04945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04945
LYPH01000002.1	Protein Homology	CDS	26009	27229	.	-	0	ID=cds-OAR21608.1;Parent=gene-A8144_04945;Dbxref=NCBI_GP:OAR21608.1;Name=OAR21608.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBU3.1;locus_tag=A8144_04945;product=1-deoxy-D-xylulose-5-phosphate reductoisomerase;protein_id=OAR21608.1;transl_table=11
LYPH01000002.1	Genbank	gene	27384	27638	.	+	.	ID=gene-A8144_04950;Name=A8144_04950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04950
LYPH01000002.1	Protein Homology	CDS	27384	27638	.	+	0	ID=cds-OAR21609.1;Parent=gene-A8144_04950;Dbxref=NCBI_GP:OAR21609.1;Name=OAR21609.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_016705993.1;locus_tag=A8144_04950;product=hypothetical protein;protein_id=OAR21609.1;transl_table=11
LYPH01000002.1	Genbank	gene	28465	28815	.	-	.	ID=gene-A8144_04955;Name=A8144_04955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04955
LYPH01000002.1	GeneMarkS+	CDS	28465	28815	.	-	0	ID=cds-OAR21610.1;Parent=gene-A8144_04955;Dbxref=NCBI_GP:OAR21610.1;Name=OAR21610.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04955;product=hypothetical protein;protein_id=OAR21610.1;transl_table=11
LYPH01000002.1	Genbank	gene	29091	29333	.	-	.	ID=gene-A8144_04960;Name=A8144_04960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04960
LYPH01000002.1	GeneMarkS+	CDS	29091	29333	.	-	0	ID=cds-OAR21611.1;Parent=gene-A8144_04960;Dbxref=NCBI_GP:OAR21611.1;Name=OAR21611.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04960;product=hypothetical protein;protein_id=OAR21611.1;transl_table=11
LYPH01000002.1	Genbank	pseudogene	30633	31669	.	-	.	ID=gene-A8144_04965;Name=A8144_04965;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04965;pseudo=true
LYPH01000002.1	Protein Homology	CDS	30633	31669	.	-	0	ID=cds-A8144_04965;Parent=gene-A8144_04965;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005626604.1;locus_tag=A8144_04965;product=23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN;pseudo=true;transl_table=11
LYPH01000002.1	Genbank	gene	31692	32630	.	-	.	ID=gene-A8144_04970;Name=A8144_04970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04970
LYPH01000002.1	Protein Homology	CDS	31692	32630	.	-	0	ID=cds-OAR21612.1;Parent=gene-A8144_04970;Dbxref=NCBI_GP:OAR21612.1;Name=OAR21612.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBU1.1;locus_tag=A8144_04970;product=phosphatidate cytidylyltransferase;protein_id=OAR21612.1;transl_table=11
LYPH01000002.1	Genbank	gene	32662	33219	.	-	.	ID=gene-A8144_04975;Name=A8144_04975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04975
LYPH01000002.1	Protein Homology	CDS	32662	33219	.	-	0	ID=cds-OAR21613.1;Parent=gene-A8144_04975;Dbxref=NCBI_GP:OAR21613.1;Name=OAR21613.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019969673.1;locus_tag=A8144_04975;product=ribosome recycling factor;protein_id=OAR21613.1;transl_table=11
LYPH01000002.1	Genbank	gene	33278	34117	.	-	.	ID=gene-A8144_04980;Name=A8144_04980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04980
LYPH01000002.1	Protein Homology	CDS	33278	34117	.	-	0	ID=cds-OAR21614.1;Parent=gene-A8144_04980;Dbxref=NCBI_GP:OAR21614.1;Name=OAR21614.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908419.1;locus_tag=A8144_04980;product=UMP kinase;protein_id=OAR21614.1;transl_table=11
LYPH01000002.1	Genbank	pseudogene	34968	35716	.	+	.	ID=gene-A8144_04985;Name=A8144_04985;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04985;pseudo=true
LYPH01000002.1	Protein Homology	CDS	34968	35716	.	+	0	ID=cds-A8144_04985;Parent=gene-A8144_04985;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003917701.1;locus_tag=A8144_04985;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000002.1	Genbank	gene	36079	36336	.	-	.	ID=gene-A8144_04990;Name=A8144_04990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04990
LYPH01000002.1	GeneMarkS+	CDS	36079	36336	.	-	0	ID=cds-OAR21615.1;Parent=gene-A8144_04990;Dbxref=NCBI_GP:OAR21615.1;Name=OAR21615.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04990;product=hypothetical protein;protein_id=OAR21615.1;transl_table=11
LYPH01000002.1	Genbank	pseudogene	36572	38148	.	-	.	ID=gene-A8144_04995;Name=A8144_04995;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04995;pseudo=true
LYPH01000002.1	Protein Homology	CDS	36572	38148	.	-	0	ID=cds-A8144_04995;Parent=gene-A8144_04995;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003901014.1;locus_tag=A8144_04995;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000002.1	Genbank	pseudogene	38253	38704	.	+	.	ID=gene-A8144_05000;Name=A8144_05000;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05000;pseudo=true
LYPH01000002.1	Protein Homology	CDS	38253	38704	.	+	0	ID=cds-A8144_05000;Parent=gene-A8144_05000;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007171405.1;locus_tag=A8144_05000;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000002.1	Genbank	gene	38708	40114	.	-	.	ID=gene-A8144_05005;Name=A8144_05005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05005
LYPH01000002.1	Protein Homology	CDS	38708	40114	.	-	0	ID=cds-OAR21616.1;Parent=gene-A8144_05005;Dbxref=NCBI_GP:OAR21616.1;Name=OAR21616.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33040.1;locus_tag=A8144_05005;product=amidase;protein_id=OAR21616.1;transl_table=11
LYPH01000002.1	Genbank	gene	40150	40980	.	-	.	ID=gene-A8144_05010;Name=A8144_05010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05010
LYPH01000002.1	Protein Homology	CDS	40150	40980	.	-	0	ID=cds-OAR21617.1;Parent=gene-A8144_05010;Dbxref=NCBI_GP:OAR21617.1;Name=OAR21617.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014213980.1;locus_tag=A8144_05010;product=translation elongation factor Ts;protein_id=OAR21617.1;transl_table=11
LYPH01000002.1	Genbank	gene	40982	41815	.	-	.	ID=gene-A8144_05015;Name=A8144_05015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05015
LYPH01000002.1	Protein Homology	CDS	40982	41815	.	-	0	ID=cds-OAR21618.1;Parent=gene-A8144_05015;Dbxref=NCBI_GP:OAR21618.1;Name=OAR21618.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33038.1;locus_tag=A8144_05015;product=30S ribosomal protein S2;protein_id=OAR21618.1;transl_table=11
LYPH01000002.1	Genbank	gene	42639	43532	.	-	.	ID=gene-A8144_05020;Name=A8144_05020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05020
LYPH01000002.1	Protein Homology	CDS	42639	43532	.	-	0	ID=cds-OAR21648.1;Parent=gene-A8144_05020;Dbxref=NCBI_GP:OAR21648.1;Name=OAR21648.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBU0.1;locus_tag=A8144_05020;product=recombinase XerC;protein_id=OAR21648.1;transl_table=11
LYPH01000002.1	Genbank	gene	43613	43846	.	-	.	ID=gene-A8144_05025;Name=A8144_05025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05025
LYPH01000002.1	GeneMarkS+	CDS	43613	43846	.	-	0	ID=cds-OAR21619.1;Parent=gene-A8144_05025;Dbxref=NCBI_GP:OAR21619.1;Name=OAR21619.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05025;product=hypothetical protein;protein_id=OAR21619.1;transl_table=11
LYPH01000002.1	Genbank	gene	44138	44377	.	-	.	ID=gene-A8144_05030;Name=A8144_05030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05030
LYPH01000002.1	GeneMarkS+	CDS	44138	44377	.	-	0	ID=cds-OAR21620.1;Parent=gene-A8144_05030;Dbxref=NCBI_GP:OAR21620.1;Name=OAR21620.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05030;product=hypothetical protein;protein_id=OAR21620.1;transl_table=11
LYPH01000002.1	Genbank	gene	44549	44914	.	-	.	ID=gene-A8144_05035;Name=A8144_05035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05035
LYPH01000002.1	Protein Homology	CDS	44549	44914	.	-	0	ID=cds-OAR21621.1;Parent=gene-A8144_05035;Dbxref=NCBI_GP:OAR21621.1;Name=OAR21621.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908424.1;locus_tag=A8144_05035;product=hypothetical protein;protein_id=OAR21621.1;transl_table=11
LYPH01000002.1	Genbank	gene	45598	45918	.	-	.	ID=gene-A8144_05040;Name=A8144_05040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05040
LYPH01000002.1	Protein Homology	CDS	45598	45918	.	-	0	ID=cds-OAR21622.1;Parent=gene-A8144_05040;Dbxref=NCBI_GP:OAR21622.1;Name=OAR21622.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908425.1;locus_tag=A8144_05040;product=hypothetical protein;protein_id=OAR21622.1;transl_table=11
LYPH01000002.1	Genbank	gene	46171	46431	.	-	.	ID=gene-A8144_05045;Name=A8144_05045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05045
LYPH01000002.1	Protein Homology	CDS	46171	46431	.	-	0	ID=cds-OAR21649.1;Parent=gene-A8144_05045;Dbxref=NCBI_GP:OAR21649.1;Name=OAR21649.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908426.1;locus_tag=A8144_05045;product=hypothetical protein;protein_id=OAR21649.1;transl_table=11
LYPH01000002.1	Genbank	gene	46641	47030	.	-	.	ID=gene-A8144_05050;Name=A8144_05050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05050
LYPH01000002.1	Protein Homology	CDS	46641	47030	.	-	0	ID=cds-OAR21623.1;Parent=gene-A8144_05050;Dbxref=NCBI_GP:OAR21623.1;Name=OAR21623.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908427.1;locus_tag=A8144_05050;product=hypothetical protein;protein_id=OAR21623.1;transl_table=11
LYPH01000002.1	Genbank	gene	47071	47292	.	-	.	ID=gene-A8144_05055;Name=A8144_05055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05055
LYPH01000002.1	GeneMarkS+	CDS	47071	47292	.	-	0	ID=cds-OAR21624.1;Parent=gene-A8144_05055;Dbxref=NCBI_GP:OAR21624.1;Name=OAR21624.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05055;product=hypothetical protein;protein_id=OAR21624.1;transl_table=11
LYPH01000002.1	Genbank	gene	47310	47540	.	+	.	ID=gene-A8144_05060;Name=A8144_05060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05060
LYPH01000002.1	GeneMarkS+	CDS	47310	47540	.	+	0	ID=cds-OAR21625.1;Parent=gene-A8144_05060;Dbxref=NCBI_GP:OAR21625.1;Name=OAR21625.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05060;product=hypothetical protein;protein_id=OAR21625.1;transl_table=11
LYPH01000002.1	Genbank	gene	49001	49201	.	+	.	ID=gene-A8144_05065;Name=A8144_05065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05065
LYPH01000002.1	Protein Homology	CDS	49001	49201	.	+	0	ID=cds-OAR21626.1;Parent=gene-A8144_05065;Dbxref=NCBI_GP:OAR21626.1;Name=OAR21626.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908428.1;locus_tag=A8144_05065;product=hypothetical protein;protein_id=OAR21626.1;transl_table=11
LYPH01000002.1	Genbank	gene	50174	50476	.	-	.	ID=gene-A8144_05070;Name=A8144_05070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05070
LYPH01000002.1	GeneMarkS+	CDS	50174	50476	.	-	0	ID=cds-OAR21627.1;Parent=gene-A8144_05070;Dbxref=NCBI_GP:OAR21627.1;Name=OAR21627.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05070;product=hypothetical protein;protein_id=OAR21627.1;transl_table=11
LYPH01000002.1	Genbank	gene	50495	50785	.	-	.	ID=gene-A8144_05075;Name=A8144_05075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05075
LYPH01000002.1	Protein Homology	CDS	50495	50785	.	-	0	ID=cds-OAR21628.1;Parent=gene-A8144_05075;Dbxref=NCBI_GP:OAR21628.1;Name=OAR21628.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33024.2;locus_tag=A8144_05075;product=hypothetical protein;protein_id=OAR21628.1;transl_table=11
LYPH01000002.1	Genbank	pseudogene	50924	51458	.	-	.	ID=gene-A8144_05080;Name=A8144_05080;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05080;pseudo=true
LYPH01000002.1	Protein Homology	CDS	50924	51458	.	-	0	ID=cds-A8144_05080;Parent=gene-A8144_05080;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011740110.1;locus_tag=A8144_05080;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000002.1	Genbank	gene	52034	52255	.	-	.	ID=gene-A8144_05085;Name=A8144_05085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05085
LYPH01000002.1	GeneMarkS+	CDS	52034	52255	.	-	0	ID=cds-OAR21629.1;Parent=gene-A8144_05085;Dbxref=NCBI_GP:OAR21629.1;Name=OAR21629.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05085;product=hypothetical protein;protein_id=OAR21629.1;transl_table=11
LYPH01000002.1	Genbank	gene	52336	52521	.	-	.	ID=gene-A8144_05090;Name=A8144_05090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05090
LYPH01000002.1	GeneMarkS+	CDS	52336	52521	.	-	0	ID=cds-OAR21630.1;Parent=gene-A8144_05090;Dbxref=NCBI_GP:OAR21630.1;Name=OAR21630.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05090;product=hypothetical protein;protein_id=OAR21630.1;transl_table=11
LYPH01000002.1	Genbank	gene	52599	52796	.	+	.	ID=gene-A8144_05095;Name=A8144_05095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05095
LYPH01000002.1	GeneMarkS+	CDS	52599	52796	.	+	0	ID=cds-OAR21631.1;Parent=gene-A8144_05095;Dbxref=NCBI_GP:OAR21631.1;Name=OAR21631.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05095;product=hypothetical protein;protein_id=OAR21631.1;transl_table=11
LYPH01000002.1	Genbank	gene	52815	53120	.	-	.	ID=gene-A8144_05100;Name=A8144_05100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05100
LYPH01000002.1	Protein Homology	CDS	52815	53120	.	-	0	ID=cds-OAR21632.1;Parent=gene-A8144_05100;Dbxref=NCBI_GP:OAR21632.1;Name=OAR21632.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005056986.1;locus_tag=A8144_05100;product=hypothetical protein;protein_id=OAR21632.1;transl_table=11
LYPH01000002.1	Genbank	gene	53233	53955	.	-	.	ID=gene-A8144_05105;Name=A8144_05105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05105
LYPH01000002.1	Protein Homology	CDS	53233	53955	.	-	0	ID=cds-OAR21633.1;Parent=gene-A8144_05105;Dbxref=NCBI_GP:OAR21633.1;Name=OAR21633.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33022.1;locus_tag=A8144_05105;product=ribonuclease HII;protein_id=OAR21633.1;transl_table=11
LYPH01000002.1	Genbank	gene	53958	54827	.	-	.	ID=gene-A8144_05110;Name=A8144_05110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05110
LYPH01000002.1	Protein Homology	CDS	53958	54827	.	-	0	ID=cds-OAR21650.1;Parent=gene-A8144_05110;Dbxref=NCBI_GP:OAR21650.1;Name=OAR21650.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33021.1;locus_tag=A8144_05110;product=signal peptidase I;protein_id=OAR21650.1;transl_table=11
LYPH01000002.1	Genbank	gene	54907	55248	.	-	.	ID=gene-A8144_05115;Name=A8144_05115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05115
LYPH01000002.1	Protein Homology	CDS	54907	55248	.	-	0	ID=cds-OAR21634.1;Parent=gene-A8144_05115;Dbxref=NCBI_GP:OAR21634.1;Name=OAR21634.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009678849.1;locus_tag=A8144_05115;product=50S ribosomal protein L19;protein_id=OAR21634.1;transl_table=11
LYPH01000002.1	Genbank	gene	55782	56012	.	+	.	ID=gene-A8144_05120;Name=A8144_05120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05120
LYPH01000002.1	GeneMarkS+	CDS	55782	56012	.	+	0	ID=cds-OAR21635.1;Parent=gene-A8144_05120;Dbxref=NCBI_GP:OAR21635.1;Name=OAR21635.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05120;product=hypothetical protein;protein_id=OAR21635.1;transl_table=11
LYPH01000002.1	Genbank	gene	56534	57250	.	-	.	ID=gene-A8144_05125;Name=A8144_05125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05125
LYPH01000002.1	Protein Homology	CDS	56534	57250	.	-	0	ID=cds-OAR21636.1;Parent=gene-A8144_05125;Dbxref=NCBI_GP:OAR21636.1;Name=OAR21636.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33017.1;locus_tag=A8144_05125;product=tRNA (guanosine(37)-N1)-methyltransferase TrmD;protein_id=OAR21636.1;transl_table=11
LYPH01000002.1	Genbank	gene	57247	57765	.	-	.	ID=gene-A8144_05130;Name=A8144_05130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05130
LYPH01000002.1	Protein Homology	CDS	57247	57765	.	-	0	ID=cds-OAR21651.1;Parent=gene-A8144_05130;Dbxref=NCBI_GP:OAR21651.1;Name=OAR21651.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008258891.1;locus_tag=A8144_05130;product=ribosome maturation factor RimM;protein_id=OAR21651.1;transl_table=11
LYPH01000002.1	Genbank	gene	57791	58033	.	-	.	ID=gene-A8144_05135;Name=A8144_05135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05135
LYPH01000002.1	Protein Homology	CDS	57791	58033	.	-	0	ID=cds-OAR21637.1;Parent=gene-A8144_05135;Dbxref=NCBI_GP:OAR21637.1;Name=OAR21637.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_006242163.1;locus_tag=A8144_05135;product=hypothetical protein;protein_id=OAR21637.1;transl_table=11
LYPH01000002.1	Genbank	gene	58058	58540	.	-	.	ID=gene-A8144_05140;Name=A8144_05140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05140
LYPH01000002.1	Protein Homology	CDS	58058	58540	.	-	0	ID=cds-OAR21652.1;Parent=gene-A8144_05140;Dbxref=NCBI_GP:OAR21652.1;Name=OAR21652.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33014.1;locus_tag=A8144_05140;product=30S ribosomal protein S16;protein_id=OAR21652.1;transl_table=11
LYPH01000002.1	Genbank	gene	59201	59587	.	+	.	ID=gene-A8144_05145;Name=A8144_05145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05145
LYPH01000002.1	GeneMarkS+	CDS	59201	59587	.	+	0	ID=cds-OAR21638.1;Parent=gene-A8144_05145;Dbxref=NCBI_GP:OAR21638.1;Name=OAR21638.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05145;product=hypothetical protein;protein_id=OAR21638.1;transl_table=11
LYPH01000002.1	Genbank	gene	59748	59927	.	+	.	ID=gene-A8144_05150;Name=A8144_05150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05150
LYPH01000002.1	GeneMarkS+	CDS	59748	59927	.	+	0	ID=cds-OAR21639.1;Parent=gene-A8144_05150;Dbxref=NCBI_GP:OAR21639.1;Name=OAR21639.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05150;product=hypothetical protein;protein_id=OAR21639.1;transl_table=11
LYPH01000002.1	Genbank	pseudogene	60535	61582	.	-	.	ID=gene-A8144_05155;Name=A8144_05155;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05155;pseudo=true
LYPH01000002.1	Protein Homology	CDS	60535	61582	.	-	0	ID=cds-A8144_05155;Parent=gene-A8144_05155;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015303635.1;locus_tag=A8144_05155;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000002.1	Genbank	gene	61596	63161	.	-	.	ID=gene-A8144_05160;Name=A8144_05160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05160
LYPH01000002.1	Protein Homology	CDS	61596	63161	.	-	0	ID=cds-OAR21640.1;Parent=gene-A8144_05160;Dbxref=NCBI_GP:OAR21640.1;Name=OAR21640.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33013.1;locus_tag=A8144_05160;product=signal recognition particle protein;protein_id=OAR21640.1;transl_table=11
LYPH01000002.1	Genbank	gene	63300	65270	.	+	.	ID=gene-A8144_05165;Name=A8144_05165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05165
LYPH01000002.1	Protein Homology	CDS	63300	65270	.	+	0	ID=cds-OAR21641.1;Parent=gene-A8144_05165;Dbxref=NCBI_GP:OAR21641.1;Name=OAR21641.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33012.1;locus_tag=A8144_05165;product=molecular chaperone HtpG;protein_id=OAR21641.1;transl_table=11
LYPH01000002.1	Genbank	gene	65432	67222	.	+	.	ID=gene-A8144_05170;Name=A8144_05170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05170
LYPH01000002.1	Protein Homology	CDS	65432	67222	.	+	0	ID=cds-OAR21642.1;Parent=gene-A8144_05170;Dbxref=NCBI_GP:OAR21642.1;Name=OAR21642.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33011.1;locus_tag=A8144_05170;product=hypothetical protein;protein_id=OAR21642.1;transl_table=11
LYPH01000002.1	Genbank	gene	67243	67587	.	-	.	ID=gene-A8144_05175;Name=A8144_05175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05175
LYPH01000002.1	GeneMarkS+	CDS	67243	67587	.	-	0	ID=cds-OAR21643.1;Parent=gene-A8144_05175;Dbxref=NCBI_GP:OAR21643.1;Name=OAR21643.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05175;product=hypothetical protein;protein_id=OAR21643.1;transl_table=11
LYPH01000002.1	Genbank	gene	67748	67960	.	-	.	ID=gene-A8144_05180;Name=A8144_05180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05180
LYPH01000002.1	GeneMarkS+	CDS	67748	67960	.	-	0	ID=cds-OAR21644.1;Parent=gene-A8144_05180;Dbxref=NCBI_GP:OAR21644.1;Name=OAR21644.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05180;product=hypothetical protein;protein_id=OAR21644.1;transl_table=11
LYPH01000002.1	Genbank	pseudogene	68174	69527	.	-	.	ID=gene-A8144_05185;Name=A8144_05185;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05185;pseudo=true
LYPH01000002.1	Protein Homology	CDS	68174	69527	.	-	0	ID=cds-A8144_05185;Parent=gene-A8144_05185;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009938589.1;locus_tag=A8144_05185;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000002.1	Genbank	pseudogene	69654	69991	.	-	.	ID=gene-A8144_05190;Name=A8144_05190;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05190;pseudo=true
LYPH01000002.1	Protein Homology	CDS	69654	69991	.	-	0	ID=cds-A8144_05190;Parent=gene-A8144_05190;Note=indirectly regulates nitrogen metabolism%3B at high nitrogen levels P-II prevents the phosphorylation of NR-I%2C the transcriptional activator of the glutamine synthetase gene (glnA)%3B at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA%3B frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_018600748.1;locus_tag=A8144_05190;product=transcriptional regulator;pseudo=true;transl_table=11
LYPH01000002.1	Genbank	pseudogene	69988	71080	.	-	.	ID=gene-A8144_05195;Name=A8144_05195;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05195;pseudo=true
LYPH01000002.1	Protein Homology	CDS	69988	71080	.	-	0	ID=cds-A8144_05195;Parent=gene-A8144_05195;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019695708.1;locus_tag=A8144_05195;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000002.1	Genbank	gene	71243	72535	.	-	.	ID=gene-A8144_05200;Name=A8144_05200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05200
LYPH01000002.1	Protein Homology	CDS	71243	72535	.	-	0	ID=cds-OAR21645.1;Parent=gene-A8144_05200;Dbxref=NCBI_GP:OAR21645.1;Name=OAR21645.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33010.1;locus_tag=A8144_05200;product=signal recognition particle-docking protein FtsY;protein_id=OAR21645.1;transl_table=11
LYPH01000002.1	Genbank	gene	72649	76260	.	-	.	ID=gene-A8144_05205;Name=A8144_05205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05205
LYPH01000002.1	Protein Homology	CDS	72649	76260	.	-	0	ID=cds-OAR21653.1;Parent=gene-A8144_05205;Dbxref=NCBI_GP:OAR21653.1;Name=OAR21653.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBT5.1;locus_tag=A8144_05205;product=chromosome segregation protein SMC;protein_id=OAR21653.1;transl_table=11
##sequence-region LYPH01000003.1 1 1669
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000003.1	Genbank	region	1	1669	.	+	.	ID=LYPH01000003.1:1..1669;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000003.1	Genbank	gene	1	786	.	+	.	ID=gene-A8144_14145;Name=A8144_14145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14145;partial=true;start_range=.,1
LYPH01000003.1	Protein Homology	CDS	1	786	.	+	0	ID=cds-OAR21591.1;Parent=gene-A8144_14145;Dbxref=NCBI_GP:OAR21591.1;Name=OAR21591.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908913.1;locus_tag=A8144_14145;partial=true;product=SAM-dependent methyltransferase;protein_id=OAR21591.1;start_range=.,1;transl_table=11
LYPH01000003.1	Genbank	pseudogene	910	1669	.	-	.	ID=gene-A8144_14150;Name=A8144_14150;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_14150;pseudo=true
LYPH01000003.1	Protein Homology	CDS	910	1669	.	-	0	ID=cds-A8144_14150;Parent=gene-A8144_14150;Note=frameshifted%3B incomplete%3B missing start;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007768317.1;locus_tag=A8144_14150;product=SAM-dependent methyltransferase;pseudo=true;transl_table=11
##sequence-region LYPH01000004.1 1 1611
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000004.1	Genbank	region	1	1611	.	+	.	ID=LYPH01000004.1:1..1611;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
##sequence-region LYPH01000005.1 1 491
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000005.1	Genbank	region	1	491	.	+	.	ID=LYPH01000005.1:1..491;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
##sequence-region LYPH01000006.1 1 1359
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000006.1	Genbank	region	1	1359	.	+	.	ID=LYPH01000006.1:1..1359;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000006.1	Genbank	gene	86	1359	.	+	.	ID=gene-A8144_14155;Name=A8144_14155;end_range=1359,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14155;partial=true
LYPH01000006.1	Protein Homology	CDS	86	1359	.	+	0	ID=cds-OAR21590.1;Parent=gene-A8144_14155;Dbxref=NCBI_GP:OAR21590.1;Name=OAR21590.1;end_range=1359,.;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020786520.1;locus_tag=A8144_14155;partial=true;product=glycosyl transferase family 1;protein_id=OAR21590.1;transl_table=11
##sequence-region LYPH01000007.1 1 1359
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000007.1	Genbank	region	1	1359	.	+	.	ID=LYPH01000007.1:1..1359;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000007.1	Genbank	gene	86	1359	.	+	.	ID=gene-A8144_14160;Name=A8144_14160;end_range=1359,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14160;partial=true
LYPH01000007.1	Protein Homology	CDS	86	1359	.	+	0	ID=cds-OAR21589.1;Parent=gene-A8144_14160;Dbxref=NCBI_GP:OAR21589.1;Name=OAR21589.1;end_range=1359,.;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020786520.1;locus_tag=A8144_14160;partial=true;product=glycosyl transferase family 1;protein_id=OAR21589.1;transl_table=11
##sequence-region LYPH01000008.1 1 1696
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000008.1	Genbank	region	1	1696	.	+	.	ID=LYPH01000008.1:1..1696;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000008.1	Genbank	gene	202	519	.	-	.	ID=gene-A8144_14165;Name=A8144_14165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14165
LYPH01000008.1	GeneMarkS+	CDS	202	519	.	-	0	ID=cds-OAR21588.1;Parent=gene-A8144_14165;Dbxref=NCBI_GP:OAR21588.1;Name=OAR21588.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_14165;product=hypothetical protein;protein_id=OAR21588.1;transl_table=11
##sequence-region LYPH01000009.1 1 1307
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000009.1	Genbank	region	1	1307	.	+	.	ID=LYPH01000009.1:1..1307;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000009.1	Genbank	gene	696	1067	.	+	.	ID=gene-A8144_14170;Name=A8144_14170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14170
LYPH01000009.1	GeneMarkS+	CDS	696	1067	.	+	0	ID=cds-OAR21587.1;Parent=gene-A8144_14170;Dbxref=NCBI_GP:OAR21587.1;Name=OAR21587.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_14170;product=hypothetical protein;protein_id=OAR21587.1;transl_table=11
##sequence-region LYPH01000010.1 1 1213
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000010.1	Genbank	region	1	1213	.	+	.	ID=LYPH01000010.1:1..1213;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000010.1	Genbank	pseudogene	85	876	.	+	.	ID=gene-A8144_14175;Name=A8144_14175;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_14175;pseudo=true
LYPH01000010.1	Protein Homology	CDS	85	876	.	+	0	ID=cds-A8144_14175;Parent=gene-A8144_14175;Note=incomplete%3B partial in the middle of a contig%3B missing start;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908520.1;locus_tag=A8144_14175;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region LYPH01000011.1 1 73824
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000011.1	Genbank	region	1	73824	.	+	.	ID=LYPH01000011.1:1..73824;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000011.1	Genbank	gene	587	979	.	-	.	ID=gene-A8144_05210;Name=A8144_05210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05210
LYPH01000011.1	Protein Homology	CDS	587	979	.	-	0	ID=cds-OAR21523.1;Parent=gene-A8144_05210;Dbxref=NCBI_GP:OAR21523.1;Name=OAR21523.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908030.1;locus_tag=A8144_05210;product=hypothetical protein;protein_id=OAR21523.1;transl_table=11
LYPH01000011.1	Genbank	gene	1052	1852	.	-	.	ID=gene-A8144_05215;Name=A8144_05215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05215
LYPH01000011.1	Protein Homology	CDS	1052	1852	.	-	0	ID=cds-OAR21524.1;Parent=gene-A8144_05215;Dbxref=NCBI_GP:OAR21524.1;Name=OAR21524.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46815.1;locus_tag=A8144_05215;product=cell wall synthesis protein;protein_id=OAR21524.1;transl_table=11
LYPH01000011.1	Genbank	gene	2099	2389	.	-	.	ID=gene-A8144_05220;Name=A8144_05220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05220
LYPH01000011.1	Protein Homology	CDS	2099	2389	.	-	0	ID=cds-OAR21525.1;Parent=gene-A8144_05220;Dbxref=NCBI_GP:OAR21525.1;Name=OAR21525.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007170773.1;locus_tag=A8144_05220;product=hypothetical protein;protein_id=OAR21525.1;transl_table=11
LYPH01000011.1	Genbank	gene	2514	3146	.	-	.	ID=gene-A8144_05225;Name=A8144_05225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05225
LYPH01000011.1	Protein Homology	CDS	2514	3146	.	-	0	ID=cds-OAR21526.1;Parent=gene-A8144_05225;Dbxref=NCBI_GP:OAR21526.1;Name=OAR21526.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q73YR4.1;locus_tag=A8144_05225;product=cell division protein SepF;protein_id=OAR21526.1;transl_table=11
LYPH01000011.1	Genbank	gene	3214	3996	.	-	.	ID=gene-A8144_05230;Name=A8144_05230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05230
LYPH01000011.1	Protein Homology	CDS	3214	3996	.	-	0	ID=cds-OAR21527.1;Parent=gene-A8144_05230;Dbxref=NCBI_GP:OAR21527.1;Name=OAR21527.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908026.1;locus_tag=A8144_05230;product=YggS family pyridoxal phosphate enzyme;protein_id=OAR21527.1;transl_table=11
LYPH01000011.1	Genbank	gene	3993	4742	.	-	.	ID=gene-A8144_05235;Name=A8144_05235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05235
LYPH01000011.1	Protein Homology	CDS	3993	4742	.	-	0	ID=cds-OAR21528.1;Parent=gene-A8144_05235;Dbxref=NCBI_GP:OAR21528.1;Name=OAR21528.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCE3.1;locus_tag=A8144_05235;product=Laccase;protein_id=OAR21528.1;transl_table=11
LYPH01000011.1	Genbank	gene	4765	5904	.	-	.	ID=gene-A8144_05240;Name=A8144_05240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05240
LYPH01000011.1	Protein Homology	CDS	4765	5904	.	-	0	ID=cds-OAR21579.1;Parent=gene-A8144_05240;Dbxref=NCBI_GP:OAR21579.1;Name=OAR21579.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003909602.1;locus_tag=A8144_05240;product=cell division protein FtsZ;protein_id=OAR21579.1;transl_table=11
LYPH01000011.1	Genbank	gene	6170	7195	.	-	.	ID=gene-A8144_05245;Name=A8144_05245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05245
LYPH01000011.1	Protein Homology	CDS	6170	7195	.	-	0	ID=cds-OAR21529.1;Parent=gene-A8144_05245;Dbxref=NCBI_GP:OAR21529.1;Name=OAR21529.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:B8ZQQ2.1;locus_tag=A8144_05245;product=cell division protein FtsQ;protein_id=OAR21529.1;transl_table=11
LYPH01000011.1	Genbank	gene	7192	8679	.	-	.	ID=gene-A8144_05250;Name=A8144_05250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05250
LYPH01000011.1	Protein Homology	CDS	7192	8679	.	-	0	ID=cds-OAR21530.1;Parent=gene-A8144_05250;Dbxref=NCBI_GP:OAR21530.1;Name=OAR21530.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P57994.1;locus_tag=A8144_05250;product=UDP-N-acetylmuramate--L-alanine ligase;protein_id=OAR21530.1;transl_table=11
LYPH01000011.1	Genbank	gene	8676	9899	.	-	.	ID=gene-A8144_05255;Name=A8144_05255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05255
LYPH01000011.1	Protein Homology	CDS	8676	9899	.	-	0	ID=cds-OAR21531.1;Parent=gene-A8144_05255;Dbxref=NCBI_GP:OAR21531.1;Name=OAR21531.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O69552.1;locus_tag=A8144_05255;product=undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase;protein_id=OAR21531.1;transl_table=11
LYPH01000011.1	Genbank	gene	9896	11500	.	-	.	ID=gene-A8144_05260;Name=A8144_05260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05260
LYPH01000011.1	Protein Homology	CDS	9896	11500	.	-	0	ID=cds-OAR21580.1;Parent=gene-A8144_05260;Dbxref=NCBI_GP:OAR21580.1;Name=OAR21580.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908020.1;locus_tag=A8144_05260;product=cell division protein FtsW;protein_id=OAR21580.1;transl_table=11
LYPH01000011.1	Genbank	gene	11507	12979	.	-	.	ID=gene-A8144_05265;Name=A8144_05265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05265
LYPH01000011.1	Protein Homology	CDS	11507	12979	.	-	0	ID=cds-OAR21532.1;Parent=gene-A8144_05265;Dbxref=NCBI_GP:OAR21532.1;Name=OAR21532.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P57995.1;locus_tag=A8144_05265;product=UDP-N-acetylmuramoylalanine--D-glutamate ligase;protein_id=OAR21532.1;transl_table=11
LYPH01000011.1	Genbank	gene	12981	14060	.	-	.	ID=gene-A8144_05270;Name=A8144_05270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05270
LYPH01000011.1	Protein Homology	CDS	12981	14060	.	-	0	ID=cds-OAR21533.1;Parent=gene-A8144_05270;Dbxref=NCBI_GP:OAR21533.1;Name=OAR21533.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003933045.1;locus_tag=A8144_05270;product=phospho-N-acetylmuramoyl-pentapeptide-transferase;protein_id=OAR21533.1;transl_table=11
LYPH01000011.1	Genbank	gene	14057	15610	.	-	.	ID=gene-A8144_05275;Name=A8144_05275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05275
LYPH01000011.1	Protein Homology	CDS	14057	15610	.	-	0	ID=cds-OAR21534.1;Parent=gene-A8144_05275;Dbxref=NCBI_GP:OAR21534.1;Name=OAR21534.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O69556.1;locus_tag=A8144_05275;product=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;protein_id=OAR21534.1;transl_table=11
LYPH01000011.1	Genbank	gene	15607	17214	.	-	.	ID=gene-A8144_05280;Name=A8144_05280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05280
LYPH01000011.1	Protein Homology	CDS	15607	17214	.	-	0	ID=cds-OAR21581.1;Parent=gene-A8144_05280;Dbxref=NCBI_GP:OAR21581.1;Name=OAR21581.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020188886.1;locus_tag=A8144_05280;product=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2%2C6-diaminopimelate ligase;protein_id=OAR21581.1;transl_table=11
LYPH01000011.1	Genbank	gene	17341	19368	.	-	.	ID=gene-A8144_05285;Name=A8144_05285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05285
LYPH01000011.1	Protein Homology	CDS	17341	19368	.	-	0	ID=cds-OAR21535.1;Parent=gene-A8144_05285;Dbxref=NCBI_GP:OAR21535.1;Name=OAR21535.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908015.1;locus_tag=A8144_05285;product=cell division protein FtsI;protein_id=OAR21535.1;transl_table=11
LYPH01000011.1	Genbank	gene	19365	20498	.	-	.	ID=gene-A8144_05290;Name=A8144_05290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05290
LYPH01000011.1	Protein Homology	CDS	19365	20498	.	-	0	ID=cds-OAR21536.1;Parent=gene-A8144_05290;Dbxref=NCBI_GP:OAR21536.1;Name=OAR21536.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908014.1;locus_tag=A8144_05290;product=hypothetical protein;protein_id=OAR21536.1;transl_table=11
LYPH01000011.1	Genbank	gene	20495	21613	.	-	.	ID=gene-A8144_05295;Name=A8144_05295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05295
LYPH01000011.1	Protein Homology	CDS	20495	21613	.	-	0	ID=cds-OAR21537.1;Parent=gene-A8144_05295;Dbxref=NCBI_GP:OAR21537.1;Name=OAR21537.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908013.1;locus_tag=A8144_05295;product=16S rRNA (cytosine(1402)-N(4))-methyltransferase;protein_id=OAR21537.1;transl_table=11
LYPH01000011.1	Genbank	gene	21741	22172	.	-	.	ID=gene-A8144_05300;Name=A8144_05300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05300
LYPH01000011.1	Protein Homology	CDS	21741	22172	.	-	0	ID=cds-OAR21538.1;Parent=gene-A8144_05300;Dbxref=NCBI_GP:OAR21538.1;Name=OAR21538.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908012.1;locus_tag=A8144_05300;product=cell division/cell wall cluster transcriptional repressor MraZ;protein_id=OAR21538.1;transl_table=11
LYPH01000011.1	Genbank	gene	22545	22949	.	-	.	ID=gene-A8144_05305;Name=A8144_05305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05305
LYPH01000011.1	Protein Homology	CDS	22545	22949	.	-	0	ID=cds-OAR21539.1;Parent=gene-A8144_05305;Dbxref=NCBI_GP:OAR21539.1;Name=OAR21539.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007170791.1;locus_tag=A8144_05305;product=hypothetical protein;protein_id=OAR21539.1;transl_table=11
LYPH01000011.1	Genbank	gene	23266	23898	.	+	.	ID=gene-A8144_05310;Name=A8144_05310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05310
LYPH01000011.1	Protein Homology	CDS	23266	23898	.	+	0	ID=cds-OAR21540.1;Parent=gene-A8144_05310;Dbxref=NCBI_GP:OAR21540.1;Name=OAR21540.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908010.1;locus_tag=A8144_05310;product=acetyltransferase;protein_id=OAR21540.1;transl_table=11
LYPH01000011.1	Genbank	gene	23970	24689	.	+	.	ID=gene-A8144_05315;Name=A8144_05315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05315
LYPH01000011.1	Protein Homology	CDS	23970	24689	.	+	0	ID=cds-OAR21582.1;Parent=gene-A8144_05315;Dbxref=NCBI_GP:OAR21582.1;Name=OAR21582.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908009.1;locus_tag=A8144_05315;product=DUF3153 domain-containing protein;protein_id=OAR21582.1;transl_table=11
LYPH01000011.1	Genbank	gene	24686	25600	.	-	.	ID=gene-A8144_05320;Name=A8144_05320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05320
LYPH01000011.1	Protein Homology	CDS	24686	25600	.	-	0	ID=cds-OAR21541.1;Parent=gene-A8144_05320;Dbxref=NCBI_GP:OAR21541.1;Name=OAR21541.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908008.1;locus_tag=A8144_05320;product=hypothetical protein;protein_id=OAR21541.1;transl_table=11
LYPH01000011.1	Genbank	pseudogene	25885	26925	.	+	.	ID=gene-A8144_05325;Name=A8144_05325;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05325;pseudo=true
LYPH01000011.1	Protein Homology	CDS	25885	26925	.	+	0	ID=cds-A8144_05325;Parent=gene-A8144_05325;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014877980.1;locus_tag=A8144_05325;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000011.1	Genbank	gene	26939	28456	.	+	.	ID=gene-A8144_05330;Name=A8144_05330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05330
LYPH01000011.1	Protein Homology	CDS	26939	28456	.	+	0	ID=cds-OAR21542.1;Parent=gene-A8144_05330;Dbxref=NCBI_GP:OAR21542.1;Name=OAR21542.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908007.1;locus_tag=A8144_05330;product=DUF2029 domain-containing protein;protein_id=OAR21542.1;transl_table=11
LYPH01000011.1	Genbank	gene	28453	28857	.	-	.	ID=gene-A8144_05335;Name=A8144_05335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05335
LYPH01000011.1	Protein Homology	CDS	28453	28857	.	-	0	ID=cds-OAR21543.1;Parent=gene-A8144_05335;Dbxref=NCBI_GP:OAR21543.1;Name=OAR21543.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014382392.1;locus_tag=A8144_05335;product=DNA-binding protein;protein_id=OAR21543.1;transl_table=11
LYPH01000011.1	Genbank	gene	29010	30212	.	+	.	ID=gene-A8144_05340;Name=A8144_05340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05340
LYPH01000011.1	Protein Homology	CDS	29010	30212	.	+	0	ID=cds-OAR21583.1;Parent=gene-A8144_05340;Dbxref=NCBI_GP:OAR21583.1;Name=OAR21583.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908005.1;locus_tag=A8144_05340;product=serine/threonine protein kinase;protein_id=OAR21583.1;transl_table=11
LYPH01000011.1	Genbank	gene	30225	31613	.	-	.	ID=gene-A8144_05345;Name=A8144_05345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05345
LYPH01000011.1	Protein Homology	CDS	30225	31613	.	-	0	ID=cds-OAR21544.1;Parent=gene-A8144_05345;Dbxref=NCBI_GP:OAR21544.1;Name=OAR21544.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019970054.1;locus_tag=A8144_05345;product=3-deoxy-7-phosphoheptulonate synthase;protein_id=OAR21544.1;transl_table=11
LYPH01000011.1	Genbank	gene	31677	32192	.	-	.	ID=gene-A8144_05350;Name=A8144_05350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05350
LYPH01000011.1	Protein Homology	CDS	31677	32192	.	-	0	ID=cds-OAR21545.1;Parent=gene-A8144_05350;Dbxref=NCBI_GP:OAR21545.1;Name=OAR21545.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908003.1;locus_tag=A8144_05350;product=hypothetical protein;protein_id=OAR21545.1;transl_table=11
LYPH01000011.1	Genbank	pseudogene	32320	33091	.	-	.	ID=gene-A8144_05355;Name=A8144_05355;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05355;pseudo=true
LYPH01000011.1	Protein Homology	CDS	32320	33091	.	-	0	ID=cds-A8144_05355;Parent=gene-A8144_05355;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020729408.1;locus_tag=A8144_05355;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000011.1	Genbank	gene	33209	34495	.	+	.	ID=gene-A8144_05360;Name=A8144_05360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05360
LYPH01000011.1	Protein Homology	CDS	33209	34495	.	+	0	ID=cds-OAR21546.1;Parent=gene-A8144_05360;Dbxref=NCBI_GP:OAR21546.1;Name=OAR21546.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908002.1;locus_tag=A8144_05360;product=alpha-(1-2)-phosphatidylinositol mannosyltransferase;protein_id=OAR21546.1;transl_table=11
LYPH01000011.1	Genbank	gene	34503	35237	.	-	.	ID=gene-A8144_05365;Name=A8144_05365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05365
LYPH01000011.1	Protein Homology	CDS	34503	35237	.	-	0	ID=cds-OAR21547.1;Parent=gene-A8144_05365;Dbxref=NCBI_GP:OAR21547.1;Name=OAR21547.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_006240879.1;locus_tag=A8144_05365;product=acyl-phosphate glycerol 3-phosphate acyltransferase;protein_id=OAR21547.1;transl_table=11
LYPH01000011.1	Genbank	gene	35323	35715	.	-	.	ID=gene-A8144_05370;Name=A8144_05370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05370
LYPH01000011.1	Protein Homology	CDS	35323	35715	.	-	0	ID=cds-OAR21584.1;Parent=gene-A8144_05370;Dbxref=NCBI_GP:OAR21584.1;Name=OAR21584.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908000.1;locus_tag=A8144_05370;product=hypothetical protein;protein_id=OAR21584.1;transl_table=11
LYPH01000011.1	Genbank	gene	35712	36959	.	-	.	ID=gene-A8144_05375;Name=A8144_05375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05375
LYPH01000011.1	Protein Homology	CDS	35712	36959	.	-	0	ID=cds-OAR21548.1;Parent=gene-A8144_05375;Dbxref=NCBI_GP:OAR21548.1;Name=OAR21548.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907999.1;locus_tag=A8144_05375;product=hypothetical protein;protein_id=OAR21548.1;transl_table=11
LYPH01000011.1	Genbank	gene	36980	37414	.	-	.	ID=gene-A8144_05380;Name=A8144_05380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05380
LYPH01000011.1	Protein Homology	CDS	36980	37414	.	-	0	ID=cds-OAR21549.1;Parent=gene-A8144_05380;Dbxref=NCBI_GP:OAR21549.1;Name=OAR21549.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015290472.1;locus_tag=A8144_05380;product=cyclase;protein_id=OAR21549.1;transl_table=11
LYPH01000011.1	Genbank	gene	37533	37940	.	-	.	ID=gene-A8144_05385;Name=A8144_05385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05385
LYPH01000011.1	Protein Homology	CDS	37533	37940	.	-	0	ID=cds-OAR21550.1;Parent=gene-A8144_05385;Dbxref=NCBI_GP:OAR21550.1;Name=OAR21550.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907997.1;locus_tag=A8144_05385;product=polyketide cyclase / dehydrase and lipid transport;protein_id=OAR21550.1;transl_table=11
LYPH01000011.1	Genbank	gene	38115	39917	.	+	.	ID=gene-A8144_05390;Name=A8144_05390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05390
LYPH01000011.1	Protein Homology	CDS	38115	39917	.	+	0	ID=cds-OAR21551.1;Parent=gene-A8144_05390;Dbxref=NCBI_GP:OAR21551.1;Name=OAR21551.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007170808.1;locus_tag=A8144_05390;product=long-chain fatty acid--CoA ligase;protein_id=OAR21551.1;transl_table=11
LYPH01000011.1	Genbank	gene	39914	41068	.	-	.	ID=gene-A8144_05395;Name=A8144_05395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05395
LYPH01000011.1	Protein Homology	CDS	39914	41068	.	-	0	ID=cds-OAR21552.1;Parent=gene-A8144_05395;Dbxref=NCBI_GP:OAR21552.1;Name=OAR21552.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907995.1;locus_tag=A8144_05395;product=alpha-(1-2)-phosphatidylinositol mannosyltransferase;protein_id=OAR21552.1;transl_table=11
LYPH01000011.1	Genbank	gene	41113	42237	.	-	.	ID=gene-A8144_05400;Name=A8144_05400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05400
LYPH01000011.1	Protein Homology	CDS	41113	42237	.	-	0	ID=cds-OAR21553.1;Parent=gene-A8144_05400;Dbxref=NCBI_GP:OAR21553.1;Name=OAR21553.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907994.1;locus_tag=A8144_05400;product=endopeptidase;protein_id=OAR21553.1;transl_table=11
LYPH01000011.1	Genbank	gene	42335	42604	.	-	.	ID=gene-A8144_05405;Name=A8144_05405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05405
LYPH01000011.1	GeneMarkS+	CDS	42335	42604	.	-	0	ID=cds-OAR21554.1;Parent=gene-A8144_05405;Dbxref=NCBI_GP:OAR21554.1;Name=OAR21554.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05405;product=hypothetical protein;protein_id=OAR21554.1;transl_table=11
LYPH01000011.1	Genbank	gene	44436	45536	.	-	.	ID=gene-A8144_05410;Name=A8144_05410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05410
LYPH01000011.1	Protein Homology	CDS	44436	45536	.	-	0	ID=cds-OAR21585.1;Parent=gene-A8144_05410;Dbxref=NCBI_GP:OAR21585.1;Name=OAR21585.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O69581.1;locus_tag=A8144_05410;product=anthranilate phosphoribosyltransferase;protein_id=OAR21585.1;transl_table=11
LYPH01000011.1	Genbank	gene	45673	46281	.	+	.	ID=gene-A8144_05415;Name=A8144_05415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05415
LYPH01000011.1	Protein Homology	CDS	45673	46281	.	+	0	ID=cds-OAR21555.1;Parent=gene-A8144_05415;Dbxref=NCBI_GP:OAR21555.1;Name=OAR21555.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003933075.1;locus_tag=A8144_05415;product=cytochrome B;protein_id=OAR21555.1;transl_table=11
LYPH01000011.1	Genbank	gene	46343	47212	.	+	.	ID=gene-A8144_05420;Name=A8144_05420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05420
LYPH01000011.1	Protein Homology	CDS	46343	47212	.	+	0	ID=cds-OAR21556.1;Parent=gene-A8144_05420;Dbxref=NCBI_GP:OAR21556.1;Name=OAR21556.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O69583.2;locus_tag=A8144_05420;product=cytochrome C;protein_id=OAR21556.1;transl_table=11
LYPH01000011.1	Genbank	gene	47209	48393	.	+	.	ID=gene-A8144_05425;Name=A8144_05425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05425
LYPH01000011.1	Protein Homology	CDS	47209	48393	.	+	0	ID=cds-OAR21557.1;Parent=gene-A8144_05425;Dbxref=NCBI_GP:OAR21557.1;Name=OAR21557.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907990.1;locus_tag=A8144_05425;product=menaquinol-cytochrome C reductase;protein_id=OAR21557.1;transl_table=11
LYPH01000011.1	Genbank	gene	48390	50045	.	+	.	ID=gene-A8144_05430;Name=A8144_05430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05430
LYPH01000011.1	Protein Homology	CDS	48390	50045	.	+	0	ID=cds-OAR21558.1;Parent=gene-A8144_05430;Dbxref=NCBI_GP:OAR21558.1;Name=OAR21558.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P15878.3;locus_tag=A8144_05430;product=menaquinol-cytochrome C reductase;protein_id=OAR21558.1;transl_table=11
LYPH01000011.1	Genbank	gene	50179	50817	.	-	.	ID=gene-A8144_05435;Name=A8144_05435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05435
LYPH01000011.1	Protein Homology	CDS	50179	50817	.	-	0	ID=cds-OAR21559.1;Parent=gene-A8144_05435;Dbxref=NCBI_GP:OAR21559.1;Name=OAR21559.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907988.1;locus_tag=A8144_05435;product=hypothetical protein;protein_id=OAR21559.1;transl_table=11
LYPH01000011.1	Genbank	gene	50817	51698	.	-	.	ID=gene-A8144_05440;Name=A8144_05440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05440
LYPH01000011.1	Protein Homology	CDS	50817	51698	.	-	0	ID=cds-OAR21560.1;Parent=gene-A8144_05440;Dbxref=NCBI_GP:OAR21560.1;Name=OAR21560.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907987.1;locus_tag=A8144_05440;product=hypothetical protein;protein_id=OAR21560.1;transl_table=11
LYPH01000011.1	Genbank	gene	51885	52304	.	-	.	ID=gene-A8144_05445;Name=A8144_05445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05445
LYPH01000011.1	Protein Homology	CDS	51885	52304	.	-	0	ID=cds-OAR21561.1;Parent=gene-A8144_05445;Dbxref=NCBI_GP:OAR21561.1;Name=OAR21561.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCF0.1;locus_tag=A8144_05445;product=cytochrome C oxidase subunit IV;protein_id=OAR21561.1;transl_table=11
LYPH01000011.1	Genbank	gene	52357	53418	.	-	.	ID=gene-A8144_05450;Name=A8144_05450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05450
LYPH01000011.1	Protein Homology	CDS	52357	53418	.	-	0	ID=cds-OAR21562.1;Parent=gene-A8144_05450;Dbxref=NCBI_GP:OAR21562.1;Name=OAR21562.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCF1.1;locus_tag=A8144_05450;product=cytochrome C oxidase subunit II;protein_id=OAR21562.1;transl_table=11
LYPH01000011.1	Genbank	gene	53612	55594	.	+	.	ID=gene-A8144_05455;Name=A8144_05455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05455
LYPH01000011.1	Protein Homology	CDS	53612	55594	.	+	0	ID=cds-OAR21586.1;Parent=gene-A8144_05455;Dbxref=NCBI_GP:OAR21586.1;Name=OAR21586.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014379955.1;locus_tag=A8144_05455;product=asparagine synthase (glutamine-hydrolyzing);protein_id=OAR21586.1;transl_table=11
LYPH01000011.1	Genbank	gene	55777	56751	.	-	.	ID=gene-A8144_05460;Name=A8144_05460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05460
LYPH01000011.1	Protein Homology	CDS	55777	56751	.	-	0	ID=cds-OAR21563.1;Parent=gene-A8144_05460;Dbxref=NCBI_GP:OAR21563.1;Name=OAR21563.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007170828.1;locus_tag=A8144_05460;product=ribokinase;protein_id=OAR21563.1;transl_table=11
LYPH01000011.1	Genbank	gene	56944	57585	.	+	.	ID=gene-A8144_05465;Name=A8144_05465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05465
LYPH01000011.1	Protein Homology	CDS	56944	57585	.	+	0	ID=cds-OAR21564.1;Parent=gene-A8144_05465;Dbxref=NCBI_GP:OAR21564.1;Name=OAR21564.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007770701.1;locus_tag=A8144_05465;product=hypothetical protein;protein_id=OAR21564.1;transl_table=11
LYPH01000011.1	Genbank	gene	57620	57976	.	-	.	ID=gene-A8144_05470;Name=A8144_05470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05470
LYPH01000011.1	Protein Homology	CDS	57620	57976	.	-	0	ID=cds-OAR21565.1;Parent=gene-A8144_05470;Dbxref=NCBI_GP:OAR21565.1;Name=OAR21565.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008256050.1;locus_tag=A8144_05470;product=iron-sulfur cluster insertion protein ErpA;protein_id=OAR21565.1;transl_table=11
LYPH01000011.1	Genbank	pseudogene	58027	59183	.	-	.	ID=gene-A8144_05475;Name=A8144_05475;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05475;pseudo=true
LYPH01000011.1	Protein Homology	CDS	58027	59183	.	-	0	ID=cds-A8144_05475;Parent=gene-A8144_05475;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003872275.1;locus_tag=A8144_05475;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000011.1	Genbank	gene	59310	59999	.	+	.	ID=gene-A8144_05480;Name=A8144_05480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05480
LYPH01000011.1	Protein Homology	CDS	59310	59999	.	+	0	ID=cds-OAR21566.1;Parent=gene-A8144_05480;Dbxref=NCBI_GP:OAR21566.1;Name=OAR21566.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015293527.1;locus_tag=A8144_05480;product=hypothetical protein;protein_id=OAR21566.1;transl_table=11
LYPH01000011.1	Genbank	gene	60089	61144	.	+	.	ID=gene-A8144_05485;Name=A8144_05485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05485
LYPH01000011.1	Protein Homology	CDS	60089	61144	.	+	0	ID=cds-OAR21567.1;Parent=gene-A8144_05485;Dbxref=NCBI_GP:OAR21567.1;Name=OAR21567.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O32953.1;locus_tag=A8144_05485;product=nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase;protein_id=OAR21567.1;transl_table=11
LYPH01000011.1	Genbank	gene	61491	61727	.	+	.	ID=gene-A8144_05490;Name=A8144_05490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05490
LYPH01000011.1	GeneMarkS+	CDS	61491	61727	.	+	0	ID=cds-OAR21568.1;Parent=gene-A8144_05490;Dbxref=NCBI_GP:OAR21568.1;Name=OAR21568.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05490;product=hypothetical protein;protein_id=OAR21568.1;transl_table=11
LYPH01000011.1	Genbank	gene	61913	63019	.	-	.	ID=gene-A8144_05495;Name=A8144_05495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05495
LYPH01000011.1	Protein Homology	CDS	61913	63019	.	-	0	ID=cds-OAR21569.1;Parent=gene-A8144_05495;Dbxref=NCBI_GP:OAR21569.1;Name=OAR21569.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019830626.1;locus_tag=A8144_05495;product=branched-chain amino acid aminotransferase;protein_id=OAR21569.1;transl_table=11
LYPH01000011.1	Genbank	gene	63076	64179	.	-	.	ID=gene-A8144_05500;Name=A8144_05500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05500
LYPH01000011.1	Protein Homology	CDS	63076	64179	.	-	0	ID=cds-OAR21570.1;Parent=gene-A8144_05500;Dbxref=NCBI_GP:OAR21570.1;Name=OAR21570.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:A0QEZ6.1;locus_tag=A8144_05500;product=glycine cleavage system protein T;protein_id=OAR21570.1;transl_table=11
LYPH01000011.1	Genbank	gene	64346	65914	.	+	.	ID=gene-A8144_05505;Name=A8144_05505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05505
LYPH01000011.1	Protein Homology	CDS	64346	65914	.	+	0	ID=cds-OAR21571.1;Parent=gene-A8144_05505;Dbxref=NCBI_GP:OAR21571.1;Name=OAR21571.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:B2HGY2.1;locus_tag=A8144_05505;product=leucyl aminopeptidase;protein_id=OAR21571.1;transl_table=11
LYPH01000011.1	Genbank	gene	65985	66299	.	-	.	ID=gene-A8144_05510;Name=A8144_05510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05510
LYPH01000011.1	Protein Homology	CDS	65985	66299	.	-	0	ID=cds-OAR21572.1;Parent=gene-A8144_05510;Dbxref=NCBI_GP:OAR21572.1;Name=OAR21572.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907975.1;locus_tag=A8144_05510;product=hypothetical protein;protein_id=OAR21572.1;transl_table=11
LYPH01000011.1	Genbank	gene	66457	68247	.	-	.	ID=gene-A8144_05515;Name=A8144_05515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05515
LYPH01000011.1	Protein Homology	CDS	66457	68247	.	-	0	ID=cds-OAR21573.1;Parent=gene-A8144_05515;Dbxref=NCBI_GP:OAR21573.1;Name=OAR21573.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014384548.1;locus_tag=A8144_05515;product=short chain dehydrogenase;protein_id=OAR21573.1;transl_table=11
LYPH01000011.1	Genbank	gene	68487	70079	.	+	.	ID=gene-A8144_05520;Name=A8144_05520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05520
LYPH01000011.1	Protein Homology	CDS	68487	70079	.	+	0	ID=cds-OAR21574.1;Parent=gene-A8144_05520;Dbxref=NCBI_GP:OAR21574.1;Name=OAR21574.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907973.1;locus_tag=A8144_05520;product=2-oxoglutarate dehydrogenase%2C E2 component%2C dihydrolipoamide succinyltransferase;protein_id=OAR21574.1;transl_table=11
LYPH01000011.1	Genbank	gene	70095	71018	.	+	.	ID=gene-A8144_05525;Name=A8144_05525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05525
LYPH01000011.1	Protein Homology	CDS	70095	71018	.	+	0	ID=cds-OAR21575.1;Parent=gene-A8144_05525;Dbxref=NCBI_GP:OAR21575.1;Name=OAR21575.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O32960.1;locus_tag=A8144_05525;product=TIGR01777 family protein;protein_id=OAR21575.1;transl_table=11
LYPH01000011.1	Genbank	gene	71083	71790	.	+	.	ID=gene-A8144_05530;Name=A8144_05530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05530
LYPH01000011.1	Protein Homology	CDS	71083	71790	.	+	0	ID=cds-OAR21576.1;Parent=gene-A8144_05530;Dbxref=NCBI_GP:OAR21576.1;Name=OAR21576.1;Note=lipoyl/octanoyltransferase%3B catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O32961.1;locus_tag=A8144_05530;product=lipoate-protein ligase B;protein_id=OAR21576.1;transl_table=11
LYPH01000011.1	Genbank	gene	71787	72731	.	+	.	ID=gene-A8144_05535;Name=A8144_05535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05535
LYPH01000011.1	Protein Homology	CDS	71787	72731	.	+	0	ID=cds-OAR21577.1;Parent=gene-A8144_05535;Dbxref=NCBI_GP:OAR21577.1;Name=OAR21577.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O32962.1;locus_tag=A8144_05535;product=lipoyl synthase;protein_id=OAR21577.1;transl_table=11
LYPH01000011.1	Genbank	gene	72758	73510	.	+	.	ID=gene-A8144_05540;Name=A8144_05540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05540
LYPH01000011.1	Protein Homology	CDS	72758	73510	.	+	0	ID=cds-OAR21578.1;Parent=gene-A8144_05540;Dbxref=NCBI_GP:OAR21578.1;Name=OAR21578.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014816447.1;locus_tag=A8144_05540;product=hypothetical protein;protein_id=OAR21578.1;transl_table=11
##sequence-region LYPH01000012.1 1 1071
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000012.1	Genbank	region	1	1071	.	+	.	ID=LYPH01000012.1:1..1071;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
##sequence-region LYPH01000013.1 1 787
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000013.1	Genbank	region	1	787	.	+	.	ID=LYPH01000013.1:1..787;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
##sequence-region LYPH01000014.1 1 71856
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000014.1	Genbank	region	1	71856	.	+	.	ID=LYPH01000014.1:1..71856;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000014.1	Genbank	gene	12	1121	.	+	.	ID=gene-A8144_05545;Name=A8144_05545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05545
LYPH01000014.1	Protein Homology	CDS	12	1121	.	+	0	ID=cds-OAR21482.1;Parent=gene-A8144_05545;Dbxref=NCBI_GP:OAR21482.1;Name=OAR21482.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q57240.1;locus_tag=A8144_05545;product=inositol 1-phosphate synthase;protein_id=OAR21482.1;transl_table=11
LYPH01000014.1	Genbank	gene	1203	2792	.	-	.	ID=gene-A8144_05550;Name=A8144_05550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05550
LYPH01000014.1	Protein Homology	CDS	1203	2792	.	-	0	ID=cds-OAR21517.1;Parent=gene-A8144_05550;Dbxref=NCBI_GP:OAR21517.1;Name=OAR21517.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46810.2;locus_tag=A8144_05550;product=glutamine-hydrolyzing GMP synthase;protein_id=OAR21517.1;transl_table=11
LYPH01000014.1	Genbank	gene	3408	3920	.	+	.	ID=gene-A8144_05555;Name=A8144_05555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05555
LYPH01000014.1	Protein Homology	CDS	3408	3920	.	+	0	ID=cds-OAR21483.1;Parent=gene-A8144_05555;Dbxref=NCBI_GP:OAR21483.1;Name=OAR21483.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907706.1;locus_tag=A8144_05555;product=hypothetical protein;protein_id=OAR21483.1;transl_table=11
LYPH01000014.1	Genbank	gene	4395	5180	.	+	.	ID=gene-A8144_05560;Name=A8144_05560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05560
LYPH01000014.1	Protein Homology	CDS	4395	5180	.	+	0	ID=cds-OAR21484.1;Parent=gene-A8144_05560;Dbxref=NCBI_GP:OAR21484.1;Name=OAR21484.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49741.1;locus_tag=A8144_05560;product=hypothetical protein;protein_id=OAR21484.1;transl_table=11
LYPH01000014.1	Genbank	gene	5194	7572	.	+	.	ID=gene-A8144_05565;Name=A8144_05565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05565
LYPH01000014.1	Protein Homology	CDS	5194	7572	.	+	0	ID=cds-OAR21485.1;Parent=gene-A8144_05565;Dbxref=NCBI_GP:OAR21485.1;Name=OAR21485.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49736.1;locus_tag=A8144_05565;product=glycosyl hydrolase;protein_id=OAR21485.1;transl_table=11
LYPH01000014.1	Genbank	pseudogene	7556	8061	.	-	.	ID=gene-A8144_05570;Name=A8144_05570;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05570;pseudo=true
LYPH01000014.1	Protein Homology	CDS	7556	8061	.	-	0	ID=cds-A8144_05570;Parent=gene-A8144_05570;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011726021.1;locus_tag=A8144_05570;product=TetR family transcriptional regulator;pseudo=true;transl_table=11
LYPH01000014.1	Genbank	gene	8675	10384	.	-	.	ID=gene-A8144_05575;Name=A8144_05575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05575
LYPH01000014.1	Protein Homology	CDS	8675	10384	.	-	0	ID=cds-OAR21518.1;Parent=gene-A8144_05575;Dbxref=NCBI_GP:OAR21518.1;Name=OAR21518.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907703.1;locus_tag=A8144_05575;product=cholesterol oxidase;protein_id=OAR21518.1;transl_table=11
LYPH01000014.1	Genbank	gene	10449	11576	.	-	.	ID=gene-A8144_05580;Name=A8144_05580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05580
LYPH01000014.1	Protein Homology	CDS	10449	11576	.	-	0	ID=cds-OAR21486.1;Parent=gene-A8144_05580;Dbxref=NCBI_GP:OAR21486.1;Name=OAR21486.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49721.1;locus_tag=A8144_05580;product=inosine 5-monophosphate dehydrogenase;protein_id=OAR21486.1;transl_table=11
LYPH01000014.1	Genbank	gene	11585	13174	.	-	.	ID=gene-A8144_05585;Name=A8144_05585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05585
LYPH01000014.1	Protein Homology	CDS	11585	13174	.	-	0	ID=cds-OAR21487.1;Parent=gene-A8144_05585;Dbxref=NCBI_GP:OAR21487.1;Name=OAR21487.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007773415.1;locus_tag=A8144_05585;product=IMP dehydrogenase;protein_id=OAR21487.1;transl_table=11
LYPH01000014.1	Genbank	gene	13329	13742	.	+	.	ID=gene-A8144_05590;Name=A8144_05590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05590
LYPH01000014.1	Protein Homology	CDS	13329	13742	.	+	0	ID=cds-OAR21488.1;Parent=gene-A8144_05590;Dbxref=NCBI_GP:OAR21488.1;Name=OAR21488.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014942861.1;locus_tag=A8144_05590;product=hypothetical protein;protein_id=OAR21488.1;transl_table=11
LYPH01000014.1	Genbank	gene	14670	14855	.	-	.	ID=gene-A8144_05595;Name=A8144_05595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05595
LYPH01000014.1	GeneMarkS+	CDS	14670	14855	.	-	0	ID=cds-OAR21489.1;Parent=gene-A8144_05595;Dbxref=NCBI_GP:OAR21489.1;Name=OAR21489.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05595;product=hypothetical protein;protein_id=OAR21489.1;transl_table=11
LYPH01000014.1	Genbank	gene	15225	15404	.	+	.	ID=gene-A8144_05600;Name=A8144_05600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05600
LYPH01000014.1	GeneMarkS+	CDS	15225	15404	.	+	0	ID=cds-OAR21490.1;Parent=gene-A8144_05600;Dbxref=NCBI_GP:OAR21490.1;Name=OAR21490.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05600;product=hypothetical protein;protein_id=OAR21490.1;transl_table=11
LYPH01000014.1	Genbank	pseudogene	15877	16391	.	-	.	ID=gene-A8144_05605;Name=A8144_05605;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05605;pseudo=true
LYPH01000014.1	Protein Homology	CDS	15877	16391	.	-	0	ID=cds-A8144_05605;Parent=gene-A8144_05605;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014584915.1;locus_tag=A8144_05605;product=RNA polymerase subunit sigma;pseudo=true;transl_table=11
LYPH01000014.1	Genbank	gene	16550	17395	.	-	.	ID=gene-A8144_05610;Name=A8144_05610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05610
LYPH01000014.1	Protein Homology	CDS	16550	17395	.	-	0	ID=cds-OAR21491.1;Parent=gene-A8144_05610;Dbxref=NCBI_GP:OAR21491.1;Name=OAR21491.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907699.1;locus_tag=A8144_05610;product=hypothetical protein;protein_id=OAR21491.1;transl_table=11
LYPH01000014.1	Genbank	gene	17756	18064	.	+	.	ID=gene-A8144_05615;Name=A8144_05615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05615
LYPH01000014.1	Protein Homology	CDS	17756	18064	.	+	0	ID=cds-OAR21519.1;Parent=gene-A8144_05615;Dbxref=NCBI_GP:OAR21519.1;Name=OAR21519.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007773426.1;locus_tag=A8144_05615;product=WhiB family transcriptional regulator;protein_id=OAR21519.1;transl_table=11
LYPH01000014.1	Genbank	gene	18664	20277	.	-	.	ID=gene-A8144_05620;Name=A8144_05620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05620
LYPH01000014.1	Protein Homology	CDS	18664	20277	.	-	0	ID=cds-OAR21492.1;Parent=gene-A8144_05620;Dbxref=NCBI_GP:OAR21492.1;Name=OAR21492.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014383248.1;locus_tag=A8144_05620;product=chaperonin GroL;protein_id=OAR21492.1;transl_table=11
LYPH01000014.1	Genbank	gene	20356	20658	.	-	.	ID=gene-A8144_05625;Name=A8144_05625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05625
LYPH01000014.1	Protein Homology	CDS	20356	20658	.	-	0	ID=cds-OAR21493.1;Parent=gene-A8144_05625;Dbxref=NCBI_GP:OAR21493.1;Name=OAR21493.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:A1T576.1;locus_tag=A8144_05625;product=co-chaperone GroES;protein_id=OAR21493.1;transl_table=11
LYPH01000014.1	Genbank	gene	20940	21995	.	-	.	ID=gene-A8144_05630;Name=A8144_05630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05630
LYPH01000014.1	Protein Homology	CDS	20940	21995	.	-	0	ID=cds-OAR21494.1;Parent=gene-A8144_05630;Dbxref=NCBI_GP:OAR21494.1;Name=OAR21494.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P37969.2;locus_tag=A8144_05630;product=tRNA N6-adenosine(37)-threonylcarbamoyltransferase complex transferase subunit TsaD;protein_id=OAR21494.1;transl_table=11
LYPH01000014.1	Genbank	gene	21992	23071	.	-	.	ID=gene-A8144_05635;Name=A8144_05635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05635
LYPH01000014.1	Protein Homology	CDS	21992	23071	.	-	0	ID=cds-OAR21495.1;Parent=gene-A8144_05635;Dbxref=NCBI_GP:OAR21495.1;Name=OAR21495.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49857.1;locus_tag=A8144_05635;product=ribosomal-protein-alanine acetyltransferase;protein_id=OAR21495.1;transl_table=11
LYPH01000014.1	Genbank	gene	23068	23553	.	-	.	ID=gene-A8144_05640;Name=A8144_05640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05640
LYPH01000014.1	Protein Homology	CDS	23068	23553	.	-	0	ID=cds-OAR21496.1;Parent=gene-A8144_05640;Dbxref=NCBI_GP:OAR21496.1;Name=OAR21496.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49864.1;locus_tag=A8144_05640;product=tRNA (N6-adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase TsaE;protein_id=OAR21496.1;transl_table=11
LYPH01000014.1	Genbank	gene	23546	24547	.	-	.	ID=gene-A8144_05645;Name=A8144_05645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05645
LYPH01000014.1	Protein Homology	CDS	23546	24547	.	-	0	ID=cds-OAR21497.1;Parent=gene-A8144_05645;Dbxref=NCBI_GP:OAR21497.1;Name=OAR21497.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907692.1;locus_tag=A8144_05645;product=hypothetical protein;protein_id=OAR21497.1;transl_table=11
LYPH01000014.1	Genbank	gene	24537	25703	.	-	.	ID=gene-A8144_05650;Name=A8144_05650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05650
LYPH01000014.1	Protein Homology	CDS	24537	25703	.	-	0	ID=cds-OAR21498.1;Parent=gene-A8144_05650;Dbxref=NCBI_GP:OAR21498.1;Name=OAR21498.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P38056.1;locus_tag=A8144_05650;product=alanine racemase;protein_id=OAR21498.1;transl_table=11
LYPH01000014.1	Genbank	pseudogene	25810	27122	.	-	.	ID=gene-A8144_05655;Name=A8144_05655;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05655;pseudo=true
LYPH01000014.1	Protein Homology	CDS	25810	27122	.	-	0	ID=cds-A8144_05655;Parent=gene-A8144_05655;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003917790.1;locus_tag=A8144_05655;product=glutamate decarboxylase;pseudo=true;transl_table=11
LYPH01000014.1	Genbank	gene	27212	28633	.	-	.	ID=gene-A8144_05660;Name=A8144_05660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05660
LYPH01000014.1	Protein Homology	CDS	27212	28633	.	-	0	ID=cds-OAR21499.1;Parent=gene-A8144_05660;Dbxref=NCBI_GP:OAR21499.1;Name=OAR21499.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011726037.1;locus_tag=A8144_05660;product=bifunctional ADP-dependent (S)-NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase;protein_id=OAR21499.1;transl_table=11
LYPH01000014.1	Genbank	gene	28979	30856	.	-	.	ID=gene-A8144_05665;Name=A8144_05665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05665
LYPH01000014.1	Protein Homology	CDS	28979	30856	.	-	0	ID=cds-OAR21500.1;Parent=gene-A8144_05665;Dbxref=NCBI_GP:OAR21500.1;Name=OAR21500.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_006245199.1;locus_tag=A8144_05665;product=glutamine--fructose-6-phosphate aminotransferase;protein_id=OAR21500.1;transl_table=11
LYPH01000014.1	Genbank	gene	31039	31890	.	+	.	ID=gene-A8144_05670;Name=A8144_05670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05670
LYPH01000014.1	Protein Homology	CDS	31039	31890	.	+	0	ID=cds-OAR21520.1;Parent=gene-A8144_05670;Dbxref=NCBI_GP:OAR21520.1;Name=OAR21520.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009952461.1;locus_tag=A8144_05670;product=hypothetical protein;protein_id=OAR21520.1;transl_table=11
LYPH01000014.1	Genbank	gene	32294	32650	.	+	.	ID=gene-A8144_05675;Name=A8144_05675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05675
LYPH01000014.1	Protein Homology	CDS	32294	32650	.	+	0	ID=cds-OAR21521.1;Parent=gene-A8144_05675;Dbxref=NCBI_GP:OAR21521.1;Name=OAR21521.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907687.1;locus_tag=A8144_05675;product=hypothetical protein;protein_id=OAR21521.1;transl_table=11
LYPH01000014.1	Genbank	gene	33182	33376	.	-	.	ID=gene-A8144_05680;Name=A8144_05680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05680
LYPH01000014.1	GeneMarkS+	CDS	33182	33376	.	-	0	ID=cds-OAR21501.1;Parent=gene-A8144_05680;Dbxref=NCBI_GP:OAR21501.1;Name=OAR21501.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05680;product=hypothetical protein;protein_id=OAR21501.1;transl_table=11
LYPH01000014.1	Genbank	gene	33622	33858	.	-	.	ID=gene-A8144_05685;Name=A8144_05685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05685
LYPH01000014.1	GeneMarkS+	CDS	33622	33858	.	-	0	ID=cds-OAR21502.1;Parent=gene-A8144_05685;Dbxref=NCBI_GP:OAR21502.1;Name=OAR21502.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05685;product=hypothetical protein;protein_id=OAR21502.1;transl_table=11
LYPH01000014.1	Genbank	gene	34452	35843	.	-	.	ID=gene-A8144_05690;Name=A8144_05690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05690
LYPH01000014.1	Protein Homology	CDS	34452	35843	.	-	0	ID=cds-OAR21503.1;Parent=gene-A8144_05690;Dbxref=NCBI_GP:OAR21503.1;Name=OAR21503.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49869.1;locus_tag=A8144_05690;product=phosphoglucosamine mutase;protein_id=OAR21503.1;transl_table=11
LYPH01000014.1	Genbank	gene	35950	36411	.	-	.	ID=gene-A8144_05695;Name=A8144_05695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05695
LYPH01000014.1	Protein Homology	CDS	35950	36411	.	-	0	ID=cds-OAR21504.1;Parent=gene-A8144_05695;Dbxref=NCBI_GP:OAR21504.1;Name=OAR21504.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P40828.1;locus_tag=A8144_05695;product=30S ribosomal protein S9;protein_id=OAR21504.1;transl_table=11
LYPH01000014.1	Genbank	gene	36408	36851	.	-	.	ID=gene-A8144_05700;Name=A8144_05700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05700
LYPH01000014.1	Protein Homology	CDS	36408	36851	.	-	0	ID=cds-OAR21505.1;Parent=gene-A8144_05700;Dbxref=NCBI_GP:OAR21505.1;Name=OAR21505.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014814355.1;locus_tag=A8144_05700;product=50S ribosomal protein L13;protein_id=OAR21505.1;transl_table=11
LYPH01000014.1	Genbank	gene	37103	37417	.	-	.	ID=gene-A8144_05705;Name=A8144_05705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05705
LYPH01000014.1	Protein Homology	CDS	37103	37417	.	-	0	ID=cds-OAR21506.1;Parent=gene-A8144_05705;Dbxref=NCBI_GP:OAR21506.1;Name=OAR21506.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907683.1;locus_tag=A8144_05705;product=hypothetical protein;protein_id=OAR21506.1;transl_table=11
LYPH01000014.1	Genbank	pseudogene	39011	39760	.	-	.	ID=gene-A8144_05710;Name=A8144_05710;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05710;pseudo=true
LYPH01000014.1	Protein Homology	CDS	39011	39760	.	-	0	ID=cds-A8144_05710;Parent=gene-A8144_05710;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011730881.1;locus_tag=A8144_05710;product=ABC transporter permease;pseudo=true;transl_table=11
LYPH01000014.1	Genbank	pseudogene	39985	40878	.	-	.	ID=gene-A8144_05715;Name=A8144_05715;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05715;pseudo=true
LYPH01000014.1	Protein Homology	CDS	39985	40878	.	-	0	ID=cds-A8144_05715;Parent=gene-A8144_05715;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011723686.1;locus_tag=A8144_05715;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000014.1	Genbank	pseudogene	41411	42590	.	+	.	ID=gene-A8144_05720;Name=A8144_05720;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05720;pseudo=true
LYPH01000014.1	Protein Homology	CDS	41411	42590	.	+	0	ID=cds-A8144_05720;Parent=gene-A8144_05720;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011857109.1;locus_tag=A8144_05720;product=acyl-CoA dehydrogenase;pseudo=true;transl_table=11
LYPH01000014.1	Genbank	pseudogene	42571	43628	.	+	.	ID=gene-A8144_05725;Name=A8144_05725;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05725;pseudo=true
LYPH01000014.1	Protein Homology	CDS	42571	43628	.	+	0	ID=cds-A8144_05725;Parent=gene-A8144_05725;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014210733.1;locus_tag=A8144_05725;product=acyl-CoA dehydrogenase;pseudo=true;transl_table=11
LYPH01000014.1	Genbank	gene	43718	44047	.	-	.	ID=gene-A8144_05730;Name=A8144_05730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05730
LYPH01000014.1	GeneMarkS+	CDS	43718	44047	.	-	0	ID=cds-OAR21507.1;Parent=gene-A8144_05730;Dbxref=NCBI_GP:OAR21507.1;Name=OAR21507.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05730;product=hypothetical protein;protein_id=OAR21507.1;transl_table=11
LYPH01000014.1	Genbank	gene	44874	46421	.	-	.	ID=gene-A8144_05735;Name=A8144_05735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05735
LYPH01000014.1	Protein Homology	CDS	44874	46421	.	-	0	ID=cds-OAR21508.1;Parent=gene-A8144_05735;Dbxref=NCBI_GP:OAR21508.1;Name=OAR21508.1;Note=thiamine-pyrophosphate requiring enzyme;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014379046.1;locus_tag=A8144_05735;product=hypothetical protein;protein_id=OAR21508.1;transl_table=11
LYPH01000014.1	Genbank	pseudogene	46418	47226	.	-	.	ID=gene-A8144_05740;Name=A8144_05740;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05740;pseudo=true
LYPH01000014.1	Protein Homology	CDS	46418	47226	.	-	0	ID=cds-A8144_05740;Parent=gene-A8144_05740;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007166449.1;locus_tag=A8144_05740;product=amidohydrolase;pseudo=true;transl_table=11
LYPH01000014.1	Genbank	pseudogene	48094	48545	.	-	.	ID=gene-A8144_05745;Name=A8144_05745;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05745;pseudo=true
LYPH01000014.1	Protein Homology	CDS	48094	48545	.	-	0	ID=cds-A8144_05745;Parent=gene-A8144_05745;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003909939.1;locus_tag=A8144_05745;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000014.1	Genbank	gene	48733	48939	.	-	.	ID=gene-A8144_05750;Name=A8144_05750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05750
LYPH01000014.1	GeneMarkS+	CDS	48733	48939	.	-	0	ID=cds-OAR21509.1;Parent=gene-A8144_05750;Dbxref=NCBI_GP:OAR21509.1;Name=OAR21509.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05750;product=hypothetical protein;protein_id=OAR21509.1;transl_table=11
LYPH01000014.1	Genbank	pseudogene	49110	49703	.	+	.	ID=gene-A8144_05755;Name=A8144_05755;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05755;pseudo=true
LYPH01000014.1	Protein Homology	CDS	49110	49703	.	+	0	ID=cds-A8144_05755;Parent=gene-A8144_05755;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020726754.1;locus_tag=A8144_05755;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000014.1	Genbank	gene	50738	50938	.	+	.	ID=gene-A8144_05760;Name=A8144_05760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05760
LYPH01000014.1	GeneMarkS+	CDS	50738	50938	.	+	0	ID=cds-OAR21510.1;Parent=gene-A8144_05760;Dbxref=NCBI_GP:OAR21510.1;Name=OAR21510.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05760;product=hypothetical protein;protein_id=OAR21510.1;transl_table=11
LYPH01000014.1	Genbank	gene	54521	55552	.	-	.	ID=gene-A8144_05765;Name=A8144_05765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05765
LYPH01000014.1	Protein Homology	CDS	54521	55552	.	-	0	ID=cds-OAR21511.1;Parent=gene-A8144_05765;Dbxref=NCBI_GP:OAR21511.1;Name=OAR21511.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011723677.1;locus_tag=A8144_05765;product=LLM class F420-dependent oxidoreductase;protein_id=OAR21511.1;transl_table=11
LYPH01000014.1	Genbank	pseudogene	55653	56625	.	+	.	ID=gene-A8144_05770;Name=A8144_05770;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05770;pseudo=true
LYPH01000014.1	Protein Homology	CDS	55653	56625	.	+	0	ID=cds-A8144_05770;Parent=gene-A8144_05770;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003875701.1;locus_tag=A8144_05770;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000014.1	Genbank	pseudogene	57112	58257	.	+	.	ID=gene-A8144_05775;Name=A8144_05775;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05775;pseudo=true
LYPH01000014.1	Protein Homology	CDS	57112	58257	.	+	0	ID=cds-A8144_05775;Parent=gene-A8144_05775;Note=Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase%2C catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation%3B frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011562013.1;locus_tag=A8144_05775;product=acetyl-CoA acetyltransferase;pseudo=true;transl_table=11
LYPH01000014.1	Genbank	gene	58768	58968	.	-	.	ID=gene-A8144_05780;Name=A8144_05780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05780
LYPH01000014.1	GeneMarkS+	CDS	58768	58968	.	-	0	ID=cds-OAR21512.1;Parent=gene-A8144_05780;Dbxref=NCBI_GP:OAR21512.1;Name=OAR21512.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05780;product=hypothetical protein;protein_id=OAR21512.1;transl_table=11
LYPH01000014.1	Genbank	pseudogene	60548	61534	.	+	.	ID=gene-A8144_05785;Name=A8144_05785;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05785;pseudo=true
LYPH01000014.1	Protein Homology	CDS	60548	61534	.	+	0	ID=cds-A8144_05785;Parent=gene-A8144_05785;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015294529.1;locus_tag=A8144_05785;product=3-ketosteroid-9-alpha-hydroxylase;pseudo=true;transl_table=11
LYPH01000014.1	Genbank	pseudogene	61629	62111	.	+	.	ID=gene-A8144_05790;Name=A8144_05790;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05790;pseudo=true
LYPH01000014.1	Protein Homology	CDS	61629	62111	.	+	0	ID=cds-A8144_05790;Parent=gene-A8144_05790;Note=internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003877119.1;locus_tag=A8144_05790;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000014.1	Genbank	pseudogene	62337	64203	.	-	.	ID=gene-A8144_05795;Name=A8144_05795;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05795;pseudo=true
LYPH01000014.1	Protein Homology	CDS	62337	64203	.	-	0	ID=cds-A8144_05795;Parent=gene-A8144_05795;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014383756.1;locus_tag=A8144_05795;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000014.1	Genbank	pseudogene	64521	65090	.	+	.	ID=gene-A8144_05800;Name=A8144_05800;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05800;pseudo=true
LYPH01000014.1	Protein Homology	CDS	64521	65090	.	+	0	ID=cds-A8144_05800;Parent=gene-A8144_05800;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008263559.1;locus_tag=A8144_05800;product=transcriptional regulator;pseudo=true;transl_table=11
LYPH01000014.1	Genbank	gene	66364	67272	.	+	.	ID=gene-A8144_05805;Name=A8144_05805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05805
LYPH01000014.1	Protein Homology	CDS	66364	67272	.	+	0	ID=cds-OAR21522.1;Parent=gene-A8144_05805;Dbxref=NCBI_GP:OAR21522.1;Name=OAR21522.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907680.1;locus_tag=A8144_05805;product=ABC transporter substrate-binding protein;protein_id=OAR21522.1;transl_table=11
LYPH01000014.1	Genbank	gene	67281	68108	.	+	.	ID=gene-A8144_05810;Name=A8144_05810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05810
LYPH01000014.1	Protein Homology	CDS	67281	68108	.	+	0	ID=cds-OAR21513.1;Parent=gene-A8144_05810;Dbxref=NCBI_GP:OAR21513.1;Name=OAR21513.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907679.1;locus_tag=A8144_05810;product=ABC transporter ATP-binding protein;protein_id=OAR21513.1;transl_table=11
LYPH01000014.1	Genbank	gene	68108	68968	.	+	.	ID=gene-A8144_05815;Name=A8144_05815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05815
LYPH01000014.1	Protein Homology	CDS	68108	68968	.	+	0	ID=cds-OAR21514.1;Parent=gene-A8144_05815;Dbxref=NCBI_GP:OAR21514.1;Name=OAR21514.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907678.1;locus_tag=A8144_05815;product=helicase;protein_id=OAR21514.1;transl_table=11
LYPH01000014.1	Genbank	gene	69899	70657	.	+	.	ID=gene-A8144_05820;Name=A8144_05820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05820
LYPH01000014.1	Protein Homology	CDS	69899	70657	.	+	0	ID=cds-OAR21515.1;Parent=gene-A8144_05820;Dbxref=NCBI_GP:OAR21515.1;Name=OAR21515.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014379003.1;locus_tag=A8144_05820;product=hypothetical protein;protein_id=OAR21515.1;transl_table=11
LYPH01000014.1	Genbank	gene	70833	71228	.	-	.	ID=gene-A8144_05825;Name=A8144_05825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05825
LYPH01000014.1	GeneMarkS+	CDS	70833	71228	.	-	0	ID=cds-OAR21516.1;Parent=gene-A8144_05825;Dbxref=NCBI_GP:OAR21516.1;Name=OAR21516.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05825;product=hypothetical protein;protein_id=OAR21516.1;transl_table=11
##sequence-region LYPH01000015.1 1 70815
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000015.1	Genbank	region	1	70815	.	+	.	ID=LYPH01000015.1:1..70815;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000015.1	Genbank	pseudogene	993	1723	.	-	.	ID=gene-A8144_05830;Name=A8144_05830;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05830;pseudo=true
LYPH01000015.1	Protein Homology	CDS	993	1723	.	-	0	ID=cds-A8144_05830;Parent=gene-A8144_05830;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019969365.1;locus_tag=A8144_05830;product=methyltransferase;pseudo=true;transl_table=11
LYPH01000015.1	Genbank	gene	1764	2459	.	-	.	ID=gene-A8144_05835;Name=A8144_05835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05835
LYPH01000015.1	Protein Homology	CDS	1764	2459	.	-	0	ID=cds-OAR21433.1;Parent=gene-A8144_05835;Dbxref=NCBI_GP:OAR21433.1;Name=OAR21433.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908095.1;locus_tag=A8144_05835;product=hypothetical protein;protein_id=OAR21433.1;transl_table=11
LYPH01000015.1	Genbank	gene	2465	3820	.	-	.	ID=gene-A8144_05840;Name=A8144_05840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05840
LYPH01000015.1	Protein Homology	CDS	2465	3820	.	-	0	ID=cds-OAR21434.1;Parent=gene-A8144_05840;Dbxref=NCBI_GP:OAR21434.1;Name=OAR21434.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q50008.1;locus_tag=A8144_05840;product=protoporphyrinogen oxidase;protein_id=OAR21434.1;transl_table=11
LYPH01000015.1	Genbank	gene	3817	4890	.	-	.	ID=gene-A8144_05845;Name=A8144_05845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05845
LYPH01000015.1	Protein Homology	CDS	3817	4890	.	-	0	ID=cds-OAR21435.1;Parent=gene-A8144_05845;Dbxref=NCBI_GP:OAR21435.1;Name=OAR21435.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46809.2;locus_tag=A8144_05845;product=uroporphyrinogen decarboxylase;protein_id=OAR21435.1;transl_table=11
LYPH01000015.1	Genbank	gene	5988	6569	.	+	.	ID=gene-A8144_05850;Name=A8144_05850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05850
LYPH01000015.1	Protein Homology	CDS	5988	6569	.	+	0	ID=cds-OAR21473.1;Parent=gene-A8144_05850;Dbxref=NCBI_GP:OAR21473.1;Name=OAR21473.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015355345.1;locus_tag=A8144_05850;product=hypothetical protein;protein_id=OAR21473.1;transl_table=11
LYPH01000015.1	Genbank	gene	6571	7860	.	+	.	ID=gene-A8144_05855;Name=A8144_05855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05855
LYPH01000015.1	Protein Homology	CDS	6571	7860	.	+	0	ID=cds-OAR21436.1;Parent=gene-A8144_05855;Dbxref=NCBI_GP:OAR21436.1;Name=OAR21436.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908091.1;locus_tag=A8144_05855;product=3'-5' exonuclease;protein_id=OAR21436.1;transl_table=11
LYPH01000015.1	Genbank	gene	9961	11892	.	-	.	ID=gene-A8144_05860;Name=A8144_05860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05860
LYPH01000015.1	Protein Homology	CDS	9961	11892	.	-	0	ID=cds-OAR21474.1;Parent=gene-A8144_05860;Dbxref=NCBI_GP:OAR21474.1;Name=OAR21474.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q50000.2;locus_tag=A8144_05860;product=1-deoxy-D-xylulose-5-phosphate synthase;protein_id=OAR21474.1;transl_table=11
LYPH01000015.1	Genbank	gene	12085	12528	.	+	.	ID=gene-A8144_05865;Name=A8144_05865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05865
LYPH01000015.1	Protein Homology	CDS	12085	12528	.	+	0	ID=cds-OAR21437.1;Parent=gene-A8144_05865;Dbxref=NCBI_GP:OAR21437.1;Name=OAR21437.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014815436.1;locus_tag=A8144_05865;product=hypothetical protein;protein_id=OAR21437.1;transl_table=11
LYPH01000015.1	Genbank	gene	12581	13870	.	+	.	ID=gene-A8144_05870;Name=A8144_05870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05870
LYPH01000015.1	Protein Homology	CDS	12581	13870	.	+	0	ID=cds-OAR21438.1;Parent=gene-A8144_05870;Dbxref=NCBI_GP:OAR21438.1;Name=OAR21438.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46838.2;locus_tag=A8144_05870;product=hypothetical protein;protein_id=OAR21438.1;transl_table=11
LYPH01000015.1	Genbank	pseudogene	13881	14580	.	-	.	ID=gene-A8144_05875;Name=A8144_05875;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05875;pseudo=true
LYPH01000015.1	Protein Homology	CDS	13881	14580	.	-	0	ID=cds-A8144_05875;Parent=gene-A8144_05875;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020728419.1;locus_tag=A8144_05875;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000015.1	Genbank	gene	14825	15016	.	-	.	ID=gene-A8144_05880;Name=A8144_05880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05880
LYPH01000015.1	GeneMarkS+	CDS	14825	15016	.	-	0	ID=cds-OAR21439.1;Parent=gene-A8144_05880;Dbxref=NCBI_GP:OAR21439.1;Name=OAR21439.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_05880;product=hypothetical protein;protein_id=OAR21439.1;transl_table=11
LYPH01000015.1	Genbank	gene	16708	17406	.	+	.	ID=gene-A8144_05885;Name=A8144_05885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05885
LYPH01000015.1	Protein Homology	CDS	16708	17406	.	+	0	ID=cds-OAR21440.1;Parent=gene-A8144_05885;Dbxref=NCBI_GP:OAR21440.1;Name=OAR21440.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908087.1;locus_tag=A8144_05885;product=hypothetical protein;protein_id=OAR21440.1;transl_table=11
LYPH01000015.1	Genbank	gene	17451	18221	.	-	.	ID=gene-A8144_05890;Name=A8144_05890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05890
LYPH01000015.1	Protein Homology	CDS	17451	18221	.	-	0	ID=cds-OAR21475.1;Parent=gene-A8144_05890;Dbxref=NCBI_GP:OAR21475.1;Name=OAR21475.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009955727.1;locus_tag=A8144_05890;product=hypothetical protein;protein_id=OAR21475.1;transl_table=11
LYPH01000015.1	Genbank	gene	18269	18733	.	-	.	ID=gene-A8144_05895;Name=A8144_05895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05895
LYPH01000015.1	Protein Homology	CDS	18269	18733	.	-	0	ID=cds-OAR21441.1;Parent=gene-A8144_05895;Dbxref=NCBI_GP:OAR21441.1;Name=OAR21441.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49992.3;locus_tag=A8144_05895;product=deoxyuridine 5'-triphosphate nucleotidohydrolase;protein_id=OAR21441.1;transl_table=11
LYPH01000015.1	Genbank	gene	18759	19232	.	+	.	ID=gene-A8144_05900;Name=A8144_05900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05900
LYPH01000015.1	Protein Homology	CDS	18759	19232	.	+	0	ID=cds-OAR21442.1;Parent=gene-A8144_05900;Dbxref=NCBI_GP:OAR21442.1;Name=OAR21442.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908084.1;locus_tag=A8144_05900;product=hypothetical protein;protein_id=OAR21442.1;transl_table=11
LYPH01000015.1	Genbank	gene	19237	19539	.	-	.	ID=gene-A8144_05905;Name=A8144_05905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05905
LYPH01000015.1	Protein Homology	CDS	19237	19539	.	-	0	ID=cds-OAR21443.1;Parent=gene-A8144_05905;Dbxref=NCBI_GP:OAR21443.1;Name=OAR21443.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005513624.1;locus_tag=A8144_05905;product=dUTPase;protein_id=OAR21443.1;transl_table=11
LYPH01000015.1	Genbank	gene	19735	20385	.	+	.	ID=gene-A8144_05910;Name=A8144_05910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05910
LYPH01000015.1	Protein Homology	CDS	19735	20385	.	+	0	ID=cds-OAR21444.1;Parent=gene-A8144_05910;Dbxref=NCBI_GP:OAR21444.1;Name=OAR21444.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008258545.1;locus_tag=A8144_05910;product=hypothetical protein;protein_id=OAR21444.1;transl_table=11
LYPH01000015.1	Genbank	gene	20389	21264	.	-	.	ID=gene-A8144_05915;Name=A8144_05915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05915
LYPH01000015.1	Protein Homology	CDS	20389	21264	.	-	0	ID=cds-OAR21445.1;Parent=gene-A8144_05915;Dbxref=NCBI_GP:OAR21445.1;Name=OAR21445.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46813.1;locus_tag=A8144_05915;product=inositol monophosphatase;protein_id=OAR21445.1;transl_table=11
LYPH01000015.1	Genbank	gene	21366	22187	.	+	.	ID=gene-A8144_05920;Name=A8144_05920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05920
LYPH01000015.1	Protein Homology	CDS	21366	22187	.	+	0	ID=cds-OAR21476.1;Parent=gene-A8144_05920;Dbxref=NCBI_GP:OAR21476.1;Name=OAR21476.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009955735.1;locus_tag=A8144_05920;product=polyphosphate glucokinase;protein_id=OAR21476.1;transl_table=11
LYPH01000015.1	Genbank	gene	22198	23922	.	+	.	ID=gene-A8144_05925;Name=A8144_05925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05925
LYPH01000015.1	Protein Homology	CDS	22198	23922	.	+	0	ID=cds-OAR21446.1;Parent=gene-A8144_05925;Dbxref=NCBI_GP:OAR21446.1;Name=OAR21446.1;Note=sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908079.1;locus_tag=A8144_05925;product=RNA polymerase sigma factor;protein_id=OAR21446.1;transl_table=11
LYPH01000015.1	Genbank	gene	25682	25897	.	+	.	ID=gene-A8144_05930;Name=A8144_05930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05930
LYPH01000015.1	Protein Homology	CDS	25682	25897	.	+	0	ID=cds-OAR21447.1;Parent=gene-A8144_05930;Dbxref=NCBI_GP:OAR21447.1;Name=OAR21447.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908078.1;locus_tag=A8144_05930;product=hypothetical protein;protein_id=OAR21447.1;transl_table=11
LYPH01000015.1	Genbank	gene	25902	26894	.	+	.	ID=gene-A8144_05935;Name=A8144_05935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05935
LYPH01000015.1	Protein Homology	CDS	25902	26894	.	+	0	ID=cds-OAR21448.1;Parent=gene-A8144_05935;Dbxref=NCBI_GP:OAR21448.1;Name=OAR21448.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908077.1;locus_tag=A8144_05935;product=ribonuclease BN;protein_id=OAR21448.1;transl_table=11
LYPH01000015.1	Genbank	gene	26881	27120	.	-	.	ID=gene-A8144_05940;Name=A8144_05940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05940
LYPH01000015.1	Protein Homology	CDS	26881	27120	.	-	0	ID=cds-OAR21449.1;Parent=gene-A8144_05940;Dbxref=NCBI_GP:OAR21449.1;Name=OAR21449.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008258553.1;locus_tag=A8144_05940;product=hypothetical protein;protein_id=OAR21449.1;transl_table=11
LYPH01000015.1	Genbank	gene	27232	27651	.	+	.	ID=gene-A8144_05945;Name=A8144_05945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05945
LYPH01000015.1	Protein Homology	CDS	27232	27651	.	+	0	ID=cds-OAR21450.1;Parent=gene-A8144_05945;Dbxref=NCBI_GP:OAR21450.1;Name=OAR21450.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908075.1;locus_tag=A8144_05945;product=hypothetical protein;protein_id=OAR21450.1;transl_table=11
LYPH01000015.1	Genbank	gene	27818	28777	.	+	.	ID=gene-A8144_05950;Name=A8144_05950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05950
LYPH01000015.1	Protein Homology	CDS	27818	28777	.	+	0	ID=cds-OAR21451.1;Parent=gene-A8144_05950;Dbxref=NCBI_GP:OAR21451.1;Name=OAR21451.1;Note=sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B sigma factors in this cluster are active during stationary phase;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908074.1;locus_tag=A8144_05950;product=RNA polymerase subunit sigma;protein_id=OAR21451.1;transl_table=11
LYPH01000015.1	Genbank	gene	28934	29626	.	+	.	ID=gene-A8144_05955;Name=A8144_05955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05955
LYPH01000015.1	Protein Homology	CDS	28934	29626	.	+	0	ID=cds-OAR21452.1;Parent=gene-A8144_05955;Dbxref=NCBI_GP:OAR21452.1;Name=OAR21452.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003880574.1;locus_tag=A8144_05955;product=dihydrofolate reductase;protein_id=OAR21452.1;transl_table=11
LYPH01000015.1	Genbank	pseudogene	30130	31562	.	+	.	ID=gene-A8144_05960;Name=A8144_05960;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05960;pseudo=true
LYPH01000015.1	Protein Homology	CDS	30130	31562	.	+	0	ID=cds-A8144_05960;Parent=gene-A8144_05960;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012393785.1;locus_tag=A8144_05960;product=NAD(P)(+) transhydrogenase;pseudo=true;transl_table=11
LYPH01000015.1	Genbank	pseudogene	31543	32154	.	-	.	ID=gene-A8144_05965;Name=A8144_05965;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05965;pseudo=true
LYPH01000015.1	Protein Homology	CDS	31543	32154	.	-	0	ID=cds-A8144_05965;Parent=gene-A8144_05965;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020787983.1;locus_tag=A8144_05965;product=trypsin;pseudo=true;transl_table=11
LYPH01000015.1	Genbank	gene	32089	32331	.	+	.	ID=gene-A8144_05970;Name=A8144_05970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05970
LYPH01000015.1	Protein Homology	CDS	32089	32331	.	+	0	ID=cds-OAR21477.1;Parent=gene-A8144_05970;Dbxref=NCBI_GP:OAR21477.1;Name=OAR21477.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908071.1;locus_tag=A8144_05970;product=hypothetical protein;protein_id=OAR21477.1;transl_table=11
LYPH01000015.1	Genbank	gene	32608	33588	.	+	.	ID=gene-A8144_05975;Name=A8144_05975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05975
LYPH01000015.1	Protein Homology	CDS	32608	33588	.	+	0	ID=cds-OAR21453.1;Parent=gene-A8144_05975;Dbxref=NCBI_GP:OAR21453.1;Name=OAR21453.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908070.1;locus_tag=A8144_05975;product=proteasome protein;protein_id=OAR21453.1;transl_table=11
LYPH01000015.1	Genbank	pseudogene	33616	34656	.	+	.	ID=gene-A8144_05980;Name=A8144_05980;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_05980;pseudo=true
LYPH01000015.1	Protein Homology	CDS	33616	34656	.	+	0	ID=cds-A8144_05980;Parent=gene-A8144_05980;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014815405.1;locus_tag=A8144_05980;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000015.1	Genbank	gene	35452	35937	.	-	.	ID=gene-A8144_05985;Name=A8144_05985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05985
LYPH01000015.1	Protein Homology	CDS	35452	35937	.	-	0	ID=cds-OAR21454.1;Parent=gene-A8144_05985;Dbxref=NCBI_GP:OAR21454.1;Name=OAR21454.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009955003.1;locus_tag=A8144_05985;product=fatty acid-binding-like protein;protein_id=OAR21454.1;transl_table=11
LYPH01000015.1	Genbank	gene	35979	36443	.	-	.	ID=gene-A8144_05990;Name=A8144_05990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05990
LYPH01000015.1	Protein Homology	CDS	35979	36443	.	-	0	ID=cds-OAR21455.1;Parent=gene-A8144_05990;Dbxref=NCBI_GP:OAR21455.1;Name=OAR21455.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49844.1;locus_tag=A8144_05990;product=transcriptional regulator NrdR;protein_id=OAR21455.1;transl_table=11
LYPH01000015.1	Genbank	gene	36605	37099	.	-	.	ID=gene-A8144_05995;Name=A8144_05995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_05995
LYPH01000015.1	Protein Homology	CDS	36605	37099	.	-	0	ID=cds-OAR21478.1;Parent=gene-A8144_05995;Dbxref=NCBI_GP:OAR21478.1;Name=OAR21478.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908067.1;locus_tag=A8144_05995;product=hypothetical protein;protein_id=OAR21478.1;transl_table=11
LYPH01000015.1	Genbank	gene	37379	38086	.	+	.	ID=gene-A8144_06000;Name=A8144_06000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06000
LYPH01000015.1	Protein Homology	CDS	37379	38086	.	+	0	ID=cds-OAR21456.1;Parent=gene-A8144_06000;Dbxref=NCBI_GP:OAR21456.1;Name=OAR21456.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:B8ZQU5.1;locus_tag=A8144_06000;product=repressor LexA;protein_id=OAR21456.1;transl_table=11
LYPH01000015.1	Genbank	gene	38125	40188	.	-	.	ID=gene-A8144_06005;Name=A8144_06005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06005
LYPH01000015.1	Protein Homology	CDS	38125	40188	.	-	0	ID=cds-OAR21457.1;Parent=gene-A8144_06005;Dbxref=NCBI_GP:OAR21457.1;Name=OAR21457.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908065.1;locus_tag=A8144_06005;product=hypothetical protein;protein_id=OAR21457.1;transl_table=11
LYPH01000015.1	Genbank	gene	40233	40508	.	+	.	ID=gene-A8144_06010;Name=A8144_06010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06010
LYPH01000015.1	Protein Homology	CDS	40233	40508	.	+	0	ID=cds-OAR21458.1;Parent=gene-A8144_06010;Dbxref=NCBI_GP:OAR21458.1;Name=OAR21458.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908064.1;locus_tag=A8144_06010;product=hypothetical protein;protein_id=OAR21458.1;transl_table=11
LYPH01000015.1	Genbank	gene	42650	42835	.	-	.	ID=gene-A8144_06015;Name=A8144_06015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06015
LYPH01000015.1	GeneMarkS+	CDS	42650	42835	.	-	0	ID=cds-OAR21459.1;Parent=gene-A8144_06015;Dbxref=NCBI_GP:OAR21459.1;Name=OAR21459.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06015;product=hypothetical protein;protein_id=OAR21459.1;transl_table=11
LYPH01000015.1	Genbank	pseudogene	45047	46214	.	-	.	ID=gene-A8144_06020;Name=A8144_06020;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06020;pseudo=true
LYPH01000015.1	Protein Homology	CDS	45047	46214	.	-	0	ID=cds-A8144_06020;Parent=gene-A8144_06020;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019969308.1;locus_tag=A8144_06020;product=acyl-CoA dehydrogenase;pseudo=true;transl_table=11
LYPH01000015.1	Genbank	gene	46371	47837	.	-	.	ID=gene-A8144_06025;Name=A8144_06025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06025
LYPH01000015.1	Protein Homology	CDS	46371	47837	.	-	0	ID=cds-OAR21460.1;Parent=gene-A8144_06025;Dbxref=NCBI_GP:OAR21460.1;Name=OAR21460.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908063.1;locus_tag=A8144_06025;product=GTPase HflX;protein_id=OAR21460.1;transl_table=11
LYPH01000015.1	Genbank	gene	47900	48790	.	-	.	ID=gene-A8144_06030;Name=A8144_06030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06030
LYPH01000015.1	Protein Homology	CDS	47900	48790	.	-	0	ID=cds-OAR21461.1;Parent=gene-A8144_06030;Dbxref=NCBI_GP:OAR21461.1;Name=OAR21461.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46814.1;locus_tag=A8144_06030;product=diaminopimelate epimerase;protein_id=OAR21461.1;transl_table=11
LYPH01000015.1	Genbank	gene	48857	49792	.	-	.	ID=gene-A8144_06035;Name=A8144_06035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06035
LYPH01000015.1	Protein Homology	CDS	48857	49792	.	-	0	ID=cds-OAR21462.1;Parent=gene-A8144_06035;Dbxref=NCBI_GP:OAR21462.1;Name=OAR21462.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46811.1;locus_tag=A8144_06035;product=tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA;protein_id=OAR21462.1;transl_table=11
LYPH01000015.1	Genbank	gene	49789	50487	.	-	.	ID=gene-A8144_06040;Name=A8144_06040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06040
LYPH01000015.1	Protein Homology	CDS	49789	50487	.	-	0	ID=cds-OAR21463.1;Parent=gene-A8144_06040;Dbxref=NCBI_GP:OAR21463.1;Name=OAR21463.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908060.1;locus_tag=A8144_06040;product=hypothetical protein;protein_id=OAR21463.1;transl_table=11
LYPH01000015.1	Genbank	gene	50804	51025	.	-	.	ID=gene-A8144_06045;Name=A8144_06045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06045
LYPH01000015.1	GeneMarkS+	CDS	50804	51025	.	-	0	ID=cds-OAR21464.1;Parent=gene-A8144_06045;Dbxref=NCBI_GP:OAR21464.1;Name=OAR21464.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06045;product=hypothetical protein;protein_id=OAR21464.1;transl_table=11
LYPH01000015.1	Genbank	gene	51503	51904	.	-	.	ID=gene-A8144_06050;Name=A8144_06050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06050
LYPH01000015.1	GeneMarkS+	CDS	51503	51904	.	-	0	ID=cds-OAR21465.1;Parent=gene-A8144_06050;Dbxref=NCBI_GP:OAR21465.1;Name=OAR21465.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06050;product=hypothetical protein;protein_id=OAR21465.1;transl_table=11
LYPH01000015.1	Genbank	pseudogene	53969	55200	.	+	.	ID=gene-A8144_06055;Name=A8144_06055;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06055;pseudo=true
LYPH01000015.1	Protein Homology	CDS	53969	55200	.	+	0	ID=cds-A8144_06055;Parent=gene-A8144_06055;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020787999.1;locus_tag=A8144_06055;product=DNA repair ATPase;pseudo=true;transl_table=11
LYPH01000015.1	Genbank	gene	55197	55826	.	-	.	ID=gene-A8144_06060;Name=A8144_06060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06060
LYPH01000015.1	Protein Homology	CDS	55197	55826	.	-	0	ID=cds-OAR21466.1;Parent=gene-A8144_06060;Dbxref=NCBI_GP:OAR21466.1;Name=OAR21466.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908059.1;locus_tag=A8144_06060;product=hypothetical protein;protein_id=OAR21466.1;transl_table=11
LYPH01000015.1	Genbank	gene	55823	57376	.	-	.	ID=gene-A8144_06065;Name=A8144_06065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06065
LYPH01000015.1	Protein Homology	CDS	55823	57376	.	-	0	ID=cds-OAR21479.1;Parent=gene-A8144_06065;Dbxref=NCBI_GP:OAR21479.1;Name=OAR21479.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49842.2;locus_tag=A8144_06065;product=tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB;protein_id=OAR21479.1;transl_table=11
LYPH01000015.1	Genbank	gene	57435	57950	.	-	.	ID=gene-A8144_06070;Name=A8144_06070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06070
LYPH01000015.1	Protein Homology	CDS	57435	57950	.	-	0	ID=cds-OAR21467.1;Parent=gene-A8144_06070;Dbxref=NCBI_GP:OAR21467.1;Name=OAR21467.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003875211.1;locus_tag=A8144_06070;product=recombination regulator RecX;protein_id=OAR21467.1;transl_table=11
LYPH01000015.1	Genbank	gene	57916	60051	.	-	.	ID=gene-A8144_06075;Name=A8144_06075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06075
LYPH01000015.1	Protein Homology	CDS	57916	60051	.	-	0	ID=cds-OAR21468.1;Parent=gene-A8144_06075;Dbxref=NCBI_GP:OAR21468.1;Name=OAR21468.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019735100.1;locus_tag=A8144_06075;product=recombinase RecA;protein_id=OAR21468.1;transl_table=11
LYPH01000015.1	Genbank	gene	60202	60405	.	-	.	ID=gene-A8144_06080;Name=A8144_06080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06080
LYPH01000015.1	Protein Homology	CDS	60202	60405	.	-	0	ID=cds-OAR21480.1;Parent=gene-A8144_06080;Dbxref=NCBI_GP:OAR21480.1;Name=OAR21480.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908055.1;locus_tag=A8144_06080;product=signal transduction histidine kinase;protein_id=OAR21480.1;transl_table=11
LYPH01000015.1	Genbank	gene	60419	61597	.	-	.	ID=gene-A8144_06085;Name=A8144_06085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06085
LYPH01000015.1	Protein Homology	CDS	60419	61597	.	-	0	ID=cds-OAR21469.1;Parent=gene-A8144_06085;Dbxref=NCBI_GP:OAR21469.1;Name=OAR21469.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908054.1;locus_tag=A8144_06085;product=glycosyl transferase;protein_id=OAR21469.1;transl_table=11
LYPH01000015.1	Genbank	gene	61649	62083	.	+	.	ID=gene-A8144_06090;Name=A8144_06090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06090
LYPH01000015.1	Protein Homology	CDS	61649	62083	.	+	0	ID=cds-OAR21481.1;Parent=gene-A8144_06090;Dbxref=NCBI_GP:OAR21481.1;Name=OAR21481.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009956010.1;locus_tag=A8144_06090;product=limonene-1%2C2-epoxide hydrolase;protein_id=OAR21481.1;transl_table=11
LYPH01000015.1	Genbank	pseudogene	62502	63353	.	-	.	ID=gene-A8144_06095;Name=A8144_06095;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06095;pseudo=true
LYPH01000015.1	Protein Homology	CDS	62502	63353	.	-	0	ID=cds-A8144_06095;Parent=gene-A8144_06095;Note=internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007774974.1;locus_tag=A8144_06095;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000015.1	Genbank	pseudogene	63385	64216	.	-	.	ID=gene-A8144_06100;Name=A8144_06100;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06100;pseudo=true
LYPH01000015.1	Protein Homology	CDS	63385	64216	.	-	0	ID=cds-A8144_06100;Parent=gene-A8144_06100;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014942572.1;locus_tag=A8144_06100;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000015.1	Genbank	gene	64751	65332	.	-	.	ID=gene-A8144_06105;Name=A8144_06105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06105
LYPH01000015.1	Protein Homology	CDS	64751	65332	.	-	0	ID=cds-OAR21470.1;Parent=gene-A8144_06105;Dbxref=NCBI_GP:OAR21470.1;Name=OAR21470.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908052.1;locus_tag=A8144_06105;product=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase;protein_id=OAR21470.1;transl_table=11
LYPH01000015.1	Genbank	gene	65399	65941	.	+	.	ID=gene-A8144_06110;Name=A8144_06110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06110
LYPH01000015.1	Protein Homology	CDS	65399	65941	.	+	0	ID=cds-OAR21471.1;Parent=gene-A8144_06110;Dbxref=NCBI_GP:OAR21471.1;Name=OAR21471.1;Note=catalyzes the conversion of l-glutamate to a-N-acetyl-l-glutamate in arginine biosynthesis;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007171536.1;locus_tag=A8144_06110;product=N-acetylglutamate synthase;protein_id=OAR21471.1;transl_table=11
LYPH01000015.1	Genbank	gene	65951	68611	.	-	.	ID=gene-A8144_06115;Name=A8144_06115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06115
LYPH01000015.1	Protein Homology	CDS	65951	68611	.	-	0	ID=cds-OAR21472.1;Parent=gene-A8144_06115;Dbxref=NCBI_GP:OAR21472.1;Name=OAR21472.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908050.1;locus_tag=A8144_06115;product=cell division protein FtsK;protein_id=OAR21472.1;transl_table=11
LYPH01000015.1	Genbank	pseudogene	69013	69806	.	+	.	ID=gene-A8144_06120;Name=A8144_06120;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06120;pseudo=true
LYPH01000015.1	Protein Homology	CDS	69013	69806	.	+	0	ID=cds-A8144_06120;Parent=gene-A8144_06120;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014213837.1;locus_tag=A8144_06120;product=3-ketoacyl-ACP reductase;pseudo=true;transl_table=11
LYPH01000015.1	Genbank	pseudogene	69887	70648	.	+	.	ID=gene-A8144_06125;Name=A8144_06125;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06125;pseudo=true
LYPH01000015.1	Protein Homology	CDS	69887	70648	.	+	0	ID=cds-A8144_06125;Parent=gene-A8144_06125;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing start and stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003414047.1;locus_tag=A8144_06125;product=methyltransferase;pseudo=true;transl_table=11
##sequence-region LYPH01000016.1 1 67748
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000016.1	Genbank	region	1	67748	.	+	.	ID=LYPH01000016.1:1..67748;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000016.1	Genbank	gene	129	569	.	+	.	ID=gene-A8144_06130;Name=A8144_06130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06130
LYPH01000016.1	GeneMarkS+	CDS	129	569	.	+	0	ID=cds-OAR21379.1;Parent=gene-A8144_06130;Dbxref=NCBI_GP:OAR21379.1;Name=OAR21379.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06130;product=hypothetical protein;protein_id=OAR21379.1;transl_table=11
LYPH01000016.1	Genbank	pseudogene	1101	1873	.	-	.	ID=gene-A8144_06135;Name=A8144_06135;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06135;pseudo=true
LYPH01000016.1	Protein Homology	CDS	1101	1873	.	-	0	ID=cds-A8144_06135;Parent=gene-A8144_06135;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012395971.1;locus_tag=A8144_06135;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000016.1	Genbank	gene	2623	2835	.	-	.	ID=gene-A8144_06140;Name=A8144_06140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06140
LYPH01000016.1	Protein Homology	CDS	2623	2835	.	-	0	ID=cds-OAR21380.1;Parent=gene-A8144_06140;Dbxref=NCBI_GP:OAR21380.1;Name=OAR21380.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907638.1;locus_tag=A8144_06140;product=hypothetical protein;protein_id=OAR21380.1;transl_table=11
LYPH01000016.1	Genbank	gene	4130	4203	.	-	.	ID=gene-A8144_06145;Name=A8144_06145;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_06145
LYPH01000016.1	tRNAscan-SE	tRNA	4130	4203	.	-	.	ID=rna-A8144_06145;Parent=gene-A8144_06145;anticodon=(pos:complement(4167..4169));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_06145;product=tRNA-Leu
LYPH01000016.1	tRNAscan-SE	exon	4130	4203	.	-	.	ID=exon-A8144_06145-1;Parent=rna-A8144_06145;anticodon=(pos:complement(4167..4169));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_06145;product=tRNA-Leu
LYPH01000016.1	Genbank	gene	4899	5201	.	+	.	ID=gene-A8144_06150;Name=A8144_06150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06150
LYPH01000016.1	GeneMarkS+	CDS	4899	5201	.	+	0	ID=cds-OAR21381.1;Parent=gene-A8144_06150;Dbxref=NCBI_GP:OAR21381.1;Name=OAR21381.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06150;product=hypothetical protein;protein_id=OAR21381.1;transl_table=11
LYPH01000016.1	Genbank	gene	5755	5988	.	+	.	ID=gene-A8144_06155;Name=A8144_06155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06155
LYPH01000016.1	GeneMarkS+	CDS	5755	5988	.	+	0	ID=cds-OAR21382.1;Parent=gene-A8144_06155;Dbxref=NCBI_GP:OAR21382.1;Name=OAR21382.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06155;product=hypothetical protein;protein_id=OAR21382.1;transl_table=11
LYPH01000016.1	Genbank	gene	5985	6167	.	-	.	ID=gene-A8144_06160;Name=A8144_06160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06160
LYPH01000016.1	GeneMarkS+	CDS	5985	6167	.	-	0	ID=cds-OAR21383.1;Parent=gene-A8144_06160;Dbxref=NCBI_GP:OAR21383.1;Name=OAR21383.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06160;product=hypothetical protein;protein_id=OAR21383.1;transl_table=11
LYPH01000016.1	Genbank	pseudogene	6293	6590	.	+	.	ID=gene-A8144_06165;Name=A8144_06165;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06165;pseudo=true
LYPH01000016.1	Protein Homology	CDS	6293	6590	.	+	0	ID=cds-A8144_06165;Parent=gene-A8144_06165;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011742160.1;locus_tag=A8144_06165;product=peptidase M22;pseudo=true;transl_table=11
LYPH01000016.1	Genbank	gene	6755	7006	.	+	.	ID=gene-A8144_06170;Name=A8144_06170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06170
LYPH01000016.1	GeneMarkS+	CDS	6755	7006	.	+	0	ID=cds-OAR21384.1;Parent=gene-A8144_06170;Dbxref=NCBI_GP:OAR21384.1;Name=OAR21384.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06170;product=hypothetical protein;protein_id=OAR21384.1;transl_table=11
LYPH01000016.1	Genbank	gene	8238	8540	.	-	.	ID=gene-A8144_06175;Name=A8144_06175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06175
LYPH01000016.1	GeneMarkS+	CDS	8238	8540	.	-	0	ID=cds-OAR21385.1;Parent=gene-A8144_06175;Dbxref=NCBI_GP:OAR21385.1;Name=OAR21385.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06175;product=hypothetical protein;protein_id=OAR21385.1;transl_table=11
LYPH01000016.1	Genbank	gene	8986	9168	.	+	.	ID=gene-A8144_06180;Name=A8144_06180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06180
LYPH01000016.1	GeneMarkS+	CDS	8986	9168	.	+	0	ID=cds-OAR21386.1;Parent=gene-A8144_06180;Dbxref=NCBI_GP:OAR21386.1;Name=OAR21386.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06180;product=hypothetical protein;protein_id=OAR21386.1;transl_table=11
LYPH01000016.1	Genbank	gene	10797	11012	.	-	.	ID=gene-A8144_06185;Name=A8144_06185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06185
LYPH01000016.1	GeneMarkS+	CDS	10797	11012	.	-	0	ID=cds-OAR21387.1;Parent=gene-A8144_06185;Dbxref=NCBI_GP:OAR21387.1;Name=OAR21387.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06185;product=hypothetical protein;protein_id=OAR21387.1;transl_table=11
LYPH01000016.1	Genbank	gene	11285	12238	.	-	.	ID=gene-A8144_06190;Name=A8144_06190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06190
LYPH01000016.1	Protein Homology	CDS	11285	12238	.	-	0	ID=cds-OAR21388.1;Parent=gene-A8144_06190;Dbxref=NCBI_GP:OAR21388.1;Name=OAR21388.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907637.1;locus_tag=A8144_06190;product=exopolyphosphatase;protein_id=OAR21388.1;transl_table=11
LYPH01000016.1	Genbank	gene	12235	12738	.	-	.	ID=gene-A8144_06195;Name=A8144_06195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06195
LYPH01000016.1	Protein Homology	CDS	12235	12738	.	-	0	ID=cds-OAR21389.1;Parent=gene-A8144_06195;Dbxref=NCBI_GP:OAR21389.1;Name=OAR21389.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907636.1;locus_tag=A8144_06195;product=hypothetical protein;protein_id=OAR21389.1;transl_table=11
LYPH01000016.1	Genbank	gene	12731	13414	.	-	.	ID=gene-A8144_06200;Name=A8144_06200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06200
LYPH01000016.1	Protein Homology	CDS	12731	13414	.	-	0	ID=cds-OAR21390.1;Parent=gene-A8144_06200;Dbxref=NCBI_GP:OAR21390.1;Name=OAR21390.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907635.1;locus_tag=A8144_06200;product=septation inhibitor protein;protein_id=OAR21390.1;transl_table=11
LYPH01000016.1	Genbank	gene	13449	14738	.	-	.	ID=gene-A8144_06205;Name=A8144_06205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06205
LYPH01000016.1	Protein Homology	CDS	13449	14738	.	-	0	ID=cds-OAR21426.1;Parent=gene-A8144_06205;Dbxref=NCBI_GP:OAR21426.1;Name=OAR21426.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007776761.1;locus_tag=A8144_06205;product=phosphopyruvate hydratase;protein_id=OAR21426.1;transl_table=11
LYPH01000016.1	Genbank	gene	16278	16505	.	+	.	ID=gene-A8144_06210;Name=A8144_06210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06210
LYPH01000016.1	GeneMarkS+	CDS	16278	16505	.	+	0	ID=cds-OAR21391.1;Parent=gene-A8144_06210;Dbxref=NCBI_GP:OAR21391.1;Name=OAR21391.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06210;product=hypothetical protein;protein_id=OAR21391.1;transl_table=11
LYPH01000016.1	Genbank	gene	16802	20476	.	-	.	ID=gene-A8144_06215;Name=A8144_06215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06215
LYPH01000016.1	Protein Homology	CDS	16802	20476	.	-	0	ID=cds-OAR21392.1;Parent=gene-A8144_06215;Dbxref=NCBI_GP:OAR21392.1;Name=OAR21392.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907633.1;locus_tag=A8144_06215;product=transcription-repair coupling factor;protein_id=OAR21392.1;transl_table=11
LYPH01000016.1	Genbank	gene	20849	21262	.	+	.	ID=gene-A8144_06220;Name=A8144_06220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06220
LYPH01000016.1	GeneMarkS+	CDS	20849	21262	.	+	0	ID=cds-OAR21393.1;Parent=gene-A8144_06220;Dbxref=NCBI_GP:OAR21393.1;Name=OAR21393.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06220;product=hypothetical protein;protein_id=OAR21393.1;transl_table=11
LYPH01000016.1	Genbank	pseudogene	21545	22156	.	-	.	ID=gene-A8144_06225;Name=A8144_06225;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06225;pseudo=true
LYPH01000016.1	Protein Homology	CDS	21545	22156	.	-	0	ID=cds-A8144_06225;Parent=gene-A8144_06225;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003405271.1;locus_tag=A8144_06225;product=TetR family transcriptional regulator;pseudo=true;transl_table=11
LYPH01000016.1	Genbank	gene	22340	22411	.	+	.	ID=gene-A8144_06230;Name=A8144_06230;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_06230
LYPH01000016.1	tRNAscan-SE	tRNA	22340	22411	.	+	.	ID=rna-A8144_06230;Parent=gene-A8144_06230;anticodon=(pos:22373..22375);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_06230;product=tRNA-Gln
LYPH01000016.1	tRNAscan-SE	exon	22340	22411	.	+	.	ID=exon-A8144_06230-1;Parent=rna-A8144_06230;anticodon=(pos:22373..22375);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_06230;product=tRNA-Gln
LYPH01000016.1	Genbank	gene	22509	23987	.	+	.	ID=gene-A8144_06235;Name=A8144_06235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06235
LYPH01000016.1	Protein Homology	CDS	22509	23987	.	+	0	ID=cds-OAR21394.1;Parent=gene-A8144_06235;Dbxref=NCBI_GP:OAR21394.1;Name=OAR21394.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CD44.1;locus_tag=A8144_06235;product=UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase;protein_id=OAR21394.1;transl_table=11
LYPH01000016.1	Genbank	gene	24101	25081	.	+	.	ID=gene-A8144_06240;Name=A8144_06240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06240
LYPH01000016.1	Protein Homology	CDS	24101	25081	.	+	0	ID=cds-OAR21427.1;Parent=gene-A8144_06240;Dbxref=NCBI_GP:OAR21427.1;Name=OAR21427.1;Note=catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012396022.1;locus_tag=A8144_06240;product=ribose-phosphate pyrophosphokinase;protein_id=OAR21427.1;transl_table=11
LYPH01000016.1	Genbank	gene	25137	25451	.	+	.	ID=gene-A8144_06245;Name=A8144_06245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06245
LYPH01000016.1	Protein Homology	CDS	25137	25451	.	+	0	ID=cds-OAR21395.1;Parent=gene-A8144_06245;Dbxref=NCBI_GP:OAR21395.1;Name=OAR21395.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907630.1;locus_tag=A8144_06245;product=ArsC family transcriptional regulator;protein_id=OAR21395.1;transl_table=11
LYPH01000016.1	Genbank	gene	25488	26144	.	+	.	ID=gene-A8144_06250;Name=A8144_06250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06250
LYPH01000016.1	Protein Homology	CDS	25488	26144	.	+	0	ID=cds-OAR21428.1;Parent=gene-A8144_06250;Dbxref=NCBI_GP:OAR21428.1;Name=OAR21428.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CD47.1;locus_tag=A8144_06250;product=hypothetical protein;protein_id=OAR21428.1;transl_table=11
LYPH01000016.1	Genbank	gene	27319	27966	.	+	.	ID=gene-A8144_06255;Name=A8144_06255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06255
LYPH01000016.1	Protein Homology	CDS	27319	27966	.	+	0	ID=cds-OAR21396.1;Parent=gene-A8144_06255;Dbxref=NCBI_GP:OAR21396.1;Name=OAR21396.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CD48.1;locus_tag=A8144_06255;product=50S ribosomal protein L25/general stress protein Ctc;protein_id=OAR21396.1;transl_table=11
LYPH01000016.1	Genbank	gene	27979	28578	.	+	.	ID=gene-A8144_06260;Name=A8144_06260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06260
LYPH01000016.1	Protein Homology	CDS	27979	28578	.	+	0	ID=cds-OAR21397.1;Parent=gene-A8144_06260;Dbxref=NCBI_GP:OAR21397.1;Name=OAR21397.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CD49.1;locus_tag=A8144_06260;product=aminoacyl-tRNA hydrolase;protein_id=OAR21397.1;transl_table=11
LYPH01000016.1	Genbank	gene	28689	30323	.	-	.	ID=gene-A8144_06265;Name=A8144_06265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06265
LYPH01000016.1	Protein Homology	CDS	28689	30323	.	-	0	ID=cds-OAR21398.1;Parent=gene-A8144_06265;Dbxref=NCBI_GP:OAR21398.1;Name=OAR21398.1;Note=activates fatty acids by binding to coenzyme A;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005139918.1;locus_tag=A8144_06265;product=long-chain fatty acid--CoA ligase;protein_id=OAR21398.1;transl_table=11
LYPH01000016.1	Genbank	gene	30566	31501	.	-	.	ID=gene-A8144_06270;Name=A8144_06270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06270
LYPH01000016.1	Protein Homology	CDS	30566	31501	.	-	0	ID=cds-OAR21429.1;Parent=gene-A8144_06270;Dbxref=NCBI_GP:OAR21429.1;Name=OAR21429.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CD51.1;locus_tag=A8144_06270;product=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase;protein_id=OAR21429.1;transl_table=11
LYPH01000016.1	Genbank	gene	31575	32513	.	-	.	ID=gene-A8144_06275;Name=A8144_06275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06275
LYPH01000016.1	Protein Homology	CDS	31575	32513	.	-	0	ID=cds-OAR21399.1;Parent=gene-A8144_06275;Dbxref=NCBI_GP:OAR21399.1;Name=OAR21399.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003918171.1;locus_tag=A8144_06275;product=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase;protein_id=OAR21399.1;transl_table=11
LYPH01000016.1	Genbank	gene	32468	33595	.	-	.	ID=gene-A8144_06280;Name=A8144_06280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06280
LYPH01000016.1	Protein Homology	CDS	32468	33595	.	-	0	ID=cds-OAR21400.1;Parent=gene-A8144_06280;Dbxref=NCBI_GP:OAR21400.1;Name=OAR21400.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907623.1;locus_tag=A8144_06280;product=Resuscitation-promoting factor RpfB;protein_id=OAR21400.1;transl_table=11
LYPH01000016.1	Genbank	gene	33845	34702	.	-	.	ID=gene-A8144_06285;Name=A8144_06285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06285
LYPH01000016.1	Protein Homology	CDS	33845	34702	.	-	0	ID=cds-OAR21401.1;Parent=gene-A8144_06285;Dbxref=NCBI_GP:OAR21401.1;Name=OAR21401.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015356979.1;locus_tag=A8144_06285;product=DNAase;protein_id=OAR21401.1;transl_table=11
LYPH01000016.1	Genbank	gene	34722	36335	.	+	.	ID=gene-A8144_06290;Name=A8144_06290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06290
LYPH01000016.1	Protein Homology	CDS	34722	36335	.	+	0	ID=cds-OAR21402.1;Parent=gene-A8144_06290;Dbxref=NCBI_GP:OAR21402.1;Name=OAR21402.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CD55.1;locus_tag=A8144_06290;product=methionine--tRNA ligase;protein_id=OAR21402.1;transl_table=11
LYPH01000016.1	Genbank	gene	37362	37580	.	-	.	ID=gene-A8144_06295;Name=A8144_06295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06295
LYPH01000016.1	GeneMarkS+	CDS	37362	37580	.	-	0	ID=cds-OAR21403.1;Parent=gene-A8144_06295;Dbxref=NCBI_GP:OAR21403.1;Name=OAR21403.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06295;product=hypothetical protein;protein_id=OAR21403.1;transl_table=11
LYPH01000016.1	Genbank	gene	37632	38888	.	+	.	ID=gene-A8144_06300;Name=A8144_06300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06300
LYPH01000016.1	Protein Homology	CDS	37632	38888	.	+	0	ID=cds-OAR21404.1;Parent=gene-A8144_06300;Dbxref=NCBI_GP:OAR21404.1;Name=OAR21404.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907620.1;locus_tag=A8144_06300;product=aminodeoxychorismate synthase%2C component I;protein_id=OAR21404.1;transl_table=11
LYPH01000016.1	Genbank	gene	39974	42520	.	-	.	ID=gene-A8144_06305;Name=A8144_06305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06305
LYPH01000016.1	Protein Homology	CDS	39974	42520	.	-	0	ID=cds-OAR21405.1;Parent=gene-A8144_06305;Dbxref=NCBI_GP:OAR21405.1;Name=OAR21405.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P24428.2;locus_tag=A8144_06305;product=NDP-hexose 4-ketoreductase;protein_id=OAR21405.1;transl_table=11
LYPH01000016.1	Genbank	gene	42817	43155	.	-	.	ID=gene-A8144_06310;Name=A8144_06310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06310
LYPH01000016.1	Protein Homology	CDS	42817	43155	.	-	0	ID=cds-OAR21406.1;Parent=gene-A8144_06310;Dbxref=NCBI_GP:OAR21406.1;Name=OAR21406.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014210608.1;locus_tag=A8144_06310;product=nucleoid-associated protein Lsr2;protein_id=OAR21406.1;transl_table=11
LYPH01000016.1	Genbank	gene	43260	44783	.	-	.	ID=gene-A8144_06315;Name=A8144_06315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06315
LYPH01000016.1	Protein Homology	CDS	43260	44783	.	-	0	ID=cds-OAR21407.1;Parent=gene-A8144_06315;Dbxref=NCBI_GP:OAR21407.1;Name=OAR21407.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46861.2;locus_tag=A8144_06315;product=lysine--tRNA ligase;protein_id=OAR21407.1;transl_table=11
LYPH01000016.1	Genbank	gene	44864	45688	.	-	.	ID=gene-A8144_06320;Name=A8144_06320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06320
LYPH01000016.1	Protein Homology	CDS	44864	45688	.	-	0	ID=cds-OAR21408.1;Parent=gene-A8144_06320;Dbxref=NCBI_GP:OAR21408.1;Name=OAR21408.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014210605.1;locus_tag=A8144_06320;product=pantothenate kinase;protein_id=OAR21408.1;transl_table=11
LYPH01000016.1	Genbank	gene	45691	46119	.	-	.	ID=gene-A8144_06325;Name=A8144_06325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06325
LYPH01000016.1	Protein Homology	CDS	45691	46119	.	-	0	ID=cds-OAR21409.1;Parent=gene-A8144_06325;Dbxref=NCBI_GP:OAR21409.1;Name=OAR21409.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008263496.1;locus_tag=A8144_06325;product=aspartate 1-decarboxylase;protein_id=OAR21409.1;transl_table=11
LYPH01000016.1	Genbank	gene	46119	47060	.	-	.	ID=gene-A8144_06330;Name=A8144_06330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06330
LYPH01000016.1	Protein Homology	CDS	46119	47060	.	-	0	ID=cds-OAR21410.1;Parent=gene-A8144_06330;Dbxref=NCBI_GP:OAR21410.1;Name=OAR21410.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O69524.2;locus_tag=A8144_06330;product=pantoate--beta-alanine ligase;protein_id=OAR21410.1;transl_table=11
LYPH01000016.1	Genbank	gene	47057	47986	.	-	.	ID=gene-A8144_06335;Name=A8144_06335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06335
LYPH01000016.1	Protein Homology	CDS	47057	47986	.	-	0	ID=cds-OAR21430.1;Parent=gene-A8144_06335;Dbxref=NCBI_GP:OAR21430.1;Name=OAR21430.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014383745.1;locus_tag=A8144_06335;product=oxidoreductase;protein_id=OAR21430.1;transl_table=11
LYPH01000016.1	Genbank	gene	48087	49385	.	-	.	ID=gene-A8144_06340;Name=A8144_06340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06340
LYPH01000016.1	Protein Homology	CDS	48087	49385	.	-	0	ID=cds-OAR21411.1;Parent=gene-A8144_06340;Dbxref=NCBI_GP:OAR21411.1;Name=OAR21411.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907612.1;locus_tag=A8144_06340;product=hypothetical protein;protein_id=OAR21411.1;transl_table=11
LYPH01000016.1	Genbank	gene	49531	50007	.	-	.	ID=gene-A8144_06345;Name=A8144_06345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06345
LYPH01000016.1	Protein Homology	CDS	49531	50007	.	-	0	ID=cds-OAR21412.1;Parent=gene-A8144_06345;Dbxref=NCBI_GP:OAR21412.1;Name=OAR21412.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907611.1;locus_tag=A8144_06345;product=hypothetical protein;protein_id=OAR21412.1;transl_table=11
LYPH01000016.1	Genbank	gene	50007	50582	.	-	.	ID=gene-A8144_06350;Name=A8144_06350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06350
LYPH01000016.1	Protein Homology	CDS	50007	50582	.	-	0	ID=cds-OAR21413.1;Parent=gene-A8144_06350;Dbxref=NCBI_GP:OAR21413.1;Name=OAR21413.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O69528.1;locus_tag=A8144_06350;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase;protein_id=OAR21413.1;transl_table=11
LYPH01000016.1	Genbank	gene	50582	50980	.	-	.	ID=gene-A8144_06355;Name=A8144_06355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06355
LYPH01000016.1	Protein Homology	CDS	50582	50980	.	-	0	ID=cds-OAR21414.1;Parent=gene-A8144_06355;Dbxref=NCBI_GP:OAR21414.1;Name=OAR21414.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O69529.1;locus_tag=A8144_06355;product=dihydroneopterin aldolase;protein_id=OAR21414.1;transl_table=11
LYPH01000016.1	Genbank	gene	50973	51827	.	-	.	ID=gene-A8144_06360;Name=A8144_06360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06360
LYPH01000016.1	Protein Homology	CDS	50973	51827	.	-	0	ID=cds-OAR21415.1;Parent=gene-A8144_06360;Dbxref=NCBI_GP:OAR21415.1;Name=OAR21415.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P0C0X1.1;locus_tag=A8144_06360;product=dihydropteroate synthase;protein_id=OAR21415.1;transl_table=11
LYPH01000016.1	Genbank	gene	51824	52441	.	-	.	ID=gene-A8144_06365;Name=A8144_06365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06365
LYPH01000016.1	Protein Homology	CDS	51824	52441	.	-	0	ID=cds-OAR21416.1;Parent=gene-A8144_06365;Dbxref=NCBI_GP:OAR21416.1;Name=OAR21416.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O69531.1;locus_tag=A8144_06365;product=GTP cyclohydrolase I FolE;protein_id=OAR21416.1;transl_table=11
LYPH01000016.1	Genbank	gene	52458	54821	.	-	.	ID=gene-A8144_06370;Name=A8144_06370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06370
LYPH01000016.1	Protein Homology	CDS	52458	54821	.	-	0	ID=cds-OAR21431.1;Parent=gene-A8144_06370;Dbxref=NCBI_GP:OAR21431.1;Name=OAR21431.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014381725.1;locus_tag=A8144_06370;product=cell division protein FtsH;protein_id=OAR21431.1;transl_table=11
LYPH01000016.1	Genbank	pseudogene	56053	57113	.	+	.	ID=gene-A8144_06375;Name=A8144_06375;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06375;pseudo=true
LYPH01000016.1	Protein Homology	CDS	56053	57113	.	+	0	ID=cds-A8144_06375;Parent=gene-A8144_06375;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014378976.1;locus_tag=A8144_06375;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000016.1	Genbank	pseudogene	57155	58162	.	+	.	ID=gene-A8144_06380;Name=A8144_06380;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06380;pseudo=true
LYPH01000016.1	Protein Homology	CDS	57155	58162	.	+	0	ID=cds-A8144_06380;Parent=gene-A8144_06380;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007772304.1;locus_tag=A8144_06380;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000016.1	Genbank	gene	58308	58694	.	+	.	ID=gene-A8144_06385;Name=A8144_06385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06385
LYPH01000016.1	Protein Homology	CDS	58308	58694	.	+	0	ID=cds-OAR21417.1;Parent=gene-A8144_06385;Dbxref=NCBI_GP:OAR21417.1;Name=OAR21417.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907605.1;locus_tag=A8144_06385;product=hypothetical protein;protein_id=OAR21417.1;transl_table=11
LYPH01000016.1	Genbank	gene	59151	59468	.	-	.	ID=gene-A8144_06390;Name=A8144_06390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06390
LYPH01000016.1	GeneMarkS+	CDS	59151	59468	.	-	0	ID=cds-OAR21418.1;Parent=gene-A8144_06390;Dbxref=NCBI_GP:OAR21418.1;Name=OAR21418.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06390;product=hypothetical protein;protein_id=OAR21418.1;transl_table=11
LYPH01000016.1	Genbank	gene	59600	59845	.	-	.	ID=gene-A8144_06395;Name=A8144_06395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06395
LYPH01000016.1	Protein Homology	CDS	59600	59845	.	-	0	ID=cds-OAR21419.1;Parent=gene-A8144_06395;Dbxref=NCBI_GP:OAR21419.1;Name=OAR21419.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907604.1;locus_tag=A8144_06395;product=hypothetical protein;protein_id=OAR21419.1;transl_table=11
LYPH01000016.1	Genbank	gene	61957	62259	.	+	.	ID=gene-A8144_06400;Name=A8144_06400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06400
LYPH01000016.1	GeneMarkS+	CDS	61957	62259	.	+	0	ID=cds-OAR21420.1;Parent=gene-A8144_06400;Dbxref=NCBI_GP:OAR21420.1;Name=OAR21420.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06400;product=hypothetical protein;protein_id=OAR21420.1;transl_table=11
LYPH01000016.1	Genbank	gene	62298	62909	.	-	.	ID=gene-A8144_06405;Name=A8144_06405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06405
LYPH01000016.1	Protein Homology	CDS	62298	62909	.	-	0	ID=cds-OAR21432.1;Parent=gene-A8144_06405;Dbxref=NCBI_GP:OAR21432.1;Name=OAR21432.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P96794.1;locus_tag=A8144_06405;product=hypoxanthine phosphoribosyltransferase;protein_id=OAR21432.1;transl_table=11
LYPH01000016.1	Genbank	gene	62972	63943	.	-	.	ID=gene-A8144_06410;Name=A8144_06410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06410
LYPH01000016.1	Protein Homology	CDS	62972	63943	.	-	0	ID=cds-OAR21421.1;Parent=gene-A8144_06410;Dbxref=NCBI_GP:OAR21421.1;Name=OAR21421.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O69538.1;locus_tag=A8144_06410;product=tRNA lysidine(34) synthetase TilS;protein_id=OAR21421.1;transl_table=11
LYPH01000016.1	Genbank	pseudogene	63922	64984	.	-	.	ID=gene-A8144_06415;Name=A8144_06415;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06415;pseudo=true
LYPH01000016.1	Protein Homology	CDS	63922	64984	.	-	0	ID=cds-A8144_06415;Parent=gene-A8144_06415;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003873260.1;locus_tag=A8144_06415;product=hydrolase;pseudo=true;transl_table=11
LYPH01000016.1	Genbank	gene	64981	66318	.	-	.	ID=gene-A8144_06420;Name=A8144_06420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06420
LYPH01000016.1	Protein Homology	CDS	64981	66318	.	-	0	ID=cds-OAR21422.1;Parent=gene-A8144_06420;Dbxref=NCBI_GP:OAR21422.1;Name=OAR21422.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014381716.1;locus_tag=A8144_06420;product=D-alanyl-D-alanine carboxypeptidase;protein_id=OAR21422.1;transl_table=11
LYPH01000016.1	Genbank	gene	66492	66980	.	+	.	ID=gene-A8144_06425;Name=A8144_06425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06425
LYPH01000016.1	Protein Homology	CDS	66492	66980	.	+	0	ID=cds-OAR21423.1;Parent=gene-A8144_06425;Dbxref=NCBI_GP:OAR21423.1;Name=OAR21423.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_013830833.1;locus_tag=A8144_06425;product=inorganic pyrophosphatase;protein_id=OAR21423.1;transl_table=11
LYPH01000016.1	Genbank	gene	67172	67498	.	-	.	ID=gene-A8144_06430;Name=A8144_06430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06430
LYPH01000016.1	GeneMarkS+	CDS	67172	67498	.	-	0	ID=cds-OAR21424.1;Parent=gene-A8144_06430;Dbxref=NCBI_GP:OAR21424.1;Name=OAR21424.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06430;product=hypothetical protein;protein_id=OAR21424.1;transl_table=11
LYPH01000016.1	Genbank	gene	67546	67746	.	+	.	ID=gene-A8144_06435;Name=A8144_06435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06435
LYPH01000016.1	GeneMarkS+	CDS	67546	67746	.	+	0	ID=cds-OAR21425.1;Parent=gene-A8144_06435;Dbxref=NCBI_GP:OAR21425.1;Name=OAR21425.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06435;product=hypothetical protein;protein_id=OAR21425.1;transl_table=11
##sequence-region LYPH01000017.1 1 59307
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000017.1	Genbank	region	1	59307	.	+	.	ID=LYPH01000017.1:1..59307;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000017.1	Genbank	gene	83	559	.	+	.	ID=gene-A8144_06440;Name=A8144_06440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06440
LYPH01000017.1	Protein Homology	CDS	83	559	.	+	0	ID=cds-OAR21336.1;Parent=gene-A8144_06440;Dbxref=NCBI_GP:OAR21336.1;Name=OAR21336.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907726.1;locus_tag=A8144_06440;product=hypothetical protein;protein_id=OAR21336.1;transl_table=11
LYPH01000017.1	Genbank	gene	1546	1806	.	+	.	ID=gene-A8144_06445;Name=A8144_06445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06445
LYPH01000017.1	GeneMarkS+	CDS	1546	1806	.	+	0	ID=cds-OAR21337.1;Parent=gene-A8144_06445;Dbxref=NCBI_GP:OAR21337.1;Name=OAR21337.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06445;product=hypothetical protein;protein_id=OAR21337.1;transl_table=11
LYPH01000017.1	Genbank	gene	2185	2577	.	+	.	ID=gene-A8144_06450;Name=A8144_06450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06450
LYPH01000017.1	Protein Homology	CDS	2185	2577	.	+	0	ID=cds-OAR21338.1;Parent=gene-A8144_06450;Dbxref=NCBI_GP:OAR21338.1;Name=OAR21338.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908741.1;locus_tag=A8144_06450;product=hypothetical protein;protein_id=OAR21338.1;transl_table=11
LYPH01000017.1	Genbank	gene	2689	4338	.	-	.	ID=gene-A8144_06455;Name=A8144_06455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06455
LYPH01000017.1	Protein Homology	CDS	2689	4338	.	-	0	ID=cds-OAR21339.1;Parent=gene-A8144_06455;Dbxref=NCBI_GP:OAR21339.1;Name=OAR21339.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908740.1;locus_tag=A8144_06455;product=helicase;protein_id=OAR21339.1;transl_table=11
LYPH01000017.1	Genbank	gene	4375	6636	.	-	.	ID=gene-A8144_06460;Name=A8144_06460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06460
LYPH01000017.1	Protein Homology	CDS	4375	6636	.	-	0	ID=cds-OAR21340.1;Parent=gene-A8144_06460;Dbxref=NCBI_GP:OAR21340.1;Name=OAR21340.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908739.1;locus_tag=A8144_06460;product=DNA-binding protein;protein_id=OAR21340.1;transl_table=11
LYPH01000017.1	Genbank	gene	6734	6958	.	+	.	ID=gene-A8144_06465;Name=A8144_06465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06465
LYPH01000017.1	Protein Homology	CDS	6734	6958	.	+	0	ID=cds-OAR21341.1;Parent=gene-A8144_06465;Dbxref=NCBI_GP:OAR21341.1;Name=OAR21341.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908738.1;locus_tag=A8144_06465;product=hypothetical protein;protein_id=OAR21341.1;transl_table=11
LYPH01000017.1	Genbank	pseudogene	7137	7511	.	+	.	ID=gene-A8144_06470;Name=A8144_06470;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06470;pseudo=true
LYPH01000017.1	Protein Homology	CDS	7137	7511	.	+	0	ID=cds-A8144_06470;Parent=gene-A8144_06470;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003877331.1;locus_tag=A8144_06470;product=cyclic pyranopterin monophosphate synthase accessory protein;pseudo=true;transl_table=11
LYPH01000017.1	Genbank	pseudogene	7590	7930	.	+	.	ID=gene-A8144_06475;Name=A8144_06475;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06475;pseudo=true
LYPH01000017.1	Protein Homology	CDS	7590	7930	.	+	0	ID=cds-A8144_06475;Parent=gene-A8144_06475;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020726542.1;locus_tag=A8144_06475;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000017.1	Genbank	gene	7997	8290	.	+	.	ID=gene-A8144_06480;Name=A8144_06480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06480
LYPH01000017.1	GeneMarkS+	CDS	7997	8290	.	+	0	ID=cds-OAR21342.1;Parent=gene-A8144_06480;Dbxref=NCBI_GP:OAR21342.1;Name=OAR21342.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06480;product=hypothetical protein;protein_id=OAR21342.1;transl_table=11
LYPH01000017.1	Genbank	gene	8405	8929	.	-	.	ID=gene-A8144_06485;Name=A8144_06485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06485
LYPH01000017.1	Protein Homology	CDS	8405	8929	.	-	0	ID=cds-OAR21343.1;Parent=gene-A8144_06485;Dbxref=NCBI_GP:OAR21343.1;Name=OAR21343.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908737.1;locus_tag=A8144_06485;product=hypothetical protein;protein_id=OAR21343.1;transl_table=11
LYPH01000017.1	Genbank	gene	10190	10477	.	+	.	ID=gene-A8144_06490;Name=A8144_06490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06490
LYPH01000017.1	GeneMarkS+	CDS	10190	10477	.	+	0	ID=cds-OAR21344.1;Parent=gene-A8144_06490;Dbxref=NCBI_GP:OAR21344.1;Name=OAR21344.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06490;product=hypothetical protein;protein_id=OAR21344.1;transl_table=11
LYPH01000017.1	Genbank	gene	10757	10945	.	+	.	ID=gene-A8144_06495;Name=A8144_06495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06495
LYPH01000017.1	GeneMarkS+	CDS	10757	10945	.	+	0	ID=cds-OAR21345.1;Parent=gene-A8144_06495;Dbxref=NCBI_GP:OAR21345.1;Name=OAR21345.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06495;product=hypothetical protein;protein_id=OAR21345.1;transl_table=11
LYPH01000017.1	Genbank	gene	11253	11663	.	+	.	ID=gene-A8144_06500;Name=A8144_06500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06500
LYPH01000017.1	Protein Homology	CDS	11253	11663	.	+	0	ID=cds-OAR21346.1;Parent=gene-A8144_06500;Dbxref=NCBI_GP:OAR21346.1;Name=OAR21346.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003872914.1;locus_tag=A8144_06500;product=cold-shock protein;protein_id=OAR21346.1;transl_table=11
LYPH01000017.1	Genbank	gene	11848	12135	.	+	.	ID=gene-A8144_06505;Name=A8144_06505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06505
LYPH01000017.1	GeneMarkS+	CDS	11848	12135	.	+	0	ID=cds-OAR21347.1;Parent=gene-A8144_06505;Dbxref=NCBI_GP:OAR21347.1;Name=OAR21347.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06505;product=hypothetical protein;protein_id=OAR21347.1;transl_table=11
LYPH01000017.1	Genbank	pseudogene	12982	14625	.	+	.	ID=gene-A8144_06510;Name=A8144_06510;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06510;pseudo=true
LYPH01000017.1	Protein Homology	CDS	12982	14625	.	+	0	ID=cds-A8144_06510;Parent=gene-A8144_06510;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003907502.1;locus_tag=A8144_06510;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000017.1	Genbank	pseudogene	14915	16384	.	-	.	ID=gene-A8144_06515;Name=A8144_06515;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06515;pseudo=true
LYPH01000017.1	Protein Homology	CDS	14915	16384	.	-	0	ID=cds-A8144_06515;Parent=gene-A8144_06515;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007727675.1;locus_tag=A8144_06515;product=D-serine/D-alanine/glycine transporter;pseudo=true;transl_table=11
LYPH01000017.1	Genbank	gene	17513	18001	.	-	.	ID=gene-A8144_06520;Name=A8144_06520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06520
LYPH01000017.1	Protein Homology	CDS	17513	18001	.	-	0	ID=cds-OAR21348.1;Parent=gene-A8144_06520;Dbxref=NCBI_GP:OAR21348.1;Name=OAR21348.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908735.1;locus_tag=A8144_06520;product=hypothetical protein;protein_id=OAR21348.1;transl_table=11
LYPH01000017.1	Genbank	gene	18009	19748	.	-	.	ID=gene-A8144_06525;Name=A8144_06525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06525
LYPH01000017.1	Protein Homology	CDS	18009	19748	.	-	0	ID=cds-OAR21349.1;Parent=gene-A8144_06525;Dbxref=NCBI_GP:OAR21349.1;Name=OAR21349.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33057.1;locus_tag=A8144_06525;product=hypothetical protein;protein_id=OAR21349.1;transl_table=11
LYPH01000017.1	Genbank	gene	19858	20667	.	+	.	ID=gene-A8144_06530;Name=A8144_06530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06530
LYPH01000017.1	Protein Homology	CDS	19858	20667	.	+	0	ID=cds-OAR21350.1;Parent=gene-A8144_06530;Dbxref=NCBI_GP:OAR21350.1;Name=OAR21350.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908733.1;locus_tag=A8144_06530;product=hypothetical protein;protein_id=OAR21350.1;transl_table=11
LYPH01000017.1	Genbank	gene	20779	21054	.	-	.	ID=gene-A8144_06535;Name=A8144_06535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06535
LYPH01000017.1	Protein Homology	CDS	20779	21054	.	-	0	ID=cds-OAR21351.1;Parent=gene-A8144_06535;Dbxref=NCBI_GP:OAR21351.1;Name=OAR21351.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908732.1;locus_tag=A8144_06535;product=hypothetical protein;protein_id=OAR21351.1;transl_table=11
LYPH01000017.1	Genbank	gene	21258	21689	.	+	.	ID=gene-A8144_06540;Name=A8144_06540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06540
LYPH01000017.1	Protein Homology	CDS	21258	21689	.	+	0	ID=cds-OAR21352.1;Parent=gene-A8144_06540;Dbxref=NCBI_GP:OAR21352.1;Name=OAR21352.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003872905.1;locus_tag=A8144_06540;product=MarR family transcriptional regulator;protein_id=OAR21352.1;transl_table=11
LYPH01000017.1	Genbank	gene	21686	21991	.	+	.	ID=gene-A8144_06545;Name=A8144_06545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06545
LYPH01000017.1	GeneMarkS+	CDS	21686	21991	.	+	0	ID=cds-OAR21353.1;Parent=gene-A8144_06545;Dbxref=NCBI_GP:OAR21353.1;Name=OAR21353.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06545;product=hypothetical protein;protein_id=OAR21353.1;transl_table=11
LYPH01000017.1	Genbank	gene	21988	22209	.	+	.	ID=gene-A8144_06550;Name=A8144_06550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06550
LYPH01000017.1	GeneMarkS+	CDS	21988	22209	.	+	0	ID=cds-OAR21354.1;Parent=gene-A8144_06550;Dbxref=NCBI_GP:OAR21354.1;Name=OAR21354.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06550;product=hypothetical protein;protein_id=OAR21354.1;transl_table=11
LYPH01000017.1	Genbank	gene	22936	23691	.	-	.	ID=gene-A8144_06555;Name=A8144_06555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06555
LYPH01000017.1	Protein Homology	CDS	22936	23691	.	-	0	ID=cds-OAR21374.1;Parent=gene-A8144_06555;Dbxref=NCBI_GP:OAR21374.1;Name=OAR21374.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908730.1;locus_tag=A8144_06555;product=hypothetical protein;protein_id=OAR21374.1;transl_table=11
LYPH01000017.1	Genbank	gene	23809	24939	.	-	.	ID=gene-A8144_06560;Name=A8144_06560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06560
LYPH01000017.1	Protein Homology	CDS	23809	24939	.	-	0	ID=cds-OAR21375.1;Parent=gene-A8144_06560;Dbxref=NCBI_GP:OAR21375.1;Name=OAR21375.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P63515.1;locus_tag=A8144_06560;product=phosphoserine aminotransferase;protein_id=OAR21375.1;transl_table=11
LYPH01000017.1	Genbank	gene	25153	26178	.	+	.	ID=gene-A8144_06565;Name=A8144_06565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06565
LYPH01000017.1	Protein Homology	CDS	25153	26178	.	+	0	ID=cds-OAR21376.1;Parent=gene-A8144_06565;Dbxref=NCBI_GP:OAR21376.1;Name=OAR21376.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009957570.1;locus_tag=A8144_06565;product=hypothetical protein;protein_id=OAR21376.1;transl_table=11
LYPH01000017.1	Genbank	gene	26194	27861	.	+	.	ID=gene-A8144_06570;Name=A8144_06570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06570
LYPH01000017.1	Protein Homology	CDS	26194	27861	.	+	0	ID=cds-OAR21355.1;Parent=gene-A8144_06570;Dbxref=NCBI_GP:OAR21355.1;Name=OAR21355.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33064.1;locus_tag=A8144_06570;product=ferredoxin;protein_id=OAR21355.1;transl_table=11
LYPH01000017.1	Genbank	pseudogene	27872	28322	.	-	.	ID=gene-A8144_06575;Name=A8144_06575;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06575;pseudo=true
LYPH01000017.1	Protein Homology	CDS	27872	28322	.	-	0	ID=cds-A8144_06575;Parent=gene-A8144_06575;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015292510.1;locus_tag=A8144_06575;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000017.1	Genbank	pseudogene	28658	29715	.	-	.	ID=gene-A8144_06580;Name=A8144_06580;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06580;pseudo=true
LYPH01000017.1	Protein Homology	CDS	28658	29715	.	-	0	ID=cds-A8144_06580;Parent=gene-A8144_06580;Note=forms citrate from oxaloacetate and acetyl-CoA%3B functions in TCA cycle%3B frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005065937.1;locus_tag=A8144_06580;product=citrate synthase;pseudo=true;transl_table=11
LYPH01000017.1	Genbank	gene	29890	30516	.	+	.	ID=gene-A8144_06585;Name=A8144_06585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06585
LYPH01000017.1	Protein Homology	CDS	29890	30516	.	+	0	ID=cds-OAR21377.1;Parent=gene-A8144_06585;Dbxref=NCBI_GP:OAR21377.1;Name=OAR21377.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003872896.1;locus_tag=A8144_06585;product=pyridoxamine 5'-phosphate oxidase;protein_id=OAR21377.1;transl_table=11
LYPH01000017.1	Genbank	gene	30765	32060	.	+	.	ID=gene-A8144_06590;Name=A8144_06590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06590
LYPH01000017.1	Protein Homology	CDS	30765	32060	.	+	0	ID=cds-OAR21356.1;Parent=gene-A8144_06590;Dbxref=NCBI_GP:OAR21356.1;Name=OAR21356.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009188691.1;locus_tag=A8144_06590;product=citrate (Si)-synthase;protein_id=OAR21356.1;transl_table=11
LYPH01000017.1	Genbank	gene	32826	32987	.	+	.	ID=gene-A8144_06595;Name=A8144_06595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06595
LYPH01000017.1	Protein Homology	CDS	32826	32987	.	+	0	ID=cds-OAR21378.1;Parent=gene-A8144_06595;Dbxref=NCBI_GP:OAR21378.1;Name=OAR21378.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908724.1;locus_tag=A8144_06595;product=PbsX family transcriptional regulator;protein_id=OAR21378.1;transl_table=11
LYPH01000017.1	Genbank	gene	33500	33841	.	+	.	ID=gene-A8144_06600;Name=A8144_06600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06600
LYPH01000017.1	GeneMarkS+	CDS	33500	33841	.	+	0	ID=cds-OAR21357.1;Parent=gene-A8144_06600;Dbxref=NCBI_GP:OAR21357.1;Name=OAR21357.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06600;product=hypothetical protein;protein_id=OAR21357.1;transl_table=11
LYPH01000017.1	Genbank	pseudogene	34207	35578	.	-	.	ID=gene-A8144_06605;Name=A8144_06605;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06605;pseudo=true
LYPH01000017.1	Protein Homology	CDS	34207	35578	.	-	0	ID=cds-A8144_06605;Parent=gene-A8144_06605;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011723896.1;locus_tag=A8144_06605;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000017.1	Genbank	pseudogene	35871	36867	.	+	.	ID=gene-A8144_06610;Name=A8144_06610;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06610;pseudo=true
LYPH01000017.1	Protein Homology	CDS	35871	36867	.	+	0	ID=cds-A8144_06610;Parent=gene-A8144_06610;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003915129.1;locus_tag=A8144_06610;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000017.1	Genbank	pseudogene	37039	37440	.	+	.	ID=gene-A8144_06615;Name=A8144_06615;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06615;pseudo=true
LYPH01000017.1	Protein Homology	CDS	37039	37440	.	+	0	ID=cds-A8144_06615;Parent=gene-A8144_06615;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015629745.1;locus_tag=A8144_06615;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000017.1	Genbank	gene	37465	38805	.	-	.	ID=gene-A8144_06620;Name=A8144_06620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06620
LYPH01000017.1	Protein Homology	CDS	37465	38805	.	-	0	ID=cds-OAR21358.1;Parent=gene-A8144_06620;Dbxref=NCBI_GP:OAR21358.1;Name=OAR21358.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33071.1;locus_tag=A8144_06620;product=two-component sensor histidine kinase;protein_id=OAR21358.1;transl_table=11
LYPH01000017.1	Genbank	gene	38823	39524	.	-	.	ID=gene-A8144_06625;Name=A8144_06625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06625
LYPH01000017.1	Protein Homology	CDS	38823	39524	.	-	0	ID=cds-OAR21359.1;Parent=gene-A8144_06625;Dbxref=NCBI_GP:OAR21359.1;Name=OAR21359.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908722.1;locus_tag=A8144_06625;product=DNA-binding response regulator;protein_id=OAR21359.1;transl_table=11
LYPH01000017.1	Genbank	gene	39755	39967	.	+	.	ID=gene-A8144_06630;Name=A8144_06630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06630
LYPH01000017.1	GeneMarkS+	CDS	39755	39967	.	+	0	ID=cds-OAR21360.1;Parent=gene-A8144_06630;Dbxref=NCBI_GP:OAR21360.1;Name=OAR21360.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06630;product=hypothetical protein;protein_id=OAR21360.1;transl_table=11
LYPH01000017.1	Genbank	gene	40465	40857	.	-	.	ID=gene-A8144_06635;Name=A8144_06635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06635
LYPH01000017.1	GeneMarkS+	CDS	40465	40857	.	-	0	ID=cds-OAR21361.1;Parent=gene-A8144_06635;Dbxref=NCBI_GP:OAR21361.1;Name=OAR21361.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06635;product=hypothetical protein;protein_id=OAR21361.1;transl_table=11
LYPH01000017.1	Genbank	gene	41724	42134	.	+	.	ID=gene-A8144_06640;Name=A8144_06640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06640
LYPH01000017.1	Protein Homology	CDS	41724	42134	.	+	0	ID=cds-OAR21362.1;Parent=gene-A8144_06640;Dbxref=NCBI_GP:OAR21362.1;Name=OAR21362.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908721.1;locus_tag=A8144_06640;product=hypothetical protein;protein_id=OAR21362.1;transl_table=11
LYPH01000017.1	Genbank	gene	42226	42405	.	+	.	ID=gene-A8144_06645;Name=A8144_06645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06645
LYPH01000017.1	GeneMarkS+	CDS	42226	42405	.	+	0	ID=cds-OAR21363.1;Parent=gene-A8144_06645;Dbxref=NCBI_GP:OAR21363.1;Name=OAR21363.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06645;product=hypothetical protein;protein_id=OAR21363.1;transl_table=11
LYPH01000017.1	Genbank	gene	42481	42708	.	-	.	ID=gene-A8144_06650;Name=A8144_06650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06650
LYPH01000017.1	GeneMarkS+	CDS	42481	42708	.	-	0	ID=cds-OAR21364.1;Parent=gene-A8144_06650;Dbxref=NCBI_GP:OAR21364.1;Name=OAR21364.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06650;product=hypothetical protein;protein_id=OAR21364.1;transl_table=11
LYPH01000017.1	Genbank	pseudogene	42813	44134	.	-	.	ID=gene-A8144_06655;Name=A8144_06655;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06655;pseudo=true
LYPH01000017.1	Protein Homology	CDS	42813	44134	.	-	0	ID=cds-A8144_06655;Parent=gene-A8144_06655;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020786050.1;locus_tag=A8144_06655;product=acetyl-CoA carboxyl transferase;pseudo=true;transl_table=11
LYPH01000017.1	Genbank	gene	44161	44904	.	+	.	ID=gene-A8144_06660;Name=A8144_06660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06660
LYPH01000017.1	Protein Homology	CDS	44161	44904	.	+	0	ID=cds-OAR21365.1;Parent=gene-A8144_06660;Dbxref=NCBI_GP:OAR21365.1;Name=OAR21365.1;Note=Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P64015.1;locus_tag=A8144_06660;product=enoyl-CoA hydratase;protein_id=OAR21365.1;transl_table=11
LYPH01000017.1	Genbank	pseudogene	44947	46025	.	+	.	ID=gene-A8144_06665;Name=A8144_06665;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06665;pseudo=true
LYPH01000017.1	Protein Homology	CDS	44947	46025	.	+	0	ID=cds-A8144_06665;Parent=gene-A8144_06665;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020786051.1;locus_tag=A8144_06665;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000017.1	Genbank	gene	46226	46426	.	+	.	ID=gene-A8144_06670;Name=A8144_06670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06670
LYPH01000017.1	GeneMarkS+	CDS	46226	46426	.	+	0	ID=cds-OAR21366.1;Parent=gene-A8144_06670;Dbxref=NCBI_GP:OAR21366.1;Name=OAR21366.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06670;product=hypothetical protein;protein_id=OAR21366.1;transl_table=11
LYPH01000017.1	Genbank	gene	46500	46775	.	+	.	ID=gene-A8144_06675;Name=A8144_06675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06675
LYPH01000017.1	GeneMarkS+	CDS	46500	46775	.	+	0	ID=cds-OAR21367.1;Parent=gene-A8144_06675;Dbxref=NCBI_GP:OAR21367.1;Name=OAR21367.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06675;product=hypothetical protein;protein_id=OAR21367.1;transl_table=11
LYPH01000017.1	Genbank	pseudogene	46976	48986	.	+	.	ID=gene-A8144_06680;Name=A8144_06680;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06680;pseudo=true
LYPH01000017.1	Protein Homology	CDS	46976	48986	.	+	0	ID=cds-A8144_06680;Parent=gene-A8144_06680;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003897043.1;locus_tag=A8144_06680;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000017.1	Genbank	gene	49092	49262	.	+	.	ID=gene-A8144_06685;Name=A8144_06685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06685
LYPH01000017.1	Protein Homology	CDS	49092	49262	.	+	0	ID=cds-OAR21368.1;Parent=gene-A8144_06685;Dbxref=NCBI_GP:OAR21368.1;Name=OAR21368.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011738542.1;locus_tag=A8144_06685;product=hypothetical protein;protein_id=OAR21368.1;transl_table=11
LYPH01000017.1	Genbank	gene	49259	49804	.	+	.	ID=gene-A8144_06690;Name=A8144_06690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06690
LYPH01000017.1	Protein Homology	CDS	49259	49804	.	+	0	ID=cds-OAR21369.1;Parent=gene-A8144_06690;Dbxref=NCBI_GP:OAR21369.1;Name=OAR21369.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908718.1;locus_tag=A8144_06690;product=toxin;protein_id=OAR21369.1;transl_table=11
LYPH01000017.1	Genbank	pseudogene	49864	50632	.	+	.	ID=gene-A8144_06695;Name=A8144_06695;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06695;pseudo=true
LYPH01000017.1	Protein Homology	CDS	49864	50632	.	+	0	ID=cds-A8144_06695;Parent=gene-A8144_06695;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015302721.1;locus_tag=A8144_06695;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000017.1	Genbank	gene	50691	51125	.	+	.	ID=gene-A8144_06700;Name=A8144_06700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06700
LYPH01000017.1	Protein Homology	CDS	50691	51125	.	+	0	ID=cds-OAR21370.1;Parent=gene-A8144_06700;Dbxref=NCBI_GP:OAR21370.1;Name=OAR21370.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908717.1;locus_tag=A8144_06700;product=hypothetical protein;protein_id=OAR21370.1;transl_table=11
LYPH01000017.1	Genbank	pseudogene	51329	52802	.	-	.	ID=gene-A8144_06705;Name=A8144_06705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06705;pseudo=true
LYPH01000017.1	Protein Homology	CDS	51329	52802	.	-	0	ID=cds-A8144_06705;Parent=gene-A8144_06705;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003897016.1;locus_tag=A8144_06705;product=apocarotenoid-15%2C15'-oxygenase;pseudo=true;transl_table=11
LYPH01000017.1	Genbank	gene	53117	53353	.	-	.	ID=gene-A8144_06710;Name=A8144_06710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06710
LYPH01000017.1	GeneMarkS+	CDS	53117	53353	.	-	0	ID=cds-OAR21371.1;Parent=gene-A8144_06710;Dbxref=NCBI_GP:OAR21371.1;Name=OAR21371.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06710;product=hypothetical protein;protein_id=OAR21371.1;transl_table=11
LYPH01000017.1	Genbank	gene	55317	55679	.	-	.	ID=gene-A8144_06715;Name=A8144_06715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06715
LYPH01000017.1	GeneMarkS+	CDS	55317	55679	.	-	0	ID=cds-OAR21372.1;Parent=gene-A8144_06715;Dbxref=NCBI_GP:OAR21372.1;Name=OAR21372.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06715;product=hypothetical protein;protein_id=OAR21372.1;transl_table=11
LYPH01000017.1	Genbank	pseudogene	56169	56687	.	+	.	ID=gene-A8144_06720;Name=A8144_06720;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06720;pseudo=true
LYPH01000017.1	Protein Homology	CDS	56169	56687	.	+	0	ID=cds-A8144_06720;Parent=gene-A8144_06720;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015626999.1;locus_tag=A8144_06720;product=GCN5 family acetyltransferase;pseudo=true;transl_table=11
LYPH01000017.1	Genbank	gene	56991	57063	.	-	.	ID=gene-A8144_06725;Name=A8144_06725;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_06725
LYPH01000017.1	tRNAscan-SE	tRNA	56991	57063	.	-	.	ID=rna-A8144_06725;Parent=gene-A8144_06725;anticodon=(pos:complement(57028..57030));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_06725;product=tRNA-Arg
LYPH01000017.1	tRNAscan-SE	exon	56991	57063	.	-	.	ID=exon-A8144_06725-1;Parent=rna-A8144_06725;anticodon=(pos:complement(57028..57030));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_06725;product=tRNA-Arg
LYPH01000017.1	Genbank	gene	58471	58671	.	+	.	ID=gene-A8144_06730;Name=A8144_06730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06730
LYPH01000017.1	GeneMarkS+	CDS	58471	58671	.	+	0	ID=cds-OAR21373.1;Parent=gene-A8144_06730;Dbxref=NCBI_GP:OAR21373.1;Name=OAR21373.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06730;product=hypothetical protein;protein_id=OAR21373.1;transl_table=11
##sequence-region LYPH01000018.1 1 53676
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000018.1	Genbank	region	1	53676	.	+	.	ID=LYPH01000018.1:1..53676;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000018.1	Genbank	pseudogene	1	2160	.	-	.	ID=gene-A8144_06735;Name=A8144_06735;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06735;pseudo=true
LYPH01000018.1	Protein Homology	CDS	1	2160	.	-	0	ID=cds-A8144_06735;Parent=gene-A8144_06735;Note=incomplete%3B too short partial abutting assembly gap%3B missing stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907524.1;locus_tag=A8144_06735;product=polyketide synthase;pseudo=true;transl_table=11
LYPH01000018.1	Genbank	gene	2172	4061	.	-	.	ID=gene-A8144_06740;Name=A8144_06740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06740
LYPH01000018.1	Protein Homology	CDS	2172	4061	.	-	0	ID=cds-OAR21299.1;Parent=gene-A8144_06740;Dbxref=NCBI_GP:OAR21299.1;Name=OAR21299.1;Note=activates fatty acids by binding to coenzyme A;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007166823.1;locus_tag=A8144_06740;product=fatty-acid--CoA ligase;protein_id=OAR21299.1;transl_table=11
LYPH01000018.1	Genbank	gene	4298	5308	.	-	.	ID=gene-A8144_06745;Name=A8144_06745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06745
LYPH01000018.1	Protein Homology	CDS	4298	5308	.	-	0	ID=cds-OAR21300.1;Parent=gene-A8144_06745;Dbxref=NCBI_GP:OAR21300.1;Name=OAR21300.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907522.1;locus_tag=A8144_06745;product=cutinase;protein_id=OAR21300.1;transl_table=11
LYPH01000018.1	Genbank	gene	5463	6368	.	-	.	ID=gene-A8144_06750;Name=A8144_06750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06750
LYPH01000018.1	Protein Homology	CDS	5463	6368	.	-	0	ID=cds-OAR21301.1;Parent=gene-A8144_06750;Dbxref=NCBI_GP:OAR21301.1;Name=OAR21301.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003876950.1;locus_tag=A8144_06750;product=hypothetical protein;protein_id=OAR21301.1;transl_table=11
LYPH01000018.1	Genbank	gene	6529	7521	.	-	.	ID=gene-A8144_06755;Name=A8144_06755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06755
LYPH01000018.1	Protein Homology	CDS	6529	7521	.	-	0	ID=cds-OAR21302.1;Parent=gene-A8144_06755;Dbxref=NCBI_GP:OAR21302.1;Name=OAR21302.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q05861.3;locus_tag=A8144_06755;product=diacylglycerol acyltransferase/mycolyltransferase Ag85A;protein_id=OAR21302.1;transl_table=11
LYPH01000018.1	Genbank	gene	7910	9859	.	-	.	ID=gene-A8144_06760;Name=A8144_06760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06760
LYPH01000018.1	Protein Homology	CDS	7910	9859	.	-	0	ID=cds-OAR21331.1;Parent=gene-A8144_06760;Dbxref=NCBI_GP:OAR21331.1;Name=OAR21331.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907519.1;locus_tag=A8144_06760;product=hypothetical protein;protein_id=OAR21331.1;transl_table=11
LYPH01000018.1	Genbank	gene	9900	10808	.	-	.	ID=gene-A8144_06765;Name=A8144_06765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06765
LYPH01000018.1	Protein Homology	CDS	9900	10808	.	-	0	ID=cds-OAR21303.1;Parent=gene-A8144_06765;Dbxref=NCBI_GP:OAR21303.1;Name=OAR21303.1;Note=catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007166828.1;locus_tag=A8144_06765;product=phosphoribose diphosphate--decaprenyl-phosphate phosphoribosyltransferase;protein_id=OAR21303.1;transl_table=11
LYPH01000018.1	Genbank	gene	10805	11383	.	-	.	ID=gene-A8144_06770;Name=A8144_06770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06770
LYPH01000018.1	Protein Homology	CDS	10805	11383	.	-	0	ID=cds-OAR21304.1;Parent=gene-A8144_06770;Dbxref=NCBI_GP:OAR21304.1;Name=OAR21304.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907517.1;locus_tag=A8144_06770;product=hypothetical protein;protein_id=OAR21304.1;transl_table=11
LYPH01000018.1	Genbank	gene	11376	13307	.	-	.	ID=gene-A8144_06775;Name=A8144_06775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06775
LYPH01000018.1	Protein Homology	CDS	11376	13307	.	-	0	ID=cds-OAR21305.1;Parent=gene-A8144_06775;Dbxref=NCBI_GP:OAR21305.1;Name=OAR21305.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907516.1;locus_tag=A8144_06775;product=glycosyl transferase;protein_id=OAR21305.1;transl_table=11
LYPH01000018.1	Genbank	gene	13307	14548	.	-	.	ID=gene-A8144_06780;Name=A8144_06780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06780
LYPH01000018.1	Protein Homology	CDS	13307	14548	.	-	0	ID=cds-OAR21306.1;Parent=gene-A8144_06780;Dbxref=NCBI_GP:OAR21306.1;Name=OAR21306.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907515.1;locus_tag=A8144_06780;product=UDP-galactopyranose mutase;protein_id=OAR21306.1;transl_table=11
LYPH01000018.1	Genbank	gene	14815	15525	.	+	.	ID=gene-A8144_06785;Name=A8144_06785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06785
LYPH01000018.1	Protein Homology	CDS	14815	15525	.	+	0	ID=cds-OAR21307.1;Parent=gene-A8144_06785;Dbxref=NCBI_GP:OAR21307.1;Name=OAR21307.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P19361.1;locus_tag=A8144_06785;product=hypothetical protein;protein_id=OAR21307.1;transl_table=11
LYPH01000018.1	Genbank	gene	17504	18349	.	-	.	ID=gene-A8144_06790;Name=A8144_06790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06790
LYPH01000018.1	Protein Homology	CDS	17504	18349	.	-	0	ID=cds-OAR21308.1;Parent=gene-A8144_06790;Dbxref=NCBI_GP:OAR21308.1;Name=OAR21308.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907513.1;locus_tag=A8144_06790;product=HAD family hydrolase;protein_id=OAR21308.1;transl_table=11
LYPH01000018.1	Genbank	gene	18384	18770	.	-	.	ID=gene-A8144_06795;Name=A8144_06795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06795
LYPH01000018.1	GeneMarkS+	CDS	18384	18770	.	-	0	ID=cds-OAR21309.1;Parent=gene-A8144_06795;Dbxref=NCBI_GP:OAR21309.1;Name=OAR21309.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06795;product=hypothetical protein;protein_id=OAR21309.1;transl_table=11
LYPH01000018.1	Genbank	gene	18856	19629	.	-	.	ID=gene-A8144_06800;Name=A8144_06800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06800
LYPH01000018.1	Protein Homology	CDS	18856	19629	.	-	0	ID=cds-OAR21310.1;Parent=gene-A8144_06800;Dbxref=NCBI_GP:OAR21310.1;Name=OAR21310.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907512.1;locus_tag=A8144_06800;product=acyltransferase;protein_id=OAR21310.1;transl_table=11
LYPH01000018.1	Genbank	pseudogene	19687	20426	.	+	.	ID=gene-A8144_06805;Name=A8144_06805;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06805;pseudo=true
LYPH01000018.1	Protein Homology	CDS	19687	20426	.	+	0	ID=cds-A8144_06805;Parent=gene-A8144_06805;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015291755.1;locus_tag=A8144_06805;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000018.1	Genbank	gene	20761	20970	.	+	.	ID=gene-A8144_06810;Name=A8144_06810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06810
LYPH01000018.1	GeneMarkS+	CDS	20761	20970	.	+	0	ID=cds-OAR21311.1;Parent=gene-A8144_06810;Dbxref=NCBI_GP:OAR21311.1;Name=OAR21311.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06810;product=hypothetical protein;protein_id=OAR21311.1;transl_table=11
LYPH01000018.1	Genbank	gene	21083	21286	.	+	.	ID=gene-A8144_06815;Name=A8144_06815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06815
LYPH01000018.1	GeneMarkS+	CDS	21083	21286	.	+	0	ID=cds-OAR21312.1;Parent=gene-A8144_06815;Dbxref=NCBI_GP:OAR21312.1;Name=OAR21312.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06815;product=hypothetical protein;protein_id=OAR21312.1;transl_table=11
LYPH01000018.1	Genbank	gene	21376	21639	.	+	.	ID=gene-A8144_06820;Name=A8144_06820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06820
LYPH01000018.1	GeneMarkS+	CDS	21376	21639	.	+	0	ID=cds-OAR21313.1;Parent=gene-A8144_06820;Dbxref=NCBI_GP:OAR21313.1;Name=OAR21313.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06820;product=hypothetical protein;protein_id=OAR21313.1;transl_table=11
LYPH01000018.1	Genbank	gene	25303	26556	.	-	.	ID=gene-A8144_06825;Name=A8144_06825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06825
LYPH01000018.1	Protein Homology	CDS	25303	26556	.	-	0	ID=cds-OAR21314.1;Parent=gene-A8144_06825;Dbxref=NCBI_GP:OAR21314.1;Name=OAR21314.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CDC1.1;locus_tag=A8144_06825;product=serine--tRNA ligase;protein_id=OAR21314.1;transl_table=11
LYPH01000018.1	Genbank	gene	26678	28030	.	+	.	ID=gene-A8144_06830;Name=A8144_06830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06830
LYPH01000018.1	Protein Homology	CDS	26678	28030	.	+	0	ID=cds-OAR21332.1;Parent=gene-A8144_06830;Dbxref=NCBI_GP:OAR21332.1;Name=OAR21332.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907510.1;locus_tag=A8144_06830;product=hypothetical protein;protein_id=OAR21332.1;transl_table=11
LYPH01000018.1	Genbank	pseudogene	28027	28310	.	+	.	ID=gene-A8144_06835;Name=A8144_06835;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06835;pseudo=true
LYPH01000018.1	Protein Homology	CDS	28027	28310	.	+	0	ID=cds-A8144_06835;Parent=gene-A8144_06835;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011562406.1;locus_tag=A8144_06835;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000018.1	Genbank	gene	28593	29288	.	-	.	ID=gene-A8144_06840;Name=A8144_06840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06840
LYPH01000018.1	Protein Homology	CDS	28593	29288	.	-	0	ID=cds-OAR21315.1;Parent=gene-A8144_06840;Dbxref=NCBI_GP:OAR21315.1;Name=OAR21315.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_013831068.1;locus_tag=A8144_06840;product=phosphoglycerate mutase;protein_id=OAR21315.1;transl_table=11
LYPH01000018.1	Genbank	gene	29285	30247	.	-	.	ID=gene-A8144_06845;Name=A8144_06845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06845
LYPH01000018.1	Protein Homology	CDS	29285	30247	.	-	0	ID=cds-OAR21333.1;Parent=gene-A8144_06845;Dbxref=NCBI_GP:OAR21333.1;Name=OAR21333.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014383632.1;locus_tag=A8144_06845;product=prephenate dehydratase;protein_id=OAR21333.1;transl_table=11
LYPH01000018.1	Genbank	gene	30547	30849	.	+	.	ID=gene-A8144_06850;Name=A8144_06850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06850
LYPH01000018.1	GeneMarkS+	CDS	30547	30849	.	+	0	ID=cds-OAR21316.1;Parent=gene-A8144_06850;Dbxref=NCBI_GP:OAR21316.1;Name=OAR21316.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06850;product=hypothetical protein;protein_id=OAR21316.1;transl_table=11
LYPH01000018.1	Genbank	gene	30911	31096	.	-	.	ID=gene-A8144_06855;Name=A8144_06855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06855
LYPH01000018.1	GeneMarkS+	CDS	30911	31096	.	-	0	ID=cds-OAR21317.1;Parent=gene-A8144_06855;Dbxref=NCBI_GP:OAR21317.1;Name=OAR21317.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06855;product=hypothetical protein;protein_id=OAR21317.1;transl_table=11
LYPH01000018.1	Genbank	pseudogene	31153	31973	.	+	.	ID=gene-A8144_06860;Name=A8144_06860;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06860;pseudo=true
LYPH01000018.1	Protein Homology	CDS	31153	31973	.	+	0	ID=cds-A8144_06860;Parent=gene-A8144_06860;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003931311.1;locus_tag=A8144_06860;product=LytTR family transcriptional regulator;pseudo=true;transl_table=11
LYPH01000018.1	Genbank	gene	32731	33546	.	-	.	ID=gene-A8144_06865;Name=A8144_06865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06865
LYPH01000018.1	Protein Homology	CDS	32731	33546	.	-	0	ID=cds-OAR21334.1;Parent=gene-A8144_06865;Dbxref=NCBI_GP:OAR21334.1;Name=OAR21334.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907507.1;locus_tag=A8144_06865;product=glycerophosphodiester phosphodiesterase;protein_id=OAR21334.1;transl_table=11
LYPH01000018.1	Genbank	gene	33552	34586	.	-	.	ID=gene-A8144_06870;Name=A8144_06870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06870
LYPH01000018.1	Protein Homology	CDS	33552	34586	.	-	0	ID=cds-OAR21318.1;Parent=gene-A8144_06870;Dbxref=NCBI_GP:OAR21318.1;Name=OAR21318.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907506.1;locus_tag=A8144_06870;product=hypothetical protein;protein_id=OAR21318.1;transl_table=11
LYPH01000018.1	Genbank	gene	35408	36031	.	+	.	ID=gene-A8144_06875;Name=A8144_06875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06875
LYPH01000018.1	Protein Homology	CDS	35408	36031	.	+	0	ID=cds-OAR21319.1;Parent=gene-A8144_06875;Dbxref=NCBI_GP:OAR21319.1;Name=OAR21319.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P13367.3;locus_tag=A8144_06875;product=superoxide dismutase;protein_id=OAR21319.1;transl_table=11
LYPH01000018.1	Genbank	gene	36232	36765	.	+	.	ID=gene-A8144_06880;Name=A8144_06880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06880
LYPH01000018.1	Protein Homology	CDS	36232	36765	.	+	0	ID=cds-OAR21320.1;Parent=gene-A8144_06880;Dbxref=NCBI_GP:OAR21320.1;Name=OAR21320.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907504.1;locus_tag=A8144_06880;product=peptidase;protein_id=OAR21320.1;transl_table=11
LYPH01000018.1	Genbank	gene	37119	37382	.	+	.	ID=gene-A8144_06885;Name=A8144_06885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06885
LYPH01000018.1	Protein Homology	CDS	37119	37382	.	+	0	ID=cds-OAR21321.1;Parent=gene-A8144_06885;Dbxref=NCBI_GP:OAR21321.1;Name=OAR21321.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907503.1;locus_tag=A8144_06885;product=hypothetical protein;protein_id=OAR21321.1;transl_table=11
LYPH01000018.1	Genbank	gene	37759	38157	.	+	.	ID=gene-A8144_06890;Name=A8144_06890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06890
LYPH01000018.1	Protein Homology	CDS	37759	38157	.	+	0	ID=cds-OAR21322.1;Parent=gene-A8144_06890;Dbxref=NCBI_GP:OAR21322.1;Name=OAR21322.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907502.1;locus_tag=A8144_06890;product=secretion protein EspR;protein_id=OAR21322.1;transl_table=11
LYPH01000018.1	Genbank	gene	38342	39058	.	+	.	ID=gene-A8144_06895;Name=A8144_06895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06895
LYPH01000018.1	Protein Homology	CDS	38342	39058	.	+	0	ID=cds-OAR21323.1;Parent=gene-A8144_06895;Dbxref=NCBI_GP:OAR21323.1;Name=OAR21323.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907501.1;locus_tag=A8144_06895;product=hypothetical protein;protein_id=OAR21323.1;transl_table=11
LYPH01000018.1	Genbank	gene	39572	39937	.	+	.	ID=gene-A8144_06900;Name=A8144_06900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06900
LYPH01000018.1	Protein Homology	CDS	39572	39937	.	+	0	ID=cds-OAR21324.1;Parent=gene-A8144_06900;Dbxref=NCBI_GP:OAR21324.1;Name=OAR21324.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907500.1;locus_tag=A8144_06900;product=nucleoid-structuring protein H-NS;protein_id=OAR21324.1;transl_table=11
LYPH01000018.1	Genbank	gene	39959	40432	.	+	.	ID=gene-A8144_06905;Name=A8144_06905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06905
LYPH01000018.1	Protein Homology	CDS	39959	40432	.	+	0	ID=cds-OAR21325.1;Parent=gene-A8144_06905;Dbxref=NCBI_GP:OAR21325.1;Name=OAR21325.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CDD2.1;locus_tag=A8144_06905;product=ribonuclease;protein_id=OAR21325.1;transl_table=11
LYPH01000018.1	Genbank	gene	40513	41997	.	-	.	ID=gene-A8144_06910;Name=A8144_06910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06910
LYPH01000018.1	Protein Homology	CDS	40513	41997	.	-	0	ID=cds-OAR21326.1;Parent=gene-A8144_06910;Dbxref=NCBI_GP:OAR21326.1;Name=OAR21326.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907498.1;locus_tag=A8144_06910;product=FAD-containing monooxygenase EthA;protein_id=OAR21326.1;transl_table=11
LYPH01000018.1	Genbank	gene	42063	42710	.	+	.	ID=gene-A8144_06915;Name=A8144_06915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06915
LYPH01000018.1	Protein Homology	CDS	42063	42710	.	+	0	ID=cds-OAR21335.1;Parent=gene-A8144_06915;Dbxref=NCBI_GP:OAR21335.1;Name=OAR21335.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012396904.1;locus_tag=A8144_06915;product=TetR family transcriptional regulator;protein_id=OAR21335.1;transl_table=11
LYPH01000018.1	Genbank	gene	43254	43478	.	-	.	ID=gene-A8144_06920;Name=A8144_06920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06920
LYPH01000018.1	GeneMarkS+	CDS	43254	43478	.	-	0	ID=cds-OAR21327.1;Parent=gene-A8144_06920;Dbxref=NCBI_GP:OAR21327.1;Name=OAR21327.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06920;product=hypothetical protein;protein_id=OAR21327.1;transl_table=11
LYPH01000018.1	Genbank	gene	44927	46393	.	-	.	ID=gene-A8144_06925;Name=gltD;gbkey=Gene;gene=gltD;gene_biotype=protein_coding;locus_tag=A8144_06925
LYPH01000018.1	Protein Homology	CDS	44927	46393	.	-	0	ID=cds-OAR21328.1;Parent=gene-A8144_06925;Dbxref=NCBI_GP:OAR21328.1;Name=OAR21328.1;Note=glutamate synthase is composed of subunits alpha and beta%3B beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase%3B provides electrons to the alpha subunit%2C which binds L-glutamine and 2-oxoglutarate and forms L-glutamate;gbkey=CDS;gene=gltD;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007166879.1;locus_tag=A8144_06925;product=glutamate synthase;protein_id=OAR21328.1;transl_table=11
LYPH01000018.1	Genbank	gene	46386	50969	.	-	.	ID=gene-A8144_06930;Name=A8144_06930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06930
LYPH01000018.1	Protein Homology	CDS	46386	50969	.	-	0	ID=cds-OAR21329.1;Parent=gene-A8144_06930;Dbxref=NCBI_GP:OAR21329.1;Name=OAR21329.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007771849.1;locus_tag=A8144_06930;product=glutamate synthase subunit alpha;protein_id=OAR21329.1;transl_table=11
LYPH01000018.1	Genbank	gene	52452	52757	.	-	.	ID=gene-A8144_06935;Name=A8144_06935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06935
LYPH01000018.1	GeneMarkS+	CDS	52452	52757	.	-	0	ID=cds-OAR21330.1;Parent=gene-A8144_06935;Dbxref=NCBI_GP:OAR21330.1;Name=OAR21330.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06935;product=hypothetical protein;protein_id=OAR21330.1;transl_table=11
##sequence-region LYPH01000019.1 1 52770
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000019.1	Genbank	region	1	52770	.	+	.	ID=LYPH01000019.1:1..52770;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000019.1	Genbank	gene	528	1850	.	-	.	ID=gene-A8144_06940;Name=A8144_06940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06940
LYPH01000019.1	Protein Homology	CDS	528	1850	.	-	0	ID=cds-OAR21265.1;Parent=gene-A8144_06940;Dbxref=NCBI_GP:OAR21265.1;Name=OAR21265.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908280.1;locus_tag=A8144_06940;product=hypothetical protein;protein_id=OAR21265.1;transl_table=11
LYPH01000019.1	Genbank	gene	1870	3447	.	-	.	ID=gene-A8144_06945;Name=A8144_06945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06945
LYPH01000019.1	Protein Homology	CDS	1870	3447	.	-	0	ID=cds-OAR21266.1;Parent=gene-A8144_06945;Dbxref=NCBI_GP:OAR21266.1;Name=OAR21266.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908281.1;locus_tag=A8144_06945;product=protease;protein_id=OAR21266.1;transl_table=11
LYPH01000019.1	Genbank	gene	3461	4267	.	-	.	ID=gene-A8144_06950;Name=A8144_06950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06950
LYPH01000019.1	Protein Homology	CDS	3461	4267	.	-	0	ID=cds-OAR21267.1;Parent=gene-A8144_06950;Dbxref=NCBI_GP:OAR21267.1;Name=OAR21267.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908282.1;locus_tag=A8144_06950;product=hypothetical protein;protein_id=OAR21267.1;transl_table=11
LYPH01000019.1	Genbank	pseudogene	4303	5413	.	+	.	ID=gene-A8144_06955;Name=A8144_06955;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_06955;pseudo=true
LYPH01000019.1	Protein Homology	CDS	4303	5413	.	+	0	ID=cds-A8144_06955;Parent=gene-A8144_06955;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014382904.1;locus_tag=A8144_06955;product=ATPase;pseudo=true;transl_table=11
LYPH01000019.1	Genbank	gene	6727	6930	.	-	.	ID=gene-A8144_06960;Name=A8144_06960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06960
LYPH01000019.1	GeneMarkS+	CDS	6727	6930	.	-	0	ID=cds-OAR21268.1;Parent=gene-A8144_06960;Dbxref=NCBI_GP:OAR21268.1;Name=OAR21268.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06960;product=hypothetical protein;protein_id=OAR21268.1;transl_table=11
LYPH01000019.1	Genbank	gene	7455	7529	.	-	.	ID=gene-A8144_06965;Name=A8144_06965;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_06965
LYPH01000019.1	tRNAscan-SE	tRNA	7455	7529	.	-	.	ID=rna-A8144_06965;Parent=gene-A8144_06965;anticodon=(pos:complement(7495..7497));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_06965;product=tRNA-Val
LYPH01000019.1	tRNAscan-SE	exon	7455	7529	.	-	.	ID=exon-A8144_06965-1;Parent=rna-A8144_06965;anticodon=(pos:complement(7495..7497));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_06965;product=tRNA-Val
LYPH01000019.1	Genbank	gene	7544	7617	.	-	.	ID=gene-A8144_06970;Name=A8144_06970;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_06970
LYPH01000019.1	tRNAscan-SE	tRNA	7544	7617	.	-	.	ID=rna-A8144_06970;Parent=gene-A8144_06970;anticodon=(pos:complement(7583..7585));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_06970;product=tRNA-Cys
LYPH01000019.1	tRNAscan-SE	exon	7544	7617	.	-	.	ID=exon-A8144_06970-1;Parent=rna-A8144_06970;anticodon=(pos:complement(7583..7585));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_06970;product=tRNA-Cys
LYPH01000019.1	Genbank	gene	7643	7718	.	-	.	ID=gene-A8144_06975;Name=A8144_06975;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_06975
LYPH01000019.1	tRNAscan-SE	tRNA	7643	7718	.	-	.	ID=rna-A8144_06975;Parent=gene-A8144_06975;anticodon=(pos:complement(7683..7685));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_06975;product=tRNA-Gly
LYPH01000019.1	tRNAscan-SE	exon	7643	7718	.	-	.	ID=exon-A8144_06975-1;Parent=rna-A8144_06975;anticodon=(pos:complement(7683..7685));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_06975;product=tRNA-Gly
LYPH01000019.1	Genbank	gene	7897	7971	.	+	.	ID=gene-A8144_06980;Name=A8144_06980;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_06980
LYPH01000019.1	tRNAscan-SE	tRNA	7897	7971	.	+	.	ID=rna-A8144_06980;Parent=gene-A8144_06980;anticodon=(pos:7929..7931);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_06980;product=tRNA-Val
LYPH01000019.1	tRNAscan-SE	exon	7897	7971	.	+	.	ID=exon-A8144_06980-1;Parent=rna-A8144_06980;anticodon=(pos:7929..7931);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_06980;product=tRNA-Val
LYPH01000019.1	Genbank	gene	8061	8321	.	-	.	ID=gene-A8144_06985;Name=A8144_06985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06985
LYPH01000019.1	Protein Homology	CDS	8061	8321	.	-	0	ID=cds-OAR21269.1;Parent=gene-A8144_06985;Dbxref=NCBI_GP:OAR21269.1;Name=OAR21269.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908283.1;locus_tag=A8144_06985;product=hypothetical protein;protein_id=OAR21269.1;transl_table=11
LYPH01000019.1	Genbank	gene	9383	9571	.	+	.	ID=gene-A8144_06990;Name=A8144_06990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06990
LYPH01000019.1	GeneMarkS+	CDS	9383	9571	.	+	0	ID=cds-OAR21270.1;Parent=gene-A8144_06990;Dbxref=NCBI_GP:OAR21270.1;Name=OAR21270.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_06990;product=hypothetical protein;protein_id=OAR21270.1;transl_table=11
LYPH01000019.1	Genbank	gene	11192	14200	.	+	.	ID=gene-A8144_06995;Name=A8144_06995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_06995
LYPH01000019.1	Protein Homology	CDS	11192	14200	.	+	0	ID=cds-OAR21271.1;Parent=gene-A8144_06995;Dbxref=NCBI_GP:OAR21271.1;Name=OAR21271.1;Note=activates fatty acids by binding to coenzyme A;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908284.1;locus_tag=A8144_06995;product=acyl-CoA synthetase;protein_id=OAR21271.1;transl_table=11
LYPH01000019.1	Genbank	gene	14193	14426	.	+	.	ID=gene-A8144_07000;Name=A8144_07000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07000
LYPH01000019.1	Protein Homology	CDS	14193	14426	.	+	0	ID=cds-OAR21272.1;Parent=gene-A8144_07000;Dbxref=NCBI_GP:OAR21272.1;Name=OAR21272.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908285.1;locus_tag=A8144_07000;product=hypothetical protein;protein_id=OAR21272.1;transl_table=11
LYPH01000019.1	Genbank	pseudogene	15017	15684	.	-	.	ID=gene-A8144_07005;Name=A8144_07005;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07005;pseudo=true
LYPH01000019.1	Protein Homology	CDS	15017	15684	.	-	0	ID=cds-A8144_07005;Parent=gene-A8144_07005;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007775982.1;locus_tag=A8144_07005;product=antibiotic ABC transporter permease;pseudo=true;transl_table=11
LYPH01000019.1	Genbank	pseudogene	15759	16470	.	-	.	ID=gene-A8144_07010;Name=A8144_07010;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07010;pseudo=true
LYPH01000019.1	Protein Homology	CDS	15759	16470	.	-	0	ID=cds-A8144_07010;Parent=gene-A8144_07010;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009977263.1;locus_tag=A8144_07010;product=multidrug ABC transporter ATP-binding protein;pseudo=true;transl_table=11
LYPH01000019.1	Genbank	gene	16599	17243	.	+	.	ID=gene-A8144_07015;Name=A8144_07015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07015
LYPH01000019.1	Protein Homology	CDS	16599	17243	.	+	0	ID=cds-OAR21294.1;Parent=gene-A8144_07015;Dbxref=NCBI_GP:OAR21294.1;Name=OAR21294.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O05678.2;locus_tag=A8144_07015;product=3-methyladenine DNA glycosylase;protein_id=OAR21294.1;transl_table=11
LYPH01000019.1	Genbank	gene	17254	18534	.	+	.	ID=gene-A8144_07020;Name=A8144_07020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07020
LYPH01000019.1	Protein Homology	CDS	17254	18534	.	+	0	ID=cds-OAR21295.1;Parent=gene-A8144_07020;Dbxref=NCBI_GP:OAR21295.1;Name=OAR21295.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49900.3;locus_tag=A8144_07020;product=tyrosine--tRNA ligase;protein_id=OAR21295.1;transl_table=11
LYPH01000019.1	Genbank	pseudogene	18560	19989	.	-	.	ID=gene-A8144_07025;Name=A8144_07025;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07025;pseudo=true
LYPH01000019.1	Protein Homology	CDS	18560	19989	.	-	0	ID=cds-A8144_07025;Parent=gene-A8144_07025;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020787626.1;locus_tag=A8144_07025;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000019.1	Genbank	gene	20184	20438	.	+	.	ID=gene-A8144_07030;Name=A8144_07030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07030
LYPH01000019.1	GeneMarkS+	CDS	20184	20438	.	+	0	ID=cds-OAR21273.1;Parent=gene-A8144_07030;Dbxref=NCBI_GP:OAR21273.1;Name=OAR21273.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07030;product=hypothetical protein;protein_id=OAR21273.1;transl_table=11
LYPH01000019.1	Genbank	gene	22214	22597	.	-	.	ID=gene-A8144_07035;Name=A8144_07035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07035
LYPH01000019.1	GeneMarkS+	CDS	22214	22597	.	-	0	ID=cds-OAR21274.1;Parent=gene-A8144_07035;Dbxref=NCBI_GP:OAR21274.1;Name=OAR21274.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07035;product=hypothetical protein;protein_id=OAR21274.1;transl_table=11
LYPH01000019.1	Genbank	gene	22631	22987	.	+	.	ID=gene-A8144_07040;Name=A8144_07040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07040
LYPH01000019.1	GeneMarkS+	CDS	22631	22987	.	+	0	ID=cds-OAR21275.1;Parent=gene-A8144_07040;Dbxref=NCBI_GP:OAR21275.1;Name=OAR21275.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07040;product=hypothetical protein;protein_id=OAR21275.1;transl_table=11
LYPH01000019.1	Genbank	gene	22995	23180	.	+	.	ID=gene-A8144_07045;Name=A8144_07045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07045
LYPH01000019.1	Protein Homology	CDS	22995	23180	.	+	0	ID=cds-OAR21276.1;Parent=gene-A8144_07045;Dbxref=NCBI_GP:OAR21276.1;Name=OAR21276.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003876314.1;locus_tag=A8144_07045;product=hypothetical protein;protein_id=OAR21276.1;transl_table=11
LYPH01000019.1	Genbank	gene	23188	23997	.	+	.	ID=gene-A8144_07050;Name=A8144_07050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07050
LYPH01000019.1	Protein Homology	CDS	23188	23997	.	+	0	ID=cds-OAR21277.1;Parent=gene-A8144_07050;Dbxref=NCBI_GP:OAR21277.1;Name=OAR21277.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003876315.1;locus_tag=A8144_07050;product=16S/23S rRNA (cytidine-2'-O)-methyltransferase;protein_id=OAR21277.1;transl_table=11
LYPH01000019.1	Genbank	gene	23994	24929	.	+	.	ID=gene-A8144_07055;Name=A8144_07055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07055
LYPH01000019.1	Protein Homology	CDS	23994	24929	.	+	0	ID=cds-OAR21278.1;Parent=gene-A8144_07055;Dbxref=NCBI_GP:OAR21278.1;Name=OAR21278.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49897.1;locus_tag=A8144_07055;product=NAD kinase;protein_id=OAR21278.1;transl_table=11
LYPH01000019.1	Genbank	gene	24953	26716	.	+	.	ID=gene-A8144_07060;Name=A8144_07060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07060
LYPH01000019.1	Protein Homology	CDS	24953	26716	.	+	0	ID=cds-OAR21279.1;Parent=gene-A8144_07060;Dbxref=NCBI_GP:OAR21279.1;Name=OAR21279.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49896.1;locus_tag=A8144_07060;product=DNA repair protein RecN;protein_id=OAR21279.1;transl_table=11
LYPH01000019.1	Genbank	gene	26902	28083	.	+	.	ID=gene-A8144_07065;Name=A8144_07065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07065
LYPH01000019.1	Protein Homology	CDS	26902	28083	.	+	0	ID=cds-OAR21280.1;Parent=gene-A8144_07065;Dbxref=NCBI_GP:OAR21280.1;Name=OAR21280.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014815886.1;locus_tag=A8144_07065;product=thiamine pyrophosphokinase;protein_id=OAR21280.1;transl_table=11
LYPH01000019.1	Genbank	gene	28105	29058	.	+	.	ID=gene-A8144_07070;Name=A8144_07070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07070
LYPH01000019.1	Protein Homology	CDS	28105	29058	.	+	0	ID=cds-OAR21281.1;Parent=gene-A8144_07070;Dbxref=NCBI_GP:OAR21281.1;Name=OAR21281.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008257565.1;locus_tag=A8144_07070;product=channel-forming protein;protein_id=OAR21281.1;transl_table=11
LYPH01000019.1	Genbank	gene	29231	31003	.	+	.	ID=gene-A8144_07075;Name=A8144_07075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07075
LYPH01000019.1	Protein Homology	CDS	29231	31003	.	+	0	ID=cds-OAR21296.1;Parent=gene-A8144_07075;Dbxref=NCBI_GP:OAR21296.1;Name=OAR21296.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007169806.1;locus_tag=A8144_07075;product=CTP synthase;protein_id=OAR21296.1;transl_table=11
LYPH01000019.1	Genbank	pseudogene	30996	31620	.	+	.	ID=gene-A8144_07080;Name=A8144_07080;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07080;pseudo=true
LYPH01000019.1	Protein Homology	CDS	30996	31620	.	+	0	ID=cds-A8144_07080;Parent=gene-A8144_07080;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014711857.1;locus_tag=A8144_07080;product=ADP-ribose pyrophosphatase;pseudo=true;transl_table=11
LYPH01000019.1	Genbank	gene	31617	32567	.	+	.	ID=gene-A8144_07085;Name=A8144_07085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07085
LYPH01000019.1	Protein Homology	CDS	31617	32567	.	+	0	ID=cds-OAR21282.1;Parent=gene-A8144_07085;Dbxref=NCBI_GP:OAR21282.1;Name=OAR21282.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007775943.1;locus_tag=A8144_07085;product=site-specific tyrosine recombinase XerD;protein_id=OAR21282.1;transl_table=11
LYPH01000019.1	Genbank	gene	33108	33971	.	+	.	ID=gene-A8144_07090;Name=A8144_07090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07090
LYPH01000019.1	Protein Homology	CDS	33108	33971	.	+	0	ID=cds-OAR21283.1;Parent=gene-A8144_07090;Dbxref=NCBI_GP:OAR21283.1;Name=OAR21283.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003876324.1;locus_tag=A8144_07090;product=chromosome partitioning protein ParA;protein_id=OAR21283.1;transl_table=11
LYPH01000019.1	Genbank	gene	33968	34774	.	+	.	ID=gene-A8144_07095;Name=A8144_07095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07095
LYPH01000019.1	Protein Homology	CDS	33968	34774	.	+	0	ID=cds-OAR21284.1;Parent=gene-A8144_07095;Dbxref=NCBI_GP:OAR21284.1;Name=OAR21284.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908297.1;locus_tag=A8144_07095;product=segregation and condensation protein A;protein_id=OAR21284.1;transl_table=11
LYPH01000019.1	Genbank	gene	34822	35517	.	+	.	ID=gene-A8144_07100;Name=A8144_07100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07100
LYPH01000019.1	Protein Homology	CDS	34822	35517	.	+	0	ID=cds-OAR21298.1;Parent=gene-A8144_07100;Dbxref=NCBI_GP:OAR21298.1;Name=OAR21298.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908298.1;locus_tag=A8144_07100;product=SMC-Scp complex subunit ScpB;protein_id=OAR21298.1;transl_table=11
LYPH01000019.1	Genbank	gene	35517	36287	.	+	.	ID=gene-A8144_07105;Name=A8144_07105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07105
LYPH01000019.1	Protein Homology	CDS	35517	36287	.	+	0	ID=cds-OAR21285.1;Parent=gene-A8144_07105;Dbxref=NCBI_GP:OAR21285.1;Name=OAR21285.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015355366.1;locus_tag=A8144_07105;product=pseudouridine synthase;protein_id=OAR21285.1;transl_table=11
LYPH01000019.1	Genbank	gene	36284	36955	.	+	.	ID=gene-A8144_07110;Name=A8144_07110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07110
LYPH01000019.1	Protein Homology	CDS	36284	36955	.	+	0	ID=cds-OAR21286.1;Parent=gene-A8144_07110;Dbxref=NCBI_GP:OAR21286.1;Name=OAR21286.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49885.1;locus_tag=A8144_07110;product=cytidylate kinase;protein_id=OAR21286.1;transl_table=11
LYPH01000019.1	Genbank	gene	36952	38337	.	+	.	ID=gene-A8144_07115;Name=A8144_07115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07115
LYPH01000019.1	Protein Homology	CDS	36952	38337	.	+	0	ID=cds-OAR21297.1;Parent=gene-A8144_07115;Dbxref=NCBI_GP:OAR21297.1;Name=OAR21297.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014380294.1;locus_tag=A8144_07115;product=ribosome biogenesis GTPase Der;protein_id=OAR21297.1;transl_table=11
LYPH01000019.1	Genbank	pseudogene	41250	42026	.	+	.	ID=gene-A8144_07120;Name=A8144_07120;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07120;pseudo=true
LYPH01000019.1	Protein Homology	CDS	41250	42026	.	+	0	ID=cds-A8144_07120;Parent=gene-A8144_07120;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014588399.1;locus_tag=A8144_07120;product=transcriptional regulator;pseudo=true;transl_table=11
LYPH01000019.1	Genbank	gene	43445	43521	.	+	.	ID=gene-A8144_07125;Name=A8144_07125;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_07125
LYPH01000019.1	tRNAscan-SE	tRNA	43445	43521	.	+	.	ID=rna-A8144_07125;Parent=gene-A8144_07125;anticodon=(pos:43479..43481);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_07125;product=tRNA-Pro
LYPH01000019.1	tRNAscan-SE	exon	43445	43521	.	+	.	ID=exon-A8144_07125-1;Parent=rna-A8144_07125;anticodon=(pos:43479..43481);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_07125;product=tRNA-Pro
LYPH01000019.1	Genbank	gene	43600	43878	.	+	.	ID=gene-A8144_07130;Name=A8144_07130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07130
LYPH01000019.1	GeneMarkS+	CDS	43600	43878	.	+	0	ID=cds-OAR21287.1;Parent=gene-A8144_07130;Dbxref=NCBI_GP:OAR21287.1;Name=OAR21287.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07130;product=hypothetical protein;protein_id=OAR21287.1;transl_table=11
LYPH01000019.1	Genbank	gene	45150	45476	.	-	.	ID=gene-A8144_07135;Name=A8144_07135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07135
LYPH01000019.1	GeneMarkS+	CDS	45150	45476	.	-	0	ID=cds-OAR21288.1;Parent=gene-A8144_07135;Dbxref=NCBI_GP:OAR21288.1;Name=OAR21288.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07135;product=hypothetical protein;protein_id=OAR21288.1;transl_table=11
LYPH01000019.1	Genbank	gene	46381	46809	.	+	.	ID=gene-A8144_07140;Name=A8144_07140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07140
LYPH01000019.1	GeneMarkS+	CDS	46381	46809	.	+	0	ID=cds-OAR21289.1;Parent=gene-A8144_07140;Dbxref=NCBI_GP:OAR21289.1;Name=OAR21289.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07140;product=hypothetical protein;protein_id=OAR21289.1;transl_table=11
LYPH01000019.1	Genbank	pseudogene	47119	48293	.	+	.	ID=gene-A8144_07145;Name=A8144_07145;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07145;pseudo=true
LYPH01000019.1	Protein Homology	CDS	47119	48293	.	+	0	ID=cds-A8144_07145;Parent=gene-A8144_07145;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020787515.1;locus_tag=A8144_07145;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000019.1	Genbank	pseudogene	48297	49538	.	+	.	ID=gene-A8144_07150;Name=A8144_07150;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07150;pseudo=true
LYPH01000019.1	Protein Homology	CDS	48297	49538	.	+	0	ID=cds-A8144_07150;Parent=gene-A8144_07150;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019764512.1;locus_tag=A8144_07150;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000019.1	Genbank	gene	50149	50712	.	+	.	ID=gene-A8144_07155;Name=A8144_07155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07155
LYPH01000019.1	Protein Homology	CDS	50149	50712	.	+	0	ID=cds-OAR21290.1;Parent=gene-A8144_07155;Dbxref=NCBI_GP:OAR21290.1;Name=OAR21290.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908302.1;locus_tag=A8144_07155;product=hypothetical protein;protein_id=OAR21290.1;transl_table=11
LYPH01000019.1	Genbank	gene	51274	51510	.	-	.	ID=gene-A8144_07160;Name=A8144_07160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07160
LYPH01000019.1	GeneMarkS+	CDS	51274	51510	.	-	0	ID=cds-OAR21291.1;Parent=gene-A8144_07160;Dbxref=NCBI_GP:OAR21291.1;Name=OAR21291.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07160;product=hypothetical protein;protein_id=OAR21291.1;transl_table=11
LYPH01000019.1	Genbank	gene	51924	52151	.	+	.	ID=gene-A8144_07165;Name=A8144_07165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07165
LYPH01000019.1	GeneMarkS+	CDS	51924	52151	.	+	0	ID=cds-OAR21292.1;Parent=gene-A8144_07165;Dbxref=NCBI_GP:OAR21292.1;Name=OAR21292.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07165;product=hypothetical protein;protein_id=OAR21292.1;transl_table=11
LYPH01000019.1	Genbank	gene	52351	52590	.	+	.	ID=gene-A8144_07170;Name=A8144_07170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07170
LYPH01000019.1	GeneMarkS+	CDS	52351	52590	.	+	0	ID=cds-OAR21293.1;Parent=gene-A8144_07170;Dbxref=NCBI_GP:OAR21293.1;Name=OAR21293.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07170;product=hypothetical protein;protein_id=OAR21293.1;transl_table=11
##sequence-region LYPH01000020.1 1 51882
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000020.1	Genbank	region	1	51882	.	+	.	ID=LYPH01000020.1:1..51882;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000020.1	Genbank	gene	531	785	.	+	.	ID=gene-A8144_07175;Name=A8144_07175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07175
LYPH01000020.1	Protein Homology	CDS	531	785	.	+	0	ID=cds-OAR21228.1;Parent=gene-A8144_07175;Dbxref=NCBI_GP:OAR21228.1;Name=OAR21228.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010909019.1;locus_tag=A8144_07175;product=hypothetical protein;protein_id=OAR21228.1;transl_table=11
LYPH01000020.1	Genbank	gene	2629	2811	.	-	.	ID=gene-A8144_07180;Name=A8144_07180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07180
LYPH01000020.1	GeneMarkS+	CDS	2629	2811	.	-	0	ID=cds-OAR21229.1;Parent=gene-A8144_07180;Dbxref=NCBI_GP:OAR21229.1;Name=OAR21229.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07180;product=hypothetical protein;protein_id=OAR21229.1;transl_table=11
LYPH01000020.1	Genbank	gene	2961	3716	.	-	.	ID=gene-A8144_07185;Name=A8144_07185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07185
LYPH01000020.1	Protein Homology	CDS	2961	3716	.	-	0	ID=cds-OAR21230.1;Parent=gene-A8144_07185;Dbxref=NCBI_GP:OAR21230.1;Name=OAR21230.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008262156.1;locus_tag=A8144_07185;product=hypothetical protein;protein_id=OAR21230.1;transl_table=11
LYPH01000020.1	Genbank	gene	4184	5116	.	+	.	ID=gene-A8144_07190;Name=A8144_07190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07190
LYPH01000020.1	Protein Homology	CDS	4184	5116	.	+	0	ID=cds-OAR21231.1;Parent=gene-A8144_07190;Dbxref=NCBI_GP:OAR21231.1;Name=OAR21231.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010909017.1;locus_tag=A8144_07190;product=LysR family transcriptional regulator;protein_id=OAR21231.1;transl_table=11
LYPH01000020.1	Genbank	gene	6392	6718	.	+	.	ID=gene-A8144_07195;Name=A8144_07195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07195
LYPH01000020.1	GeneMarkS+	CDS	6392	6718	.	+	0	ID=cds-OAR21232.1;Parent=gene-A8144_07195;Dbxref=NCBI_GP:OAR21232.1;Name=OAR21232.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07195;product=hypothetical protein;protein_id=OAR21232.1;transl_table=11
LYPH01000020.1	Genbank	gene	6985	8631	.	+	.	ID=gene-A8144_07200;Name=A8144_07200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07200
LYPH01000020.1	Protein Homology	CDS	6985	8631	.	+	0	ID=cds-OAR21233.1;Parent=gene-A8144_07200;Dbxref=NCBI_GP:OAR21233.1;Name=OAR21233.1;Note=activates fatty acids by binding to coenzyme A;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010909016.1;locus_tag=A8144_07200;product=acyl-CoA synthetase;protein_id=OAR21233.1;transl_table=11
LYPH01000020.1	Genbank	gene	9198	9476	.	-	.	ID=gene-A8144_07205;Name=A8144_07205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07205
LYPH01000020.1	GeneMarkS+	CDS	9198	9476	.	-	0	ID=cds-OAR21234.1;Parent=gene-A8144_07205;Dbxref=NCBI_GP:OAR21234.1;Name=OAR21234.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07205;product=hypothetical protein;protein_id=OAR21234.1;transl_table=11
LYPH01000020.1	Genbank	gene	9967	10455	.	-	.	ID=gene-A8144_07210;Name=A8144_07210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07210
LYPH01000020.1	GeneMarkS+	CDS	9967	10455	.	-	0	ID=cds-OAR21235.1;Parent=gene-A8144_07210;Dbxref=NCBI_GP:OAR21235.1;Name=OAR21235.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07210;product=hypothetical protein;protein_id=OAR21235.1;transl_table=11
LYPH01000020.1	Genbank	gene	11353	12417	.	+	.	ID=gene-A8144_07215;Name=A8144_07215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07215
LYPH01000020.1	Protein Homology	CDS	11353	12417	.	+	0	ID=cds-OAR21236.1;Parent=gene-A8144_07215;Dbxref=NCBI_GP:OAR21236.1;Name=OAR21236.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010909015.1;locus_tag=A8144_07215;product=serine protease;protein_id=OAR21236.1;transl_table=11
LYPH01000020.1	Genbank	pseudogene	12537	14274	.	+	.	ID=gene-A8144_07220;Name=A8144_07220;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07220;pseudo=true
LYPH01000020.1	Protein Homology	CDS	12537	14274	.	+	0	ID=cds-A8144_07220;Parent=gene-A8144_07220;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O07176.1;locus_tag=A8144_07220;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000020.1	Genbank	gene	14667	14990	.	+	.	ID=gene-A8144_07225;Name=A8144_07225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07225
LYPH01000020.1	GeneMarkS+	CDS	14667	14990	.	+	0	ID=cds-OAR21237.1;Parent=gene-A8144_07225;Dbxref=NCBI_GP:OAR21237.1;Name=OAR21237.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07225;product=hypothetical protein;protein_id=OAR21237.1;transl_table=11
LYPH01000020.1	Genbank	gene	15677	16678	.	-	.	ID=gene-A8144_07230;Name=A8144_07230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07230
LYPH01000020.1	Protein Homology	CDS	15677	16678	.	-	0	ID=cds-OAR21238.1;Parent=gene-A8144_07230;Dbxref=NCBI_GP:OAR21238.1;Name=OAR21238.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q05862.1;locus_tag=A8144_07230;product=diacylglycerol acyltransferase/mycolyltransferase Ag85A;protein_id=OAR21238.1;transl_table=11
LYPH01000020.1	Genbank	gene	17267	17764	.	-	.	ID=gene-A8144_07235;Name=A8144_07235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07235
LYPH01000020.1	Protein Homology	CDS	17267	17764	.	-	0	ID=cds-OAR21239.1;Parent=gene-A8144_07235;Dbxref=NCBI_GP:OAR21239.1;Name=OAR21239.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007769393.1;locus_tag=A8144_07235;product=YfcE family phosphodiesterase;protein_id=OAR21239.1;transl_table=11
LYPH01000020.1	Genbank	gene	18141	18437	.	-	.	ID=gene-A8144_07240;Name=A8144_07240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07240
LYPH01000020.1	GeneMarkS+	CDS	18141	18437	.	-	0	ID=cds-OAR21240.1;Parent=gene-A8144_07240;Dbxref=NCBI_GP:OAR21240.1;Name=OAR21240.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07240;product=hypothetical protein;protein_id=OAR21240.1;transl_table=11
LYPH01000020.1	Genbank	pseudogene	20077	20506	.	-	.	ID=gene-A8144_07245;Name=A8144_07245;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07245;pseudo=true
LYPH01000020.1	Protein Homology	CDS	20077	20506	.	-	0	ID=cds-A8144_07245;Parent=gene-A8144_07245;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009979905.1;locus_tag=A8144_07245;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000020.1	Genbank	gene	20885	21202	.	-	.	ID=gene-A8144_07250;Name=A8144_07250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07250
LYPH01000020.1	Protein Homology	CDS	20885	21202	.	-	0	ID=cds-OAR21264.1;Parent=gene-A8144_07250;Dbxref=NCBI_GP:OAR21264.1;Name=OAR21264.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010909012.1;locus_tag=A8144_07250;product=hypothetical protein;protein_id=OAR21264.1;transl_table=11
LYPH01000020.1	Genbank	pseudogene	21883	23195	.	+	.	ID=gene-A8144_07255;Name=A8144_07255;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07255;pseudo=true
LYPH01000020.1	Protein Homology	CDS	21883	23195	.	+	0	ID=cds-A8144_07255;Parent=gene-A8144_07255;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009953167.1;locus_tag=A8144_07255;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000020.1	Genbank	gene	23392	23586	.	+	.	ID=gene-A8144_07260;Name=A8144_07260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07260
LYPH01000020.1	GeneMarkS+	CDS	23392	23586	.	+	0	ID=cds-OAR21241.1;Parent=gene-A8144_07260;Dbxref=NCBI_GP:OAR21241.1;Name=OAR21241.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07260;product=hypothetical protein;protein_id=OAR21241.1;transl_table=11
LYPH01000020.1	Genbank	gene	23674	23853	.	+	.	ID=gene-A8144_07265;Name=A8144_07265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07265
LYPH01000020.1	GeneMarkS+	CDS	23674	23853	.	+	0	ID=cds-OAR21242.1;Parent=gene-A8144_07265;Dbxref=NCBI_GP:OAR21242.1;Name=OAR21242.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07265;product=hypothetical protein;protein_id=OAR21242.1;transl_table=11
LYPH01000020.1	Genbank	gene	24322	25167	.	+	.	ID=gene-A8144_07270;Name=A8144_07270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07270
LYPH01000020.1	Protein Homology	CDS	24322	25167	.	+	0	ID=cds-OAR21243.1;Parent=gene-A8144_07270;Dbxref=NCBI_GP:OAR21243.1;Name=OAR21243.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009979912.1;locus_tag=A8144_07270;product=polysaccharide deacetylase;protein_id=OAR21243.1;transl_table=11
LYPH01000020.1	Genbank	gene	26145	26576	.	+	.	ID=gene-A8144_07275;Name=A8144_07275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07275
LYPH01000020.1	GeneMarkS+	CDS	26145	26576	.	+	0	ID=cds-OAR21244.1;Parent=gene-A8144_07275;Dbxref=NCBI_GP:OAR21244.1;Name=OAR21244.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07275;product=hypothetical protein;protein_id=OAR21244.1;transl_table=11
LYPH01000020.1	Genbank	gene	26638	26940	.	+	.	ID=gene-A8144_07280;Name=A8144_07280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07280
LYPH01000020.1	GeneMarkS+	CDS	26638	26940	.	+	0	ID=cds-OAR21245.1;Parent=gene-A8144_07280;Dbxref=NCBI_GP:OAR21245.1;Name=OAR21245.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07280;product=hypothetical protein;protein_id=OAR21245.1;transl_table=11
LYPH01000020.1	Genbank	gene	27093	27626	.	-	.	ID=gene-A8144_07285;Name=A8144_07285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07285
LYPH01000020.1	Protein Homology	CDS	27093	27626	.	-	0	ID=cds-OAR21246.1;Parent=gene-A8144_07285;Dbxref=NCBI_GP:OAR21246.1;Name=OAR21246.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCZ3.1;locus_tag=A8144_07285;product=peptide-methionine (S)-S-oxide reductase;protein_id=OAR21246.1;transl_table=11
LYPH01000020.1	Genbank	gene	29051	29449	.	+	.	ID=gene-A8144_07290;Name=A8144_07290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07290
LYPH01000020.1	GeneMarkS+	CDS	29051	29449	.	+	0	ID=cds-OAR21247.1;Parent=gene-A8144_07290;Dbxref=NCBI_GP:OAR21247.1;Name=OAR21247.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07290;product=hypothetical protein;protein_id=OAR21247.1;transl_table=11
LYPH01000020.1	Genbank	gene	29703	29909	.	+	.	ID=gene-A8144_07295;Name=A8144_07295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07295
LYPH01000020.1	GeneMarkS+	CDS	29703	29909	.	+	0	ID=cds-OAR21248.1;Parent=gene-A8144_07295;Dbxref=NCBI_GP:OAR21248.1;Name=OAR21248.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07295;product=hypothetical protein;protein_id=OAR21248.1;transl_table=11
LYPH01000020.1	Genbank	gene	30282	30614	.	+	.	ID=gene-A8144_07300;Name=A8144_07300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07300
LYPH01000020.1	GeneMarkS+	CDS	30282	30614	.	+	0	ID=cds-OAR21249.1;Parent=gene-A8144_07300;Dbxref=NCBI_GP:OAR21249.1;Name=OAR21249.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07300;product=hypothetical protein;protein_id=OAR21249.1;transl_table=11
LYPH01000020.1	Genbank	gene	31274	31627	.	-	.	ID=gene-A8144_07305;Name=A8144_07305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07305
LYPH01000020.1	GeneMarkS+	CDS	31274	31627	.	-	0	ID=cds-OAR21250.1;Parent=gene-A8144_07305;Dbxref=NCBI_GP:OAR21250.1;Name=OAR21250.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07305;product=hypothetical protein;protein_id=OAR21250.1;transl_table=11
LYPH01000020.1	Genbank	pseudogene	31947	32801	.	+	.	ID=gene-A8144_07310;Name=A8144_07310;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07310;pseudo=true
LYPH01000020.1	Protein Homology	CDS	31947	32801	.	+	0	ID=cds-A8144_07310;Parent=gene-A8144_07310;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011557512.1;locus_tag=A8144_07310;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000020.1	Genbank	pseudogene	32906	33468	.	+	.	ID=gene-A8144_07315;Name=A8144_07315;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07315;pseudo=true
LYPH01000020.1	Protein Homology	CDS	32906	33468	.	+	0	ID=cds-A8144_07315;Parent=gene-A8144_07315;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009956645.1;locus_tag=A8144_07315;product=TetR family transcriptional regulator;pseudo=true;transl_table=11
LYPH01000020.1	Genbank	gene	33696	34055	.	+	.	ID=gene-A8144_07320;Name=A8144_07320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07320
LYPH01000020.1	GeneMarkS+	CDS	33696	34055	.	+	0	ID=cds-OAR21251.1;Parent=gene-A8144_07320;Dbxref=NCBI_GP:OAR21251.1;Name=OAR21251.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07320;product=hypothetical protein;protein_id=OAR21251.1;transl_table=11
LYPH01000020.1	Genbank	gene	34092	34316	.	-	.	ID=gene-A8144_07325;Name=A8144_07325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07325
LYPH01000020.1	GeneMarkS+	CDS	34092	34316	.	-	0	ID=cds-OAR21252.1;Parent=gene-A8144_07325;Dbxref=NCBI_GP:OAR21252.1;Name=OAR21252.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07325;product=hypothetical protein;protein_id=OAR21252.1;transl_table=11
LYPH01000020.1	Genbank	gene	34495	35436	.	+	.	ID=gene-A8144_07330;Name=A8144_07330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07330
LYPH01000020.1	Protein Homology	CDS	34495	35436	.	+	0	ID=cds-OAR21253.1;Parent=gene-A8144_07330;Dbxref=NCBI_GP:OAR21253.1;Name=OAR21253.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007167214.1;locus_tag=A8144_07330;product=SAM-dependent methyltransferase;protein_id=OAR21253.1;transl_table=11
LYPH01000020.1	Genbank	gene	35624	37129	.	+	.	ID=gene-A8144_07335;Name=A8144_07335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07335
LYPH01000020.1	Protein Homology	CDS	35624	37129	.	+	0	ID=cds-OAR21254.1;Parent=gene-A8144_07335;Dbxref=NCBI_GP:OAR21254.1;Name=OAR21254.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010909008.1;locus_tag=A8144_07335;product=aldehyde dehydrogenase;protein_id=OAR21254.1;transl_table=11
LYPH01000020.1	Genbank	gene	37729	37935	.	+	.	ID=gene-A8144_07340;Name=A8144_07340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07340
LYPH01000020.1	GeneMarkS+	CDS	37729	37935	.	+	0	ID=cds-OAR21255.1;Parent=gene-A8144_07340;Dbxref=NCBI_GP:OAR21255.1;Name=OAR21255.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07340;product=hypothetical protein;protein_id=OAR21255.1;transl_table=11
LYPH01000020.1	Genbank	gene	39889	40167	.	+	.	ID=gene-A8144_07345;Name=A8144_07345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07345
LYPH01000020.1	GeneMarkS+	CDS	39889	40167	.	+	0	ID=cds-OAR21256.1;Parent=gene-A8144_07345;Dbxref=NCBI_GP:OAR21256.1;Name=OAR21256.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07345;product=hypothetical protein;protein_id=OAR21256.1;transl_table=11
LYPH01000020.1	Genbank	gene	40178	41281	.	+	.	ID=gene-A8144_07350;Name=A8144_07350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07350
LYPH01000020.1	Protein Homology	CDS	40178	41281	.	+	0	ID=cds-OAR21257.1;Parent=gene-A8144_07350;Dbxref=NCBI_GP:OAR21257.1;Name=OAR21257.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010909007.1;locus_tag=A8144_07350;product=NAD(P) transhydrogenase subunit alpha;protein_id=OAR21257.1;transl_table=11
LYPH01000020.1	Genbank	gene	41274	41612	.	+	.	ID=gene-A8144_07355;Name=A8144_07355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07355
LYPH01000020.1	Protein Homology	CDS	41274	41612	.	+	0	ID=cds-OAR21258.1;Parent=gene-A8144_07355;Dbxref=NCBI_GP:OAR21258.1;Name=OAR21258.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010909006.1;locus_tag=A8144_07355;product=NAD(P) transhydrogenase subunit alpha;protein_id=OAR21258.1;transl_table=11
LYPH01000020.1	Genbank	gene	41609	43027	.	+	.	ID=gene-A8144_07360;Name=A8144_07360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07360
LYPH01000020.1	Protein Homology	CDS	41609	43027	.	+	0	ID=cds-OAR21259.1;Parent=gene-A8144_07360;Dbxref=NCBI_GP:OAR21259.1;Name=OAR21259.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003874195.1;locus_tag=A8144_07360;product=NAD(P) transhydrogenase subunit beta;protein_id=OAR21259.1;transl_table=11
LYPH01000020.1	Genbank	gene	45447	46796	.	+	.	ID=gene-A8144_07365;Name=A8144_07365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07365
LYPH01000020.1	Protein Homology	CDS	45447	46796	.	+	0	ID=cds-OAR21260.1;Parent=gene-A8144_07365;Dbxref=NCBI_GP:OAR21260.1;Name=OAR21260.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007769270.1;locus_tag=A8144_07365;product=oxidoreductase;protein_id=OAR21260.1;transl_table=11
LYPH01000020.1	Genbank	gene	47221	47412	.	+	.	ID=gene-A8144_07370;Name=A8144_07370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07370
LYPH01000020.1	GeneMarkS+	CDS	47221	47412	.	+	0	ID=cds-OAR21261.1;Parent=gene-A8144_07370;Dbxref=NCBI_GP:OAR21261.1;Name=OAR21261.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07370;product=hypothetical protein;protein_id=OAR21261.1;transl_table=11
LYPH01000020.1	Genbank	pseudogene	48894	49254	.	+	.	ID=gene-A8144_07375;Name=A8144_07375;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07375;pseudo=true
LYPH01000020.1	Protein Homology	CDS	48894	49254	.	+	0	ID=cds-A8144_07375;Parent=gene-A8144_07375;Note=frameshifted%3B too many ambiguous residues;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O06091.1;locus_tag=A8144_07375;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000020.1	Genbank	gene	49468	49908	.	+	.	ID=gene-A8144_07380;Name=A8144_07380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07380
LYPH01000020.1	Protein Homology	CDS	49468	49908	.	+	0	ID=cds-OAR21262.1;Parent=gene-A8144_07380;Dbxref=NCBI_GP:OAR21262.1;Name=OAR21262.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003874167.1;locus_tag=A8144_07380;product=cyclase;protein_id=OAR21262.1;transl_table=11
LYPH01000020.1	Genbank	gene	50377	50712	.	-	.	ID=gene-A8144_07385;Name=A8144_07385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07385
LYPH01000020.1	GeneMarkS+	CDS	50377	50712	.	-	0	ID=cds-OAR21263.1;Parent=gene-A8144_07385;Dbxref=NCBI_GP:OAR21263.1;Name=OAR21263.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07385;product=hypothetical protein;protein_id=OAR21263.1;transl_table=11
##sequence-region LYPH01000021.1 1 50529
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000021.1	Genbank	region	1	50529	.	+	.	ID=LYPH01000021.1:1..50529;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000021.1	Genbank	gene	263	1414	.	-	.	ID=gene-A8144_07390;Name=A8144_07390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07390
LYPH01000021.1	Protein Homology	CDS	263	1414	.	-	0	ID=cds-OAR21218.1;Parent=gene-A8144_07390;Dbxref=NCBI_GP:OAR21218.1;Name=OAR21218.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P53382.2;locus_tag=A8144_07390;product=sodium:proton antiporter;protein_id=OAR21218.1;transl_table=11
LYPH01000021.1	Genbank	gene	1631	1993	.	-	.	ID=gene-A8144_07395;Name=A8144_07395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07395
LYPH01000021.1	GeneMarkS+	CDS	1631	1993	.	-	0	ID=cds-OAR21190.1;Parent=gene-A8144_07395;Dbxref=NCBI_GP:OAR21190.1;Name=OAR21190.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07395;product=hypothetical protein;protein_id=OAR21190.1;transl_table=11
LYPH01000021.1	Genbank	gene	3012	3350	.	+	.	ID=gene-A8144_07400;Name=A8144_07400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07400
LYPH01000021.1	GeneMarkS+	CDS	3012	3350	.	+	0	ID=cds-OAR21191.1;Parent=gene-A8144_07400;Dbxref=NCBI_GP:OAR21191.1;Name=OAR21191.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07400;product=hypothetical protein;protein_id=OAR21191.1;transl_table=11
LYPH01000021.1	Genbank	gene	3347	3973	.	-	.	ID=gene-A8144_07405;Name=A8144_07405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07405
LYPH01000021.1	Protein Homology	CDS	3347	3973	.	-	0	ID=cds-OAR21219.1;Parent=gene-A8144_07405;Dbxref=NCBI_GP:OAR21219.1;Name=OAR21219.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012395781.1;locus_tag=A8144_07405;product=hypothetical protein;protein_id=OAR21219.1;transl_table=11
LYPH01000021.1	Genbank	gene	4833	6239	.	+	.	ID=gene-A8144_07410;Name=A8144_07410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07410
LYPH01000021.1	Protein Homology	CDS	4833	6239	.	+	0	ID=cds-OAR21220.1;Parent=gene-A8144_07410;Dbxref=NCBI_GP:OAR21220.1;Name=OAR21220.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908118.1;locus_tag=A8144_07410;product=ABC transporter substrate-binding protein;protein_id=OAR21220.1;transl_table=11
LYPH01000021.1	Genbank	gene	6268	7182	.	+	.	ID=gene-A8144_07415;Name=A8144_07415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07415
LYPH01000021.1	Protein Homology	CDS	6268	7182	.	+	0	ID=cds-OAR21192.1;Parent=gene-A8144_07415;Dbxref=NCBI_GP:OAR21192.1;Name=OAR21192.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908119.1;locus_tag=A8144_07415;product=ABC transporter permease;protein_id=OAR21192.1;transl_table=11
LYPH01000021.1	Genbank	gene	7172	8035	.	+	.	ID=gene-A8144_07420;Name=A8144_07420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07420
LYPH01000021.1	Protein Homology	CDS	7172	8035	.	+	0	ID=cds-OAR21221.1;Parent=gene-A8144_07420;Dbxref=NCBI_GP:OAR21221.1;Name=OAR21221.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908120.1;locus_tag=A8144_07420;product=sugar ABC transporter permease;protein_id=OAR21221.1;transl_table=11
LYPH01000021.1	Genbank	gene	8040	9218	.	+	.	ID=gene-A8144_07425;Name=A8144_07425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07425
LYPH01000021.1	Protein Homology	CDS	8040	9218	.	+	0	ID=cds-OAR21193.1;Parent=gene-A8144_07425;Dbxref=NCBI_GP:OAR21193.1;Name=OAR21193.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908121.1;locus_tag=A8144_07425;product=ABC transporter ATP-binding protein;protein_id=OAR21193.1;transl_table=11
LYPH01000021.1	Genbank	gene	9847	10956	.	-	.	ID=gene-A8144_07430;Name=A8144_07430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07430
LYPH01000021.1	Protein Homology	CDS	9847	10956	.	-	0	ID=cds-OAR21222.1;Parent=gene-A8144_07430;Dbxref=NCBI_GP:OAR21222.1;Name=OAR21222.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908122.1;locus_tag=A8144_07430;product=magnesium and cobalt transport protein CorA;protein_id=OAR21222.1;transl_table=11
LYPH01000021.1	Genbank	gene	11179	12168	.	+	.	ID=gene-A8144_07435;Name=A8144_07435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07435
LYPH01000021.1	Protein Homology	CDS	11179	12168	.	+	0	ID=cds-OAR21194.1;Parent=gene-A8144_07435;Dbxref=NCBI_GP:OAR21194.1;Name=OAR21194.1;Note=catalyzes the oxidation of malate to oxaloacetate;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014211984.1;locus_tag=A8144_07435;product=malate dehydrogenase;protein_id=OAR21194.1;transl_table=11
LYPH01000021.1	Genbank	gene	12165	12509	.	-	.	ID=gene-A8144_07440;Name=A8144_07440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07440
LYPH01000021.1	GeneMarkS+	CDS	12165	12509	.	-	0	ID=cds-OAR21195.1;Parent=gene-A8144_07440;Dbxref=NCBI_GP:OAR21195.1;Name=OAR21195.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07440;product=hypothetical protein;protein_id=OAR21195.1;transl_table=11
LYPH01000021.1	Genbank	pseudogene	13067	14240	.	+	.	ID=gene-A8144_07445;Name=A8144_07445;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07445;pseudo=true
LYPH01000021.1	Protein Homology	CDS	13067	14240	.	+	0	ID=cds-A8144_07445;Parent=gene-A8144_07445;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005629298.1;locus_tag=A8144_07445;product=malate dehydrogenase;pseudo=true;transl_table=11
LYPH01000021.1	Genbank	gene	14237	15094	.	+	.	ID=gene-A8144_07450;Name=A8144_07450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07450
LYPH01000021.1	Protein Homology	CDS	14237	15094	.	+	0	ID=cds-OAR21196.1;Parent=gene-A8144_07450;Dbxref=NCBI_GP:OAR21196.1;Name=OAR21196.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908124.1;locus_tag=A8144_07450;product=hypothetical protein;protein_id=OAR21196.1;transl_table=11
LYPH01000021.1	Genbank	gene	15640	16473	.	-	.	ID=gene-A8144_07455;Name=A8144_07455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07455
LYPH01000021.1	Protein Homology	CDS	15640	16473	.	-	0	ID=cds-OAR21197.1;Parent=gene-A8144_07455;Dbxref=NCBI_GP:OAR21197.1;Name=OAR21197.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908125.1;locus_tag=A8144_07455;product=acetoin dehydrogenase;protein_id=OAR21197.1;transl_table=11
LYPH01000021.1	Genbank	gene	16536	20252	.	-	.	ID=gene-A8144_07460;Name=kgd;gbkey=Gene;gene=kgd;gene_biotype=protein_coding;locus_tag=A8144_07460
LYPH01000021.1	Protein Homology	CDS	16536	20252	.	-	0	ID=cds-OAR21198.1;Parent=gene-A8144_07460;Dbxref=NCBI_GP:OAR21198.1;Name=OAR21198.1;Note=kgd%3B produces succinic semialdehyde%3B part of alternative pathway from alpha-ketoglutarate to succinate%3B essential for normal growth;gbkey=CDS;gene=kgd;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014941458.1;locus_tag=A8144_07460;product=alpha-ketoglutarate decarboxylase;protein_id=OAR21198.1;transl_table=11
LYPH01000021.1	Genbank	gene	20440	21114	.	-	.	ID=gene-A8144_07465;Name=A8144_07465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07465
LYPH01000021.1	Protein Homology	CDS	20440	21114	.	-	0	ID=cds-OAR21199.1;Parent=gene-A8144_07465;Dbxref=NCBI_GP:OAR21199.1;Name=OAR21199.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908127.1;locus_tag=A8144_07465;product=hypothetical protein;protein_id=OAR21199.1;transl_table=11
LYPH01000021.1	Genbank	gene	21449	21676	.	-	.	ID=gene-A8144_07470;Name=A8144_07470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07470
LYPH01000021.1	GeneMarkS+	CDS	21449	21676	.	-	0	ID=cds-OAR21200.1;Parent=gene-A8144_07470;Dbxref=NCBI_GP:OAR21200.1;Name=OAR21200.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07470;product=hypothetical protein;protein_id=OAR21200.1;transl_table=11
LYPH01000021.1	Genbank	gene	21918	22142	.	+	.	ID=gene-A8144_07475;Name=A8144_07475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07475
LYPH01000021.1	GeneMarkS+	CDS	21918	22142	.	+	0	ID=cds-OAR21201.1;Parent=gene-A8144_07475;Dbxref=NCBI_GP:OAR21201.1;Name=OAR21201.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07475;product=hypothetical protein;protein_id=OAR21201.1;transl_table=11
LYPH01000021.1	Genbank	gene	22169	22402	.	+	.	ID=gene-A8144_07480;Name=A8144_07480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07480
LYPH01000021.1	GeneMarkS+	CDS	22169	22402	.	+	0	ID=cds-OAR21202.1;Parent=gene-A8144_07480;Dbxref=NCBI_GP:OAR21202.1;Name=OAR21202.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07480;product=hypothetical protein;protein_id=OAR21202.1;transl_table=11
LYPH01000021.1	Genbank	gene	22390	22815	.	+	.	ID=gene-A8144_07485;Name=A8144_07485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07485
LYPH01000021.1	GeneMarkS+	CDS	22390	22815	.	+	0	ID=cds-OAR21203.1;Parent=gene-A8144_07485;Dbxref=NCBI_GP:OAR21203.1;Name=OAR21203.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07485;product=hypothetical protein;protein_id=OAR21203.1;transl_table=11
LYPH01000021.1	Genbank	gene	23156	26614	.	-	.	ID=gene-A8144_07490;Name=A8144_07490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07490
LYPH01000021.1	Protein Homology	CDS	23156	26614	.	-	0	ID=cds-OAR21204.1;Parent=gene-A8144_07490;Dbxref=NCBI_GP:OAR21204.1;Name=OAR21204.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908128.1;locus_tag=A8144_07490;product=nuclease;protein_id=OAR21204.1;transl_table=11
LYPH01000021.1	Genbank	gene	26665	27273	.	-	.	ID=gene-A8144_07495;Name=A8144_07495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07495
LYPH01000021.1	Protein Homology	CDS	26665	27273	.	-	0	ID=cds-OAR21205.1;Parent=gene-A8144_07495;Dbxref=NCBI_GP:OAR21205.1;Name=OAR21205.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CC94.1;locus_tag=A8144_07495;product=hypothetical protein;protein_id=OAR21205.1;transl_table=11
LYPH01000021.1	Genbank	pseudogene	27407	29143	.	+	.	ID=gene-A8144_07500;Name=A8144_07500;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07500;pseudo=true
LYPH01000021.1	Protein Homology	CDS	27407	29143	.	+	0	ID=cds-A8144_07500;Parent=gene-A8144_07500;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011724115.1;locus_tag=A8144_07500;product=cold-shock protein;pseudo=true;transl_table=11
LYPH01000021.1	Genbank	gene	29140	30279	.	+	.	ID=gene-A8144_07505;Name=A8144_07505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07505
LYPH01000021.1	Protein Homology	CDS	29140	30279	.	+	0	ID=cds-OAR21206.1;Parent=gene-A8144_07505;Dbxref=NCBI_GP:OAR21206.1;Name=OAR21206.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019735675.1;locus_tag=A8144_07505;product=acyltransferase;protein_id=OAR21206.1;transl_table=11
LYPH01000021.1	Genbank	gene	30398	30772	.	-	.	ID=gene-A8144_07510;Name=A8144_07510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07510
LYPH01000021.1	GeneMarkS+	CDS	30398	30772	.	-	0	ID=cds-OAR21207.1;Parent=gene-A8144_07510;Dbxref=NCBI_GP:OAR21207.1;Name=OAR21207.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07510;product=hypothetical protein;protein_id=OAR21207.1;transl_table=11
LYPH01000021.1	Genbank	gene	31389	31715	.	-	.	ID=gene-A8144_07515;Name=A8144_07515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07515
LYPH01000021.1	GeneMarkS+	CDS	31389	31715	.	-	0	ID=cds-OAR21208.1;Parent=gene-A8144_07515;Dbxref=NCBI_GP:OAR21208.1;Name=OAR21208.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07515;product=hypothetical protein;protein_id=OAR21208.1;transl_table=11
LYPH01000021.1	Genbank	pseudogene	31831	32955	.	-	.	ID=gene-A8144_07520;Name=A8144_07520;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07520;pseudo=true
LYPH01000021.1	Protein Homology	CDS	31831	32955	.	-	0	ID=cds-A8144_07520;Parent=gene-A8144_07520;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003878434.1;locus_tag=A8144_07520;product=cytochrome;pseudo=true;transl_table=11
LYPH01000021.1	Genbank	gene	32966	34285	.	-	.	ID=gene-A8144_07525;Name=A8144_07525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07525
LYPH01000021.1	Protein Homology	CDS	32966	34285	.	-	0	ID=cds-OAR21223.1;Parent=gene-A8144_07525;Dbxref=NCBI_GP:OAR21223.1;Name=OAR21223.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003885402.1;locus_tag=A8144_07525;product=FAD-linked oxidase;protein_id=OAR21223.1;transl_table=11
LYPH01000021.1	Genbank	pseudogene	34389	35479	.	-	.	ID=gene-A8144_07530;Name=A8144_07530;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07530;pseudo=true
LYPH01000021.1	Protein Homology	CDS	34389	35479	.	-	0	ID=cds-A8144_07530;Parent=gene-A8144_07530;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012395755.1;locus_tag=A8144_07530;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000021.1	Genbank	gene	35770	36459	.	+	.	ID=gene-A8144_07535;Name=A8144_07535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07535
LYPH01000021.1	Protein Homology	CDS	35770	36459	.	+	0	ID=cds-OAR21224.1;Parent=gene-A8144_07535;Dbxref=NCBI_GP:OAR21224.1;Name=OAR21224.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CC91.1;locus_tag=A8144_07535;product=hypothetical protein;protein_id=OAR21224.1;transl_table=11
LYPH01000021.1	Genbank	gene	36934	37275	.	+	.	ID=gene-A8144_07540;Name=A8144_07540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07540
LYPH01000021.1	Protein Homology	CDS	36934	37275	.	+	0	ID=cds-OAR21209.1;Parent=gene-A8144_07540;Dbxref=NCBI_GP:OAR21209.1;Name=OAR21209.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908133.1;locus_tag=A8144_07540;product=hypothetical protein;protein_id=OAR21209.1;transl_table=11
LYPH01000021.1	Genbank	pseudogene	37249	37682	.	-	.	ID=gene-A8144_07545;Name=A8144_07545;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07545;pseudo=true
LYPH01000021.1	Protein Homology	CDS	37249	37682	.	-	0	ID=cds-A8144_07545;Parent=gene-A8144_07545;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005629250.1;locus_tag=A8144_07545;product=HIT family hydrolase;pseudo=true;transl_table=11
LYPH01000021.1	Genbank	pseudogene	37704	38674	.	-	.	ID=gene-A8144_07550;Name=A8144_07550;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07550;pseudo=true
LYPH01000021.1	Protein Homology	CDS	37704	38674	.	-	0	ID=cds-A8144_07550;Parent=gene-A8144_07550;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003905225.1;locus_tag=A8144_07550;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000021.1	Genbank	pseudogene	38783	39972	.	+	.	ID=gene-A8144_07555;Name=A8144_07555;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07555;pseudo=true
LYPH01000021.1	Protein Homology	CDS	38783	39972	.	+	0	ID=cds-A8144_07555;Parent=gene-A8144_07555;Note=catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia%3B frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019730887.1;locus_tag=A8144_07555;product=amidase;pseudo=true;transl_table=11
LYPH01000021.1	Genbank	pseudogene	40071	40560	.	-	.	ID=gene-A8144_07560;Name=A8144_07560;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07560;pseudo=true
LYPH01000021.1	Protein Homology	CDS	40071	40560	.	-	0	ID=cds-A8144_07560;Parent=gene-A8144_07560;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010949629.1;locus_tag=A8144_07560;product=DNA-deoxyinosine glycosylase;pseudo=true;transl_table=11
LYPH01000021.1	Genbank	gene	42065	42280	.	+	.	ID=gene-A8144_07565;Name=A8144_07565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07565
LYPH01000021.1	GeneMarkS+	CDS	42065	42280	.	+	0	ID=cds-OAR21210.1;Parent=gene-A8144_07565;Dbxref=NCBI_GP:OAR21210.1;Name=OAR21210.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07565;product=hypothetical protein;protein_id=OAR21210.1;transl_table=11
LYPH01000021.1	Genbank	gene	42311	42619	.	+	.	ID=gene-A8144_07570;Name=A8144_07570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07570
LYPH01000021.1	GeneMarkS+	CDS	42311	42619	.	+	0	ID=cds-OAR21211.1;Parent=gene-A8144_07570;Dbxref=NCBI_GP:OAR21211.1;Name=OAR21211.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07570;product=hypothetical protein;protein_id=OAR21211.1;transl_table=11
LYPH01000021.1	Genbank	gene	43419	43622	.	+	.	ID=gene-A8144_07575;Name=A8144_07575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07575
LYPH01000021.1	GeneMarkS+	CDS	43419	43622	.	+	0	ID=cds-OAR21212.1;Parent=gene-A8144_07575;Dbxref=NCBI_GP:OAR21212.1;Name=OAR21212.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07575;product=hypothetical protein;protein_id=OAR21212.1;transl_table=11
LYPH01000021.1	Genbank	pseudogene	43640	43878	.	+	.	ID=gene-A8144_07580;Name=A8144_07580;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07580;pseudo=true
LYPH01000021.1	Protein Homology	CDS	43640	43878	.	+	0	ID=cds-A8144_07580;Parent=gene-A8144_07580;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003911468.1;locus_tag=A8144_07580;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000021.1	Genbank	gene	44245	46128	.	-	.	ID=gene-A8144_07585;Name=A8144_07585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07585
LYPH01000021.1	Protein Homology	CDS	44245	46128	.	-	0	ID=cds-OAR21213.1;Parent=gene-A8144_07585;Dbxref=NCBI_GP:OAR21213.1;Name=OAR21213.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003915915.1;locus_tag=A8144_07585;product=ABC transporter ATP-binding protein;protein_id=OAR21213.1;transl_table=11
LYPH01000021.1	Genbank	gene	46131	47885	.	-	.	ID=gene-A8144_07590;Name=A8144_07590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07590
LYPH01000021.1	Protein Homology	CDS	46131	47885	.	-	0	ID=cds-OAR21226.1;Parent=gene-A8144_07590;Dbxref=NCBI_GP:OAR21226.1;Name=OAR21226.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908135.1;locus_tag=A8144_07590;product=ABC transporter ATP-binding protein;protein_id=OAR21226.1;transl_table=11
LYPH01000021.1	Genbank	gene	47902	48081	.	+	.	ID=gene-A8144_07595;Name=A8144_07595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07595
LYPH01000021.1	GeneMarkS+	CDS	47902	48081	.	+	0	ID=cds-OAR21214.1;Parent=gene-A8144_07595;Dbxref=NCBI_GP:OAR21214.1;Name=OAR21214.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07595;product=hypothetical protein;protein_id=OAR21214.1;transl_table=11
LYPH01000021.1	Genbank	gene	48071	48637	.	+	.	ID=gene-A8144_07600;Name=A8144_07600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07600
LYPH01000021.1	Protein Homology	CDS	48071	48637	.	+	0	ID=cds-OAR21215.1;Parent=gene-A8144_07600;Dbxref=NCBI_GP:OAR21215.1;Name=OAR21215.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003875581.1;locus_tag=A8144_07600;product=hypothetical protein;protein_id=OAR21215.1;transl_table=11
LYPH01000021.1	Genbank	gene	48646	49209	.	+	.	ID=gene-A8144_07605;Name=A8144_07605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07605
LYPH01000021.1	Protein Homology	CDS	48646	49209	.	+	0	ID=cds-OAR21225.1;Parent=gene-A8144_07605;Dbxref=NCBI_GP:OAR21225.1;Name=OAR21225.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908137.1;locus_tag=A8144_07605;product=hypothetical protein;protein_id=OAR21225.1;transl_table=11
LYPH01000021.1	Genbank	gene	49217	49702	.	-	.	ID=gene-A8144_07610;Name=A8144_07610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07610
LYPH01000021.1	Protein Homology	CDS	49217	49702	.	-	0	ID=cds-OAR21227.1;Parent=gene-A8144_07610;Dbxref=NCBI_GP:OAR21227.1;Name=OAR21227.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CC85.1;locus_tag=A8144_07610;product=hypothetical protein;protein_id=OAR21227.1;transl_table=11
LYPH01000021.1	Genbank	gene	49862	50074	.	-	.	ID=gene-A8144_07615;Name=A8144_07615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07615
LYPH01000021.1	GeneMarkS+	CDS	49862	50074	.	-	0	ID=cds-OAR21216.1;Parent=gene-A8144_07615;Dbxref=NCBI_GP:OAR21216.1;Name=OAR21216.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07615;product=hypothetical protein;protein_id=OAR21216.1;transl_table=11
LYPH01000021.1	Genbank	gene	50129	50413	.	-	.	ID=gene-A8144_07620;Name=A8144_07620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07620
LYPH01000021.1	GeneMarkS+	CDS	50129	50413	.	-	0	ID=cds-OAR21217.1;Parent=gene-A8144_07620;Dbxref=NCBI_GP:OAR21217.1;Name=OAR21217.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07620;product=hypothetical protein;protein_id=OAR21217.1;transl_table=11
##sequence-region LYPH01000022.1 1 134504
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000022.1	Genbank	region	1	134504	.	+	.	ID=LYPH01000022.1:1..134504;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000022.1	Genbank	gene	1	3287	.	+	.	ID=gene-A8144_01125;Name=A8144_01125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01125;partial=true;start_range=.,1
LYPH01000022.1	Protein Homology	CDS	1	3287	.	+	2	ID=cds-OAR21099.1;Parent=gene-A8144_01125;Dbxref=NCBI_GP:OAR21099.1;Name=OAR21099.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908855.1;locus_tag=A8144_01125;partial=true;product=polyketide synthase;protein_id=OAR21099.1;start_range=.,1;transl_table=11
LYPH01000022.1	Genbank	gene	3284	9889	.	+	.	ID=gene-A8144_01130;Name=A8144_01130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01130
LYPH01000022.1	Protein Homology	CDS	3284	9889	.	+	0	ID=cds-OAR21100.1;Parent=gene-A8144_01130;Dbxref=NCBI_GP:OAR21100.1;Name=OAR21100.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908854.1;locus_tag=A8144_01130;product=polyketide synthase;protein_id=OAR21100.1;transl_table=11
LYPH01000022.1	Genbank	gene	9886	15354	.	+	.	ID=gene-A8144_01135;Name=A8144_01135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01135
LYPH01000022.1	Protein Homology	CDS	9886	15354	.	+	0	ID=cds-OAR21101.1;Parent=gene-A8144_01135;Dbxref=NCBI_GP:OAR21101.1;Name=OAR21101.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908853.1;locus_tag=A8144_01135;product=polyketide synthase;protein_id=OAR21101.1;transl_table=11
LYPH01000022.1	Genbank	gene	15361	19830	.	+	.	ID=gene-A8144_01140;Name=A8144_01140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01140
LYPH01000022.1	Protein Homology	CDS	15361	19830	.	+	0	ID=cds-OAR21102.1;Parent=gene-A8144_01140;Dbxref=NCBI_GP:OAR21102.1;Name=OAR21102.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908852.1;locus_tag=A8144_01140;product=polyketide synthase;protein_id=OAR21102.1;transl_table=11
LYPH01000022.1	Genbank	gene	19841	20836	.	+	.	ID=gene-A8144_01145;Name=A8144_01145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01145
LYPH01000022.1	Protein Homology	CDS	19841	20836	.	+	0	ID=cds-OAR21182.1;Parent=gene-A8144_01145;Dbxref=NCBI_GP:OAR21182.1;Name=OAR21182.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908851.1;locus_tag=A8144_01145;product=IclR family transcriptional regulator;protein_id=OAR21182.1;transl_table=11
LYPH01000022.1	Genbank	gene	20833	21699	.	+	.	ID=gene-A8144_01150;Name=A8144_01150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01150
LYPH01000022.1	Protein Homology	CDS	20833	21699	.	+	0	ID=cds-OAR21103.1;Parent=gene-A8144_01150;Dbxref=NCBI_GP:OAR21103.1;Name=OAR21103.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908850.1;locus_tag=A8144_01150;product=antibiotic ABC transporter permease;protein_id=OAR21103.1;transl_table=11
LYPH01000022.1	Genbank	gene	21696	22526	.	+	.	ID=gene-A8144_01155;Name=A8144_01155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01155
LYPH01000022.1	Protein Homology	CDS	21696	22526	.	+	0	ID=cds-OAR21104.1;Parent=gene-A8144_01155;Dbxref=NCBI_GP:OAR21104.1;Name=OAR21104.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908849.1;locus_tag=A8144_01155;product=peptide ABC transporter permease;protein_id=OAR21104.1;transl_table=11
LYPH01000022.1	Genbank	gene	22575	23846	.	+	.	ID=gene-A8144_01160;Name=A8144_01160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01160
LYPH01000022.1	Protein Homology	CDS	22575	23846	.	+	0	ID=cds-OAR21105.1;Parent=gene-A8144_01160;Dbxref=NCBI_GP:OAR21105.1;Name=OAR21105.1;Note=required for PDIM synthesis%3B phthiocerol and phthiodiolone dimycocerosate esters are scaffolds used for virulence-enhancing lipids%3B proposed to catalyze diesterification of phthiocerol and phthiodolone with mycocerosate%3B functions in polyketide synthesis;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49939.1;locus_tag=A8144_01160;product=acyltransferase;protein_id=OAR21105.1;transl_table=11
LYPH01000022.1	Genbank	gene	23992	25257	.	-	.	ID=gene-A8144_01165;Name=A8144_01165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01165
LYPH01000022.1	Protein Homology	CDS	23992	25257	.	-	0	ID=cds-OAR21106.1;Parent=gene-A8144_01165;Dbxref=NCBI_GP:OAR21106.1;Name=OAR21106.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49929.1;locus_tag=A8144_01165;product=glycosyltransferase;protein_id=OAR21106.1;transl_table=11
LYPH01000022.1	Genbank	gene	25448	26458	.	-	.	ID=gene-A8144_01170;Name=A8144_01170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01170
LYPH01000022.1	Protein Homology	CDS	25448	26458	.	-	0	ID=cds-OAR21107.1;Parent=gene-A8144_01170;Dbxref=NCBI_GP:OAR21107.1;Name=OAR21107.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908846.1;locus_tag=A8144_01170;product=hypothetical protein;protein_id=OAR21107.1;transl_table=11
LYPH01000022.1	Genbank	gene	26757	27662	.	+	.	ID=gene-A8144_01175;Name=A8144_01175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01175
LYPH01000022.1	Protein Homology	CDS	26757	27662	.	+	0	ID=cds-OAR21108.1;Parent=gene-A8144_01175;Dbxref=NCBI_GP:OAR21108.1;Name=OAR21108.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908845.1;locus_tag=A8144_01175;product=hypothetical protein;protein_id=OAR21108.1;transl_table=11
LYPH01000022.1	Genbank	gene	28024	28254	.	-	.	ID=gene-A8144_01180;Name=A8144_01180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01180
LYPH01000022.1	GeneMarkS+	CDS	28024	28254	.	-	0	ID=cds-OAR21109.1;Parent=gene-A8144_01180;Dbxref=NCBI_GP:OAR21109.1;Name=OAR21109.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01180;product=hypothetical protein;protein_id=OAR21109.1;transl_table=11
LYPH01000022.1	Genbank	gene	29432	29836	.	-	.	ID=gene-A8144_01185;Name=A8144_01185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01185
LYPH01000022.1	GeneMarkS+	CDS	29432	29836	.	-	0	ID=cds-OAR21110.1;Parent=gene-A8144_01185;Dbxref=NCBI_GP:OAR21110.1;Name=OAR21110.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01185;product=hypothetical protein;protein_id=OAR21110.1;transl_table=11
LYPH01000022.1	Genbank	gene	30860	31117	.	+	.	ID=gene-A8144_01190;Name=A8144_01190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01190
LYPH01000022.1	GeneMarkS+	CDS	30860	31117	.	+	0	ID=cds-OAR21111.1;Parent=gene-A8144_01190;Dbxref=NCBI_GP:OAR21111.1;Name=OAR21111.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01190;product=hypothetical protein;protein_id=OAR21111.1;transl_table=11
LYPH01000022.1	Genbank	gene	32120	32515	.	-	.	ID=gene-A8144_01195;Name=A8144_01195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01195
LYPH01000022.1	GeneMarkS+	CDS	32120	32515	.	-	0	ID=cds-OAR21112.1;Parent=gene-A8144_01195;Dbxref=NCBI_GP:OAR21112.1;Name=OAR21112.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01195;product=hypothetical protein;protein_id=OAR21112.1;transl_table=11
LYPH01000022.1	Genbank	gene	33062	35260	.	+	.	ID=gene-A8144_01200;Name=A8144_01200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01200
LYPH01000022.1	Protein Homology	CDS	33062	35260	.	+	0	ID=cds-OAR21113.1;Parent=gene-A8144_01200;Dbxref=NCBI_GP:OAR21113.1;Name=OAR21113.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908844.1;locus_tag=A8144_01200;product=hypothetical protein;protein_id=OAR21113.1;transl_table=11
LYPH01000022.1	Genbank	gene	36147	36407	.	-	.	ID=gene-A8144_01205;Name=A8144_01205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01205
LYPH01000022.1	GeneMarkS+	CDS	36147	36407	.	-	0	ID=cds-OAR21114.1;Parent=gene-A8144_01205;Dbxref=NCBI_GP:OAR21114.1;Name=OAR21114.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01205;product=hypothetical protein;protein_id=OAR21114.1;transl_table=11
LYPH01000022.1	Genbank	gene	36537	36731	.	-	.	ID=gene-A8144_01210;Name=A8144_01210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01210
LYPH01000022.1	GeneMarkS+	CDS	36537	36731	.	-	0	ID=cds-OAR21115.1;Parent=gene-A8144_01210;Dbxref=NCBI_GP:OAR21115.1;Name=OAR21115.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01210;product=hypothetical protein;protein_id=OAR21115.1;transl_table=11
LYPH01000022.1	Genbank	pseudogene	39918	40550	.	-	.	ID=gene-A8144_01215;Name=A8144_01215;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01215;pseudo=true
LYPH01000022.1	Protein Homology	CDS	39918	40550	.	-	0	ID=cds-A8144_01215;Parent=gene-A8144_01215;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010948824.1;locus_tag=A8144_01215;product=cutinase;pseudo=true;transl_table=11
LYPH01000022.1	Genbank	pseudogene	43397	43723	.	+	.	ID=gene-A8144_01220;Name=A8144_01220;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01220;pseudo=true
LYPH01000022.1	Protein Homology	CDS	43397	43723	.	+	0	ID=cds-A8144_01220;Parent=gene-A8144_01220;Note=internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003873375.1;locus_tag=A8144_01220;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000022.1	Genbank	pseudogene	43783	44484	.	+	.	ID=gene-A8144_01225;Name=A8144_01225;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01225;pseudo=true
LYPH01000022.1	Protein Homology	CDS	43783	44484	.	+	0	ID=cds-A8144_01225;Parent=gene-A8144_01225;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007772113.1;locus_tag=A8144_01225;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000022.1	Genbank	gene	44543	45295	.	-	.	ID=gene-A8144_01230;Name=A8144_01230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01230
LYPH01000022.1	Protein Homology	CDS	44543	45295	.	-	0	ID=cds-OAR21116.1;Parent=gene-A8144_01230;Dbxref=NCBI_GP:OAR21116.1;Name=OAR21116.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908843.1;locus_tag=A8144_01230;product=hypothetical protein;protein_id=OAR21116.1;transl_table=11
LYPH01000022.1	Genbank	gene	45399	45484	.	-	.	ID=gene-A8144_01235;Name=A8144_01235;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_01235
LYPH01000022.1	tRNAscan-SE	tRNA	45399	45484	.	-	.	ID=rna-A8144_01235;Parent=gene-A8144_01235;anticodon=(pos:complement(45448..45450));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_01235;product=tRNA-Ser
LYPH01000022.1	tRNAscan-SE	exon	45399	45484	.	-	.	ID=exon-A8144_01235-1;Parent=rna-A8144_01235;anticodon=(pos:complement(45448..45450));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_01235;product=tRNA-Ser
LYPH01000022.1	Genbank	gene	45617	45713	.	+	.	ID=gene-A8144_01240;Name=ffs;gbkey=Gene;gene=ffs;gene_biotype=SRP_RNA;locus_tag=A8144_01240
LYPH01000022.1	cmsearch	SRP_RNA	45617	45713	.	+	.	ID=rna-A8144_01240;Parent=gene-A8144_01240;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=A8144_01240;product=signal recognition particle sRNA small type
LYPH01000022.1	cmsearch	exon	45617	45713	.	+	.	ID=exon-A8144_01240-1;Parent=rna-A8144_01240;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=A8144_01240;product=signal recognition particle sRNA small type
LYPH01000022.1	Genbank	gene	45802	47085	.	+	.	ID=gene-A8144_01245;Name=A8144_01245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01245
LYPH01000022.1	Protein Homology	CDS	45802	47085	.	+	0	ID=cds-OAR21183.1;Parent=gene-A8144_01245;Dbxref=NCBI_GP:OAR21183.1;Name=OAR21183.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007772115.1;locus_tag=A8144_01245;product=aminotransferase;protein_id=OAR21183.1;transl_table=11
LYPH01000022.1	Genbank	gene	47195	49030	.	+	.	ID=gene-A8144_01250;Name=A8144_01250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01250
LYPH01000022.1	Protein Homology	CDS	47195	49030	.	+	0	ID=cds-OAR21117.1;Parent=gene-A8144_01250;Dbxref=NCBI_GP:OAR21117.1;Name=OAR21117.1;Note=catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand%3B the tau chain serves as a scaffold to help in the dimerizaton of the alpha%2Cepsilon and theta core complex%3B the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908841.1;locus_tag=A8144_01250;product=DNA polymerase III subunit gamma/tau;protein_id=OAR21117.1;transl_table=11
LYPH01000022.1	Genbank	gene	49027	50346	.	-	.	ID=gene-A8144_01255;Name=A8144_01255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01255
LYPH01000022.1	Protein Homology	CDS	49027	50346	.	-	0	ID=cds-OAR21118.1;Parent=gene-A8144_01255;Dbxref=NCBI_GP:OAR21118.1;Name=OAR21118.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003873371.1;locus_tag=A8144_01255;product=cyclopropane-fatty-acyl-phospholipid synthase;protein_id=OAR21118.1;transl_table=11
LYPH01000022.1	Genbank	gene	50343	51722	.	-	.	ID=gene-A8144_01260;Name=A8144_01260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01260
LYPH01000022.1	Protein Homology	CDS	50343	51722	.	-	0	ID=cds-OAR21119.1;Parent=gene-A8144_01260;Dbxref=NCBI_GP:OAR21119.1;Name=OAR21119.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009952025.1;locus_tag=A8144_01260;product=FAD-linked oxidase;protein_id=OAR21119.1;transl_table=11
LYPH01000022.1	Genbank	gene	51811	52248	.	+	.	ID=gene-A8144_01265;Name=A8144_01265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01265
LYPH01000022.1	Protein Homology	CDS	51811	52248	.	+	0	ID=cds-OAR21120.1;Parent=gene-A8144_01265;Dbxref=NCBI_GP:OAR21120.1;Name=OAR21120.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908838.1;locus_tag=A8144_01265;product=polyketide cyclase;protein_id=OAR21120.1;transl_table=11
LYPH01000022.1	Genbank	gene	52264	52998	.	-	.	ID=gene-A8144_01270;Name=A8144_01270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01270
LYPH01000022.1	Protein Homology	CDS	52264	52998	.	-	0	ID=cds-OAR21121.1;Parent=gene-A8144_01270;Dbxref=NCBI_GP:OAR21121.1;Name=OAR21121.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020730957.1;locus_tag=A8144_01270;product=N-acetylmuramoyl-L-alanine amidase;protein_id=OAR21121.1;transl_table=11
LYPH01000022.1	Genbank	gene	53134	53484	.	+	.	ID=gene-A8144_01275;Name=A8144_01275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01275
LYPH01000022.1	Protein Homology	CDS	53134	53484	.	+	0	ID=cds-OAR21122.1;Parent=gene-A8144_01275;Dbxref=NCBI_GP:OAR21122.1;Name=OAR21122.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O69519.1;locus_tag=A8144_01275;product=nucleoid-associated protein;protein_id=OAR21122.1;transl_table=11
LYPH01000022.1	Genbank	gene	53496	54107	.	+	.	ID=gene-A8144_01280;Name=A8144_01280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01280
LYPH01000022.1	Protein Homology	CDS	53496	54107	.	+	0	ID=cds-OAR21123.1;Parent=gene-A8144_01280;Dbxref=NCBI_GP:OAR21123.1;Name=OAR21123.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015357550.1;locus_tag=A8144_01280;product=recombination protein RecR;protein_id=OAR21123.1;transl_table=11
LYPH01000022.1	Genbank	pseudogene	54187	55064	.	+	.	ID=gene-A8144_01285;Name=A8144_01285;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01285;pseudo=true
LYPH01000022.1	Protein Homology	CDS	54187	55064	.	+	0	ID=cds-A8144_01285;Parent=gene-A8144_01285;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003912325.1;locus_tag=A8144_01285;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000022.1	Genbank	gene	55061	55768	.	-	.	ID=gene-A8144_01290;Name=A8144_01290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01290
LYPH01000022.1	Protein Homology	CDS	55061	55768	.	-	0	ID=cds-OAR21124.1;Parent=gene-A8144_01290;Dbxref=NCBI_GP:OAR21124.1;Name=OAR21124.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003873364.1;locus_tag=A8144_01290;product=glutamine amidotransferase;protein_id=OAR21124.1;transl_table=11
LYPH01000022.1	Genbank	gene	55761	56996	.	-	.	ID=gene-A8144_01295;Name=A8144_01295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01295
LYPH01000022.1	Protein Homology	CDS	55761	56996	.	-	0	ID=cds-OAR21125.1;Parent=gene-A8144_01295;Dbxref=NCBI_GP:OAR21125.1;Name=OAR21125.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908833.1;locus_tag=A8144_01295;product=UDP-N-acetylmuramyl peptide synthase;protein_id=OAR21125.1;transl_table=11
LYPH01000022.1	Genbank	pseudogene	57097	58092	.	+	.	ID=gene-A8144_01300;Name=A8144_01300;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01300;pseudo=true
LYPH01000022.1	Protein Homology	CDS	57097	58092	.	+	0	ID=cds-A8144_01300;Parent=gene-A8144_01300;Note=3'-5' exonuclease of DNA polymerase III%3B frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003921568.1;locus_tag=A8144_01300;product=DNA polymerase III subunit epsilon;pseudo=true;transl_table=11
LYPH01000022.1	Genbank	gene	58273	60075	.	-	.	ID=gene-A8144_01305;Name=A8144_01305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01305
LYPH01000022.1	Protein Homology	CDS	58273	60075	.	-	0	ID=cds-OAR21184.1;Parent=gene-A8144_01305;Dbxref=NCBI_GP:OAR21184.1;Name=OAR21184.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003873360.1;locus_tag=A8144_01305;product=2-isopropylmalate synthase;protein_id=OAR21184.1;transl_table=11
LYPH01000022.1	Genbank	gene	60792	62057	.	+	.	ID=gene-A8144_01310;Name=A8144_01310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01310
LYPH01000022.1	Protein Homology	CDS	60792	62057	.	+	0	ID=cds-OAR21126.1;Parent=gene-A8144_01310;Dbxref=NCBI_GP:OAR21126.1;Name=OAR21126.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_013472974.1;locus_tag=A8144_01310;product=aspartate kinase;protein_id=OAR21126.1;transl_table=11
LYPH01000022.1	Genbank	gene	62057	63112	.	+	.	ID=gene-A8144_01315;Name=A8144_01315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01315
LYPH01000022.1	Protein Homology	CDS	62057	63112	.	+	0	ID=cds-OAR21127.1;Parent=gene-A8144_01315;Dbxref=NCBI_GP:OAR21127.1;Name=OAR21127.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908830.1;locus_tag=A8144_01315;product=aspartate-semialdehyde dehydrogenase;protein_id=OAR21127.1;transl_table=11
LYPH01000022.1	Genbank	gene	63258	64268	.	+	.	ID=gene-A8144_01320;Name=A8144_01320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01320
LYPH01000022.1	Protein Homology	CDS	63258	64268	.	+	0	ID=cds-OAR21185.1;Parent=gene-A8144_01320;Dbxref=NCBI_GP:OAR21185.1;Name=OAR21185.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908829.1;locus_tag=A8144_01320;product=hypothetical protein;protein_id=OAR21185.1;transl_table=11
LYPH01000022.1	Genbank	gene	65341	65634	.	-	.	ID=gene-A8144_01325;Name=A8144_01325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01325
LYPH01000022.1	GeneMarkS+	CDS	65341	65634	.	-	0	ID=cds-OAR21128.1;Parent=gene-A8144_01325;Dbxref=NCBI_GP:OAR21128.1;Name=OAR21128.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01325;product=hypothetical protein;protein_id=OAR21128.1;transl_table=11
LYPH01000022.1	Genbank	gene	65989	66171	.	+	.	ID=gene-A8144_01330;Name=A8144_01330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01330
LYPH01000022.1	GeneMarkS+	CDS	65989	66171	.	+	0	ID=cds-OAR21129.1;Parent=gene-A8144_01330;Dbxref=NCBI_GP:OAR21129.1;Name=OAR21129.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01330;product=hypothetical protein;protein_id=OAR21129.1;transl_table=11
LYPH01000022.1	Genbank	gene	66937	67584	.	+	.	ID=gene-A8144_01335;Name=A8144_01335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01335
LYPH01000022.1	Protein Homology	CDS	66937	67584	.	+	0	ID=cds-OAR21186.1;Parent=gene-A8144_01335;Dbxref=NCBI_GP:OAR21186.1;Name=OAR21186.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908828.1;locus_tag=A8144_01335;product=hypothetical protein;protein_id=OAR21186.1;transl_table=11
LYPH01000022.1	Genbank	gene	67846	68142	.	+	.	ID=gene-A8144_01340;Name=A8144_01340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01340
LYPH01000022.1	GeneMarkS+	CDS	67846	68142	.	+	0	ID=cds-OAR21130.1;Parent=gene-A8144_01340;Dbxref=NCBI_GP:OAR21130.1;Name=OAR21130.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01340;product=hypothetical protein;protein_id=OAR21130.1;transl_table=11
LYPH01000022.1	Genbank	gene	68388	68600	.	+	.	ID=gene-A8144_01345;Name=A8144_01345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01345
LYPH01000022.1	GeneMarkS+	CDS	68388	68600	.	+	0	ID=cds-OAR21131.1;Parent=gene-A8144_01345;Dbxref=NCBI_GP:OAR21131.1;Name=OAR21131.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01345;product=hypothetical protein;protein_id=OAR21131.1;transl_table=11
LYPH01000022.1	Genbank	gene	68731	69039	.	+	.	ID=gene-A8144_01350;Name=A8144_01350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01350
LYPH01000022.1	GeneMarkS+	CDS	68731	69039	.	+	0	ID=cds-OAR21132.1;Parent=gene-A8144_01350;Dbxref=NCBI_GP:OAR21132.1;Name=OAR21132.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01350;product=hypothetical protein;protein_id=OAR21132.1;transl_table=11
LYPH01000022.1	Genbank	gene	69243	69491	.	+	.	ID=gene-A8144_01355;Name=A8144_01355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01355
LYPH01000022.1	GeneMarkS+	CDS	69243	69491	.	+	0	ID=cds-OAR21133.1;Parent=gene-A8144_01355;Dbxref=NCBI_GP:OAR21133.1;Name=OAR21133.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01355;product=hypothetical protein;protein_id=OAR21133.1;transl_table=11
LYPH01000022.1	Genbank	gene	70697	71065	.	-	.	ID=gene-A8144_01360;Name=A8144_01360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01360
LYPH01000022.1	GeneMarkS+	CDS	70697	71065	.	-	0	ID=cds-OAR21134.1;Parent=gene-A8144_01360;Dbxref=NCBI_GP:OAR21134.1;Name=OAR21134.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01360;product=hypothetical protein;protein_id=OAR21134.1;transl_table=11
LYPH01000022.1	Genbank	gene	71397	72923	.	+	.	ID=gene-A8144_01365;Name=A8144_01365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01365
LYPH01000022.1	Protein Homology	CDS	71397	72923	.	+	0	ID=cds-OAR21135.1;Parent=gene-A8144_01365;Dbxref=NCBI_GP:OAR21135.1;Name=OAR21135.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CB81.1;locus_tag=A8144_01365;product=glycerol kinase;protein_id=OAR21135.1;transl_table=11
LYPH01000022.1	Genbank	gene	73189	73791	.	-	.	ID=gene-A8144_01370;Name=A8144_01370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01370
LYPH01000022.1	Protein Homology	CDS	73189	73791	.	-	0	ID=cds-OAR21136.1;Parent=gene-A8144_01370;Dbxref=NCBI_GP:OAR21136.1;Name=OAR21136.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908826.1;locus_tag=A8144_01370;product=PadR family transcriptional regulator;protein_id=OAR21136.1;transl_table=11
LYPH01000022.1	Genbank	gene	74225	74815	.	-	.	ID=gene-A8144_01375;Name=A8144_01375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01375
LYPH01000022.1	Protein Homology	CDS	74225	74815	.	-	0	ID=cds-OAR21137.1;Parent=gene-A8144_01375;Dbxref=NCBI_GP:OAR21137.1;Name=OAR21137.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908825.1;locus_tag=A8144_01375;product=hypothetical protein;protein_id=OAR21137.1;transl_table=11
LYPH01000022.1	Genbank	gene	75013	75213	.	-	.	ID=gene-A8144_01380;Name=A8144_01380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01380
LYPH01000022.1	GeneMarkS+	CDS	75013	75213	.	-	0	ID=cds-OAR21138.1;Parent=gene-A8144_01380;Dbxref=NCBI_GP:OAR21138.1;Name=OAR21138.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01380;product=hypothetical protein;protein_id=OAR21138.1;transl_table=11
LYPH01000022.1	Genbank	gene	77866	77939	.	-	.	ID=gene-A8144_01385;Name=A8144_01385;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_01385
LYPH01000022.1	tRNAscan-SE	tRNA	77866	77939	.	-	.	ID=rna-A8144_01385;Parent=gene-A8144_01385;anticodon=(pos:complement(77903..77905));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_01385;product=tRNA-Pro
LYPH01000022.1	tRNAscan-SE	exon	77866	77939	.	-	.	ID=exon-A8144_01385-1;Parent=rna-A8144_01385;anticodon=(pos:complement(77903..77905));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_01385;product=tRNA-Pro
LYPH01000022.1	Genbank	gene	78957	79949	.	-	.	ID=gene-A8144_01390;Name=A8144_01390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01390
LYPH01000022.1	Protein Homology	CDS	78957	79949	.	-	0	ID=cds-OAR21139.1;Parent=gene-A8144_01390;Dbxref=NCBI_GP:OAR21139.1;Name=OAR21139.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908824.1;locus_tag=A8144_01390;product=metallophosphoesterase;protein_id=OAR21139.1;transl_table=11
LYPH01000022.1	Genbank	gene	80138	82549	.	-	.	ID=gene-A8144_01395;Name=A8144_01395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01395
LYPH01000022.1	Protein Homology	CDS	80138	82549	.	-	0	ID=cds-OAR21140.1;Parent=gene-A8144_01395;Dbxref=NCBI_GP:OAR21140.1;Name=OAR21140.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003873306.1;locus_tag=A8144_01395;product=penicillin-binding protein;protein_id=OAR21140.1;transl_table=11
LYPH01000022.1	Genbank	gene	82923	83273	.	+	.	ID=gene-A8144_01400;Name=A8144_01400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01400
LYPH01000022.1	Protein Homology	CDS	82923	83273	.	+	0	ID=cds-OAR21141.1;Parent=gene-A8144_01400;Dbxref=NCBI_GP:OAR21141.1;Name=OAR21141.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:B2HK79.1;locus_tag=A8144_01400;product=transcriptional regulator;protein_id=OAR21141.1;transl_table=11
LYPH01000022.1	Genbank	gene	83378	84523	.	-	.	ID=gene-A8144_01405;Name=A8144_01405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01405
LYPH01000022.1	Protein Homology	CDS	83378	84523	.	-	0	ID=cds-OAR21142.1;Parent=gene-A8144_01405;Dbxref=NCBI_GP:OAR21142.1;Name=OAR21142.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908821.1;locus_tag=A8144_01405;product=anion transporter;protein_id=OAR21142.1;transl_table=11
LYPH01000022.1	Genbank	gene	84520	85545	.	-	.	ID=gene-A8144_01410;Name=A8144_01410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01410
LYPH01000022.1	Protein Homology	CDS	84520	85545	.	-	0	ID=cds-OAR21143.1;Parent=gene-A8144_01410;Dbxref=NCBI_GP:OAR21143.1;Name=OAR21143.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014941181.1;locus_tag=A8144_01410;product=ATPase;protein_id=OAR21143.1;transl_table=11
LYPH01000022.1	Genbank	gene	85825	86280	.	+	.	ID=gene-A8144_01415;Name=A8144_01415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01415
LYPH01000022.1	Protein Homology	CDS	85825	86280	.	+	0	ID=cds-OAR21144.1;Parent=gene-A8144_01415;Dbxref=NCBI_GP:OAR21144.1;Name=OAR21144.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011741882.1;locus_tag=A8144_01415;product=LysR family transcriptional regulator;protein_id=OAR21144.1;transl_table=11
LYPH01000022.1	Genbank	gene	86286	87074	.	+	.	ID=gene-A8144_01420;Name=A8144_01420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01420
LYPH01000022.1	Protein Homology	CDS	86286	87074	.	+	0	ID=cds-OAR21145.1;Parent=gene-A8144_01420;Dbxref=NCBI_GP:OAR21145.1;Name=OAR21145.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908818.1;locus_tag=A8144_01420;product=MBL fold metallo-hydrolase;protein_id=OAR21145.1;transl_table=11
LYPH01000022.1	Genbank	gene	87152	87826	.	-	.	ID=gene-A8144_01425;Name=A8144_01425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01425
LYPH01000022.1	Protein Homology	CDS	87152	87826	.	-	0	ID=cds-OAR21146.1;Parent=gene-A8144_01425;Dbxref=NCBI_GP:OAR21146.1;Name=OAR21146.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003873299.1;locus_tag=A8144_01425;product=Crp/Fnr family transcriptional regulator;protein_id=OAR21146.1;transl_table=11
LYPH01000022.1	Genbank	gene	88252	89013	.	+	.	ID=gene-A8144_01430;Name=A8144_01430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01430
LYPH01000022.1	Protein Homology	CDS	88252	89013	.	+	0	ID=cds-OAR21147.1;Parent=gene-A8144_01430;Dbxref=NCBI_GP:OAR21147.1;Name=OAR21147.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908816.1;locus_tag=A8144_01430;product=endonuclease III;protein_id=OAR21147.1;transl_table=11
LYPH01000022.1	Genbank	gene	89064	89711	.	+	.	ID=gene-A8144_01435;Name=A8144_01435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01435
LYPH01000022.1	Protein Homology	CDS	89064	89711	.	+	0	ID=cds-OAR21148.1;Parent=gene-A8144_01435;Dbxref=NCBI_GP:OAR21148.1;Name=OAR21148.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908815.1;locus_tag=A8144_01435;product=hypothetical protein;protein_id=OAR21148.1;transl_table=11
LYPH01000022.1	Genbank	gene	89757	90557	.	+	.	ID=gene-A8144_01440;Name=A8144_01440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01440
LYPH01000022.1	Protein Homology	CDS	89757	90557	.	+	0	ID=cds-OAR21149.1;Parent=gene-A8144_01440;Dbxref=NCBI_GP:OAR21149.1;Name=OAR21149.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908814.1;locus_tag=A8144_01440;product=coenzyme A pyrophosphatase;protein_id=OAR21149.1;transl_table=11
LYPH01000022.1	Genbank	gene	90554	91759	.	+	.	ID=gene-A8144_01445;Name=A8144_01445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01445
LYPH01000022.1	Protein Homology	CDS	90554	91759	.	+	0	ID=cds-OAR21150.1;Parent=gene-A8144_01445;Dbxref=NCBI_GP:OAR21150.1;Name=OAR21150.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908813.1;locus_tag=A8144_01445;product=serine protease;protein_id=OAR21150.1;transl_table=11
LYPH01000022.1	Genbank	gene	91752	92726	.	-	.	ID=gene-A8144_01450;Name=A8144_01450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01450
LYPH01000022.1	Protein Homology	CDS	91752	92726	.	-	0	ID=cds-OAR21151.1;Parent=gene-A8144_01450;Dbxref=NCBI_GP:OAR21151.1;Name=OAR21151.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908812.1;locus_tag=A8144_01450;product=alpha/beta hydrolase;protein_id=OAR21151.1;transl_table=11
LYPH01000022.1	Genbank	gene	92727	93272	.	-	.	ID=gene-A8144_01455;Name=A8144_01455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01455
LYPH01000022.1	Protein Homology	CDS	92727	93272	.	-	0	ID=cds-OAR21152.1;Parent=gene-A8144_01455;Dbxref=NCBI_GP:OAR21152.1;Name=OAR21152.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908811.1;locus_tag=A8144_01455;product=hypothetical protein;protein_id=OAR21152.1;transl_table=11
LYPH01000022.1	Genbank	gene	93509	94180	.	+	.	ID=gene-A8144_01460;Name=A8144_01460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01460
LYPH01000022.1	Protein Homology	CDS	93509	94180	.	+	0	ID=cds-OAR21153.1;Parent=gene-A8144_01460;Dbxref=NCBI_GP:OAR21153.1;Name=OAR21153.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003877062.1;locus_tag=A8144_01460;product=peptidase;protein_id=OAR21153.1;transl_table=11
LYPH01000022.1	Genbank	gene	94187	94438	.	-	.	ID=gene-A8144_01465;Name=A8144_01465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01465
LYPH01000022.1	GeneMarkS+	CDS	94187	94438	.	-	0	ID=cds-OAR21154.1;Parent=gene-A8144_01465;Dbxref=NCBI_GP:OAR21154.1;Name=OAR21154.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01465;product=hypothetical protein;protein_id=OAR21154.1;transl_table=11
LYPH01000022.1	Genbank	gene	94677	94895	.	+	.	ID=gene-A8144_01470;Name=A8144_01470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01470
LYPH01000022.1	GeneMarkS+	CDS	94677	94895	.	+	0	ID=cds-OAR21155.1;Parent=gene-A8144_01470;Dbxref=NCBI_GP:OAR21155.1;Name=OAR21155.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01470;product=hypothetical protein;protein_id=OAR21155.1;transl_table=11
LYPH01000022.1	Genbank	gene	95277	95510	.	-	.	ID=gene-A8144_01475;Name=A8144_01475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01475
LYPH01000022.1	GeneMarkS+	CDS	95277	95510	.	-	0	ID=cds-OAR21156.1;Parent=gene-A8144_01475;Dbxref=NCBI_GP:OAR21156.1;Name=OAR21156.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01475;product=hypothetical protein;protein_id=OAR21156.1;transl_table=11
LYPH01000022.1	Genbank	gene	95542	95787	.	+	.	ID=gene-A8144_01480;Name=A8144_01480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01480
LYPH01000022.1	GeneMarkS+	CDS	95542	95787	.	+	0	ID=cds-OAR21157.1;Parent=gene-A8144_01480;Dbxref=NCBI_GP:OAR21157.1;Name=OAR21157.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01480;product=hypothetical protein;protein_id=OAR21157.1;transl_table=11
LYPH01000022.1	Genbank	gene	96846	97115	.	+	.	ID=gene-A8144_01485;Name=A8144_01485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01485
LYPH01000022.1	GeneMarkS+	CDS	96846	97115	.	+	0	ID=cds-OAR21158.1;Parent=gene-A8144_01485;Dbxref=NCBI_GP:OAR21158.1;Name=OAR21158.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01485;product=hypothetical protein;protein_id=OAR21158.1;transl_table=11
LYPH01000022.1	Genbank	gene	97186	97767	.	+	.	ID=gene-A8144_01490;Name=A8144_01490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01490
LYPH01000022.1	GeneMarkS+	CDS	97186	97767	.	+	0	ID=cds-OAR21159.1;Parent=gene-A8144_01490;Dbxref=NCBI_GP:OAR21159.1;Name=OAR21159.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01490;product=hypothetical protein;protein_id=OAR21159.1;transl_table=11
LYPH01000022.1	Genbank	pseudogene	98017	98869	.	+	.	ID=gene-A8144_01495;Name=A8144_01495;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01495;pseudo=true
LYPH01000022.1	Protein Homology	CDS	98017	98869	.	+	0	ID=cds-A8144_01495;Parent=gene-A8144_01495;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007166616.1;locus_tag=A8144_01495;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000022.1	Genbank	pseudogene	98897	100483	.	+	.	ID=gene-A8144_01500;Name=A8144_01500;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01500;pseudo=true
LYPH01000022.1	Protein Homology	CDS	98897	100483	.	+	0	ID=cds-A8144_01500;Parent=gene-A8144_01500;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012396668.1;locus_tag=A8144_01500;product=ABC transporter ATP-binding protein;pseudo=true;transl_table=11
LYPH01000022.1	Genbank	gene	100558	101328	.	+	.	ID=gene-A8144_01505;Name=A8144_01505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01505
LYPH01000022.1	Protein Homology	CDS	100558	101328	.	+	0	ID=cds-OAR21160.1;Parent=gene-A8144_01505;Dbxref=NCBI_GP:OAR21160.1;Name=OAR21160.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007772251.1;locus_tag=A8144_01505;product=oxidoreductase;protein_id=OAR21160.1;transl_table=11
LYPH01000022.1	Genbank	gene	102076	102300	.	+	.	ID=gene-A8144_01510;Name=A8144_01510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01510
LYPH01000022.1	Protein Homology	CDS	102076	102300	.	+	0	ID=cds-OAR21161.1;Parent=gene-A8144_01510;Dbxref=NCBI_GP:OAR21161.1;Name=OAR21161.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908808.1;locus_tag=A8144_01510;product=hypothetical protein;protein_id=OAR21161.1;transl_table=11
LYPH01000022.1	Genbank	pseudogene	102471	103631	.	+	.	ID=gene-A8144_01515;Name=A8144_01515;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01515;pseudo=true
LYPH01000022.1	Protein Homology	CDS	102471	103631	.	+	0	ID=cds-A8144_01515;Parent=gene-A8144_01515;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003403010.1;locus_tag=A8144_01515;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000022.1	Genbank	pseudogene	104803	105361	.	+	.	ID=gene-A8144_01520;Name=A8144_01520;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01520;pseudo=true
LYPH01000022.1	Protein Homology	CDS	104803	105361	.	+	0	ID=cds-A8144_01520;Parent=gene-A8144_01520;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011891374.1;locus_tag=A8144_01520;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000022.1	Genbank	gene	105939	106298	.	-	.	ID=gene-A8144_01525;Name=A8144_01525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01525
LYPH01000022.1	Protein Homology	CDS	105939	106298	.	-	0	ID=cds-OAR21162.1;Parent=gene-A8144_01525;Dbxref=NCBI_GP:OAR21162.1;Name=OAR21162.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908807.1;locus_tag=A8144_01525;product=hypothetical protein;protein_id=OAR21162.1;transl_table=11
LYPH01000022.1	Genbank	gene	106690	107004	.	-	.	ID=gene-A8144_01530;Name=A8144_01530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01530
LYPH01000022.1	Protein Homology	CDS	106690	107004	.	-	0	ID=cds-OAR21163.1;Parent=gene-A8144_01530;Dbxref=NCBI_GP:OAR21163.1;Name=OAR21163.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908806.1;locus_tag=A8144_01530;product=hypothetical protein;protein_id=OAR21163.1;transl_table=11
LYPH01000022.1	Genbank	gene	107268	107351	.	-	.	ID=gene-A8144_01535;Name=A8144_01535;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_01535
LYPH01000022.1	tRNAscan-SE	tRNA	107268	107351	.	-	.	ID=rna-A8144_01535;Parent=gene-A8144_01535;anticodon=(pos:complement(107315..107317));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_01535;product=tRNA-Tyr
LYPH01000022.1	tRNAscan-SE	exon	107268	107351	.	-	.	ID=exon-A8144_01535-1;Parent=rna-A8144_01535;anticodon=(pos:complement(107315..107317));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_01535;product=tRNA-Tyr
LYPH01000022.1	Genbank	pseudogene	107421	107908	.	+	.	ID=gene-A8144_01540;Name=A8144_01540;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01540;pseudo=true
LYPH01000022.1	Protein Homology	CDS	107421	107908	.	+	0	ID=cds-A8144_01540;Parent=gene-A8144_01540;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014585502.1;locus_tag=A8144_01540;product=YajQ family cyclic di-GMP-binding protein;pseudo=true;transl_table=11
LYPH01000022.1	Genbank	pseudogene	107945	109183	.	+	.	ID=gene-A8144_01545;Name=A8144_01545;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01545;pseudo=true
LYPH01000022.1	Protein Homology	CDS	107945	109183	.	+	0	ID=cds-A8144_01545;Parent=gene-A8144_01545;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015292262.1;locus_tag=A8144_01545;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000022.1	Genbank	gene	109200	109451	.	-	.	ID=gene-A8144_01550;Name=A8144_01550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01550
LYPH01000022.1	GeneMarkS+	CDS	109200	109451	.	-	0	ID=cds-OAR21164.1;Parent=gene-A8144_01550;Dbxref=NCBI_GP:OAR21164.1;Name=OAR21164.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01550;product=hypothetical protein;protein_id=OAR21164.1;transl_table=11
LYPH01000022.1	Genbank	gene	110588	112078	.	+	.	ID=gene-A8144_01555;Name=A8144_01555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01555
LYPH01000022.1	Protein Homology	CDS	110588	112078	.	+	0	ID=cds-OAR21165.1;Parent=gene-A8144_01555;Dbxref=NCBI_GP:OAR21165.1;Name=OAR21165.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908805.1;locus_tag=A8144_01555;product=transporter;protein_id=OAR21165.1;transl_table=11
LYPH01000022.1	Genbank	gene	112606	113469	.	-	.	ID=gene-A8144_01560;Name=A8144_01560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01560
LYPH01000022.1	Protein Homology	CDS	112606	113469	.	-	0	ID=cds-OAR21166.1;Parent=gene-A8144_01560;Dbxref=NCBI_GP:OAR21166.1;Name=OAR21166.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008261012.1;locus_tag=A8144_01560;product=zinc metalloprotease HtpX;protein_id=OAR21166.1;transl_table=11
LYPH01000022.1	Genbank	gene	113580	114587	.	-	.	ID=gene-A8144_01565;Name=A8144_01565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01565
LYPH01000022.1	Protein Homology	CDS	113580	114587	.	-	0	ID=cds-OAR21167.1;Parent=gene-A8144_01565;Dbxref=NCBI_GP:OAR21167.1;Name=OAR21167.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003883613.1;locus_tag=A8144_01565;product=geranylgeranyl pyrophosphate synthase;protein_id=OAR21167.1;transl_table=11
LYPH01000022.1	Genbank	gene	114603	115829	.	+	.	ID=gene-A8144_01570;Name=A8144_01570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01570
LYPH01000022.1	Protein Homology	CDS	114603	115829	.	+	0	ID=cds-OAR21168.1;Parent=gene-A8144_01570;Dbxref=NCBI_GP:OAR21168.1;Name=OAR21168.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908802.1;locus_tag=A8144_01570;product=FAD-linked oxidoreductase;protein_id=OAR21168.1;transl_table=11
LYPH01000022.1	Genbank	gene	116381	116719	.	+	.	ID=gene-A8144_01575;Name=A8144_01575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01575
LYPH01000022.1	Protein Homology	CDS	116381	116719	.	+	0	ID=cds-OAR21169.1;Parent=gene-A8144_01575;Dbxref=NCBI_GP:OAR21169.1;Name=OAR21169.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908801.1;locus_tag=A8144_01575;product=hypothetical protein;protein_id=OAR21169.1;transl_table=11
LYPH01000022.1	Genbank	gene	116737	117429	.	-	.	ID=gene-A8144_01580;Name=A8144_01580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01580
LYPH01000022.1	Protein Homology	CDS	116737	117429	.	-	0	ID=cds-OAR21170.1;Parent=gene-A8144_01580;Dbxref=NCBI_GP:OAR21170.1;Name=OAR21170.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007167721.1;locus_tag=A8144_01580;product=bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1%2C4-benzoquinol methylase;protein_id=OAR21170.1;transl_table=11
LYPH01000022.1	Genbank	pseudogene	117559	118552	.	-	.	ID=gene-A8144_01585;Name=A8144_01585;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01585;pseudo=true
LYPH01000022.1	Protein Homology	CDS	117559	118552	.	-	0	ID=cds-A8144_01585;Parent=gene-A8144_01585;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011854588.1;locus_tag=A8144_01585;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000022.1	Genbank	gene	118706	119233	.	-	.	ID=gene-A8144_01590;Name=A8144_01590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01590
LYPH01000022.1	Protein Homology	CDS	118706	119233	.	-	0	ID=cds-OAR21171.1;Parent=gene-A8144_01590;Dbxref=NCBI_GP:OAR21171.1;Name=OAR21171.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908799.1;locus_tag=A8144_01590;product=hypothetical protein;protein_id=OAR21171.1;transl_table=11
LYPH01000022.1	Genbank	gene	119261	120931	.	-	.	ID=gene-A8144_01595;Name=A8144_01595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01595
LYPH01000022.1	Protein Homology	CDS	119261	120931	.	-	0	ID=cds-OAR21172.1;Parent=gene-A8144_01595;Dbxref=NCBI_GP:OAR21172.1;Name=OAR21172.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBB0.1;locus_tag=A8144_01595;product=2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase;protein_id=OAR21172.1;transl_table=11
LYPH01000022.1	Genbank	gene	121175	121972	.	-	.	ID=gene-A8144_01600;Name=A8144_01600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01600
LYPH01000022.1	Protein Homology	CDS	121175	121972	.	-	0	ID=cds-OAR21187.1;Parent=gene-A8144_01600;Dbxref=NCBI_GP:OAR21187.1;Name=OAR21187.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908797.1;locus_tag=A8144_01600;product=bromoperoxidase;protein_id=OAR21187.1;transl_table=11
LYPH01000022.1	Genbank	gene	121935	122939	.	-	.	ID=gene-A8144_01605;Name=A8144_01605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01605
LYPH01000022.1	Protein Homology	CDS	121935	122939	.	-	0	ID=cds-OAR21173.1;Parent=gene-A8144_01605;Dbxref=NCBI_GP:OAR21173.1;Name=OAR21173.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBB2.1;locus_tag=A8144_01605;product=O-succinylbenzoate synthase;protein_id=OAR21173.1;transl_table=11
LYPH01000022.1	Genbank	pseudogene	122936	124565	.	-	.	ID=gene-A8144_01610;Name=A8144_01610;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01610;pseudo=true
LYPH01000022.1	Protein Homology	CDS	122936	124565	.	-	0	ID=cds-A8144_01610;Parent=gene-A8144_01610;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015632736.1;locus_tag=A8144_01610;product=amidohydrolase;pseudo=true;transl_table=11
LYPH01000022.1	Genbank	pseudogene	124652	126167	.	+	.	ID=gene-A8144_01615;Name=A8144_01615;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01615;pseudo=true
LYPH01000022.1	Protein Homology	CDS	124652	126167	.	+	0	ID=cds-A8144_01615;Parent=gene-A8144_01615;Note=activates fatty acids by binding to coenzyme A%3B frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003919621.1;locus_tag=A8144_01615;product=acyl-CoA synthetase;pseudo=true;transl_table=11
LYPH01000022.1	Genbank	gene	126453	126674	.	+	.	ID=gene-A8144_01620;Name=A8144_01620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01620
LYPH01000022.1	Protein Homology	CDS	126453	126674	.	+	0	ID=cds-OAR21174.1;Parent=gene-A8144_01620;Dbxref=NCBI_GP:OAR21174.1;Name=OAR21174.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908795.1;locus_tag=A8144_01620;product=hypothetical protein;protein_id=OAR21174.1;transl_table=11
LYPH01000022.1	Genbank	gene	126667	127278	.	+	.	ID=gene-A8144_01625;Name=A8144_01625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01625
LYPH01000022.1	Protein Homology	CDS	126667	127278	.	+	0	ID=cds-OAR21175.1;Parent=gene-A8144_01625;Dbxref=NCBI_GP:OAR21175.1;Name=OAR21175.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908794.1;locus_tag=A8144_01625;product=hypothetical protein;protein_id=OAR21175.1;transl_table=11
LYPH01000022.1	Genbank	gene	127275	128177	.	+	.	ID=gene-A8144_01630;Name=A8144_01630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01630
LYPH01000022.1	Protein Homology	CDS	127275	128177	.	+	0	ID=cds-OAR21176.1;Parent=gene-A8144_01630;Dbxref=NCBI_GP:OAR21176.1;Name=OAR21176.1;Note=catalyzes the formation of 1%2C4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020727493.1;locus_tag=A8144_01630;product=1%2C4-dihydroxy-2-naphthoyl-CoA synthase;protein_id=OAR21176.1;transl_table=11
LYPH01000022.1	Genbank	gene	128333	128653	.	+	.	ID=gene-A8144_01635;Name=A8144_01635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01635
LYPH01000022.1	GeneMarkS+	CDS	128333	128653	.	+	0	ID=cds-OAR21177.1;Parent=gene-A8144_01635;Dbxref=NCBI_GP:OAR21177.1;Name=OAR21177.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01635;product=hypothetical protein;protein_id=OAR21177.1;transl_table=11
LYPH01000022.1	Genbank	gene	129831	130247	.	+	.	ID=gene-A8144_01640;Name=A8144_01640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01640
LYPH01000022.1	Protein Homology	CDS	129831	130247	.	+	0	ID=cds-OAR21188.1;Parent=gene-A8144_01640;Dbxref=NCBI_GP:OAR21188.1;Name=OAR21188.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908792.1;locus_tag=A8144_01640;product=glyoxalase;protein_id=OAR21188.1;transl_table=11
LYPH01000022.1	Genbank	gene	130345	131589	.	+	.	ID=gene-A8144_01645;Name=A8144_01645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01645
LYPH01000022.1	Protein Homology	CDS	130345	131589	.	+	0	ID=cds-OAR21178.1;Parent=gene-A8144_01645;Dbxref=NCBI_GP:OAR21178.1;Name=OAR21178.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q50173.1;locus_tag=A8144_01645;product=inorganic phosphate transporter;protein_id=OAR21178.1;transl_table=11
LYPH01000022.1	Genbank	gene	131586	131876	.	+	.	ID=gene-A8144_01650;Name=A8144_01650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01650
LYPH01000022.1	Protein Homology	CDS	131586	131876	.	+	0	ID=cds-OAR21179.1;Parent=gene-A8144_01650;Dbxref=NCBI_GP:OAR21179.1;Name=OAR21179.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908790.1;locus_tag=A8144_01650;product=hypothetical protein;protein_id=OAR21179.1;transl_table=11
LYPH01000022.1	Genbank	gene	131906	132208	.	+	.	ID=gene-A8144_01655;Name=A8144_01655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01655
LYPH01000022.1	Protein Homology	CDS	131906	132208	.	+	0	ID=cds-OAR21180.1;Parent=gene-A8144_01655;Dbxref=NCBI_GP:OAR21180.1;Name=OAR21180.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908789.1;locus_tag=A8144_01655;product=hypothetical protein;protein_id=OAR21180.1;transl_table=11
LYPH01000022.1	Genbank	gene	132301	133359	.	+	.	ID=gene-A8144_01660;Name=A8144_01660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01660
LYPH01000022.1	Protein Homology	CDS	132301	133359	.	+	0	ID=cds-OAR21189.1;Parent=gene-A8144_01660;Dbxref=NCBI_GP:OAR21189.1;Name=OAR21189.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015626726.1;locus_tag=A8144_01660;product=O-succinylbenzoic acid--CoA ligase;protein_id=OAR21189.1;transl_table=11
LYPH01000022.1	Genbank	gene	133676	133975	.	-	.	ID=gene-A8144_01665;Name=A8144_01665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01665
LYPH01000022.1	GeneMarkS+	CDS	133676	133975	.	-	0	ID=cds-OAR21181.1;Parent=gene-A8144_01665;Dbxref=NCBI_GP:OAR21181.1;Name=OAR21181.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01665;product=hypothetical protein;protein_id=OAR21181.1;transl_table=11
##sequence-region LYPH01000023.1 1 48353
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000023.1	Genbank	region	1	48353	.	+	.	ID=LYPH01000023.1:1..48353;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000023.1	Genbank	gene	59	1168	.	-	.	ID=gene-A8144_07625;Name=A8144_07625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07625
LYPH01000023.1	Protein Homology	CDS	59	1168	.	-	0	ID=cds-OAR21075.1;Parent=gene-A8144_07625;Dbxref=NCBI_GP:OAR21075.1;Name=OAR21075.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q57240.1;locus_tag=A8144_07625;product=inositol 1-phosphate synthase;protein_id=OAR21075.1;transl_table=11
LYPH01000023.1	Genbank	gene	1249	1791	.	-	.	ID=gene-A8144_07630;Name=A8144_07630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07630
LYPH01000023.1	Protein Homology	CDS	1249	1791	.	-	0	ID=cds-OAR21076.1;Parent=gene-A8144_07630;Dbxref=NCBI_GP:OAR21076.1;Name=OAR21076.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008262664.1;locus_tag=A8144_07630;product=PadR family transcriptional regulator;protein_id=OAR21076.1;transl_table=11
LYPH01000023.1	Genbank	gene	2972	3406	.	+	.	ID=gene-A8144_07635;Name=A8144_07635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07635
LYPH01000023.1	Protein Homology	CDS	2972	3406	.	+	0	ID=cds-OAR21077.1;Parent=gene-A8144_07635;Dbxref=NCBI_GP:OAR21077.1;Name=OAR21077.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014818433.1;locus_tag=A8144_07635;product=hypothetical protein;protein_id=OAR21077.1;transl_table=11
LYPH01000023.1	Genbank	gene	3804	5930	.	+	.	ID=gene-A8144_07640;Name=A8144_07640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07640
LYPH01000023.1	Protein Homology	CDS	3804	5930	.	+	0	ID=cds-OAR21097.1;Parent=gene-A8144_07640;Dbxref=NCBI_GP:OAR21097.1;Name=OAR21097.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010909034.1;locus_tag=A8144_07640;product=penicillin-binding protein;protein_id=OAR21097.1;transl_table=11
LYPH01000023.1	Genbank	gene	5927	7621	.	+	.	ID=gene-A8144_07645;Name=A8144_07645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07645
LYPH01000023.1	Protein Homology	CDS	5927	7621	.	+	0	ID=cds-OAR21078.1;Parent=gene-A8144_07645;Dbxref=NCBI_GP:OAR21078.1;Name=OAR21078.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010909033.1;locus_tag=A8144_07645;product=hypothetical protein;protein_id=OAR21078.1;transl_table=11
LYPH01000023.1	Genbank	gene	7925	8161	.	+	.	ID=gene-A8144_07650;Name=A8144_07650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07650
LYPH01000023.1	GeneMarkS+	CDS	7925	8161	.	+	0	ID=cds-OAR21079.1;Parent=gene-A8144_07650;Dbxref=NCBI_GP:OAR21079.1;Name=OAR21079.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07650;product=hypothetical protein;protein_id=OAR21079.1;transl_table=11
LYPH01000023.1	Genbank	gene	8169	8459	.	+	.	ID=gene-A8144_07655;Name=A8144_07655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07655
LYPH01000023.1	Protein Homology	CDS	8169	8459	.	+	0	ID=cds-OAR21080.1;Parent=gene-A8144_07655;Dbxref=NCBI_GP:OAR21080.1;Name=OAR21080.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020099843.1;locus_tag=A8144_07655;product=30S ribosomal protein S6;protein_id=OAR21080.1;transl_table=11
LYPH01000023.1	Genbank	gene	8619	9125	.	+	.	ID=gene-A8144_07660;Name=A8144_07660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07660
LYPH01000023.1	Protein Homology	CDS	8619	9125	.	+	0	ID=cds-OAR21081.1;Parent=gene-A8144_07660;Dbxref=NCBI_GP:OAR21081.1;Name=OAR21081.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014710765.1;locus_tag=A8144_07660;product=single-stranded DNA-binding protein;protein_id=OAR21081.1;transl_table=11
LYPH01000023.1	Genbank	gene	9151	9405	.	+	.	ID=gene-A8144_07665;Name=A8144_07665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07665
LYPH01000023.1	Protein Homology	CDS	9151	9405	.	+	0	ID=cds-OAR21082.1;Parent=gene-A8144_07665;Dbxref=NCBI_GP:OAR21082.1;Name=OAR21082.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010909030.1;locus_tag=A8144_07665;product=30S ribosomal protein S18;protein_id=OAR21082.1;transl_table=11
LYPH01000023.1	Genbank	gene	9453	9911	.	+	.	ID=gene-A8144_07670;Name=A8144_07670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07670
LYPH01000023.1	Protein Homology	CDS	9453	9911	.	+	0	ID=cds-OAR21083.1;Parent=gene-A8144_07670;Dbxref=NCBI_GP:OAR21083.1;Name=OAR21083.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46385.1;locus_tag=A8144_07670;product=50S ribosomal protein L9;protein_id=OAR21083.1;transl_table=11
LYPH01000023.1	Genbank	gene	10461	12275	.	+	.	ID=gene-A8144_07675;Name=A8144_07675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07675
LYPH01000023.1	Protein Homology	CDS	10461	12275	.	+	0	ID=cds-OAR21084.1;Parent=gene-A8144_07675;Dbxref=NCBI_GP:OAR21084.1;Name=OAR21084.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46394.2;locus_tag=A8144_07675;product=replicative DNA helicase;protein_id=OAR21084.1;transl_table=11
LYPH01000023.1	Genbank	gene	13463	14032	.	-	.	ID=gene-A8144_07680;Name=A8144_07680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07680
LYPH01000023.1	GeneMarkS+	CDS	13463	14032	.	-	0	ID=cds-OAR21085.1;Parent=gene-A8144_07680;Dbxref=NCBI_GP:OAR21085.1;Name=OAR21085.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07680;product=hypothetical protein;protein_id=OAR21085.1;transl_table=11
LYPH01000023.1	Genbank	gene	14507	17161	.	-	.	ID=gene-A8144_07685;Name=A8144_07685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07685
LYPH01000023.1	Protein Homology	CDS	14507	17161	.	-	0	ID=cds-OAR21086.1;Parent=gene-A8144_07685;Dbxref=NCBI_GP:OAR21086.1;Name=OAR21086.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015355848.1;locus_tag=A8144_07685;product=hypothetical protein;protein_id=OAR21086.1;transl_table=11
LYPH01000023.1	Genbank	gene	17185	20187	.	-	.	ID=gene-A8144_07690;Name=A8144_07690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07690
LYPH01000023.1	Protein Homology	CDS	17185	20187	.	-	0	ID=cds-OAR21087.1;Parent=gene-A8144_07690;Dbxref=NCBI_GP:OAR21087.1;Name=OAR21087.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010909026.1;locus_tag=A8144_07690;product=hypothetical protein;protein_id=OAR21087.1;transl_table=11
LYPH01000023.1	Genbank	gene	20184	20894	.	-	.	ID=gene-A8144_07695;Name=A8144_07695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07695
LYPH01000023.1	Protein Homology	CDS	20184	20894	.	-	0	ID=cds-OAR21088.1;Parent=gene-A8144_07695;Dbxref=NCBI_GP:OAR21088.1;Name=OAR21088.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010909025.1;locus_tag=A8144_07695;product=TetR family transcriptional regulator;protein_id=OAR21088.1;transl_table=11
LYPH01000023.1	Genbank	pseudogene	20991	21707	.	+	.	ID=gene-A8144_07700;Name=A8144_07700;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07700;pseudo=true
LYPH01000023.1	Protein Homology	CDS	20991	21707	.	+	0	ID=cds-A8144_07700;Parent=gene-A8144_07700;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007167085.1;locus_tag=A8144_07700;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000023.1	Genbank	gene	24065	24355	.	+	.	ID=gene-A8144_07705;Name=A8144_07705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07705
LYPH01000023.1	GeneMarkS+	CDS	24065	24355	.	+	0	ID=cds-OAR21089.1;Parent=gene-A8144_07705;Dbxref=NCBI_GP:OAR21089.1;Name=OAR21089.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07705;product=hypothetical protein;protein_id=OAR21089.1;transl_table=11
LYPH01000023.1	Genbank	gene	25894	26139	.	-	.	ID=gene-A8144_07710;Name=A8144_07710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07710
LYPH01000023.1	GeneMarkS+	CDS	25894	26139	.	-	0	ID=cds-OAR21090.1;Parent=gene-A8144_07710;Dbxref=NCBI_GP:OAR21090.1;Name=OAR21090.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07710;product=hypothetical protein;protein_id=OAR21090.1;transl_table=11
LYPH01000023.1	Genbank	pseudogene	27967	29299	.	-	.	ID=gene-A8144_07715;Name=A8144_07715;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07715;pseudo=true
LYPH01000023.1	Protein Homology	CDS	27967	29299	.	-	0	ID=cds-A8144_07715;Parent=gene-A8144_07715;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003876906.1;locus_tag=A8144_07715;product=two-component sensor histidine kinase;pseudo=true;transl_table=11
LYPH01000023.1	Genbank	gene	29698	31938	.	+	.	ID=gene-A8144_07720;Name=A8144_07720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07720
LYPH01000023.1	Protein Homology	CDS	29698	31938	.	+	0	ID=cds-OAR21091.1;Parent=gene-A8144_07720;Dbxref=NCBI_GP:OAR21091.1;Name=OAR21091.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010909024.1;locus_tag=A8144_07720;product=isocitrate dehydrogenase%2C NADP-dependent;protein_id=OAR21091.1;transl_table=11
LYPH01000023.1	Genbank	gene	33046	37875	.	-	.	ID=gene-A8144_07725;Name=A8144_07725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07725
LYPH01000023.1	Protein Homology	CDS	33046	37875	.	-	0	ID=cds-OAR21092.1;Parent=gene-A8144_07725;Dbxref=NCBI_GP:OAR21092.1;Name=OAR21092.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O53114.1;locus_tag=A8144_07725;product=HAD family hydrolase;protein_id=OAR21092.1;transl_table=11
LYPH01000023.1	Genbank	gene	38791	39003	.	-	.	ID=gene-A8144_07730;Name=A8144_07730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07730
LYPH01000023.1	GeneMarkS+	CDS	38791	39003	.	-	0	ID=cds-OAR21093.1;Parent=gene-A8144_07730;Dbxref=NCBI_GP:OAR21093.1;Name=OAR21093.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07730;product=hypothetical protein;protein_id=OAR21093.1;transl_table=11
LYPH01000023.1	Genbank	gene	41343	41735	.	-	.	ID=gene-A8144_07735;Name=A8144_07735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07735
LYPH01000023.1	GeneMarkS+	CDS	41343	41735	.	-	0	ID=cds-OAR21094.1;Parent=gene-A8144_07735;Dbxref=NCBI_GP:OAR21094.1;Name=OAR21094.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07735;product=hypothetical protein;protein_id=OAR21094.1;transl_table=11
LYPH01000023.1	Genbank	gene	42624	44624	.	+	.	ID=gene-A8144_07740;Name=A8144_07740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07740
LYPH01000023.1	Protein Homology	CDS	42624	44624	.	+	0	ID=cds-OAR21098.1;Parent=gene-A8144_07740;Dbxref=NCBI_GP:OAR21098.1;Name=OAR21098.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003874258.1;locus_tag=A8144_07740;product=hypothetical protein;protein_id=OAR21098.1;transl_table=11
LYPH01000023.1	Genbank	gene	44838	45158	.	-	.	ID=gene-A8144_07745;Name=A8144_07745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07745
LYPH01000023.1	Protein Homology	CDS	44838	45158	.	-	0	ID=cds-OAR21095.1;Parent=gene-A8144_07745;Dbxref=NCBI_GP:OAR21095.1;Name=OAR21095.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010909021.1;locus_tag=A8144_07745;product=hypothetical protein;protein_id=OAR21095.1;transl_table=11
LYPH01000023.1	Genbank	gene	46180	48036	.	+	.	ID=gene-A8144_07750;Name=A8144_07750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07750
LYPH01000023.1	Protein Homology	CDS	46180	48036	.	+	0	ID=cds-OAR21096.1;Parent=gene-A8144_07750;Dbxref=NCBI_GP:OAR21096.1;Name=OAR21096.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010909020.1;locus_tag=A8144_07750;product=manganese transporter;protein_id=OAR21096.1;transl_table=11
##sequence-region LYPH01000024.1 1 45601
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000024.1	Genbank	region	1	45601	.	+	.	ID=LYPH01000024.1:1..45601;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000024.1	Genbank	gene	1281	1628	.	-	.	ID=gene-A8144_07755;Name=A8144_07755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07755
LYPH01000024.1	GeneMarkS+	CDS	1281	1628	.	-	0	ID=cds-OAR21048.1;Parent=gene-A8144_07755;Dbxref=NCBI_GP:OAR21048.1;Name=OAR21048.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07755;product=hypothetical protein;protein_id=OAR21048.1;transl_table=11
LYPH01000024.1	Genbank	pseudogene	1878	3197	.	-	.	ID=gene-A8144_07760;Name=A8144_07760;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07760;pseudo=true
LYPH01000024.1	Protein Homology	CDS	1878	3197	.	-	0	ID=cds-A8144_07760;Parent=gene-A8144_07760;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003899865.1;locus_tag=A8144_07760;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000024.1	Genbank	gene	3262	4071	.	-	.	ID=gene-A8144_07765;Name=A8144_07765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07765
LYPH01000024.1	Protein Homology	CDS	3262	4071	.	-	0	ID=cds-OAR21049.1;Parent=gene-A8144_07765;Dbxref=NCBI_GP:OAR21049.1;Name=OAR21049.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O69492.1;locus_tag=A8144_07765;product=SAM-dependent methyltransferase;protein_id=OAR21049.1;transl_table=11
LYPH01000024.1	Genbank	gene	4124	5308	.	+	.	ID=gene-A8144_07770;Name=A8144_07770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07770
LYPH01000024.1	Protein Homology	CDS	4124	5308	.	+	0	ID=cds-OAR21050.1;Parent=gene-A8144_07770;Dbxref=NCBI_GP:OAR21050.1;Name=OAR21050.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908971.1;locus_tag=A8144_07770;product=glycosyl transferase;protein_id=OAR21050.1;transl_table=11
LYPH01000024.1	Genbank	gene	5671	7446	.	-	.	ID=gene-A8144_07775;Name=A8144_07775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07775
LYPH01000024.1	Protein Homology	CDS	5671	7446	.	-	0	ID=cds-OAR21051.1;Parent=gene-A8144_07775;Dbxref=NCBI_GP:OAR21051.1;Name=OAR21051.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003874070.1;locus_tag=A8144_07775;product=hypothetical protein;protein_id=OAR21051.1;transl_table=11
LYPH01000024.1	Genbank	gene	7575	8858	.	-	.	ID=gene-A8144_07780;Name=A8144_07780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07780
LYPH01000024.1	Protein Homology	CDS	7575	8858	.	-	0	ID=cds-OAR21072.1;Parent=gene-A8144_07780;Dbxref=NCBI_GP:OAR21072.1;Name=OAR21072.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908969.1;locus_tag=A8144_07780;product=hypothetical protein;protein_id=OAR21072.1;transl_table=11
LYPH01000024.1	Genbank	pseudogene	9064	10243	.	+	.	ID=gene-A8144_07785;Name=A8144_07785;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07785;pseudo=true
LYPH01000024.1	Protein Homology	CDS	9064	10243	.	+	0	ID=cds-A8144_07785;Parent=gene-A8144_07785;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009957637.1;locus_tag=A8144_07785;product=acyltransferase;pseudo=true;transl_table=11
LYPH01000024.1	Genbank	gene	10308	10508	.	-	.	ID=gene-A8144_07790;Name=A8144_07790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07790
LYPH01000024.1	GeneMarkS+	CDS	10308	10508	.	-	0	ID=cds-OAR21052.1;Parent=gene-A8144_07790;Dbxref=NCBI_GP:OAR21052.1;Name=OAR21052.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07790;product=hypothetical protein;protein_id=OAR21052.1;transl_table=11
LYPH01000024.1	Genbank	pseudogene	11694	13276	.	+	.	ID=gene-A8144_07795;Name=A8144_07795;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07795;pseudo=true
LYPH01000024.1	Protein Homology	CDS	11694	13276	.	+	0	ID=cds-A8144_07795;Parent=gene-A8144_07795;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020727873.1;locus_tag=A8144_07795;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000024.1	Genbank	pseudogene	13557	13866	.	+	.	ID=gene-A8144_07800;Name=A8144_07800;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07800;pseudo=true
LYPH01000024.1	Protein Homology	CDS	13557	13866	.	+	0	ID=cds-A8144_07800;Parent=gene-A8144_07800;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015292684.1;locus_tag=A8144_07800;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000024.1	Genbank	gene	13985	14230	.	+	.	ID=gene-A8144_07805;Name=A8144_07805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07805
LYPH01000024.1	GeneMarkS+	CDS	13985	14230	.	+	0	ID=cds-OAR21053.1;Parent=gene-A8144_07805;Dbxref=NCBI_GP:OAR21053.1;Name=OAR21053.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07805;product=hypothetical protein;protein_id=OAR21053.1;transl_table=11
LYPH01000024.1	Genbank	pseudogene	14406	15271	.	+	.	ID=gene-A8144_07810;Name=A8144_07810;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07810;pseudo=true
LYPH01000024.1	Protein Homology	CDS	14406	15271	.	+	0	ID=cds-A8144_07810;Parent=gene-A8144_07810;Note=Catalyzes the rate-limiting step in dNTP synthesis%3B frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_004571725.1;locus_tag=A8144_07810;product=ribonucleotide-diphosphate reductase subunit beta;pseudo=true;transl_table=11
LYPH01000024.1	Genbank	gene	16339	17712	.	-	.	ID=gene-A8144_07815;Name=A8144_07815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07815
LYPH01000024.1	Protein Homology	CDS	16339	17712	.	-	0	ID=cds-OAR21054.1;Parent=gene-A8144_07815;Dbxref=NCBI_GP:OAR21054.1;Name=OAR21054.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O69497.1;locus_tag=A8144_07815;product=NADP-dependent succinic semialdehyde dehydrogenase;protein_id=OAR21054.1;transl_table=11
LYPH01000024.1	Genbank	gene	17983	18177	.	-	.	ID=gene-A8144_07820;Name=A8144_07820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07820
LYPH01000024.1	GeneMarkS+	CDS	17983	18177	.	-	0	ID=cds-OAR21055.1;Parent=gene-A8144_07820;Dbxref=NCBI_GP:OAR21055.1;Name=OAR21055.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07820;product=hypothetical protein;protein_id=OAR21055.1;transl_table=11
LYPH01000024.1	Genbank	gene	18486	18701	.	+	.	ID=gene-A8144_07825;Name=A8144_07825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07825
LYPH01000024.1	GeneMarkS+	CDS	18486	18701	.	+	0	ID=cds-OAR21056.1;Parent=gene-A8144_07825;Dbxref=NCBI_GP:OAR21056.1;Name=OAR21056.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07825;product=hypothetical protein;protein_id=OAR21056.1;transl_table=11
LYPH01000024.1	Genbank	gene	19574	19861	.	-	.	ID=gene-A8144_07830;Name=A8144_07830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07830
LYPH01000024.1	GeneMarkS+	CDS	19574	19861	.	-	0	ID=cds-OAR21057.1;Parent=gene-A8144_07830;Dbxref=NCBI_GP:OAR21057.1;Name=OAR21057.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07830;product=hypothetical protein;protein_id=OAR21057.1;transl_table=11
LYPH01000024.1	Genbank	gene	20206	20442	.	-	.	ID=gene-A8144_07835;Name=A8144_07835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07835
LYPH01000024.1	GeneMarkS+	CDS	20206	20442	.	-	0	ID=cds-OAR21058.1;Parent=gene-A8144_07835;Dbxref=NCBI_GP:OAR21058.1;Name=OAR21058.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07835;product=hypothetical protein;protein_id=OAR21058.1;transl_table=11
LYPH01000024.1	Genbank	gene	20622	24839	.	-	.	ID=gene-A8144_07840;Name=A8144_07840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07840
LYPH01000024.1	Protein Homology	CDS	20622	24839	.	-	0	ID=cds-OAR21073.1;Parent=gene-A8144_07840;Dbxref=NCBI_GP:OAR21073.1;Name=OAR21073.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908966.1;locus_tag=A8144_07840;product=hypothetical protein;protein_id=OAR21073.1;transl_table=11
LYPH01000024.1	Genbank	gene	24955	25128	.	-	.	ID=gene-A8144_07845;Name=A8144_07845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07845
LYPH01000024.1	Protein Homology	CDS	24955	25128	.	-	0	ID=cds-OAR21059.1;Parent=gene-A8144_07845;Dbxref=NCBI_GP:OAR21059.1;Name=OAR21059.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003889056.1;locus_tag=A8144_07845;product=hypothetical protein;protein_id=OAR21059.1;transl_table=11
LYPH01000024.1	Genbank	gene	25275	26438	.	+	.	ID=gene-A8144_07850;Name=A8144_07850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07850
LYPH01000024.1	Protein Homology	CDS	25275	26438	.	+	0	ID=cds-OAR21060.1;Parent=gene-A8144_07850;Dbxref=NCBI_GP:OAR21060.1;Name=OAR21060.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908964.1;locus_tag=A8144_07850;product=beta-glucosidase;protein_id=OAR21060.1;transl_table=11
LYPH01000024.1	Genbank	gene	26508	27134	.	+	.	ID=gene-A8144_07855;Name=A8144_07855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07855
LYPH01000024.1	Protein Homology	CDS	26508	27134	.	+	0	ID=cds-OAR21061.1;Parent=gene-A8144_07855;Dbxref=NCBI_GP:OAR21061.1;Name=OAR21061.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908963.1;locus_tag=A8144_07855;product=TetR family transcriptional regulator;protein_id=OAR21061.1;transl_table=11
LYPH01000024.1	Genbank	gene	27537	28016	.	-	.	ID=gene-A8144_07860;Name=A8144_07860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07860
LYPH01000024.1	Protein Homology	CDS	27537	28016	.	-	0	ID=cds-OAR21062.1;Parent=gene-A8144_07860;Dbxref=NCBI_GP:OAR21062.1;Name=OAR21062.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908962.1;locus_tag=A8144_07860;product=hypothetical protein;protein_id=OAR21062.1;transl_table=11
LYPH01000024.1	Genbank	gene	28125	28967	.	-	.	ID=gene-A8144_07865;Name=A8144_07865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07865
LYPH01000024.1	Protein Homology	CDS	28125	28967	.	-	0	ID=cds-OAR21063.1;Parent=gene-A8144_07865;Dbxref=NCBI_GP:OAR21063.1;Name=OAR21063.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009979621.1;locus_tag=A8144_07865;product=dehydratase;protein_id=OAR21063.1;transl_table=11
LYPH01000024.1	Genbank	gene	29410	29796	.	+	.	ID=gene-A8144_07870;Name=A8144_07870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07870
LYPH01000024.1	GeneMarkS+	CDS	29410	29796	.	+	0	ID=cds-OAR21064.1;Parent=gene-A8144_07870;Dbxref=NCBI_GP:OAR21064.1;Name=OAR21064.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07870;product=hypothetical protein;protein_id=OAR21064.1;transl_table=11
LYPH01000024.1	Genbank	gene	30068	31432	.	-	.	ID=gene-A8144_07875;Name=A8144_07875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07875
LYPH01000024.1	Protein Homology	CDS	30068	31432	.	-	0	ID=cds-OAR21065.1;Parent=gene-A8144_07875;Dbxref=NCBI_GP:OAR21065.1;Name=OAR21065.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014383446.1;locus_tag=A8144_07875;product=3-oxoacyl-ACP reductase;protein_id=OAR21065.1;transl_table=11
LYPH01000024.1	Genbank	gene	31537	32910	.	+	.	ID=gene-A8144_07880;Name=A8144_07880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07880
LYPH01000024.1	Protein Homology	CDS	31537	32910	.	+	0	ID=cds-OAR21066.1;Parent=gene-A8144_07880;Dbxref=NCBI_GP:OAR21066.1;Name=OAR21066.1;Note=Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase%2C catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908959.1;locus_tag=A8144_07880;product=acetyl-CoA acetyltransferase;protein_id=OAR21066.1;transl_table=11
LYPH01000024.1	Genbank	gene	33332	35167	.	-	.	ID=gene-A8144_07885;Name=A8144_07885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07885
LYPH01000024.1	Protein Homology	CDS	33332	35167	.	-	0	ID=cds-OAR21067.1;Parent=gene-A8144_07885;Dbxref=NCBI_GP:OAR21067.1;Name=OAR21067.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003401312.1;locus_tag=A8144_07885;product=butyryl-CoA dehydrogenase;protein_id=OAR21067.1;transl_table=11
LYPH01000024.1	Genbank	gene	35519	35809	.	-	.	ID=gene-A8144_07890;Name=A8144_07890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07890
LYPH01000024.1	Protein Homology	CDS	35519	35809	.	-	0	ID=cds-OAR21074.1;Parent=gene-A8144_07890;Dbxref=NCBI_GP:OAR21074.1;Name=OAR21074.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908957.1;locus_tag=A8144_07890;product=hypothetical protein;protein_id=OAR21074.1;transl_table=11
LYPH01000024.1	Genbank	gene	36686	37174	.	+	.	ID=gene-A8144_07895;Name=A8144_07895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07895
LYPH01000024.1	Protein Homology	CDS	36686	37174	.	+	0	ID=cds-OAR21068.1;Parent=gene-A8144_07895;Dbxref=NCBI_GP:OAR21068.1;Name=OAR21068.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908956.1;locus_tag=A8144_07895;product=oxidoreductase;protein_id=OAR21068.1;transl_table=11
LYPH01000024.1	Genbank	gene	37387	37659	.	+	.	ID=gene-A8144_07900;Name=A8144_07900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07900
LYPH01000024.1	GeneMarkS+	CDS	37387	37659	.	+	0	ID=cds-OAR21069.1;Parent=gene-A8144_07900;Dbxref=NCBI_GP:OAR21069.1;Name=OAR21069.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07900;product=hypothetical protein;protein_id=OAR21069.1;transl_table=11
LYPH01000024.1	Genbank	pseudogene	38043	39699	.	-	.	ID=gene-A8144_07905;Name=A8144_07905;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07905;pseudo=true
LYPH01000024.1	Protein Homology	CDS	38043	39699	.	-	0	ID=cds-A8144_07905;Parent=gene-A8144_07905;Note=part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers)%3B SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556%3B SdhC binds ubiquinone%3B oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol%3B frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014385985.1;locus_tag=A8144_07905;product=fumarate reductase/succinate dehydrogenase flavoprotein subunit;pseudo=true;transl_table=11
LYPH01000024.1	Genbank	gene	40806	41102	.	-	.	ID=gene-A8144_07910;Name=A8144_07910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07910
LYPH01000024.1	Protein Homology	CDS	40806	41102	.	-	0	ID=cds-OAR21070.1;Parent=gene-A8144_07910;Dbxref=NCBI_GP:OAR21070.1;Name=OAR21070.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908955.1;locus_tag=A8144_07910;product=hypothetical protein;protein_id=OAR21070.1;transl_table=11
LYPH01000024.1	Genbank	gene	41425	41625	.	-	.	ID=gene-A8144_07915;Name=A8144_07915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07915
LYPH01000024.1	GeneMarkS+	CDS	41425	41625	.	-	0	ID=cds-OAR21071.1;Parent=gene-A8144_07915;Dbxref=NCBI_GP:OAR21071.1;Name=OAR21071.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07915;product=hypothetical protein;protein_id=OAR21071.1;transl_table=11
LYPH01000024.1	Genbank	pseudogene	41854	44252	.	+	.	ID=gene-A8144_07920;Name=A8144_07920;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07920;pseudo=true
LYPH01000024.1	Protein Homology	CDS	41854	44252	.	+	0	ID=cds-A8144_07920;Parent=gene-A8144_07920;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003874029.1;locus_tag=A8144_07920;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000024.1	Genbank	pseudogene	44335	44623	.	+	.	ID=gene-A8144_07925;Name=A8144_07925;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07925;pseudo=true
LYPH01000024.1	Protein Homology	CDS	44335	44623	.	+	0	ID=cds-A8144_07925;Parent=gene-A8144_07925;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007768959.1;locus_tag=A8144_07925;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region LYPH01000025.1 1 42641
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000025.1	Genbank	region	1	42641	.	+	.	ID=LYPH01000025.1:1..42641;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000025.1	Genbank	pseudogene	1	205	.	+	.	ID=gene-A8144_07930;Name=A8144_07930;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07930;pseudo=true
LYPH01000025.1	GeneMarkS+	CDS	1	205	.	+	1	ID=cds-A8144_07930;Parent=gene-A8144_07930;Note=incomplete%3B too short partial abutting assembly gap%3B missing start;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07930;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000025.1	Genbank	gene	413	625	.	-	.	ID=gene-A8144_07935;Name=A8144_07935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07935
LYPH01000025.1	GeneMarkS+	CDS	413	625	.	-	0	ID=cds-OAR21011.1;Parent=gene-A8144_07935;Dbxref=NCBI_GP:OAR21011.1;Name=OAR21011.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07935;product=hypothetical protein;protein_id=OAR21011.1;transl_table=11
LYPH01000025.1	Genbank	gene	630	962	.	-	.	ID=gene-A8144_07940;Name=A8144_07940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07940
LYPH01000025.1	GeneMarkS+	CDS	630	962	.	-	0	ID=cds-OAR21012.1;Parent=gene-A8144_07940;Dbxref=NCBI_GP:OAR21012.1;Name=OAR21012.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07940;product=hypothetical protein;protein_id=OAR21012.1;transl_table=11
LYPH01000025.1	Genbank	gene	1430	1894	.	-	.	ID=gene-A8144_07945;Name=A8144_07945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07945
LYPH01000025.1	Protein Homology	CDS	1430	1894	.	-	0	ID=cds-OAR21013.1;Parent=gene-A8144_07945;Dbxref=NCBI_GP:OAR21013.1;Name=OAR21013.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908535.1;locus_tag=A8144_07945;product=hypothetical protein;protein_id=OAR21013.1;transl_table=11
LYPH01000025.1	Genbank	pseudogene	2198	2578	.	+	.	ID=gene-A8144_07950;Name=A8144_07950;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07950;pseudo=true
LYPH01000025.1	Protein Homology	CDS	2198	2578	.	+	0	ID=cds-A8144_07950;Parent=gene-A8144_07950;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P64970.1;locus_tag=A8144_07950;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000025.1	Genbank	gene	2575	2760	.	+	.	ID=gene-A8144_07955;Name=A8144_07955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07955
LYPH01000025.1	GeneMarkS+	CDS	2575	2760	.	+	0	ID=cds-OAR21014.1;Parent=gene-A8144_07955;Dbxref=NCBI_GP:OAR21014.1;Name=OAR21014.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07955;product=hypothetical protein;protein_id=OAR21014.1;transl_table=11
LYPH01000025.1	Genbank	gene	3014	3217	.	-	.	ID=gene-A8144_07960;Name=A8144_07960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07960
LYPH01000025.1	GeneMarkS+	CDS	3014	3217	.	-	0	ID=cds-OAR21015.1;Parent=gene-A8144_07960;Dbxref=NCBI_GP:OAR21015.1;Name=OAR21015.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07960;product=hypothetical protein;protein_id=OAR21015.1;transl_table=11
LYPH01000025.1	Genbank	gene	3695	4138	.	-	.	ID=gene-A8144_07965;Name=A8144_07965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07965
LYPH01000025.1	Protein Homology	CDS	3695	4138	.	-	0	ID=cds-OAR21016.1;Parent=gene-A8144_07965;Dbxref=NCBI_GP:OAR21016.1;Name=OAR21016.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908536.1;locus_tag=A8144_07965;product=RNA-binding protein;protein_id=OAR21016.1;transl_table=11
LYPH01000025.1	Genbank	gene	4481	4666	.	-	.	ID=gene-A8144_07970;Name=A8144_07970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07970
LYPH01000025.1	GeneMarkS+	CDS	4481	4666	.	-	0	ID=cds-OAR21017.1;Parent=gene-A8144_07970;Dbxref=NCBI_GP:OAR21017.1;Name=OAR21017.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07970;product=hypothetical protein;protein_id=OAR21017.1;transl_table=11
LYPH01000025.1	Genbank	pseudogene	4786	6414	.	+	.	ID=gene-A8144_07975;Name=A8144_07975;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_07975;pseudo=true
LYPH01000025.1	Protein Homology	CDS	4786	6414	.	+	0	ID=cds-A8144_07975;Parent=gene-A8144_07975;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012395077.1;locus_tag=A8144_07975;product=Na+/H+ antiporter;pseudo=true;transl_table=11
LYPH01000025.1	Genbank	gene	7088	7393	.	+	.	ID=gene-A8144_07980;Name=A8144_07980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07980
LYPH01000025.1	Protein Homology	CDS	7088	7393	.	+	0	ID=cds-OAR21018.1;Parent=gene-A8144_07980;Dbxref=NCBI_GP:OAR21018.1;Name=OAR21018.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908537.1;locus_tag=A8144_07980;product=hypothetical protein;protein_id=OAR21018.1;transl_table=11
LYPH01000025.1	Genbank	gene	7427	7651	.	+	.	ID=gene-A8144_07985;Name=A8144_07985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07985
LYPH01000025.1	GeneMarkS+	CDS	7427	7651	.	+	0	ID=cds-OAR21019.1;Parent=gene-A8144_07985;Dbxref=NCBI_GP:OAR21019.1;Name=OAR21019.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07985;product=hypothetical protein;protein_id=OAR21019.1;transl_table=11
LYPH01000025.1	Genbank	gene	7725	7916	.	+	.	ID=gene-A8144_07990;Name=A8144_07990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07990
LYPH01000025.1	GeneMarkS+	CDS	7725	7916	.	+	0	ID=cds-OAR21020.1;Parent=gene-A8144_07990;Dbxref=NCBI_GP:OAR21020.1;Name=OAR21020.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07990;product=hypothetical protein;protein_id=OAR21020.1;transl_table=11
LYPH01000025.1	Genbank	gene	8551	8805	.	-	.	ID=gene-A8144_07995;Name=A8144_07995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_07995
LYPH01000025.1	GeneMarkS+	CDS	8551	8805	.	-	0	ID=cds-OAR21021.1;Parent=gene-A8144_07995;Dbxref=NCBI_GP:OAR21021.1;Name=OAR21021.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_07995;product=hypothetical protein;protein_id=OAR21021.1;transl_table=11
LYPH01000025.1	Genbank	gene	9587	10795	.	+	.	ID=gene-A8144_08000;Name=A8144_08000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08000
LYPH01000025.1	Protein Homology	CDS	9587	10795	.	+	0	ID=cds-OAR21022.1;Parent=gene-A8144_08000;Dbxref=NCBI_GP:OAR21022.1;Name=OAR21022.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBM9.1;locus_tag=A8144_08000;product=cystathionine beta-lyase;protein_id=OAR21022.1;transl_table=11
LYPH01000025.1	Genbank	pseudogene	11920	12223	.	-	.	ID=gene-A8144_08005;Name=A8144_08005;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08005;pseudo=true
LYPH01000025.1	Protein Homology	CDS	11920	12223	.	-	0	ID=cds-A8144_08005;Parent=gene-A8144_08005;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014214513.1;locus_tag=A8144_08005;product=MerR family transcriptional regulator;pseudo=true;transl_table=11
LYPH01000025.1	Genbank	gene	12372	12818	.	+	.	ID=gene-A8144_08010;Name=A8144_08010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08010
LYPH01000025.1	Protein Homology	CDS	12372	12818	.	+	0	ID=cds-OAR21023.1;Parent=gene-A8144_08010;Dbxref=NCBI_GP:OAR21023.1;Name=OAR21023.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014712205.1;locus_tag=A8144_08010;product=hypothetical protein;protein_id=OAR21023.1;transl_table=11
LYPH01000025.1	Genbank	gene	13377	13790	.	+	.	ID=gene-A8144_08015;Name=A8144_08015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08015
LYPH01000025.1	Protein Homology	CDS	13377	13790	.	+	0	ID=cds-OAR21024.1;Parent=gene-A8144_08015;Dbxref=NCBI_GP:OAR21024.1;Name=OAR21024.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P13733.1;locus_tag=A8144_08015;product=hypothetical protein;protein_id=OAR21024.1;transl_table=11
LYPH01000025.1	Genbank	gene	14540	14746	.	-	.	ID=gene-A8144_08020;Name=A8144_08020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08020
LYPH01000025.1	GeneMarkS+	CDS	14540	14746	.	-	0	ID=cds-OAR21025.1;Parent=gene-A8144_08020;Dbxref=NCBI_GP:OAR21025.1;Name=OAR21025.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08020;product=hypothetical protein;protein_id=OAR21025.1;transl_table=11
LYPH01000025.1	Genbank	gene	14994	15977	.	-	.	ID=gene-A8144_08025;Name=A8144_08025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08025
LYPH01000025.1	Protein Homology	CDS	14994	15977	.	-	0	ID=cds-OAR21026.1;Parent=gene-A8144_08025;Dbxref=NCBI_GP:OAR21026.1;Name=OAR21026.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908541.1;locus_tag=A8144_08025;product=ATPase/protein kinase;protein_id=OAR21026.1;transl_table=11
LYPH01000025.1	Genbank	gene	15978	18254	.	-	.	ID=gene-A8144_08030;Name=A8144_08030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08030
LYPH01000025.1	Protein Homology	CDS	15978	18254	.	-	0	ID=cds-OAR21027.1;Parent=gene-A8144_08030;Dbxref=NCBI_GP:OAR21027.1;Name=OAR21027.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908542.1;locus_tag=A8144_08030;product=methylmalonyl-CoA mutase;protein_id=OAR21027.1;transl_table=11
LYPH01000025.1	Genbank	gene	18260	20170	.	-	.	ID=gene-A8144_08035;Name=A8144_08035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08035
LYPH01000025.1	Protein Homology	CDS	18260	20170	.	-	0	ID=cds-OAR21028.1;Parent=gene-A8144_08035;Dbxref=NCBI_GP:OAR21028.1;Name=OAR21028.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003877673.1;locus_tag=A8144_08035;product=methylmalonyl-CoA mutase small subunit;protein_id=OAR21028.1;transl_table=11
LYPH01000025.1	Genbank	gene	20836	21123	.	+	.	ID=gene-A8144_08040;Name=A8144_08040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08040
LYPH01000025.1	GeneMarkS+	CDS	20836	21123	.	+	0	ID=cds-OAR21029.1;Parent=gene-A8144_08040;Dbxref=NCBI_GP:OAR21029.1;Name=OAR21029.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08040;product=hypothetical protein;protein_id=OAR21029.1;transl_table=11
LYPH01000025.1	Genbank	gene	21270	22394	.	-	.	ID=gene-A8144_08045;Name=A8144_08045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08045
LYPH01000025.1	Protein Homology	CDS	21270	22394	.	-	0	ID=cds-OAR21030.1;Parent=gene-A8144_08045;Dbxref=NCBI_GP:OAR21030.1;Name=OAR21030.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908544.1;locus_tag=A8144_08045;product=hypothetical protein;protein_id=OAR21030.1;transl_table=11
LYPH01000025.1	Genbank	gene	22431	22862	.	-	.	ID=gene-A8144_08050;Name=A8144_08050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08050
LYPH01000025.1	Protein Homology	CDS	22431	22862	.	-	0	ID=cds-OAR21031.1;Parent=gene-A8144_08050;Dbxref=NCBI_GP:OAR21031.1;Name=OAR21031.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908545.1;locus_tag=A8144_08050;product=hypothetical protein;protein_id=OAR21031.1;transl_table=11
LYPH01000025.1	Genbank	gene	22920	23816	.	+	.	ID=gene-A8144_08055;Name=A8144_08055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08055
LYPH01000025.1	Protein Homology	CDS	22920	23816	.	+	0	ID=cds-OAR21032.1;Parent=gene-A8144_08055;Dbxref=NCBI_GP:OAR21032.1;Name=OAR21032.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBM3.1;locus_tag=A8144_08055;product=hypothetical protein;protein_id=OAR21032.1;transl_table=11
LYPH01000025.1	Genbank	gene	23853	24863	.	-	.	ID=gene-A8144_08060;Name=A8144_08060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08060
LYPH01000025.1	Protein Homology	CDS	23853	24863	.	-	0	ID=cds-OAR21033.1;Parent=gene-A8144_08060;Dbxref=NCBI_GP:OAR21033.1;Name=OAR21033.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBM2.1;locus_tag=A8144_08060;product=ferrochelatase;protein_id=OAR21033.1;transl_table=11
LYPH01000025.1	Genbank	gene	24870	25679	.	-	.	ID=gene-A8144_08065;Name=A8144_08065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08065
LYPH01000025.1	Protein Homology	CDS	24870	25679	.	-	0	ID=cds-OAR21034.1;Parent=gene-A8144_08065;Dbxref=NCBI_GP:OAR21034.1;Name=OAR21034.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908548.1;locus_tag=A8144_08065;product=enoyl-[acyl-carrier-protein] reductase;protein_id=OAR21034.1;transl_table=11
LYPH01000025.1	Genbank	gene	25709	26470	.	-	.	ID=gene-A8144_08070;Name=A8144_08070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08070
LYPH01000025.1	Protein Homology	CDS	25709	26470	.	-	0	ID=cds-OAR21035.1;Parent=gene-A8144_08070;Dbxref=NCBI_GP:OAR21035.1;Name=OAR21035.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011739633.1;locus_tag=A8144_08070;product=beta-ketoacyl-ACP reductase;protein_id=OAR21035.1;transl_table=11
LYPH01000025.1	Genbank	gene	26543	27550	.	-	.	ID=gene-A8144_08075;Name=A8144_08075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08075
LYPH01000025.1	Protein Homology	CDS	26543	27550	.	-	0	ID=cds-OAR21036.1;Parent=gene-A8144_08075;Dbxref=NCBI_GP:OAR21036.1;Name=OAR21036.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015356078.1;locus_tag=A8144_08075;product=hypothetical protein;protein_id=OAR21036.1;transl_table=11
LYPH01000025.1	Genbank	gene	27594	28505	.	-	.	ID=gene-A8144_08080;Name=A8144_08080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08080
LYPH01000025.1	Protein Homology	CDS	27594	28505	.	-	0	ID=cds-OAR21047.1;Parent=gene-A8144_08080;Dbxref=NCBI_GP:OAR21047.1;Name=OAR21047.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007171843.1;locus_tag=A8144_08080;product=hypothetical protein;protein_id=OAR21047.1;transl_table=11
LYPH01000025.1	Genbank	gene	28553	29686	.	-	.	ID=gene-A8144_08085;Name=A8144_08085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08085
LYPH01000025.1	Protein Homology	CDS	28553	29686	.	-	0	ID=cds-OAR21037.1;Parent=gene-A8144_08085;Dbxref=NCBI_GP:OAR21037.1;Name=OAR21037.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007171844.1;locus_tag=A8144_08085;product=ATPase;protein_id=OAR21037.1;transl_table=11
LYPH01000025.1	Genbank	gene	29921	30646	.	-	.	ID=gene-A8144_08090;Name=A8144_08090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08090
LYPH01000025.1	Protein Homology	CDS	29921	30646	.	-	0	ID=cds-OAR21038.1;Parent=gene-A8144_08090;Dbxref=NCBI_GP:OAR21038.1;Name=OAR21038.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908553.1;locus_tag=A8144_08090;product=peptidase C40;protein_id=OAR21038.1;transl_table=11
LYPH01000025.1	Genbank	gene	30673	32112	.	-	.	ID=gene-A8144_08095;Name=A8144_08095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08095
LYPH01000025.1	Protein Homology	CDS	30673	32112	.	-	0	ID=cds-OAR21039.1;Parent=gene-A8144_08095;Dbxref=NCBI_GP:OAR21039.1;Name=OAR21039.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908554.1;locus_tag=A8144_08095;product=peptidase M23;protein_id=OAR21039.1;transl_table=11
LYPH01000025.1	Genbank	gene	32352	32924	.	-	.	ID=gene-A8144_08100;Name=A8144_08100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08100
LYPH01000025.1	Protein Homology	CDS	32352	32924	.	-	0	ID=cds-OAR21040.1;Parent=gene-A8144_08100;Dbxref=NCBI_GP:OAR21040.1;Name=OAR21040.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908555.1;locus_tag=A8144_08100;product=hypothetical protein;protein_id=OAR21040.1;transl_table=11
LYPH01000025.1	Genbank	gene	33207	36041	.	+	.	ID=gene-A8144_08105;Name=acnA;gbkey=Gene;gene=acnA;gene_biotype=protein_coding;locus_tag=A8144_08105
LYPH01000025.1	Protein Homology	CDS	33207	36041	.	+	0	ID=cds-OAR21041.1;Parent=gene-A8144_08105;Dbxref=NCBI_GP:OAR21041.1;Name=OAR21041.1;Note=catalyzes the conversion of citrate to isocitrate;gbkey=CDS;gene=acnA;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908556.1;locus_tag=A8144_08105;product=aconitate hydratase;protein_id=OAR21041.1;transl_table=11
LYPH01000025.1	Genbank	pseudogene	36041	36618	.	+	.	ID=gene-A8144_08110;Name=A8144_08110;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08110;pseudo=true
LYPH01000025.1	Protein Homology	CDS	36041	36618	.	+	0	ID=cds-A8144_08110;Parent=gene-A8144_08110;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011894523.1;locus_tag=A8144_08110;product=TetR family transcriptional regulator;pseudo=true;transl_table=11
LYPH01000025.1	Genbank	gene	37030	38667	.	-	.	ID=gene-A8144_08115;Name=A8144_08115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08115
LYPH01000025.1	Protein Homology	CDS	37030	38667	.	-	0	ID=cds-OAR21042.1;Parent=gene-A8144_08115;Dbxref=NCBI_GP:OAR21042.1;Name=OAR21042.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010841029.1;locus_tag=A8144_08115;product=ABC transporter;protein_id=OAR21042.1;transl_table=11
LYPH01000025.1	Genbank	pseudogene	38707	39519	.	-	.	ID=gene-A8144_08120;Name=A8144_08120;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08120;pseudo=true
LYPH01000025.1	Protein Homology	CDS	38707	39519	.	-	0	ID=cds-A8144_08120;Parent=gene-A8144_08120;Note=Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA%3B frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005253232.1;locus_tag=A8144_08120;product=enoyl-CoA hydratase;pseudo=true;transl_table=11
LYPH01000025.1	Genbank	gene	39596	39988	.	-	.	ID=gene-A8144_08125;Name=A8144_08125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08125
LYPH01000025.1	Protein Homology	CDS	39596	39988	.	-	0	ID=cds-OAR21043.1;Parent=gene-A8144_08125;Dbxref=NCBI_GP:OAR21043.1;Name=OAR21043.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908558.1;locus_tag=A8144_08125;product=thiol reductase thioredoxin;protein_id=OAR21043.1;transl_table=11
LYPH01000025.1	Genbank	gene	40009	40233	.	+	.	ID=gene-A8144_08130;Name=A8144_08130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08130
LYPH01000025.1	GeneMarkS+	CDS	40009	40233	.	+	0	ID=cds-OAR21044.1;Parent=gene-A8144_08130;Dbxref=NCBI_GP:OAR21044.1;Name=OAR21044.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08130;product=hypothetical protein;protein_id=OAR21044.1;transl_table=11
LYPH01000025.1	Genbank	gene	41860	42207	.	+	.	ID=gene-A8144_08135;Name=A8144_08135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08135
LYPH01000025.1	GeneMarkS+	CDS	41860	42207	.	+	0	ID=cds-OAR21045.1;Parent=gene-A8144_08135;Dbxref=NCBI_GP:OAR21045.1;Name=OAR21045.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08135;product=hypothetical protein;protein_id=OAR21045.1;transl_table=11
LYPH01000025.1	Genbank	gene	42380	42592	.	-	.	ID=gene-A8144_08140;Name=A8144_08140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08140
LYPH01000025.1	GeneMarkS+	CDS	42380	42592	.	-	0	ID=cds-OAR21046.1;Parent=gene-A8144_08140;Dbxref=NCBI_GP:OAR21046.1;Name=OAR21046.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08140;product=hypothetical protein;protein_id=OAR21046.1;transl_table=11
##sequence-region LYPH01000026.1 1 39946
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000026.1	Genbank	region	1	39946	.	+	.	ID=LYPH01000026.1:1..39946;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000026.1	Genbank	gene	1	3763	.	+	.	ID=gene-A8144_08145;Name=A8144_08145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08145;partial=true;start_range=.,1
LYPH01000026.1	Protein Homology	CDS	1	3763	.	+	1	ID=cds-OAR20988.1;Parent=gene-A8144_08145;Dbxref=NCBI_GP:OAR20988.1;Name=OAR20988.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907524.1;locus_tag=A8144_08145;partial=true;product=polyketide synthase;protein_id=OAR20988.1;start_range=.,1;transl_table=11
LYPH01000026.1	Genbank	gene	3760	5313	.	+	.	ID=gene-A8144_08150;Name=A8144_08150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08150
LYPH01000026.1	Protein Homology	CDS	3760	5313	.	+	0	ID=cds-OAR20989.1;Parent=gene-A8144_08150;Dbxref=NCBI_GP:OAR20989.1;Name=OAR20989.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907525.1;locus_tag=A8144_08150;product=methylmalonyl-CoA carboxyltransferase;protein_id=OAR20989.1;transl_table=11
LYPH01000026.1	Genbank	gene	5777	6016	.	-	.	ID=gene-A8144_08155;Name=A8144_08155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08155
LYPH01000026.1	GeneMarkS+	CDS	5777	6016	.	-	0	ID=cds-OAR20990.1;Parent=gene-A8144_08155;Dbxref=NCBI_GP:OAR20990.1;Name=OAR20990.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08155;product=hypothetical protein;protein_id=OAR20990.1;transl_table=11
LYPH01000026.1	Genbank	gene	6208	6627	.	-	.	ID=gene-A8144_08160;Name=A8144_08160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08160
LYPH01000026.1	GeneMarkS+	CDS	6208	6627	.	-	0	ID=cds-OAR20991.1;Parent=gene-A8144_08160;Dbxref=NCBI_GP:OAR20991.1;Name=OAR20991.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08160;product=hypothetical protein;protein_id=OAR20991.1;transl_table=11
LYPH01000026.1	Genbank	gene	8464	11715	.	-	.	ID=gene-A8144_08165;Name=A8144_08165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08165
LYPH01000026.1	Protein Homology	CDS	8464	11715	.	-	0	ID=cds-OAR20992.1;Parent=gene-A8144_08165;Dbxref=NCBI_GP:OAR20992.1;Name=OAR20992.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CDA9.1;locus_tag=A8144_08165;product=arabinosyltransferase;protein_id=OAR20992.1;transl_table=11
LYPH01000026.1	Genbank	gene	11712	15047	.	-	.	ID=gene-A8144_08170;Name=A8144_08170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08170
LYPH01000026.1	Protein Homology	CDS	11712	15047	.	-	0	ID=cds-OAR20993.1;Parent=gene-A8144_08170;Dbxref=NCBI_GP:OAR20993.1;Name=OAR20993.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P71485.1;locus_tag=A8144_08170;product=arabinosyltransferase;protein_id=OAR20993.1;transl_table=11
LYPH01000026.1	Genbank	gene	15504	15695	.	+	.	ID=gene-A8144_08175;Name=A8144_08175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08175
LYPH01000026.1	GeneMarkS+	CDS	15504	15695	.	+	0	ID=cds-OAR20994.1;Parent=gene-A8144_08175;Dbxref=NCBI_GP:OAR20994.1;Name=OAR20994.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08175;product=hypothetical protein;protein_id=OAR20994.1;transl_table=11
LYPH01000026.1	Genbank	gene	16006	19218	.	-	.	ID=gene-A8144_08180;Name=A8144_08180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08180
LYPH01000026.1	Protein Homology	CDS	16006	19218	.	-	0	ID=cds-OAR20995.1;Parent=gene-A8144_08180;Dbxref=NCBI_GP:OAR20995.1;Name=OAR20995.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CDA7.1;locus_tag=A8144_08180;product=arabinosyltransferase;protein_id=OAR20995.1;transl_table=11
LYPH01000026.1	Genbank	gene	19351	21249	.	-	.	ID=gene-A8144_08185;Name=A8144_08185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08185
LYPH01000026.1	Protein Homology	CDS	19351	21249	.	-	0	ID=cds-OAR20996.1;Parent=gene-A8144_08185;Dbxref=NCBI_GP:OAR20996.1;Name=OAR20996.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CDA6.1;locus_tag=A8144_08185;product=arabinofuranosyltransferase;protein_id=OAR20996.1;transl_table=11
LYPH01000026.1	Genbank	gene	21252	22016	.	-	.	ID=gene-A8144_08190;Name=A8144_08190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08190
LYPH01000026.1	Protein Homology	CDS	21252	22016	.	-	0	ID=cds-OAR20997.1;Parent=gene-A8144_08190;Dbxref=NCBI_GP:OAR20997.1;Name=OAR20997.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P66784.1;locus_tag=A8144_08190;product=short-chain dehydrogenase;protein_id=OAR20997.1;transl_table=11
LYPH01000026.1	Genbank	gene	22019	23401	.	-	.	ID=gene-A8144_08195;Name=A8144_08195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08195
LYPH01000026.1	Protein Homology	CDS	22019	23401	.	-	0	ID=cds-OAR20998.1;Parent=gene-A8144_08195;Dbxref=NCBI_GP:OAR20998.1;Name=OAR20998.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907531.1;locus_tag=A8144_08195;product=decaprenylphosphoryl-beta-D-ribose oxidase;protein_id=OAR20998.1;transl_table=11
LYPH01000026.1	Genbank	gene	23469	23897	.	-	.	ID=gene-A8144_08200;Name=A8144_08200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08200
LYPH01000026.1	Protein Homology	CDS	23469	23897	.	-	0	ID=cds-OAR20999.1;Parent=gene-A8144_08200;Dbxref=NCBI_GP:OAR20999.1;Name=OAR20999.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009956764.1;locus_tag=A8144_08200;product=hypothetical protein;protein_id=OAR20999.1;transl_table=11
LYPH01000026.1	Genbank	gene	24674	25504	.	-	.	ID=gene-A8144_08205;Name=A8144_08205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08205
LYPH01000026.1	Protein Homology	CDS	24674	25504	.	-	0	ID=cds-OAR21000.1;Parent=gene-A8144_08205;Dbxref=NCBI_GP:OAR21000.1;Name=OAR21000.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019972577.1;locus_tag=A8144_08205;product=sugar ABC transporter permease;protein_id=OAR21000.1;transl_table=11
LYPH01000026.1	Genbank	gene	25554	26474	.	-	.	ID=gene-A8144_08210;Name=A8144_08210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08210
LYPH01000026.1	Protein Homology	CDS	25554	26474	.	-	0	ID=cds-OAR21001.1;Parent=gene-A8144_08210;Dbxref=NCBI_GP:OAR21001.1;Name=OAR21001.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008263072.1;locus_tag=A8144_08210;product=galactofuranosyl transferase;protein_id=OAR21001.1;transl_table=11
LYPH01000026.1	Genbank	gene	26467	27285	.	-	.	ID=gene-A8144_08215;Name=A8144_08215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08215
LYPH01000026.1	Protein Homology	CDS	26467	27285	.	-	0	ID=cds-OAR21002.1;Parent=gene-A8144_08215;Dbxref=NCBI_GP:OAR21002.1;Name=OAR21002.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907535.1;locus_tag=A8144_08215;product=ABC transporter ATP-binding protein;protein_id=OAR21002.1;transl_table=11
LYPH01000026.1	Genbank	gene	27304	27840	.	-	.	ID=gene-A8144_08220;Name=A8144_08220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08220
LYPH01000026.1	Protein Homology	CDS	27304	27840	.	-	0	ID=cds-OAR21003.1;Parent=gene-A8144_08220;Dbxref=NCBI_GP:OAR21003.1;Name=OAR21003.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011738485.1;locus_tag=A8144_08220;product=hypothetical protein;protein_id=OAR21003.1;transl_table=11
LYPH01000026.1	Genbank	gene	27856	29820	.	-	.	ID=gene-A8144_08225;Name=A8144_08225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08225
LYPH01000026.1	Protein Homology	CDS	27856	29820	.	-	0	ID=cds-OAR21004.1;Parent=gene-A8144_08225;Dbxref=NCBI_GP:OAR21004.1;Name=OAR21004.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907537.1;locus_tag=A8144_08225;product=hypothetical protein;protein_id=OAR21004.1;transl_table=11
LYPH01000026.1	Genbank	gene	29947	31143	.	+	.	ID=gene-A8144_08230;Name=A8144_08230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08230
LYPH01000026.1	Protein Homology	CDS	29947	31143	.	+	0	ID=cds-OAR21010.1;Parent=gene-A8144_08230;Dbxref=NCBI_GP:OAR21010.1;Name=OAR21010.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015309895.1;locus_tag=A8144_08230;product=cysteine desulfurase-like protein;protein_id=OAR21010.1;transl_table=11
LYPH01000026.1	Genbank	gene	31140	32150	.	-	.	ID=gene-A8144_08235;Name=A8144_08235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08235
LYPH01000026.1	Protein Homology	CDS	31140	32150	.	-	0	ID=cds-OAR21005.1;Parent=gene-A8144_08235;Dbxref=NCBI_GP:OAR21005.1;Name=OAR21005.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907539.1;locus_tag=A8144_08235;product=NAD(P)H-quinone oxidoreductase;protein_id=OAR21005.1;transl_table=11
LYPH01000026.1	Genbank	gene	32203	32292	.	+	.	ID=gene-A8144_08240;Name=A8144_08240;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_08240
LYPH01000026.1	tRNAscan-SE	tRNA	32203	32292	.	+	.	ID=rna-A8144_08240;Parent=gene-A8144_08240;anticodon=(pos:32237..32239);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_08240;product=tRNA-Ser
LYPH01000026.1	tRNAscan-SE	exon	32203	32292	.	+	.	ID=exon-A8144_08240-1;Parent=rna-A8144_08240;anticodon=(pos:32237..32239);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_08240;product=tRNA-Ser
LYPH01000026.1	Genbank	gene	32386	33621	.	-	.	ID=gene-A8144_08245;Name=A8144_08245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08245
LYPH01000026.1	Protein Homology	CDS	32386	33621	.	-	0	ID=cds-OAR21006.1;Parent=gene-A8144_08245;Dbxref=NCBI_GP:OAR21006.1;Name=OAR21006.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907540.1;locus_tag=A8144_08245;product=hydrolase;protein_id=OAR21006.1;transl_table=11
LYPH01000026.1	Genbank	gene	33632	34468	.	-	.	ID=gene-A8144_08250;Name=A8144_08250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08250
LYPH01000026.1	Protein Homology	CDS	33632	34468	.	-	0	ID=cds-OAR21007.1;Parent=gene-A8144_08250;Dbxref=NCBI_GP:OAR21007.1;Name=OAR21007.1;Note=Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907541.1;locus_tag=A8144_08250;product=enoyl-CoA hydratase;protein_id=OAR21007.1;transl_table=11
LYPH01000026.1	Genbank	gene	35661	35930	.	-	.	ID=gene-A8144_08255;Name=A8144_08255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08255
LYPH01000026.1	Protein Homology	CDS	35661	35930	.	-	0	ID=cds-OAR21008.1;Parent=gene-A8144_08255;Dbxref=NCBI_GP:OAR21008.1;Name=OAR21008.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907542.1;locus_tag=A8144_08255;product=hypothetical protein;protein_id=OAR21008.1;transl_table=11
LYPH01000026.1	Genbank	pseudogene	36003	36617	.	-	.	ID=gene-A8144_08260;Name=A8144_08260;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08260;pseudo=true
LYPH01000026.1	Protein Homology	CDS	36003	36617	.	-	0	ID=cds-A8144_08260;Parent=gene-A8144_08260;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015631042.1;locus_tag=A8144_08260;product=aminotransferase;pseudo=true;transl_table=11
LYPH01000026.1	Genbank	gene	36926	37018	.	+	.	ID=gene-A8144_08265;Name=A8144_08265;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_08265
LYPH01000026.1	tRNAscan-SE	tRNA	36926	37018	.	+	.	ID=rna-A8144_08265;Parent=gene-A8144_08265;anticodon=(pos:36960..36962);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_08265;product=tRNA-Ser
LYPH01000026.1	tRNAscan-SE	exon	36926	37018	.	+	.	ID=exon-A8144_08265-1;Parent=rna-A8144_08265;anticodon=(pos:36960..36962);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_08265;product=tRNA-Ser
LYPH01000026.1	Genbank	gene	37038	37110	.	+	.	ID=gene-A8144_08270;Name=A8144_08270;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_08270
LYPH01000026.1	tRNAscan-SE	tRNA	37038	37110	.	+	.	ID=rna-A8144_08270;Parent=gene-A8144_08270;anticodon=(pos:37071..37073);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_08270;product=tRNA-Arg
LYPH01000026.1	tRNAscan-SE	exon	37038	37110	.	+	.	ID=exon-A8144_08270-1;Parent=rna-A8144_08270;anticodon=(pos:37071..37073);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_08270;product=tRNA-Arg
LYPH01000026.1	Genbank	pseudogene	37191	38149	.	-	.	ID=gene-A8144_08275;Name=A8144_08275;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08275;pseudo=true
LYPH01000026.1	Protein Homology	CDS	37191	38149	.	-	0	ID=cds-A8144_08275;Parent=gene-A8144_08275;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015357605.1;locus_tag=A8144_08275;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000026.1	Genbank	gene	38840	39280	.	-	.	ID=gene-A8144_08280;Name=A8144_08280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08280
LYPH01000026.1	Protein Homology	CDS	38840	39280	.	-	0	ID=cds-OAR21009.1;Parent=gene-A8144_08280;Dbxref=NCBI_GP:OAR21009.1;Name=OAR21009.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008261971.1;locus_tag=A8144_08280;product=cyclase;protein_id=OAR21009.1;transl_table=11
LYPH01000026.1	Genbank	pseudogene	39507	39946	.	+	.	ID=gene-A8144_08285;Name=A8144_08285;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08285;pseudo=true
LYPH01000026.1	Protein Homology	CDS	39507	39946	.	+	0	ID=cds-A8144_08285;Parent=gene-A8144_08285;Note=incomplete%3B too short partial abutting assembly gap%3B missing stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P95134.1;locus_tag=A8144_08285;product=glycosyl transferase family 1;pseudo=true;transl_table=11
##sequence-region LYPH01000027.1 1 39539
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000027.1	Genbank	region	1	39539	.	+	.	ID=LYPH01000027.1:1..39539;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000027.1	Genbank	gene	334	3330	.	-	.	ID=gene-A8144_08290;Name=A8144_08290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08290
LYPH01000027.1	Protein Homology	CDS	334	3330	.	-	0	ID=cds-OAR20966.1;Parent=gene-A8144_08290;Dbxref=NCBI_GP:OAR20966.1;Name=OAR20966.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014384545.1;locus_tag=A8144_08290;product=bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase;protein_id=OAR20966.1;transl_table=11
LYPH01000027.1	Genbank	gene	3379	4725	.	-	.	ID=gene-A8144_08295;Name=A8144_08295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08295
LYPH01000027.1	Protein Homology	CDS	3379	4725	.	-	0	ID=cds-OAR20967.1;Parent=gene-A8144_08295;Dbxref=NCBI_GP:OAR20967.1;Name=OAR20967.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005144598.1;locus_tag=A8144_08295;product=type I glutamate--ammonia ligase;protein_id=OAR20967.1;transl_table=11
LYPH01000027.1	Genbank	gene	4822	6357	.	-	.	ID=gene-A8144_08300;Name=A8144_08300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08300
LYPH01000027.1	Protein Homology	CDS	4822	6357	.	-	0	ID=cds-OAR20968.1;Parent=gene-A8144_08300;Dbxref=NCBI_GP:OAR20968.1;Name=OAR20968.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908445.1;locus_tag=A8144_08300;product=hydrolase;protein_id=OAR20968.1;transl_table=11
LYPH01000027.1	Genbank	gene	6432	7988	.	-	.	ID=gene-A8144_08305;Name=A8144_08305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08305
LYPH01000027.1	Protein Homology	CDS	6432	7988	.	-	0	ID=cds-OAR20969.1;Parent=gene-A8144_08305;Dbxref=NCBI_GP:OAR20969.1;Name=OAR20969.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007170857.1;locus_tag=A8144_08305;product=hydrolase;protein_id=OAR20969.1;transl_table=11
LYPH01000027.1	Genbank	pseudogene	8040	9427	.	-	.	ID=gene-A8144_08310;Name=A8144_08310;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08310;pseudo=true
LYPH01000027.1	Protein Homology	CDS	8040	9427	.	-	0	ID=cds-A8144_08310;Parent=gene-A8144_08310;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007770660.1;locus_tag=A8144_08310;product=diacylglycerol O-acyltransferase;pseudo=true;transl_table=11
LYPH01000027.1	Genbank	gene	9577	10437	.	+	.	ID=gene-A8144_08315;Name=A8144_08315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08315
LYPH01000027.1	Protein Homology	CDS	9577	10437	.	+	0	ID=cds-OAR20970.1;Parent=gene-A8144_08315;Dbxref=NCBI_GP:OAR20970.1;Name=OAR20970.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003910899.1;locus_tag=A8144_08315;product=3-methyl-2-oxobutanoate hydroxymethyltransferase;protein_id=OAR20970.1;transl_table=11
LYPH01000027.1	Genbank	pseudogene	10825	12271	.	+	.	ID=gene-A8144_08320;Name=A8144_08320;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08320;pseudo=true
LYPH01000027.1	Protein Homology	CDS	10825	12271	.	+	0	ID=cds-A8144_08320;Parent=gene-A8144_08320;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020725679.1;locus_tag=A8144_08320;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000027.1	Genbank	gene	12297	12714	.	-	.	ID=gene-A8144_08325;Name=rnpB;gbkey=Gene;gene=rnpB;gene_biotype=RNase_P_RNA;locus_tag=A8144_08325
LYPH01000027.1	cmsearch	RNase_P_RNA	12297	12714	.	-	.	ID=rna-A8144_08325;Parent=gene-A8144_08325;Dbxref=RFAM:RF00010;gbkey=ncRNA;gene=rnpB;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=A8144_08325;product=RNase P RNA component class A
LYPH01000027.1	cmsearch	exon	12297	12714	.	-	.	ID=exon-A8144_08325-1;Parent=rna-A8144_08325;Dbxref=RFAM:RF00010;gbkey=ncRNA;gene=rnpB;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=A8144_08325;product=RNase P RNA component class A
LYPH01000027.1	Genbank	gene	14459	15574	.	-	.	ID=gene-A8144_08330;Name=A8144_08330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08330
LYPH01000027.1	Protein Homology	CDS	14459	15574	.	-	0	ID=cds-OAR20971.1;Parent=gene-A8144_08330;Dbxref=NCBI_GP:OAR20971.1;Name=OAR20971.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908448.1;locus_tag=A8144_08330;product=bifunctional RNase H/acid phosphatase;protein_id=OAR20971.1;transl_table=11
LYPH01000027.1	Genbank	gene	15571	16269	.	-	.	ID=gene-A8144_08335;Name=A8144_08335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08335
LYPH01000027.1	Protein Homology	CDS	15571	16269	.	-	0	ID=cds-OAR20972.1;Parent=gene-A8144_08335;Dbxref=NCBI_GP:OAR20972.1;Name=OAR20972.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBS9.1;locus_tag=A8144_08335;product=hypothetical protein;protein_id=OAR20972.1;transl_table=11
LYPH01000027.1	Genbank	gene	16315	17472	.	-	.	ID=gene-A8144_08340;Name=A8144_08340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08340
LYPH01000027.1	Protein Homology	CDS	16315	17472	.	-	0	ID=cds-OAR20987.1;Parent=gene-A8144_08340;Dbxref=NCBI_GP:OAR20987.1;Name=OAR20987.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O69481.1;locus_tag=A8144_08340;product=Nif3-like dinuclear metal center hexameric protein;protein_id=OAR20987.1;transl_table=11
LYPH01000027.1	Genbank	pseudogene	17505	18432	.	-	.	ID=gene-A8144_08345;Name=A8144_08345;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08345;pseudo=true
LYPH01000027.1	Protein Homology	CDS	17505	18432	.	-	0	ID=cds-A8144_08345;Parent=gene-A8144_08345;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020787050.1;locus_tag=A8144_08345;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000027.1	Genbank	gene	18626	18913	.	+	.	ID=gene-A8144_08350;Name=A8144_08350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08350
LYPH01000027.1	GeneMarkS+	CDS	18626	18913	.	+	0	ID=cds-OAR20973.1;Parent=gene-A8144_08350;Dbxref=NCBI_GP:OAR20973.1;Name=OAR20973.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08350;product=hypothetical protein;protein_id=OAR20973.1;transl_table=11
LYPH01000027.1	Genbank	pseudogene	18969	19410	.	+	.	ID=gene-A8144_08355;Name=A8144_08355;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08355;pseudo=true
LYPH01000027.1	Protein Homology	CDS	18969	19410	.	+	0	ID=cds-A8144_08355;Parent=gene-A8144_08355;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003878184.1;locus_tag=A8144_08355;product=protein tyrosine phosphatase;pseudo=true;transl_table=11
LYPH01000027.1	Genbank	gene	19410	20222	.	+	.	ID=gene-A8144_08360;Name=A8144_08360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08360
LYPH01000027.1	Protein Homology	CDS	19410	20222	.	+	0	ID=cds-OAR20974.1;Parent=gene-A8144_08360;Dbxref=NCBI_GP:OAR20974.1;Name=OAR20974.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908451.1;locus_tag=A8144_08360;product=hypothetical protein;protein_id=OAR20974.1;transl_table=11
LYPH01000027.1	Genbank	pseudogene	20204	21125	.	-	.	ID=gene-A8144_08365;Name=A8144_08365;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08365;pseudo=true
LYPH01000027.1	Protein Homology	CDS	20204	21125	.	-	0	ID=cds-A8144_08365;Parent=gene-A8144_08365;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q10518.1;locus_tag=A8144_08365;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000027.1	Genbank	gene	21702	21902	.	+	.	ID=gene-A8144_08370;Name=A8144_08370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08370
LYPH01000027.1	GeneMarkS+	CDS	21702	21902	.	+	0	ID=cds-OAR20975.1;Parent=gene-A8144_08370;Dbxref=NCBI_GP:OAR20975.1;Name=OAR20975.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08370;product=hypothetical protein;protein_id=OAR20975.1;transl_table=11
LYPH01000027.1	Genbank	gene	22020	22223	.	+	.	ID=gene-A8144_08375;Name=A8144_08375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08375
LYPH01000027.1	GeneMarkS+	CDS	22020	22223	.	+	0	ID=cds-OAR20976.1;Parent=gene-A8144_08375;Dbxref=NCBI_GP:OAR20976.1;Name=OAR20976.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08375;product=hypothetical protein;protein_id=OAR20976.1;transl_table=11
LYPH01000027.1	Genbank	pseudogene	22932	23158	.	+	.	ID=gene-A8144_08380;Name=A8144_08380;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08380;pseudo=true
LYPH01000027.1	Protein Homology	CDS	22932	23158	.	+	0	ID=cds-A8144_08380;Parent=gene-A8144_08380;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014942217.1;locus_tag=A8144_08380;product=toxin-antitoxin system protein;pseudo=true;transl_table=11
LYPH01000027.1	Genbank	gene	24237	24620	.	-	.	ID=gene-A8144_08385;Name=A8144_08385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08385
LYPH01000027.1	GeneMarkS+	CDS	24237	24620	.	-	0	ID=cds-OAR20977.1;Parent=gene-A8144_08385;Dbxref=NCBI_GP:OAR20977.1;Name=OAR20977.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08385;product=hypothetical protein;protein_id=OAR20977.1;transl_table=11
LYPH01000027.1	Genbank	gene	24581	25120	.	-	.	ID=gene-A8144_08390;Name=A8144_08390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08390
LYPH01000027.1	GeneMarkS+	CDS	24581	25120	.	-	0	ID=cds-OAR20978.1;Parent=gene-A8144_08390;Dbxref=NCBI_GP:OAR20978.1;Name=OAR20978.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08390;product=hypothetical protein;protein_id=OAR20978.1;transl_table=11
LYPH01000027.1	Genbank	gene	27683	27757	.	-	.	ID=gene-A8144_08395;Name=A8144_08395;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_08395
LYPH01000027.1	tRNAscan-SE	tRNA	27683	27757	.	-	.	ID=rna-A8144_08395;Parent=gene-A8144_08395;anticodon=(pos:complement(27723..27725));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_08395;product=tRNA-Val
LYPH01000027.1	tRNAscan-SE	exon	27683	27757	.	-	.	ID=exon-A8144_08395-1;Parent=rna-A8144_08395;anticodon=(pos:complement(27723..27725));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_08395;product=tRNA-Val
LYPH01000027.1	Genbank	pseudogene	27843	28237	.	-	.	ID=gene-A8144_08400;Name=A8144_08400;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08400;pseudo=true
LYPH01000027.1	Protein Homology	CDS	27843	28237	.	-	0	ID=cds-A8144_08400;Parent=gene-A8144_08400;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005628352.1;locus_tag=A8144_08400;product=peroxiredoxin;pseudo=true;transl_table=11
LYPH01000027.1	Genbank	gene	28272	28694	.	-	.	ID=gene-A8144_08405;Name=A8144_08405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08405
LYPH01000027.1	Protein Homology	CDS	28272	28694	.	-	0	ID=cds-OAR20979.1;Parent=gene-A8144_08405;Dbxref=NCBI_GP:OAR20979.1;Name=OAR20979.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003911787.1;locus_tag=A8144_08405;product=hypothetical protein;protein_id=OAR20979.1;transl_table=11
LYPH01000027.1	Genbank	pseudogene	28845	29282	.	-	.	ID=gene-A8144_08410;Name=A8144_08410;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08410;pseudo=true
LYPH01000027.1	Protein Homology	CDS	28845	29282	.	-	0	ID=cds-A8144_08410;Parent=gene-A8144_08410;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015356257.1;locus_tag=A8144_08410;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000027.1	Genbank	gene	29607	32417	.	+	.	ID=gene-A8144_08415;Name=A8144_08415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08415
LYPH01000027.1	Protein Homology	CDS	29607	32417	.	+	0	ID=cds-OAR20980.1;Parent=gene-A8144_08415;Dbxref=NCBI_GP:OAR20980.1;Name=OAR20980.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908453.1;locus_tag=A8144_08415;product=pyruvate dehydrogenase (acetyl-transferring)%2C homodimeric type;protein_id=OAR20980.1;transl_table=11
LYPH01000027.1	Genbank	gene	32503	33747	.	+	.	ID=gene-A8144_08420;Name=A8144_08420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08420
LYPH01000027.1	Protein Homology	CDS	32503	33747	.	+	0	ID=cds-OAR20981.1;Parent=gene-A8144_08420;Dbxref=NCBI_GP:OAR20981.1;Name=OAR20981.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908454.1;locus_tag=A8144_08420;product=PucR family transcriptional regulator;protein_id=OAR20981.1;transl_table=11
LYPH01000027.1	Genbank	gene	33958	34872	.	+	.	ID=gene-A8144_08425;Name=A8144_08425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08425
LYPH01000027.1	Protein Homology	CDS	33958	34872	.	+	0	ID=cds-OAR20982.1;Parent=gene-A8144_08425;Dbxref=NCBI_GP:OAR20982.1;Name=OAR20982.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019699153.1;locus_tag=A8144_08425;product=ACP S-malonyltransferase;protein_id=OAR20982.1;transl_table=11
LYPH01000027.1	Genbank	gene	34972	35319	.	+	.	ID=gene-A8144_08430;Name=A8144_08430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08430
LYPH01000027.1	Protein Homology	CDS	34972	35319	.	+	0	ID=cds-OAR20983.1;Parent=gene-A8144_08430;Dbxref=NCBI_GP:OAR20983.1;Name=OAR20983.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007770614.1;locus_tag=A8144_08430;product=acyl carrier protein;protein_id=OAR20983.1;transl_table=11
LYPH01000027.1	Genbank	gene	35316	36566	.	+	.	ID=gene-A8144_08435;Name=A8144_08435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08435
LYPH01000027.1	Protein Homology	CDS	35316	36566	.	+	0	ID=cds-OAR20984.1;Parent=gene-A8144_08435;Dbxref=NCBI_GP:OAR20984.1;Name=OAR20984.1;Note=FabF%3B beta-ketoacyl-ACP synthase II%2C KASII%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003933336.1;locus_tag=A8144_08435;product=beta-ketoacyl-[acyl-carrier-protein] synthase II;protein_id=OAR20984.1;transl_table=11
LYPH01000027.1	Genbank	gene	36579	37856	.	+	.	ID=gene-A8144_08440;Name=A8144_08440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08440
LYPH01000027.1	Protein Homology	CDS	36579	37856	.	+	0	ID=cds-OAR20985.1;Parent=gene-A8144_08440;Dbxref=NCBI_GP:OAR20985.1;Name=OAR20985.1;Note=FabF%3B beta-ketoacyl-ACP synthase II%2C KASII%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908458.1;locus_tag=A8144_08440;product=beta-ketoacyl-[acyl-carrier-protein] synthase II;protein_id=OAR20985.1;transl_table=11
LYPH01000027.1	Genbank	gene	37887	39308	.	+	.	ID=gene-A8144_08445;Name=A8144_08445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08445
LYPH01000027.1	Protein Homology	CDS	37887	39308	.	+	0	ID=cds-OAR20986.1;Parent=gene-A8144_08445;Dbxref=NCBI_GP:OAR20986.1;Name=OAR20986.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020730624.1;locus_tag=A8144_08445;product=propionyl-CoA carboxylase subunit beta;protein_id=OAR20986.1;transl_table=11
##sequence-region LYPH01000028.1 1 37935
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000028.1	Genbank	region	1	37935	.	+	.	ID=LYPH01000028.1:1..37935;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000028.1	Genbank	gene	113	382	.	+	.	ID=gene-A8144_08450;Name=A8144_08450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08450
LYPH01000028.1	GeneMarkS+	CDS	113	382	.	+	0	ID=cds-OAR20941.1;Parent=gene-A8144_08450;Dbxref=NCBI_GP:OAR20941.1;Name=OAR20941.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08450;product=hypothetical protein;protein_id=OAR20941.1;transl_table=11
LYPH01000028.1	Genbank	pseudogene	615	1959	.	-	.	ID=gene-A8144_08455;Name=A8144_08455;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08455;pseudo=true
LYPH01000028.1	Protein Homology	CDS	615	1959	.	-	0	ID=cds-A8144_08455;Parent=gene-A8144_08455;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009978241.1;locus_tag=A8144_08455;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000028.1	Genbank	gene	1989	3575	.	+	.	ID=gene-A8144_08460;Name=A8144_08460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08460
LYPH01000028.1	Protein Homology	CDS	1989	3575	.	+	0	ID=cds-OAR20942.1;Parent=gene-A8144_08460;Dbxref=NCBI_GP:OAR20942.1;Name=OAR20942.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003900609.1;locus_tag=A8144_08460;product=phosphoglycerate dehydrogenase;protein_id=OAR20942.1;transl_table=11
LYPH01000028.1	Genbank	gene	3625	4635	.	+	.	ID=gene-A8144_08465;Name=A8144_08465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08465
LYPH01000028.1	Protein Homology	CDS	3625	4635	.	+	0	ID=cds-OAR20943.1;Parent=gene-A8144_08465;Dbxref=NCBI_GP:OAR20943.1;Name=OAR20943.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007171319.1;locus_tag=A8144_08465;product=3-isopropylmalate dehydrogenase;protein_id=OAR20943.1;transl_table=11
LYPH01000028.1	Genbank	pseudogene	4660	5828	.	-	.	ID=gene-A8144_08470;Name=A8144_08470;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08470;pseudo=true
LYPH01000028.1	Protein Homology	CDS	4660	5828	.	-	0	ID=cds-A8144_08470;Parent=gene-A8144_08470;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015294086.1;locus_tag=A8144_08470;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000028.1	Genbank	gene	5895	6701	.	+	.	ID=gene-A8144_08475;Name=A8144_08475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08475
LYPH01000028.1	Protein Homology	CDS	5895	6701	.	+	0	ID=cds-OAR20944.1;Parent=gene-A8144_08475;Dbxref=NCBI_GP:OAR20944.1;Name=OAR20944.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014380735.1;locus_tag=A8144_08475;product=2-hydroxyhepta-2%2C4-diene-1%2C7-dioate isomerase;protein_id=OAR20944.1;transl_table=11
LYPH01000028.1	Genbank	gene	6698	8206	.	+	.	ID=gene-A8144_08480;Name=A8144_08480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08480
LYPH01000028.1	Protein Homology	CDS	6698	8206	.	+	0	ID=cds-OAR20945.1;Parent=gene-A8144_08480;Dbxref=NCBI_GP:OAR20945.1;Name=OAR20945.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33120.1;locus_tag=A8144_08480;product=glutamate--tRNA ligase;protein_id=OAR20945.1;transl_table=11
LYPH01000028.1	Genbank	gene	8447	8521	.	+	.	ID=gene-A8144_08485;Name=A8144_08485;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_08485
LYPH01000028.1	tRNAscan-SE	tRNA	8447	8521	.	+	.	ID=rna-A8144_08485;Parent=gene-A8144_08485;anticodon=(pos:8480..8482);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_08485;product=tRNA-Gln
LYPH01000028.1	tRNAscan-SE	exon	8447	8521	.	+	.	ID=exon-A8144_08485-1;Parent=rna-A8144_08485;anticodon=(pos:8480..8482);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_08485;product=tRNA-Gln
LYPH01000028.1	Genbank	gene	8609	8684	.	+	.	ID=gene-A8144_08490;Name=A8144_08490;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_08490
LYPH01000028.1	tRNAscan-SE	tRNA	8609	8684	.	+	.	ID=rna-A8144_08490;Parent=gene-A8144_08490;anticodon=(pos:8643..8645);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_08490;product=tRNA-Glu
LYPH01000028.1	tRNAscan-SE	exon	8609	8684	.	+	.	ID=exon-A8144_08490-1;Parent=rna-A8144_08490;anticodon=(pos:8643..8645);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_08490;product=tRNA-Glu
LYPH01000028.1	Genbank	gene	9070	9294	.	+	.	ID=gene-A8144_08495;Name=A8144_08495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08495
LYPH01000028.1	GeneMarkS+	CDS	9070	9294	.	+	0	ID=cds-OAR20946.1;Parent=gene-A8144_08495;Dbxref=NCBI_GP:OAR20946.1;Name=OAR20946.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08495;product=hypothetical protein;protein_id=OAR20946.1;transl_table=11
LYPH01000028.1	Genbank	pseudogene	9373	10083	.	-	.	ID=gene-A8144_08500;Name=A8144_08500;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08500;pseudo=true
LYPH01000028.1	Protein Homology	CDS	9373	10083	.	-	0	ID=cds-A8144_08500;Parent=gene-A8144_08500;Note=internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003889230.1;locus_tag=A8144_08500;product=IclR family transcriptional regulator;pseudo=true;transl_table=11
LYPH01000028.1	Genbank	gene	10167	11618	.	+	.	ID=gene-A8144_08505;Name=A8144_08505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08505
LYPH01000028.1	Protein Homology	CDS	10167	11618	.	+	0	ID=cds-OAR20947.1;Parent=gene-A8144_08505;Dbxref=NCBI_GP:OAR20947.1;Name=OAR20947.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007775506.1;locus_tag=A8144_08505;product=3-isopropylmalate dehydratase large subunit;protein_id=OAR20947.1;transl_table=11
LYPH01000028.1	Genbank	gene	11661	12257	.	+	.	ID=gene-A8144_08510;Name=A8144_08510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08510
LYPH01000028.1	Protein Homology	CDS	11661	12257	.	+	0	ID=cds-OAR20948.1;Parent=gene-A8144_08510;Dbxref=NCBI_GP:OAR20948.1;Name=OAR20948.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019735337.1;locus_tag=A8144_08510;product=3-isopropylmalate dehydratase small subunit;protein_id=OAR20948.1;transl_table=11
LYPH01000028.1	Genbank	gene	12471	13073	.	+	.	ID=gene-A8144_08515;Name=A8144_08515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08515
LYPH01000028.1	Protein Homology	CDS	12471	13073	.	+	0	ID=cds-OAR20949.1;Parent=gene-A8144_08515;Dbxref=NCBI_GP:OAR20949.1;Name=OAR20949.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33125.1;locus_tag=A8144_08515;product=DNA-binding protein;protein_id=OAR20949.1;transl_table=11
LYPH01000028.1	Genbank	gene	13142	14080	.	-	.	ID=gene-A8144_08520;Name=A8144_08520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08520
LYPH01000028.1	Protein Homology	CDS	13142	14080	.	-	0	ID=cds-OAR20950.1;Parent=gene-A8144_08520;Dbxref=NCBI_GP:OAR20950.1;Name=OAR20950.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007775500.1;locus_tag=A8144_08520;product=NUDIX hydrolase;protein_id=OAR20950.1;transl_table=11
LYPH01000028.1	Genbank	gene	14156	16375	.	-	.	ID=gene-A8144_08525;Name=A8144_08525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08525
LYPH01000028.1	Protein Homology	CDS	14156	16375	.	-	0	ID=cds-OAR20951.1;Parent=gene-A8144_08525;Dbxref=NCBI_GP:OAR20951.1;Name=OAR20951.1;Note=catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33127.1;locus_tag=A8144_08525;product=RNA degradosome polyphosphate kinase;protein_id=OAR20951.1;transl_table=11
LYPH01000028.1	Genbank	gene	16459	17109	.	-	.	ID=gene-A8144_08530;Name=A8144_08530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08530
LYPH01000028.1	Protein Homology	CDS	16459	17109	.	-	0	ID=cds-OAR20952.1;Parent=gene-A8144_08530;Dbxref=NCBI_GP:OAR20952.1;Name=OAR20952.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33128.1;locus_tag=A8144_08530;product=2-phospho-L-lactate guanylyltransferase;protein_id=OAR20952.1;transl_table=11
LYPH01000028.1	Genbank	gene	17656	18705	.	+	.	ID=gene-A8144_08535;Name=A8144_08535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08535
LYPH01000028.1	Protein Homology	CDS	17656	18705	.	+	0	ID=cds-OAR20962.1;Parent=gene-A8144_08535;Dbxref=NCBI_GP:OAR20962.1;Name=OAR20962.1;Note=catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009978224.1;locus_tag=A8144_08535;product=glycerol-3-phosphate dehydrogenase;protein_id=OAR20962.1;transl_table=11
LYPH01000028.1	Genbank	gene	18817	19971	.	+	.	ID=gene-A8144_08540;Name=A8144_08540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08540
LYPH01000028.1	Protein Homology	CDS	18817	19971	.	+	0	ID=cds-OAR20953.1;Parent=gene-A8144_08540;Dbxref=NCBI_GP:OAR20953.1;Name=OAR20953.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBS0.1;locus_tag=A8144_08540;product=D-alanine--D-alanine ligase A;protein_id=OAR20953.1;transl_table=11
LYPH01000028.1	Genbank	gene	19980	20555	.	-	.	ID=gene-A8144_08545;Name=A8144_08545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08545
LYPH01000028.1	Protein Homology	CDS	19980	20555	.	-	0	ID=cds-OAR20963.1;Parent=gene-A8144_08545;Dbxref=NCBI_GP:OAR20963.1;Name=OAR20963.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908472.1;locus_tag=A8144_08545;product=hypothetical protein;protein_id=OAR20963.1;transl_table=11
LYPH01000028.1	Genbank	gene	20739	21716	.	+	.	ID=gene-A8144_08550;Name=A8144_08550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08550
LYPH01000028.1	Protein Homology	CDS	20739	21716	.	+	0	ID=cds-OAR20964.1;Parent=gene-A8144_08550;Dbxref=NCBI_GP:OAR20964.1;Name=OAR20964.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908471.1;locus_tag=A8144_08550;product=thiamine-phosphate kinase;protein_id=OAR20964.1;transl_table=11
LYPH01000028.1	Genbank	gene	21830	22513	.	+	.	ID=gene-A8144_08555;Name=A8144_08555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08555
LYPH01000028.1	Protein Homology	CDS	21830	22513	.	+	0	ID=cds-OAR20954.1;Parent=gene-A8144_08555;Dbxref=NCBI_GP:OAR20954.1;Name=OAR20954.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003415031.1;locus_tag=A8144_08555;product=uracil-DNA glycosylase;protein_id=OAR20954.1;transl_table=11
LYPH01000028.1	Genbank	gene	22651	22830	.	+	.	ID=gene-A8144_08560;Name=A8144_08560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08560
LYPH01000028.1	GeneMarkS+	CDS	22651	22830	.	+	0	ID=cds-OAR20955.1;Parent=gene-A8144_08560;Dbxref=NCBI_GP:OAR20955.1;Name=OAR20955.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08560;product=hypothetical protein;protein_id=OAR20955.1;transl_table=11
LYPH01000028.1	Genbank	pseudogene	23417	24833	.	+	.	ID=gene-A8144_08565;Name=A8144_08565;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08565;pseudo=true
LYPH01000028.1	Protein Homology	CDS	23417	24833	.	+	0	ID=cds-A8144_08565;Parent=gene-A8144_08565;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015456466.1;locus_tag=A8144_08565;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000028.1	Genbank	gene	24836	27067	.	+	.	ID=gene-A8144_08570;Name=A8144_08570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08570
LYPH01000028.1	Protein Homology	CDS	24836	27067	.	+	0	ID=cds-OAR20956.1;Parent=gene-A8144_08570;Dbxref=NCBI_GP:OAR20956.1;Name=OAR20956.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014382994.1;locus_tag=A8144_08570;product=ATP-dependent DNA helicase RecG;protein_id=OAR20956.1;transl_table=11
LYPH01000028.1	Genbank	pseudogene	27152	27848	.	+	.	ID=gene-A8144_08575;Name=A8144_08575;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08575;pseudo=true
LYPH01000028.1	Protein Homology	CDS	27152	27848	.	+	0	ID=cds-A8144_08575;Parent=gene-A8144_08575;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007171348.1;locus_tag=A8144_08575;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000028.1	Genbank	gene	27886	28734	.	-	.	ID=gene-A8144_08580;Name=dkgA;gbkey=Gene;gene=dkgA;gene_biotype=protein_coding;locus_tag=A8144_08580
LYPH01000028.1	Protein Homology	CDS	27886	28734	.	-	0	ID=cds-OAR20957.1;Parent=gene-A8144_08580;Dbxref=NCBI_GP:OAR20957.1;Name=OAR20957.1;Note=methylglyoxal reductase/beta-keto ester reductase%3B catalyzes the reduction of 2%2C5-diketo-D-gluconic acid to 2-keto-L-gulonic acid%3B also catalyzes the reduction of methylglyoxal%2C ethyl-2-methylacetoacetate and ethyl-acetoacetate;gbkey=CDS;gene=dkgA;inference=EXISTENCE: similar to AA sequence:SwissProt:O69462.1;locus_tag=A8144_08580;product=2%2C5-didehydrogluconate reductase A;protein_id=OAR20957.1;transl_table=11
LYPH01000028.1	Genbank	pseudogene	28736	29455	.	-	.	ID=gene-A8144_08585;Name=A8144_08585;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08585;pseudo=true
LYPH01000028.1	Protein Homology	CDS	28736	29455	.	-	0	ID=cds-A8144_08585;Parent=gene-A8144_08585;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005626513.1;locus_tag=A8144_08585;product=oxidoreductase;pseudo=true;transl_table=11
LYPH01000028.1	Genbank	pseudogene	29627	30671	.	+	.	ID=gene-A8144_08590;Name=A8144_08590;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08590;pseudo=true
LYPH01000028.1	Protein Homology	CDS	29627	30671	.	+	0	ID=cds-A8144_08590;Parent=gene-A8144_08590;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012393556.1;locus_tag=A8144_08590;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000028.1	Genbank	gene	30760	31536	.	+	.	ID=gene-A8144_08595;Name=A8144_08595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08595
LYPH01000028.1	Protein Homology	CDS	30760	31536	.	+	0	ID=cds-OAR20965.1;Parent=gene-A8144_08595;Dbxref=NCBI_GP:OAR20965.1;Name=OAR20965.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020786514.1;locus_tag=A8144_08595;product=hypothetical protein;protein_id=OAR20965.1;transl_table=11
LYPH01000028.1	Genbank	gene	31545	32189	.	+	.	ID=gene-A8144_08600;Name=A8144_08600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08600
LYPH01000028.1	Protein Homology	CDS	31545	32189	.	+	0	ID=cds-OAR20958.1;Parent=gene-A8144_08600;Dbxref=NCBI_GP:OAR20958.1;Name=OAR20958.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908466.1;locus_tag=A8144_08600;product=hypothetical protein;protein_id=OAR20958.1;transl_table=11
LYPH01000028.1	Genbank	pseudogene	32194	35602	.	+	.	ID=gene-A8144_08605;Name=A8144_08605;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08605;pseudo=true
LYPH01000028.1	Protein Homology	CDS	32194	35602	.	+	0	ID=cds-A8144_08605;Parent=gene-A8144_08605;Note=biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate%3B frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_017206665.1;locus_tag=A8144_08605;product=pyruvate carboxylase;pseudo=true;transl_table=11
LYPH01000028.1	Genbank	gene	35599	36153	.	+	.	ID=gene-A8144_08610;Name=A8144_08610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08610
LYPH01000028.1	Protein Homology	CDS	35599	36153	.	+	0	ID=cds-OAR20959.1;Parent=gene-A8144_08610;Dbxref=NCBI_GP:OAR20959.1;Name=OAR20959.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014380717.1;locus_tag=A8144_08610;product=16S rRNA (guanine(966)-N(2))-methyltransferase RsmD;protein_id=OAR20959.1;transl_table=11
LYPH01000028.1	Genbank	gene	36176	36658	.	+	.	ID=gene-A8144_08615;Name=A8144_08615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08615
LYPH01000028.1	Protein Homology	CDS	36176	36658	.	+	0	ID=cds-OAR20960.1;Parent=gene-A8144_08615;Dbxref=NCBI_GP:OAR20960.1;Name=OAR20960.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q73VL1.1;locus_tag=A8144_08615;product=pantetheine-phosphate adenylyltransferase;protein_id=OAR20960.1;transl_table=11
LYPH01000028.1	Genbank	gene	37202	37450	.	-	.	ID=gene-A8144_08620;Name=A8144_08620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08620
LYPH01000028.1	GeneMarkS+	CDS	37202	37450	.	-	0	ID=cds-OAR20961.1;Parent=gene-A8144_08620;Dbxref=NCBI_GP:OAR20961.1;Name=OAR20961.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08620;product=hypothetical protein;protein_id=OAR20961.1;transl_table=11
##sequence-region LYPH01000029.1 1 36358
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000029.1	Genbank	region	1	36358	.	+	.	ID=LYPH01000029.1:1..36358;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000029.1	Genbank	gene	1755	1955	.	+	.	ID=gene-A8144_08625;Name=A8144_08625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08625
LYPH01000029.1	GeneMarkS+	CDS	1755	1955	.	+	0	ID=cds-OAR20911.1;Parent=gene-A8144_08625;Dbxref=NCBI_GP:OAR20911.1;Name=OAR20911.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08625;product=hypothetical protein;protein_id=OAR20911.1;transl_table=11
LYPH01000029.1	Genbank	gene	2346	3161	.	-	.	ID=gene-A8144_08630;Name=A8144_08630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08630
LYPH01000029.1	Protein Homology	CDS	2346	3161	.	-	0	ID=cds-OAR20938.1;Parent=gene-A8144_08630;Dbxref=NCBI_GP:OAR20938.1;Name=OAR20938.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907805.1;locus_tag=A8144_08630;product=hypothetical protein;protein_id=OAR20938.1;transl_table=11
LYPH01000029.1	Genbank	gene	3624	4643	.	+	.	ID=gene-A8144_08635;Name=A8144_08635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08635
LYPH01000029.1	Protein Homology	CDS	3624	4643	.	+	0	ID=cds-OAR20912.1;Parent=gene-A8144_08635;Dbxref=NCBI_GP:OAR20912.1;Name=OAR20912.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014385248.1;locus_tag=A8144_08635;product=type I glyceraldehyde-3-phosphate dehydrogenase;protein_id=OAR20912.1;transl_table=11
LYPH01000029.1	Genbank	gene	4646	5896	.	+	.	ID=gene-A8144_08640;Name=pgk;gbkey=Gene;gene=pgk;gene_biotype=protein_coding;locus_tag=A8144_08640
LYPH01000029.1	Protein Homology	CDS	4646	5896	.	+	0	ID=cds-OAR20913.1;Parent=gene-A8144_08640;Dbxref=NCBI_GP:OAR20913.1;Name=OAR20913.1;Note=Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway;gbkey=CDS;gene=pgk;inference=EXISTENCE: similar to AA sequence:SwissProt:P46712.1;locus_tag=A8144_08640;product=phosphoglycerate kinase;protein_id=OAR20913.1;transl_table=11
LYPH01000029.1	Genbank	gene	5893	6678	.	+	.	ID=gene-A8144_08645;Name=A8144_08645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08645
LYPH01000029.1	Protein Homology	CDS	5893	6678	.	+	0	ID=cds-OAR20914.1;Parent=gene-A8144_08645;Dbxref=NCBI_GP:OAR20914.1;Name=OAR20914.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014213548.1;locus_tag=A8144_08645;product=triose-phosphate isomerase;protein_id=OAR20914.1;transl_table=11
LYPH01000029.1	Genbank	gene	6662	6937	.	+	.	ID=gene-A8144_08650;Name=A8144_08650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08650
LYPH01000029.1	Protein Homology	CDS	6662	6937	.	+	0	ID=cds-OAR20915.1;Parent=gene-A8144_08650;Dbxref=NCBI_GP:OAR20915.1;Name=OAR20915.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907809.1;locus_tag=A8144_08650;product=hypothetical protein;protein_id=OAR20915.1;transl_table=11
LYPH01000029.1	Genbank	gene	6934	7251	.	+	.	ID=gene-A8144_08655;Name=A8144_08655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08655
LYPH01000029.1	Protein Homology	CDS	6934	7251	.	+	0	ID=cds-OAR20939.1;Parent=gene-A8144_08655;Dbxref=NCBI_GP:OAR20939.1;Name=OAR20939.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907810.1;locus_tag=A8144_08655;product=hypothetical protein;protein_id=OAR20939.1;transl_table=11
LYPH01000029.1	Genbank	gene	7409	7627	.	+	.	ID=gene-A8144_08660;Name=A8144_08660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08660
LYPH01000029.1	Protein Homology	CDS	7409	7627	.	+	0	ID=cds-OAR20916.1;Parent=gene-A8144_08660;Dbxref=NCBI_GP:OAR20916.1;Name=OAR20916.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907811.1;locus_tag=A8144_08660;product=hypothetical protein;protein_id=OAR20916.1;transl_table=11
LYPH01000029.1	Genbank	gene	8443	8673	.	+	.	ID=gene-A8144_08665;Name=A8144_08665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08665
LYPH01000029.1	Protein Homology	CDS	8443	8673	.	+	0	ID=cds-OAR20917.1;Parent=gene-A8144_08665;Dbxref=NCBI_GP:OAR20917.1;Name=OAR20917.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907812.1;locus_tag=A8144_08665;product=hypothetical protein;protein_id=OAR20917.1;transl_table=11
LYPH01000029.1	Genbank	gene	8685	8918	.	+	.	ID=gene-A8144_08670;Name=A8144_08670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08670
LYPH01000029.1	Protein Homology	CDS	8685	8918	.	+	0	ID=cds-OAR20918.1;Parent=gene-A8144_08670;Dbxref=NCBI_GP:OAR20918.1;Name=OAR20918.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P66792.1;locus_tag=A8144_08670;product=preprotein translocase subunit SecG;protein_id=OAR20918.1;transl_table=11
LYPH01000029.1	Genbank	gene	8949	11753	.	+	.	ID=gene-A8144_08675;Name=A8144_08675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08675
LYPH01000029.1	Protein Homology	CDS	8949	11753	.	+	0	ID=cds-OAR20919.1;Parent=gene-A8144_08675;Dbxref=NCBI_GP:OAR20919.1;Name=OAR20919.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019694866.1;locus_tag=A8144_08675;product=phosphoenolpyruvate carboxylase;protein_id=OAR20919.1;transl_table=11
LYPH01000029.1	Genbank	gene	11977	12720	.	-	.	ID=gene-A8144_08680;Name=A8144_08680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08680
LYPH01000029.1	Protein Homology	CDS	11977	12720	.	-	0	ID=cds-OAR20920.1;Parent=gene-A8144_08680;Dbxref=NCBI_GP:OAR20920.1;Name=OAR20920.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49700.1;locus_tag=A8144_08680;product=6-phosphogluconolactonase;protein_id=OAR20920.1;transl_table=11
LYPH01000029.1	Genbank	gene	12736	13533	.	-	.	ID=gene-A8144_08685;Name=A8144_08685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08685
LYPH01000029.1	Protein Homology	CDS	12736	13533	.	-	0	ID=cds-OAR20921.1;Parent=gene-A8144_08685;Dbxref=NCBI_GP:OAR20921.1;Name=OAR20921.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907816.1;locus_tag=A8144_08685;product=glucose-6-phosphate dehydrogenase assembly protein OpcA;protein_id=OAR20921.1;transl_table=11
LYPH01000029.1	Genbank	pseudogene	13707	15199	.	-	.	ID=gene-A8144_08690;Name=A8144_08690;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08690;pseudo=true
LYPH01000029.1	Protein Homology	CDS	13707	15199	.	-	0	ID=cds-A8144_08690;Parent=gene-A8144_08690;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005068722.1;locus_tag=A8144_08690;product=glucose-6-phosphate dehydrogenase;pseudo=true;transl_table=11
LYPH01000029.1	Genbank	gene	15196	16323	.	-	.	ID=gene-A8144_08695;Name=A8144_08695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08695
LYPH01000029.1	Protein Homology	CDS	15196	16323	.	-	0	ID=cds-OAR20922.1;Parent=gene-A8144_08695;Dbxref=NCBI_GP:OAR20922.1;Name=OAR20922.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q741B5.1;locus_tag=A8144_08695;product=transaldolase;protein_id=OAR20922.1;transl_table=11
LYPH01000029.1	Genbank	gene	16340	18439	.	-	.	ID=gene-A8144_08700;Name=A8144_08700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08700
LYPH01000029.1	Protein Homology	CDS	16340	18439	.	-	0	ID=cds-OAR20923.1;Parent=gene-A8144_08700;Dbxref=NCBI_GP:OAR20923.1;Name=OAR20923.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014380456.1;locus_tag=A8144_08700;product=transketolase;protein_id=OAR20923.1;transl_table=11
LYPH01000029.1	Genbank	gene	18702	19604	.	+	.	ID=gene-A8144_08705;Name=A8144_08705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08705
LYPH01000029.1	Protein Homology	CDS	18702	19604	.	+	0	ID=cds-OAR20924.1;Parent=gene-A8144_08705;Dbxref=NCBI_GP:OAR20924.1;Name=OAR20924.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009977580.1;locus_tag=A8144_08705;product=protoheme IX farnesyltransferase;protein_id=OAR20924.1;transl_table=11
LYPH01000029.1	Genbank	pseudogene	19633	20545	.	-	.	ID=gene-A8144_08710;Name=A8144_08710;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08710;pseudo=true
LYPH01000029.1	Protein Homology	CDS	19633	20545	.	-	0	ID=cds-A8144_08710;Parent=gene-A8144_08710;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014380454.1;locus_tag=A8144_08710;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000029.1	Genbank	pseudogene	20567	21390	.	+	.	ID=gene-A8144_08715;Name=A8144_08715;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08715;pseudo=true
LYPH01000029.1	Protein Homology	CDS	20567	21390	.	+	0	ID=cds-A8144_08715;Parent=gene-A8144_08715;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011739942.1;locus_tag=A8144_08715;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000029.1	Genbank	gene	21403	22338	.	-	.	ID=gene-A8144_08720;Name=A8144_08720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08720
LYPH01000029.1	Protein Homology	CDS	21403	22338	.	-	0	ID=cds-OAR20940.1;Parent=gene-A8144_08720;Dbxref=NCBI_GP:OAR20940.1;Name=OAR20940.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907820.1;locus_tag=A8144_08720;product=hypothetical protein;protein_id=OAR20940.1;transl_table=11
LYPH01000029.1	Genbank	gene	22593	22835	.	+	.	ID=gene-A8144_08725;Name=A8144_08725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08725
LYPH01000029.1	Protein Homology	CDS	22593	22835	.	+	0	ID=cds-OAR20925.1;Parent=gene-A8144_08725;Dbxref=NCBI_GP:OAR20925.1;Name=OAR20925.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907821.1;locus_tag=A8144_08725;product=hypothetical protein;protein_id=OAR20925.1;transl_table=11
LYPH01000029.1	Genbank	gene	22969	23766	.	-	.	ID=gene-A8144_08730;Name=A8144_08730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08730
LYPH01000029.1	Protein Homology	CDS	22969	23766	.	-	0	ID=cds-OAR20926.1;Parent=gene-A8144_08730;Dbxref=NCBI_GP:OAR20926.1;Name=OAR20926.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907822.1;locus_tag=A8144_08730;product=multidrug ABC transporter permease;protein_id=OAR20926.1;transl_table=11
LYPH01000029.1	Genbank	gene	23766	24713	.	-	.	ID=gene-A8144_08735;Name=A8144_08735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08735
LYPH01000029.1	Protein Homology	CDS	23766	24713	.	-	0	ID=cds-OAR20927.1;Parent=gene-A8144_08735;Dbxref=NCBI_GP:OAR20927.1;Name=OAR20927.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907823.1;locus_tag=A8144_08735;product=spermidine/putrescine ABC transporter ATP-binding protein;protein_id=OAR20927.1;transl_table=11
LYPH01000029.1	Genbank	gene	24710	26491	.	-	.	ID=gene-A8144_08740;Name=A8144_08740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08740
LYPH01000029.1	Protein Homology	CDS	24710	26491	.	-	0	ID=cds-OAR20928.1;Parent=gene-A8144_08740;Dbxref=NCBI_GP:OAR20928.1;Name=OAR20928.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907824.1;locus_tag=A8144_08740;product=hypothetical protein;protein_id=OAR20928.1;transl_table=11
LYPH01000029.1	Genbank	gene	26607	27371	.	+	.	ID=gene-A8144_08745;Name=A8144_08745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08745
LYPH01000029.1	Protein Homology	CDS	26607	27371	.	+	0	ID=cds-OAR20929.1;Parent=gene-A8144_08745;Dbxref=NCBI_GP:OAR20929.1;Name=OAR20929.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907825.1;locus_tag=A8144_08745;product=DNA-binding protein;protein_id=OAR20929.1;transl_table=11
LYPH01000029.1	Genbank	gene	27423	30032	.	+	.	ID=gene-A8144_08750;Name=A8144_08750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08750
LYPH01000029.1	Protein Homology	CDS	27423	30032	.	+	0	ID=cds-OAR20930.1;Parent=gene-A8144_08750;Dbxref=NCBI_GP:OAR20930.1;Name=OAR20930.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49689.2;locus_tag=A8144_08750;product=Fe-S cluster assembly protein SufB;protein_id=OAR20930.1;transl_table=11
LYPH01000029.1	Genbank	gene	30029	31207	.	+	.	ID=gene-A8144_08755;Name=A8144_08755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08755
LYPH01000029.1	Protein Homology	CDS	30029	31207	.	+	0	ID=cds-OAR20931.1;Parent=gene-A8144_08755;Dbxref=NCBI_GP:OAR20931.1;Name=OAR20931.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49682.1;locus_tag=A8144_08755;product=Fe-S cluster assembly protein SufD;protein_id=OAR20931.1;transl_table=11
LYPH01000029.1	Genbank	gene	31204	31986	.	+	.	ID=gene-A8144_08760;Name=A8144_08760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08760
LYPH01000029.1	Protein Homology	CDS	31204	31986	.	+	0	ID=cds-OAR20932.1;Parent=gene-A8144_08760;Dbxref=NCBI_GP:OAR20932.1;Name=OAR20932.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907828.1;locus_tag=A8144_08760;product=Fe-S cluster assembly ATPase SufC;protein_id=OAR20932.1;transl_table=11
LYPH01000029.1	Genbank	gene	31989	33245	.	+	.	ID=gene-A8144_08765;Name=A8144_08765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08765
LYPH01000029.1	Protein Homology	CDS	31989	33245	.	+	0	ID=cds-OAR20933.1;Parent=gene-A8144_08765;Dbxref=NCBI_GP:OAR20933.1;Name=OAR20933.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49690.1;locus_tag=A8144_08765;product=cysteine desulfurase;protein_id=OAR20933.1;transl_table=11
LYPH01000029.1	Genbank	gene	33242	33739	.	+	.	ID=gene-A8144_08770;Name=A8144_08770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08770
LYPH01000029.1	Protein Homology	CDS	33242	33739	.	+	0	ID=cds-OAR20934.1;Parent=gene-A8144_08770;Dbxref=NCBI_GP:OAR20934.1;Name=OAR20934.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907830.1;locus_tag=A8144_08770;product=SUF system NifU family Fe-S cluster assembly protein;protein_id=OAR20934.1;transl_table=11
LYPH01000029.1	Genbank	gene	33714	34061	.	+	.	ID=gene-A8144_08775;Name=A8144_08775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08775
LYPH01000029.1	Protein Homology	CDS	33714	34061	.	+	0	ID=cds-OAR20935.1;Parent=gene-A8144_08775;Dbxref=NCBI_GP:OAR20935.1;Name=OAR20935.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_006244769.1;locus_tag=A8144_08775;product=metal-sulfur cluster biosynthetic enzyme;protein_id=OAR20935.1;transl_table=11
LYPH01000029.1	Genbank	gene	35170	35484	.	+	.	ID=gene-A8144_08780;Name=A8144_08780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08780
LYPH01000029.1	GeneMarkS+	CDS	35170	35484	.	+	0	ID=cds-OAR20936.1;Parent=gene-A8144_08780;Dbxref=NCBI_GP:OAR20936.1;Name=OAR20936.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08780;product=hypothetical protein;protein_id=OAR20936.1;transl_table=11
LYPH01000029.1	Genbank	gene	35468	35719	.	-	.	ID=gene-A8144_08785;Name=A8144_08785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08785
LYPH01000029.1	GeneMarkS+	CDS	35468	35719	.	-	0	ID=cds-OAR20937.1;Parent=gene-A8144_08785;Dbxref=NCBI_GP:OAR20937.1;Name=OAR20937.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08785;product=hypothetical protein;protein_id=OAR20937.1;transl_table=11
##sequence-region LYPH01000030.1 1 36125
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000030.1	Genbank	region	1	36125	.	+	.	ID=LYPH01000030.1:1..36125;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000030.1	Genbank	gene	120	1121	.	-	.	ID=gene-A8144_08790;Name=A8144_08790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08790
LYPH01000030.1	Protein Homology	CDS	120	1121	.	-	0	ID=cds-OAR20907.1;Parent=gene-A8144_08790;Dbxref=NCBI_GP:OAR20907.1;Name=OAR20907.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019930114.1;locus_tag=A8144_08790;product=ketol-acid reductoisomerase;protein_id=OAR20907.1;transl_table=11
LYPH01000030.1	Genbank	gene	1174	1683	.	-	.	ID=gene-A8144_08795;Name=A8144_08795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08795
LYPH01000030.1	Protein Homology	CDS	1174	1683	.	-	0	ID=cds-OAR20883.1;Parent=gene-A8144_08795;Dbxref=NCBI_GP:OAR20883.1;Name=OAR20883.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33113.1;locus_tag=A8144_08795;product=acetolactate synthase small subunit;protein_id=OAR20883.1;transl_table=11
LYPH01000030.1	Genbank	gene	1735	3612	.	-	.	ID=gene-A8144_08800;Name=A8144_08800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08800
LYPH01000030.1	Protein Homology	CDS	1735	3612	.	-	0	ID=cds-OAR20884.1;Parent=gene-A8144_08800;Dbxref=NCBI_GP:OAR20884.1;Name=OAR20884.1;Note=acetolactate synthase large subunit%3B catalyzes the formation of 2-acetolactate from pyruvate;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33112.1;locus_tag=A8144_08800;product=acetolactate synthase large subunit;protein_id=OAR20884.1;transl_table=11
LYPH01000030.1	Genbank	gene	4384	5217	.	-	.	ID=gene-A8144_08805;Name=A8144_08805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08805
LYPH01000030.1	Protein Homology	CDS	4384	5217	.	-	0	ID=cds-OAR20885.1;Parent=gene-A8144_08805;Dbxref=NCBI_GP:OAR20885.1;Name=OAR20885.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908488.1;locus_tag=A8144_08805;product=hypothetical protein;protein_id=OAR20885.1;transl_table=11
LYPH01000030.1	Genbank	gene	5460	6578	.	+	.	ID=gene-A8144_08810;Name=A8144_08810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08810
LYPH01000030.1	Protein Homology	CDS	5460	6578	.	+	0	ID=cds-OAR20886.1;Parent=gene-A8144_08810;Dbxref=NCBI_GP:OAR20886.1;Name=OAR20886.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908489.1;locus_tag=A8144_08810;product=hypothetical protein;protein_id=OAR20886.1;transl_table=11
LYPH01000030.1	Genbank	gene	7520	9049	.	-	.	ID=gene-A8144_08815;Name=A8144_08815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08815
LYPH01000030.1	Protein Homology	CDS	7520	9049	.	-	0	ID=cds-OAR20887.1;Parent=gene-A8144_08815;Dbxref=NCBI_GP:OAR20887.1;Name=OAR20887.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015291120.1;locus_tag=A8144_08815;product=aspartyl/glutamyl-tRNA amidotransferase subunit B;protein_id=OAR20887.1;transl_table=11
LYPH01000030.1	Genbank	gene	9398	10429	.	-	.	ID=gene-A8144_08820;Name=A8144_08820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08820
LYPH01000030.1	Protein Homology	CDS	9398	10429	.	-	0	ID=cds-OAR20888.1;Parent=gene-A8144_08820;Dbxref=NCBI_GP:OAR20888.1;Name=OAR20888.1;Note=catalyzes the formation of D-fructose 1%2C6-bisphosphate from D-fructose 6-phosphate in glycolysis;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_006245700.1;locus_tag=A8144_08820;product=6-phosphofructokinase;protein_id=OAR20888.1;transl_table=11
LYPH01000030.1	Genbank	gene	10517	12010	.	-	.	ID=gene-A8144_08825;Name=A8144_08825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08825
LYPH01000030.1	Protein Homology	CDS	10517	12010	.	-	0	ID=cds-OAR20889.1;Parent=gene-A8144_08825;Dbxref=NCBI_GP:OAR20889.1;Name=OAR20889.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33105.1;locus_tag=A8144_08825;product=aspartyl/glutamyl-tRNA amidotransferase subunit A;protein_id=OAR20889.1;transl_table=11
LYPH01000030.1	Genbank	gene	12007	12306	.	-	.	ID=gene-A8144_08830;Name=A8144_08830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08830
LYPH01000030.1	Protein Homology	CDS	12007	12306	.	-	0	ID=cds-OAR20890.1;Parent=gene-A8144_08830;Dbxref=NCBI_GP:OAR20890.1;Name=OAR20890.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:A0PPX3.1;locus_tag=A8144_08830;product=asparaginyl/glutamyl-tRNA amidotransferase subunit C;protein_id=OAR20890.1;transl_table=11
LYPH01000030.1	Genbank	gene	12476	13141	.	+	.	ID=gene-A8144_08835;Name=A8144_08835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08835
LYPH01000030.1	Protein Homology	CDS	12476	13141	.	+	0	ID=cds-OAR20908.1;Parent=gene-A8144_08835;Dbxref=NCBI_GP:OAR20908.1;Name=OAR20908.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003415259.1;locus_tag=A8144_08835;product=amino acid-binding protein;protein_id=OAR20908.1;transl_table=11
LYPH01000030.1	Genbank	gene	13144	15228	.	-	.	ID=gene-A8144_08840;Name=A8144_08840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08840
LYPH01000030.1	Protein Homology	CDS	13144	15228	.	-	0	ID=cds-OAR20891.1;Parent=gene-A8144_08840;Dbxref=NCBI_GP:OAR20891.1;Name=OAR20891.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33102.1;locus_tag=A8144_08840;product=DNA ligase (NAD(+)) LigA;protein_id=OAR20891.1;transl_table=11
LYPH01000030.1	Genbank	gene	15287	16300	.	-	.	ID=gene-A8144_08845;Name=A8144_08845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08845
LYPH01000030.1	Protein Homology	CDS	15287	16300	.	-	0	ID=cds-OAR20892.1;Parent=gene-A8144_08845;Dbxref=NCBI_GP:OAR20892.1;Name=OAR20892.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908496.1;locus_tag=A8144_08845;product=methionine synthase;protein_id=OAR20892.1;transl_table=11
LYPH01000030.1	Genbank	gene	17216	18292	.	-	.	ID=gene-A8144_08850;Name=A8144_08850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08850
LYPH01000030.1	Protein Homology	CDS	17216	18292	.	-	0	ID=cds-OAR20893.1;Parent=gene-A8144_08850;Dbxref=NCBI_GP:OAR20893.1;Name=OAR20893.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33099.1;locus_tag=A8144_08850;product=tRNA 2-thiouridine(34) synthase MnmA;protein_id=OAR20893.1;transl_table=11
LYPH01000030.1	Genbank	gene	18289	19479	.	-	.	ID=gene-A8144_08855;Name=A8144_08855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08855
LYPH01000030.1	Protein Homology	CDS	18289	19479	.	-	0	ID=cds-OAR20909.1;Parent=gene-A8144_08855;Dbxref=NCBI_GP:OAR20909.1;Name=OAR20909.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003874982.1;locus_tag=A8144_08855;product=cysteine desulfurase;protein_id=OAR20909.1;transl_table=11
LYPH01000030.1	Genbank	pseudogene	20378	21245	.	-	.	ID=gene-A8144_08860;Name=A8144_08860;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08860;pseudo=true
LYPH01000030.1	Protein Homology	CDS	20378	21245	.	-	0	ID=cds-A8144_08860;Parent=gene-A8144_08860;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008259080.1;locus_tag=A8144_08860;product=phosphohistidine phosphatase;pseudo=true;transl_table=11
LYPH01000030.1	Genbank	gene	21475	22431	.	-	.	ID=gene-A8144_08865;Name=A8144_08865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08865
LYPH01000030.1	Protein Homology	CDS	21475	22431	.	-	0	ID=cds-OAR20894.1;Parent=gene-A8144_08865;Dbxref=NCBI_GP:OAR20894.1;Name=OAR20894.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009955847.1;locus_tag=A8144_08865;product=electron transfer flavoprotein subunit alpha;protein_id=OAR20894.1;transl_table=11
LYPH01000030.1	Genbank	gene	22480	23280	.	-	.	ID=gene-A8144_08870;Name=A8144_08870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08870
LYPH01000030.1	Protein Homology	CDS	22480	23280	.	-	0	ID=cds-OAR20895.1;Parent=gene-A8144_08870;Dbxref=NCBI_GP:OAR20895.1;Name=OAR20895.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014214156.1;locus_tag=A8144_08870;product=electron transfer flavoprotein subunit beta;protein_id=OAR20895.1;transl_table=11
LYPH01000030.1	Genbank	gene	23508	24350	.	+	.	ID=gene-A8144_08875;Name=A8144_08875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08875
LYPH01000030.1	Protein Homology	CDS	23508	24350	.	+	0	ID=cds-OAR20896.1;Parent=gene-A8144_08875;Dbxref=NCBI_GP:OAR20896.1;Name=OAR20896.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908501.1;locus_tag=A8144_08875;product=SAM-dependent methyltransferase;protein_id=OAR20896.1;transl_table=11
LYPH01000030.1	Genbank	gene	24347	25915	.	+	.	ID=gene-A8144_08880;Name=A8144_08880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08880
LYPH01000030.1	Protein Homology	CDS	24347	25915	.	+	0	ID=cds-OAR20897.1;Parent=gene-A8144_08880;Dbxref=NCBI_GP:OAR20897.1;Name=OAR20897.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908502.1;locus_tag=A8144_08880;product=1%2C4-alpha-glucan branching protein;protein_id=OAR20897.1;transl_table=11
LYPH01000030.1	Genbank	gene	26013	27257	.	+	.	ID=gene-A8144_08885;Name=A8144_08885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08885
LYPH01000030.1	Protein Homology	CDS	26013	27257	.	+	0	ID=cds-OAR20898.1;Parent=gene-A8144_08885;Dbxref=NCBI_GP:OAR20898.1;Name=OAR20898.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014712115.1;locus_tag=A8144_08885;product=glycogen synthase;protein_id=OAR20898.1;transl_table=11
LYPH01000030.1	Genbank	gene	27557	27931	.	+	.	ID=gene-A8144_08890;Name=A8144_08890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08890
LYPH01000030.1	GeneMarkS+	CDS	27557	27931	.	+	0	ID=cds-OAR20899.1;Parent=gene-A8144_08890;Dbxref=NCBI_GP:OAR20899.1;Name=OAR20899.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08890;product=hypothetical protein;protein_id=OAR20899.1;transl_table=11
LYPH01000030.1	Genbank	gene	28027	28365	.	-	.	ID=gene-A8144_08895;Name=A8144_08895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08895
LYPH01000030.1	GeneMarkS+	CDS	28027	28365	.	-	0	ID=cds-OAR20900.1;Parent=gene-A8144_08895;Dbxref=NCBI_GP:OAR20900.1;Name=OAR20900.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08895;product=hypothetical protein;protein_id=OAR20900.1;transl_table=11
LYPH01000030.1	Genbank	gene	28753	29046	.	-	.	ID=gene-A8144_08900;Name=A8144_08900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08900
LYPH01000030.1	Protein Homology	CDS	28753	29046	.	-	0	ID=cds-OAR20901.1;Parent=gene-A8144_08900;Dbxref=NCBI_GP:OAR20901.1;Name=OAR20901.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908504.1;locus_tag=A8144_08900;product=hypothetical protein;protein_id=OAR20901.1;transl_table=11
LYPH01000030.1	Genbank	gene	29138	29341	.	-	.	ID=gene-A8144_08905;Name=A8144_08905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08905
LYPH01000030.1	GeneMarkS+	CDS	29138	29341	.	-	0	ID=cds-OAR20902.1;Parent=gene-A8144_08905;Dbxref=NCBI_GP:OAR20902.1;Name=OAR20902.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08905;product=hypothetical protein;protein_id=OAR20902.1;transl_table=11
LYPH01000030.1	Genbank	gene	29899	30096	.	-	.	ID=gene-A8144_08910;Name=A8144_08910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08910
LYPH01000030.1	GeneMarkS+	CDS	29899	30096	.	-	0	ID=cds-OAR20903.1;Parent=gene-A8144_08910;Dbxref=NCBI_GP:OAR20903.1;Name=OAR20903.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08910;product=hypothetical protein;protein_id=OAR20903.1;transl_table=11
LYPH01000030.1	Genbank	pseudogene	30662	31585	.	+	.	ID=gene-A8144_08915;Name=A8144_08915;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08915;pseudo=true
LYPH01000030.1	Protein Homology	CDS	30662	31585	.	+	0	ID=cds-A8144_08915;Parent=gene-A8144_08915;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014213942.1;locus_tag=A8144_08915;product=fumarylacetoacetase;pseudo=true;transl_table=11
LYPH01000030.1	Genbank	gene	32324	33061	.	-	.	ID=gene-A8144_08920;Name=A8144_08920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08920
LYPH01000030.1	Protein Homology	CDS	32324	33061	.	-	0	ID=cds-OAR20904.1;Parent=gene-A8144_08920;Dbxref=NCBI_GP:OAR20904.1;Name=OAR20904.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908505.1;locus_tag=A8144_08920;product=acetyltransferase;protein_id=OAR20904.1;transl_table=11
LYPH01000030.1	Genbank	gene	33501	34595	.	+	.	ID=gene-A8144_08925;Name=A8144_08925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08925
LYPH01000030.1	Protein Homology	CDS	33501	34595	.	+	0	ID=cds-OAR20910.1;Parent=gene-A8144_08925;Dbxref=NCBI_GP:OAR20910.1;Name=OAR20910.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908506.1;locus_tag=A8144_08925;product=pyrrolo-quinoline quinone;protein_id=OAR20910.1;transl_table=11
LYPH01000030.1	Genbank	pseudogene	34596	35297	.	-	.	ID=gene-A8144_08930;Name=A8144_08930;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08930;pseudo=true
LYPH01000030.1	Protein Homology	CDS	34596	35297	.	-	0	ID=cds-A8144_08930;Parent=gene-A8144_08930;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003874951.1;locus_tag=A8144_08930;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000030.1	Genbank	gene	35376	35600	.	-	.	ID=gene-A8144_08935;Name=A8144_08935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08935
LYPH01000030.1	GeneMarkS+	CDS	35376	35600	.	-	0	ID=cds-OAR20905.1;Parent=gene-A8144_08935;Dbxref=NCBI_GP:OAR20905.1;Name=OAR20905.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08935;product=hypothetical protein;protein_id=OAR20905.1;transl_table=11
LYPH01000030.1	Genbank	gene	35798	36061	.	+	.	ID=gene-A8144_08940;Name=A8144_08940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08940
LYPH01000030.1	GeneMarkS+	CDS	35798	36061	.	+	0	ID=cds-OAR20906.1;Parent=gene-A8144_08940;Dbxref=NCBI_GP:OAR20906.1;Name=OAR20906.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08940;product=hypothetical protein;protein_id=OAR20906.1;transl_table=11
##sequence-region LYPH01000031.1 1 35839
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000031.1	Genbank	region	1	35839	.	+	.	ID=LYPH01000031.1:1..35839;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000031.1	Genbank	gene	1804	2148	.	-	.	ID=gene-A8144_08945;Name=A8144_08945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08945
LYPH01000031.1	Protein Homology	CDS	1804	2148	.	-	0	ID=cds-OAR20857.1;Parent=gene-A8144_08945;Dbxref=NCBI_GP:OAR20857.1;Name=OAR20857.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908612.1;locus_tag=A8144_08945;product=hypothetical protein;protein_id=OAR20857.1;transl_table=11
LYPH01000031.1	Genbank	gene	2739	3080	.	+	.	ID=gene-A8144_08950;Name=A8144_08950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08950
LYPH01000031.1	GeneMarkS+	CDS	2739	3080	.	+	0	ID=cds-OAR20858.1;Parent=gene-A8144_08950;Dbxref=NCBI_GP:OAR20858.1;Name=OAR20858.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_08950;product=hypothetical protein;protein_id=OAR20858.1;transl_table=11
LYPH01000031.1	Genbank	pseudogene	3511	4223	.	-	.	ID=gene-A8144_08955;Name=A8144_08955;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_08955;pseudo=true
LYPH01000031.1	Protein Homology	CDS	3511	4223	.	-	0	ID=cds-A8144_08955;Parent=gene-A8144_08955;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009979156.1;locus_tag=A8144_08955;product=enoyl-CoA hydratase;pseudo=true;transl_table=11
LYPH01000031.1	Genbank	gene	4379	5095	.	-	.	ID=gene-A8144_08960;Name=A8144_08960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08960
LYPH01000031.1	Protein Homology	CDS	4379	5095	.	-	0	ID=cds-OAR20859.1;Parent=gene-A8144_08960;Dbxref=NCBI_GP:OAR20859.1;Name=OAR20859.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908611.1;locus_tag=A8144_08960;product=MBL fold metallo-hydrolase;protein_id=OAR20859.1;transl_table=11
LYPH01000031.1	Genbank	gene	5248	5463	.	+	.	ID=gene-A8144_08965;Name=A8144_08965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08965
LYPH01000031.1	Protein Homology	CDS	5248	5463	.	+	0	ID=cds-OAR20860.1;Parent=gene-A8144_08965;Dbxref=NCBI_GP:OAR20860.1;Name=OAR20860.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908610.1;locus_tag=A8144_08965;product=hypothetical protein;protein_id=OAR20860.1;transl_table=11
LYPH01000031.1	Genbank	gene	5617	5689	.	+	.	ID=gene-A8144_08970;Name=A8144_08970;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_08970
LYPH01000031.1	tRNAscan-SE	tRNA	5617	5689	.	+	.	ID=rna-A8144_08970;Parent=gene-A8144_08970;anticodon=(pos:5650..5652);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_08970;product=tRNA-Thr
LYPH01000031.1	tRNAscan-SE	exon	5617	5689	.	+	.	ID=exon-A8144_08970-1;Parent=rna-A8144_08970;anticodon=(pos:5650..5652);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_08970;product=tRNA-Thr
LYPH01000031.1	Genbank	gene	5743	5819	.	+	.	ID=gene-A8144_08975;Name=A8144_08975;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_08975
LYPH01000031.1	tRNAscan-SE	tRNA	5743	5819	.	+	.	ID=rna-A8144_08975;Parent=gene-A8144_08975;anticodon=(pos:5777..5779);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_08975;product=tRNA-Met
LYPH01000031.1	tRNAscan-SE	exon	5743	5819	.	+	.	ID=exon-A8144_08975-1;Parent=rna-A8144_08975;anticodon=(pos:5777..5779);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_08975;product=tRNA-Met
LYPH01000031.1	Genbank	gene	5863	6030	.	+	.	ID=gene-A8144_08980;Name=A8144_08980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08980
LYPH01000031.1	Protein Homology	CDS	5863	6030	.	+	0	ID=cds-OAR20861.1;Parent=gene-A8144_08980;Dbxref=NCBI_GP:OAR20861.1;Name=OAR20861.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_018598675.1;locus_tag=A8144_08980;product=50S ribosomal protein L33;protein_id=OAR20861.1;transl_table=11
LYPH01000031.1	Genbank	gene	6077	6556	.	+	.	ID=gene-A8144_08985;Name=A8144_08985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08985
LYPH01000031.1	Protein Homology	CDS	6077	6556	.	+	0	ID=cds-OAR20862.1;Parent=gene-A8144_08985;Dbxref=NCBI_GP:OAR20862.1;Name=OAR20862.1;Note=functions as a heterodimer along with HadB in fatty acid biosynthesis%3B fatty acid synthase type II%3B FAS-II;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBJ6.1;locus_tag=A8144_08985;product=3-hydroxyacyl-ACP dehydratase;protein_id=OAR20862.1;transl_table=11
LYPH01000031.1	Genbank	gene	6543	6971	.	+	.	ID=gene-A8144_08990;Name=A8144_08990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08990
LYPH01000031.1	Protein Homology	CDS	6543	6971	.	+	0	ID=cds-OAR20863.1;Parent=gene-A8144_08990;Dbxref=NCBI_GP:OAR20863.1;Name=OAR20863.1;Note=functions as a heterodimer along with HadA or HadC in fatty acid biosynthesis%3B fatty acid synthase type II%3B FAS-II;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010950426.1;locus_tag=A8144_08990;product=3-hydroxyacyl-ACP dehydratase;protein_id=OAR20863.1;transl_table=11
LYPH01000031.1	Genbank	gene	6975	7475	.	+	.	ID=gene-A8144_08995;Name=A8144_08995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_08995
LYPH01000031.1	Protein Homology	CDS	6975	7475	.	+	0	ID=cds-OAR20864.1;Parent=gene-A8144_08995;Dbxref=NCBI_GP:OAR20864.1;Name=OAR20864.1;Note=functions as a heterodimer along with HadB in fatty acid biosynthesis%3B fatty acid synthase type II%3B FAS-II;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008260923.1;locus_tag=A8144_08995;product=3-hydroxyacyl-ACP dehydratase;protein_id=OAR20864.1;transl_table=11
LYPH01000031.1	Genbank	gene	7646	7718	.	+	.	ID=gene-A8144_09000;Name=A8144_09000;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_09000
LYPH01000031.1	tRNAscan-SE	tRNA	7646	7718	.	+	.	ID=rna-A8144_09000;Parent=gene-A8144_09000;anticodon=(pos:7679..7681);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_09000;product=tRNA-Trp
LYPH01000031.1	tRNAscan-SE	exon	7646	7718	.	+	.	ID=exon-A8144_09000-1;Parent=rna-A8144_09000;anticodon=(pos:7679..7681);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_09000;product=tRNA-Trp
LYPH01000031.1	Genbank	gene	7811	8251	.	+	.	ID=gene-A8144_09005;Name=A8144_09005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09005
LYPH01000031.1	Protein Homology	CDS	7811	8251	.	+	0	ID=cds-OAR20865.1;Parent=gene-A8144_09005;Dbxref=NCBI_GP:OAR20865.1;Name=OAR20865.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBJ9.1;locus_tag=A8144_09005;product=preprotein translocase subunit SecE;protein_id=OAR20865.1;transl_table=11
LYPH01000031.1	Genbank	gene	8284	9015	.	+	.	ID=gene-A8144_09010;Name=A8144_09010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09010
LYPH01000031.1	Protein Homology	CDS	8284	9015	.	+	0	ID=cds-OAR20866.1;Parent=gene-A8144_09010;Dbxref=NCBI_GP:OAR20866.1;Name=OAR20866.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020788608.1;locus_tag=A8144_09010;product=transcription termination/antitermination protein NusG;protein_id=OAR20866.1;transl_table=11
LYPH01000031.1	Genbank	gene	9043	9471	.	+	.	ID=gene-A8144_09015;Name=A8144_09015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09015
LYPH01000031.1	Protein Homology	CDS	9043	9471	.	+	0	ID=cds-OAR20867.1;Parent=gene-A8144_09015;Dbxref=NCBI_GP:OAR20867.1;Name=OAR20867.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_013827605.1;locus_tag=A8144_09015;product=50S ribosomal protein L11;protein_id=OAR20867.1;transl_table=11
LYPH01000031.1	Genbank	gene	9603	10310	.	+	.	ID=gene-A8144_09020;Name=A8144_09020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09020
LYPH01000031.1	Protein Homology	CDS	9603	10310	.	+	0	ID=cds-OAR20868.1;Parent=gene-A8144_09020;Dbxref=NCBI_GP:OAR20868.1;Name=OAR20868.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908602.1;locus_tag=A8144_09020;product=50S ribosomal protein L1;protein_id=OAR20868.1;transl_table=11
LYPH01000031.1	Genbank	gene	10383	10595	.	-	.	ID=gene-A8144_09025;Name=A8144_09025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09025
LYPH01000031.1	GeneMarkS+	CDS	10383	10595	.	-	0	ID=cds-OAR20869.1;Parent=gene-A8144_09025;Dbxref=NCBI_GP:OAR20869.1;Name=OAR20869.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09025;product=hypothetical protein;protein_id=OAR20869.1;transl_table=11
LYPH01000031.1	Genbank	gene	10764	11066	.	-	.	ID=gene-A8144_09030;Name=A8144_09030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09030
LYPH01000031.1	GeneMarkS+	CDS	10764	11066	.	-	0	ID=cds-OAR20870.1;Parent=gene-A8144_09030;Dbxref=NCBI_GP:OAR20870.1;Name=OAR20870.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09030;product=hypothetical protein;protein_id=OAR20870.1;transl_table=11
LYPH01000031.1	Genbank	gene	12092	12988	.	-	.	ID=gene-A8144_09035;Name=A8144_09035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09035
LYPH01000031.1	Protein Homology	CDS	12092	12988	.	-	0	ID=cds-OAR20882.1;Parent=gene-A8144_09035;Dbxref=NCBI_GP:OAR20882.1;Name=OAR20882.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908601.1;locus_tag=A8144_09035;product=SAM-dependent methyltransferase;protein_id=OAR20882.1;transl_table=11
LYPH01000031.1	Genbank	pseudogene	13101	13968	.	-	.	ID=gene-A8144_09040;Name=A8144_09040;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09040;pseudo=true
LYPH01000031.1	Protein Homology	CDS	13101	13968	.	-	0	ID=cds-A8144_09040;Parent=gene-A8144_09040;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005101093.1;locus_tag=A8144_09040;product=SAM-dependent methyltransferase;pseudo=true;transl_table=11
LYPH01000031.1	Genbank	pseudogene	14145	14958	.	-	.	ID=gene-A8144_09045;Name=A8144_09045;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09045;pseudo=true
LYPH01000031.1	Protein Homology	CDS	14145	14958	.	-	0	ID=cds-A8144_09045;Parent=gene-A8144_09045;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing start;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015626799.1;locus_tag=A8144_09045;product=SAM-dependent methyltransferase;pseudo=true;transl_table=11
LYPH01000031.1	Genbank	gene	15153	16013	.	-	.	ID=gene-A8144_09050;Name=A8144_09050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09050
LYPH01000031.1	Protein Homology	CDS	15153	16013	.	-	0	ID=cds-OAR20871.1;Parent=gene-A8144_09050;Dbxref=NCBI_GP:OAR20871.1;Name=OAR20871.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908600.1;locus_tag=A8144_09050;product=SAM-dependent methyltransferase;protein_id=OAR20871.1;transl_table=11
LYPH01000031.1	Genbank	gene	16071	16985	.	-	.	ID=gene-A8144_09055;Name=A8144_09055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09055
LYPH01000031.1	Protein Homology	CDS	16071	16985	.	-	0	ID=cds-OAR20872.1;Parent=gene-A8144_09055;Dbxref=NCBI_GP:OAR20872.1;Name=OAR20872.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908599.1;locus_tag=A8144_09055;product=hydrolase;protein_id=OAR20872.1;transl_table=11
LYPH01000031.1	Genbank	gene	16985	18331	.	-	.	ID=gene-A8144_09060;Name=A8144_09060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09060
LYPH01000031.1	Protein Homology	CDS	16985	18331	.	-	0	ID=cds-OAR20873.1;Parent=gene-A8144_09060;Dbxref=NCBI_GP:OAR20873.1;Name=OAR20873.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908598.1;locus_tag=A8144_09060;product=hypothetical protein;protein_id=OAR20873.1;transl_table=11
LYPH01000031.1	Genbank	gene	19223	19756	.	+	.	ID=gene-A8144_09065;Name=A8144_09065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09065
LYPH01000031.1	Protein Homology	CDS	19223	19756	.	+	0	ID=cds-OAR20874.1;Parent=gene-A8144_09065;Dbxref=NCBI_GP:OAR20874.1;Name=OAR20874.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBK7.1;locus_tag=A8144_09065;product=50S ribosomal protein L10;protein_id=OAR20874.1;transl_table=11
LYPH01000031.1	Genbank	gene	19792	20184	.	+	.	ID=gene-A8144_09070;Name=A8144_09070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09070
LYPH01000031.1	Protein Homology	CDS	19792	20184	.	+	0	ID=cds-OAR20875.1;Parent=gene-A8144_09070;Dbxref=NCBI_GP:OAR20875.1;Name=OAR20875.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_013988758.1;locus_tag=A8144_09070;product=50S ribosomal protein L7/L12;protein_id=OAR20875.1;transl_table=11
LYPH01000031.1	Genbank	pseudogene	20242	20758	.	-	.	ID=gene-A8144_09075;Name=A8144_09075;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09075;pseudo=true
LYPH01000031.1	Protein Homology	CDS	20242	20758	.	-	0	ID=cds-A8144_09075;Parent=gene-A8144_09075;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014383309.1;locus_tag=A8144_09075;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000031.1	Genbank	pseudogene	20914	22184	.	+	.	ID=gene-A8144_09080;Name=A8144_09080;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09080;pseudo=true
LYPH01000031.1	Protein Homology	CDS	20914	22184	.	+	0	ID=cds-A8144_09080;Parent=gene-A8144_09080;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020788592.1;locus_tag=A8144_09080;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000031.1	Genbank	gene	22349	23359	.	+	.	ID=gene-A8144_09085;Name=A8144_09085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09085
LYPH01000031.1	Protein Homology	CDS	22349	23359	.	+	0	ID=cds-OAR20876.1;Parent=gene-A8144_09085;Dbxref=NCBI_GP:OAR20876.1;Name=OAR20876.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003873552.1;locus_tag=A8144_09085;product=ABC transporter ATP-binding protein;protein_id=OAR20876.1;transl_table=11
LYPH01000031.1	Genbank	gene	23907	27350	.	+	.	ID=gene-A8144_09090;Name=A8144_09090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09090
LYPH01000031.1	Protein Homology	CDS	23907	27350	.	+	0	ID=cds-OAR20877.1;Parent=gene-A8144_09090;Dbxref=NCBI_GP:OAR20877.1;Name=OAR20877.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007767820.1;locus_tag=A8144_09090;product=DNA-directed RNA polymerase subunit beta;protein_id=OAR20877.1;transl_table=11
LYPH01000031.1	Genbank	gene	27399	31349	.	+	.	ID=gene-A8144_09095;Name=A8144_09095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09095
LYPH01000031.1	Protein Homology	CDS	27399	31349	.	+	0	ID=cds-OAR20878.1;Parent=gene-A8144_09095;Dbxref=NCBI_GP:OAR20878.1;Name=OAR20878.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q73SE3.1;locus_tag=A8144_09095;product=DNA-directed RNA polymerase subunit beta';protein_id=OAR20878.1;transl_table=11
LYPH01000031.1	Genbank	gene	31674	32432	.	+	.	ID=gene-A8144_09100;Name=A8144_09100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09100
LYPH01000031.1	Protein Homology	CDS	31674	32432	.	+	0	ID=cds-OAR20879.1;Parent=gene-A8144_09100;Dbxref=NCBI_GP:OAR20879.1;Name=OAR20879.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P30770.1;locus_tag=A8144_09100;product=deoxyribonuclease IV;protein_id=OAR20879.1;transl_table=11
LYPH01000031.1	Genbank	gene	33508	33732	.	+	.	ID=gene-A8144_09105;Name=A8144_09105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09105
LYPH01000031.1	GeneMarkS+	CDS	33508	33732	.	+	0	ID=cds-OAR20880.1;Parent=gene-A8144_09105;Dbxref=NCBI_GP:OAR20880.1;Name=OAR20880.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09105;product=hypothetical protein;protein_id=OAR20880.1;transl_table=11
LYPH01000031.1	Genbank	pseudogene	34063	35033	.	+	.	ID=gene-A8144_09110;Name=A8144_09110;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09110;pseudo=true
LYPH01000031.1	Protein Homology	CDS	34063	35033	.	+	0	ID=cds-A8144_09110;Parent=gene-A8144_09110;Note=Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA%3B frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014209190.1;locus_tag=A8144_09110;product=enoyl-CoA hydratase;pseudo=true;transl_table=11
LYPH01000031.1	Genbank	gene	35355	35603	.	+	.	ID=gene-A8144_09115;Name=A8144_09115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09115
LYPH01000031.1	GeneMarkS+	CDS	35355	35603	.	+	0	ID=cds-OAR20881.1;Parent=gene-A8144_09115;Dbxref=NCBI_GP:OAR20881.1;Name=OAR20881.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09115;product=hypothetical protein;protein_id=OAR20881.1;transl_table=11
##sequence-region LYPH01000032.1 1 35311
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000032.1	Genbank	region	1	35311	.	+	.	ID=LYPH01000032.1:1..35311;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000032.1	Genbank	gene	242	451	.	-	.	ID=gene-A8144_09120;Name=A8144_09120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09120
LYPH01000032.1	GeneMarkS+	CDS	242	451	.	-	0	ID=cds-OAR20836.1;Parent=gene-A8144_09120;Dbxref=NCBI_GP:OAR20836.1;Name=OAR20836.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09120;product=hypothetical protein;protein_id=OAR20836.1;transl_table=11
LYPH01000032.1	Genbank	gene	504	1487	.	-	.	ID=gene-A8144_09125;Name=A8144_09125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09125
LYPH01000032.1	Protein Homology	CDS	504	1487	.	-	0	ID=cds-OAR20837.1;Parent=gene-A8144_09125;Dbxref=NCBI_GP:OAR20837.1;Name=OAR20837.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908507.1;locus_tag=A8144_09125;product=methyltransferase type 11;protein_id=OAR20837.1;transl_table=11
LYPH01000032.1	Genbank	gene	1520	2278	.	-	.	ID=gene-A8144_09130;Name=A8144_09130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09130
LYPH01000032.1	Protein Homology	CDS	1520	2278	.	-	0	ID=cds-OAR20838.1;Parent=gene-A8144_09130;Dbxref=NCBI_GP:OAR20838.1;Name=OAR20838.1;Note=Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908508.1;locus_tag=A8144_09130;product=enoyl-CoA hydratase;protein_id=OAR20838.1;transl_table=11
LYPH01000032.1	Genbank	pseudogene	2349	3153	.	-	.	ID=gene-A8144_09135;Name=A8144_09135;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09135;pseudo=true
LYPH01000032.1	Protein Homology	CDS	2349	3153	.	-	0	ID=cds-A8144_09135;Parent=gene-A8144_09135;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015294127.1;locus_tag=A8144_09135;product=NUDIX hydrolase;pseudo=true;transl_table=11
LYPH01000032.1	Genbank	gene	3150	4028	.	-	.	ID=gene-A8144_09140;Name=A8144_09140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09140
LYPH01000032.1	Protein Homology	CDS	3150	4028	.	-	0	ID=cds-OAR20854.1;Parent=gene-A8144_09140;Dbxref=NCBI_GP:OAR20854.1;Name=OAR20854.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014712129.1;locus_tag=A8144_09140;product=iron ABC transporter ATP-binding protein;protein_id=OAR20854.1;transl_table=11
LYPH01000032.1	Genbank	gene	4077	5312	.	-	.	ID=gene-A8144_09145;Name=A8144_09145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09145
LYPH01000032.1	Protein Homology	CDS	4077	5312	.	-	0	ID=cds-OAR20839.1;Parent=gene-A8144_09145;Dbxref=NCBI_GP:OAR20839.1;Name=OAR20839.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009978312.1;locus_tag=A8144_09145;product=phosphoserine phosphatase SerB;protein_id=OAR20839.1;transl_table=11
LYPH01000032.1	Genbank	gene	5352	7076	.	-	.	ID=gene-A8144_09150;Name=A8144_09150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09150
LYPH01000032.1	Protein Homology	CDS	5352	7076	.	-	0	ID=cds-OAR20855.1;Parent=gene-A8144_09150;Dbxref=NCBI_GP:OAR20855.1;Name=OAR20855.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBQ5.1;locus_tag=A8144_09150;product=cytochrome c oxidase subunit I;protein_id=OAR20855.1;transl_table=11
LYPH01000032.1	Genbank	gene	7291	8385	.	+	.	ID=gene-A8144_09155;Name=A8144_09155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09155
LYPH01000032.1	Protein Homology	CDS	7291	8385	.	+	0	ID=cds-OAR20856.1;Parent=gene-A8144_09155;Dbxref=NCBI_GP:OAR20856.1;Name=OAR20856.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908512.1;locus_tag=A8144_09155;product=Fe3+-citrate ABC transporter substrate-binding protein;protein_id=OAR20856.1;transl_table=11
LYPH01000032.1	Genbank	gene	8693	9733	.	+	.	ID=gene-A8144_09160;Name=A8144_09160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09160
LYPH01000032.1	Protein Homology	CDS	8693	9733	.	+	0	ID=cds-OAR20840.1;Parent=gene-A8144_09160;Dbxref=NCBI_GP:OAR20840.1;Name=OAR20840.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009978314.1;locus_tag=A8144_09160;product=alcohol dehydrogenase;protein_id=OAR20840.1;transl_table=11
LYPH01000032.1	Genbank	gene	11342	12304	.	-	.	ID=gene-A8144_09165;Name=A8144_09165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09165
LYPH01000032.1	Protein Homology	CDS	11342	12304	.	-	0	ID=cds-OAR20841.1;Parent=gene-A8144_09165;Dbxref=NCBI_GP:OAR20841.1;Name=OAR20841.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_006245653.1;locus_tag=A8144_09165;product=class 1b ribonucleoside-diphosphate reductase subunit beta;protein_id=OAR20841.1;transl_table=11
LYPH01000032.1	Genbank	pseudogene	12455	13988	.	-	.	ID=gene-A8144_09170;Name=A8144_09170;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09170;pseudo=true
LYPH01000032.1	Protein Homology	CDS	12455	13988	.	-	0	ID=cds-A8144_09170;Parent=gene-A8144_09170;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003922183.1;locus_tag=A8144_09170;product=4-hydroxyacetophenone monooxygenase;pseudo=true;transl_table=11
LYPH01000032.1	Genbank	gene	14179	15006	.	-	.	ID=gene-A8144_09175;Name=A8144_09175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09175
LYPH01000032.1	Protein Homology	CDS	14179	15006	.	-	0	ID=cds-OAR20842.1;Parent=gene-A8144_09175;Dbxref=NCBI_GP:OAR20842.1;Name=OAR20842.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908515.1;locus_tag=A8144_09175;product=AsnC family transcriptional regulator;protein_id=OAR20842.1;transl_table=11
LYPH01000032.1	Genbank	gene	15053	17218	.	-	.	ID=gene-A8144_09180;Name=A8144_09180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09180
LYPH01000032.1	Protein Homology	CDS	15053	17218	.	-	0	ID=cds-OAR20843.1;Parent=gene-A8144_09180;Dbxref=NCBI_GP:OAR20843.1;Name=OAR20843.1;Note=Catalyzes the rate-limiting step in dNTP synthesis;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014815054.1;locus_tag=A8144_09180;product=ribonucleotide-diphosphate reductase subunit alpha;protein_id=OAR20843.1;transl_table=11
LYPH01000032.1	Genbank	gene	17219	17659	.	-	.	ID=gene-A8144_09185;Name=A8144_09185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09185
LYPH01000032.1	Protein Homology	CDS	17219	17659	.	-	0	ID=cds-OAR20844.1;Parent=gene-A8144_09185;Dbxref=NCBI_GP:OAR20844.1;Name=OAR20844.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003893666.1;locus_tag=A8144_09185;product=ribonucleotide reductase assembly protein NrdI;protein_id=OAR20844.1;transl_table=11
LYPH01000032.1	Genbank	gene	17664	17903	.	-	.	ID=gene-A8144_09190;Name=A8144_09190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09190
LYPH01000032.1	Protein Homology	CDS	17664	17903	.	-	0	ID=cds-OAR20845.1;Parent=gene-A8144_09190;Dbxref=NCBI_GP:OAR20845.1;Name=OAR20845.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019738074.1;locus_tag=A8144_09190;product=NrdH-redoxin;protein_id=OAR20845.1;transl_table=11
LYPH01000032.1	Genbank	gene	18298	18570	.	-	.	ID=gene-A8144_09195;Name=A8144_09195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09195
LYPH01000032.1	GeneMarkS+	CDS	18298	18570	.	-	0	ID=cds-OAR20846.1;Parent=gene-A8144_09195;Dbxref=NCBI_GP:OAR20846.1;Name=OAR20846.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09195;product=hypothetical protein;protein_id=OAR20846.1;transl_table=11
LYPH01000032.1	Genbank	gene	18624	18833	.	-	.	ID=gene-A8144_09200;Name=A8144_09200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09200
LYPH01000032.1	GeneMarkS+	CDS	18624	18833	.	-	0	ID=cds-OAR20847.1;Parent=gene-A8144_09200;Dbxref=NCBI_GP:OAR20847.1;Name=OAR20847.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09200;product=hypothetical protein;protein_id=OAR20847.1;transl_table=11
LYPH01000032.1	Genbank	pseudogene	19048	19643	.	+	.	ID=gene-A8144_09205;Name=A8144_09205;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09205;pseudo=true
LYPH01000032.1	Protein Homology	CDS	19048	19643	.	+	0	ID=cds-A8144_09205;Parent=gene-A8144_09205;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014214204.1;locus_tag=A8144_09205;product=TetR family transcriptional regulator;pseudo=true;transl_table=11
LYPH01000032.1	Genbank	pseudogene	19680	20628	.	+	.	ID=gene-A8144_09210;Name=A8144_09210;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09210;pseudo=true
LYPH01000032.1	Protein Homology	CDS	19680	20628	.	+	0	ID=cds-A8144_09210;Parent=gene-A8144_09210;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009978326.1;locus_tag=A8144_09210;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000032.1	Genbank	gene	20710	21648	.	-	.	ID=gene-A8144_09215;Name=A8144_09215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09215
LYPH01000032.1	Protein Homology	CDS	20710	21648	.	-	0	ID=cds-OAR20848.1;Parent=gene-A8144_09215;Dbxref=NCBI_GP:OAR20848.1;Name=OAR20848.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908519.1;locus_tag=A8144_09215;product=short chain dehydrogenase;protein_id=OAR20848.1;transl_table=11
LYPH01000032.1	Genbank	pseudogene	22486	23904	.	+	.	ID=gene-A8144_09220;Name=A8144_09220;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09220;pseudo=true
LYPH01000032.1	Protein Homology	CDS	22486	23904	.	+	0	ID=cds-A8144_09220;Parent=gene-A8144_09220;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011559208.1;locus_tag=A8144_09220;product=cytochrome P450;pseudo=true;transl_table=11
LYPH01000032.1	Genbank	gene	24397	24609	.	-	.	ID=gene-A8144_09225;Name=A8144_09225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09225
LYPH01000032.1	GeneMarkS+	CDS	24397	24609	.	-	0	ID=cds-OAR20849.1;Parent=gene-A8144_09225;Dbxref=NCBI_GP:OAR20849.1;Name=OAR20849.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09225;product=hypothetical protein;protein_id=OAR20849.1;transl_table=11
LYPH01000032.1	Genbank	gene	25143	25505	.	+	.	ID=gene-A8144_09230;Name=A8144_09230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09230
LYPH01000032.1	GeneMarkS+	CDS	25143	25505	.	+	0	ID=cds-OAR20850.1;Parent=gene-A8144_09230;Dbxref=NCBI_GP:OAR20850.1;Name=OAR20850.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09230;product=hypothetical protein;protein_id=OAR20850.1;transl_table=11
LYPH01000032.1	Genbank	gene	25741	25992	.	-	.	ID=gene-A8144_09235;Name=A8144_09235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09235
LYPH01000032.1	GeneMarkS+	CDS	25741	25992	.	-	0	ID=cds-OAR20851.1;Parent=gene-A8144_09235;Dbxref=NCBI_GP:OAR20851.1;Name=OAR20851.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09235;product=hypothetical protein;protein_id=OAR20851.1;transl_table=11
LYPH01000032.1	Genbank	gene	26280	26471	.	-	.	ID=gene-A8144_09240;Name=A8144_09240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09240
LYPH01000032.1	GeneMarkS+	CDS	26280	26471	.	-	0	ID=cds-OAR20852.1;Parent=gene-A8144_09240;Dbxref=NCBI_GP:OAR20852.1;Name=OAR20852.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09240;product=hypothetical protein;protein_id=OAR20852.1;transl_table=11
LYPH01000032.1	Genbank	pseudogene	27404	29574	.	-	.	ID=gene-A8144_09245;Name=A8144_09245;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09245;pseudo=true
LYPH01000032.1	Protein Homology	CDS	27404	29574	.	-	0	ID=cds-A8144_09245;Parent=gene-A8144_09245;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012393455.1;locus_tag=A8144_09245;product=acyl-CoA dehydrogenase;pseudo=true;transl_table=11
LYPH01000032.1	Genbank	pseudogene	29654	30291	.	-	.	ID=gene-A8144_09250;Name=A8144_09250;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09250;pseudo=true
LYPH01000032.1	Protein Homology	CDS	29654	30291	.	-	0	ID=cds-A8144_09250;Parent=gene-A8144_09250;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003874919.1;locus_tag=A8144_09250;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000032.1	Genbank	gene	32255	32491	.	+	.	ID=gene-A8144_09255;Name=A8144_09255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09255
LYPH01000032.1	GeneMarkS+	CDS	32255	32491	.	+	0	ID=cds-OAR20853.1;Parent=gene-A8144_09255;Dbxref=NCBI_GP:OAR20853.1;Name=OAR20853.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09255;product=hypothetical protein;protein_id=OAR20853.1;transl_table=11
##sequence-region LYPH01000033.1 1 123392
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000033.1	Genbank	region	1	123392	.	+	.	ID=LYPH01000033.1:1..123392;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000033.1	Genbank	gene	340	2256	.	-	.	ID=gene-A8144_01670;Name=A8144_01670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01670
LYPH01000033.1	Protein Homology	CDS	340	2256	.	-	0	ID=cds-OAR20755.1;Parent=gene-A8144_01670;Dbxref=NCBI_GP:OAR20755.1;Name=OAR20755.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908710.1;locus_tag=A8144_01670;product=multidrug ABC transporter ATP-binding protein;protein_id=OAR20755.1;transl_table=11
LYPH01000033.1	Genbank	gene	2350	3996	.	+	.	ID=gene-A8144_01675;Name=A8144_01675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01675
LYPH01000033.1	Protein Homology	CDS	2350	3996	.	+	0	ID=cds-OAR20756.1;Parent=gene-A8144_01675;Dbxref=NCBI_GP:OAR20756.1;Name=OAR20756.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908709.1;locus_tag=A8144_01675;product=hypothetical protein;protein_id=OAR20756.1;transl_table=11
LYPH01000033.1	Genbank	gene	4104	6440	.	+	.	ID=gene-A8144_01680;Name=A8144_01680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01680
LYPH01000033.1	Protein Homology	CDS	4104	6440	.	+	0	ID=cds-OAR20757.1;Parent=gene-A8144_01680;Dbxref=NCBI_GP:OAR20757.1;Name=OAR20757.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007170005.1;locus_tag=A8144_01680;product=accessory Sec system translocase SecA2;protein_id=OAR20757.1;transl_table=11
LYPH01000033.1	Genbank	gene	6502	7122	.	+	.	ID=gene-A8144_01685;Name=A8144_01685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01685
LYPH01000033.1	Protein Homology	CDS	6502	7122	.	+	0	ID=cds-OAR20758.1;Parent=gene-A8144_01685;Dbxref=NCBI_GP:OAR20758.1;Name=OAR20758.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908707.1;locus_tag=A8144_01685;product=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase;protein_id=OAR20758.1;transl_table=11
LYPH01000033.1	Genbank	pseudogene	8116	8461	.	+	.	ID=gene-A8144_01690;Name=A8144_01690;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01690;pseudo=true
LYPH01000033.1	Protein Homology	CDS	8116	8461	.	+	0	ID=cds-A8144_01690;Parent=gene-A8144_01690;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011780345.1;locus_tag=A8144_01690;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000033.1	Genbank	pseudogene	8606	9318	.	+	.	ID=gene-A8144_01695;Name=A8144_01695;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01695;pseudo=true
LYPH01000033.1	Protein Homology	CDS	8606	9318	.	+	0	ID=cds-A8144_01695;Parent=gene-A8144_01695;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014942128.1;locus_tag=A8144_01695;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000033.1	Genbank	gene	9343	9741	.	+	.	ID=gene-A8144_01700;Name=A8144_01700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01700
LYPH01000033.1	Protein Homology	CDS	9343	9741	.	+	0	ID=cds-OAR20759.1;Parent=gene-A8144_01700;Dbxref=NCBI_GP:OAR20759.1;Name=OAR20759.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q73ZR2.1;locus_tag=A8144_01700;product=glycine cleavage system protein H;protein_id=OAR20759.1;transl_table=11
LYPH01000033.1	Genbank	gene	9985	10473	.	+	.	ID=gene-A8144_01705;Name=A8144_01705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01705
LYPH01000033.1	Protein Homology	CDS	9985	10473	.	+	0	ID=cds-OAR20828.1;Parent=gene-A8144_01705;Dbxref=NCBI_GP:OAR20828.1;Name=OAR20828.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908705.1;locus_tag=A8144_01705;product=peptide-binding protein;protein_id=OAR20828.1;transl_table=11
LYPH01000033.1	Genbank	gene	10470	11225	.	+	.	ID=gene-A8144_01710;Name=A8144_01710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01710
LYPH01000033.1	Protein Homology	CDS	10470	11225	.	+	0	ID=cds-OAR20760.1;Parent=gene-A8144_01710;Dbxref=NCBI_GP:OAR20760.1;Name=OAR20760.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012394419.1;locus_tag=A8144_01710;product=MerR family transcriptional regulator;protein_id=OAR20760.1;transl_table=11
LYPH01000033.1	Genbank	gene	11342	11836	.	+	.	ID=gene-A8144_01715;Name=A8144_01715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01715
LYPH01000033.1	Protein Homology	CDS	11342	11836	.	+	0	ID=cds-OAR20761.1;Parent=gene-A8144_01715;Dbxref=NCBI_GP:OAR20761.1;Name=OAR20761.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q50604.2;locus_tag=A8144_01715;product=hypothetical protein;protein_id=OAR20761.1;transl_table=11
LYPH01000033.1	Genbank	gene	12114	12764	.	+	.	ID=gene-A8144_01720;Name=A8144_01720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01720
LYPH01000033.1	Protein Homology	CDS	12114	12764	.	+	0	ID=cds-OAR20762.1;Parent=gene-A8144_01720;Dbxref=NCBI_GP:OAR20762.1;Name=OAR20762.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007771372.1;locus_tag=A8144_01720;product=transcriptional regulator;protein_id=OAR20762.1;transl_table=11
LYPH01000033.1	Genbank	gene	12932	15790	.	+	.	ID=gene-A8144_01725;Name=A8144_01725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01725
LYPH01000033.1	Protein Homology	CDS	12932	15790	.	+	0	ID=cds-OAR20763.1;Parent=gene-A8144_01725;Dbxref=NCBI_GP:OAR20763.1;Name=OAR20763.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O32915.1;locus_tag=A8144_01725;product=glycine dehydrogenase (aminomethyl-transferring);protein_id=OAR20763.1;transl_table=11
LYPH01000033.1	Genbank	gene	16368	16574	.	-	.	ID=gene-A8144_01730;Name=A8144_01730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01730
LYPH01000033.1	GeneMarkS+	CDS	16368	16574	.	-	0	ID=cds-OAR20764.1;Parent=gene-A8144_01730;Dbxref=NCBI_GP:OAR20764.1;Name=OAR20764.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01730;product=hypothetical protein;protein_id=OAR20764.1;transl_table=11
LYPH01000033.1	Genbank	gene	16691	18892	.	-	.	ID=gene-A8144_01735;Name=A8144_01735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01735
LYPH01000033.1	Protein Homology	CDS	16691	18892	.	-	0	ID=cds-OAR20765.1;Parent=gene-A8144_01735;Dbxref=NCBI_GP:OAR20765.1;Name=OAR20765.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908700.1;locus_tag=A8144_01735;product=hypothetical protein;protein_id=OAR20765.1;transl_table=11
LYPH01000033.1	Genbank	gene	19018	21213	.	-	.	ID=gene-A8144_01740;Name=A8144_01740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01740
LYPH01000033.1	Protein Homology	CDS	19018	21213	.	-	0	ID=cds-OAR20766.1;Parent=gene-A8144_01740;Dbxref=NCBI_GP:OAR20766.1;Name=OAR20766.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:B8ZSN3.1;locus_tag=A8144_01740;product=malate synthase G;protein_id=OAR20766.1;transl_table=11
LYPH01000033.1	Genbank	pseudogene	21453	22516	.	-	.	ID=gene-A8144_01745;Name=A8144_01745;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01745;pseudo=true
LYPH01000033.1	Protein Homology	CDS	21453	22516	.	-	0	ID=cds-A8144_01745;Parent=gene-A8144_01745;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007170021.1;locus_tag=A8144_01745;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000033.1	Genbank	pseudogene	22555	23870	.	-	.	ID=gene-A8144_01750;Name=A8144_01750;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01750;pseudo=true
LYPH01000033.1	Protein Homology	CDS	22555	23870	.	-	0	ID=cds-A8144_01750;Parent=gene-A8144_01750;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003882020.1;locus_tag=A8144_01750;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000033.1	Genbank	gene	24073	25509	.	-	.	ID=gene-A8144_01755;Name=A8144_01755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01755
LYPH01000033.1	Protein Homology	CDS	24073	25509	.	-	0	ID=cds-OAR20767.1;Parent=gene-A8144_01755;Dbxref=NCBI_GP:OAR20767.1;Name=OAR20767.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_006243645.1;locus_tag=A8144_01755;product=inosine 5-monophosphate dehydrogenase;protein_id=OAR20767.1;transl_table=11
LYPH01000033.1	Genbank	gene	25579	27030	.	-	.	ID=gene-A8144_01760;Name=A8144_01760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01760
LYPH01000033.1	Protein Homology	CDS	25579	27030	.	-	0	ID=cds-OAR20829.1;Parent=gene-A8144_01760;Dbxref=NCBI_GP:OAR20829.1;Name=OAR20829.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908697.1;locus_tag=A8144_01760;product=phosphogluconate dehydrogenase (NADP(+)-dependent%2C decarboxylating);protein_id=OAR20829.1;transl_table=11
LYPH01000033.1	Genbank	gene	27170	28120	.	-	.	ID=gene-A8144_01765;Name=A8144_01765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01765
LYPH01000033.1	Protein Homology	CDS	27170	28120	.	-	0	ID=cds-OAR20768.1;Parent=gene-A8144_01765;Dbxref=NCBI_GP:OAR20768.1;Name=OAR20768.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007771352.1;locus_tag=A8144_01765;product=Zn-dependent protease with chaperone function;protein_id=OAR20768.1;transl_table=11
LYPH01000033.1	Genbank	gene	28125	28553	.	-	.	ID=gene-A8144_01770;Name=A8144_01770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01770
LYPH01000033.1	Protein Homology	CDS	28125	28553	.	-	0	ID=cds-OAR20769.1;Parent=gene-A8144_01770;Dbxref=NCBI_GP:OAR20769.1;Name=OAR20769.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908695.1;locus_tag=A8144_01770;product=transcriptional regulator;protein_id=OAR20769.1;transl_table=11
LYPH01000033.1	Genbank	gene	29387	30787	.	-	.	ID=gene-A8144_01775;Name=A8144_01775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01775
LYPH01000033.1	Protein Homology	CDS	29387	30787	.	-	0	ID=cds-OAR20770.1;Parent=gene-A8144_01775;Dbxref=NCBI_GP:OAR20770.1;Name=OAR20770.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908694.1;locus_tag=A8144_01775;product=NADH dehydrogenase;protein_id=OAR20770.1;transl_table=11
LYPH01000033.1	Genbank	pseudogene	30924	31929	.	-	.	ID=gene-A8144_01780;Name=A8144_01780;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01780;pseudo=true
LYPH01000033.1	Protein Homology	CDS	30924	31929	.	-	0	ID=cds-A8144_01780;Parent=gene-A8144_01780;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007771346.1;locus_tag=A8144_01780;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000033.1	Genbank	gene	31979	32653	.	-	.	ID=gene-A8144_01785;Name=A8144_01785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01785
LYPH01000033.1	Protein Homology	CDS	31979	32653	.	-	0	ID=cds-OAR20830.1;Parent=gene-A8144_01785;Dbxref=NCBI_GP:OAR20830.1;Name=OAR20830.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908693.1;locus_tag=A8144_01785;product=short-chain dehydrogenase;protein_id=OAR20830.1;transl_table=11
LYPH01000033.1	Genbank	pseudogene	32918	33669	.	+	.	ID=gene-A8144_01790;Name=A8144_01790;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01790;pseudo=true
LYPH01000033.1	Protein Homology	CDS	32918	33669	.	+	0	ID=cds-A8144_01790;Parent=gene-A8144_01790;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003901271.1;locus_tag=A8144_01790;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000033.1	Genbank	pseudogene	33678	34488	.	+	.	ID=gene-A8144_01795;Name=A8144_01795;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01795;pseudo=true
LYPH01000033.1	Protein Homology	CDS	33678	34488	.	+	0	ID=cds-A8144_01795;Parent=gene-A8144_01795;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019305829.1;locus_tag=A8144_01795;product=molybdenum ABC transporter permease;pseudo=true;transl_table=11
LYPH01000033.1	Genbank	pseudogene	34494	35610	.	+	.	ID=gene-A8144_01800;Name=A8144_01800;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01800;pseudo=true
LYPH01000033.1	Protein Homology	CDS	34494	35610	.	+	0	ID=cds-A8144_01800;Parent=gene-A8144_01800;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011740881.1;locus_tag=A8144_01800;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000033.1	Genbank	gene	35705	36568	.	+	.	ID=gene-A8144_01805;Name=A8144_01805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01805
LYPH01000033.1	Protein Homology	CDS	35705	36568	.	+	0	ID=cds-OAR20771.1;Parent=gene-A8144_01805;Dbxref=NCBI_GP:OAR20771.1;Name=OAR20771.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46842.2;locus_tag=A8144_01805;product=hypothetical protein;protein_id=OAR20771.1;transl_table=11
LYPH01000033.1	Genbank	gene	36728	37027	.	+	.	ID=gene-A8144_01810;Name=A8144_01810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01810
LYPH01000033.1	Protein Homology	CDS	36728	37027	.	+	0	ID=cds-OAR20772.1;Parent=gene-A8144_01810;Dbxref=NCBI_GP:OAR20772.1;Name=OAR20772.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908691.1;locus_tag=A8144_01810;product=hypothetical protein;protein_id=OAR20772.1;transl_table=11
LYPH01000033.1	Genbank	gene	37081	38112	.	+	.	ID=gene-A8144_01815;Name=A8144_01815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01815
LYPH01000033.1	Protein Homology	CDS	37081	38112	.	+	0	ID=cds-OAR20773.1;Parent=gene-A8144_01815;Dbxref=NCBI_GP:OAR20773.1;Name=OAR20773.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008256921.1;locus_tag=A8144_01815;product=alcohol dehydrogenase;protein_id=OAR20773.1;transl_table=11
LYPH01000033.1	Genbank	gene	38762	39460	.	-	.	ID=gene-A8144_01820;Name=A8144_01820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01820
LYPH01000033.1	GeneMarkS+	CDS	38762	39460	.	-	0	ID=cds-OAR20774.1;Parent=gene-A8144_01820;Dbxref=NCBI_GP:OAR20774.1;Name=OAR20774.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01820;product=hypothetical protein;protein_id=OAR20774.1;transl_table=11
LYPH01000033.1	Genbank	pseudogene	40111	40731	.	-	.	ID=gene-A8144_01825;Name=A8144_01825;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01825;pseudo=true
LYPH01000033.1	Protein Homology	CDS	40111	40731	.	-	0	ID=cds-A8144_01825;Parent=gene-A8144_01825;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009953026.1;locus_tag=A8144_01825;product=endonuclease;pseudo=true;transl_table=11
LYPH01000033.1	Genbank	gene	41147	41404	.	-	.	ID=gene-A8144_01830;Name=A8144_01830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01830
LYPH01000033.1	Protein Homology	CDS	41147	41404	.	-	0	ID=cds-OAR20775.1;Parent=gene-A8144_01830;Dbxref=NCBI_GP:OAR20775.1;Name=OAR20775.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908689.1;locus_tag=A8144_01830;product=hypothetical protein;protein_id=OAR20775.1;transl_table=11
LYPH01000033.1	Genbank	gene	42406	43650	.	-	.	ID=gene-A8144_01835;Name=A8144_01835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01835
LYPH01000033.1	Protein Homology	CDS	42406	43650	.	-	0	ID=cds-OAR20776.1;Parent=gene-A8144_01835;Dbxref=NCBI_GP:OAR20776.1;Name=OAR20776.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908688.1;locus_tag=A8144_01835;product=alpha-hydroxy-acid oxidizing enzyme;protein_id=OAR20776.1;transl_table=11
LYPH01000033.1	Genbank	gene	43954	44211	.	-	.	ID=gene-A8144_01840;Name=A8144_01840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01840
LYPH01000033.1	Protein Homology	CDS	43954	44211	.	-	0	ID=cds-OAR20831.1;Parent=gene-A8144_01840;Dbxref=NCBI_GP:OAR20831.1;Name=OAR20831.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908687.1;locus_tag=A8144_01840;product=hypothetical protein;protein_id=OAR20831.1;transl_table=11
LYPH01000033.1	Genbank	gene	44620	44841	.	+	.	ID=gene-A8144_01845;Name=A8144_01845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01845
LYPH01000033.1	Protein Homology	CDS	44620	44841	.	+	0	ID=cds-OAR20777.1;Parent=gene-A8144_01845;Dbxref=NCBI_GP:OAR20777.1;Name=OAR20777.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908686.1;locus_tag=A8144_01845;product=hypothetical protein;protein_id=OAR20777.1;transl_table=11
LYPH01000033.1	Genbank	pseudogene	45067	45553	.	-	.	ID=gene-A8144_01850;Name=A8144_01850;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01850;pseudo=true
LYPH01000033.1	Protein Homology	CDS	45067	45553	.	-	0	ID=cds-A8144_01850;Parent=gene-A8144_01850;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014942167.1;locus_tag=A8144_01850;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000033.1	Genbank	gene	45593	46180	.	-	.	ID=gene-A8144_01855;Name=A8144_01855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01855
LYPH01000033.1	Protein Homology	CDS	45593	46180	.	-	0	ID=cds-OAR20778.1;Parent=gene-A8144_01855;Dbxref=NCBI_GP:OAR20778.1;Name=OAR20778.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003876555.1;locus_tag=A8144_01855;product=alkyl hydroperoxide reductase;protein_id=OAR20778.1;transl_table=11
LYPH01000033.1	Genbank	gene	46290	47225	.	+	.	ID=gene-A8144_01860;Name=A8144_01860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01860
LYPH01000033.1	Protein Homology	CDS	46290	47225	.	+	0	ID=cds-OAR20779.1;Parent=gene-A8144_01860;Dbxref=NCBI_GP:OAR20779.1;Name=OAR20779.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P52678.1;locus_tag=A8144_01860;product=LysR family transcriptional regulator;protein_id=OAR20779.1;transl_table=11
LYPH01000033.1	Genbank	gene	49407	49886	.	+	.	ID=gene-A8144_01865;Name=A8144_01865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01865
LYPH01000033.1	Protein Homology	CDS	49407	49886	.	+	0	ID=cds-OAR20832.1;Parent=gene-A8144_01865;Dbxref=NCBI_GP:OAR20832.1;Name=OAR20832.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908683.1;locus_tag=A8144_01865;product=bacterioferritin;protein_id=OAR20832.1;transl_table=11
LYPH01000033.1	Genbank	pseudogene	51591	52511	.	+	.	ID=gene-A8144_01870;Name=A8144_01870;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01870;pseudo=true
LYPH01000033.1	Protein Homology	CDS	51591	52511	.	+	0	ID=cds-A8144_01870;Parent=gene-A8144_01870;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003902185.1;locus_tag=A8144_01870;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000033.1	Genbank	gene	52930	53121	.	-	.	ID=gene-A8144_01875;Name=A8144_01875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01875
LYPH01000033.1	GeneMarkS+	CDS	52930	53121	.	-	0	ID=cds-OAR20780.1;Parent=gene-A8144_01875;Dbxref=NCBI_GP:OAR20780.1;Name=OAR20780.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01875;product=hypothetical protein;protein_id=OAR20780.1;transl_table=11
LYPH01000033.1	Genbank	gene	53780	54043	.	+	.	ID=gene-A8144_01880;Name=A8144_01880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01880
LYPH01000033.1	Protein Homology	CDS	53780	54043	.	+	0	ID=cds-OAR20781.1;Parent=gene-A8144_01880;Dbxref=NCBI_GP:OAR20781.1;Name=OAR20781.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908682.1;locus_tag=A8144_01880;product=hypothetical protein;protein_id=OAR20781.1;transl_table=11
LYPH01000033.1	Genbank	pseudogene	55147	56508	.	-	.	ID=gene-A8144_01885;Name=A8144_01885;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01885;pseudo=true
LYPH01000033.1	Protein Homology	CDS	55147	56508	.	-	0	ID=cds-A8144_01885;Parent=gene-A8144_01885;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020729013.1;locus_tag=A8144_01885;product=cytochrome;pseudo=true;transl_table=11
LYPH01000033.1	Genbank	gene	56898	57218	.	+	.	ID=gene-A8144_01890;Name=A8144_01890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01890
LYPH01000033.1	GeneMarkS+	CDS	56898	57218	.	+	0	ID=cds-OAR20782.1;Parent=gene-A8144_01890;Dbxref=NCBI_GP:OAR20782.1;Name=OAR20782.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01890;product=hypothetical protein;protein_id=OAR20782.1;transl_table=11
LYPH01000033.1	Genbank	gene	57603	58058	.	-	.	ID=gene-A8144_01895;Name=A8144_01895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01895
LYPH01000033.1	Protein Homology	CDS	57603	58058	.	-	0	ID=cds-OAR20783.1;Parent=gene-A8144_01895;Dbxref=NCBI_GP:OAR20783.1;Name=OAR20783.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908681.1;locus_tag=A8144_01895;product=cyclase;protein_id=OAR20783.1;transl_table=11
LYPH01000033.1	Genbank	gene	58089	58556	.	-	.	ID=gene-A8144_01900;Name=A8144_01900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01900
LYPH01000033.1	Protein Homology	CDS	58089	58556	.	-	0	ID=cds-OAR20784.1;Parent=gene-A8144_01900;Dbxref=NCBI_GP:OAR20784.1;Name=OAR20784.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014380156.1;locus_tag=A8144_01900;product=Resuscitation-promoting factor RpfC;protein_id=OAR20784.1;transl_table=11
LYPH01000033.1	Genbank	gene	59606	60589	.	-	.	ID=gene-A8144_01905;Name=A8144_01905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01905
LYPH01000033.1	Protein Homology	CDS	59606	60589	.	-	0	ID=cds-OAR20785.1;Parent=gene-A8144_01905;Dbxref=NCBI_GP:OAR20785.1;Name=OAR20785.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P31951.2;locus_tag=A8144_01905;product=diacylglycerol acyltransferase/mycolyltransferase Ag85A;protein_id=OAR20785.1;transl_table=11
LYPH01000033.1	Genbank	gene	61676	61948	.	-	.	ID=gene-A8144_01910;Name=A8144_01910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01910
LYPH01000033.1	GeneMarkS+	CDS	61676	61948	.	-	0	ID=cds-OAR20786.1;Parent=gene-A8144_01910;Dbxref=NCBI_GP:OAR20786.1;Name=OAR20786.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01910;product=hypothetical protein;protein_id=OAR20786.1;transl_table=11
LYPH01000033.1	Genbank	gene	62012	62305	.	+	.	ID=gene-A8144_01915;Name=A8144_01915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01915
LYPH01000033.1	GeneMarkS+	CDS	62012	62305	.	+	0	ID=cds-OAR20787.1;Parent=gene-A8144_01915;Dbxref=NCBI_GP:OAR20787.1;Name=OAR20787.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01915;product=hypothetical protein;protein_id=OAR20787.1;transl_table=11
LYPH01000033.1	Genbank	gene	62447	62740	.	-	.	ID=gene-A8144_01920;Name=A8144_01920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01920
LYPH01000033.1	GeneMarkS+	CDS	62447	62740	.	-	0	ID=cds-OAR20788.1;Parent=gene-A8144_01920;Dbxref=NCBI_GP:OAR20788.1;Name=OAR20788.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01920;product=hypothetical protein;protein_id=OAR20788.1;transl_table=11
LYPH01000033.1	Genbank	pseudogene	62985	64161	.	-	.	ID=gene-A8144_01925;Name=A8144_01925;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01925;pseudo=true
LYPH01000033.1	Protein Homology	CDS	62985	64161	.	-	0	ID=cds-A8144_01925;Parent=gene-A8144_01925;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003921894.1;locus_tag=A8144_01925;product=steroid C27-monooxygenase;pseudo=true;transl_table=11
LYPH01000033.1	Genbank	gene	64541	64945	.	+	.	ID=gene-A8144_01930;Name=A8144_01930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01930
LYPH01000033.1	Protein Homology	CDS	64541	64945	.	+	0	ID=cds-OAR20789.1;Parent=gene-A8144_01930;Dbxref=NCBI_GP:OAR20789.1;Name=OAR20789.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007771261.1;locus_tag=A8144_01930;product=hypothetical protein;protein_id=OAR20789.1;transl_table=11
LYPH01000033.1	Genbank	gene	65341	65565	.	+	.	ID=gene-A8144_01935;Name=A8144_01935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01935
LYPH01000033.1	Protein Homology	CDS	65341	65565	.	+	0	ID=cds-OAR20833.1;Parent=gene-A8144_01935;Dbxref=NCBI_GP:OAR20833.1;Name=OAR20833.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019735098.1;locus_tag=A8144_01935;product=hypothetical protein;protein_id=OAR20833.1;transl_table=11
LYPH01000033.1	Genbank	pseudogene	65557	66692	.	-	.	ID=gene-A8144_01940;Name=A8144_01940;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01940;pseudo=true
LYPH01000033.1	Protein Homology	CDS	65557	66692	.	-	0	ID=cds-A8144_01940;Parent=gene-A8144_01940;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005083600.1;locus_tag=A8144_01940;product=monooxygenase;pseudo=true;transl_table=11
LYPH01000033.1	Genbank	gene	66980	67891	.	-	.	ID=gene-A8144_01945;Name=A8144_01945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01945
LYPH01000033.1	Protein Homology	CDS	66980	67891	.	-	0	ID=cds-OAR20790.1;Parent=gene-A8144_01945;Dbxref=NCBI_GP:OAR20790.1;Name=OAR20790.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009956812.1;locus_tag=A8144_01945;product=SAM-dependent methyltransferase;protein_id=OAR20790.1;transl_table=11
LYPH01000033.1	Genbank	gene	68540	68869	.	-	.	ID=gene-A8144_01950;Name=A8144_01950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01950
LYPH01000033.1	GeneMarkS+	CDS	68540	68869	.	-	0	ID=cds-OAR20791.1;Parent=gene-A8144_01950;Dbxref=NCBI_GP:OAR20791.1;Name=OAR20791.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01950;product=hypothetical protein;protein_id=OAR20791.1;transl_table=11
LYPH01000033.1	Genbank	gene	69256	69480	.	-	.	ID=gene-A8144_01955;Name=A8144_01955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01955
LYPH01000033.1	GeneMarkS+	CDS	69256	69480	.	-	0	ID=cds-OAR20792.1;Parent=gene-A8144_01955;Dbxref=NCBI_GP:OAR20792.1;Name=OAR20792.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01955;product=hypothetical protein;protein_id=OAR20792.1;transl_table=11
LYPH01000033.1	Genbank	gene	69477	69893	.	-	.	ID=gene-A8144_01960;Name=A8144_01960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01960
LYPH01000033.1	GeneMarkS+	CDS	69477	69893	.	-	0	ID=cds-OAR20793.1;Parent=gene-A8144_01960;Dbxref=NCBI_GP:OAR20793.1;Name=OAR20793.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_01960;product=hypothetical protein;protein_id=OAR20793.1;transl_table=11
LYPH01000033.1	Genbank	gene	70611	71909	.	+	.	ID=gene-A8144_01965;Name=A8144_01965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01965
LYPH01000033.1	Protein Homology	CDS	70611	71909	.	+	0	ID=cds-OAR20794.1;Parent=gene-A8144_01965;Dbxref=NCBI_GP:OAR20794.1;Name=OAR20794.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908675.1;locus_tag=A8144_01965;product=competence/damage-inducible protein A;protein_id=OAR20794.1;transl_table=11
LYPH01000033.1	Genbank	pseudogene	71884	73167	.	-	.	ID=gene-A8144_01970;Name=A8144_01970;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01970;pseudo=true
LYPH01000033.1	Protein Homology	CDS	71884	73167	.	-	0	ID=cds-A8144_01970;Parent=gene-A8144_01970;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009976915.1;locus_tag=A8144_01970;product=sugar transporter;pseudo=true;transl_table=11
LYPH01000033.1	Genbank	gene	73473	73853	.	+	.	ID=gene-A8144_01975;Name=A8144_01975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01975
LYPH01000033.1	Protein Homology	CDS	73473	73853	.	+	0	ID=cds-OAR20795.1;Parent=gene-A8144_01975;Dbxref=NCBI_GP:OAR20795.1;Name=OAR20795.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908674.1;locus_tag=A8144_01975;product=hypothetical protein;protein_id=OAR20795.1;transl_table=11
LYPH01000033.1	Genbank	gene	74321	74740	.	+	.	ID=gene-A8144_01980;Name=A8144_01980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01980
LYPH01000033.1	Protein Homology	CDS	74321	74740	.	+	0	ID=cds-OAR20796.1;Parent=gene-A8144_01980;Dbxref=NCBI_GP:OAR20796.1;Name=OAR20796.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908673.1;locus_tag=A8144_01980;product=hypothetical protein;protein_id=OAR20796.1;transl_table=11
LYPH01000033.1	Genbank	gene	74758	75720	.	-	.	ID=gene-A8144_01985;Name=A8144_01985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01985
LYPH01000033.1	Protein Homology	CDS	74758	75720	.	-	0	ID=cds-OAR20797.1;Parent=gene-A8144_01985;Dbxref=NCBI_GP:OAR20797.1;Name=OAR20797.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908672.1;locus_tag=A8144_01985;product=amino acid oxidase;protein_id=OAR20797.1;transl_table=11
LYPH01000033.1	Genbank	gene	75775	76236	.	-	.	ID=gene-A8144_01990;Name=A8144_01990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_01990
LYPH01000033.1	Protein Homology	CDS	75775	76236	.	-	0	ID=cds-OAR20798.1;Parent=gene-A8144_01990;Dbxref=NCBI_GP:OAR20798.1;Name=OAR20798.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908671.1;locus_tag=A8144_01990;product=hypothetical protein;protein_id=OAR20798.1;transl_table=11
LYPH01000033.1	Genbank	pseudogene	76318	78285	.	-	.	ID=gene-A8144_01995;Name=A8144_01995;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_01995;pseudo=true
LYPH01000033.1	Protein Homology	CDS	76318	78285	.	-	0	ID=cds-A8144_01995;Parent=gene-A8144_01995;Note=has catalase and peroxidase activities%3B frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003916002.1;locus_tag=A8144_01995;product=hydroperoxidase;pseudo=true;transl_table=11
LYPH01000033.1	Genbank	gene	78866	79057	.	-	.	ID=gene-A8144_02000;Name=A8144_02000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02000
LYPH01000033.1	GeneMarkS+	CDS	78866	79057	.	-	0	ID=cds-OAR20799.1;Parent=gene-A8144_02000;Dbxref=NCBI_GP:OAR20799.1;Name=OAR20799.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02000;product=hypothetical protein;protein_id=OAR20799.1;transl_table=11
LYPH01000033.1	Genbank	gene	79771	80034	.	+	.	ID=gene-A8144_02005;Name=A8144_02005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02005
LYPH01000033.1	GeneMarkS+	CDS	79771	80034	.	+	0	ID=cds-OAR20800.1;Parent=gene-A8144_02005;Dbxref=NCBI_GP:OAR20800.1;Name=OAR20800.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02005;product=hypothetical protein;protein_id=OAR20800.1;transl_table=11
LYPH01000033.1	Genbank	gene	80164	80346	.	+	.	ID=gene-A8144_02010;Name=A8144_02010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02010
LYPH01000033.1	GeneMarkS+	CDS	80164	80346	.	+	0	ID=cds-OAR20801.1;Parent=gene-A8144_02010;Dbxref=NCBI_GP:OAR20801.1;Name=OAR20801.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02010;product=hypothetical protein;protein_id=OAR20801.1;transl_table=11
LYPH01000033.1	Genbank	gene	80436	80627	.	-	.	ID=gene-A8144_02015;Name=A8144_02015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02015
LYPH01000033.1	GeneMarkS+	CDS	80436	80627	.	-	0	ID=cds-OAR20802.1;Parent=gene-A8144_02015;Dbxref=NCBI_GP:OAR20802.1;Name=OAR20802.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02015;product=hypothetical protein;protein_id=OAR20802.1;transl_table=11
LYPH01000033.1	Genbank	pseudogene	81519	82453	.	-	.	ID=gene-A8144_02020;Name=A8144_02020;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02020;pseudo=true
LYPH01000033.1	Protein Homology	CDS	81519	82453	.	-	0	ID=cds-A8144_02020;Parent=gene-A8144_02020;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020786503.1;locus_tag=A8144_02020;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000033.1	Genbank	gene	82541	82801	.	-	.	ID=gene-A8144_02025;Name=A8144_02025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02025
LYPH01000033.1	GeneMarkS+	CDS	82541	82801	.	-	0	ID=cds-OAR20803.1;Parent=gene-A8144_02025;Dbxref=NCBI_GP:OAR20803.1;Name=OAR20803.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02025;product=hypothetical protein;protein_id=OAR20803.1;transl_table=11
LYPH01000033.1	Genbank	pseudogene	83426	84205	.	-	.	ID=gene-A8144_02030;Name=A8144_02030;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02030;pseudo=true
LYPH01000033.1	Protein Homology	CDS	83426	84205	.	-	0	ID=cds-A8144_02030;Parent=gene-A8144_02030;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003903678.1;locus_tag=A8144_02030;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000033.1	Genbank	pseudogene	84359	84684	.	-	.	ID=gene-A8144_02035;Name=A8144_02035;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02035;pseudo=true
LYPH01000033.1	Protein Homology	CDS	84359	84684	.	-	0	ID=cds-A8144_02035;Parent=gene-A8144_02035;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008256792.1;locus_tag=A8144_02035;product=polyketide cyclase;pseudo=true;transl_table=11
LYPH01000033.1	Genbank	pseudogene	84883	85559	.	+	.	ID=gene-A8144_02040;Name=A8144_02040;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02040;pseudo=true
LYPH01000033.1	Protein Homology	CDS	84883	85559	.	+	0	ID=cds-A8144_02040;Parent=gene-A8144_02040;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012394522.1;locus_tag=A8144_02040;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000033.1	Genbank	gene	85640	87892	.	+	.	ID=gene-A8144_02045;Name=A8144_02045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02045
LYPH01000033.1	Protein Homology	CDS	85640	87892	.	+	0	ID=cds-OAR20804.1;Parent=gene-A8144_02045;Dbxref=NCBI_GP:OAR20804.1;Name=OAR20804.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46840.2;locus_tag=A8144_02045;product=copper-translocating P-type ATPase;protein_id=OAR20804.1;transl_table=11
LYPH01000033.1	Genbank	gene	88291	88548	.	+	.	ID=gene-A8144_02050;Name=A8144_02050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02050
LYPH01000033.1	GeneMarkS+	CDS	88291	88548	.	+	0	ID=cds-OAR20805.1;Parent=gene-A8144_02050;Dbxref=NCBI_GP:OAR20805.1;Name=OAR20805.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02050;product=hypothetical protein;protein_id=OAR20805.1;transl_table=11
LYPH01000033.1	Genbank	gene	88953	90932	.	-	.	ID=gene-A8144_02055;Name=A8144_02055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02055
LYPH01000033.1	Protein Homology	CDS	88953	90932	.	-	0	ID=cds-OAR20806.1;Parent=gene-A8144_02055;Dbxref=NCBI_GP:OAR20806.1;Name=OAR20806.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P53525.1;locus_tag=A8144_02055;product=hypothetical protein;protein_id=OAR20806.1;transl_table=11
LYPH01000033.1	Genbank	gene	91045	91677	.	+	.	ID=gene-A8144_02060;Name=A8144_02060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02060
LYPH01000033.1	Protein Homology	CDS	91045	91677	.	+	0	ID=cds-OAR20807.1;Parent=gene-A8144_02060;Dbxref=NCBI_GP:OAR20807.1;Name=OAR20807.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908668.1;locus_tag=A8144_02060;product=DUF5134 domain-containing protein;protein_id=OAR20807.1;transl_table=11
LYPH01000033.1	Genbank	gene	91684	95889	.	-	.	ID=gene-A8144_02065;Name=A8144_02065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02065
LYPH01000033.1	Protein Homology	CDS	91684	95889	.	-	0	ID=cds-OAR20808.1;Parent=gene-A8144_02065;Dbxref=NCBI_GP:OAR20808.1;Name=OAR20808.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908667.1;locus_tag=A8144_02065;product=peptide synthase;protein_id=OAR20808.1;transl_table=11
LYPH01000033.1	Genbank	gene	95886	96122	.	-	.	ID=gene-A8144_02070;Name=A8144_02070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02070
LYPH01000033.1	Protein Homology	CDS	95886	96122	.	-	0	ID=cds-OAR20809.1;Parent=gene-A8144_02070;Dbxref=NCBI_GP:OAR20809.1;Name=OAR20809.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908666.1;locus_tag=A8144_02070;product=hypothetical protein;protein_id=OAR20809.1;transl_table=11
LYPH01000033.1	Genbank	gene	96115	97713	.	-	.	ID=gene-A8144_02075;Name=A8144_02075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02075
LYPH01000033.1	Protein Homology	CDS	96115	97713	.	-	0	ID=cds-OAR20810.1;Parent=gene-A8144_02075;Dbxref=NCBI_GP:OAR20810.1;Name=OAR20810.1;Note=activates fatty acids by binding to coenzyme A;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908665.1;locus_tag=A8144_02075;product=acyl-CoA synthetase;protein_id=OAR20810.1;transl_table=11
LYPH01000033.1	Genbank	gene	97743	98294	.	-	.	ID=gene-A8144_02080;Name=A8144_02080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02080
LYPH01000033.1	Protein Homology	CDS	97743	98294	.	-	0	ID=cds-OAR20811.1;Parent=gene-A8144_02080;Dbxref=NCBI_GP:OAR20811.1;Name=OAR20811.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908664.1;locus_tag=A8144_02080;product=hypothetical protein;protein_id=OAR20811.1;transl_table=11
LYPH01000033.1	Genbank	gene	98291	99160	.	-	.	ID=gene-A8144_02085;Name=A8144_02085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02085
LYPH01000033.1	Protein Homology	CDS	98291	99160	.	-	0	ID=cds-OAR20812.1;Parent=gene-A8144_02085;Dbxref=NCBI_GP:OAR20812.1;Name=OAR20812.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908663.1;locus_tag=A8144_02085;product=taurine catabolism dioxygenase;protein_id=OAR20812.1;transl_table=11
LYPH01000033.1	Genbank	gene	99309	100715	.	-	.	ID=gene-A8144_02090;Name=A8144_02090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02090
LYPH01000033.1	Protein Homology	CDS	99309	100715	.	-	0	ID=cds-OAR20834.1;Parent=gene-A8144_02090;Dbxref=NCBI_GP:OAR20834.1;Name=OAR20834.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908662.1;locus_tag=A8144_02090;product=hypothetical protein;protein_id=OAR20834.1;transl_table=11
LYPH01000033.1	Genbank	gene	101363	101617	.	+	.	ID=gene-A8144_02095;Name=A8144_02095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02095
LYPH01000033.1	GeneMarkS+	CDS	101363	101617	.	+	0	ID=cds-OAR20813.1;Parent=gene-A8144_02095;Dbxref=NCBI_GP:OAR20813.1;Name=OAR20813.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02095;product=hypothetical protein;protein_id=OAR20813.1;transl_table=11
LYPH01000033.1	Genbank	gene	101802	102044	.	+	.	ID=gene-A8144_02100;Name=A8144_02100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02100
LYPH01000033.1	Protein Homology	CDS	101802	102044	.	+	0	ID=cds-OAR20814.1;Parent=gene-A8144_02100;Dbxref=NCBI_GP:OAR20814.1;Name=OAR20814.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908661.1;locus_tag=A8144_02100;product=hypothetical protein;protein_id=OAR20814.1;transl_table=11
LYPH01000033.1	Genbank	gene	102124	102474	.	+	.	ID=gene-A8144_02105;Name=A8144_02105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02105
LYPH01000033.1	Protein Homology	CDS	102124	102474	.	+	0	ID=cds-OAR20815.1;Parent=gene-A8144_02105;Dbxref=NCBI_GP:OAR20815.1;Name=OAR20815.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908660.1;locus_tag=A8144_02105;product=hypothetical protein;protein_id=OAR20815.1;transl_table=11
LYPH01000033.1	Genbank	gene	102791	103504	.	+	.	ID=gene-A8144_02110;Name=A8144_02110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02110
LYPH01000033.1	Protein Homology	CDS	102791	103504	.	+	0	ID=cds-OAR20835.1;Parent=gene-A8144_02110;Dbxref=NCBI_GP:OAR20835.1;Name=OAR20835.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908659.1;locus_tag=A8144_02110;product=hypothetical protein;protein_id=OAR20835.1;transl_table=11
LYPH01000033.1	Genbank	gene	103482	105782	.	-	.	ID=gene-A8144_02115;Name=A8144_02115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02115
LYPH01000033.1	Protein Homology	CDS	103482	105782	.	-	0	ID=cds-OAR20816.1;Parent=gene-A8144_02115;Dbxref=NCBI_GP:OAR20816.1;Name=OAR20816.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908658.1;locus_tag=A8144_02115;product=copper-translocating P-type ATPase;protein_id=OAR20816.1;transl_table=11
LYPH01000033.1	Genbank	pseudogene	105975	106546	.	+	.	ID=gene-A8144_02120;Name=A8144_02120;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02120;pseudo=true
LYPH01000033.1	Protein Homology	CDS	105975	106546	.	+	0	ID=cds-A8144_02120;Parent=gene-A8144_02120;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014815144.1;locus_tag=A8144_02120;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000033.1	Genbank	gene	107119	109407	.	+	.	ID=gene-A8144_02125;Name=A8144_02125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02125
LYPH01000033.1	Protein Homology	CDS	107119	109407	.	+	0	ID=cds-OAR20817.1;Parent=gene-A8144_02125;Dbxref=NCBI_GP:OAR20817.1;Name=OAR20817.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008256786.1;locus_tag=A8144_02125;product=isocitrate lyase;protein_id=OAR20817.1;transl_table=11
LYPH01000033.1	Genbank	gene	111324	111791	.	-	.	ID=gene-A8144_02130;Name=A8144_02130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02130
LYPH01000033.1	Protein Homology	CDS	111324	111791	.	-	0	ID=cds-OAR20818.1;Parent=gene-A8144_02130;Dbxref=NCBI_GP:OAR20818.1;Name=OAR20818.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908656.1;locus_tag=A8144_02130;product=polyketide cyclase;protein_id=OAR20818.1;transl_table=11
LYPH01000033.1	Genbank	gene	112304	112612	.	-	.	ID=gene-A8144_02135;Name=A8144_02135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02135
LYPH01000033.1	Protein Homology	CDS	112304	112612	.	-	0	ID=cds-OAR20819.1;Parent=gene-A8144_02135;Dbxref=NCBI_GP:OAR20819.1;Name=OAR20819.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908655.1;locus_tag=A8144_02135;product=hypothetical protein;protein_id=OAR20819.1;transl_table=11
LYPH01000033.1	Genbank	gene	112843	113118	.	-	.	ID=gene-A8144_02140;Name=A8144_02140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02140
LYPH01000033.1	GeneMarkS+	CDS	112843	113118	.	-	0	ID=cds-OAR20820.1;Parent=gene-A8144_02140;Dbxref=NCBI_GP:OAR20820.1;Name=OAR20820.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02140;product=hypothetical protein;protein_id=OAR20820.1;transl_table=11
LYPH01000033.1	Genbank	gene	114868	115275	.	+	.	ID=gene-A8144_02145;Name=A8144_02145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02145
LYPH01000033.1	Protein Homology	CDS	114868	115275	.	+	0	ID=cds-OAR20821.1;Parent=gene-A8144_02145;Dbxref=NCBI_GP:OAR20821.1;Name=OAR20821.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908654.1;locus_tag=A8144_02145;product=hypothetical protein;protein_id=OAR20821.1;transl_table=11
LYPH01000033.1	Genbank	gene	116454	116783	.	+	.	ID=gene-A8144_02150;Name=A8144_02150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02150
LYPH01000033.1	GeneMarkS+	CDS	116454	116783	.	+	0	ID=cds-OAR20822.1;Parent=gene-A8144_02150;Dbxref=NCBI_GP:OAR20822.1;Name=OAR20822.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02150;product=hypothetical protein;protein_id=OAR20822.1;transl_table=11
LYPH01000033.1	Genbank	gene	116844	117140	.	-	.	ID=gene-A8144_02155;Name=A8144_02155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02155
LYPH01000033.1	GeneMarkS+	CDS	116844	117140	.	-	0	ID=cds-OAR20823.1;Parent=gene-A8144_02155;Dbxref=NCBI_GP:OAR20823.1;Name=OAR20823.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02155;product=hypothetical protein;protein_id=OAR20823.1;transl_table=11
LYPH01000033.1	Genbank	gene	117643	117990	.	+	.	ID=gene-A8144_02160;Name=A8144_02160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02160
LYPH01000033.1	Protein Homology	CDS	117643	117990	.	+	0	ID=cds-OAR20824.1;Parent=gene-A8144_02160;Dbxref=NCBI_GP:OAR20824.1;Name=OAR20824.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908653.1;locus_tag=A8144_02160;product=hypothetical protein;protein_id=OAR20824.1;transl_table=11
LYPH01000033.1	Genbank	gene	118157	118369	.	-	.	ID=gene-A8144_02165;Name=A8144_02165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02165
LYPH01000033.1	GeneMarkS+	CDS	118157	118369	.	-	0	ID=cds-OAR20825.1;Parent=gene-A8144_02165;Dbxref=NCBI_GP:OAR20825.1;Name=OAR20825.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02165;product=hypothetical protein;protein_id=OAR20825.1;transl_table=11
LYPH01000033.1	Genbank	gene	119039	120757	.	-	.	ID=gene-A8144_02170;Name=A8144_02170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02170
LYPH01000033.1	Protein Homology	CDS	119039	120757	.	-	0	ID=cds-OAR20826.1;Parent=gene-A8144_02170;Dbxref=NCBI_GP:OAR20826.1;Name=OAR20826.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908652.1;locus_tag=A8144_02170;product=transporter;protein_id=OAR20826.1;transl_table=11
LYPH01000033.1	Genbank	gene	122668	122898	.	+	.	ID=gene-A8144_02175;Name=A8144_02175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02175
LYPH01000033.1	Protein Homology	CDS	122668	122898	.	+	0	ID=cds-OAR20827.1;Parent=gene-A8144_02175;Dbxref=NCBI_GP:OAR20827.1;Name=OAR20827.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908651.1;locus_tag=A8144_02175;product=hypothetical protein;protein_id=OAR20827.1;transl_table=11
##sequence-region LYPH01000034.1 1 33386
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000034.1	Genbank	region	1	33386	.	+	.	ID=LYPH01000034.1:1..33386;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000034.1	Genbank	pseudogene	617	1769	.	+	.	ID=gene-A8144_09260;Name=A8144_09260;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09260;pseudo=true
LYPH01000034.1	Protein Homology	CDS	617	1769	.	+	0	ID=cds-A8144_09260;Parent=gene-A8144_09260;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005627912.1;locus_tag=A8144_09260;product=lipid-transfer protein;pseudo=true;transl_table=11
LYPH01000034.1	Genbank	gene	1843	2460	.	-	.	ID=gene-A8144_09265;Name=A8144_09265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09265
LYPH01000034.1	Protein Homology	CDS	1843	2460	.	-	0	ID=cds-OAR20731.1;Parent=gene-A8144_09265;Dbxref=NCBI_GP:OAR20731.1;Name=OAR20731.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908245.1;locus_tag=A8144_09265;product=transcriptional regulator;protein_id=OAR20731.1;transl_table=11
LYPH01000034.1	Genbank	gene	2553	2629	.	+	.	ID=gene-A8144_09270;Name=A8144_09270;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_09270
LYPH01000034.1	tRNAscan-SE	tRNA	2553	2629	.	+	.	ID=rna-A8144_09270;Parent=gene-A8144_09270;anticodon=(pos:2587..2589);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_09270;product=tRNA-Leu
LYPH01000034.1	tRNAscan-SE	exon	2553	2629	.	+	.	ID=exon-A8144_09270-1;Parent=rna-A8144_09270;anticodon=(pos:2587..2589);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_09270;product=tRNA-Leu
LYPH01000034.1	Genbank	pseudogene	2806	4036	.	+	.	ID=gene-A8144_09275;Name=A8144_09275;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09275;pseudo=true
LYPH01000034.1	Protein Homology	CDS	2806	4036	.	+	0	ID=cds-A8144_09275;Parent=gene-A8144_09275;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003901209.1;locus_tag=A8144_09275;product=adenylate cyclase;pseudo=true;transl_table=11
LYPH01000034.1	Genbank	pseudogene	4183	5503	.	+	.	ID=gene-A8144_09280;Name=A8144_09280;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09280;pseudo=true
LYPH01000034.1	Protein Homology	CDS	4183	5503	.	+	0	ID=cds-A8144_09280;Parent=gene-A8144_09280;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing start;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007776151.1;locus_tag=A8144_09280;product=cytochrome BD ubiquinol oxidase subunit I;pseudo=true;transl_table=11
LYPH01000034.1	Genbank	pseudogene	5535	6556	.	+	.	ID=gene-A8144_09285;Name=A8144_09285;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09285;pseudo=true
LYPH01000034.1	Protein Homology	CDS	5535	6556	.	+	0	ID=cds-A8144_09285;Parent=gene-A8144_09285;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014815805.1;locus_tag=A8144_09285;product=cytochrome d ubiquinol oxidase subunit II;pseudo=true;transl_table=11
LYPH01000034.1	Genbank	pseudogene	6658	8238	.	+	.	ID=gene-A8144_09290;Name=A8144_09290;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09290;pseudo=true
LYPH01000034.1	Protein Homology	CDS	6658	8238	.	+	0	ID=cds-A8144_09290;Parent=gene-A8144_09290;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014000853.1;locus_tag=A8144_09290;product=thiol reductant ABC exporter subunit CydD;pseudo=true;transl_table=11
LYPH01000034.1	Genbank	pseudogene	8370	10000	.	+	.	ID=gene-A8144_09295;Name=A8144_09295;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09295;pseudo=true
LYPH01000034.1	Protein Homology	CDS	8370	10000	.	+	0	ID=cds-A8144_09295;Parent=gene-A8144_09295;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020787682.1;locus_tag=A8144_09295;product=thiol reductant ABC exporter subunit CydC;pseudo=true;transl_table=11
LYPH01000034.1	Genbank	gene	10025	10312	.	-	.	ID=gene-A8144_09300;Name=A8144_09300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09300
LYPH01000034.1	GeneMarkS+	CDS	10025	10312	.	-	0	ID=cds-OAR20732.1;Parent=gene-A8144_09300;Dbxref=NCBI_GP:OAR20732.1;Name=OAR20732.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09300;product=hypothetical protein;protein_id=OAR20732.1;transl_table=11
LYPH01000034.1	Genbank	pseudogene	10724	11995	.	-	.	ID=gene-A8144_09305;Name=A8144_09305;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09305;pseudo=true
LYPH01000034.1	Protein Homology	CDS	10724	11995	.	-	0	ID=cds-A8144_09305;Parent=gene-A8144_09305;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011725301.1;locus_tag=A8144_09305;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000034.1	Genbank	gene	12168	13073	.	-	.	ID=gene-A8144_09310;Name=A8144_09310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09310
LYPH01000034.1	Protein Homology	CDS	12168	13073	.	-	0	ID=cds-OAR20733.1;Parent=gene-A8144_09310;Dbxref=NCBI_GP:OAR20733.1;Name=OAR20733.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908244.1;locus_tag=A8144_09310;product=acyl-CoA thioesterase II;protein_id=OAR20733.1;transl_table=11
LYPH01000034.1	Genbank	gene	13167	14585	.	-	.	ID=gene-A8144_09315;Name=A8144_09315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09315
LYPH01000034.1	Protein Homology	CDS	13167	14585	.	-	0	ID=cds-OAR20734.1;Parent=gene-A8144_09315;Dbxref=NCBI_GP:OAR20734.1;Name=OAR20734.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003886189.1;locus_tag=A8144_09315;product=pyruvate kinase;protein_id=OAR20734.1;transl_table=11
LYPH01000034.1	Genbank	gene	14668	15108	.	-	.	ID=gene-A8144_09320;Name=A8144_09320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09320
LYPH01000034.1	Protein Homology	CDS	14668	15108	.	-	0	ID=cds-OAR20735.1;Parent=gene-A8144_09320;Dbxref=NCBI_GP:OAR20735.1;Name=OAR20735.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908242.1;locus_tag=A8144_09320;product=hypothetical protein;protein_id=OAR20735.1;transl_table=11
LYPH01000034.1	Genbank	gene	15098	15541	.	-	.	ID=gene-A8144_09325;Name=A8144_09325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09325
LYPH01000034.1	Protein Homology	CDS	15098	15541	.	-	0	ID=cds-OAR20736.1;Parent=gene-A8144_09325;Dbxref=NCBI_GP:OAR20736.1;Name=OAR20736.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009938400.1;locus_tag=A8144_09325;product=hypothetical protein;protein_id=OAR20736.1;transl_table=11
LYPH01000034.1	Genbank	gene	15660	15896	.	-	.	ID=gene-A8144_09330;Name=A8144_09330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09330
LYPH01000034.1	Protein Homology	CDS	15660	15896	.	-	0	ID=cds-OAR20737.1;Parent=gene-A8144_09330;Dbxref=NCBI_GP:OAR20737.1;Name=OAR20737.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908241.1;locus_tag=A8144_09330;product=hypothetical protein;protein_id=OAR20737.1;transl_table=11
LYPH01000034.1	Genbank	gene	15893	16885	.	-	.	ID=gene-A8144_09335;Name=A8144_09335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09335
LYPH01000034.1	Protein Homology	CDS	15893	16885	.	-	0	ID=cds-OAR20738.1;Parent=gene-A8144_09335;Dbxref=NCBI_GP:OAR20738.1;Name=OAR20738.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CC52.1;locus_tag=A8144_09335;product=prolipoprotein diacylglyceryl transferase;protein_id=OAR20738.1;transl_table=11
LYPH01000034.1	Genbank	gene	16882	17694	.	-	.	ID=gene-A8144_09340;Name=A8144_09340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09340
LYPH01000034.1	Protein Homology	CDS	16882	17694	.	-	0	ID=cds-OAR20739.1;Parent=gene-A8144_09340;Dbxref=NCBI_GP:OAR20739.1;Name=OAR20739.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CC53.1;locus_tag=A8144_09340;product=tryptophan synthase subunit alpha;protein_id=OAR20739.1;transl_table=11
LYPH01000034.1	Genbank	gene	17691	18941	.	-	.	ID=gene-A8144_09345;Name=A8144_09345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09345
LYPH01000034.1	Protein Homology	CDS	17691	18941	.	-	0	ID=cds-OAR20740.1;Parent=gene-A8144_09345;Dbxref=NCBI_GP:OAR20740.1;Name=OAR20740.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008257756.1;locus_tag=A8144_09345;product=tryptophan synthase subunit beta;protein_id=OAR20740.1;transl_table=11
LYPH01000034.1	Genbank	gene	19008	19826	.	-	.	ID=gene-A8144_09350;Name=A8144_09350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09350
LYPH01000034.1	Protein Homology	CDS	19008	19826	.	-	0	ID=cds-OAR20741.1;Parent=gene-A8144_09350;Dbxref=NCBI_GP:OAR20741.1;Name=OAR20741.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014815791.1;locus_tag=A8144_09350;product=indole-3-glycerol phosphate synthase;protein_id=OAR20741.1;transl_table=11
LYPH01000034.1	Genbank	gene	19804	20601	.	-	.	ID=gene-A8144_09355;Name=A8144_09355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09355
LYPH01000034.1	Protein Homology	CDS	19804	20601	.	-	0	ID=cds-OAR20742.1;Parent=gene-A8144_09355;Dbxref=NCBI_GP:OAR20742.1;Name=OAR20742.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908236.1;locus_tag=A8144_09355;product=hypothetical protein;protein_id=OAR20742.1;transl_table=11
LYPH01000034.1	Genbank	gene	20598	22187	.	-	.	ID=gene-A8144_09360;Name=A8144_09360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09360
LYPH01000034.1	Protein Homology	CDS	20598	22187	.	-	0	ID=cds-OAR20743.1;Parent=gene-A8144_09360;Dbxref=NCBI_GP:OAR20743.1;Name=OAR20743.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9X7C5.1;locus_tag=A8144_09360;product=anthranilate synthase component I;protein_id=OAR20743.1;transl_table=11
LYPH01000034.1	Genbank	pseudogene	22296	22760	.	+	.	ID=gene-A8144_09365;Name=A8144_09365;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09365;pseudo=true
LYPH01000034.1	Protein Homology	CDS	22296	22760	.	+	0	ID=cds-A8144_09365;Parent=gene-A8144_09365;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019737747.1;locus_tag=A8144_09365;product=peroxiredoxin;pseudo=true;transl_table=11
LYPH01000034.1	Genbank	gene	22792	23886	.	-	.	ID=gene-A8144_09370;Name=A8144_09370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09370
LYPH01000034.1	Protein Homology	CDS	22792	23886	.	-	0	ID=cds-OAR20744.1;Parent=gene-A8144_09370;Dbxref=NCBI_GP:OAR20744.1;Name=OAR20744.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908234.1;locus_tag=A8144_09370;product=ionic transporter y4hA;protein_id=OAR20744.1;transl_table=11
LYPH01000034.1	Genbank	gene	24926	25129	.	-	.	ID=gene-A8144_09375;Name=A8144_09375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09375
LYPH01000034.1	GeneMarkS+	CDS	24926	25129	.	-	0	ID=cds-OAR20745.1;Parent=gene-A8144_09375;Dbxref=NCBI_GP:OAR20745.1;Name=OAR20745.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09375;product=hypothetical protein;protein_id=OAR20745.1;transl_table=11
LYPH01000034.1	Genbank	gene	25620	25967	.	-	.	ID=gene-A8144_09380;Name=A8144_09380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09380
LYPH01000034.1	Protein Homology	CDS	25620	25967	.	-	0	ID=cds-OAR20746.1;Parent=gene-A8144_09380;Dbxref=NCBI_GP:OAR20746.1;Name=OAR20746.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9X7C3.1;locus_tag=A8144_09380;product=phosphoribosyl-AMP cyclohydrolase;protein_id=OAR20746.1;transl_table=11
LYPH01000034.1	Genbank	gene	25964	26749	.	-	.	ID=gene-A8144_09385;Name=A8144_09385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09385
LYPH01000034.1	Protein Homology	CDS	25964	26749	.	-	0	ID=cds-OAR20747.1;Parent=gene-A8144_09385;Dbxref=NCBI_GP:OAR20747.1;Name=OAR20747.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9X7C2.1;locus_tag=A8144_09385;product=imidazole glycerol phosphate synthase subunit HisF;protein_id=OAR20747.1;transl_table=11
LYPH01000034.1	Genbank	pseudogene	26736	27549	.	-	.	ID=gene-A8144_09390;Name=A8144_09390;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09390;pseudo=true
LYPH01000034.1	Protein Homology	CDS	26736	27549	.	-	0	ID=cds-A8144_09390;Parent=gene-A8144_09390;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007169682.1;locus_tag=A8144_09390;product=inositol monophosphatase;pseudo=true;transl_table=11
LYPH01000034.1	Genbank	gene	27557	28291	.	-	.	ID=gene-A8144_09395;Name=A8144_09395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09395
LYPH01000034.1	Protein Homology	CDS	27557	28291	.	-	0	ID=cds-OAR20754.1;Parent=gene-A8144_09395;Dbxref=NCBI_GP:OAR20754.1;Name=OAR20754.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CC56.2;locus_tag=A8144_09395;product=bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase/phosphoribosylanthranilate isomerase PriA;protein_id=OAR20754.1;transl_table=11
LYPH01000034.1	Genbank	gene	28304	28924	.	-	.	ID=gene-A8144_09400;Name=A8144_09400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09400
LYPH01000034.1	Protein Homology	CDS	28304	28924	.	-	0	ID=cds-OAR20748.1;Parent=gene-A8144_09400;Dbxref=NCBI_GP:OAR20748.1;Name=OAR20748.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9X7C0.1;locus_tag=A8144_09400;product=imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit;protein_id=OAR20748.1;transl_table=11
LYPH01000034.1	Genbank	gene	28921	29553	.	-	.	ID=gene-A8144_09405;Name=A8144_09405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09405
LYPH01000034.1	Protein Homology	CDS	28921	29553	.	-	0	ID=cds-OAR20749.1;Parent=gene-A8144_09405;Dbxref=NCBI_GP:OAR20749.1;Name=OAR20749.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9X7B9.1;locus_tag=A8144_09405;product=imidazoleglycerol-phosphate dehydratase;protein_id=OAR20749.1;transl_table=11
LYPH01000034.1	Genbank	gene	29550	30683	.	-	.	ID=gene-A8144_09410;Name=A8144_09410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09410
LYPH01000034.1	Protein Homology	CDS	29550	30683	.	-	0	ID=cds-OAR20750.1;Parent=gene-A8144_09410;Dbxref=NCBI_GP:OAR20750.1;Name=OAR20750.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9X7B8.1;locus_tag=A8144_09410;product=histidinol-phosphate transaminase;protein_id=OAR20750.1;transl_table=11
LYPH01000034.1	Genbank	gene	30680	32038	.	-	.	ID=gene-A8144_09415;Name=A8144_09415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09415
LYPH01000034.1	Protein Homology	CDS	30680	32038	.	-	0	ID=cds-OAR20751.1;Parent=gene-A8144_09415;Dbxref=NCBI_GP:OAR20751.1;Name=OAR20751.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014385124.1;locus_tag=A8144_09415;product=histidinol dehydrogenase;protein_id=OAR20751.1;transl_table=11
LYPH01000034.1	Genbank	gene	32776	32982	.	-	.	ID=gene-A8144_09420;Name=A8144_09420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09420
LYPH01000034.1	GeneMarkS+	CDS	32776	32982	.	-	0	ID=cds-OAR20752.1;Parent=gene-A8144_09420;Dbxref=NCBI_GP:OAR20752.1;Name=OAR20752.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09420;product=hypothetical protein;protein_id=OAR20752.1;transl_table=11
LYPH01000034.1	Genbank	gene	32996	33259	.	-	.	ID=gene-A8144_09425;Name=A8144_09425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09425
LYPH01000034.1	GeneMarkS+	CDS	32996	33259	.	-	0	ID=cds-OAR20753.1;Parent=gene-A8144_09425;Dbxref=NCBI_GP:OAR20753.1;Name=OAR20753.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09425;product=hypothetical protein;protein_id=OAR20753.1;transl_table=11
##sequence-region LYPH01000035.1 1 33057
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000035.1	Genbank	region	1	33057	.	+	.	ID=LYPH01000035.1:1..33057;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000035.1	Genbank	gene	32	262	.	-	.	ID=gene-A8144_09430;Name=A8144_09430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09430
LYPH01000035.1	GeneMarkS+	CDS	32	262	.	-	0	ID=cds-OAR20705.1;Parent=gene-A8144_09430;Dbxref=NCBI_GP:OAR20705.1;Name=OAR20705.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09430;product=hypothetical protein;protein_id=OAR20705.1;transl_table=11
LYPH01000035.1	Genbank	gene	1262	1480	.	+	.	ID=gene-A8144_09435;Name=A8144_09435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09435
LYPH01000035.1	GeneMarkS+	CDS	1262	1480	.	+	0	ID=cds-OAR20706.1;Parent=gene-A8144_09435;Dbxref=NCBI_GP:OAR20706.1;Name=OAR20706.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09435;product=hypothetical protein;protein_id=OAR20706.1;transl_table=11
LYPH01000035.1	Genbank	pseudogene	2094	2852	.	-	.	ID=gene-A8144_09440;Name=A8144_09440;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09440;pseudo=true
LYPH01000035.1	Protein Homology	CDS	2094	2852	.	-	0	ID=cds-A8144_09440;Parent=gene-A8144_09440;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012395870.1;locus_tag=A8144_09440;product=3-hydroxy-2-methylbutyryl-CoA dehydrogenase;pseudo=true;transl_table=11
LYPH01000035.1	Genbank	pseudogene	2911	3998	.	-	.	ID=gene-A8144_09445;Name=A8144_09445;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09445;pseudo=true
LYPH01000035.1	Protein Homology	CDS	2911	3998	.	-	0	ID=cds-A8144_09445;Parent=gene-A8144_09445;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015627180.1;locus_tag=A8144_09445;product=carnitine dehydratase;pseudo=true;transl_table=11
LYPH01000035.1	Genbank	gene	4222	4560	.	-	.	ID=gene-A8144_09450;Name=A8144_09450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09450
LYPH01000035.1	GeneMarkS+	CDS	4222	4560	.	-	0	ID=cds-OAR20707.1;Parent=gene-A8144_09450;Dbxref=NCBI_GP:OAR20707.1;Name=OAR20707.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09450;product=hypothetical protein;protein_id=OAR20707.1;transl_table=11
LYPH01000035.1	Genbank	pseudogene	5139	6208	.	+	.	ID=gene-A8144_09455;Name=A8144_09455;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09455;pseudo=true
LYPH01000035.1	Protein Homology	CDS	5139	6208	.	+	0	ID=cds-A8144_09455;Parent=gene-A8144_09455;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012395876.1;locus_tag=A8144_09455;product=stilbene synthase;pseudo=true;transl_table=11
LYPH01000035.1	Genbank	pseudogene	6232	6725	.	+	.	ID=gene-A8144_09460;Name=A8144_09460;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09460;pseudo=true
LYPH01000035.1	Protein Homology	CDS	6232	6725	.	+	0	ID=cds-A8144_09460;Parent=gene-A8144_09460;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015289601.1;locus_tag=A8144_09460;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000035.1	Genbank	pseudogene	6739	7725	.	+	.	ID=gene-A8144_09465;Name=A8144_09465;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09465;pseudo=true
LYPH01000035.1	Protein Homology	CDS	6739	7725	.	+	0	ID=cds-A8144_09465;Parent=gene-A8144_09465;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003405932.1;locus_tag=A8144_09465;product=monooxygenase;pseudo=true;transl_table=11
LYPH01000035.1	Genbank	gene	8811	9008	.	+	.	ID=gene-A8144_09470;Name=A8144_09470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09470
LYPH01000035.1	GeneMarkS+	CDS	8811	9008	.	+	0	ID=cds-OAR20708.1;Parent=gene-A8144_09470;Dbxref=NCBI_GP:OAR20708.1;Name=OAR20708.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09470;product=hypothetical protein;protein_id=OAR20708.1;transl_table=11
LYPH01000035.1	Genbank	gene	9458	9715	.	-	.	ID=gene-A8144_09475;Name=A8144_09475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09475
LYPH01000035.1	Protein Homology	CDS	9458	9715	.	-	0	ID=cds-OAR20709.1;Parent=gene-A8144_09475;Dbxref=NCBI_GP:OAR20709.1;Name=OAR20709.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908049.1;locus_tag=A8144_09475;product=hypothetical protein;protein_id=OAR20709.1;transl_table=11
LYPH01000035.1	Genbank	gene	9753	10217	.	-	.	ID=gene-A8144_09480;Name=A8144_09480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09480
LYPH01000035.1	Protein Homology	CDS	9753	10217	.	-	0	ID=cds-OAR20710.1;Parent=gene-A8144_09480;Dbxref=NCBI_GP:OAR20710.1;Name=OAR20710.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908048.1;locus_tag=A8144_09480;product=hypothetical protein;protein_id=OAR20710.1;transl_table=11
LYPH01000035.1	cmsearch	binding_site	11094	11313	.	+	.	ID=id-LYPH01000035.1:11094..11313;Dbxref=RFAM:RF00174;Note=cobalamin riboswitch;bound_moiety=adenosylcobalamin;gbkey=misc_binding;inference=COORDINATES: profile:INFERNAL:1.1.1
LYPH01000035.1	Genbank	gene	11456	13738	.	+	.	ID=gene-A8144_09485;Name=A8144_09485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09485
LYPH01000035.1	Protein Homology	CDS	11456	13738	.	+	0	ID=cds-OAR20711.1;Parent=gene-A8144_09485;Dbxref=NCBI_GP:OAR20711.1;Name=OAR20711.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O05564.1;locus_tag=A8144_09485;product=5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase;protein_id=OAR20711.1;transl_table=11
LYPH01000035.1	Genbank	gene	14250	14603	.	-	.	ID=gene-A8144_09490;Name=A8144_09490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09490
LYPH01000035.1	Protein Homology	CDS	14250	14603	.	-	0	ID=cds-OAR20712.1;Parent=gene-A8144_09490;Dbxref=NCBI_GP:OAR20712.1;Name=OAR20712.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908046.1;locus_tag=A8144_09490;product=hypothetical protein;protein_id=OAR20712.1;transl_table=11
LYPH01000035.1	Genbank	gene	14845	15276	.	-	.	ID=gene-A8144_09495;Name=A8144_09495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09495
LYPH01000035.1	Protein Homology	CDS	14845	15276	.	-	0	ID=cds-OAR20713.1;Parent=gene-A8144_09495;Dbxref=NCBI_GP:OAR20713.1;Name=OAR20713.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908045.1;locus_tag=A8144_09495;product=hypothetical protein;protein_id=OAR20713.1;transl_table=11
LYPH01000035.1	Genbank	gene	15287	15661	.	+	.	ID=gene-A8144_09500;Name=A8144_09500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09500
LYPH01000035.1	Protein Homology	CDS	15287	15661	.	+	0	ID=cds-OAR20714.1;Parent=gene-A8144_09500;Dbxref=NCBI_GP:OAR20714.1;Name=OAR20714.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908044.1;locus_tag=A8144_09500;product=hypothetical protein;protein_id=OAR20714.1;transl_table=11
LYPH01000035.1	Genbank	gene	15798	16169	.	+	.	ID=gene-A8144_09505;Name=A8144_09505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09505
LYPH01000035.1	GeneMarkS+	CDS	15798	16169	.	+	0	ID=cds-OAR20715.1;Parent=gene-A8144_09505;Dbxref=NCBI_GP:OAR20715.1;Name=OAR20715.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09505;product=hypothetical protein;protein_id=OAR20715.1;transl_table=11
LYPH01000035.1	Genbank	gene	16139	16648	.	-	.	ID=gene-A8144_09510;Name=A8144_09510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09510
LYPH01000035.1	Protein Homology	CDS	16139	16648	.	-	0	ID=cds-OAR20716.1;Parent=gene-A8144_09510;Dbxref=NCBI_GP:OAR20716.1;Name=OAR20716.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908043.1;locus_tag=A8144_09510;product=DoxX family protein;protein_id=OAR20716.1;transl_table=11
LYPH01000035.1	Genbank	gene	16693	18498	.	+	.	ID=gene-A8144_09515;Name=A8144_09515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09515
LYPH01000035.1	Protein Homology	CDS	16693	18498	.	+	0	ID=cds-OAR20717.1;Parent=gene-A8144_09515;Dbxref=NCBI_GP:OAR20717.1;Name=OAR20717.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908042.1;locus_tag=A8144_09515;product=pyruvate%2C phosphate dikinase;protein_id=OAR20717.1;transl_table=11
LYPH01000035.1	Genbank	pseudogene	18495	19099	.	+	.	ID=gene-A8144_09520;Name=A8144_09520;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09520;pseudo=true
LYPH01000035.1	Protein Homology	CDS	18495	19099	.	+	0	ID=cds-A8144_09520;Parent=gene-A8144_09520;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008254409.1;locus_tag=A8144_09520;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000035.1	Genbank	gene	19383	19622	.	-	.	ID=gene-A8144_09525;Name=A8144_09525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09525
LYPH01000035.1	Protein Homology	CDS	19383	19622	.	-	0	ID=cds-OAR20718.1;Parent=gene-A8144_09525;Dbxref=NCBI_GP:OAR20718.1;Name=OAR20718.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908041.1;locus_tag=A8144_09525;product=hypothetical protein;protein_id=OAR20718.1;transl_table=11
LYPH01000035.1	Genbank	gene	20053	20319	.	-	.	ID=gene-A8144_09530;Name=A8144_09530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09530
LYPH01000035.1	GeneMarkS+	CDS	20053	20319	.	-	0	ID=cds-OAR20719.1;Parent=gene-A8144_09530;Dbxref=NCBI_GP:OAR20719.1;Name=OAR20719.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09530;product=hypothetical protein;protein_id=OAR20719.1;transl_table=11
LYPH01000035.1	Genbank	gene	20478	20705	.	-	.	ID=gene-A8144_09535;Name=A8144_09535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09535
LYPH01000035.1	GeneMarkS+	CDS	20478	20705	.	-	0	ID=cds-OAR20720.1;Parent=gene-A8144_09535;Dbxref=NCBI_GP:OAR20720.1;Name=OAR20720.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09535;product=hypothetical protein;protein_id=OAR20720.1;transl_table=11
LYPH01000035.1	Genbank	gene	20706	20897	.	-	.	ID=gene-A8144_09540;Name=A8144_09540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09540
LYPH01000035.1	GeneMarkS+	CDS	20706	20897	.	-	0	ID=cds-OAR20721.1;Parent=gene-A8144_09540;Dbxref=NCBI_GP:OAR20721.1;Name=OAR20721.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09540;product=hypothetical protein;protein_id=OAR20721.1;transl_table=11
LYPH01000035.1	Genbank	pseudogene	21231	22133	.	-	.	ID=gene-A8144_09545;Name=A8144_09545;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09545;pseudo=true
LYPH01000035.1	Protein Homology	CDS	21231	22133	.	-	0	ID=cds-A8144_09545;Parent=gene-A8144_09545;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014381978.1;locus_tag=A8144_09545;product=epoxide hydrolase;pseudo=true;transl_table=11
LYPH01000035.1	Genbank	gene	22160	22360	.	+	.	ID=gene-A8144_09550;Name=A8144_09550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09550
LYPH01000035.1	Protein Homology	CDS	22160	22360	.	+	0	ID=cds-OAR20722.1;Parent=gene-A8144_09550;Dbxref=NCBI_GP:OAR20722.1;Name=OAR20722.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908040.1;locus_tag=A8144_09550;product=hypothetical protein;protein_id=OAR20722.1;transl_table=11
LYPH01000035.1	Genbank	gene	22372	22785	.	+	.	ID=gene-A8144_09555;Name=A8144_09555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09555
LYPH01000035.1	Protein Homology	CDS	22372	22785	.	+	0	ID=cds-OAR20723.1;Parent=gene-A8144_09555;Dbxref=NCBI_GP:OAR20723.1;Name=OAR20723.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908039.1;locus_tag=A8144_09555;product=hypothetical protein;protein_id=OAR20723.1;transl_table=11
LYPH01000035.1	Genbank	pseudogene	22957	23471	.	-	.	ID=gene-A8144_09560;Name=A8144_09560;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09560;pseudo=true
LYPH01000035.1	Protein Homology	CDS	22957	23471	.	-	0	ID=cds-A8144_09560;Parent=gene-A8144_09560;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011892986.1;locus_tag=A8144_09560;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000035.1	Genbank	gene	23738	23995	.	+	.	ID=gene-A8144_09565;Name=A8144_09565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09565
LYPH01000035.1	Protein Homology	CDS	23738	23995	.	+	0	ID=cds-OAR20724.1;Parent=gene-A8144_09565;Dbxref=NCBI_GP:OAR20724.1;Name=OAR20724.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908038.1;locus_tag=A8144_09565;product=hypothetical protein;protein_id=OAR20724.1;transl_table=11
LYPH01000035.1	Genbank	gene	23985	24311	.	-	.	ID=gene-A8144_09570;Name=A8144_09570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09570
LYPH01000035.1	GeneMarkS+	CDS	23985	24311	.	-	0	ID=cds-OAR20725.1;Parent=gene-A8144_09570;Dbxref=NCBI_GP:OAR20725.1;Name=OAR20725.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09570;product=hypothetical protein;protein_id=OAR20725.1;transl_table=11
LYPH01000035.1	Genbank	gene	24962	25282	.	-	.	ID=gene-A8144_09575;Name=A8144_09575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09575
LYPH01000035.1	GeneMarkS+	CDS	24962	25282	.	-	0	ID=cds-OAR20726.1;Parent=gene-A8144_09575;Dbxref=NCBI_GP:OAR20726.1;Name=OAR20726.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09575;product=hypothetical protein;protein_id=OAR20726.1;transl_table=11
LYPH01000035.1	Genbank	gene	26025	26228	.	+	.	ID=gene-A8144_09580;Name=A8144_09580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09580
LYPH01000035.1	GeneMarkS+	CDS	26025	26228	.	+	0	ID=cds-OAR20727.1;Parent=gene-A8144_09580;Dbxref=NCBI_GP:OAR20727.1;Name=OAR20727.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09580;product=hypothetical protein;protein_id=OAR20727.1;transl_table=11
LYPH01000035.1	Genbank	pseudogene	26370	27349	.	-	.	ID=gene-A8144_09585;Name=A8144_09585;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09585;pseudo=true
LYPH01000035.1	Protein Homology	CDS	26370	27349	.	-	0	ID=cds-A8144_09585;Parent=gene-A8144_09585;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014379391.1;locus_tag=A8144_09585;product=6-phosphogluconate dehydrogenase;pseudo=true;transl_table=11
LYPH01000035.1	Genbank	pseudogene	27420	28779	.	-	.	ID=gene-A8144_09590;Name=A8144_09590;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09590;pseudo=true
LYPH01000035.1	Protein Homology	CDS	27420	28779	.	-	0	ID=cds-A8144_09590;Parent=gene-A8144_09590;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020726327.1;locus_tag=A8144_09590;product=glucose-6-phosphate dehydrogenase;pseudo=true;transl_table=11
LYPH01000035.1	Genbank	pseudogene	29284	29953	.	+	.	ID=gene-A8144_09595;Name=A8144_09595;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09595;pseudo=true
LYPH01000035.1	Protein Homology	CDS	29284	29953	.	+	0	ID=cds-A8144_09595;Parent=gene-A8144_09595;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011738534.1;locus_tag=A8144_09595;product=guanylate cyclase;pseudo=true;transl_table=11
LYPH01000035.1	Genbank	pseudogene	29978	30290	.	-	.	ID=gene-A8144_09600;Name=A8144_09600;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09600;pseudo=true
LYPH01000035.1	Protein Homology	CDS	29978	30290	.	-	0	ID=cds-A8144_09600;Parent=gene-A8144_09600;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_017981684.1;locus_tag=A8144_09600;product=antibiotic biosynthesis monooxygenase;pseudo=true;transl_table=11
LYPH01000035.1	Genbank	gene	31085	31327	.	-	.	ID=gene-A8144_09605;Name=A8144_09605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09605
LYPH01000035.1	Protein Homology	CDS	31085	31327	.	-	0	ID=cds-OAR20728.1;Parent=gene-A8144_09605;Dbxref=NCBI_GP:OAR20728.1;Name=OAR20728.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908036.1;locus_tag=A8144_09605;product=hypothetical protein;protein_id=OAR20728.1;transl_table=11
LYPH01000035.1	Genbank	gene	31324	31620	.	-	.	ID=gene-A8144_09610;Name=A8144_09610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09610
LYPH01000035.1	Protein Homology	CDS	31324	31620	.	-	0	ID=cds-OAR20729.1;Parent=gene-A8144_09610;Dbxref=NCBI_GP:OAR20729.1;Name=OAR20729.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908035.1;locus_tag=A8144_09610;product=hypothetical protein;protein_id=OAR20729.1;transl_table=11
LYPH01000035.1	Genbank	gene	32724	33005	.	+	.	ID=gene-A8144_09615;Name=A8144_09615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09615
LYPH01000035.1	GeneMarkS+	CDS	32724	33005	.	+	0	ID=cds-OAR20730.1;Parent=gene-A8144_09615;Dbxref=NCBI_GP:OAR20730.1;Name=OAR20730.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09615;product=hypothetical protein;protein_id=OAR20730.1;transl_table=11
##sequence-region LYPH01000036.1 1 32703
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000036.1	Genbank	region	1	32703	.	+	.	ID=LYPH01000036.1:1..32703;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000036.1	Genbank	gene	350	598	.	-	.	ID=gene-A8144_09620;Name=A8144_09620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09620
LYPH01000036.1	Protein Homology	CDS	350	598	.	-	0	ID=cds-OAR20689.1;Parent=gene-A8144_09620;Dbxref=NCBI_GP:OAR20689.1;Name=OAR20689.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907560.1;locus_tag=A8144_09620;product=hypothetical protein;protein_id=OAR20689.1;transl_table=11
LYPH01000036.1	Genbank	gene	600	797	.	+	.	ID=gene-A8144_09625;Name=A8144_09625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09625
LYPH01000036.1	GeneMarkS+	CDS	600	797	.	+	0	ID=cds-OAR20690.1;Parent=gene-A8144_09625;Dbxref=NCBI_GP:OAR20690.1;Name=OAR20690.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09625;product=hypothetical protein;protein_id=OAR20690.1;transl_table=11
LYPH01000036.1	Genbank	gene	799	1086	.	+	.	ID=gene-A8144_09630;Name=A8144_09630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09630
LYPH01000036.1	GeneMarkS+	CDS	799	1086	.	+	0	ID=cds-OAR20691.1;Parent=gene-A8144_09630;Dbxref=NCBI_GP:OAR20691.1;Name=OAR20691.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09630;product=hypothetical protein;protein_id=OAR20691.1;transl_table=11
LYPH01000036.1	Genbank	gene	2400	2654	.	+	.	ID=gene-A8144_09635;Name=A8144_09635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09635
LYPH01000036.1	Protein Homology	CDS	2400	2654	.	+	0	ID=cds-OAR20692.1;Parent=gene-A8144_09635;Dbxref=NCBI_GP:OAR20692.1;Name=OAR20692.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907559.1;locus_tag=A8144_09635;product=hypothetical protein;protein_id=OAR20692.1;transl_table=11
LYPH01000036.1	Genbank	gene	3110	3493	.	-	.	ID=gene-A8144_09640;Name=A8144_09640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09640
LYPH01000036.1	GeneMarkS+	CDS	3110	3493	.	-	0	ID=cds-OAR20693.1;Parent=gene-A8144_09640;Dbxref=NCBI_GP:OAR20693.1;Name=OAR20693.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09640;product=hypothetical protein;protein_id=OAR20693.1;transl_table=11
LYPH01000036.1	Genbank	gene	4390	10740	.	-	.	ID=gene-A8144_09645;Name=A8144_09645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09645
LYPH01000036.1	Protein Homology	CDS	4390	10740	.	-	0	ID=cds-OAR20694.1;Parent=gene-A8144_09645;Dbxref=NCBI_GP:OAR20694.1;Name=OAR20694.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907558.1;locus_tag=A8144_09645;product=polyketide synthase;protein_id=OAR20694.1;transl_table=11
LYPH01000036.1	Genbank	gene	11209	12948	.	+	.	ID=gene-A8144_09650;Name=A8144_09650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09650
LYPH01000036.1	Protein Homology	CDS	11209	12948	.	+	0	ID=cds-OAR20695.1;Parent=gene-A8144_09650;Dbxref=NCBI_GP:OAR20695.1;Name=OAR20695.1;Note=activates fatty acids by binding to coenzyme A;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907557.1;locus_tag=A8144_09650;product=acyl-CoA synthetase;protein_id=OAR20695.1;transl_table=11
LYPH01000036.1	Genbank	gene	13000	15708	.	+	.	ID=gene-A8144_09655;Name=A8144_09655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09655
LYPH01000036.1	Protein Homology	CDS	13000	15708	.	+	0	ID=cds-OAR20696.1;Parent=gene-A8144_09655;Dbxref=NCBI_GP:OAR20696.1;Name=OAR20696.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907556.1;locus_tag=A8144_09655;product=hypothetical protein;protein_id=OAR20696.1;transl_table=11
LYPH01000036.1	Genbank	gene	15709	16410	.	-	.	ID=gene-A8144_09660;Name=A8144_09660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09660
LYPH01000036.1	Protein Homology	CDS	15709	16410	.	-	0	ID=cds-OAR20697.1;Parent=gene-A8144_09660;Dbxref=NCBI_GP:OAR20697.1;Name=OAR20697.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CD80.1;locus_tag=A8144_09660;product=hypothetical protein;protein_id=OAR20697.1;transl_table=11
LYPH01000036.1	Genbank	gene	16477	22788	.	-	.	ID=gene-A8144_09665;Name=A8144_09665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09665
LYPH01000036.1	Protein Homology	CDS	16477	22788	.	-	0	ID=cds-OAR20698.1;Parent=gene-A8144_09665;Dbxref=NCBI_GP:OAR20698.1;Name=OAR20698.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907554.1;locus_tag=A8144_09665;product=polyketide synthase;protein_id=OAR20698.1;transl_table=11
LYPH01000036.1	Genbank	gene	22811	24934	.	-	.	ID=gene-A8144_09670;Name=A8144_09670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09670
LYPH01000036.1	Protein Homology	CDS	22811	24934	.	-	0	ID=cds-OAR20699.1;Parent=gene-A8144_09670;Dbxref=NCBI_GP:OAR20699.1;Name=OAR20699.1;Note=activates fatty acids by binding to coenzyme A;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907553.1;locus_tag=A8144_09670;product=acyl-CoA synthetase;protein_id=OAR20699.1;transl_table=11
LYPH01000036.1	Genbank	gene	25073	25705	.	-	.	ID=gene-A8144_09675;Name=A8144_09675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09675
LYPH01000036.1	Protein Homology	CDS	25073	25705	.	-	0	ID=cds-OAR20700.1;Parent=gene-A8144_09675;Dbxref=NCBI_GP:OAR20700.1;Name=OAR20700.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CD83.1;locus_tag=A8144_09675;product=chorismate--pyruvate lyase;protein_id=OAR20700.1;transl_table=11
LYPH01000036.1	Genbank	gene	25749	27608	.	-	.	ID=gene-A8144_09680;Name=A8144_09680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09680
LYPH01000036.1	Protein Homology	CDS	25749	27608	.	-	0	ID=cds-OAR20701.1;Parent=gene-A8144_09680;Dbxref=NCBI_GP:OAR20701.1;Name=OAR20701.1;Note=activates fatty acids by binding to coenzyme A;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015355156.1;locus_tag=A8144_09680;product=acyl-CoA synthetase;protein_id=OAR20701.1;transl_table=11
LYPH01000036.1	Genbank	gene	28372	29520	.	-	.	ID=gene-A8144_09685;Name=A8144_09685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09685
LYPH01000036.1	Protein Homology	CDS	28372	29520	.	-	0	ID=cds-OAR20702.1;Parent=gene-A8144_09685;Dbxref=NCBI_GP:OAR20702.1;Name=OAR20702.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CD85.1;locus_tag=A8144_09685;product=photosystem I reaction center subunit VIII;protein_id=OAR20702.1;transl_table=11
LYPH01000036.1	Genbank	gene	29683	30495	.	+	.	ID=gene-A8144_09690;Name=A8144_09690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09690
LYPH01000036.1	Protein Homology	CDS	29683	30495	.	+	0	ID=cds-OAR20703.1;Parent=gene-A8144_09690;Dbxref=NCBI_GP:OAR20703.1;Name=OAR20703.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CD86.1;locus_tag=A8144_09690;product=SAM-dependent methyltransferase;protein_id=OAR20703.1;transl_table=11
LYPH01000036.1	Genbank	gene	30535	31791	.	+	.	ID=gene-A8144_09695;Name=A8144_09695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09695
LYPH01000036.1	Protein Homology	CDS	30535	31791	.	+	0	ID=cds-OAR20704.1;Parent=gene-A8144_09695;Dbxref=NCBI_GP:OAR20704.1;Name=OAR20704.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q7TXK2.1;locus_tag=A8144_09695;product=enoyl-ACP reductase;protein_id=OAR20704.1;transl_table=11
LYPH01000036.1	Genbank	pseudogene	32038	32703	.	-	.	ID=gene-A8144_09700;Name=A8144_09700;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09700;pseudo=true
LYPH01000036.1	Protein Homology	CDS	32038	32703	.	-	0	ID=cds-A8144_09700;Parent=gene-A8144_09700;Note=incomplete%3B too short partial abutting assembly gap%3B missing start;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907547.1;locus_tag=A8144_09700;product=glycosyl transferase family 1;pseudo=true;transl_table=11
##sequence-region LYPH01000037.1 1 31693
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000037.1	Genbank	region	1	31693	.	+	.	ID=LYPH01000037.1:1..31693;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000037.1	Genbank	pseudogene	401	1162	.	+	.	ID=gene-A8144_09705;Name=A8144_09705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09705;pseudo=true
LYPH01000037.1	Protein Homology	CDS	401	1162	.	+	0	ID=cds-A8144_09705;Parent=gene-A8144_09705;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020101366.1;locus_tag=A8144_09705;product=enoyl-CoA hydratase;pseudo=true;transl_table=11
LYPH01000037.1	Genbank	pseudogene	1709	2046	.	-	.	ID=gene-A8144_09710;Name=A8144_09710;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09710;pseudo=true
LYPH01000037.1	Protein Homology	CDS	1709	2046	.	-	0	ID=cds-A8144_09710;Parent=gene-A8144_09710;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003403448.1;locus_tag=A8144_09710;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000037.1	Genbank	gene	2747	3085	.	+	.	ID=gene-A8144_09715;Name=A8144_09715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09715
LYPH01000037.1	GeneMarkS+	CDS	2747	3085	.	+	0	ID=cds-OAR20661.1;Parent=gene-A8144_09715;Dbxref=NCBI_GP:OAR20661.1;Name=OAR20661.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09715;product=hypothetical protein;protein_id=OAR20661.1;transl_table=11
LYPH01000037.1	Genbank	gene	4451	4645	.	-	.	ID=gene-A8144_09720;Name=A8144_09720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09720
LYPH01000037.1	GeneMarkS+	CDS	4451	4645	.	-	0	ID=cds-OAR20662.1;Parent=gene-A8144_09720;Dbxref=NCBI_GP:OAR20662.1;Name=OAR20662.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09720;product=hypothetical protein;protein_id=OAR20662.1;transl_table=11
LYPH01000037.1	Genbank	gene	4958	5332	.	+	.	ID=gene-A8144_09725;Name=A8144_09725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09725
LYPH01000037.1	Protein Homology	CDS	4958	5332	.	+	0	ID=cds-OAR20663.1;Parent=gene-A8144_09725;Dbxref=NCBI_GP:OAR20663.1;Name=OAR20663.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007078642.1;locus_tag=A8144_09725;product=30S ribosomal protein S12;protein_id=OAR20663.1;transl_table=11
LYPH01000037.1	Genbank	gene	5332	5802	.	+	.	ID=gene-A8144_09730;Name=A8144_09730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09730
LYPH01000037.1	Protein Homology	CDS	5332	5802	.	+	0	ID=cds-OAR20664.1;Parent=gene-A8144_09730;Dbxref=NCBI_GP:OAR20664.1;Name=OAR20664.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_006245075.1;locus_tag=A8144_09730;product=30S ribosomal protein S7;protein_id=OAR20664.1;transl_table=11
LYPH01000037.1	Genbank	gene	5896	8001	.	+	.	ID=gene-A8144_09735;Name=A8144_09735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09735
LYPH01000037.1	Protein Homology	CDS	5896	8001	.	+	0	ID=cds-OAR20665.1;Parent=gene-A8144_09735;Dbxref=NCBI_GP:OAR20665.1;Name=OAR20665.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014383304.1;locus_tag=A8144_09735;product=translation elongation factor G;protein_id=OAR20665.1;transl_table=11
LYPH01000037.1	Genbank	gene	8110	9300	.	+	.	ID=gene-A8144_09740;Name=A8144_09740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09740
LYPH01000037.1	Protein Homology	CDS	8110	9300	.	+	0	ID=cds-OAR20666.1;Parent=gene-A8144_09740;Dbxref=NCBI_GP:OAR20666.1;Name=OAR20666.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_006552255.1;locus_tag=A8144_09740;product=translation elongation factor Tu;protein_id=OAR20666.1;transl_table=11
LYPH01000037.1	Genbank	pseudogene	9452	10295	.	+	.	ID=gene-A8144_09745;Name=A8144_09745;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09745;pseudo=true
LYPH01000037.1	Protein Homology	CDS	9452	10295	.	+	0	ID=cds-A8144_09745;Parent=gene-A8144_09745;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009979115.1;locus_tag=A8144_09745;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000037.1	Genbank	gene	11567	11914	.	+	.	ID=gene-A8144_09750;Name=A8144_09750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09750
LYPH01000037.1	GeneMarkS+	CDS	11567	11914	.	+	0	ID=cds-OAR20667.1;Parent=gene-A8144_09750;Dbxref=NCBI_GP:OAR20667.1;Name=OAR20667.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09750;product=hypothetical protein;protein_id=OAR20667.1;transl_table=11
LYPH01000037.1	Genbank	pseudogene	14065	15210	.	+	.	ID=gene-A8144_09755;Name=A8144_09755;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09755;pseudo=true
LYPH01000037.1	Protein Homology	CDS	14065	15210	.	+	0	ID=cds-A8144_09755;Parent=gene-A8144_09755;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005625400.1;locus_tag=A8144_09755;product=mycofactocin radical SAM maturase;pseudo=true;transl_table=11
LYPH01000037.1	Genbank	pseudogene	15214	16363	.	+	.	ID=gene-A8144_09760;Name=A8144_09760;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09760;pseudo=true
LYPH01000037.1	Protein Homology	CDS	15214	16363	.	+	0	ID=cds-A8144_09760;Parent=gene-A8144_09760;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003879437.1;locus_tag=A8144_09760;product=alpha-hydroxy-acid oxidizing enzyme;pseudo=true;transl_table=11
LYPH01000037.1	Genbank	gene	16404	16640	.	-	.	ID=gene-A8144_09765;Name=A8144_09765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09765
LYPH01000037.1	GeneMarkS+	CDS	16404	16640	.	-	0	ID=cds-OAR20668.1;Parent=gene-A8144_09765;Dbxref=NCBI_GP:OAR20668.1;Name=OAR20668.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09765;product=hypothetical protein;protein_id=OAR20668.1;transl_table=11
LYPH01000037.1	Genbank	gene	17955	18257	.	+	.	ID=gene-A8144_09770;Name=A8144_09770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09770
LYPH01000037.1	GeneMarkS+	CDS	17955	18257	.	+	0	ID=cds-OAR20669.1;Parent=gene-A8144_09770;Dbxref=NCBI_GP:OAR20669.1;Name=OAR20669.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09770;product=hypothetical protein;protein_id=OAR20669.1;transl_table=11
LYPH01000037.1	Genbank	gene	18282	18944	.	+	.	ID=gene-A8144_09775;Name=A8144_09775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09775
LYPH01000037.1	GeneMarkS+	CDS	18282	18944	.	+	0	ID=cds-OAR20670.1;Parent=gene-A8144_09775;Dbxref=NCBI_GP:OAR20670.1;Name=OAR20670.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09775;product=hypothetical protein;protein_id=OAR20670.1;transl_table=11
LYPH01000037.1	Genbank	gene	19775	19987	.	+	.	ID=gene-A8144_09780;Name=A8144_09780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09780
LYPH01000037.1	GeneMarkS+	CDS	19775	19987	.	+	0	ID=cds-OAR20671.1;Parent=gene-A8144_09780;Dbxref=NCBI_GP:OAR20671.1;Name=OAR20671.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09780;product=hypothetical protein;protein_id=OAR20671.1;transl_table=11
LYPH01000037.1	Genbank	gene	20766	20963	.	-	.	ID=gene-A8144_09785;Name=A8144_09785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09785
LYPH01000037.1	GeneMarkS+	CDS	20766	20963	.	-	0	ID=cds-OAR20672.1;Parent=gene-A8144_09785;Dbxref=NCBI_GP:OAR20672.1;Name=OAR20672.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09785;product=hypothetical protein;protein_id=OAR20672.1;transl_table=11
LYPH01000037.1	Genbank	gene	21185	21490	.	+	.	ID=gene-A8144_09790;Name=A8144_09790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09790
LYPH01000037.1	Protein Homology	CDS	21185	21490	.	+	0	ID=cds-OAR20673.1;Parent=gene-A8144_09790;Dbxref=NCBI_GP:OAR20673.1;Name=OAR20673.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:A4FPM6.1;locus_tag=A8144_09790;product=30S ribosomal protein S10;protein_id=OAR20673.1;transl_table=11
LYPH01000037.1	Genbank	gene	21506	22159	.	+	.	ID=gene-A8144_09795;Name=A8144_09795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09795
LYPH01000037.1	Protein Homology	CDS	21506	22159	.	+	0	ID=cds-OAR20674.1;Parent=gene-A8144_09795;Dbxref=NCBI_GP:OAR20674.1;Name=OAR20674.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019514044.1;locus_tag=A8144_09795;product=50S ribosomal protein L3;protein_id=OAR20674.1;transl_table=11
LYPH01000037.1	Genbank	gene	22159	22851	.	+	.	ID=gene-A8144_09800;Name=A8144_09800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09800
LYPH01000037.1	Protein Homology	CDS	22159	22851	.	+	0	ID=cds-OAR20675.1;Parent=gene-A8144_09800;Dbxref=NCBI_GP:OAR20675.1;Name=OAR20675.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O32982.1;locus_tag=A8144_09800;product=50S ribosomal protein L4;protein_id=OAR20675.1;transl_table=11
LYPH01000037.1	Genbank	gene	22851	23153	.	+	.	ID=gene-A8144_09805;Name=A8144_09805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09805
LYPH01000037.1	Protein Homology	CDS	22851	23153	.	+	0	ID=cds-OAR20676.1;Parent=gene-A8144_09805;Dbxref=NCBI_GP:OAR20676.1;Name=OAR20676.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003886862.1;locus_tag=A8144_09805;product=50S ribosomal protein L23;protein_id=OAR20676.1;transl_table=11
LYPH01000037.1	Genbank	gene	23183	24025	.	+	.	ID=gene-A8144_09810;Name=A8144_09810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09810
LYPH01000037.1	Protein Homology	CDS	23183	24025	.	+	0	ID=cds-OAR20677.1;Parent=gene-A8144_09810;Dbxref=NCBI_GP:OAR20677.1;Name=OAR20677.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q73SB1.1;locus_tag=A8144_09810;product=50S ribosomal protein L2;protein_id=OAR20677.1;transl_table=11
LYPH01000037.1	Genbank	gene	24049	24330	.	+	.	ID=gene-A8144_09815;Name=A8144_09815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09815
LYPH01000037.1	Protein Homology	CDS	24049	24330	.	+	0	ID=cds-OAR20678.1;Parent=gene-A8144_09815;Dbxref=NCBI_GP:OAR20678.1;Name=OAR20678.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908582.1;locus_tag=A8144_09815;product=30S ribosomal protein S19;protein_id=OAR20678.1;transl_table=11
LYPH01000037.1	Genbank	gene	24327	24854	.	+	.	ID=gene-A8144_09820;Name=A8144_09820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09820
LYPH01000037.1	Protein Homology	CDS	24327	24854	.	+	0	ID=cds-OAR20679.1;Parent=gene-A8144_09820;Dbxref=NCBI_GP:OAR20679.1;Name=OAR20679.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O32986.1;locus_tag=A8144_09820;product=50S ribosomal protein L22;protein_id=OAR20679.1;transl_table=11
LYPH01000037.1	Genbank	gene	24854	25699	.	+	.	ID=gene-A8144_09825;Name=A8144_09825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09825
LYPH01000037.1	Protein Homology	CDS	24854	25699	.	+	0	ID=cds-OAR20680.1;Parent=gene-A8144_09825;Dbxref=NCBI_GP:OAR20680.1;Name=OAR20680.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908580.1;locus_tag=A8144_09825;product=30S ribosomal protein S3;protein_id=OAR20680.1;transl_table=11
LYPH01000037.1	Genbank	gene	25703	26119	.	+	.	ID=gene-A8144_09830;Name=A8144_09830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09830
LYPH01000037.1	Protein Homology	CDS	25703	26119	.	+	0	ID=cds-OAR20681.1;Parent=gene-A8144_09830;Dbxref=NCBI_GP:OAR20681.1;Name=OAR20681.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020101406.1;locus_tag=A8144_09830;product=50S ribosomal protein L16;protein_id=OAR20681.1;transl_table=11
LYPH01000037.1	Genbank	gene	26119	26361	.	+	.	ID=gene-A8144_09835;Name=A8144_09835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09835
LYPH01000037.1	Protein Homology	CDS	26119	26361	.	+	0	ID=cds-OAR20682.1;Parent=gene-A8144_09835;Dbxref=NCBI_GP:OAR20682.1;Name=OAR20682.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:A0QSD9.1;locus_tag=A8144_09835;product=50S ribosomal protein L29;protein_id=OAR20682.1;transl_table=11
LYPH01000037.1	Genbank	gene	26358	26741	.	+	.	ID=gene-A8144_09840;Name=A8144_09840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09840
LYPH01000037.1	Protein Homology	CDS	26358	26741	.	+	0	ID=cds-OAR20683.1;Parent=gene-A8144_09840;Dbxref=NCBI_GP:OAR20683.1;Name=OAR20683.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908577.1;locus_tag=A8144_09840;product=30S ribosomal protein S17;protein_id=OAR20683.1;transl_table=11
LYPH01000037.1	Genbank	gene	27477	27788	.	+	.	ID=gene-A8144_09845;Name=A8144_09845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09845
LYPH01000037.1	GeneMarkS+	CDS	27477	27788	.	+	0	ID=cds-OAR20684.1;Parent=gene-A8144_09845;Dbxref=NCBI_GP:OAR20684.1;Name=OAR20684.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09845;product=hypothetical protein;protein_id=OAR20684.1;transl_table=11
LYPH01000037.1	Genbank	gene	28034	28279	.	+	.	ID=gene-A8144_09850;Name=A8144_09850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09850
LYPH01000037.1	GeneMarkS+	CDS	28034	28279	.	+	0	ID=cds-OAR20685.1;Parent=gene-A8144_09850;Dbxref=NCBI_GP:OAR20685.1;Name=OAR20685.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09850;product=hypothetical protein;protein_id=OAR20685.1;transl_table=11
LYPH01000037.1	Genbank	gene	28295	28492	.	+	.	ID=gene-A8144_09855;Name=A8144_09855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09855
LYPH01000037.1	GeneMarkS+	CDS	28295	28492	.	+	0	ID=cds-OAR20686.1;Parent=gene-A8144_09855;Dbxref=NCBI_GP:OAR20686.1;Name=OAR20686.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09855;product=hypothetical protein;protein_id=OAR20686.1;transl_table=11
LYPH01000037.1	Genbank	gene	29061	29345	.	+	.	ID=gene-A8144_09860;Name=A8144_09860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09860
LYPH01000037.1	GeneMarkS+	CDS	29061	29345	.	+	0	ID=cds-OAR20687.1;Parent=gene-A8144_09860;Dbxref=NCBI_GP:OAR20687.1;Name=OAR20687.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09860;product=hypothetical protein;protein_id=OAR20687.1;transl_table=11
LYPH01000037.1	Genbank	pseudogene	29480	30304	.	+	.	ID=gene-A8144_09865;Name=A8144_09865;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09865;pseudo=true
LYPH01000037.1	Protein Homology	CDS	29480	30304	.	+	0	ID=cds-A8144_09865;Parent=gene-A8144_09865;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011854817.1;locus_tag=A8144_09865;product=sulfatase-modifying factor 1;pseudo=true;transl_table=11
LYPH01000037.1	Genbank	gene	30880	31251	.	-	.	ID=gene-A8144_09870;Name=A8144_09870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09870
LYPH01000037.1	GeneMarkS+	CDS	30880	31251	.	-	0	ID=cds-OAR20688.1;Parent=gene-A8144_09870;Dbxref=NCBI_GP:OAR20688.1;Name=OAR20688.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09870;product=hypothetical protein;protein_id=OAR20688.1;transl_table=11
##sequence-region LYPH01000038.1 1 31653
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000038.1	Genbank	region	1	31653	.	+	.	ID=LYPH01000038.1:1..31653;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000038.1	Genbank	gene	1840	2292	.	+	.	ID=gene-A8144_09875;Name=A8144_09875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09875
LYPH01000038.1	GeneMarkS+	CDS	1840	2292	.	+	0	ID=cds-OAR20640.1;Parent=gene-A8144_09875;Dbxref=NCBI_GP:OAR20640.1;Name=OAR20640.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09875;product=hypothetical protein;protein_id=OAR20640.1;transl_table=11
LYPH01000038.1	Genbank	pseudogene	2444	3330	.	+	.	ID=gene-A8144_09880;Name=A8144_09880;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09880;pseudo=true
LYPH01000038.1	Protein Homology	CDS	2444	3330	.	+	0	ID=cds-A8144_09880;Parent=gene-A8144_09880;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020218520.1;locus_tag=A8144_09880;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000038.1	Genbank	gene	4160	5824	.	-	.	ID=gene-A8144_09885;Name=A8144_09885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09885
LYPH01000038.1	Protein Homology	CDS	4160	5824	.	-	0	ID=cds-OAR20641.1;Parent=gene-A8144_09885;Dbxref=NCBI_GP:OAR20641.1;Name=OAR20641.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907561.1;locus_tag=A8144_09885;product=glucose-6-phosphate isomerase;protein_id=OAR20641.1;transl_table=11
LYPH01000038.1	Genbank	gene	6185	6457	.	-	.	ID=gene-A8144_09890;Name=A8144_09890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09890
LYPH01000038.1	Protein Homology	CDS	6185	6457	.	-	0	ID=cds-OAR20642.1;Parent=gene-A8144_09890;Dbxref=NCBI_GP:OAR20642.1;Name=OAR20642.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008254002.1;locus_tag=A8144_09890;product=chorismate mutase;protein_id=OAR20642.1;transl_table=11
LYPH01000038.1	Genbank	gene	7011	7199	.	+	.	ID=gene-A8144_09895;Name=A8144_09895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09895
LYPH01000038.1	Protein Homology	CDS	7011	7199	.	+	0	ID=cds-OAR20643.1;Parent=gene-A8144_09895;Dbxref=NCBI_GP:OAR20643.1;Name=OAR20643.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907563.1;locus_tag=A8144_09895;product=hypothetical protein;protein_id=OAR20643.1;transl_table=11
LYPH01000038.1	Genbank	gene	7282	9618	.	+	.	ID=gene-A8144_09900;Name=A8144_09900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09900
LYPH01000038.1	Protein Homology	CDS	7282	9618	.	+	0	ID=cds-OAR20644.1;Parent=gene-A8144_09900;Dbxref=NCBI_GP:OAR20644.1;Name=OAR20644.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007777004.1;locus_tag=A8144_09900;product=ATP-dependent DNA helicase PcrA;protein_id=OAR20644.1;transl_table=11
LYPH01000038.1	Genbank	gene	10170	11171	.	-	.	ID=gene-A8144_09905;Name=A8144_09905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09905
LYPH01000038.1	Protein Homology	CDS	10170	11171	.	-	0	ID=cds-OAR20645.1;Parent=gene-A8144_09905;Dbxref=NCBI_GP:OAR20645.1;Name=OAR20645.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907565.1;locus_tag=A8144_09905;product=hypothetical protein;protein_id=OAR20645.1;transl_table=11
LYPH01000038.1	Genbank	gene	11468	12649	.	+	.	ID=gene-A8144_09910;Name=A8144_09910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09910
LYPH01000038.1	Protein Homology	CDS	11468	12649	.	+	0	ID=cds-OAR20646.1;Parent=gene-A8144_09910;Dbxref=NCBI_GP:OAR20646.1;Name=OAR20646.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9Z5H8.1;locus_tag=A8144_09910;product=succinate--CoA ligase subunit beta;protein_id=OAR20646.1;transl_table=11
LYPH01000038.1	Genbank	gene	12669	13571	.	+	.	ID=gene-A8144_09915;Name=A8144_09915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09915
LYPH01000038.1	Protein Homology	CDS	12669	13571	.	+	0	ID=cds-OAR20647.1;Parent=gene-A8144_09915;Dbxref=NCBI_GP:OAR20647.1;Name=OAR20647.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019736319.1;locus_tag=A8144_09915;product=succinate--CoA ligase subunit alpha;protein_id=OAR20647.1;transl_table=11
LYPH01000038.1	Genbank	pseudogene	13598	14462	.	-	.	ID=gene-A8144_09920;Name=A8144_09920;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09920;pseudo=true
LYPH01000038.1	Protein Homology	CDS	13598	14462	.	-	0	ID=cds-A8144_09920;Parent=gene-A8144_09920;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015309059.1;locus_tag=A8144_09920;product=LLM class F420-dependent oxidoreductase;pseudo=true;transl_table=11
LYPH01000038.1	Genbank	gene	14718	15611	.	+	.	ID=gene-A8144_09925;Name=A8144_09925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09925
LYPH01000038.1	Protein Homology	CDS	14718	15611	.	+	0	ID=cds-OAR20648.1;Parent=gene-A8144_09925;Dbxref=NCBI_GP:OAR20648.1;Name=OAR20648.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012396095.1;locus_tag=A8144_09925;product=hypothetical protein;protein_id=OAR20648.1;transl_table=11
LYPH01000038.1	Genbank	gene	15660	16952	.	+	.	ID=gene-A8144_09930;Name=A8144_09930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09930
LYPH01000038.1	Protein Homology	CDS	15660	16952	.	+	0	ID=cds-OAR20649.1;Parent=gene-A8144_09930;Dbxref=NCBI_GP:OAR20649.1;Name=OAR20649.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907569.1;locus_tag=A8144_09930;product=hypothetical protein;protein_id=OAR20649.1;transl_table=11
LYPH01000038.1	Genbank	gene	16982	17629	.	+	.	ID=gene-A8144_09935;Name=A8144_09935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09935
LYPH01000038.1	Protein Homology	CDS	16982	17629	.	+	0	ID=cds-OAR20650.1;Parent=gene-A8144_09935;Dbxref=NCBI_GP:OAR20650.1;Name=OAR20650.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907570.1;locus_tag=A8144_09935;product=phosphoribosylglycinamide formyltransferase;protein_id=OAR20650.1;transl_table=11
LYPH01000038.1	Genbank	gene	17626	19209	.	+	.	ID=gene-A8144_09940;Name=A8144_09940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09940
LYPH01000038.1	Protein Homology	CDS	17626	19209	.	+	0	ID=cds-OAR20651.1;Parent=gene-A8144_09940;Dbxref=NCBI_GP:OAR20651.1;Name=OAR20651.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9RAJ5.2;locus_tag=A8144_09940;product=bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase;protein_id=OAR20651.1;transl_table=11
LYPH01000038.1	Genbank	gene	20018	20296	.	-	.	ID=gene-A8144_09945;Name=A8144_09945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09945
LYPH01000038.1	Protein Homology	CDS	20018	20296	.	-	0	ID=cds-OAR20652.1;Parent=gene-A8144_09945;Dbxref=NCBI_GP:OAR20652.1;Name=OAR20652.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907572.1;locus_tag=A8144_09945;product=hypothetical protein;protein_id=OAR20652.1;transl_table=11
LYPH01000038.1	Genbank	gene	20501	20722	.	+	.	ID=gene-A8144_09950;Name=A8144_09950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09950
LYPH01000038.1	GeneMarkS+	CDS	20501	20722	.	+	0	ID=cds-OAR20653.1;Parent=gene-A8144_09950;Dbxref=NCBI_GP:OAR20653.1;Name=OAR20653.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09950;product=hypothetical protein;protein_id=OAR20653.1;transl_table=11
LYPH01000038.1	Genbank	gene	22330	22512	.	+	.	ID=gene-A8144_09955;Name=A8144_09955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09955
LYPH01000038.1	GeneMarkS+	CDS	22330	22512	.	+	0	ID=cds-OAR20654.1;Parent=gene-A8144_09955;Dbxref=NCBI_GP:OAR20654.1;Name=OAR20654.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09955;product=hypothetical protein;protein_id=OAR20654.1;transl_table=11
LYPH01000038.1	Genbank	gene	26063	26392	.	-	.	ID=gene-A8144_09960;Name=A8144_09960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09960
LYPH01000038.1	GeneMarkS+	CDS	26063	26392	.	-	0	ID=cds-OAR20655.1;Parent=gene-A8144_09960;Dbxref=NCBI_GP:OAR20655.1;Name=OAR20655.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09960;product=hypothetical protein;protein_id=OAR20655.1;transl_table=11
LYPH01000038.1	Genbank	pseudogene	27155	27763	.	+	.	ID=gene-A8144_09965;Name=A8144_09965;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_09965;pseudo=true
LYPH01000038.1	Protein Homology	CDS	27155	27763	.	+	0	ID=cds-A8144_09965;Parent=gene-A8144_09965;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014379284.1;locus_tag=A8144_09965;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000038.1	Genbank	gene	27947	28549	.	+	.	ID=gene-A8144_09970;Name=A8144_09970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09970
LYPH01000038.1	Protein Homology	CDS	27947	28549	.	+	0	ID=cds-OAR20656.1;Parent=gene-A8144_09970;Dbxref=NCBI_GP:OAR20656.1;Name=OAR20656.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907573.1;locus_tag=A8144_09970;product=hypothetical protein;protein_id=OAR20656.1;transl_table=11
LYPH01000038.1	Genbank	gene	28670	28882	.	+	.	ID=gene-A8144_09975;Name=A8144_09975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09975
LYPH01000038.1	GeneMarkS+	CDS	28670	28882	.	+	0	ID=cds-OAR20657.1;Parent=gene-A8144_09975;Dbxref=NCBI_GP:OAR20657.1;Name=OAR20657.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09975;product=hypothetical protein;protein_id=OAR20657.1;transl_table=11
LYPH01000038.1	Genbank	gene	29133	29312	.	-	.	ID=gene-A8144_09980;Name=A8144_09980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09980
LYPH01000038.1	GeneMarkS+	CDS	29133	29312	.	-	0	ID=cds-OAR20658.1;Parent=gene-A8144_09980;Dbxref=NCBI_GP:OAR20658.1;Name=OAR20658.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09980;product=hypothetical protein;protein_id=OAR20658.1;transl_table=11
LYPH01000038.1	Genbank	gene	29623	29862	.	+	.	ID=gene-A8144_09985;Name=A8144_09985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09985
LYPH01000038.1	GeneMarkS+	CDS	29623	29862	.	+	0	ID=cds-OAR20659.1;Parent=gene-A8144_09985;Dbxref=NCBI_GP:OAR20659.1;Name=OAR20659.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09985;product=hypothetical protein;protein_id=OAR20659.1;transl_table=11
LYPH01000038.1	Genbank	gene	30260	30454	.	+	.	ID=gene-A8144_09990;Name=A8144_09990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09990
LYPH01000038.1	GeneMarkS+	CDS	30260	30454	.	+	0	ID=cds-OAR20660.1;Parent=gene-A8144_09990;Dbxref=NCBI_GP:OAR20660.1;Name=OAR20660.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_09990;product=hypothetical protein;protein_id=OAR20660.1;transl_table=11
##sequence-region LYPH01000039.1 1 30633
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000039.1	Genbank	region	1	30633	.	+	.	ID=LYPH01000039.1:1..30633;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000039.1	Genbank	gene	83	559	.	+	.	ID=gene-A8144_09995;Name=A8144_09995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_09995
LYPH01000039.1	Protein Homology	CDS	83	559	.	+	0	ID=cds-OAR20612.1;Parent=gene-A8144_09995;Dbxref=NCBI_GP:OAR20612.1;Name=OAR20612.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907726.1;locus_tag=A8144_09995;product=hypothetical protein;protein_id=OAR20612.1;transl_table=11
LYPH01000039.1	Genbank	gene	763	1035	.	+	.	ID=gene-A8144_10000;Name=A8144_10000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10000
LYPH01000039.1	Protein Homology	CDS	763	1035	.	+	0	ID=cds-OAR20613.1;Parent=gene-A8144_10000;Dbxref=NCBI_GP:OAR20613.1;Name=OAR20613.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907727.1;locus_tag=A8144_10000;product=hypothetical protein;protein_id=OAR20613.1;transl_table=11
LYPH01000039.1	Genbank	gene	2467	2754	.	-	.	ID=gene-A8144_10005;Name=A8144_10005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10005
LYPH01000039.1	GeneMarkS+	CDS	2467	2754	.	-	0	ID=cds-OAR20614.1;Parent=gene-A8144_10005;Dbxref=NCBI_GP:OAR20614.1;Name=OAR20614.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10005;product=hypothetical protein;protein_id=OAR20614.1;transl_table=11
LYPH01000039.1	Genbank	gene	2964	3887	.	-	.	ID=gene-A8144_10010;Name=A8144_10010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10010
LYPH01000039.1	Protein Homology	CDS	2964	3887	.	-	0	ID=cds-OAR20615.1;Parent=gene-A8144_10010;Dbxref=NCBI_GP:OAR20615.1;Name=OAR20615.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003919974.1;locus_tag=A8144_10010;product=pyridoxal biosynthesis lyase PdxS;protein_id=OAR20615.1;transl_table=11
LYPH01000039.1	Genbank	gene	3962	5011	.	-	.	ID=gene-A8144_10015;Name=A8144_10015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10015
LYPH01000039.1	Protein Homology	CDS	3962	5011	.	-	0	ID=cds-OAR20616.1;Parent=gene-A8144_10015;Dbxref=NCBI_GP:OAR20616.1;Name=OAR20616.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907729.1;locus_tag=A8144_10015;product=exopolyphosphatase;protein_id=OAR20616.1;transl_table=11
LYPH01000039.1	Genbank	gene	5011	6135	.	-	.	ID=gene-A8144_10020;Name=A8144_10020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10020
LYPH01000039.1	Protein Homology	CDS	5011	6135	.	-	0	ID=cds-OAR20617.1;Parent=gene-A8144_10020;Dbxref=NCBI_GP:OAR20617.1;Name=OAR20617.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007774557.1;locus_tag=A8144_10020;product=alpha-(1-2)-phosphatidylinositol mannosyltransferase;protein_id=OAR20617.1;transl_table=11
LYPH01000039.1	Genbank	gene	6145	7107	.	-	.	ID=gene-A8144_10025;Name=A8144_10025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10025
LYPH01000039.1	Protein Homology	CDS	6145	7107	.	-	0	ID=cds-OAR20618.1;Parent=gene-A8144_10025;Dbxref=NCBI_GP:OAR20618.1;Name=OAR20618.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907731.1;locus_tag=A8144_10025;product=phosphatidylinositol mannoside acyltransferase;protein_id=OAR20618.1;transl_table=11
LYPH01000039.1	Genbank	gene	7104	7823	.	-	.	ID=gene-A8144_10030;Name=A8144_10030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10030
LYPH01000039.1	Protein Homology	CDS	7104	7823	.	-	0	ID=cds-OAR20619.1;Parent=gene-A8144_10030;Dbxref=NCBI_GP:OAR20619.1;Name=OAR20619.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907732.1;locus_tag=A8144_10030;product=CDP-diacylglycerol--inositol 3-phosphatidyltransferase;protein_id=OAR20619.1;transl_table=11
LYPH01000039.1	Genbank	gene	7820	8440	.	-	.	ID=gene-A8144_10035;Name=A8144_10035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10035
LYPH01000039.1	Protein Homology	CDS	7820	8440	.	-	0	ID=cds-OAR20620.1;Parent=gene-A8144_10035;Dbxref=NCBI_GP:OAR20620.1;Name=OAR20620.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907733.1;locus_tag=A8144_10035;product=diadenosine tetraphosphate hydrolase;protein_id=OAR20620.1;transl_table=11
LYPH01000039.1	Genbank	gene	8433	10541	.	-	.	ID=gene-A8144_10040;Name=A8144_10040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10040
LYPH01000039.1	Protein Homology	CDS	8433	10541	.	-	0	ID=cds-OAR20621.1;Parent=gene-A8144_10040;Dbxref=NCBI_GP:OAR20621.1;Name=OAR20621.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O07151.1;locus_tag=A8144_10040;product=threonine--tRNA ligase;protein_id=OAR20621.1;transl_table=11
LYPH01000039.1	Genbank	gene	11134	12039	.	-	.	ID=gene-A8144_10045;Name=A8144_10045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10045
LYPH01000039.1	Protein Homology	CDS	11134	12039	.	-	0	ID=cds-OAR20622.1;Parent=gene-A8144_10045;Dbxref=NCBI_GP:OAR20622.1;Name=OAR20622.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907735.1;locus_tag=A8144_10045;product=oxidoreductase;protein_id=OAR20622.1;transl_table=11
LYPH01000039.1	Genbank	gene	12378	12617	.	-	.	ID=gene-A8144_10050;Name=A8144_10050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10050
LYPH01000039.1	GeneMarkS+	CDS	12378	12617	.	-	0	ID=cds-OAR20623.1;Parent=gene-A8144_10050;Dbxref=NCBI_GP:OAR20623.1;Name=OAR20623.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10050;product=hypothetical protein;protein_id=OAR20623.1;transl_table=11
LYPH01000039.1	Genbank	gene	14579	14866	.	+	.	ID=gene-A8144_10055;Name=A8144_10055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10055
LYPH01000039.1	Protein Homology	CDS	14579	14866	.	+	0	ID=cds-OAR20638.1;Parent=gene-A8144_10055;Dbxref=NCBI_GP:OAR20638.1;Name=OAR20638.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907736.1;locus_tag=A8144_10055;product=hypothetical protein;protein_id=OAR20638.1;transl_table=11
LYPH01000039.1	Genbank	gene	15487	15795	.	-	.	ID=gene-A8144_10060;Name=A8144_10060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10060
LYPH01000039.1	GeneMarkS+	CDS	15487	15795	.	-	0	ID=cds-OAR20624.1;Parent=gene-A8144_10060;Dbxref=NCBI_GP:OAR20624.1;Name=OAR20624.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10060;product=hypothetical protein;protein_id=OAR20624.1;transl_table=11
LYPH01000039.1	Genbank	gene	16403	17308	.	+	.	ID=gene-A8144_10065;Name=A8144_10065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10065
LYPH01000039.1	Protein Homology	CDS	16403	17308	.	+	0	ID=cds-OAR20625.1;Parent=gene-A8144_10065;Dbxref=NCBI_GP:OAR20625.1;Name=OAR20625.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907737.1;locus_tag=A8144_10065;product=lysophospholipase;protein_id=OAR20625.1;transl_table=11
LYPH01000039.1	Genbank	gene	17354	17998	.	+	.	ID=gene-A8144_10070;Name=A8144_10070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10070
LYPH01000039.1	Protein Homology	CDS	17354	17998	.	+	0	ID=cds-OAR20626.1;Parent=gene-A8144_10070;Dbxref=NCBI_GP:OAR20626.1;Name=OAR20626.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49642.2;locus_tag=A8144_10070;product=hypothetical protein;protein_id=OAR20626.1;transl_table=11
LYPH01000039.1	Genbank	gene	18434	18700	.	-	.	ID=gene-A8144_10075;Name=A8144_10075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10075
LYPH01000039.1	GeneMarkS+	CDS	18434	18700	.	-	0	ID=cds-OAR20627.1;Parent=gene-A8144_10075;Dbxref=NCBI_GP:OAR20627.1;Name=OAR20627.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10075;product=hypothetical protein;protein_id=OAR20627.1;transl_table=11
LYPH01000039.1	Genbank	gene	18828	19610	.	-	.	ID=gene-A8144_10080;Name=A8144_10080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10080
LYPH01000039.1	Protein Homology	CDS	18828	19610	.	-	0	ID=cds-OAR20628.1;Parent=gene-A8144_10080;Dbxref=NCBI_GP:OAR20628.1;Name=OAR20628.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907739.1;locus_tag=A8144_10080;product=hypothetical protein;protein_id=OAR20628.1;transl_table=11
LYPH01000039.1	Genbank	gene	20113	20388	.	+	.	ID=gene-A8144_10085;Name=A8144_10085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10085
LYPH01000039.1	GeneMarkS+	CDS	20113	20388	.	+	0	ID=cds-OAR20629.1;Parent=gene-A8144_10085;Dbxref=NCBI_GP:OAR20629.1;Name=OAR20629.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10085;product=hypothetical protein;protein_id=OAR20629.1;transl_table=11
LYPH01000039.1	Genbank	pseudogene	20679	22212	.	+	.	ID=gene-A8144_10090;Name=A8144_10090;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10090;pseudo=true
LYPH01000039.1	Protein Homology	CDS	20679	22212	.	+	0	ID=cds-A8144_10090;Parent=gene-A8144_10090;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003878573.1;locus_tag=A8144_10090;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000039.1	Genbank	gene	22255	22485	.	+	.	ID=gene-A8144_10095;Name=A8144_10095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10095
LYPH01000039.1	GeneMarkS+	CDS	22255	22485	.	+	0	ID=cds-OAR20630.1;Parent=gene-A8144_10095;Dbxref=NCBI_GP:OAR20630.1;Name=OAR20630.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10095;product=hypothetical protein;protein_id=OAR20630.1;transl_table=11
LYPH01000039.1	Genbank	gene	24374	24664	.	-	.	ID=gene-A8144_10100;Name=A8144_10100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10100
LYPH01000039.1	Protein Homology	CDS	24374	24664	.	-	0	ID=cds-OAR20631.1;Parent=gene-A8144_10100;Dbxref=NCBI_GP:OAR20631.1;Name=OAR20631.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907740.1;locus_tag=A8144_10100;product=hypothetical protein;protein_id=OAR20631.1;transl_table=11
LYPH01000039.1	Genbank	gene	25999	26442	.	+	.	ID=gene-A8144_10105;Name=A8144_10105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10105
LYPH01000039.1	GeneMarkS+	CDS	25999	26442	.	+	0	ID=cds-OAR20632.1;Parent=gene-A8144_10105;Dbxref=NCBI_GP:OAR20632.1;Name=OAR20632.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10105;product=hypothetical protein;protein_id=OAR20632.1;transl_table=11
LYPH01000039.1	Genbank	gene	26471	26725	.	+	.	ID=gene-A8144_10110;Name=A8144_10110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10110
LYPH01000039.1	GeneMarkS+	CDS	26471	26725	.	+	0	ID=cds-OAR20633.1;Parent=gene-A8144_10110;Dbxref=NCBI_GP:OAR20633.1;Name=OAR20633.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10110;product=hypothetical protein;protein_id=OAR20633.1;transl_table=11
LYPH01000039.1	Genbank	gene	26803	27045	.	+	.	ID=gene-A8144_10115;Name=A8144_10115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10115
LYPH01000039.1	Protein Homology	CDS	26803	27045	.	+	0	ID=cds-OAR20634.1;Parent=gene-A8144_10115;Dbxref=NCBI_GP:OAR20634.1;Name=OAR20634.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907741.1;locus_tag=A8144_10115;product=hypothetical protein;protein_id=OAR20634.1;transl_table=11
LYPH01000039.1	Genbank	gene	27309	27581	.	+	.	ID=gene-A8144_10120;Name=A8144_10120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10120
LYPH01000039.1	Protein Homology	CDS	27309	27581	.	+	0	ID=cds-OAR20635.1;Parent=gene-A8144_10120;Dbxref=NCBI_GP:OAR20635.1;Name=OAR20635.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907742.1;locus_tag=A8144_10120;product=hypothetical protein;protein_id=OAR20635.1;transl_table=11
LYPH01000039.1	Genbank	gene	28315	28911	.	+	.	ID=gene-A8144_10125;Name=A8144_10125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10125
LYPH01000039.1	Protein Homology	CDS	28315	28911	.	+	0	ID=cds-OAR20639.1;Parent=gene-A8144_10125;Dbxref=NCBI_GP:OAR20639.1;Name=OAR20639.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCT5.2;locus_tag=A8144_10125;product=glutamine amidotransferase subunit PdxT;protein_id=OAR20639.1;transl_table=11
LYPH01000039.1	Genbank	gene	29132	29887	.	+	.	ID=gene-A8144_10130;Name=A8144_10130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10130
LYPH01000039.1	Protein Homology	CDS	29132	29887	.	+	0	ID=cds-OAR20636.1;Parent=gene-A8144_10130;Dbxref=NCBI_GP:OAR20636.1;Name=OAR20636.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019736436.1;locus_tag=A8144_10130;product=transcriptional regulator;protein_id=OAR20636.1;transl_table=11
LYPH01000039.1	Genbank	gene	30383	30604	.	+	.	ID=gene-A8144_10135;Name=A8144_10135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10135
LYPH01000039.1	GeneMarkS+	CDS	30383	30604	.	+	0	ID=cds-OAR20637.1;Parent=gene-A8144_10135;Dbxref=NCBI_GP:OAR20637.1;Name=OAR20637.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10135;product=hypothetical protein;protein_id=OAR20637.1;transl_table=11
##sequence-region LYPH01000040.1 1 30624
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000040.1	Genbank	region	1	30624	.	+	.	ID=LYPH01000040.1:1..30624;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000040.1	Genbank	pseudogene	440	1033	.	-	.	ID=gene-A8144_10140;Name=A8144_10140;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10140;pseudo=true
LYPH01000040.1	Protein Homology	CDS	440	1033	.	-	0	ID=cds-A8144_10140;Parent=gene-A8144_10140;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014208991.1;locus_tag=A8144_10140;product=ATP-binding protein;pseudo=true;transl_table=11
LYPH01000040.1	Genbank	pseudogene	1205	1546	.	-	.	ID=gene-A8144_10145;Name=A8144_10145;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10145;pseudo=true
LYPH01000040.1	Protein Homology	CDS	1205	1546	.	-	0	ID=cds-A8144_10145;Parent=gene-A8144_10145;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015630825.1;locus_tag=A8144_10145;product=dynein regulation protein LC7;pseudo=true;transl_table=11
LYPH01000040.1	Genbank	gene	2265	2450	.	-	.	ID=gene-A8144_10150;Name=A8144_10150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10150
LYPH01000040.1	GeneMarkS+	CDS	2265	2450	.	-	0	ID=cds-OAR20591.1;Parent=gene-A8144_10150;Dbxref=NCBI_GP:OAR20591.1;Name=OAR20591.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10150;product=hypothetical protein;protein_id=OAR20591.1;transl_table=11
LYPH01000040.1	Genbank	gene	2571	2804	.	-	.	ID=gene-A8144_10155;Name=A8144_10155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10155
LYPH01000040.1	GeneMarkS+	CDS	2571	2804	.	-	0	ID=cds-OAR20592.1;Parent=gene-A8144_10155;Dbxref=NCBI_GP:OAR20592.1;Name=OAR20592.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10155;product=hypothetical protein;protein_id=OAR20592.1;transl_table=11
LYPH01000040.1	Genbank	gene	3258	3614	.	-	.	ID=gene-A8144_10160;Name=A8144_10160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10160
LYPH01000040.1	GeneMarkS+	CDS	3258	3614	.	-	0	ID=cds-OAR20593.1;Parent=gene-A8144_10160;Dbxref=NCBI_GP:OAR20593.1;Name=OAR20593.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10160;product=hypothetical protein;protein_id=OAR20593.1;transl_table=11
LYPH01000040.1	Genbank	gene	3615	3950	.	-	.	ID=gene-A8144_10165;Name=A8144_10165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10165
LYPH01000040.1	GeneMarkS+	CDS	3615	3950	.	-	0	ID=cds-OAR20594.1;Parent=gene-A8144_10165;Dbxref=NCBI_GP:OAR20594.1;Name=OAR20594.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10165;product=hypothetical protein;protein_id=OAR20594.1;transl_table=11
LYPH01000040.1	Genbank	gene	3972	4178	.	-	.	ID=gene-A8144_10170;Name=A8144_10170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10170
LYPH01000040.1	GeneMarkS+	CDS	3972	4178	.	-	0	ID=cds-OAR20595.1;Parent=gene-A8144_10170;Dbxref=NCBI_GP:OAR20595.1;Name=OAR20595.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10170;product=hypothetical protein;protein_id=OAR20595.1;transl_table=11
LYPH01000040.1	Genbank	gene	4402	4866	.	+	.	ID=gene-A8144_10175;Name=A8144_10175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10175
LYPH01000040.1	Protein Homology	CDS	4402	4866	.	+	0	ID=cds-OAR20611.1;Parent=gene-A8144_10175;Dbxref=NCBI_GP:OAR20611.1;Name=OAR20611.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003901617.1;locus_tag=A8144_10175;product=RNA methyltransferase;protein_id=OAR20611.1;transl_table=11
LYPH01000040.1	Genbank	gene	5004	5648	.	-	.	ID=gene-A8144_10180;Name=A8144_10180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10180
LYPH01000040.1	Protein Homology	CDS	5004	5648	.	-	0	ID=cds-OAR20596.1;Parent=gene-A8144_10180;Dbxref=NCBI_GP:OAR20596.1;Name=OAR20596.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020727345.1;locus_tag=A8144_10180;product=nitroreductase;protein_id=OAR20596.1;transl_table=11
LYPH01000040.1	Genbank	gene	5871	6266	.	+	.	ID=gene-A8144_10185;Name=A8144_10185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10185
LYPH01000040.1	GeneMarkS+	CDS	5871	6266	.	+	0	ID=cds-OAR20597.1;Parent=gene-A8144_10185;Dbxref=NCBI_GP:OAR20597.1;Name=OAR20597.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10185;product=hypothetical protein;protein_id=OAR20597.1;transl_table=11
LYPH01000040.1	Genbank	gene	7760	8125	.	-	.	ID=gene-A8144_10190;Name=A8144_10190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10190
LYPH01000040.1	GeneMarkS+	CDS	7760	8125	.	-	0	ID=cds-OAR20598.1;Parent=gene-A8144_10190;Dbxref=NCBI_GP:OAR20598.1;Name=OAR20598.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10190;product=hypothetical protein;protein_id=OAR20598.1;transl_table=11
LYPH01000040.1	Genbank	pseudogene	8588	9953	.	+	.	ID=gene-A8144_10195;Name=A8144_10195;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10195;pseudo=true
LYPH01000040.1	Protein Homology	CDS	8588	9953	.	+	0	ID=cds-A8144_10195;Parent=gene-A8144_10195;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015303852.1;locus_tag=A8144_10195;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000040.1	Genbank	gene	10007	11296	.	+	.	ID=gene-A8144_10200;Name=A8144_10200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10200
LYPH01000040.1	Protein Homology	CDS	10007	11296	.	+	0	ID=cds-OAR20599.1;Parent=gene-A8144_10200;Dbxref=NCBI_GP:OAR20599.1;Name=OAR20599.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49734.1;locus_tag=A8144_10200;product=trehalose-phosphatase;protein_id=OAR20599.1;transl_table=11
LYPH01000040.1	Genbank	pseudogene	12276	12914	.	+	.	ID=gene-A8144_10205;Name=A8144_10205;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10205;pseudo=true
LYPH01000040.1	Protein Homology	CDS	12276	12914	.	+	0	ID=cds-A8144_10205;Parent=gene-A8144_10205;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012393037.1;locus_tag=A8144_10205;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000040.1	Genbank	gene	13299	14525	.	-	.	ID=gene-A8144_10210;Name=A8144_10210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10210
LYPH01000040.1	Protein Homology	CDS	13299	14525	.	-	0	ID=cds-OAR20600.1;Parent=gene-A8144_10210;Dbxref=NCBI_GP:OAR20600.1;Name=OAR20600.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907715.1;locus_tag=A8144_10210;product=hypothetical protein;protein_id=OAR20600.1;transl_table=11
LYPH01000040.1	Genbank	gene	14651	14953	.	-	.	ID=gene-A8144_10215;Name=A8144_10215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10215
LYPH01000040.1	Protein Homology	CDS	14651	14953	.	-	0	ID=cds-OAR20601.1;Parent=gene-A8144_10215;Dbxref=NCBI_GP:OAR20601.1;Name=OAR20601.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012634415.1;locus_tag=A8144_10215;product=PbsX family transcriptional regulator;protein_id=OAR20601.1;transl_table=11
LYPH01000040.1	Genbank	pseudogene	15561	16514	.	+	.	ID=gene-A8144_10220;Name=A8144_10220;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10220;pseudo=true
LYPH01000040.1	Protein Homology	CDS	15561	16514	.	+	0	ID=cds-A8144_10220;Parent=gene-A8144_10220;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_006898370.1;locus_tag=A8144_10220;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000040.1	Genbank	gene	17837	18487	.	-	.	ID=gene-A8144_10225;Name=A8144_10225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10225
LYPH01000040.1	Protein Homology	CDS	17837	18487	.	-	0	ID=cds-OAR20602.1;Parent=gene-A8144_10225;Dbxref=NCBI_GP:OAR20602.1;Name=OAR20602.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907713.1;locus_tag=A8144_10225;product=secretion protein EspD;protein_id=OAR20602.1;transl_table=11
LYPH01000040.1	Genbank	gene	18501	18821	.	-	.	ID=gene-A8144_10230;Name=A8144_10230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10230
LYPH01000040.1	Protein Homology	CDS	18501	18821	.	-	0	ID=cds-OAR20603.1;Parent=gene-A8144_10230;Dbxref=NCBI_GP:OAR20603.1;Name=OAR20603.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49723.1;locus_tag=A8144_10230;product=secretion protein EspC;protein_id=OAR20603.1;transl_table=11
LYPH01000040.1	Genbank	gene	18879	20063	.	-	.	ID=gene-A8144_10235;Name=A8144_10235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10235
LYPH01000040.1	Protein Homology	CDS	18879	20063	.	-	0	ID=cds-OAR20604.1;Parent=gene-A8144_10235;Dbxref=NCBI_GP:OAR20604.1;Name=OAR20604.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907711.1;locus_tag=A8144_10235;product=secretion protein EspA;protein_id=OAR20604.1;transl_table=11
LYPH01000040.1	Genbank	pseudogene	21530	22470	.	+	.	ID=gene-A8144_10240;Name=A8144_10240;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10240;pseudo=true
LYPH01000040.1	Protein Homology	CDS	21530	22470	.	+	0	ID=cds-A8144_10240;Parent=gene-A8144_10240;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011895728.1;locus_tag=A8144_10240;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000040.1	Genbank	pseudogene	22645	23396	.	+	.	ID=gene-A8144_10245;Name=A8144_10245;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10245;pseudo=true
LYPH01000040.1	Protein Homology	CDS	22645	23396	.	+	0	ID=cds-A8144_10245;Parent=gene-A8144_10245;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012394165.1;locus_tag=A8144_10245;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000040.1	Genbank	gene	24351	24599	.	-	.	ID=gene-A8144_10250;Name=A8144_10250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10250
LYPH01000040.1	GeneMarkS+	CDS	24351	24599	.	-	0	ID=cds-OAR20605.1;Parent=gene-A8144_10250;Dbxref=NCBI_GP:OAR20605.1;Name=OAR20605.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10250;product=hypothetical protein;protein_id=OAR20605.1;transl_table=11
LYPH01000040.1	Genbank	gene	24672	25043	.	-	.	ID=gene-A8144_10255;Name=A8144_10255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10255
LYPH01000040.1	GeneMarkS+	CDS	24672	25043	.	-	0	ID=cds-OAR20606.1;Parent=gene-A8144_10255;Dbxref=NCBI_GP:OAR20606.1;Name=OAR20606.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10255;product=hypothetical protein;protein_id=OAR20606.1;transl_table=11
LYPH01000040.1	Genbank	gene	26183	27220	.	+	.	ID=gene-A8144_10260;Name=A8144_10260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10260
LYPH01000040.1	Protein Homology	CDS	26183	27220	.	+	0	ID=cds-OAR20607.1;Parent=gene-A8144_10260;Dbxref=NCBI_GP:OAR20607.1;Name=OAR20607.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907710.1;locus_tag=A8144_10260;product=sugar ABC transporter substrate-binding protein;protein_id=OAR20607.1;transl_table=11
LYPH01000040.1	Genbank	gene	27297	27476	.	-	.	ID=gene-A8144_10265;Name=A8144_10265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10265
LYPH01000040.1	GeneMarkS+	CDS	27297	27476	.	-	0	ID=cds-OAR20608.1;Parent=gene-A8144_10265;Dbxref=NCBI_GP:OAR20608.1;Name=OAR20608.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10265;product=hypothetical protein;protein_id=OAR20608.1;transl_table=11
LYPH01000040.1	Genbank	gene	27533	29341	.	+	.	ID=gene-A8144_10270;Name=A8144_10270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10270
LYPH01000040.1	Protein Homology	CDS	27533	29341	.	+	0	ID=cds-OAR20609.1;Parent=gene-A8144_10270;Dbxref=NCBI_GP:OAR20609.1;Name=OAR20609.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907709.1;locus_tag=A8144_10270;product=transporter;protein_id=OAR20609.1;transl_table=11
LYPH01000040.1	Genbank	gene	29457	30566	.	+	.	ID=gene-A8144_10275;Name=A8144_10275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10275
LYPH01000040.1	Protein Homology	CDS	29457	30566	.	+	0	ID=cds-OAR20610.1;Parent=gene-A8144_10275;Dbxref=NCBI_GP:OAR20610.1;Name=OAR20610.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q57240.1;locus_tag=A8144_10275;product=inositol 1-phosphate synthase;protein_id=OAR20610.1;transl_table=11
##sequence-region LYPH01000041.1 1 30485
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000041.1	Genbank	region	1	30485	.	+	.	ID=LYPH01000041.1:1..30485;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000041.1	Genbank	pseudogene	1	555	.	-	.	ID=gene-A8144_10280;Name=A8144_10280;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10280;pseudo=true
LYPH01000041.1	GeneMarkS+	CDS	1	555	.	-	0	ID=cds-A8144_10280;Parent=gene-A8144_10280;Note=incomplete%3B too short partial abutting assembly gap%3B missing stop;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10280;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000041.1	Genbank	gene	913	2607	.	-	.	ID=gene-A8144_10285;Name=A8144_10285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10285
LYPH01000041.1	Protein Homology	CDS	913	2607	.	-	0	ID=cds-OAR20574.1;Parent=gene-A8144_10285;Dbxref=NCBI_GP:OAR20574.1;Name=OAR20574.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O06069.1;locus_tag=A8144_10285;product=dihydroxy-acid dehydratase;protein_id=OAR20574.1;transl_table=11
LYPH01000041.1	Genbank	gene	2764	3078	.	+	.	ID=gene-A8144_10290;Name=A8144_10290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10290
LYPH01000041.1	Protein Homology	CDS	2764	3078	.	+	0	ID=cds-OAR20588.1;Parent=gene-A8144_10290;Dbxref=NCBI_GP:OAR20588.1;Name=OAR20588.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011891484.1;locus_tag=A8144_10290;product=CopY family transcriptional regulator;protein_id=OAR20588.1;transl_table=11
LYPH01000041.1	Genbank	gene	3324	3530	.	+	.	ID=gene-A8144_10295;Name=A8144_10295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10295
LYPH01000041.1	GeneMarkS+	CDS	3324	3530	.	+	0	ID=cds-OAR20575.1;Parent=gene-A8144_10295;Dbxref=NCBI_GP:OAR20575.1;Name=OAR20575.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10295;product=hypothetical protein;protein_id=OAR20575.1;transl_table=11
LYPH01000041.1	Genbank	gene	3924	4208	.	+	.	ID=gene-A8144_10300;Name=A8144_10300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10300
LYPH01000041.1	GeneMarkS+	CDS	3924	4208	.	+	0	ID=cds-OAR20576.1;Parent=gene-A8144_10300;Dbxref=NCBI_GP:OAR20576.1;Name=OAR20576.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10300;product=hypothetical protein;protein_id=OAR20576.1;transl_table=11
LYPH01000041.1	Genbank	gene	6654	8657	.	-	.	ID=gene-A8144_10305;Name=A8144_10305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10305
LYPH01000041.1	Protein Homology	CDS	6654	8657	.	-	0	ID=cds-OAR20577.1;Parent=gene-A8144_10305;Dbxref=NCBI_GP:OAR20577.1;Name=OAR20577.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908991.1;locus_tag=A8144_10305;product=peptidase M13;protein_id=OAR20577.1;transl_table=11
LYPH01000041.1	Genbank	gene	8753	9391	.	+	.	ID=gene-A8144_10310;Name=A8144_10310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10310
LYPH01000041.1	Protein Homology	CDS	8753	9391	.	+	0	ID=cds-OAR20578.1;Parent=gene-A8144_10310;Dbxref=NCBI_GP:OAR20578.1;Name=OAR20578.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011739301.1;locus_tag=A8144_10310;product=hypothetical protein;protein_id=OAR20578.1;transl_table=11
LYPH01000041.1	Genbank	gene	9388	10077	.	+	.	ID=gene-A8144_10315;Name=A8144_10315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10315
LYPH01000041.1	Protein Homology	CDS	9388	10077	.	+	0	ID=cds-OAR20579.1;Parent=gene-A8144_10315;Dbxref=NCBI_GP:OAR20579.1;Name=OAR20579.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908993.1;locus_tag=A8144_10315;product=hypothetical protein;protein_id=OAR20579.1;transl_table=11
LYPH01000041.1	Genbank	gene	10156	10668	.	-	.	ID=gene-A8144_10320;Name=A8144_10320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10320
LYPH01000041.1	Protein Homology	CDS	10156	10668	.	-	0	ID=cds-OAR20580.1;Parent=gene-A8144_10320;Dbxref=NCBI_GP:OAR20580.1;Name=OAR20580.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908994.1;locus_tag=A8144_10320;product=hypothetical protein;protein_id=OAR20580.1;transl_table=11
LYPH01000041.1	Genbank	gene	10665	13709	.	-	.	ID=gene-A8144_10325;Name=A8144_10325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10325
LYPH01000041.1	Protein Homology	CDS	10665	13709	.	-	0	ID=cds-OAR20581.1;Parent=gene-A8144_10325;Dbxref=NCBI_GP:OAR20581.1;Name=OAR20581.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014381436.1;locus_tag=A8144_10325;product=hypothetical protein;protein_id=OAR20581.1;transl_table=11
LYPH01000041.1	Genbank	gene	14323	15381	.	-	.	ID=gene-A8144_10330;Name=A8144_10330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10330
LYPH01000041.1	Protein Homology	CDS	14323	15381	.	-	0	ID=cds-OAR20589.1;Parent=gene-A8144_10330;Dbxref=NCBI_GP:OAR20589.1;Name=OAR20589.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908996.1;locus_tag=A8144_10330;product=hypothetical protein;protein_id=OAR20589.1;transl_table=11
LYPH01000041.1	Genbank	pseudogene	15596	16705	.	+	.	ID=gene-A8144_10335;Name=A8144_10335;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10335;pseudo=true
LYPH01000041.1	Protein Homology	CDS	15596	16705	.	+	0	ID=cds-A8144_10335;Parent=gene-A8144_10335;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007769115.1;locus_tag=A8144_10335;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000041.1	Genbank	gene	16722	19589	.	-	.	ID=gene-A8144_10340;Name=A8144_10340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10340
LYPH01000041.1	Protein Homology	CDS	16722	19589	.	-	0	ID=cds-OAR20582.1;Parent=gene-A8144_10340;Dbxref=NCBI_GP:OAR20582.1;Name=OAR20582.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O06081.1;locus_tag=A8144_10340;product=hypothetical protein;protein_id=OAR20582.1;transl_table=11
LYPH01000041.1	Genbank	gene	19669	20256	.	-	.	ID=gene-A8144_10345;Name=A8144_10345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10345
LYPH01000041.1	Protein Homology	CDS	19669	20256	.	-	0	ID=cds-OAR20590.1;Parent=gene-A8144_10345;Dbxref=NCBI_GP:OAR20590.1;Name=OAR20590.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908998.1;locus_tag=A8144_10345;product=NYN domain-containing protein;protein_id=OAR20590.1;transl_table=11
LYPH01000041.1	Genbank	gene	20465	21157	.	-	.	ID=gene-A8144_10350;Name=A8144_10350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10350
LYPH01000041.1	Protein Homology	CDS	20465	21157	.	-	0	ID=cds-OAR20583.1;Parent=gene-A8144_10350;Dbxref=NCBI_GP:OAR20583.1;Name=OAR20583.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCZ9.1;locus_tag=A8144_10350;product=tRNA (guanosine(46)-N7)-methyltransferase TrmB;protein_id=OAR20583.1;transl_table=11
LYPH01000041.1	Genbank	gene	22783	22974	.	+	.	ID=gene-A8144_10355;Name=A8144_10355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10355
LYPH01000041.1	GeneMarkS+	CDS	22783	22974	.	+	0	ID=cds-OAR20584.1;Parent=gene-A8144_10355;Dbxref=NCBI_GP:OAR20584.1;Name=OAR20584.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10355;product=hypothetical protein;protein_id=OAR20584.1;transl_table=11
LYPH01000041.1	Genbank	gene	23163	24992	.	+	.	ID=gene-A8144_10360;Name=A8144_10360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10360
LYPH01000041.1	Protein Homology	CDS	23163	24992	.	+	0	ID=cds-OAR20585.1;Parent=gene-A8144_10360;Dbxref=NCBI_GP:OAR20585.1;Name=OAR20585.1;Note=catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014209960.1;locus_tag=A8144_10360;product=phosphoenolpyruvate carboxykinase;protein_id=OAR20585.1;transl_table=11
LYPH01000041.1	Genbank	gene	28150	29169	.	+	.	ID=gene-A8144_10365;Name=A8144_10365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10365
LYPH01000041.1	Protein Homology	CDS	28150	29169	.	+	0	ID=cds-OAR20586.1;Parent=gene-A8144_10365;Dbxref=NCBI_GP:OAR20586.1;Name=OAR20586.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014386003.1;locus_tag=A8144_10365;product=acyl dehydratase;protein_id=OAR20586.1;transl_table=11
LYPH01000041.1	Genbank	gene	29631	29882	.	+	.	ID=gene-A8144_10370;Name=A8144_10370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10370
LYPH01000041.1	GeneMarkS+	CDS	29631	29882	.	+	0	ID=cds-OAR20587.1;Parent=gene-A8144_10370;Dbxref=NCBI_GP:OAR20587.1;Name=OAR20587.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10370;product=hypothetical protein;protein_id=OAR20587.1;transl_table=11
##sequence-region LYPH01000042.1 1 30204
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000042.1	Genbank	region	1	30204	.	+	.	ID=LYPH01000042.1:1..30204;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000042.1	Genbank	gene	57	770	.	-	.	ID=gene-A8144_10375;Name=A8144_10375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10375
LYPH01000042.1	Protein Homology	CDS	57	770	.	-	0	ID=cds-OAR20570.1;Parent=gene-A8144_10375;Dbxref=NCBI_GP:OAR20570.1;Name=OAR20570.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014000636.1;locus_tag=A8144_10375;product=NAD-dependent protein deacylase;protein_id=OAR20570.1;transl_table=11
LYPH01000042.1	Genbank	gene	968	1168	.	+	.	ID=gene-A8144_10380;Name=A8144_10380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10380
LYPH01000042.1	GeneMarkS+	CDS	968	1168	.	+	0	ID=cds-OAR20557.1;Parent=gene-A8144_10380;Dbxref=NCBI_GP:OAR20557.1;Name=OAR20557.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10380;product=hypothetical protein;protein_id=OAR20557.1;transl_table=11
LYPH01000042.1	Genbank	gene	1315	1566	.	-	.	ID=gene-A8144_10385;Name=A8144_10385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10385
LYPH01000042.1	GeneMarkS+	CDS	1315	1566	.	-	0	ID=cds-OAR20558.1;Parent=gene-A8144_10385;Dbxref=NCBI_GP:OAR20558.1;Name=OAR20558.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10385;product=hypothetical protein;protein_id=OAR20558.1;transl_table=11
LYPH01000042.1	Genbank	gene	2013	2456	.	+	.	ID=gene-A8144_10390;Name=A8144_10390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10390
LYPH01000042.1	Protein Homology	CDS	2013	2456	.	+	0	ID=cds-OAR20571.1;Parent=gene-A8144_10390;Dbxref=NCBI_GP:OAR20571.1;Name=OAR20571.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003875444.1;locus_tag=A8144_10390;product=PPOX class F420-dependent enzyme;protein_id=OAR20571.1;transl_table=11
LYPH01000042.1	Genbank	pseudogene	2884	3458	.	+	.	ID=gene-A8144_10395;Name=A8144_10395;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10395;pseudo=true
LYPH01000042.1	Protein Homology	CDS	2884	3458	.	+	0	ID=cds-A8144_10395;Parent=gene-A8144_10395;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003920454.1;locus_tag=A8144_10395;product=Fe-S cluster assembly protein HesB;pseudo=true;transl_table=11
LYPH01000042.1	Genbank	gene	3633	4679	.	-	.	ID=gene-A8144_10400;Name=A8144_10400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10400
LYPH01000042.1	Protein Homology	CDS	3633	4679	.	-	0	ID=cds-OAR20559.1;Parent=gene-A8144_10400;Dbxref=NCBI_GP:OAR20559.1;Name=OAR20559.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908377.1;locus_tag=A8144_10400;product=hypothetical protein;protein_id=OAR20559.1;transl_table=11
LYPH01000042.1	Genbank	gene	4707	5255	.	-	.	ID=gene-A8144_10405;Name=A8144_10405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10405
LYPH01000042.1	Protein Homology	CDS	4707	5255	.	-	0	ID=cds-OAR20560.1;Parent=gene-A8144_10405;Dbxref=NCBI_GP:OAR20560.1;Name=OAR20560.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008254489.1;locus_tag=A8144_10405;product=hypothetical protein;protein_id=OAR20560.1;transl_table=11
LYPH01000042.1	Genbank	gene	5374	6651	.	+	.	ID=gene-A8144_10410;Name=pimE;gbkey=Gene;gene=pimE;gene_biotype=protein_coding;locus_tag=A8144_10410
LYPH01000042.1	Protein Homology	CDS	5374	6651	.	+	0	ID=cds-OAR20572.1;Parent=gene-A8144_10410;Dbxref=NCBI_GP:OAR20572.1;Name=OAR20572.1;Note=involved in the fifth mannose transfer of phosphatidylinositol mannoside synthesis;gbkey=CDS;gene=pimE;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003878499.1;locus_tag=A8144_10410;product=mannosyltransferase;protein_id=OAR20572.1;transl_table=11
LYPH01000042.1	Genbank	gene	6638	6922	.	-	.	ID=gene-A8144_10415;Name=A8144_10415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10415
LYPH01000042.1	Protein Homology	CDS	6638	6922	.	-	0	ID=cds-OAR20561.1;Parent=gene-A8144_10415;Dbxref=NCBI_GP:OAR20561.1;Name=OAR20561.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBX1.1;locus_tag=A8144_10415;product=4a-hydroxytetrahydrobiopterin dehydratase;protein_id=OAR20561.1;transl_table=11
LYPH01000042.1	Genbank	pseudogene	7750	11413	.	+	.	ID=gene-A8144_10420;Name=A8144_10420;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10420;pseudo=true
LYPH01000042.1	Protein Homology	CDS	7750	11413	.	+	0	ID=cds-A8144_10420;Parent=gene-A8144_10420;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010950499.1;locus_tag=A8144_10420;product=nitrate reductase subunit alpha;pseudo=true;transl_table=11
LYPH01000042.1	Genbank	pseudogene	11413	13085	.	+	.	ID=gene-A8144_10425;Name=narY;gbkey=Gene;gene=narY;gene_biotype=pseudogene;locus_tag=A8144_10425;pseudo=true
LYPH01000042.1	Protein Homology	CDS	11413	13085	.	+	0	ID=cds-A8144_10425;Parent=gene-A8144_10425;Note=with NarZV catalyzes the reduction of nitrate%3B the beta subunit is an iron sulfur cluster containing electron transfer subunit%3B one of 3 nitrate reductases in E. coli%3B expression of nitrate reductase Z is not dependent on nitrate levels%3B frameshifted%3B internal stop;gbkey=CDS;gene=narY;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_013116993.1;locus_tag=A8144_10425;product=nitrate reductase subunit beta;pseudo=true;transl_table=11
LYPH01000042.1	Genbank	pseudogene	13127	13740	.	+	.	ID=gene-A8144_10430;Name=A8144_10430;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10430;pseudo=true
LYPH01000042.1	Protein Homology	CDS	13127	13740	.	+	0	ID=cds-A8144_10430;Parent=gene-A8144_10430;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014941435.1;locus_tag=A8144_10430;product=nitrate reductase molybdenum cofactor assembly chaperone;pseudo=true;transl_table=11
LYPH01000042.1	Genbank	pseudogene	13760	14464	.	+	.	ID=gene-A8144_10435;Name=A8144_10435;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10435;pseudo=true
LYPH01000042.1	Protein Homology	CDS	13760	14464	.	+	0	ID=cds-A8144_10435;Parent=gene-A8144_10435;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003912944.1;locus_tag=A8144_10435;product=nitrate reductase;pseudo=true;transl_table=11
LYPH01000042.1	Genbank	gene	14586	16472	.	+	.	ID=gene-A8144_10440;Name=A8144_10440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10440
LYPH01000042.1	Protein Homology	CDS	14586	16472	.	+	0	ID=cds-OAR20562.1;Parent=gene-A8144_10440;Dbxref=NCBI_GP:OAR20562.1;Name=OAR20562.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009975500.1;locus_tag=A8144_10440;product=GTP-binding protein TypA;protein_id=OAR20562.1;transl_table=11
LYPH01000042.1	Genbank	gene	16539	18392	.	+	.	ID=gene-A8144_10445;Name=A8144_10445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10445
LYPH01000042.1	Protein Homology	CDS	16539	18392	.	+	0	ID=cds-OAR20573.1;Parent=gene-A8144_10445;Dbxref=NCBI_GP:OAR20573.1;Name=OAR20573.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908372.1;locus_tag=A8144_10445;product=monoacyl phosphatidylinositol tetramannoside-binding protein;protein_id=OAR20573.1;transl_table=11
LYPH01000042.1	Genbank	pseudogene	18415	19049	.	-	.	ID=gene-A8144_10450;Name=A8144_10450;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10450;pseudo=true
LYPH01000042.1	Protein Homology	CDS	18415	19049	.	-	0	ID=cds-A8144_10450;Parent=gene-A8144_10450;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009975502.1;locus_tag=A8144_10450;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000042.1	Genbank	gene	19199	20125	.	+	.	ID=gene-A8144_10455;Name=A8144_10455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10455
LYPH01000042.1	Protein Homology	CDS	19199	20125	.	+	0	ID=cds-OAR20563.1;Parent=gene-A8144_10455;Dbxref=NCBI_GP:OAR20563.1;Name=OAR20563.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBX4.1;locus_tag=A8144_10455;product=N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase;protein_id=OAR20563.1;transl_table=11
LYPH01000042.1	Genbank	gene	20290	20643	.	+	.	ID=gene-A8144_10460;Name=A8144_10460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10460
LYPH01000042.1	Protein Homology	CDS	20290	20643	.	+	0	ID=cds-OAR20564.1;Parent=gene-A8144_10460;Dbxref=NCBI_GP:OAR20564.1;Name=OAR20564.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005626317.1;locus_tag=A8144_10460;product=hypothetical protein;protein_id=OAR20564.1;transl_table=11
LYPH01000042.1	Genbank	pseudogene	20640	21528	.	-	.	ID=gene-A8144_10465;Name=A8144_10465;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10465;pseudo=true
LYPH01000042.1	Protein Homology	CDS	20640	21528	.	-	0	ID=cds-A8144_10465;Parent=gene-A8144_10465;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014390071.1;locus_tag=A8144_10465;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000042.1	Genbank	gene	21810	24401	.	+	.	ID=gene-A8144_10470;Name=fbiC;gbkey=Gene;gene=fbiC;gene_biotype=protein_coding;locus_tag=A8144_10470
LYPH01000042.1	Protein Homology	CDS	21810	24401	.	+	0	ID=cds-OAR20565.1;Parent=gene-A8144_10470;Dbxref=NCBI_GP:OAR20565.1;Name=OAR20565.1;Note=7%2C8-didemethyl-8-hydroxy-5-deazariboflavin synthase%3B catalyzes radical-mediated transfer of hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino-6-ribitylamino-2%2C4(1H%2C3H)-pyrimidinedione to form 7%2C8-didemethyl-8-hydroxy-5-deazariboflavin (FO)%3B functions in F420 biosynthesis;gbkey=CDS;gene=fbiC;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBX6.1;locus_tag=A8144_10470;product=7%2C8-didemethyl-8-hydroxy-5-deazariboflavin synthase;protein_id=OAR20565.1;transl_table=11
LYPH01000042.1	Genbank	pseudogene	25046	27038	.	-	.	ID=gene-A8144_10475;Name=A8144_10475;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10475;pseudo=true
LYPH01000042.1	Protein Homology	CDS	25046	27038	.	-	0	ID=cds-A8144_10475;Parent=gene-A8144_10475;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003896520.1;locus_tag=A8144_10475;product=NADPH-dependent 2%2C4-dienoyl-CoA reductase;pseudo=true;transl_table=11
LYPH01000042.1	Genbank	gene	27588	27914	.	+	.	ID=gene-A8144_10480;Name=A8144_10480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10480
LYPH01000042.1	Protein Homology	CDS	27588	27914	.	+	0	ID=cds-OAR20566.1;Parent=gene-A8144_10480;Dbxref=NCBI_GP:OAR20566.1;Name=OAR20566.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908368.1;locus_tag=A8144_10480;product=ferredoxin;protein_id=OAR20566.1;transl_table=11
LYPH01000042.1	Genbank	gene	27952	29055	.	+	.	ID=gene-A8144_10485;Name=A8144_10485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10485
LYPH01000042.1	Protein Homology	CDS	27952	29055	.	+	0	ID=cds-OAR20567.1;Parent=gene-A8144_10485;Dbxref=NCBI_GP:OAR20567.1;Name=OAR20567.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908367.1;locus_tag=A8144_10485;product=succinyldiaminopimelate transaminase;protein_id=OAR20567.1;transl_table=11
LYPH01000042.1	Genbank	gene	29200	29415	.	+	.	ID=gene-A8144_10490;Name=A8144_10490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10490
LYPH01000042.1	GeneMarkS+	CDS	29200	29415	.	+	0	ID=cds-OAR20568.1;Parent=gene-A8144_10490;Dbxref=NCBI_GP:OAR20568.1;Name=OAR20568.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10490;product=hypothetical protein;protein_id=OAR20568.1;transl_table=11
LYPH01000042.1	Genbank	gene	29833	30141	.	+	.	ID=gene-A8144_10495;Name=A8144_10495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10495
LYPH01000042.1	GeneMarkS+	CDS	29833	30141	.	+	0	ID=cds-OAR20569.1;Parent=gene-A8144_10495;Dbxref=NCBI_GP:OAR20569.1;Name=OAR20569.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10495;product=hypothetical protein;protein_id=OAR20569.1;transl_table=11
##sequence-region LYPH01000043.1 1 28873
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000043.1	Genbank	region	1	28873	.	+	.	ID=LYPH01000043.1:1..28873;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000043.1	Genbank	pseudogene	1	257	.	-	.	ID=gene-A8144_10500;Name=A8144_10500;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10500;pseudo=true
LYPH01000043.1	GeneMarkS+	CDS	1	257	.	-	0	ID=cds-A8144_10500;Parent=gene-A8144_10500;Note=incomplete%3B too short partial abutting assembly gap%3B missing stop;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10500;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000043.1	Genbank	gene	888	1145	.	-	.	ID=gene-A8144_10505;Name=A8144_10505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10505
LYPH01000043.1	GeneMarkS+	CDS	888	1145	.	-	0	ID=cds-OAR20541.1;Parent=gene-A8144_10505;Dbxref=NCBI_GP:OAR20541.1;Name=OAR20541.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10505;product=hypothetical protein;protein_id=OAR20541.1;transl_table=11
LYPH01000043.1	Genbank	gene	1411	1614	.	-	.	ID=gene-A8144_10510;Name=A8144_10510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10510
LYPH01000043.1	GeneMarkS+	CDS	1411	1614	.	-	0	ID=cds-OAR20542.1;Parent=gene-A8144_10510;Dbxref=NCBI_GP:OAR20542.1;Name=OAR20542.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10510;product=hypothetical protein;protein_id=OAR20542.1;transl_table=11
LYPH01000043.1	Genbank	gene	1803	1994	.	-	.	ID=gene-A8144_10515;Name=A8144_10515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10515
LYPH01000043.1	GeneMarkS+	CDS	1803	1994	.	-	0	ID=cds-OAR20543.1;Parent=gene-A8144_10515;Dbxref=NCBI_GP:OAR20543.1;Name=OAR20543.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10515;product=hypothetical protein;protein_id=OAR20543.1;transl_table=11
LYPH01000043.1	Genbank	gene	3032	3916	.	-	.	ID=gene-A8144_10520;Name=A8144_10520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10520
LYPH01000043.1	Protein Homology	CDS	3032	3916	.	-	0	ID=cds-OAR20544.1;Parent=gene-A8144_10520;Dbxref=NCBI_GP:OAR20544.1;Name=OAR20544.1;Note=Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P53526.1;locus_tag=A8144_10520;product=enoyl-CoA hydratase;protein_id=OAR20544.1;transl_table=11
LYPH01000043.1	Genbank	gene	4901	5122	.	+	.	ID=gene-A8144_10525;Name=A8144_10525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10525
LYPH01000043.1	GeneMarkS+	CDS	4901	5122	.	+	0	ID=cds-OAR20545.1;Parent=gene-A8144_10525;Dbxref=NCBI_GP:OAR20545.1;Name=OAR20545.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10525;product=hypothetical protein;protein_id=OAR20545.1;transl_table=11
LYPH01000043.1	Genbank	gene	5838	6164	.	-	.	ID=gene-A8144_10530;Name=A8144_10530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10530
LYPH01000043.1	GeneMarkS+	CDS	5838	6164	.	-	0	ID=cds-OAR20546.1;Parent=gene-A8144_10530;Dbxref=NCBI_GP:OAR20546.1;Name=OAR20546.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10530;product=hypothetical protein;protein_id=OAR20546.1;transl_table=11
LYPH01000043.1	Genbank	gene	7809	8033	.	-	.	ID=gene-A8144_10535;Name=A8144_10535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10535
LYPH01000043.1	GeneMarkS+	CDS	7809	8033	.	-	0	ID=cds-OAR20547.1;Parent=gene-A8144_10535;Dbxref=NCBI_GP:OAR20547.1;Name=OAR20547.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10535;product=hypothetical protein;protein_id=OAR20547.1;transl_table=11
LYPH01000043.1	Genbank	gene	8193	8489	.	+	.	ID=gene-A8144_10540;Name=A8144_10540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10540
LYPH01000043.1	GeneMarkS+	CDS	8193	8489	.	+	0	ID=cds-OAR20548.1;Parent=gene-A8144_10540;Dbxref=NCBI_GP:OAR20548.1;Name=OAR20548.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10540;product=hypothetical protein;protein_id=OAR20548.1;transl_table=11
LYPH01000043.1	Genbank	gene	8573	8767	.	-	.	ID=gene-A8144_10545;Name=A8144_10545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10545
LYPH01000043.1	GeneMarkS+	CDS	8573	8767	.	-	0	ID=cds-OAR20549.1;Parent=gene-A8144_10545;Dbxref=NCBI_GP:OAR20549.1;Name=OAR20549.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10545;product=hypothetical protein;protein_id=OAR20549.1;transl_table=11
LYPH01000043.1	Genbank	gene	11153	12892	.	+	.	ID=gene-A8144_10550;Name=A8144_10550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10550
LYPH01000043.1	Protein Homology	CDS	11153	12892	.	+	0	ID=cds-OAR20550.1;Parent=gene-A8144_10550;Dbxref=NCBI_GP:OAR20550.1;Name=OAR20550.1;Note=activates fatty acids by binding to coenzyme A;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P54200.2;locus_tag=A8144_10550;product=acyl-CoA synthetase;protein_id=OAR20550.1;transl_table=11
LYPH01000043.1	Genbank	gene	12922	13614	.	+	.	ID=gene-A8144_10555;Name=A8144_10555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10555
LYPH01000043.1	Protein Homology	CDS	12922	13614	.	+	0	ID=cds-OAR20551.1;Parent=gene-A8144_10555;Dbxref=NCBI_GP:OAR20551.1;Name=OAR20551.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908215.1;locus_tag=A8144_10555;product=hypothetical protein;protein_id=OAR20551.1;transl_table=11
LYPH01000043.1	Genbank	gene	13779	14855	.	+	.	ID=gene-A8144_10560;Name=A8144_10560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10560
LYPH01000043.1	Protein Homology	CDS	13779	14855	.	+	0	ID=cds-OAR20552.1;Parent=gene-A8144_10560;Dbxref=NCBI_GP:OAR20552.1;Name=OAR20552.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908214.1;locus_tag=A8144_10560;product=PE-PPE domain-containing protein;protein_id=OAR20552.1;transl_table=11
LYPH01000043.1	Genbank	gene	15283	18234	.	-	.	ID=gene-A8144_10565;Name=A8144_10565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10565
LYPH01000043.1	Protein Homology	CDS	15283	18234	.	-	0	ID=cds-OAR20556.1;Parent=gene-A8144_10565;Dbxref=NCBI_GP:OAR20556.1;Name=OAR20556.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908213.1;locus_tag=A8144_10565;product=hypothetical protein;protein_id=OAR20556.1;transl_table=11
LYPH01000043.1	Genbank	gene	18316	19731	.	-	.	ID=gene-A8144_10570;Name=A8144_10570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10570
LYPH01000043.1	Protein Homology	CDS	18316	19731	.	-	0	ID=cds-OAR20553.1;Parent=gene-A8144_10570;Dbxref=NCBI_GP:OAR20553.1;Name=OAR20553.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908212.1;locus_tag=A8144_10570;product=acyltransferase;protein_id=OAR20553.1;transl_table=11
LYPH01000043.1	Genbank	gene	19812	26168	.	-	.	ID=gene-A8144_10575;Name=A8144_10575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10575
LYPH01000043.1	Protein Homology	CDS	19812	26168	.	-	0	ID=cds-OAR20554.1;Parent=gene-A8144_10575;Dbxref=NCBI_GP:OAR20554.1;Name=OAR20554.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908211.1;locus_tag=A8144_10575;product=polyketide synthase;protein_id=OAR20554.1;transl_table=11
LYPH01000043.1	Genbank	pseudogene	26421	27573	.	-	.	ID=gene-A8144_10580;Name=A8144_10580;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10580;pseudo=true
LYPH01000043.1	Protein Homology	CDS	26421	27573	.	-	0	ID=cds-A8144_10580;Parent=gene-A8144_10580;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003916429.1;locus_tag=A8144_10580;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000043.1	Genbank	gene	27750	27971	.	-	.	ID=gene-A8144_10585;Name=A8144_10585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10585
LYPH01000043.1	GeneMarkS+	CDS	27750	27971	.	-	0	ID=cds-OAR20555.1;Parent=gene-A8144_10585;Dbxref=NCBI_GP:OAR20555.1;Name=OAR20555.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10585;product=hypothetical protein;protein_id=OAR20555.1;transl_table=11
##sequence-region LYPH01000044.1 1 113892
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000044.1	Genbank	region	1	113892	.	+	.	ID=LYPH01000044.1:1..113892;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000044.1	Genbank	gene	620	949	.	+	.	ID=gene-A8144_02180;Name=A8144_02180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02180
LYPH01000044.1	GeneMarkS+	CDS	620	949	.	+	0	ID=cds-OAR20454.1;Parent=gene-A8144_02180;Dbxref=NCBI_GP:OAR20454.1;Name=OAR20454.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02180;product=hypothetical protein;protein_id=OAR20454.1;transl_table=11
LYPH01000044.1	Genbank	gene	1814	2467	.	-	.	ID=gene-A8144_02185;Name=A8144_02185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02185
LYPH01000044.1	GeneMarkS+	CDS	1814	2467	.	-	0	ID=cds-OAR20455.1;Parent=gene-A8144_02185;Dbxref=NCBI_GP:OAR20455.1;Name=OAR20455.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02185;product=hypothetical protein;protein_id=OAR20455.1;transl_table=11
LYPH01000044.1	Genbank	gene	2955	3149	.	-	.	ID=gene-A8144_02190;Name=A8144_02190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02190
LYPH01000044.1	GeneMarkS+	CDS	2955	3149	.	-	0	ID=cds-OAR20456.1;Parent=gene-A8144_02190;Dbxref=NCBI_GP:OAR20456.1;Name=OAR20456.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02190;product=hypothetical protein;protein_id=OAR20456.1;transl_table=11
LYPH01000044.1	Genbank	gene	3163	3534	.	+	.	ID=gene-A8144_02195;Name=A8144_02195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02195
LYPH01000044.1	GeneMarkS+	CDS	3163	3534	.	+	0	ID=cds-OAR20457.1;Parent=gene-A8144_02195;Dbxref=NCBI_GP:OAR20457.1;Name=OAR20457.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02195;product=hypothetical protein;protein_id=OAR20457.1;transl_table=11
LYPH01000044.1	Genbank	gene	3748	4296	.	-	.	ID=gene-A8144_02200;Name=A8144_02200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02200
LYPH01000044.1	Protein Homology	CDS	3748	4296	.	-	0	ID=cds-OAR20458.1;Parent=gene-A8144_02200;Dbxref=NCBI_GP:OAR20458.1;Name=OAR20458.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908954.1;locus_tag=A8144_02200;product=aminoglycoside N-acetyltransferase AAC(2')-Ie;protein_id=OAR20458.1;transl_table=11
LYPH01000044.1	Genbank	gene	4343	5260	.	-	.	ID=gene-A8144_02205;Name=A8144_02205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02205
LYPH01000044.1	Protein Homology	CDS	4343	5260	.	-	0	ID=cds-OAR20459.1;Parent=gene-A8144_02205;Dbxref=NCBI_GP:OAR20459.1;Name=OAR20459.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908953.1;locus_tag=A8144_02205;product=allophanate hydrolase;protein_id=OAR20459.1;transl_table=11
LYPH01000044.1	Genbank	gene	5282	5950	.	-	.	ID=gene-A8144_02210;Name=A8144_02210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02210
LYPH01000044.1	Protein Homology	CDS	5282	5950	.	-	0	ID=cds-OAR20460.1;Parent=gene-A8144_02210;Dbxref=NCBI_GP:OAR20460.1;Name=OAR20460.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908952.1;locus_tag=A8144_02210;product=allophanate hydrolase;protein_id=OAR20460.1;transl_table=11
LYPH01000044.1	Genbank	pseudogene	6111	6722	.	-	.	ID=gene-A8144_02215;Name=A8144_02215;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02215;pseudo=true
LYPH01000044.1	Protein Homology	CDS	6111	6722	.	-	0	ID=cds-A8144_02215;Parent=gene-A8144_02215;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014712498.1;locus_tag=A8144_02215;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000044.1	Genbank	gene	8149	9828	.	+	.	ID=gene-A8144_02220;Name=A8144_02220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02220
LYPH01000044.1	Protein Homology	CDS	8149	9828	.	+	0	ID=cds-OAR20461.1;Parent=gene-A8144_02220;Dbxref=NCBI_GP:OAR20461.1;Name=OAR20461.1;Note=activates fatty acids by binding to coenzyme A;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020727890.1;locus_tag=A8144_02220;product=acyl-CoA synthetase;protein_id=OAR20461.1;transl_table=11
LYPH01000044.1	Genbank	gene	11639	11980	.	-	.	ID=gene-A8144_02225;Name=A8144_02225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02225
LYPH01000044.1	GeneMarkS+	CDS	11639	11980	.	-	0	ID=cds-OAR20462.1;Parent=gene-A8144_02225;Dbxref=NCBI_GP:OAR20462.1;Name=OAR20462.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02225;product=hypothetical protein;protein_id=OAR20462.1;transl_table=11
LYPH01000044.1	Genbank	pseudogene	12097	13214	.	-	.	ID=gene-A8144_02230;Name=A8144_02230;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02230;pseudo=true
LYPH01000044.1	Protein Homology	CDS	12097	13214	.	-	0	ID=cds-A8144_02230;Parent=gene-A8144_02230;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010950370.1;locus_tag=A8144_02230;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000044.1	Genbank	gene	13588	13914	.	-	.	ID=gene-A8144_02235;Name=A8144_02235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02235
LYPH01000044.1	GeneMarkS+	CDS	13588	13914	.	-	0	ID=cds-OAR20463.1;Parent=gene-A8144_02235;Dbxref=NCBI_GP:OAR20463.1;Name=OAR20463.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02235;product=hypothetical protein;protein_id=OAR20463.1;transl_table=11
LYPH01000044.1	Genbank	pseudogene	14649	15114	.	+	.	ID=gene-A8144_02240;Name=A8144_02240;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02240;pseudo=true
LYPH01000044.1	Protein Homology	CDS	14649	15114	.	+	0	ID=cds-A8144_02240;Parent=gene-A8144_02240;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014943072.1;locus_tag=A8144_02240;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000044.1	Genbank	gene	16926	17189	.	+	.	ID=gene-A8144_02245;Name=A8144_02245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02245
LYPH01000044.1	GeneMarkS+	CDS	16926	17189	.	+	0	ID=cds-OAR20464.1;Parent=gene-A8144_02245;Dbxref=NCBI_GP:OAR20464.1;Name=OAR20464.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02245;product=hypothetical protein;protein_id=OAR20464.1;transl_table=11
LYPH01000044.1	Genbank	gene	17829	18101	.	+	.	ID=gene-A8144_02250;Name=A8144_02250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02250
LYPH01000044.1	GeneMarkS+	CDS	17829	18101	.	+	0	ID=cds-OAR20465.1;Parent=gene-A8144_02250;Dbxref=NCBI_GP:OAR20465.1;Name=OAR20465.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02250;product=hypothetical protein;protein_id=OAR20465.1;transl_table=11
LYPH01000044.1	Genbank	gene	18271	18477	.	+	.	ID=gene-A8144_02255;Name=A8144_02255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02255
LYPH01000044.1	GeneMarkS+	CDS	18271	18477	.	+	0	ID=cds-OAR20466.1;Parent=gene-A8144_02255;Dbxref=NCBI_GP:OAR20466.1;Name=OAR20466.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02255;product=hypothetical protein;protein_id=OAR20466.1;transl_table=11
LYPH01000044.1	Genbank	gene	19006	19278	.	+	.	ID=gene-A8144_02260;Name=A8144_02260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02260
LYPH01000044.1	GeneMarkS+	CDS	19006	19278	.	+	0	ID=cds-OAR20467.1;Parent=gene-A8144_02260;Dbxref=NCBI_GP:OAR20467.1;Name=OAR20467.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02260;product=hypothetical protein;protein_id=OAR20467.1;transl_table=11
LYPH01000044.1	Genbank	gene	19483	21405	.	+	.	ID=gene-A8144_02265;Name=A8144_02265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02265
LYPH01000044.1	Protein Homology	CDS	19483	21405	.	+	0	ID=cds-OAR20468.1;Parent=gene-A8144_02265;Dbxref=NCBI_GP:OAR20468.1;Name=OAR20468.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CD28.1;locus_tag=A8144_02265;product=type VII secretion AAA-ATPase EccA;protein_id=OAR20468.1;transl_table=11
LYPH01000044.1	Genbank	gene	21398	23056	.	+	.	ID=gene-A8144_02270;Name=A8144_02270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02270
LYPH01000044.1	Protein Homology	CDS	21398	23056	.	+	0	ID=cds-OAR20469.1;Parent=gene-A8144_02270;Dbxref=NCBI_GP:OAR20469.1;Name=OAR20469.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908949.1;locus_tag=A8144_02270;product=type VII secretion protein EccB;protein_id=OAR20469.1;transl_table=11
LYPH01000044.1	Genbank	gene	23053	27042	.	+	.	ID=gene-A8144_02275;Name=A8144_02275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02275
LYPH01000044.1	Protein Homology	CDS	23053	27042	.	+	0	ID=cds-OAR20470.1;Parent=gene-A8144_02275;Dbxref=NCBI_GP:OAR20470.1;Name=OAR20470.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908948.1;locus_tag=A8144_02275;product=type VII secretion protein EccC;protein_id=OAR20470.1;transl_table=11
LYPH01000044.1	Genbank	gene	27077	27385	.	+	.	ID=gene-A8144_02280;Name=A8144_02280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02280
LYPH01000044.1	Protein Homology	CDS	27077	27385	.	+	0	ID=cds-OAR20471.1;Parent=gene-A8144_02280;Dbxref=NCBI_GP:OAR20471.1;Name=OAR20471.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908947.1;locus_tag=A8144_02280;product=cell motility protein;protein_id=OAR20471.1;transl_table=11
LYPH01000044.1	Genbank	gene	27388	28446	.	+	.	ID=gene-A8144_02285;Name=A8144_02285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02285
LYPH01000044.1	GeneMarkS+	CDS	27388	28446	.	+	0	ID=cds-OAR20472.1;Parent=gene-A8144_02285;Dbxref=NCBI_GP:OAR20472.1;Name=OAR20472.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02285;product=hypothetical protein;protein_id=OAR20472.1;transl_table=11
LYPH01000044.1	Genbank	gene	28674	28970	.	+	.	ID=gene-A8144_02290;Name=A8144_02290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02290
LYPH01000044.1	Protein Homology	CDS	28674	28970	.	+	0	ID=cds-OAR20473.1;Parent=gene-A8144_02290;Dbxref=NCBI_GP:OAR20473.1;Name=OAR20473.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908946.1;locus_tag=A8144_02290;product=type VII secretion protein EsxS;protein_id=OAR20473.1;transl_table=11
LYPH01000044.1	Genbank	gene	29009	29299	.	+	.	ID=gene-A8144_02295;Name=A8144_02295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02295
LYPH01000044.1	Protein Homology	CDS	29009	29299	.	+	0	ID=cds-OAR20474.1;Parent=gene-A8144_02295;Dbxref=NCBI_GP:OAR20474.1;Name=OAR20474.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CD33.1;locus_tag=A8144_02295;product=type VII secretion protein EsxH;protein_id=OAR20474.1;transl_table=11
LYPH01000044.1	Genbank	gene	29310	30179	.	+	.	ID=gene-A8144_02300;Name=A8144_02300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02300
LYPH01000044.1	Protein Homology	CDS	29310	30179	.	+	0	ID=cds-OAR20475.1;Parent=gene-A8144_02300;Dbxref=NCBI_GP:OAR20475.1;Name=OAR20475.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908944.1;locus_tag=A8144_02300;product=secretion protein EspG;protein_id=OAR20475.1;transl_table=11
LYPH01000044.1	Genbank	gene	30321	31778	.	+	.	ID=gene-A8144_02305;Name=A8144_02305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02305
LYPH01000044.1	Protein Homology	CDS	30321	31778	.	+	0	ID=cds-OAR20476.1;Parent=gene-A8144_02305;Dbxref=NCBI_GP:OAR20476.1;Name=OAR20476.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908943.1;locus_tag=A8144_02305;product=type VII secretion integral membrane protein EccD;protein_id=OAR20476.1;transl_table=11
LYPH01000044.1	Genbank	gene	31789	33216	.	+	.	ID=gene-A8144_02310;Name=A8144_02310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02310
LYPH01000044.1	Protein Homology	CDS	31789	33216	.	+	0	ID=cds-OAR20477.1;Parent=gene-A8144_02310;Dbxref=NCBI_GP:OAR20477.1;Name=OAR20477.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908942.1;locus_tag=A8144_02310;product=type VII secretion-associated serine protease mycosin;protein_id=OAR20477.1;transl_table=11
LYPH01000044.1	Genbank	gene	33213	34232	.	+	.	ID=gene-A8144_02315;Name=A8144_02315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02315
LYPH01000044.1	Protein Homology	CDS	33213	34232	.	+	0	ID=cds-OAR20478.1;Parent=gene-A8144_02315;Dbxref=NCBI_GP:OAR20478.1;Name=OAR20478.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908941.1;locus_tag=A8144_02315;product=type VII secretion protein EccE;protein_id=OAR20478.1;transl_table=11
LYPH01000044.1	Genbank	gene	37081	37299	.	-	.	ID=gene-A8144_02320;Name=A8144_02320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02320
LYPH01000044.1	GeneMarkS+	CDS	37081	37299	.	-	0	ID=cds-OAR20479.1;Parent=gene-A8144_02320;Dbxref=NCBI_GP:OAR20479.1;Name=OAR20479.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02320;product=hypothetical protein;protein_id=OAR20479.1;transl_table=11
LYPH01000044.1	Genbank	gene	37586	37801	.	+	.	ID=gene-A8144_02325;Name=A8144_02325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02325
LYPH01000044.1	GeneMarkS+	CDS	37586	37801	.	+	0	ID=cds-OAR20480.1;Parent=gene-A8144_02325;Dbxref=NCBI_GP:OAR20480.1;Name=OAR20480.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02325;product=hypothetical protein;protein_id=OAR20480.1;transl_table=11
LYPH01000044.1	Genbank	gene	38242	38898	.	+	.	ID=gene-A8144_02330;Name=A8144_02330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02330
LYPH01000044.1	Protein Homology	CDS	38242	38898	.	+	0	ID=cds-OAR20481.1;Parent=gene-A8144_02330;Dbxref=NCBI_GP:OAR20481.1;Name=OAR20481.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009955662.1;locus_tag=A8144_02330;product=hypothetical protein;protein_id=OAR20481.1;transl_table=11
LYPH01000044.1	Genbank	pseudogene	39456	40678	.	+	.	ID=gene-A8144_02335;Name=A8144_02335;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02335;pseudo=true
LYPH01000044.1	Protein Homology	CDS	39456	40678	.	+	0	ID=cds-A8144_02335;Parent=gene-A8144_02335;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005084285.1;locus_tag=A8144_02335;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000044.1	Genbank	gene	43280	43672	.	+	.	ID=gene-A8144_02340;Name=A8144_02340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02340
LYPH01000044.1	Protein Homology	CDS	43280	43672	.	+	0	ID=cds-OAR20482.1;Parent=gene-A8144_02340;Dbxref=NCBI_GP:OAR20482.1;Name=OAR20482.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908939.1;locus_tag=A8144_02340;product=hypothetical protein;protein_id=OAR20482.1;transl_table=11
LYPH01000044.1	Genbank	pseudogene	46349	47870	.	-	.	ID=gene-A8144_02345;Name=A8144_02345;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02345;pseudo=true
LYPH01000044.1	Protein Homology	CDS	46349	47870	.	-	0	ID=cds-A8144_02345;Parent=gene-A8144_02345;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003873915.1;locus_tag=A8144_02345;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000044.1	Genbank	pseudogene	48466	49003	.	+	.	ID=gene-A8144_02350;Name=A8144_02350;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02350;pseudo=true
LYPH01000044.1	Protein Homology	CDS	48466	49003	.	+	0	ID=cds-A8144_02350;Parent=gene-A8144_02350;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019737340.1;locus_tag=A8144_02350;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000044.1	Genbank	gene	49941	50135	.	-	.	ID=gene-A8144_02355;Name=A8144_02355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02355
LYPH01000044.1	GeneMarkS+	CDS	49941	50135	.	-	0	ID=cds-OAR20483.1;Parent=gene-A8144_02355;Dbxref=NCBI_GP:OAR20483.1;Name=OAR20483.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02355;product=hypothetical protein;protein_id=OAR20483.1;transl_table=11
LYPH01000044.1	Genbank	gene	50281	50616	.	-	.	ID=gene-A8144_02360;Name=A8144_02360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02360
LYPH01000044.1	GeneMarkS+	CDS	50281	50616	.	-	0	ID=cds-OAR20484.1;Parent=gene-A8144_02360;Dbxref=NCBI_GP:OAR20484.1;Name=OAR20484.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02360;product=hypothetical protein;protein_id=OAR20484.1;transl_table=11
LYPH01000044.1	Genbank	gene	51025	51279	.	+	.	ID=gene-A8144_02365;Name=A8144_02365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02365
LYPH01000044.1	GeneMarkS+	CDS	51025	51279	.	+	0	ID=cds-OAR20485.1;Parent=gene-A8144_02365;Dbxref=NCBI_GP:OAR20485.1;Name=OAR20485.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02365;product=hypothetical protein;protein_id=OAR20485.1;transl_table=11
LYPH01000044.1	Genbank	gene	51469	51672	.	-	.	ID=gene-A8144_02370;Name=A8144_02370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02370
LYPH01000044.1	GeneMarkS+	CDS	51469	51672	.	-	0	ID=cds-OAR20486.1;Parent=gene-A8144_02370;Dbxref=NCBI_GP:OAR20486.1;Name=OAR20486.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02370;product=hypothetical protein;protein_id=OAR20486.1;transl_table=11
LYPH01000044.1	Genbank	gene	51997	52296	.	+	.	ID=gene-A8144_02375;Name=A8144_02375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02375
LYPH01000044.1	GeneMarkS+	CDS	51997	52296	.	+	0	ID=cds-OAR20487.1;Parent=gene-A8144_02375;Dbxref=NCBI_GP:OAR20487.1;Name=OAR20487.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02375;product=hypothetical protein;protein_id=OAR20487.1;transl_table=11
LYPH01000044.1	Genbank	gene	52465	52659	.	+	.	ID=gene-A8144_02380;Name=A8144_02380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02380
LYPH01000044.1	GeneMarkS+	CDS	52465	52659	.	+	0	ID=cds-OAR20488.1;Parent=gene-A8144_02380;Dbxref=NCBI_GP:OAR20488.1;Name=OAR20488.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02380;product=hypothetical protein;protein_id=OAR20488.1;transl_table=11
LYPH01000044.1	Genbank	gene	54059	54132	.	-	.	ID=gene-A8144_02385;Name=A8144_02385;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_02385
LYPH01000044.1	tRNAscan-SE	tRNA	54059	54132	.	-	.	ID=rna-A8144_02385;Parent=gene-A8144_02385;anticodon=(pos:complement(54098..54100));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_02385;product=tRNA-Gly
LYPH01000044.1	tRNAscan-SE	exon	54059	54132	.	-	.	ID=exon-A8144_02385-1;Parent=rna-A8144_02385;anticodon=(pos:complement(54098..54100));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_02385;product=tRNA-Gly
LYPH01000044.1	Genbank	gene	54967	55539	.	+	.	ID=gene-A8144_02390;Name=A8144_02390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02390
LYPH01000044.1	Protein Homology	CDS	54967	55539	.	+	0	ID=cds-OAR20489.1;Parent=gene-A8144_02390;Dbxref=NCBI_GP:OAR20489.1;Name=OAR20489.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009935715.1;locus_tag=A8144_02390;product=deoxycytidine triphosphate deaminase;protein_id=OAR20489.1;transl_table=11
LYPH01000044.1	Genbank	gene	56185	56439	.	+	.	ID=gene-A8144_02395;Name=A8144_02395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02395
LYPH01000044.1	GeneMarkS+	CDS	56185	56439	.	+	0	ID=cds-OAR20490.1;Parent=gene-A8144_02395;Dbxref=NCBI_GP:OAR20490.1;Name=OAR20490.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02395;product=hypothetical protein;protein_id=OAR20490.1;transl_table=11
LYPH01000044.1	Genbank	gene	57707	58072	.	-	.	ID=gene-A8144_02400;Name=A8144_02400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02400
LYPH01000044.1	GeneMarkS+	CDS	57707	58072	.	-	0	ID=cds-OAR20491.1;Parent=gene-A8144_02400;Dbxref=NCBI_GP:OAR20491.1;Name=OAR20491.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02400;product=hypothetical protein;protein_id=OAR20491.1;transl_table=11
LYPH01000044.1	Genbank	gene	58322	59188	.	+	.	ID=gene-A8144_02405;Name=A8144_02405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02405
LYPH01000044.1	Protein Homology	CDS	58322	59188	.	+	0	ID=cds-OAR20492.1;Parent=gene-A8144_02405;Dbxref=NCBI_GP:OAR20492.1;Name=OAR20492.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908937.1;locus_tag=A8144_02405;product=glucose-1-phosphate thymidylyltransferase;protein_id=OAR20492.1;transl_table=11
LYPH01000044.1	Genbank	gene	59343	60632	.	-	.	ID=gene-A8144_02410;Name=A8144_02410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02410
LYPH01000044.1	Protein Homology	CDS	59343	60632	.	-	0	ID=cds-OAR20493.1;Parent=gene-A8144_02410;Dbxref=NCBI_GP:OAR20493.1;Name=OAR20493.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020788876.1;locus_tag=A8144_02410;product=aminotransferase;protein_id=OAR20493.1;transl_table=11
LYPH01000044.1	Genbank	gene	60665	63307	.	-	.	ID=gene-A8144_02415;Name=A8144_02415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02415
LYPH01000044.1	Protein Homology	CDS	60665	63307	.	-	0	ID=cds-OAR20494.1;Parent=gene-A8144_02415;Dbxref=NCBI_GP:OAR20494.1;Name=OAR20494.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908935.1;locus_tag=A8144_02415;product=FeS-binding protein;protein_id=OAR20494.1;transl_table=11
LYPH01000044.1	Genbank	gene	64882	65364	.	-	.	ID=gene-A8144_02420;Name=A8144_02420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02420
LYPH01000044.1	GeneMarkS+	CDS	64882	65364	.	-	0	ID=cds-OAR20495.1;Parent=gene-A8144_02420;Dbxref=NCBI_GP:OAR20495.1;Name=OAR20495.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02420;product=hypothetical protein;protein_id=OAR20495.1;transl_table=11
LYPH01000044.1	Genbank	gene	65453	66025	.	-	.	ID=gene-A8144_02425;Name=A8144_02425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02425
LYPH01000044.1	Protein Homology	CDS	65453	66025	.	-	0	ID=cds-OAR20496.1;Parent=gene-A8144_02425;Dbxref=NCBI_GP:OAR20496.1;Name=OAR20496.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014712486.1;locus_tag=A8144_02425;product=hypothetical protein;protein_id=OAR20496.1;transl_table=11
LYPH01000044.1	Genbank	pseudogene	66196	66604	.	-	.	ID=gene-A8144_02430;Name=A8144_02430;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02430;pseudo=true
LYPH01000044.1	Protein Homology	CDS	66196	66604	.	-	0	ID=cds-A8144_02430;Parent=gene-A8144_02430;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_013470776.1;locus_tag=A8144_02430;product=4-hydroxybenzoyl-CoA reductase subunit gamma;pseudo=true;transl_table=11
LYPH01000044.1	Genbank	gene	67510	67695	.	+	.	ID=gene-A8144_02435;Name=A8144_02435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02435
LYPH01000044.1	GeneMarkS+	CDS	67510	67695	.	+	0	ID=cds-OAR20497.1;Parent=gene-A8144_02435;Dbxref=NCBI_GP:OAR20497.1;Name=OAR20497.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02435;product=hypothetical protein;protein_id=OAR20497.1;transl_table=11
LYPH01000044.1	Genbank	gene	68209	68868	.	-	.	ID=gene-A8144_02440;Name=A8144_02440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02440
LYPH01000044.1	Protein Homology	CDS	68209	68868	.	-	0	ID=cds-OAR20498.1;Parent=gene-A8144_02440;Dbxref=NCBI_GP:OAR20498.1;Name=OAR20498.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908934.1;locus_tag=A8144_02440;product=enoyl-CoA hydratase;protein_id=OAR20498.1;transl_table=11
LYPH01000044.1	Genbank	gene	68898	69371	.	-	.	ID=gene-A8144_02445;Name=A8144_02445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02445
LYPH01000044.1	Protein Homology	CDS	68898	69371	.	-	0	ID=cds-OAR20499.1;Parent=gene-A8144_02445;Dbxref=NCBI_GP:OAR20499.1;Name=OAR20499.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908933.1;locus_tag=A8144_02445;product=TetR family transcriptional regulator;protein_id=OAR20499.1;transl_table=11
LYPH01000044.1	Genbank	gene	70060	71922	.	+	.	ID=gene-A8144_02450;Name=A8144_02450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02450
LYPH01000044.1	Protein Homology	CDS	70060	71922	.	+	0	ID=cds-OAR20500.1;Parent=gene-A8144_02450;Dbxref=NCBI_GP:OAR20500.1;Name=OAR20500.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908932.1;locus_tag=A8144_02450;product=molecular chaperone DnaK;protein_id=OAR20500.1;transl_table=11
LYPH01000044.1	Genbank	gene	71919	72608	.	+	.	ID=gene-A8144_02455;Name=A8144_02455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02455
LYPH01000044.1	Protein Homology	CDS	71919	72608	.	+	0	ID=cds-OAR20501.1;Parent=gene-A8144_02455;Dbxref=NCBI_GP:OAR20501.1;Name=OAR20501.1;Note=with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins%3B may act as a thermosensor;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CB23.1;locus_tag=A8144_02455;product=nucleotide exchange factor GrpE;protein_id=OAR20501.1;transl_table=11
LYPH01000044.1	Genbank	gene	72622	73788	.	+	.	ID=gene-A8144_02460;Name=A8144_02460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02460
LYPH01000044.1	Protein Homology	CDS	72622	73788	.	+	0	ID=cds-OAR20502.1;Parent=gene-A8144_02460;Dbxref=NCBI_GP:OAR20502.1;Name=OAR20502.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q02605.2;locus_tag=A8144_02460;product=molecular chaperone DnaJ;protein_id=OAR20502.1;transl_table=11
LYPH01000044.1	Genbank	gene	73795	74190	.	+	.	ID=gene-A8144_02465;Name=A8144_02465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02465
LYPH01000044.1	Protein Homology	CDS	73795	74190	.	+	0	ID=cds-OAR20503.1;Parent=gene-A8144_02465;Dbxref=NCBI_GP:OAR20503.1;Name=OAR20503.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012392599.1;locus_tag=A8144_02465;product=MerR family transcriptional regulator;protein_id=OAR20503.1;transl_table=11
LYPH01000044.1	Genbank	gene	75790	76791	.	-	.	ID=gene-A8144_02470;Name=A8144_02470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02470
LYPH01000044.1	Protein Homology	CDS	75790	76791	.	-	0	ID=cds-OAR20535.1;Parent=gene-A8144_02470;Dbxref=NCBI_GP:OAR20535.1;Name=OAR20535.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908928.1;locus_tag=A8144_02470;product=hypothetical protein;protein_id=OAR20535.1;transl_table=11
LYPH01000044.1	Genbank	gene	77722	80268	.	+	.	ID=gene-A8144_02475;Name=A8144_02475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02475
LYPH01000044.1	Protein Homology	CDS	77722	80268	.	+	0	ID=cds-OAR20536.1;Parent=gene-A8144_02475;Dbxref=NCBI_GP:OAR20536.1;Name=OAR20536.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005624268.1;locus_tag=A8144_02475;product=ATP-dependent chaperone ClpB;protein_id=OAR20536.1;transl_table=11
LYPH01000044.1	Genbank	gene	80353	81213	.	+	.	ID=gene-A8144_02480;Name=A8144_02480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02480
LYPH01000044.1	Protein Homology	CDS	80353	81213	.	+	0	ID=cds-OAR20504.1;Parent=gene-A8144_02480;Dbxref=NCBI_GP:OAR20504.1;Name=OAR20504.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908926.1;locus_tag=A8144_02480;product=hypothetical protein;protein_id=OAR20504.1;transl_table=11
LYPH01000044.1	Genbank	gene	81949	82488	.	+	.	ID=gene-A8144_02485;Name=A8144_02485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02485
LYPH01000044.1	Protein Homology	CDS	81949	82488	.	+	0	ID=cds-OAR20537.1;Parent=gene-A8144_02485;Dbxref=NCBI_GP:OAR20537.1;Name=OAR20537.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CB28.1;locus_tag=A8144_02485;product=orotate phosphoribosyltransferase;protein_id=OAR20537.1;transl_table=11
LYPH01000044.1	Genbank	pseudogene	82539	83387	.	+	.	ID=gene-A8144_02490;Name=A8144_02490;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02490;pseudo=true
LYPH01000044.1	Protein Homology	CDS	82539	83387	.	+	0	ID=cds-A8144_02490;Parent=gene-A8144_02490;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011726252.1;locus_tag=A8144_02490;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000044.1	Genbank	gene	83384	84028	.	+	.	ID=gene-A8144_02495;Name=A8144_02495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02495
LYPH01000044.1	Protein Homology	CDS	83384	84028	.	+	0	ID=cds-OAR20538.1;Parent=gene-A8144_02495;Dbxref=NCBI_GP:OAR20538.1;Name=OAR20538.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003873852.1;locus_tag=A8144_02495;product=RNA methyltransferase;protein_id=OAR20538.1;transl_table=11
LYPH01000044.1	Genbank	gene	84123	84311	.	+	.	ID=gene-A8144_02500;Name=A8144_02500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02500
LYPH01000044.1	GeneMarkS+	CDS	84123	84311	.	+	0	ID=cds-OAR20505.1;Parent=gene-A8144_02500;Dbxref=NCBI_GP:OAR20505.1;Name=OAR20505.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02500;product=hypothetical protein;protein_id=OAR20505.1;transl_table=11
LYPH01000044.1	Genbank	gene	84995	85333	.	+	.	ID=gene-A8144_02505;Name=A8144_02505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02505
LYPH01000044.1	GeneMarkS+	CDS	84995	85333	.	+	0	ID=cds-OAR20506.1;Parent=gene-A8144_02505;Dbxref=NCBI_GP:OAR20506.1;Name=OAR20506.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02505;product=hypothetical protein;protein_id=OAR20506.1;transl_table=11
LYPH01000044.1	Genbank	gene	85609	85857	.	+	.	ID=gene-A8144_02510;Name=A8144_02510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02510
LYPH01000044.1	GeneMarkS+	CDS	85609	85857	.	+	0	ID=cds-OAR20507.1;Parent=gene-A8144_02510;Dbxref=NCBI_GP:OAR20507.1;Name=OAR20507.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02510;product=hypothetical protein;protein_id=OAR20507.1;transl_table=11
LYPH01000044.1	Genbank	pseudogene	86599	87191	.	+	.	ID=gene-A8144_02515;Name=A8144_02515;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02515;pseudo=true
LYPH01000044.1	Protein Homology	CDS	86599	87191	.	+	0	ID=cds-A8144_02515;Parent=gene-A8144_02515;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015354358.1;locus_tag=A8144_02515;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000044.1	Genbank	pseudogene	87208	88352	.	+	.	ID=gene-A8144_02520;Name=A8144_02520;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02520;pseudo=true
LYPH01000044.1	Protein Homology	CDS	87208	88352	.	+	0	ID=cds-A8144_02520;Parent=gene-A8144_02520;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015354359.1;locus_tag=A8144_02520;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000044.1	Genbank	gene	88418	88693	.	+	.	ID=gene-A8144_02525;Name=A8144_02525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02525
LYPH01000044.1	GeneMarkS+	CDS	88418	88693	.	+	0	ID=cds-OAR20508.1;Parent=gene-A8144_02525;Dbxref=NCBI_GP:OAR20508.1;Name=OAR20508.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02525;product=hypothetical protein;protein_id=OAR20508.1;transl_table=11
LYPH01000044.1	Genbank	gene	89793	90017	.	-	.	ID=gene-A8144_02530;Name=A8144_02530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02530
LYPH01000044.1	GeneMarkS+	CDS	89793	90017	.	-	0	ID=cds-OAR20509.1;Parent=gene-A8144_02530;Dbxref=NCBI_GP:OAR20509.1;Name=OAR20509.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02530;product=hypothetical protein;protein_id=OAR20509.1;transl_table=11
LYPH01000044.1	Genbank	pseudogene	90903	91334	.	-	.	ID=gene-A8144_02535;Name=A8144_02535;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02535;pseudo=true
LYPH01000044.1	Protein Homology	CDS	90903	91334	.	-	0	ID=cds-A8144_02535;Parent=gene-A8144_02535;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003907236.1;locus_tag=A8144_02535;product=adenosylcobinamide kinase/adenosylcobinamide phosphate guanyltransferase;pseudo=true;transl_table=11
LYPH01000044.1	Genbank	gene	91343	91564	.	-	.	ID=gene-A8144_02540;Name=A8144_02540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02540
LYPH01000044.1	GeneMarkS+	CDS	91343	91564	.	-	0	ID=cds-OAR20510.1;Parent=gene-A8144_02540;Dbxref=NCBI_GP:OAR20510.1;Name=OAR20510.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02540;product=hypothetical protein;protein_id=OAR20510.1;transl_table=11
LYPH01000044.1	Genbank	gene	91890	93608	.	-	.	ID=gene-A8144_02545;Name=A8144_02545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02545
LYPH01000044.1	Protein Homology	CDS	91890	93608	.	-	0	ID=cds-OAR20511.1;Parent=gene-A8144_02545;Dbxref=NCBI_GP:OAR20511.1;Name=OAR20511.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908560.1;locus_tag=A8144_02545;product=hypothetical protein;protein_id=OAR20511.1;transl_table=11
LYPH01000044.1	cmsearch	binding_site	93725	93905	.	-	.	ID=id-LYPH01000044.1:93725..93905;Dbxref=RFAM:RF00174;Note=cobalamin riboswitch;bound_moiety=adenosylcobalamin;gbkey=misc_binding;inference=COORDINATES: profile:INFERNAL:1.1.1
LYPH01000044.1	Genbank	gene	94255	94632	.	+	.	ID=gene-A8144_02550;Name=A8144_02550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02550
LYPH01000044.1	Protein Homology	CDS	94255	94632	.	+	0	ID=cds-OAR20539.1;Parent=gene-A8144_02550;Dbxref=NCBI_GP:OAR20539.1;Name=OAR20539.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908561.1;locus_tag=A8144_02550;product=hypothetical protein;protein_id=OAR20539.1;transl_table=11
LYPH01000044.1	Genbank	gene	95978	96310	.	-	.	ID=gene-A8144_02555;Name=A8144_02555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02555
LYPH01000044.1	GeneMarkS+	CDS	95978	96310	.	-	0	ID=cds-OAR20512.1;Parent=gene-A8144_02555;Dbxref=NCBI_GP:OAR20512.1;Name=OAR20512.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02555;product=hypothetical protein;protein_id=OAR20512.1;transl_table=11
LYPH01000044.1	Genbank	gene	97145	97363	.	+	.	ID=gene-A8144_02560;Name=A8144_02560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02560
LYPH01000044.1	GeneMarkS+	CDS	97145	97363	.	+	0	ID=cds-OAR20513.1;Parent=gene-A8144_02560;Dbxref=NCBI_GP:OAR20513.1;Name=OAR20513.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02560;product=hypothetical protein;protein_id=OAR20513.1;transl_table=11
LYPH01000044.1	Genbank	gene	98844	99644	.	-	.	ID=gene-A8144_02565;Name=A8144_02565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02565
LYPH01000044.1	Protein Homology	CDS	98844	99644	.	-	0	ID=cds-OAR20514.1;Parent=gene-A8144_02565;Dbxref=NCBI_GP:OAR20514.1;Name=OAR20514.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908562.1;locus_tag=A8144_02565;product=type I methionyl aminopeptidase;protein_id=OAR20514.1;transl_table=11
LYPH01000044.1	Genbank	gene	99656	100201	.	-	.	ID=gene-A8144_02570;Name=A8144_02570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02570
LYPH01000044.1	Protein Homology	CDS	99656	100201	.	-	0	ID=cds-OAR20515.1;Parent=gene-A8144_02570;Dbxref=NCBI_GP:OAR20515.1;Name=OAR20515.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008260542.1;locus_tag=A8144_02570;product=adenylate kinase;protein_id=OAR20515.1;transl_table=11
LYPH01000044.1	Genbank	gene	100198	101514	.	-	.	ID=gene-A8144_02575;Name=A8144_02575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02575
LYPH01000044.1	Protein Homology	CDS	100198	101514	.	-	0	ID=cds-OAR20516.1;Parent=gene-A8144_02575;Dbxref=NCBI_GP:OAR20516.1;Name=OAR20516.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003919325.1;locus_tag=A8144_02575;product=preprotein translocase subunit SecY;protein_id=OAR20516.1;transl_table=11
LYPH01000044.1	Genbank	gene	102253	102513	.	+	.	ID=gene-A8144_02580;Name=A8144_02580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02580
LYPH01000044.1	GeneMarkS+	CDS	102253	102513	.	+	0	ID=cds-OAR20517.1;Parent=gene-A8144_02580;Dbxref=NCBI_GP:OAR20517.1;Name=OAR20517.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02580;product=hypothetical protein;protein_id=OAR20517.1;transl_table=11
LYPH01000044.1	Genbank	gene	102658	103341	.	-	.	ID=gene-A8144_02585;Name=A8144_02585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02585
LYPH01000044.1	Protein Homology	CDS	102658	103341	.	-	0	ID=cds-OAR20518.1;Parent=gene-A8144_02585;Dbxref=NCBI_GP:OAR20518.1;Name=OAR20518.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908565.1;locus_tag=A8144_02585;product=acetyltransferase;protein_id=OAR20518.1;transl_table=11
LYPH01000044.1	Genbank	gene	103451	103723	.	-	.	ID=gene-A8144_02590;Name=A8144_02590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02590
LYPH01000044.1	GeneMarkS+	CDS	103451	103723	.	-	0	ID=cds-OAR20519.1;Parent=gene-A8144_02590;Dbxref=NCBI_GP:OAR20519.1;Name=OAR20519.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02590;product=hypothetical protein;protein_id=OAR20519.1;transl_table=11
LYPH01000044.1	Genbank	gene	104022	104378	.	-	.	ID=gene-A8144_02595;Name=A8144_02595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02595
LYPH01000044.1	GeneMarkS+	CDS	104022	104378	.	-	0	ID=cds-OAR20520.1;Parent=gene-A8144_02595;Dbxref=NCBI_GP:OAR20520.1;Name=OAR20520.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02595;product=hypothetical protein;protein_id=OAR20520.1;transl_table=11
LYPH01000044.1	Genbank	gene	104686	104895	.	+	.	ID=gene-A8144_02600;Name=A8144_02600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02600
LYPH01000044.1	GeneMarkS+	CDS	104686	104895	.	+	0	ID=cds-OAR20521.1;Parent=gene-A8144_02600;Dbxref=NCBI_GP:OAR20521.1;Name=OAR20521.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02600;product=hypothetical protein;protein_id=OAR20521.1;transl_table=11
LYPH01000044.1	Genbank	gene	105010	105279	.	+	.	ID=gene-A8144_02605;Name=A8144_02605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02605
LYPH01000044.1	GeneMarkS+	CDS	105010	105279	.	+	0	ID=cds-OAR20522.1;Parent=gene-A8144_02605;Dbxref=NCBI_GP:OAR20522.1;Name=OAR20522.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02605;product=hypothetical protein;protein_id=OAR20522.1;transl_table=11
LYPH01000044.1	Genbank	gene	105531	105797	.	+	.	ID=gene-A8144_02610;Name=A8144_02610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02610
LYPH01000044.1	GeneMarkS+	CDS	105531	105797	.	+	0	ID=cds-OAR20523.1;Parent=gene-A8144_02610;Dbxref=NCBI_GP:OAR20523.1;Name=OAR20523.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02610;product=hypothetical protein;protein_id=OAR20523.1;transl_table=11
LYPH01000044.1	Genbank	gene	106378	108186	.	-	.	ID=gene-A8144_02615;Name=A8144_02615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02615
LYPH01000044.1	Protein Homology	CDS	106378	108186	.	-	0	ID=cds-OAR20540.1;Parent=gene-A8144_02615;Dbxref=NCBI_GP:OAR20540.1;Name=OAR20540.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908566.1;locus_tag=A8144_02615;product=signal peptide peptidase SppA;protein_id=OAR20540.1;transl_table=11
LYPH01000044.1	Genbank	gene	108422	108862	.	-	.	ID=gene-A8144_02620;Name=A8144_02620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02620
LYPH01000044.1	Protein Homology	CDS	108422	108862	.	-	0	ID=cds-OAR20524.1;Parent=gene-A8144_02620;Dbxref=NCBI_GP:OAR20524.1;Name=OAR20524.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:B2HCU0.1;locus_tag=A8144_02620;product=50S ribosomal protein L15;protein_id=OAR20524.1;transl_table=11
LYPH01000044.1	Genbank	gene	108863	109078	.	-	.	ID=gene-A8144_02625;Name=A8144_02625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02625
LYPH01000044.1	Protein Homology	CDS	108863	109078	.	-	0	ID=cds-OAR20525.1;Parent=gene-A8144_02625;Dbxref=NCBI_GP:OAR20525.1;Name=OAR20525.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33001.1;locus_tag=A8144_02625;product=50S ribosomal protein L30;protein_id=OAR20525.1;transl_table=11
LYPH01000044.1	Genbank	gene	109081	109734	.	-	.	ID=gene-A8144_02630;Name=A8144_02630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02630
LYPH01000044.1	Protein Homology	CDS	109081	109734	.	-	0	ID=cds-OAR20526.1;Parent=gene-A8144_02630;Dbxref=NCBI_GP:OAR20526.1;Name=OAR20526.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33000.1;locus_tag=A8144_02630;product=30S ribosomal protein S5;protein_id=OAR20526.1;transl_table=11
LYPH01000044.1	Genbank	gene	109763	110131	.	-	.	ID=gene-A8144_02635;Name=A8144_02635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02635
LYPH01000044.1	Protein Homology	CDS	109763	110131	.	-	0	ID=cds-OAR20527.1;Parent=gene-A8144_02635;Dbxref=NCBI_GP:OAR20527.1;Name=OAR20527.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008260609.1;locus_tag=A8144_02635;product=50S ribosomal protein L18;protein_id=OAR20527.1;transl_table=11
LYPH01000044.1	Genbank	gene	110134	110673	.	-	.	ID=gene-A8144_02640;Name=A8144_02640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02640
LYPH01000044.1	Protein Homology	CDS	110134	110673	.	-	0	ID=cds-OAR20528.1;Parent=gene-A8144_02640;Dbxref=NCBI_GP:OAR20528.1;Name=OAR20528.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_006245132.1;locus_tag=A8144_02640;product=50S ribosomal protein L6;protein_id=OAR20528.1;transl_table=11
LYPH01000044.1	Genbank	gene	110699	111097	.	-	.	ID=gene-A8144_02645;Name=A8144_02645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02645
LYPH01000044.1	Protein Homology	CDS	110699	111097	.	-	0	ID=cds-OAR20529.1;Parent=gene-A8144_02645;Dbxref=NCBI_GP:OAR20529.1;Name=OAR20529.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008375945.1;locus_tag=A8144_02645;product=30S ribosomal protein S8;protein_id=OAR20529.1;transl_table=11
LYPH01000044.1	Genbank	gene	111180	111365	.	-	.	ID=gene-A8144_02650;Name=rpsN;gbkey=Gene;gene=rpsN;gene_biotype=protein_coding;locus_tag=A8144_02650
LYPH01000044.1	Protein Homology	CDS	111180	111365	.	-	0	ID=cds-OAR20530.1;Parent=gene-A8144_02650;Dbxref=NCBI_GP:OAR20530.1;Name=OAR20530.1;Note=located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit%3B similar to what is observed with proteins L31 and L33%2C some proteins in this family contain CXXC motifs that are involved in zinc binding%3B if two copies are present in a genome%2C then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc%3B the proteins in this group appear to contain the zinc-binding motif;gbkey=CDS;gene=rpsN;inference=EXISTENCE: similar to AA sequence:SwissProt:P66418.1;locus_tag=A8144_02650;product=30S ribosomal protein S14;protein_id=OAR20530.1;transl_table=11
LYPH01000044.1	Genbank	gene	111371	111934	.	-	.	ID=gene-A8144_02655;Name=A8144_02655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02655
LYPH01000044.1	Protein Homology	CDS	111371	111934	.	-	0	ID=cds-OAR20531.1;Parent=gene-A8144_02655;Dbxref=NCBI_GP:OAR20531.1;Name=OAR20531.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019510999.1;locus_tag=A8144_02655;product=50S ribosomal protein L5;protein_id=OAR20531.1;transl_table=11
LYPH01000044.1	Genbank	gene	111935	112252	.	-	.	ID=gene-A8144_02660;Name=A8144_02660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02660
LYPH01000044.1	Protein Homology	CDS	111935	112252	.	-	0	ID=cds-OAR20532.1;Parent=gene-A8144_02660;Dbxref=NCBI_GP:OAR20532.1;Name=OAR20532.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003938081.1;locus_tag=A8144_02660;product=50S ribosomal protein L24;protein_id=OAR20532.1;transl_table=11
LYPH01000044.1	Genbank	gene	112253	112621	.	-	.	ID=gene-A8144_02665;Name=A8144_02665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02665
LYPH01000044.1	Protein Homology	CDS	112253	112621	.	-	0	ID=cds-OAR20533.1;Parent=gene-A8144_02665;Dbxref=NCBI_GP:OAR20533.1;Name=OAR20533.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:A8M519.1;locus_tag=A8144_02665;product=50S ribosomal protein L14;protein_id=OAR20533.1;transl_table=11
LYPH01000044.1	Genbank	gene	113281	113652	.	+	.	ID=gene-A8144_02670;Name=A8144_02670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02670
LYPH01000044.1	GeneMarkS+	CDS	113281	113652	.	+	0	ID=cds-OAR20534.1;Parent=gene-A8144_02670;Dbxref=NCBI_GP:OAR20534.1;Name=OAR20534.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02670;product=hypothetical protein;protein_id=OAR20534.1;transl_table=11
##sequence-region LYPH01000045.1 1 45502
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000045.1	Genbank	region	1	45502	.	+	.	ID=LYPH01000045.1:1..45502;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000045.1	Genbank	gene	988	1305	.	-	.	ID=gene-A8144_10590;Name=A8144_10590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10590
LYPH01000045.1	GeneMarkS+	CDS	988	1305	.	-	0	ID=cds-OAR20413.1;Parent=gene-A8144_10590;Dbxref=NCBI_GP:OAR20413.1;Name=OAR20413.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10590;product=hypothetical protein;protein_id=OAR20413.1;transl_table=11
LYPH01000045.1	Genbank	gene	1306	1530	.	-	.	ID=gene-A8144_10595;Name=A8144_10595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10595
LYPH01000045.1	GeneMarkS+	CDS	1306	1530	.	-	0	ID=cds-OAR20414.1;Parent=gene-A8144_10595;Dbxref=NCBI_GP:OAR20414.1;Name=OAR20414.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10595;product=hypothetical protein;protein_id=OAR20414.1;transl_table=11
LYPH01000045.1	Genbank	gene	1707	2027	.	-	.	ID=gene-A8144_10600;Name=A8144_10600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10600
LYPH01000045.1	GeneMarkS+	CDS	1707	2027	.	-	0	ID=cds-OAR20415.1;Parent=gene-A8144_10600;Dbxref=NCBI_GP:OAR20415.1;Name=OAR20415.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10600;product=hypothetical protein;protein_id=OAR20415.1;transl_table=11
LYPH01000045.1	Genbank	gene	2570	2761	.	-	.	ID=gene-A8144_10605;Name=A8144_10605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10605
LYPH01000045.1	GeneMarkS+	CDS	2570	2761	.	-	0	ID=cds-OAR20416.1;Parent=gene-A8144_10605;Dbxref=NCBI_GP:OAR20416.1;Name=OAR20416.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10605;product=hypothetical protein;protein_id=OAR20416.1;transl_table=11
LYPH01000045.1	Genbank	gene	2758	3150	.	-	.	ID=gene-A8144_10610;Name=A8144_10610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10610
LYPH01000045.1	GeneMarkS+	CDS	2758	3150	.	-	0	ID=cds-OAR20417.1;Parent=gene-A8144_10610;Dbxref=NCBI_GP:OAR20417.1;Name=OAR20417.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10610;product=hypothetical protein;protein_id=OAR20417.1;transl_table=11
LYPH01000045.1	Genbank	pseudogene	4075	4984	.	+	.	ID=gene-A8144_10615;Name=A8144_10615;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10615;pseudo=true
LYPH01000045.1	Protein Homology	CDS	4075	4984	.	+	0	ID=cds-A8144_10615;Parent=gene-A8144_10615;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015292215.1;locus_tag=A8144_10615;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000045.1	Genbank	pseudogene	5895	6396	.	-	.	ID=gene-A8144_10620;Name=A8144_10620;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10620;pseudo=true
LYPH01000045.1	Protein Homology	CDS	5895	6396	.	-	0	ID=cds-A8144_10620;Parent=gene-A8144_10620;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011742148.1;locus_tag=A8144_10620;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000045.1	Genbank	gene	6434	7423	.	-	.	ID=gene-A8144_10625;Name=A8144_10625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10625
LYPH01000045.1	Protein Homology	CDS	6434	7423	.	-	0	ID=cds-OAR20418.1;Parent=gene-A8144_10625;Dbxref=NCBI_GP:OAR20418.1;Name=OAR20418.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46723.1;locus_tag=A8144_10625;product=delta-aminolevulinic acid dehydratase;protein_id=OAR20418.1;transl_table=11
LYPH01000045.1	Genbank	gene	7470	9146	.	-	.	ID=gene-A8144_10630;Name=A8144_10630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10630
LYPH01000045.1	Protein Homology	CDS	7470	9146	.	-	0	ID=cds-OAR20419.1;Parent=gene-A8144_10630;Dbxref=NCBI_GP:OAR20419.1;Name=OAR20419.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020788700.1;locus_tag=A8144_10630;product=bifunctional uroporphyrinogen-III C-methyltransferase/uroporphyrinogen-III synthase;protein_id=OAR20419.1;transl_table=11
LYPH01000045.1	Genbank	gene	9168	10115	.	-	.	ID=gene-A8144_10635;Name=A8144_10635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10635
LYPH01000045.1	Protein Homology	CDS	9168	10115	.	-	0	ID=cds-OAR20420.1;Parent=gene-A8144_10635;Dbxref=NCBI_GP:OAR20420.1;Name=OAR20420.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q73SS0.1;locus_tag=A8144_10635;product=hydroxymethylbilane synthase;protein_id=OAR20420.1;transl_table=11
LYPH01000045.1	Genbank	gene	10129	11532	.	-	.	ID=gene-A8144_10640;Name=A8144_10640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10640
LYPH01000045.1	Protein Homology	CDS	10129	11532	.	-	0	ID=cds-OAR20421.1;Parent=gene-A8144_10640;Dbxref=NCBI_GP:OAR20421.1;Name=OAR20421.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46724.1;locus_tag=A8144_10640;product=glutamyl-tRNA reductase;protein_id=OAR20421.1;transl_table=11
LYPH01000045.1	Genbank	gene	12634	13536	.	+	.	ID=gene-A8144_10645;Name=A8144_10645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10645
LYPH01000045.1	Protein Homology	CDS	12634	13536	.	+	0	ID=cds-OAR20422.1;Parent=gene-A8144_10645;Dbxref=NCBI_GP:OAR20422.1;Name=OAR20422.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49823.1;locus_tag=A8144_10645;product=hydrolase;protein_id=OAR20422.1;transl_table=11
LYPH01000045.1	Genbank	gene	13640	14140	.	+	.	ID=gene-A8144_10650;Name=A8144_10650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10650
LYPH01000045.1	Protein Homology	CDS	13640	14140	.	+	0	ID=cds-OAR20423.1;Parent=gene-A8144_10650;Dbxref=NCBI_GP:OAR20423.1;Name=OAR20423.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007768227.1;locus_tag=A8144_10650;product=hypothetical protein;protein_id=OAR20423.1;transl_table=11
LYPH01000045.1	Genbank	gene	14151	15077	.	+	.	ID=gene-A8144_10655;Name=A8144_10655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10655
LYPH01000045.1	Protein Homology	CDS	14151	15077	.	+	0	ID=cds-OAR20424.1;Parent=gene-A8144_10655;Dbxref=NCBI_GP:OAR20424.1;Name=OAR20424.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49807.1;locus_tag=A8144_10655;product=SAM-dependent methyltransferase;protein_id=OAR20424.1;transl_table=11
LYPH01000045.1	Genbank	gene	15106	16185	.	-	.	ID=gene-A8144_10660;Name=A8144_10660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10660
LYPH01000045.1	Protein Homology	CDS	15106	16185	.	-	0	ID=cds-OAR20447.1;Parent=gene-A8144_10660;Dbxref=NCBI_GP:OAR20447.1;Name=OAR20447.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010950196.1;locus_tag=A8144_10660;product=hypothetical protein;protein_id=OAR20447.1;transl_table=11
LYPH01000045.1	Genbank	gene	16215	17309	.	-	.	ID=gene-A8144_10665;Name=A8144_10665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10665
LYPH01000045.1	Protein Homology	CDS	16215	17309	.	-	0	ID=cds-OAR20425.1;Parent=gene-A8144_10665;Dbxref=NCBI_GP:OAR20425.1;Name=OAR20425.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003873708.1;locus_tag=A8144_10665;product=hypothetical protein;protein_id=OAR20425.1;transl_table=11
LYPH01000045.1	Genbank	gene	17380	17481	.	-	.	ID=gene-A8144_10670;Name=A8144_10670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10670
LYPH01000045.1	Protein Homology	CDS	17380	17481	.	-	0	ID=cds-OAR20448.1;Parent=gene-A8144_10670;Dbxref=NCBI_GP:OAR20448.1;Name=OAR20448.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P0A5C9.1;locus_tag=A8144_10670;product=hypothetical protein;protein_id=OAR20448.1;transl_table=11
LYPH01000045.1	Genbank	gene	17724	17984	.	-	.	ID=gene-A8144_10675;Name=A8144_10675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10675
LYPH01000045.1	Protein Homology	CDS	17724	17984	.	-	0	ID=cds-OAR20426.1;Parent=gene-A8144_10675;Dbxref=NCBI_GP:OAR20426.1;Name=OAR20426.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015304597.1;locus_tag=A8144_10675;product=DNA-binding protein;protein_id=OAR20426.1;transl_table=11
LYPH01000045.1	Genbank	gene	18125	19009	.	-	.	ID=gene-A8144_10680;Name=A8144_10680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10680
LYPH01000045.1	Protein Homology	CDS	18125	19009	.	-	0	ID=cds-OAR20427.1;Parent=gene-A8144_10680;Dbxref=NCBI_GP:OAR20427.1;Name=OAR20427.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007167649.1;locus_tag=A8144_10680;product=pyrroline-5-carboxylate reductase;protein_id=OAR20427.1;transl_table=11
LYPH01000045.1	Genbank	gene	19770	20612	.	-	.	ID=gene-A8144_10685;Name=A8144_10685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10685
LYPH01000045.1	Protein Homology	CDS	19770	20612	.	-	0	ID=cds-OAR20428.1;Parent=gene-A8144_10685;Dbxref=NCBI_GP:OAR20428.1;Name=OAR20428.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003932736.1;locus_tag=A8144_10685;product=hypothetical protein;protein_id=OAR20428.1;transl_table=11
LYPH01000045.1	Genbank	gene	20643	21710	.	-	.	ID=gene-A8144_10690;Name=A8144_10690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10690
LYPH01000045.1	Protein Homology	CDS	20643	21710	.	-	0	ID=cds-OAR20429.1;Parent=gene-A8144_10690;Dbxref=NCBI_GP:OAR20429.1;Name=OAR20429.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P54580.2;locus_tag=A8144_10690;product=hypothetical protein;protein_id=OAR20429.1;transl_table=11
LYPH01000045.1	Genbank	gene	21707	22726	.	-	.	ID=gene-A8144_10695;Name=A8144_10695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10695
LYPH01000045.1	Protein Homology	CDS	21707	22726	.	-	0	ID=cds-OAR20430.1;Parent=gene-A8144_10695;Dbxref=NCBI_GP:OAR20430.1;Name=OAR20430.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P54882.2;locus_tag=A8144_10695;product=hypothetical protein;protein_id=OAR20430.1;transl_table=11
LYPH01000045.1	Genbank	gene	22830	23663	.	+	.	ID=gene-A8144_10700;Name=A8144_10700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10700
LYPH01000045.1	Protein Homology	CDS	22830	23663	.	+	0	ID=cds-OAR20449.1;Parent=gene-A8144_10700;Dbxref=NCBI_GP:OAR20449.1;Name=OAR20449.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P54579.2;locus_tag=A8144_10700;product=hypothetical protein;protein_id=OAR20449.1;transl_table=11
LYPH01000045.1	Genbank	pseudogene	23752	24438	.	-	.	ID=gene-A8144_10705;Name=A8144_10705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10705;pseudo=true
LYPH01000045.1	Protein Homology	CDS	23752	24438	.	-	0	ID=cds-A8144_10705;Parent=gene-A8144_10705;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P67740.1;locus_tag=A8144_10705;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000045.1	Genbank	gene	24658	24960	.	+	.	ID=gene-A8144_10710;Name=A8144_10710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10710
LYPH01000045.1	GeneMarkS+	CDS	24658	24960	.	+	0	ID=cds-OAR20431.1;Parent=gene-A8144_10710;Dbxref=NCBI_GP:OAR20431.1;Name=OAR20431.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10710;product=hypothetical protein;protein_id=OAR20431.1;transl_table=11
LYPH01000045.1	Genbank	gene	25682	26050	.	-	.	ID=gene-A8144_10715;Name=A8144_10715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10715
LYPH01000045.1	GeneMarkS+	CDS	25682	26050	.	-	0	ID=cds-OAR20432.1;Parent=gene-A8144_10715;Dbxref=NCBI_GP:OAR20432.1;Name=OAR20432.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10715;product=hypothetical protein;protein_id=OAR20432.1;transl_table=11
LYPH01000045.1	Genbank	gene	26594	26917	.	+	.	ID=gene-A8144_10720;Name=A8144_10720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10720
LYPH01000045.1	GeneMarkS+	CDS	26594	26917	.	+	0	ID=cds-OAR20433.1;Parent=gene-A8144_10720;Dbxref=NCBI_GP:OAR20433.1;Name=OAR20433.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10720;product=hypothetical protein;protein_id=OAR20433.1;transl_table=11
LYPH01000045.1	Genbank	gene	27124	27720	.	-	.	ID=gene-A8144_10725;Name=A8144_10725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10725
LYPH01000045.1	Protein Homology	CDS	27124	27720	.	-	0	ID=cds-OAR20434.1;Parent=gene-A8144_10725;Dbxref=NCBI_GP:OAR20434.1;Name=OAR20434.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P54884.1;locus_tag=A8144_10725;product=DNA-binding response regulator;protein_id=OAR20434.1;transl_table=11
LYPH01000045.1	Genbank	gene	27763	29088	.	-	.	ID=gene-A8144_10730;Name=A8144_10730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10730
LYPH01000045.1	Protein Homology	CDS	27763	29088	.	-	0	ID=cds-OAR20450.1;Parent=gene-A8144_10730;Dbxref=NCBI_GP:OAR20450.1;Name=OAR20450.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908900.1;locus_tag=A8144_10730;product=two-component sensor histidine kinase;protein_id=OAR20450.1;transl_table=11
LYPH01000045.1	Genbank	gene	29251	29994	.	-	.	ID=gene-A8144_10735;Name=A8144_10735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10735
LYPH01000045.1	Protein Homology	CDS	29251	29994	.	-	0	ID=cds-OAR20435.1;Parent=gene-A8144_10735;Dbxref=NCBI_GP:OAR20435.1;Name=OAR20435.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P53531.1;locus_tag=A8144_10735;product=phosphoglyceromutase;protein_id=OAR20435.1;transl_table=11
LYPH01000045.1	Genbank	gene	30007	30561	.	-	.	ID=gene-A8144_10740;Name=A8144_10740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10740
LYPH01000045.1	Protein Homology	CDS	30007	30561	.	-	0	ID=cds-OAR20436.1;Parent=gene-A8144_10740;Dbxref=NCBI_GP:OAR20436.1;Name=OAR20436.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P54139.1;locus_tag=A8144_10740;product=histidine kinase;protein_id=OAR20436.1;transl_table=11
LYPH01000045.1	Genbank	gene	30635	31921	.	-	.	ID=gene-A8144_10745;Name=A8144_10745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10745
LYPH01000045.1	Protein Homology	CDS	30635	31921	.	-	0	ID=cds-OAR20451.1;Parent=gene-A8144_10745;Dbxref=NCBI_GP:OAR20451.1;Name=OAR20451.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P54138.2;locus_tag=A8144_10745;product=D-inositol-3-phosphate glycosyltransferase;protein_id=OAR20451.1;transl_table=11
LYPH01000045.1	Genbank	pseudogene	32035	33032	.	-	.	ID=gene-A8144_10750;Name=A8144_10750;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10750;pseudo=true
LYPH01000045.1	Protein Homology	CDS	32035	33032	.	-	0	ID=cds-A8144_10750;Parent=gene-A8144_10750;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003910135.1;locus_tag=A8144_10750;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000045.1	Genbank	pseudogene	33261	34034	.	+	.	ID=gene-A8144_10755;Name=A8144_10755;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10755;pseudo=true
LYPH01000045.1	Protein Homology	CDS	33261	34034	.	+	0	ID=cds-A8144_10755;Parent=gene-A8144_10755;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_013805424.1;locus_tag=A8144_10755;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000045.1	Genbank	gene	34018	35343	.	-	.	ID=gene-A8144_10760;Name=A8144_10760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10760
LYPH01000045.1	Protein Homology	CDS	34018	35343	.	-	0	ID=cds-OAR20437.1;Parent=gene-A8144_10760;Dbxref=NCBI_GP:OAR20437.1;Name=OAR20437.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908904.1;locus_tag=A8144_10760;product=L%2CD-transpeptidase;protein_id=OAR20437.1;transl_table=11
LYPH01000045.1	Genbank	gene	35424	36527	.	-	.	ID=gene-A8144_10765;Name=A8144_10765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10765
LYPH01000045.1	Protein Homology	CDS	35424	36527	.	-	0	ID=cds-OAR20438.1;Parent=gene-A8144_10765;Dbxref=NCBI_GP:OAR20438.1;Name=OAR20438.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CB48.1;locus_tag=A8144_10765;product=UDP-N-acetylenolpyruvoylglucosamine reductase;protein_id=OAR20438.1;transl_table=11
LYPH01000045.1	Genbank	gene	36828	37067	.	+	.	ID=gene-A8144_10770;Name=A8144_10770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10770
LYPH01000045.1	GeneMarkS+	CDS	36828	37067	.	+	0	ID=cds-OAR20439.1;Parent=gene-A8144_10770;Dbxref=NCBI_GP:OAR20439.1;Name=OAR20439.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10770;product=hypothetical protein;protein_id=OAR20439.1;transl_table=11
LYPH01000045.1	Genbank	gene	37276	38091	.	+	.	ID=gene-A8144_10775;Name=A8144_10775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10775
LYPH01000045.1	Protein Homology	CDS	37276	38091	.	+	0	ID=cds-OAR20440.1;Parent=gene-A8144_10775;Dbxref=NCBI_GP:OAR20440.1;Name=OAR20440.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908906.1;locus_tag=A8144_10775;product=hydrolase;protein_id=OAR20440.1;transl_table=11
LYPH01000045.1	Genbank	gene	38115	39134	.	+	.	ID=gene-A8144_10780;Name=A8144_10780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10780
LYPH01000045.1	Protein Homology	CDS	38115	39134	.	+	0	ID=cds-OAR20441.1;Parent=gene-A8144_10780;Dbxref=NCBI_GP:OAR20441.1;Name=OAR20441.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010950188.1;locus_tag=A8144_10780;product=hypothetical protein;protein_id=OAR20441.1;transl_table=11
LYPH01000045.1	Genbank	gene	39191	39871	.	-	.	ID=gene-A8144_10785;Name=A8144_10785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10785
LYPH01000045.1	Protein Homology	CDS	39191	39871	.	-	0	ID=cds-OAR20442.1;Parent=gene-A8144_10785;Dbxref=NCBI_GP:OAR20442.1;Name=OAR20442.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CB45.1;locus_tag=A8144_10785;product=deoxyribose-phosphate aldolase;protein_id=OAR20442.1;transl_table=11
LYPH01000045.1	Genbank	gene	39871	40242	.	-	.	ID=gene-A8144_10790;Name=A8144_10790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10790
LYPH01000045.1	Protein Homology	CDS	39871	40242	.	-	0	ID=cds-OAR20452.1;Parent=gene-A8144_10790;Dbxref=NCBI_GP:OAR20452.1;Name=OAR20452.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CB44.1;locus_tag=A8144_10790;product=hypothetical protein;protein_id=OAR20452.1;transl_table=11
LYPH01000045.1	Genbank	gene	40345	40632	.	-	.	ID=gene-A8144_10795;Name=A8144_10795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10795
LYPH01000045.1	Protein Homology	CDS	40345	40632	.	-	0	ID=cds-OAR20443.1;Parent=gene-A8144_10795;Dbxref=NCBI_GP:OAR20443.1;Name=OAR20443.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908910.1;locus_tag=A8144_10795;product=hypothetical protein;protein_id=OAR20443.1;transl_table=11
LYPH01000045.1	Genbank	gene	40752	41318	.	-	.	ID=gene-A8144_10800;Name=A8144_10800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10800
LYPH01000045.1	Protein Homology	CDS	40752	41318	.	-	0	ID=cds-OAR20453.1;Parent=gene-A8144_10800;Dbxref=NCBI_GP:OAR20453.1;Name=OAR20453.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CB42.1;locus_tag=A8144_10800;product=heparin-binding hemagglutinin;protein_id=OAR20453.1;transl_table=11
LYPH01000045.1	Genbank	pseudogene	41622	41967	.	-	.	ID=gene-A8144_10805;Name=A8144_10805;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10805;pseudo=true
LYPH01000045.1	Protein Homology	CDS	41622	41967	.	-	0	ID=cds-A8144_10805;Parent=gene-A8144_10805;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008261249.1;locus_tag=A8144_10805;product=XRE family transcriptional regulator;pseudo=true;transl_table=11
LYPH01000045.1	Genbank	gene	42154	42396	.	+	.	ID=gene-A8144_10810;Name=A8144_10810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10810
LYPH01000045.1	GeneMarkS+	CDS	42154	42396	.	+	0	ID=cds-OAR20444.1;Parent=gene-A8144_10810;Dbxref=NCBI_GP:OAR20444.1;Name=OAR20444.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10810;product=hypothetical protein;protein_id=OAR20444.1;transl_table=11
LYPH01000045.1	Genbank	gene	42813	43514	.	+	.	ID=gene-A8144_10815;Name=A8144_10815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10815
LYPH01000045.1	Protein Homology	CDS	42813	43514	.	+	0	ID=cds-OAR20445.1;Parent=gene-A8144_10815;Dbxref=NCBI_GP:OAR20445.1;Name=OAR20445.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908912.1;locus_tag=A8144_10815;product=TetR family transcriptional regulator;protein_id=OAR20445.1;transl_table=11
LYPH01000045.1	Genbank	gene	44697	45502	.	+	.	ID=gene-A8144_10820;Name=A8144_10820;end_range=45502,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10820;partial=true
LYPH01000045.1	Protein Homology	CDS	44697	45502	.	+	0	ID=cds-OAR20446.1;Parent=gene-A8144_10820;Dbxref=NCBI_GP:OAR20446.1;Name=OAR20446.1;end_range=45502,.;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908913.1;locus_tag=A8144_10820;partial=true;product=SAM-dependent methyltransferase;protein_id=OAR20446.1;transl_table=11
##sequence-region LYPH01000046.1 1 25970
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000046.1	Genbank	region	1	25970	.	+	.	ID=LYPH01000046.1:1..25970;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000046.1	Genbank	pseudogene	1	500	.	-	.	ID=gene-A8144_10825;Name=A8144_10825;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10825;pseudo=true
LYPH01000046.1	Protein Homology	CDS	1	500	.	-	0	ID=cds-A8144_10825;Parent=gene-A8144_10825;Note=incomplete%3B too short partial abutting assembly gap%3B missing stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908184.1;locus_tag=A8144_10825;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000046.1	Genbank	gene	557	856	.	-	.	ID=gene-A8144_10830;Name=A8144_10830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10830
LYPH01000046.1	Protein Homology	CDS	557	856	.	-	0	ID=cds-OAR20398.1;Parent=gene-A8144_10830;Dbxref=NCBI_GP:OAR20398.1;Name=OAR20398.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908098.1;locus_tag=A8144_10830;product=hypothetical protein;protein_id=OAR20398.1;transl_table=11
LYPH01000046.1	Genbank	pseudogene	1836	2944	.	-	.	ID=gene-A8144_10835;Name=A8144_10835;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10835;pseudo=true
LYPH01000046.1	Protein Homology	CDS	1836	2944	.	-	0	ID=cds-A8144_10835;Parent=gene-A8144_10835;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009975821.1;locus_tag=A8144_10835;product=alcohol dehydrogenase;pseudo=true;transl_table=11
LYPH01000046.1	Genbank	gene	5007	5309	.	-	.	ID=gene-A8144_10840;Name=A8144_10840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10840
LYPH01000046.1	Protein Homology	CDS	5007	5309	.	-	0	ID=cds-OAR20399.1;Parent=gene-A8144_10840;Dbxref=NCBI_GP:OAR20399.1;Name=OAR20399.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908185.1;locus_tag=A8144_10840;product=hypothetical protein;protein_id=OAR20399.1;transl_table=11
LYPH01000046.1	Genbank	gene	5836	6033	.	-	.	ID=gene-A8144_10845;Name=A8144_10845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10845
LYPH01000046.1	GeneMarkS+	CDS	5836	6033	.	-	0	ID=cds-OAR20400.1;Parent=gene-A8144_10845;Dbxref=NCBI_GP:OAR20400.1;Name=OAR20400.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10845;product=hypothetical protein;protein_id=OAR20400.1;transl_table=11
LYPH01000046.1	Genbank	gene	6329	6601	.	-	.	ID=gene-A8144_10850;Name=A8144_10850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10850
LYPH01000046.1	GeneMarkS+	CDS	6329	6601	.	-	0	ID=cds-OAR20401.1;Parent=gene-A8144_10850;Dbxref=NCBI_GP:OAR20401.1;Name=OAR20401.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10850;product=hypothetical protein;protein_id=OAR20401.1;transl_table=11
LYPH01000046.1	Genbank	gene	7912	8154	.	-	.	ID=gene-A8144_10855;Name=A8144_10855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10855
LYPH01000046.1	GeneMarkS+	CDS	7912	8154	.	-	0	ID=cds-OAR20402.1;Parent=gene-A8144_10855;Dbxref=NCBI_GP:OAR20402.1;Name=OAR20402.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10855;product=hypothetical protein;protein_id=OAR20402.1;transl_table=11
LYPH01000046.1	Genbank	gene	8316	8543	.	+	.	ID=gene-A8144_10860;Name=A8144_10860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10860
LYPH01000046.1	GeneMarkS+	CDS	8316	8543	.	+	0	ID=cds-OAR20403.1;Parent=gene-A8144_10860;Dbxref=NCBI_GP:OAR20403.1;Name=OAR20403.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10860;product=hypothetical protein;protein_id=OAR20403.1;transl_table=11
LYPH01000046.1	Genbank	gene	8826	9086	.	-	.	ID=gene-A8144_10865;Name=A8144_10865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10865
LYPH01000046.1	Protein Homology	CDS	8826	9086	.	-	0	ID=cds-OAR20404.1;Parent=gene-A8144_10865;Dbxref=NCBI_GP:OAR20404.1;Name=OAR20404.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908186.1;locus_tag=A8144_10865;product=hypothetical protein;protein_id=OAR20404.1;transl_table=11
LYPH01000046.1	Genbank	gene	9994	10308	.	-	.	ID=gene-A8144_10870;Name=A8144_10870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10870
LYPH01000046.1	GeneMarkS+	CDS	9994	10308	.	-	0	ID=cds-OAR20405.1;Parent=gene-A8144_10870;Dbxref=NCBI_GP:OAR20405.1;Name=OAR20405.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10870;product=hypothetical protein;protein_id=OAR20405.1;transl_table=11
LYPH01000046.1	Genbank	gene	10724	11107	.	-	.	ID=gene-A8144_10875;Name=A8144_10875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10875
LYPH01000046.1	Protein Homology	CDS	10724	11107	.	-	0	ID=cds-OAR20406.1;Parent=gene-A8144_10875;Dbxref=NCBI_GP:OAR20406.1;Name=OAR20406.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908187.1;locus_tag=A8144_10875;product=hypothetical protein;protein_id=OAR20406.1;transl_table=11
LYPH01000046.1	Genbank	gene	11106	11342	.	+	.	ID=gene-A8144_10880;Name=A8144_10880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10880
LYPH01000046.1	GeneMarkS+	CDS	11106	11342	.	+	0	ID=cds-OAR20407.1;Parent=gene-A8144_10880;Dbxref=NCBI_GP:OAR20407.1;Name=OAR20407.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10880;product=hypothetical protein;protein_id=OAR20407.1;transl_table=11
LYPH01000046.1	Genbank	gene	11738	12007	.	-	.	ID=gene-A8144_10885;Name=A8144_10885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10885
LYPH01000046.1	GeneMarkS+	CDS	11738	12007	.	-	0	ID=cds-OAR20408.1;Parent=gene-A8144_10885;Dbxref=NCBI_GP:OAR20408.1;Name=OAR20408.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10885;product=hypothetical protein;protein_id=OAR20408.1;transl_table=11
LYPH01000046.1	Genbank	pseudogene	12035	13354	.	+	.	ID=gene-A8144_10890;Name=A8144_10890;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10890;pseudo=true
LYPH01000046.1	Protein Homology	CDS	12035	13354	.	+	0	ID=cds-A8144_10890;Parent=gene-A8144_10890;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014379644.1;locus_tag=A8144_10890;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000046.1	Genbank	gene	13522	14241	.	+	.	ID=gene-A8144_10895;Name=A8144_10895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10895
LYPH01000046.1	Protein Homology	CDS	13522	14241	.	+	0	ID=cds-OAR20409.1;Parent=gene-A8144_10895;Dbxref=NCBI_GP:OAR20409.1;Name=OAR20409.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003412957.1;locus_tag=A8144_10895;product=hypothetical protein;protein_id=OAR20409.1;transl_table=11
LYPH01000046.1	Genbank	gene	14853	24083	.	+	.	ID=gene-A8144_10900;Name=A8144_10900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10900
LYPH01000046.1	Protein Homology	CDS	14853	24083	.	+	0	ID=cds-OAR20410.1;Parent=gene-A8144_10900;Dbxref=NCBI_GP:OAR20410.1;Name=OAR20410.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908189.1;locus_tag=A8144_10900;product=3-oxoacyl-ACP synthase;protein_id=OAR20410.1;transl_table=11
LYPH01000046.1	Genbank	gene	24112	24504	.	+	.	ID=gene-A8144_10905;Name=A8144_10905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10905
LYPH01000046.1	Protein Homology	CDS	24112	24504	.	+	0	ID=cds-OAR20411.1;Parent=gene-A8144_10905;Dbxref=NCBI_GP:OAR20411.1;Name=OAR20411.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9X7E3.1;locus_tag=A8144_10905;product=holo-ACP synthase;protein_id=OAR20411.1;transl_table=11
LYPH01000046.1	Genbank	gene	24594	25922	.	+	.	ID=gene-A8144_10910;Name=A8144_10910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10910
LYPH01000046.1	Protein Homology	CDS	24594	25922	.	+	0	ID=cds-OAR20412.1;Parent=gene-A8144_10910;Dbxref=NCBI_GP:OAR20412.1;Name=OAR20412.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908191.1;locus_tag=A8144_10910;product=dipeptidase;protein_id=OAR20412.1;transl_table=11
##sequence-region LYPH01000047.1 1 25393
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000047.1	Genbank	region	1	25393	.	+	.	ID=LYPH01000047.1:1..25393;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000047.1	Genbank	gene	84	1760	.	-	.	ID=gene-A8144_10915;Name=A8144_10915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10915
LYPH01000047.1	Protein Homology	CDS	84	1760	.	-	0	ID=cds-OAR20381.1;Parent=gene-A8144_10915;Dbxref=NCBI_GP:OAR20381.1;Name=OAR20381.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015303570.1;locus_tag=A8144_10915;product=ribonuclease J;protein_id=OAR20381.1;transl_table=11
LYPH01000047.1	Genbank	gene	1780	2682	.	-	.	ID=gene-A8144_10920;Name=A8144_10920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10920
LYPH01000047.1	Protein Homology	CDS	1780	2682	.	-	0	ID=cds-OAR20392.1;Parent=gene-A8144_10920;Dbxref=NCBI_GP:OAR20392.1;Name=OAR20392.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014380621.1;locus_tag=A8144_10920;product=4-hydroxy-tetrahydrodipicolinate synthase;protein_id=OAR20392.1;transl_table=11
LYPH01000047.1	Genbank	gene	2798	3562	.	-	.	ID=gene-A8144_10925;Name=thyX;gbkey=Gene;gene=thyX;gene_biotype=protein_coding;locus_tag=A8144_10925
LYPH01000047.1	Protein Homology	CDS	2798	3562	.	-	0	ID=cds-OAR20393.1;Parent=gene-A8144_10925;Dbxref=NCBI_GP:OAR20393.1;Name=OAR20393.1;Note=flavin dependent thymidylate synthase%3B ThyX%3B thymidylate synthase complementing protein%3B catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate%3B the enzyme from Mycobacterium tuberculosis forms homotetramers%3B uses FAD as a cofactor;gbkey=CDS;gene=thyX;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003414053.1;locus_tag=A8144_10925;product=FAD-dependent thymidylate synthase;protein_id=OAR20393.1;transl_table=11
LYPH01000047.1	Genbank	gene	3915	4097	.	-	.	ID=gene-A8144_10930;Name=A8144_10930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10930
LYPH01000047.1	GeneMarkS+	CDS	3915	4097	.	-	0	ID=cds-OAR20382.1;Parent=gene-A8144_10930;Dbxref=NCBI_GP:OAR20382.1;Name=OAR20382.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10930;product=hypothetical protein;protein_id=OAR20382.1;transl_table=11
LYPH01000047.1	Genbank	gene	4223	4579	.	-	.	ID=gene-A8144_10935;Name=A8144_10935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10935
LYPH01000047.1	GeneMarkS+	CDS	4223	4579	.	-	0	ID=cds-OAR20383.1;Parent=gene-A8144_10935;Dbxref=NCBI_GP:OAR20383.1;Name=OAR20383.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10935;product=hypothetical protein;protein_id=OAR20383.1;transl_table=11
LYPH01000047.1	Genbank	gene	5737	5940	.	-	.	ID=gene-A8144_10940;Name=A8144_10940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10940
LYPH01000047.1	GeneMarkS+	CDS	5737	5940	.	-	0	ID=cds-OAR20384.1;Parent=gene-A8144_10940;Dbxref=NCBI_GP:OAR20384.1;Name=OAR20384.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10940;product=hypothetical protein;protein_id=OAR20384.1;transl_table=11
LYPH01000047.1	Genbank	pseudogene	6044	6951	.	-	.	ID=gene-A8144_10945;Name=A8144_10945;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10945;pseudo=true
LYPH01000047.1	Protein Homology	CDS	6044	6951	.	-	0	ID=cds-A8144_10945;Parent=gene-A8144_10945;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007171527.1;locus_tag=A8144_10945;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000047.1	Genbank	pseudogene	7123	8308	.	-	.	ID=gene-A8144_10950;Name=A8144_10950;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10950;pseudo=true
LYPH01000047.1	Protein Homology	CDS	7123	8308	.	-	0	ID=cds-A8144_10950;Parent=gene-A8144_10950;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003414057.1;locus_tag=A8144_10950;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000047.1	Genbank	gene	8546	8827	.	-	.	ID=gene-A8144_10955;Name=A8144_10955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10955
LYPH01000047.1	Protein Homology	CDS	8546	8827	.	-	0	ID=cds-OAR20385.1;Parent=gene-A8144_10955;Dbxref=NCBI_GP:OAR20385.1;Name=OAR20385.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908383.1;locus_tag=A8144_10955;product=hypothetical protein;protein_id=OAR20385.1;transl_table=11
LYPH01000047.1	Genbank	gene	9144	9566	.	-	.	ID=gene-A8144_10960;Name=A8144_10960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10960
LYPH01000047.1	GeneMarkS+	CDS	9144	9566	.	-	0	ID=cds-OAR20386.1;Parent=gene-A8144_10960;Dbxref=NCBI_GP:OAR20386.1;Name=OAR20386.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10960;product=hypothetical protein;protein_id=OAR20386.1;transl_table=11
LYPH01000047.1	Genbank	gene	9629	10126	.	-	.	ID=gene-A8144_10965;Name=A8144_10965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10965
LYPH01000047.1	Protein Homology	CDS	9629	10126	.	-	0	ID=cds-OAR20394.1;Parent=gene-A8144_10965;Dbxref=NCBI_GP:OAR20394.1;Name=OAR20394.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBW1.1;locus_tag=A8144_10965;product=dihydrofolate reductase;protein_id=OAR20394.1;transl_table=11
LYPH01000047.1	Genbank	gene	10179	10979	.	-	.	ID=gene-A8144_10970;Name=A8144_10970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10970
LYPH01000047.1	Protein Homology	CDS	10179	10979	.	-	0	ID=cds-OAR20387.1;Parent=gene-A8144_10970;Dbxref=NCBI_GP:OAR20387.1;Name=OAR20387.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q73VZ2.1;locus_tag=A8144_10970;product=thymidylate synthase;protein_id=OAR20387.1;transl_table=11
LYPH01000047.1	Genbank	gene	11282	11500	.	+	.	ID=gene-A8144_10975;Name=A8144_10975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10975
LYPH01000047.1	GeneMarkS+	CDS	11282	11500	.	+	0	ID=cds-OAR20388.1;Parent=gene-A8144_10975;Dbxref=NCBI_GP:OAR20388.1;Name=OAR20388.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10975;product=hypothetical protein;protein_id=OAR20388.1;transl_table=11
LYPH01000047.1	Genbank	pseudogene	11891	12905	.	-	.	ID=gene-A8144_10980;Name=A8144_10980;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10980;pseudo=true
LYPH01000047.1	Protein Homology	CDS	11891	12905	.	-	0	ID=cds-A8144_10980;Parent=gene-A8144_10980;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020728364.1;locus_tag=A8144_10980;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000047.1	Genbank	pseudogene	12902	14106	.	-	.	ID=gene-A8144_10985;Name=A8144_10985;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_10985;pseudo=true
LYPH01000047.1	Protein Homology	CDS	12902	14106	.	-	0	ID=cds-A8144_10985;Parent=gene-A8144_10985;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014380628.1;locus_tag=A8144_10985;product=acyl-CoA dehydrogenase;pseudo=true;transl_table=11
LYPH01000047.1	Genbank	gene	14973	15263	.	-	.	ID=gene-A8144_10990;Name=A8144_10990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10990
LYPH01000047.1	Protein Homology	CDS	14973	15263	.	-	0	ID=cds-OAR20389.1;Parent=gene-A8144_10990;Dbxref=NCBI_GP:OAR20389.1;Name=OAR20389.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908386.1;locus_tag=A8144_10990;product=hypothetical protein;protein_id=OAR20389.1;transl_table=11
LYPH01000047.1	Genbank	gene	16324	16524	.	-	.	ID=gene-A8144_10995;Name=A8144_10995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_10995
LYPH01000047.1	GeneMarkS+	CDS	16324	16524	.	-	0	ID=cds-OAR20390.1;Parent=gene-A8144_10995;Dbxref=NCBI_GP:OAR20390.1;Name=OAR20390.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_10995;product=hypothetical protein;protein_id=OAR20390.1;transl_table=11
LYPH01000047.1	Genbank	gene	17164	17619	.	-	.	ID=gene-A8144_11000;Name=A8144_11000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11000
LYPH01000047.1	Protein Homology	CDS	17164	17619	.	-	0	ID=cds-OAR20395.1;Parent=gene-A8144_11000;Dbxref=NCBI_GP:OAR20395.1;Name=OAR20395.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908387.1;locus_tag=A8144_11000;product=flavodoxin;protein_id=OAR20395.1;transl_table=11
LYPH01000047.1	Genbank	gene	17627	18094	.	-	.	ID=gene-A8144_11005;Name=A8144_11005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11005
LYPH01000047.1	Protein Homology	CDS	17627	18094	.	-	0	ID=cds-OAR20396.1;Parent=gene-A8144_11005;Dbxref=NCBI_GP:OAR20396.1;Name=OAR20396.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014382935.1;locus_tag=A8144_11005;product=hypothetical protein;protein_id=OAR20396.1;transl_table=11
LYPH01000047.1	Genbank	gene	18106	18843	.	-	.	ID=gene-A8144_11010;Name=A8144_11010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11010
LYPH01000047.1	Protein Homology	CDS	18106	18843	.	-	0	ID=cds-OAR20397.1;Parent=gene-A8144_11010;Dbxref=NCBI_GP:OAR20397.1;Name=OAR20397.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020728356.1;locus_tag=A8144_11010;product=4-hydroxy-tetrahydrodipicolinate reductase;protein_id=OAR20397.1;transl_table=11
LYPH01000047.1	Genbank	pseudogene	19736	20843	.	+	.	ID=gene-A8144_11015;Name=A8144_11015;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11015;pseudo=true
LYPH01000047.1	Protein Homology	CDS	19736	20843	.	+	0	ID=cds-A8144_11015;Parent=gene-A8144_11015;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015291857.1;locus_tag=A8144_11015;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000047.1	Genbank	pseudogene	21077	22014	.	-	.	ID=gene-A8144_11020;Name=A8144_11020;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11020;pseudo=true
LYPH01000047.1	Protein Homology	CDS	21077	22014	.	-	0	ID=cds-A8144_11020;Parent=gene-A8144_11020;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008258653.1;locus_tag=A8144_11020;product=oxidoreductase;pseudo=true;transl_table=11
LYPH01000047.1	Genbank	pseudogene	22566	23454	.	-	.	ID=gene-A8144_11025;Name=A8144_11025;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11025;pseudo=true
LYPH01000047.1	Protein Homology	CDS	22566	23454	.	-	0	ID=cds-A8144_11025;Parent=gene-A8144_11025;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007772991.1;locus_tag=A8144_11025;product=metal-dependent hydrolase;pseudo=true;transl_table=11
LYPH01000047.1	Genbank	pseudogene	23482	23913	.	-	.	ID=gene-A8144_11030;Name=A8144_11030;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11030;pseudo=true
LYPH01000047.1	Protein Homology	CDS	23482	23913	.	-	0	ID=cds-A8144_11030;Parent=gene-A8144_11030;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012393721.1;locus_tag=A8144_11030;product=AsnC family transcriptional regulator;pseudo=true;transl_table=11
LYPH01000047.1	Genbank	gene	24120	25235	.	+	.	ID=gene-A8144_11035;Name=A8144_11035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11035
LYPH01000047.1	Protein Homology	CDS	24120	25235	.	+	0	ID=cds-OAR20391.1;Parent=gene-A8144_11035;Dbxref=NCBI_GP:OAR20391.1;Name=OAR20391.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908389.1;locus_tag=A8144_11035;product=alanine dehydrogenase;protein_id=OAR20391.1;transl_table=11
##sequence-region LYPH01000048.1 1 25364
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000048.1	Genbank	region	1	25364	.	+	.	ID=LYPH01000048.1:1..25364;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000048.1	Genbank	gene	454	660	.	+	.	ID=gene-A8144_11040;Name=A8144_11040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11040
LYPH01000048.1	GeneMarkS+	CDS	454	660	.	+	0	ID=cds-OAR20361.1;Parent=gene-A8144_11040;Dbxref=NCBI_GP:OAR20361.1;Name=OAR20361.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11040;product=hypothetical protein;protein_id=OAR20361.1;transl_table=11
LYPH01000048.1	Genbank	gene	933	1133	.	-	.	ID=gene-A8144_11045;Name=A8144_11045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11045
LYPH01000048.1	GeneMarkS+	CDS	933	1133	.	-	0	ID=cds-OAR20362.1;Parent=gene-A8144_11045;Dbxref=NCBI_GP:OAR20362.1;Name=OAR20362.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11045;product=hypothetical protein;protein_id=OAR20362.1;transl_table=11
LYPH01000048.1	Genbank	gene	1426	1671	.	-	.	ID=gene-A8144_11050;Name=A8144_11050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11050
LYPH01000048.1	GeneMarkS+	CDS	1426	1671	.	-	0	ID=cds-OAR20363.1;Parent=gene-A8144_11050;Dbxref=NCBI_GP:OAR20363.1;Name=OAR20363.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11050;product=hypothetical protein;protein_id=OAR20363.1;transl_table=11
LYPH01000048.1	Genbank	gene	3439	3948	.	+	.	ID=gene-A8144_11055;Name=A8144_11055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11055
LYPH01000048.1	Protein Homology	CDS	3439	3948	.	+	0	ID=cds-OAR20380.1;Parent=gene-A8144_11055;Dbxref=NCBI_GP:OAR20380.1;Name=OAR20380.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907494.1;locus_tag=A8144_11055;product=hypothetical protein;protein_id=OAR20380.1;transl_table=11
LYPH01000048.1	Genbank	gene	3945	5666	.	+	.	ID=gene-A8144_11060;Name=A8144_11060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11060
LYPH01000048.1	Protein Homology	CDS	3945	5666	.	+	0	ID=cds-OAR20364.1;Parent=gene-A8144_11060;Dbxref=NCBI_GP:OAR20364.1;Name=OAR20364.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33089.1;locus_tag=A8144_11060;product=type VII secretion AAA-ATPase EccA;protein_id=OAR20364.1;transl_table=11
LYPH01000048.1	Genbank	gene	5670	7115	.	+	.	ID=gene-A8144_11065;Name=A8144_11065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11065
LYPH01000048.1	Protein Homology	CDS	5670	7115	.	+	0	ID=cds-OAR20365.1;Parent=gene-A8144_11065;Dbxref=NCBI_GP:OAR20365.1;Name=OAR20365.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907492.1;locus_tag=A8144_11065;product=type VII secretion protein EccB;protein_id=OAR20365.1;transl_table=11
LYPH01000048.1	Genbank	gene	7112	9346	.	+	.	ID=gene-A8144_11070;Name=A8144_11070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11070
LYPH01000048.1	Protein Homology	CDS	7112	9346	.	+	0	ID=cds-OAR20366.1;Parent=gene-A8144_11070;Dbxref=NCBI_GP:OAR20366.1;Name=OAR20366.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907491.1;locus_tag=A8144_11070;product=type VII secretion protein EccCa;protein_id=OAR20366.1;transl_table=11
LYPH01000048.1	Genbank	gene	9420	11213	.	+	.	ID=gene-A8144_11075;Name=A8144_11075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11075
LYPH01000048.1	Protein Homology	CDS	9420	11213	.	+	0	ID=cds-OAR20367.1;Parent=gene-A8144_11075;Dbxref=NCBI_GP:OAR20367.1;Name=OAR20367.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907490.1;locus_tag=A8144_11075;product=type VII secretion protein EccCb;protein_id=OAR20367.1;transl_table=11
LYPH01000048.1	Genbank	gene	11423	12331	.	+	.	ID=gene-A8144_11080;Name=A8144_11080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11080
LYPH01000048.1	Protein Homology	CDS	11423	12331	.	+	0	ID=cds-OAR20368.1;Parent=gene-A8144_11080;Dbxref=NCBI_GP:OAR20368.1;Name=OAR20368.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907489.1;locus_tag=A8144_11080;product=hypothetical protein;protein_id=OAR20368.1;transl_table=11
LYPH01000048.1	Genbank	gene	12510	12812	.	+	.	ID=gene-A8144_11085;Name=A8144_11085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11085
LYPH01000048.1	Protein Homology	CDS	12510	12812	.	+	0	ID=cds-OAR20369.1;Parent=gene-A8144_11085;Dbxref=NCBI_GP:OAR20369.1;Name=OAR20369.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33084.3;locus_tag=A8144_11085;product=type VII secretion protein EsxB;protein_id=OAR20369.1;transl_table=11
LYPH01000048.1	Genbank	gene	12839	13126	.	+	.	ID=gene-A8144_11090;Name=A8144_11090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11090
LYPH01000048.1	Protein Homology	CDS	12839	13126	.	+	0	ID=cds-OAR20370.1;Parent=gene-A8144_11090;Dbxref=NCBI_GP:OAR20370.1;Name=OAR20370.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012634408.1;locus_tag=A8144_11090;product=hypothetical protein;protein_id=OAR20370.1;transl_table=11
LYPH01000048.1	Genbank	gene	13217	14977	.	+	.	ID=gene-A8144_11095;Name=A8144_11095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11095
LYPH01000048.1	Protein Homology	CDS	13217	14977	.	+	0	ID=cds-OAR20371.1;Parent=gene-A8144_11095;Dbxref=NCBI_GP:OAR20371.1;Name=OAR20371.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907486.1;locus_tag=A8144_11095;product=secretion protein EspI;protein_id=OAR20371.1;transl_table=11
LYPH01000048.1	Genbank	gene	14974	16512	.	+	.	ID=gene-A8144_11100;Name=A8144_11100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11100
LYPH01000048.1	Protein Homology	CDS	14974	16512	.	+	0	ID=cds-OAR20372.1;Parent=gene-A8144_11100;Dbxref=NCBI_GP:OAR20372.1;Name=OAR20372.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907485.1;locus_tag=A8144_11100;product=type VII secretion integral membrane protein EccD;protein_id=OAR20372.1;transl_table=11
LYPH01000048.1	Genbank	gene	16544	16768	.	+	.	ID=gene-A8144_11105;Name=A8144_11105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11105
LYPH01000048.1	GeneMarkS+	CDS	16544	16768	.	+	0	ID=cds-OAR20373.1;Parent=gene-A8144_11105;Dbxref=NCBI_GP:OAR20373.1;Name=OAR20373.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11105;product=hypothetical protein;protein_id=OAR20373.1;transl_table=11
LYPH01000048.1	Genbank	gene	17827	18045	.	-	.	ID=gene-A8144_11110;Name=A8144_11110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11110
LYPH01000048.1	GeneMarkS+	CDS	17827	18045	.	-	0	ID=cds-OAR20374.1;Parent=gene-A8144_11110;Dbxref=NCBI_GP:OAR20374.1;Name=OAR20374.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11110;product=hypothetical protein;protein_id=OAR20374.1;transl_table=11
LYPH01000048.1	Genbank	gene	19493	19834	.	-	.	ID=gene-A8144_11115;Name=A8144_11115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11115
LYPH01000048.1	Protein Homology	CDS	19493	19834	.	-	0	ID=cds-OAR20375.1;Parent=gene-A8144_11115;Dbxref=NCBI_GP:OAR20375.1;Name=OAR20375.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907484.1;locus_tag=A8144_11115;product=secretion protein EspL;protein_id=OAR20375.1;transl_table=11
LYPH01000048.1	Genbank	gene	20499	20804	.	-	.	ID=gene-A8144_11120;Name=A8144_11120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11120
LYPH01000048.1	GeneMarkS+	CDS	20499	20804	.	-	0	ID=cds-OAR20376.1;Parent=gene-A8144_11120;Dbxref=NCBI_GP:OAR20376.1;Name=OAR20376.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11120;product=hypothetical protein;protein_id=OAR20376.1;transl_table=11
LYPH01000048.1	Genbank	gene	21136	22539	.	-	.	ID=gene-A8144_11125;Name=A8144_11125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11125
LYPH01000048.1	Protein Homology	CDS	21136	22539	.	-	0	ID=cds-OAR20377.1;Parent=gene-A8144_11125;Dbxref=NCBI_GP:OAR20377.1;Name=OAR20377.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012634407.1;locus_tag=A8144_11125;product=type VII secretion protein EccE;protein_id=OAR20377.1;transl_table=11
LYPH01000048.1	Genbank	gene	22536	23876	.	-	.	ID=gene-A8144_11130;Name=A8144_11130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11130
LYPH01000048.1	Protein Homology	CDS	22536	23876	.	-	0	ID=cds-OAR20378.1;Parent=gene-A8144_11130;Dbxref=NCBI_GP:OAR20378.1;Name=OAR20378.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907482.1;locus_tag=A8144_11130;product=type VII secretion-associated serine protease mycosin;protein_id=OAR20378.1;transl_table=11
LYPH01000048.1	Genbank	gene	24655	24984	.	+	.	ID=gene-A8144_11135;Name=A8144_11135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11135
LYPH01000048.1	GeneMarkS+	CDS	24655	24984	.	+	0	ID=cds-OAR20379.1;Parent=gene-A8144_11135;Dbxref=NCBI_GP:OAR20379.1;Name=OAR20379.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11135;product=hypothetical protein;protein_id=OAR20379.1;transl_table=11
##sequence-region LYPH01000049.1 1 23974
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000049.1	Genbank	region	1	23974	.	+	.	ID=LYPH01000049.1:1..23974;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000049.1	Genbank	gene	413	592	.	-	.	ID=gene-A8144_11140;Name=A8144_11140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11140
LYPH01000049.1	GeneMarkS+	CDS	413	592	.	-	0	ID=cds-OAR20344.1;Parent=gene-A8144_11140;Dbxref=NCBI_GP:OAR20344.1;Name=OAR20344.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11140;product=hypothetical protein;protein_id=OAR20344.1;transl_table=11
LYPH01000049.1	Genbank	gene	929	1783	.	-	.	ID=gene-A8144_11145;Name=A8144_11145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11145
LYPH01000049.1	Protein Homology	CDS	929	1783	.	-	0	ID=cds-OAR20345.1;Parent=gene-A8144_11145;Dbxref=NCBI_GP:OAR20345.1;Name=OAR20345.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003876203.1;locus_tag=A8144_11145;product=nicotinate-nucleotide diphosphorylase (carboxylating);protein_id=OAR20345.1;transl_table=11
LYPH01000049.1	Genbank	gene	1786	3369	.	-	.	ID=gene-A8144_11150;Name=A8144_11150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11150
LYPH01000049.1	Protein Homology	CDS	1786	3369	.	-	0	ID=cds-OAR20346.1;Parent=gene-A8144_11150;Dbxref=NCBI_GP:OAR20346.1;Name=OAR20346.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908209.1;locus_tag=A8144_11150;product=L-aspartate oxidase;protein_id=OAR20346.1;transl_table=11
LYPH01000049.1	Genbank	gene	3366	4424	.	-	.	ID=gene-A8144_11155;Name=A8144_11155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11155
LYPH01000049.1	Protein Homology	CDS	3366	4424	.	-	0	ID=cds-OAR20347.1;Parent=gene-A8144_11155;Dbxref=NCBI_GP:OAR20347.1;Name=OAR20347.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014711919.1;locus_tag=A8144_11155;product=quinolinate synthase;protein_id=OAR20347.1;transl_table=11
LYPH01000049.1	Genbank	gene	4471	5190	.	+	.	ID=gene-A8144_11160;Name=A8144_11160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11160
LYPH01000049.1	Protein Homology	CDS	4471	5190	.	+	0	ID=cds-OAR20359.1;Parent=gene-A8144_11160;Dbxref=NCBI_GP:OAR20359.1;Name=OAR20359.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908207.1;locus_tag=A8144_11160;product=NUDIX hydrolase;protein_id=OAR20359.1;transl_table=11
LYPH01000049.1	Genbank	pseudogene	5398	6686	.	+	.	ID=gene-A8144_11165;Name=A8144_11165;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11165;pseudo=true
LYPH01000049.1	Protein Homology	CDS	5398	6686	.	+	0	ID=cds-A8144_11165;Parent=gene-A8144_11165;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020787706.1;locus_tag=A8144_11165;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000049.1	Genbank	gene	6737	7333	.	-	.	ID=gene-A8144_11170;Name=A8144_11170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11170
LYPH01000049.1	Protein Homology	CDS	6737	7333	.	-	0	ID=cds-OAR20348.1;Parent=gene-A8144_11170;Dbxref=NCBI_GP:OAR20348.1;Name=OAR20348.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49626.1;locus_tag=A8144_11170;product=hypothetical protein;protein_id=OAR20348.1;transl_table=11
LYPH01000049.1	Genbank	gene	7330	7572	.	-	.	ID=gene-A8144_11175;Name=A8144_11175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11175
LYPH01000049.1	Protein Homology	CDS	7330	7572	.	-	0	ID=cds-OAR20349.1;Parent=gene-A8144_11175;Dbxref=NCBI_GP:OAR20349.1;Name=OAR20349.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49616.1;locus_tag=A8144_11175;product=hypothetical protein;protein_id=OAR20349.1;transl_table=11
LYPH01000049.1	Genbank	gene	7598	8635	.	-	.	ID=gene-A8144_11180;Name=A8144_11180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11180
LYPH01000049.1	Protein Homology	CDS	7598	8635	.	-	0	ID=cds-OAR20350.1;Parent=gene-A8144_11180;Dbxref=NCBI_GP:OAR20350.1;Name=OAR20350.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908204.1;locus_tag=A8144_11180;product=biotin synthase BioB;protein_id=OAR20350.1;transl_table=11
LYPH01000049.1	Genbank	pseudogene	8862	9389	.	-	.	ID=gene-A8144_11185;Name=A8144_11185;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11185;pseudo=true
LYPH01000049.1	Protein Homology	CDS	8862	9389	.	-	0	ID=cds-A8144_11185;Parent=gene-A8144_11185;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003876188.1;locus_tag=A8144_11185;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000049.1	Genbank	gene	9389	10069	.	-	.	ID=gene-A8144_11190;Name=A8144_11190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11190
LYPH01000049.1	Protein Homology	CDS	9389	10069	.	-	0	ID=cds-OAR20360.1;Parent=gene-A8144_11190;Dbxref=NCBI_GP:OAR20360.1;Name=OAR20360.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P45486.2;locus_tag=A8144_11190;product=dethiobiotin synthase;protein_id=OAR20360.1;transl_table=11
LYPH01000049.1	Genbank	gene	10066	11223	.	-	.	ID=gene-A8144_11195;Name=A8144_11195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11195
LYPH01000049.1	Protein Homology	CDS	10066	11223	.	-	0	ID=cds-OAR20351.1;Parent=gene-A8144_11195;Dbxref=NCBI_GP:OAR20351.1;Name=OAR20351.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P45487.1;locus_tag=A8144_11195;product=8-amino-7-oxononanoate synthase;protein_id=OAR20351.1;transl_table=11
LYPH01000049.1	Genbank	gene	11230	12540	.	-	.	ID=gene-A8144_11200;Name=A8144_11200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11200
LYPH01000049.1	Protein Homology	CDS	11230	12540	.	-	0	ID=cds-OAR20352.1;Parent=gene-A8144_11200;Dbxref=NCBI_GP:OAR20352.1;Name=OAR20352.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P45488.1;locus_tag=A8144_11200;product=adenosylmethionine--8-amino-7-oxononanoate transaminase;protein_id=OAR20352.1;transl_table=11
LYPH01000049.1	Genbank	gene	13489	14127	.	+	.	ID=gene-A8144_11205;Name=A8144_11205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11205
LYPH01000049.1	Protein Homology	CDS	13489	14127	.	+	0	ID=cds-OAR20353.1;Parent=gene-A8144_11205;Dbxref=NCBI_GP:OAR20353.1;Name=OAR20353.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908200.1;locus_tag=A8144_11205;product=hypothetical protein;protein_id=OAR20353.1;transl_table=11
LYPH01000049.1	Genbank	gene	14284	16458	.	+	.	ID=gene-A8144_11210;Name=A8144_11210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11210
LYPH01000049.1	Protein Homology	CDS	14284	16458	.	+	0	ID=cds-OAR20354.1;Parent=gene-A8144_11210;Dbxref=NCBI_GP:OAR20354.1;Name=OAR20354.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012394129.1;locus_tag=A8144_11210;product=acetyltransferase;protein_id=OAR20354.1;transl_table=11
LYPH01000049.1	Genbank	pseudogene	16502	18696	.	+	.	ID=gene-A8144_11215;Name=A8144_11215;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11215;pseudo=true
LYPH01000049.1	Protein Homology	CDS	16502	18696	.	+	0	ID=cds-A8144_11215;Parent=gene-A8144_11215;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014942378.1;locus_tag=A8144_11215;product=glycogen debranching enzyme;pseudo=true;transl_table=11
LYPH01000049.1	Genbank	gene	18730	19023	.	+	.	ID=gene-A8144_11220;Name=A8144_11220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11220
LYPH01000049.1	GeneMarkS+	CDS	18730	19023	.	+	0	ID=cds-OAR20355.1;Parent=gene-A8144_11220;Dbxref=NCBI_GP:OAR20355.1;Name=OAR20355.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11220;product=hypothetical protein;protein_id=OAR20355.1;transl_table=11
LYPH01000049.1	Genbank	gene	19417	19653	.	+	.	ID=gene-A8144_11225;Name=A8144_11225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11225
LYPH01000049.1	GeneMarkS+	CDS	19417	19653	.	+	0	ID=cds-OAR20356.1;Parent=gene-A8144_11225;Dbxref=NCBI_GP:OAR20356.1;Name=OAR20356.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11225;product=hypothetical protein;protein_id=OAR20356.1;transl_table=11
LYPH01000049.1	Genbank	gene	19858	20043	.	-	.	ID=gene-A8144_11230;Name=A8144_11230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11230
LYPH01000049.1	Protein Homology	CDS	19858	20043	.	-	0	ID=cds-OAR20357.1;Parent=gene-A8144_11230;Dbxref=NCBI_GP:OAR20357.1;Name=OAR20357.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908198.1;locus_tag=A8144_11230;product=hypothetical protein;protein_id=OAR20357.1;transl_table=11
LYPH01000049.1	Genbank	gene	21603	22886	.	-	.	ID=gene-A8144_11235;Name=A8144_11235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11235
LYPH01000049.1	Protein Homology	CDS	21603	22886	.	-	0	ID=cds-OAR20358.1;Parent=gene-A8144_11235;Dbxref=NCBI_GP:OAR20358.1;Name=OAR20358.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908197.1;locus_tag=A8144_11235;product=threonine dehydratase;protein_id=OAR20358.1;transl_table=11
LYPH01000049.1	Genbank	pseudogene	22952	23346	.	-	.	ID=gene-A8144_11240;Name=A8144_11240;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11240;pseudo=true
LYPH01000049.1	Protein Homology	CDS	22952	23346	.	-	0	ID=cds-A8144_11240;Parent=gene-A8144_11240;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_013829102.1;locus_tag=A8144_11240;product=nitroreductase;pseudo=true;transl_table=11
##sequence-region LYPH01000050.1 1 23914
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000050.1	Genbank	region	1	23914	.	+	.	ID=LYPH01000050.1:1..23914;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000050.1	Genbank	pseudogene	94	707	.	-	.	ID=gene-A8144_11245;Name=A8144_11245;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11245;pseudo=true
LYPH01000050.1	Protein Homology	CDS	94	707	.	-	0	ID=cds-A8144_11245;Parent=gene-A8144_11245;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003900077.1;locus_tag=A8144_11245;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000050.1	Genbank	gene	760	2256	.	-	.	ID=gene-A8144_11250;Name=A8144_11250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11250
LYPH01000050.1	Protein Homology	CDS	760	2256	.	-	0	ID=cds-OAR20323.1;Parent=gene-A8144_11250;Dbxref=NCBI_GP:OAR20323.1;Name=OAR20323.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q50167.1;locus_tag=A8144_11250;product=trehalose-6-phosphate synthase;protein_id=OAR20323.1;transl_table=11
LYPH01000050.1	Genbank	gene	2985	3200	.	+	.	ID=gene-A8144_11255;Name=A8144_11255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11255
LYPH01000050.1	Protein Homology	CDS	2985	3200	.	+	0	ID=cds-OAR20324.1;Parent=gene-A8144_11255;Dbxref=NCBI_GP:OAR20324.1;Name=OAR20324.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908786.1;locus_tag=A8144_11255;product=hypothetical protein;protein_id=OAR20324.1;transl_table=11
LYPH01000050.1	Genbank	gene	3516	3752	.	+	.	ID=gene-A8144_11260;Name=A8144_11260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11260
LYPH01000050.1	Protein Homology	CDS	3516	3752	.	+	0	ID=cds-OAR20325.1;Parent=gene-A8144_11260;Dbxref=NCBI_GP:OAR20325.1;Name=OAR20325.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908785.1;locus_tag=A8144_11260;product=hypothetical protein;protein_id=OAR20325.1;transl_table=11
LYPH01000050.1	Genbank	pseudogene	4119	4957	.	+	.	ID=gene-A8144_11265;Name=A8144_11265;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11265;pseudo=true
LYPH01000050.1	Protein Homology	CDS	4119	4957	.	+	0	ID=cds-A8144_11265;Parent=gene-A8144_11265;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014817720.1;locus_tag=A8144_11265;product=enoyl-CoA hydratase;pseudo=true;transl_table=11
LYPH01000050.1	Genbank	gene	5856	6137	.	-	.	ID=gene-A8144_11270;Name=A8144_11270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11270
LYPH01000050.1	GeneMarkS+	CDS	5856	6137	.	-	0	ID=cds-OAR20326.1;Parent=gene-A8144_11270;Dbxref=NCBI_GP:OAR20326.1;Name=OAR20326.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11270;product=hypothetical protein;protein_id=OAR20326.1;transl_table=11
LYPH01000050.1	Genbank	gene	6140	6379	.	+	.	ID=gene-A8144_11275;Name=A8144_11275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11275
LYPH01000050.1	GeneMarkS+	CDS	6140	6379	.	+	0	ID=cds-OAR20327.1;Parent=gene-A8144_11275;Dbxref=NCBI_GP:OAR20327.1;Name=OAR20327.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11275;product=hypothetical protein;protein_id=OAR20327.1;transl_table=11
LYPH01000050.1	Genbank	gene	6482	6799	.	+	.	ID=gene-A8144_11280;Name=A8144_11280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11280
LYPH01000050.1	Protein Homology	CDS	6482	6799	.	+	0	ID=cds-OAR20341.1;Parent=gene-A8144_11280;Dbxref=NCBI_GP:OAR20341.1;Name=OAR20341.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908784.1;locus_tag=A8144_11280;product=hypothetical protein;protein_id=OAR20341.1;transl_table=11
LYPH01000050.1	Genbank	pseudogene	6810	7527	.	+	.	ID=gene-A8144_11285;Name=A8144_11285;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11285;pseudo=true
LYPH01000050.1	Protein Homology	CDS	6810	7527	.	+	0	ID=cds-A8144_11285;Parent=gene-A8144_11285;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007166422.1;locus_tag=A8144_11285;product=short-chain dehydrogenase;pseudo=true;transl_table=11
LYPH01000050.1	Genbank	gene	7647	9197	.	-	.	ID=gene-A8144_11290;Name=A8144_11290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11290
LYPH01000050.1	Protein Homology	CDS	7647	9197	.	-	0	ID=cds-OAR20328.1;Parent=gene-A8144_11290;Dbxref=NCBI_GP:OAR20328.1;Name=OAR20328.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908783.1;locus_tag=A8144_11290;product=transcriptional regulator%2C LytR family protein;protein_id=OAR20328.1;transl_table=11
LYPH01000050.1	Genbank	gene	9390	9710	.	-	.	ID=gene-A8144_11295;Name=A8144_11295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11295
LYPH01000050.1	GeneMarkS+	CDS	9390	9710	.	-	0	ID=cds-OAR20329.1;Parent=gene-A8144_11295;Dbxref=NCBI_GP:OAR20329.1;Name=OAR20329.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11295;product=hypothetical protein;protein_id=OAR20329.1;transl_table=11
LYPH01000050.1	Genbank	gene	11286	11489	.	+	.	ID=gene-A8144_11300;Name=A8144_11300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11300
LYPH01000050.1	GeneMarkS+	CDS	11286	11489	.	+	0	ID=cds-OAR20330.1;Parent=gene-A8144_11300;Dbxref=NCBI_GP:OAR20330.1;Name=OAR20330.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11300;product=hypothetical protein;protein_id=OAR20330.1;transl_table=11
LYPH01000050.1	Genbank	gene	11955	12296	.	+	.	ID=gene-A8144_11305;Name=A8144_11305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11305
LYPH01000050.1	Protein Homology	CDS	11955	12296	.	+	0	ID=cds-OAR20331.1;Parent=gene-A8144_11305;Dbxref=NCBI_GP:OAR20331.1;Name=OAR20331.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908782.1;locus_tag=A8144_11305;product=hypothetical protein;protein_id=OAR20331.1;transl_table=11
LYPH01000050.1	Genbank	gene	12525	12815	.	+	.	ID=gene-A8144_11310;Name=A8144_11310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11310
LYPH01000050.1	GeneMarkS+	CDS	12525	12815	.	+	0	ID=cds-OAR20332.1;Parent=gene-A8144_11310;Dbxref=NCBI_GP:OAR20332.1;Name=OAR20332.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11310;product=hypothetical protein;protein_id=OAR20332.1;transl_table=11
LYPH01000050.1	Genbank	gene	13834	14031	.	+	.	ID=gene-A8144_11315;Name=A8144_11315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11315
LYPH01000050.1	GeneMarkS+	CDS	13834	14031	.	+	0	ID=cds-OAR20333.1;Parent=gene-A8144_11315;Dbxref=NCBI_GP:OAR20333.1;Name=OAR20333.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11315;product=hypothetical protein;protein_id=OAR20333.1;transl_table=11
LYPH01000050.1	Genbank	gene	14324	14596	.	+	.	ID=gene-A8144_11320;Name=A8144_11320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11320
LYPH01000050.1	GeneMarkS+	CDS	14324	14596	.	+	0	ID=cds-OAR20334.1;Parent=gene-A8144_11320;Dbxref=NCBI_GP:OAR20334.1;Name=OAR20334.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11320;product=hypothetical protein;protein_id=OAR20334.1;transl_table=11
LYPH01000050.1	Genbank	gene	15487	15681	.	-	.	ID=gene-A8144_11325;Name=A8144_11325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11325
LYPH01000050.1	GeneMarkS+	CDS	15487	15681	.	-	0	ID=cds-OAR20335.1;Parent=gene-A8144_11325;Dbxref=NCBI_GP:OAR20335.1;Name=OAR20335.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11325;product=hypothetical protein;protein_id=OAR20335.1;transl_table=11
LYPH01000050.1	Genbank	gene	15860	16126	.	+	.	ID=gene-A8144_11330;Name=A8144_11330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11330
LYPH01000050.1	GeneMarkS+	CDS	15860	16126	.	+	0	ID=cds-OAR20336.1;Parent=gene-A8144_11330;Dbxref=NCBI_GP:OAR20336.1;Name=OAR20336.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11330;product=hypothetical protein;protein_id=OAR20336.1;transl_table=11
LYPH01000050.1	Genbank	gene	16710	16913	.	+	.	ID=gene-A8144_11335;Name=A8144_11335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11335
LYPH01000050.1	GeneMarkS+	CDS	16710	16913	.	+	0	ID=cds-OAR20337.1;Parent=gene-A8144_11335;Dbxref=NCBI_GP:OAR20337.1;Name=OAR20337.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11335;product=hypothetical protein;protein_id=OAR20337.1;transl_table=11
LYPH01000050.1	Genbank	gene	17744	18475	.	+	.	ID=gene-A8144_11340;Name=A8144_11340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11340
LYPH01000050.1	Protein Homology	CDS	17744	18475	.	+	0	ID=cds-OAR20342.1;Parent=gene-A8144_11340;Dbxref=NCBI_GP:OAR20342.1;Name=OAR20342.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908781.1;locus_tag=A8144_11340;product=trypsin;protein_id=OAR20342.1;transl_table=11
LYPH01000050.1	Genbank	gene	18585	18851	.	+	.	ID=gene-A8144_11345;Name=A8144_11345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11345
LYPH01000050.1	GeneMarkS+	CDS	18585	18851	.	+	0	ID=cds-OAR20338.1;Parent=gene-A8144_11345;Dbxref=NCBI_GP:OAR20338.1;Name=OAR20338.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11345;product=hypothetical protein;protein_id=OAR20338.1;transl_table=11
LYPH01000050.1	Genbank	gene	19753	19827	.	-	.	ID=gene-A8144_11350;Name=A8144_11350;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_11350
LYPH01000050.1	tRNAscan-SE	tRNA	19753	19827	.	-	.	ID=rna-A8144_11350;Parent=gene-A8144_11350;anticodon=(pos:complement(19793..19795));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_11350;product=tRNA-Thr
LYPH01000050.1	tRNAscan-SE	exon	19753	19827	.	-	.	ID=exon-A8144_11350-1;Parent=rna-A8144_11350;anticodon=(pos:complement(19793..19795));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_11350;product=tRNA-Thr
LYPH01000050.1	Genbank	pseudogene	20550	21190	.	+	.	ID=gene-A8144_11355;Name=A8144_11355;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11355;pseudo=true
LYPH01000050.1	Protein Homology	CDS	20550	21190	.	+	0	ID=cds-A8144_11355;Parent=gene-A8144_11355;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019284000.1;locus_tag=A8144_11355;product=DNA-binding response regulator;pseudo=true;transl_table=11
LYPH01000050.1	Genbank	pseudogene	21254	22659	.	+	.	ID=gene-A8144_11360;Name=A8144_11360;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11360;pseudo=true
LYPH01000050.1	Protein Homology	CDS	21254	22659	.	+	0	ID=cds-A8144_11360;Parent=gene-A8144_11360;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003877178.1;locus_tag=A8144_11360;product=two-component sensor histidine kinase;pseudo=true;transl_table=11
LYPH01000050.1	Genbank	gene	22668	23072	.	-	.	ID=gene-A8144_11365;Name=A8144_11365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11365
LYPH01000050.1	Protein Homology	CDS	22668	23072	.	-	0	ID=cds-OAR20343.1;Parent=gene-A8144_11365;Dbxref=NCBI_GP:OAR20343.1;Name=OAR20343.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003875754.1;locus_tag=A8144_11365;product=HIT family hydrolase;protein_id=OAR20343.1;transl_table=11
LYPH01000050.1	Genbank	gene	23247	23459	.	-	.	ID=gene-A8144_11370;Name=A8144_11370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11370
LYPH01000050.1	GeneMarkS+	CDS	23247	23459	.	-	0	ID=cds-OAR20339.1;Parent=gene-A8144_11370;Dbxref=NCBI_GP:OAR20339.1;Name=OAR20339.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11370;product=hypothetical protein;protein_id=OAR20339.1;transl_table=11
LYPH01000050.1	Genbank	gene	23514	23798	.	-	.	ID=gene-A8144_11375;Name=A8144_11375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11375
LYPH01000050.1	GeneMarkS+	CDS	23514	23798	.	-	0	ID=cds-OAR20340.1;Parent=gene-A8144_11375;Dbxref=NCBI_GP:OAR20340.1;Name=OAR20340.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11375;product=hypothetical protein;protein_id=OAR20340.1;transl_table=11
##sequence-region LYPH01000051.1 1 23068
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000051.1	Genbank	region	1	23068	.	+	.	ID=LYPH01000051.1:1..23068;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000051.1	Genbank	pseudogene	1	634	.	+	.	ID=gene-A8144_11380;Name=A8144_11380;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11380;pseudo=true
LYPH01000051.1	GeneMarkS+	CDS	1	634	.	+	1	ID=cds-A8144_11380;Parent=gene-A8144_11380;Note=incomplete%3B too short partial abutting assembly gap%3B missing start;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11380;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000051.1	Genbank	gene	2161	2352	.	-	.	ID=gene-A8144_11385;Name=A8144_11385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11385
LYPH01000051.1	GeneMarkS+	CDS	2161	2352	.	-	0	ID=cds-OAR20306.1;Parent=gene-A8144_11385;Dbxref=NCBI_GP:OAR20306.1;Name=OAR20306.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11385;product=hypothetical protein;protein_id=OAR20306.1;transl_table=11
LYPH01000051.1	Genbank	gene	2698	2898	.	-	.	ID=gene-A8144_11390;Name=A8144_11390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11390
LYPH01000051.1	GeneMarkS+	CDS	2698	2898	.	-	0	ID=cds-OAR20307.1;Parent=gene-A8144_11390;Dbxref=NCBI_GP:OAR20307.1;Name=OAR20307.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11390;product=hypothetical protein;protein_id=OAR20307.1;transl_table=11
LYPH01000051.1	Genbank	gene	2982	3488	.	-	.	ID=gene-A8144_11395;Name=A8144_11395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11395
LYPH01000051.1	Protein Homology	CDS	2982	3488	.	-	0	ID=cds-OAR20308.1;Parent=gene-A8144_11395;Dbxref=NCBI_GP:OAR20308.1;Name=OAR20308.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908988.1;locus_tag=A8144_11395;product=hypothetical protein;protein_id=OAR20308.1;transl_table=11
LYPH01000051.1	Genbank	gene	3485	4234	.	-	.	ID=gene-A8144_11400;Name=A8144_11400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11400
LYPH01000051.1	Protein Homology	CDS	3485	4234	.	-	0	ID=cds-OAR20309.1;Parent=gene-A8144_11400;Dbxref=NCBI_GP:OAR20309.1;Name=OAR20309.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908987.1;locus_tag=A8144_11400;product=hypothetical protein;protein_id=OAR20309.1;transl_table=11
LYPH01000051.1	Genbank	gene	4295	5134	.	-	.	ID=gene-A8144_11405;Name=A8144_11405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11405
LYPH01000051.1	Protein Homology	CDS	4295	5134	.	-	0	ID=cds-OAR20310.1;Parent=gene-A8144_11405;Dbxref=NCBI_GP:OAR20310.1;Name=OAR20310.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908986.1;locus_tag=A8144_11405;product=hydrolase;protein_id=OAR20310.1;transl_table=11
LYPH01000051.1	Genbank	gene	5379	5576	.	-	.	ID=gene-A8144_11410;Name=A8144_11410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11410
LYPH01000051.1	GeneMarkS+	CDS	5379	5576	.	-	0	ID=cds-OAR20311.1;Parent=gene-A8144_11410;Dbxref=NCBI_GP:OAR20311.1;Name=OAR20311.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11410;product=hypothetical protein;protein_id=OAR20311.1;transl_table=11
LYPH01000051.1	Genbank	gene	6623	8020	.	+	.	ID=gene-A8144_11415;Name=A8144_11415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11415
LYPH01000051.1	Protein Homology	CDS	6623	8020	.	+	0	ID=cds-OAR20312.1;Parent=gene-A8144_11415;Dbxref=NCBI_GP:OAR20312.1;Name=OAR20312.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908985.1;locus_tag=A8144_11415;product=hypothetical protein;protein_id=OAR20312.1;transl_table=11
LYPH01000051.1	Genbank	pseudogene	9155	9679	.	-	.	ID=gene-A8144_11420;Name=A8144_11420;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11420;pseudo=true
LYPH01000051.1	Protein Homology	CDS	9155	9679	.	-	0	ID=cds-A8144_11420;Parent=gene-A8144_11420;Note=incomplete%3B partial in the middle of a contig%3B missing start;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008261950.1;locus_tag=A8144_11420;product=mammalian cell entry protein;pseudo=true;transl_table=11
LYPH01000051.1	Genbank	gene	9799	10353	.	-	.	ID=gene-A8144_11425;Name=A8144_11425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11425
LYPH01000051.1	Protein Homology	CDS	9799	10353	.	-	0	ID=cds-OAR20313.1;Parent=gene-A8144_11425;Dbxref=NCBI_GP:OAR20313.1;Name=OAR20313.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009955421.1;locus_tag=A8144_11425;product=mammalian cell entry protein;protein_id=OAR20313.1;transl_table=11
LYPH01000051.1	Genbank	gene	10350	11327	.	-	.	ID=gene-A8144_11430;Name=A8144_11430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11430
LYPH01000051.1	Protein Homology	CDS	10350	11327	.	-	0	ID=cds-OAR20314.1;Parent=gene-A8144_11430;Dbxref=NCBI_GP:OAR20314.1;Name=OAR20314.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908982.1;locus_tag=A8144_11430;product=hypothetical protein;protein_id=OAR20314.1;transl_table=11
LYPH01000051.1	Genbank	pseudogene	11324	12036	.	-	.	ID=gene-A8144_11435;Name=A8144_11435;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11435;pseudo=true
LYPH01000051.1	Protein Homology	CDS	11324	12036	.	-	0	ID=cds-A8144_11435;Parent=gene-A8144_11435;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003874125.1;locus_tag=A8144_11435;product=Mce protein;pseudo=true;transl_table=11
LYPH01000051.1	Genbank	gene	12006	13556	.	-	.	ID=gene-A8144_11440;Name=A8144_11440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11440
LYPH01000051.1	Protein Homology	CDS	12006	13556	.	-	0	ID=cds-OAR20315.1;Parent=gene-A8144_11440;Dbxref=NCBI_GP:OAR20315.1;Name=OAR20315.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019695602.1;locus_tag=A8144_11440;product=mammalian cell entry protein;protein_id=OAR20315.1;transl_table=11
LYPH01000051.1	Genbank	gene	13550	14716	.	-	.	ID=gene-A8144_11445;Name=A8144_11445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11445
LYPH01000051.1	Protein Homology	CDS	13550	14716	.	-	0	ID=cds-OAR20316.1;Parent=gene-A8144_11445;Dbxref=NCBI_GP:OAR20316.1;Name=OAR20316.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003879093.1;locus_tag=A8144_11445;product=mammalian cell entry protein;protein_id=OAR20316.1;transl_table=11
LYPH01000051.1	Genbank	gene	14725	16320	.	-	.	ID=gene-A8144_11450;Name=A8144_11450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11450
LYPH01000051.1	Protein Homology	CDS	14725	16320	.	-	0	ID=cds-OAR20317.1;Parent=gene-A8144_11450;Dbxref=NCBI_GP:OAR20317.1;Name=OAR20317.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015632564.1;locus_tag=A8144_11450;product=mammalian cell entry protein;protein_id=OAR20317.1;transl_table=11
LYPH01000051.1	Genbank	gene	16317	17876	.	-	.	ID=gene-A8144_11455;Name=A8144_11455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11455
LYPH01000051.1	Protein Homology	CDS	16317	17876	.	-	0	ID=cds-OAR20318.1;Parent=gene-A8144_11455;Dbxref=NCBI_GP:OAR20318.1;Name=OAR20318.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007167259.1;locus_tag=A8144_11455;product=mammalian cell entry protein;protein_id=OAR20318.1;transl_table=11
LYPH01000051.1	Genbank	gene	17873	18913	.	-	.	ID=gene-A8144_11460;Name=A8144_11460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11460
LYPH01000051.1	Protein Homology	CDS	17873	18913	.	-	0	ID=cds-OAR20319.1;Parent=gene-A8144_11460;Dbxref=NCBI_GP:OAR20319.1;Name=OAR20319.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908976.1;locus_tag=A8144_11460;product=mammalian cell entry protein;protein_id=OAR20319.1;transl_table=11
LYPH01000051.1	Genbank	gene	18910	20235	.	-	.	ID=gene-A8144_11465;Name=A8144_11465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11465
LYPH01000051.1	Protein Homology	CDS	18910	20235	.	-	0	ID=cds-OAR20320.1;Parent=gene-A8144_11465;Dbxref=NCBI_GP:OAR20320.1;Name=OAR20320.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908975.1;locus_tag=A8144_11465;product=MCE-family protein MCE1A;protein_id=OAR20320.1;transl_table=11
LYPH01000051.1	Genbank	gene	20239	21108	.	-	.	ID=gene-A8144_11470;Name=A8144_11470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11470
LYPH01000051.1	Protein Homology	CDS	20239	21108	.	-	0	ID=cds-OAR20321.1;Parent=gene-A8144_11470;Dbxref=NCBI_GP:OAR20321.1;Name=OAR20321.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908974.1;locus_tag=A8144_11470;product=ABC transporter permease;protein_id=OAR20321.1;transl_table=11
LYPH01000051.1	Genbank	gene	21112	21915	.	-	.	ID=gene-A8144_11475;Name=A8144_11475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11475
LYPH01000051.1	Protein Homology	CDS	21112	21915	.	-	0	ID=cds-OAR20322.1;Parent=gene-A8144_11475;Dbxref=NCBI_GP:OAR20322.1;Name=OAR20322.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908973.1;locus_tag=A8144_11475;product=ABC transporter permease;protein_id=OAR20322.1;transl_table=11
##sequence-region LYPH01000052.1 1 21899
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000052.1	Genbank	region	1	21899	.	+	.	ID=LYPH01000052.1:1..21899;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000052.1	Genbank	gene	120	605	.	-	.	ID=gene-A8144_11480;Name=A8144_11480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11480
LYPH01000052.1	Protein Homology	CDS	120	605	.	-	0	ID=cds-OAR20296.1;Parent=gene-A8144_11480;Dbxref=NCBI_GP:OAR20296.1;Name=OAR20296.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907719.1;locus_tag=A8144_11480;product=peroxiredoxin;protein_id=OAR20296.1;transl_table=11
LYPH01000052.1	Genbank	gene	733	960	.	+	.	ID=gene-A8144_11485;Name=A8144_11485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11485
LYPH01000052.1	Protein Homology	CDS	733	960	.	+	0	ID=cds-OAR20304.1;Parent=gene-A8144_11485;Dbxref=NCBI_GP:OAR20304.1;Name=OAR20304.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007774063.1;locus_tag=A8144_11485;product=hypothetical protein;protein_id=OAR20304.1;transl_table=11
LYPH01000052.1	Genbank	gene	992	1067	.	-	.	ID=gene-A8144_11490;Name=A8144_11490;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_11490
LYPH01000052.1	tRNAscan-SE	tRNA	992	1067	.	-	.	ID=rna-A8144_11490;Parent=gene-A8144_11490;anticodon=(pos:complement(1032..1034));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_11490;product=tRNA-Lys
LYPH01000052.1	tRNAscan-SE	exon	992	1067	.	-	.	ID=exon-A8144_11490-1;Parent=rna-A8144_11490;anticodon=(pos:complement(1032..1034));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_11490;product=tRNA-Lys
LYPH01000052.1	Genbank	gene	1246	2460	.	+	.	ID=gene-A8144_11495;Name=A8144_11495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11495
LYPH01000052.1	Protein Homology	CDS	1246	2460	.	+	0	ID=cds-OAR20305.1;Parent=gene-A8144_11495;Dbxref=NCBI_GP:OAR20305.1;Name=OAR20305.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907721.1;locus_tag=A8144_11495;product=hypothetical protein;protein_id=OAR20305.1;transl_table=11
LYPH01000052.1	Genbank	gene	2485	2560	.	-	.	ID=gene-A8144_11500;Name=A8144_11500;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_11500
LYPH01000052.1	tRNAscan-SE	tRNA	2485	2560	.	-	.	ID=rna-A8144_11500;Parent=gene-A8144_11500;anticodon=(pos:complement(2525..2527));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_11500;product=tRNA-His
LYPH01000052.1	tRNAscan-SE	exon	2485	2560	.	-	.	ID=exon-A8144_11500-1;Parent=rna-A8144_11500;anticodon=(pos:complement(2525..2527));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_11500;product=tRNA-His
LYPH01000052.1	Genbank	gene	2611	3258	.	-	.	ID=gene-A8144_11505;Name=A8144_11505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11505
LYPH01000052.1	Protein Homology	CDS	2611	3258	.	-	0	ID=cds-OAR20297.1;Parent=gene-A8144_11505;Dbxref=NCBI_GP:OAR20297.1;Name=OAR20297.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O07708.1;locus_tag=A8144_11505;product=oligoribonuclease;protein_id=OAR20297.1;transl_table=11
LYPH01000052.1	Genbank	pseudogene	3384	4962	.	+	.	ID=gene-A8144_11510;Name=A8144_11510;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11510;pseudo=true
LYPH01000052.1	Protein Homology	CDS	3384	4962	.	+	0	ID=cds-A8144_11510;Parent=gene-A8144_11510;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008255099.1;locus_tag=A8144_11510;product=ATPase;pseudo=true;transl_table=11
LYPH01000052.1	Genbank	gene	4938	5744	.	-	.	ID=gene-A8144_11515;Name=A8144_11515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11515
LYPH01000052.1	Protein Homology	CDS	4938	5744	.	-	0	ID=cds-OAR20298.1;Parent=gene-A8144_11515;Dbxref=NCBI_GP:OAR20298.1;Name=OAR20298.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907723.1;locus_tag=A8144_11515;product=short-chain dehydrogenase;protein_id=OAR20298.1;transl_table=11
LYPH01000052.1	Genbank	gene	5837	7201	.	+	.	ID=gene-A8144_11520;Name=A8144_11520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11520
LYPH01000052.1	Protein Homology	CDS	5837	7201	.	+	0	ID=cds-OAR20299.1;Parent=gene-A8144_11520;Dbxref=NCBI_GP:OAR20299.1;Name=OAR20299.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907724.1;locus_tag=A8144_11520;product=hypothetical protein;protein_id=OAR20299.1;transl_table=11
LYPH01000052.1	Genbank	gene	7233	8012	.	-	.	ID=gene-A8144_11525;Name=A8144_11525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11525
LYPH01000052.1	Protein Homology	CDS	7233	8012	.	-	0	ID=cds-OAR20300.1;Parent=gene-A8144_11525;Dbxref=NCBI_GP:OAR20300.1;Name=OAR20300.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907725.1;locus_tag=A8144_11525;product=hypothetical protein;protein_id=OAR20300.1;transl_table=11
LYPH01000052.1	Genbank	pseudogene	8959	10238	.	+	.	ID=gene-A8144_11530;Name=A8144_11530;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11530;pseudo=true
LYPH01000052.1	Protein Homology	CDS	8959	10238	.	+	0	ID=cds-A8144_11530;Parent=gene-A8144_11530;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020476665.1;locus_tag=A8144_11530;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000052.1	Genbank	pseudogene	10350	11030	.	+	.	ID=gene-A8144_11535;Name=A8144_11535;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11535;pseudo=true
LYPH01000052.1	Protein Homology	CDS	10350	11030	.	+	0	ID=cds-A8144_11535;Parent=gene-A8144_11535;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015293740.1;locus_tag=A8144_11535;product=succinyl-CoA--3-ketoacid-CoA transferase;pseudo=true;transl_table=11
LYPH01000052.1	Genbank	pseudogene	11080	11734	.	+	.	ID=gene-A8144_11540;Name=A8144_11540;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11540;pseudo=true
LYPH01000052.1	Protein Homology	CDS	11080	11734	.	+	0	ID=cds-A8144_11540;Parent=gene-A8144_11540;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020786678.1;locus_tag=A8144_11540;product=succinyl-CoA--3-ketoacid-CoA transferase;pseudo=true;transl_table=11
LYPH01000052.1	Genbank	pseudogene	11731	13320	.	+	.	ID=gene-A8144_11545;Name=A8144_11545;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11545;pseudo=true
LYPH01000052.1	Protein Homology	CDS	11731	13320	.	+	0	ID=cds-A8144_11545;Parent=gene-A8144_11545;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005078692.1;locus_tag=A8144_11545;product=methylcrotonoyl-CoA carboxylase;pseudo=true;transl_table=11
LYPH01000052.1	Genbank	pseudogene	13326	14828	.	+	.	ID=gene-A8144_11550;Name=A8144_11550;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11550;pseudo=true
LYPH01000052.1	Protein Homology	CDS	13326	14828	.	+	0	ID=cds-A8144_11550;Parent=gene-A8144_11550;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019256925.1;locus_tag=A8144_11550;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000052.1	Genbank	pseudogene	14966	15981	.	+	.	ID=gene-A8144_11555;Name=A8144_11555;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11555;pseudo=true
LYPH01000052.1	Protein Homology	CDS	14966	15981	.	+	0	ID=cds-A8144_11555;Parent=gene-A8144_11555;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014375114.1;locus_tag=A8144_11555;product=acyl-CoA dehydrogenase;pseudo=true;transl_table=11
LYPH01000052.1	Genbank	gene	16521	16733	.	+	.	ID=gene-A8144_11560;Name=A8144_11560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11560
LYPH01000052.1	GeneMarkS+	CDS	16521	16733	.	+	0	ID=cds-OAR20301.1;Parent=gene-A8144_11560;Dbxref=NCBI_GP:OAR20301.1;Name=OAR20301.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11560;product=hypothetical protein;protein_id=OAR20301.1;transl_table=11
LYPH01000052.1	Genbank	gene	16835	17071	.	-	.	ID=gene-A8144_11565;Name=A8144_11565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11565
LYPH01000052.1	GeneMarkS+	CDS	16835	17071	.	-	0	ID=cds-OAR20302.1;Parent=gene-A8144_11565;Dbxref=NCBI_GP:OAR20302.1;Name=OAR20302.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11565;product=hypothetical protein;protein_id=OAR20302.1;transl_table=11
LYPH01000052.1	Genbank	pseudogene	17793	18855	.	+	.	ID=gene-A8144_11570;Name=A8144_11570;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11570;pseudo=true
LYPH01000052.1	Protein Homology	CDS	17793	18855	.	+	0	ID=cds-A8144_11570;Parent=gene-A8144_11570;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015290716.1;locus_tag=A8144_11570;product=2-oxoisovalerate dehydrogenase;pseudo=true;transl_table=11
LYPH01000052.1	Genbank	pseudogene	18836	20042	.	+	.	ID=gene-A8144_11575;Name=A8144_11575;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11575;pseudo=true
LYPH01000052.1	Protein Homology	CDS	18836	20042	.	+	0	ID=cds-A8144_11575;Parent=gene-A8144_11575;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011724290.1;locus_tag=A8144_11575;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000052.1	Genbank	gene	21166	21414	.	-	.	ID=gene-A8144_11580;Name=A8144_11580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11580
LYPH01000052.1	GeneMarkS+	CDS	21166	21414	.	-	0	ID=cds-OAR20303.1;Parent=gene-A8144_11580;Dbxref=NCBI_GP:OAR20303.1;Name=OAR20303.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11580;product=hypothetical protein;protein_id=OAR20303.1;transl_table=11
##sequence-region LYPH01000053.1 1 21749
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000053.1	Genbank	region	1	21749	.	+	.	ID=LYPH01000053.1:1..21749;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000053.1	Genbank	pseudogene	157	2135	.	-	.	ID=gene-A8144_11585;Name=A8144_11585;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11585;pseudo=true
LYPH01000053.1	Protein Homology	CDS	157	2135	.	-	0	ID=cds-A8144_11585;Parent=gene-A8144_11585;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015355464.1;locus_tag=A8144_11585;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000053.1	Genbank	gene	2558	4078	.	+	.	ID=gene-A8144_11590;Name=A8144_11590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11590
LYPH01000053.1	Protein Homology	CDS	2558	4078	.	+	0	ID=cds-OAR20286.1;Parent=gene-A8144_11590;Dbxref=NCBI_GP:OAR20286.1;Name=OAR20286.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003876467.1;locus_tag=A8144_11590;product=type VII secretion protein EccB;protein_id=OAR20286.1;transl_table=11
LYPH01000053.1	Genbank	gene	4075	8232	.	+	.	ID=gene-A8144_11595;Name=A8144_11595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11595
LYPH01000053.1	Protein Homology	CDS	4075	8232	.	+	0	ID=cds-OAR20287.1;Parent=gene-A8144_11595;Dbxref=NCBI_GP:OAR20287.1;Name=OAR20287.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020787503.1;locus_tag=A8144_11595;product=type VII secretion protein EccC;protein_id=OAR20287.1;transl_table=11
LYPH01000053.1	Genbank	gene	8537	8779	.	-	.	ID=gene-A8144_11600;Name=A8144_11600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11600
LYPH01000053.1	GeneMarkS+	CDS	8537	8779	.	-	0	ID=cds-OAR20288.1;Parent=gene-A8144_11600;Dbxref=NCBI_GP:OAR20288.1;Name=OAR20288.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11600;product=hypothetical protein;protein_id=OAR20288.1;transl_table=11
LYPH01000053.1	Genbank	gene	9150	9578	.	-	.	ID=gene-A8144_11605;Name=A8144_11605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11605
LYPH01000053.1	GeneMarkS+	CDS	9150	9578	.	-	0	ID=cds-OAR20289.1;Parent=gene-A8144_11605;Dbxref=NCBI_GP:OAR20289.1;Name=OAR20289.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11605;product=hypothetical protein;protein_id=OAR20289.1;transl_table=11
LYPH01000053.1	Genbank	gene	11250	12152	.	+	.	ID=gene-A8144_11610;Name=A8144_11610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11610
LYPH01000053.1	Protein Homology	CDS	11250	12152	.	+	0	ID=cds-OAR20290.1;Parent=gene-A8144_11610;Dbxref=NCBI_GP:OAR20290.1;Name=OAR20290.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011740937.1;locus_tag=A8144_11610;product=hypothetical protein;protein_id=OAR20290.1;transl_table=11
LYPH01000053.1	Genbank	gene	12416	13927	.	+	.	ID=gene-A8144_11615;Name=A8144_11615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11615
LYPH01000053.1	Protein Homology	CDS	12416	13927	.	+	0	ID=cds-OAR20291.1;Parent=gene-A8144_11615;Dbxref=NCBI_GP:OAR20291.1;Name=OAR20291.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011725134.1;locus_tag=A8144_11615;product=type VII secretion integral membrane protein EccD;protein_id=OAR20291.1;transl_table=11
LYPH01000053.1	Genbank	gene	13899	15662	.	+	.	ID=gene-A8144_11620;Name=A8144_11620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11620
LYPH01000053.1	Protein Homology	CDS	13899	15662	.	+	0	ID=cds-OAR20292.1;Parent=gene-A8144_11620;Dbxref=NCBI_GP:OAR20292.1;Name=OAR20292.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003876477.1;locus_tag=A8144_11620;product=peptidase S8;protein_id=OAR20292.1;transl_table=11
LYPH01000053.1	Genbank	gene	15683	16888	.	+	.	ID=gene-A8144_11625;Name=A8144_11625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11625
LYPH01000053.1	Protein Homology	CDS	15683	16888	.	+	0	ID=cds-OAR20293.1;Parent=gene-A8144_11625;Dbxref=NCBI_GP:OAR20293.1;Name=OAR20293.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908391.1;locus_tag=A8144_11625;product=type VII secretion protein EccE;protein_id=OAR20293.1;transl_table=11
LYPH01000053.1	Genbank	gene	16885	18717	.	+	.	ID=gene-A8144_11630;Name=A8144_11630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11630
LYPH01000053.1	Protein Homology	CDS	16885	18717	.	+	0	ID=cds-OAR20294.1;Parent=gene-A8144_11630;Dbxref=NCBI_GP:OAR20294.1;Name=OAR20294.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908390.1;locus_tag=A8144_11630;product=type VII secretion AAA-ATPase EccA;protein_id=OAR20294.1;transl_table=11
LYPH01000053.1	Genbank	gene	19915	20145	.	+	.	ID=gene-A8144_11635;Name=A8144_11635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11635
LYPH01000053.1	GeneMarkS+	CDS	19915	20145	.	+	0	ID=cds-OAR20295.1;Parent=gene-A8144_11635;Dbxref=NCBI_GP:OAR20295.1;Name=OAR20295.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11635;product=hypothetical protein;protein_id=OAR20295.1;transl_table=11
##sequence-region LYPH01000054.1 1 21629
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000054.1	Genbank	region	1	21629	.	+	.	ID=LYPH01000054.1:1..21629;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000054.1	Genbank	gene	34	396	.	-	.	ID=gene-A8144_11640;Name=A8144_11640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11640
LYPH01000054.1	Protein Homology	CDS	34	396	.	-	0	ID=cds-OAR20263.1;Parent=gene-A8144_11640;Dbxref=NCBI_GP:OAR20263.1;Name=OAR20263.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908116.1;locus_tag=A8144_11640;product=twin arginine-targeting protein translocase TatB;protein_id=OAR20263.1;transl_table=11
LYPH01000054.1	Genbank	gene	396	1910	.	-	.	ID=gene-A8144_11645;Name=A8144_11645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11645
LYPH01000054.1	Protein Homology	CDS	396	1910	.	-	0	ID=cds-OAR20283.1;Parent=gene-A8144_11645;Dbxref=NCBI_GP:OAR20283.1;Name=OAR20283.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007773721.1;locus_tag=A8144_11645;product=serine protease;protein_id=OAR20283.1;transl_table=11
LYPH01000054.1	Genbank	gene	2072	2491	.	-	.	ID=gene-A8144_11650;Name=A8144_11650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11650
LYPH01000054.1	Protein Homology	CDS	2072	2491	.	-	0	ID=cds-OAR20264.1;Parent=gene-A8144_11650;Dbxref=NCBI_GP:OAR20264.1;Name=OAR20264.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908114.1;locus_tag=A8144_11650;product=RNA polymerase subunit sigma-70;protein_id=OAR20264.1;transl_table=11
LYPH01000054.1	Genbank	gene	2638	3411	.	-	.	ID=gene-A8144_11655;Name=A8144_11655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11655
LYPH01000054.1	Protein Homology	CDS	2638	3411	.	-	0	ID=cds-OAR20284.1;Parent=gene-A8144_11655;Dbxref=NCBI_GP:OAR20284.1;Name=OAR20284.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007169154.1;locus_tag=A8144_11655;product=RNA polymerase sigma factor SigE;protein_id=OAR20284.1;transl_table=11
LYPH01000054.1	Genbank	gene	3709	4383	.	+	.	ID=gene-A8144_11660;Name=A8144_11660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11660
LYPH01000054.1	Protein Homology	CDS	3709	4383	.	+	0	ID=cds-OAR20265.1;Parent=gene-A8144_11660;Dbxref=NCBI_GP:OAR20265.1;Name=OAR20265.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCA7.1;locus_tag=A8144_11660;product=methyltransferase;protein_id=OAR20265.1;transl_table=11
LYPH01000054.1	Genbank	pseudogene	4427	5071	.	+	.	ID=gene-A8144_11665;Name=A8144_11665;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11665;pseudo=true
LYPH01000054.1	Protein Homology	CDS	4427	5071	.	+	0	ID=cds-A8144_11665;Parent=gene-A8144_11665;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008254623.1;locus_tag=A8144_11665;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000054.1	Genbank	pseudogene	5095	5951	.	+	.	ID=gene-A8144_11670;Name=A8144_11670;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11670;pseudo=true
LYPH01000054.1	Protein Homology	CDS	5095	5951	.	+	0	ID=cds-A8144_11670;Parent=gene-A8144_11670;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009956310.1;locus_tag=A8144_11670;product=ABC transporter ATP-binding protein;pseudo=true;transl_table=11
LYPH01000054.1	Genbank	gene	5997	6290	.	+	.	ID=gene-A8144_11675;Name=A8144_11675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11675
LYPH01000054.1	GeneMarkS+	CDS	5997	6290	.	+	0	ID=cds-OAR20266.1;Parent=gene-A8144_11675;Dbxref=NCBI_GP:OAR20266.1;Name=OAR20266.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11675;product=hypothetical protein;protein_id=OAR20266.1;transl_table=11
LYPH01000054.1	Genbank	gene	6575	6904	.	+	.	ID=gene-A8144_11680;Name=A8144_11680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11680
LYPH01000054.1	GeneMarkS+	CDS	6575	6904	.	+	0	ID=cds-OAR20267.1;Parent=gene-A8144_11680;Dbxref=NCBI_GP:OAR20267.1;Name=OAR20267.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11680;product=hypothetical protein;protein_id=OAR20267.1;transl_table=11
LYPH01000054.1	Genbank	gene	7061	7297	.	-	.	ID=gene-A8144_11685;Name=A8144_11685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11685
LYPH01000054.1	GeneMarkS+	CDS	7061	7297	.	-	0	ID=cds-OAR20268.1;Parent=gene-A8144_11685;Dbxref=NCBI_GP:OAR20268.1;Name=OAR20268.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11685;product=hypothetical protein;protein_id=OAR20268.1;transl_table=11
LYPH01000054.1	Genbank	gene	7479	8132	.	-	.	ID=gene-A8144_11690;Name=A8144_11690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11690
LYPH01000054.1	Protein Homology	CDS	7479	8132	.	-	0	ID=cds-OAR20269.1;Parent=gene-A8144_11690;Dbxref=NCBI_GP:OAR20269.1;Name=OAR20269.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908111.1;locus_tag=A8144_11690;product=TetR family transcriptional regulator;protein_id=OAR20269.1;transl_table=11
LYPH01000054.1	Genbank	gene	8206	9420	.	-	.	ID=gene-A8144_11695;Name=A8144_11695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11695
LYPH01000054.1	Protein Homology	CDS	8206	9420	.	-	0	ID=cds-OAR20270.1;Parent=gene-A8144_11695;Dbxref=NCBI_GP:OAR20270.1;Name=OAR20270.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:A1TDM8.1;locus_tag=A8144_11695;product=glucose-1-phosphate adenylyltransferase;protein_id=OAR20270.1;transl_table=11
LYPH01000054.1	Genbank	pseudogene	9600	10775	.	+	.	ID=gene-A8144_11700;Name=A8144_11700;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11700;pseudo=true
LYPH01000054.1	Protein Homology	CDS	9600	10775	.	+	0	ID=cds-A8144_11700;Parent=gene-A8144_11700;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007773706.1;locus_tag=A8144_11700;product=glycosyl transferase family 1;pseudo=true;transl_table=11
LYPH01000054.1	Genbank	gene	10765	10992	.	-	.	ID=gene-A8144_11705;Name=A8144_11705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11705
LYPH01000054.1	Protein Homology	CDS	10765	10992	.	-	0	ID=cds-OAR20271.1;Parent=gene-A8144_11705;Dbxref=NCBI_GP:OAR20271.1;Name=OAR20271.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003406247.1;locus_tag=A8144_11705;product=hypothetical protein;protein_id=OAR20271.1;transl_table=11
LYPH01000054.1	Genbank	gene	11206	11784	.	-	.	ID=gene-A8144_11710;Name=A8144_11710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11710
LYPH01000054.1	Protein Homology	CDS	11206	11784	.	-	0	ID=cds-OAR20272.1;Parent=gene-A8144_11710;Dbxref=NCBI_GP:OAR20272.1;Name=OAR20272.1;Note=constitutive%2C catalyzes the hydrolysis of alkylated DNA%2C releasing 3-methyladenine;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908108.1;locus_tag=A8144_11710;product=3-methyladenine DNA glycosylase;protein_id=OAR20272.1;transl_table=11
LYPH01000054.1	Genbank	gene	11781	12125	.	-	.	ID=gene-A8144_11715;Name=A8144_11715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11715
LYPH01000054.1	Protein Homology	CDS	11781	12125	.	-	0	ID=cds-OAR20273.1;Parent=gene-A8144_11715;Dbxref=NCBI_GP:OAR20273.1;Name=OAR20273.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908107.1;locus_tag=A8144_11715;product=cell division protein DivIVA;protein_id=OAR20273.1;transl_table=11
LYPH01000054.1	Genbank	gene	12141	13121	.	-	.	ID=gene-A8144_11720;Name=A8144_11720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11720
LYPH01000054.1	Protein Homology	CDS	12141	13121	.	-	0	ID=cds-OAR20274.1;Parent=gene-A8144_11720;Dbxref=NCBI_GP:OAR20274.1;Name=OAR20274.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908106.1;locus_tag=A8144_11720;product=glucosyl-3-phosphoglycerate synthase;protein_id=OAR20274.1;transl_table=11
LYPH01000054.1	Genbank	gene	13118	13993	.	-	.	ID=gene-A8144_11725;Name=A8144_11725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11725
LYPH01000054.1	Protein Homology	CDS	13118	13993	.	-	0	ID=cds-OAR20275.1;Parent=gene-A8144_11725;Dbxref=NCBI_GP:OAR20275.1;Name=OAR20275.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P0C0X2.1;locus_tag=A8144_11725;product=dihydropteroate synthase;protein_id=OAR20275.1;transl_table=11
LYPH01000054.1	Genbank	pseudogene	14091	15695	.	-	.	ID=gene-A8144_11730;Name=A8144_11730;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11730;pseudo=true
LYPH01000054.1	Protein Homology	CDS	14091	15695	.	-	0	ID=cds-A8144_11730;Parent=gene-A8144_11730;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011739202.1;locus_tag=A8144_11730;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000054.1	Genbank	gene	15764	16327	.	-	.	ID=gene-A8144_11735;Name=A8144_11735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11735
LYPH01000054.1	Protein Homology	CDS	15764	16327	.	-	0	ID=cds-OAR20276.1;Parent=gene-A8144_11735;Dbxref=NCBI_GP:OAR20276.1;Name=OAR20276.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908104.1;locus_tag=A8144_11735;product=Rossman fold protein%2C TIGR00730 family;protein_id=OAR20276.1;transl_table=11
LYPH01000054.1	Genbank	gene	16465	16659	.	+	.	ID=gene-A8144_11740;Name=A8144_11740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11740
LYPH01000054.1	GeneMarkS+	CDS	16465	16659	.	+	0	ID=cds-OAR20277.1;Parent=gene-A8144_11740;Dbxref=NCBI_GP:OAR20277.1;Name=OAR20277.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11740;product=hypothetical protein;protein_id=OAR20277.1;transl_table=11
LYPH01000054.1	Genbank	gene	17188	17622	.	+	.	ID=gene-A8144_11745;Name=A8144_11745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11745
LYPH01000054.1	GeneMarkS+	CDS	17188	17622	.	+	0	ID=cds-OAR20278.1;Parent=gene-A8144_11745;Dbxref=NCBI_GP:OAR20278.1;Name=OAR20278.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11745;product=hypothetical protein;protein_id=OAR20278.1;transl_table=11
LYPH01000054.1	Genbank	gene	18005	19069	.	-	.	ID=gene-A8144_11750;Name=A8144_11750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11750
LYPH01000054.1	Protein Homology	CDS	18005	19069	.	-	0	ID=cds-OAR20285.1;Parent=gene-A8144_11750;Dbxref=NCBI_GP:OAR20285.1;Name=OAR20285.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007773688.1;locus_tag=A8144_11750;product=succinyl-diaminopimelate desuccinylase;protein_id=OAR20285.1;transl_table=11
LYPH01000054.1	Genbank	gene	19123	20076	.	+	.	ID=gene-A8144_11755;Name=A8144_11755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11755
LYPH01000054.1	Protein Homology	CDS	19123	20076	.	+	0	ID=cds-OAR20279.1;Parent=gene-A8144_11755;Dbxref=NCBI_GP:OAR20279.1;Name=OAR20279.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908102.1;locus_tag=A8144_11755;product=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase;protein_id=OAR20279.1;transl_table=11
LYPH01000054.1	Genbank	gene	20167	20520	.	-	.	ID=gene-A8144_11760;Name=A8144_11760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11760
LYPH01000054.1	Protein Homology	CDS	20167	20520	.	-	0	ID=cds-OAR20280.1;Parent=gene-A8144_11760;Dbxref=NCBI_GP:OAR20280.1;Name=OAR20280.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908101.1;locus_tag=A8144_11760;product=hypothetical protein;protein_id=OAR20280.1;transl_table=11
LYPH01000054.1	Genbank	gene	20695	20982	.	-	.	ID=gene-A8144_11765;Name=A8144_11765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11765
LYPH01000054.1	Protein Homology	CDS	20695	20982	.	-	0	ID=cds-OAR20281.1;Parent=gene-A8144_11765;Dbxref=NCBI_GP:OAR20281.1;Name=OAR20281.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49946.1;locus_tag=A8144_11765;product=type VII secretion protein EsxI;protein_id=OAR20281.1;transl_table=11
LYPH01000054.1	Genbank	gene	21034	21336	.	-	.	ID=gene-A8144_11770;Name=A8144_11770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11770
LYPH01000054.1	Protein Homology	CDS	21034	21336	.	-	0	ID=cds-OAR20282.1;Parent=gene-A8144_11770;Dbxref=NCBI_GP:OAR20282.1;Name=OAR20282.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49945.1;locus_tag=A8144_11770;product=ESAT-6-like protein Y;protein_id=OAR20282.1;transl_table=11
LYPH01000054.1	Genbank	pseudogene	21425	21629	.	-	.	ID=gene-A8144_11775;Name=A8144_11775;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11775;pseudo=true
LYPH01000054.1	GeneMarkS+	CDS	21425	21629	.	-	1	ID=cds-A8144_11775;Parent=gene-A8144_11775;Note=incomplete%3B too short partial abutting assembly gap%3B missing start;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11775;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region LYPH01000055.1 1 112681
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000055.1	Genbank	region	1	112681	.	+	.	ID=LYPH01000055.1:1..112681;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000055.1	Genbank	gene	124	366	.	-	.	ID=gene-A8144_02675;Name=A8144_02675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02675
LYPH01000055.1	Protein Homology	CDS	124	366	.	-	0	ID=cds-OAR20185.1;Parent=gene-A8144_02675;Dbxref=NCBI_GP:OAR20185.1;Name=OAR20185.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908248.1;locus_tag=A8144_02675;product=hypothetical protein;protein_id=OAR20185.1;transl_table=11
LYPH01000055.1	Genbank	gene	1646	1867	.	+	.	ID=gene-A8144_02680;Name=A8144_02680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02680
LYPH01000055.1	GeneMarkS+	CDS	1646	1867	.	+	0	ID=cds-OAR20186.1;Parent=gene-A8144_02680;Dbxref=NCBI_GP:OAR20186.1;Name=OAR20186.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02680;product=hypothetical protein;protein_id=OAR20186.1;transl_table=11
LYPH01000055.1	Genbank	gene	1870	2148	.	+	.	ID=gene-A8144_02685;Name=A8144_02685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02685
LYPH01000055.1	GeneMarkS+	CDS	1870	2148	.	+	0	ID=cds-OAR20187.1;Parent=gene-A8144_02685;Dbxref=NCBI_GP:OAR20187.1;Name=OAR20187.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02685;product=hypothetical protein;protein_id=OAR20187.1;transl_table=11
LYPH01000055.1	Genbank	gene	3708	4301	.	-	.	ID=gene-A8144_02690;Name=A8144_02690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02690
LYPH01000055.1	Protein Homology	CDS	3708	4301	.	-	0	ID=cds-OAR20188.1;Parent=gene-A8144_02690;Dbxref=NCBI_GP:OAR20188.1;Name=OAR20188.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907804.1;locus_tag=A8144_02690;product=hypothetical protein;protein_id=OAR20188.1;transl_table=11
LYPH01000055.1	Genbank	pseudogene	4607	6391	.	-	.	ID=gene-A8144_02695;Name=A8144_02695;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02695;pseudo=true
LYPH01000055.1	Protein Homology	CDS	4607	6391	.	-	0	ID=cds-A8144_02695;Parent=gene-A8144_02695;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011725410.1;locus_tag=A8144_02695;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000055.1	Genbank	gene	6717	7070	.	+	.	ID=gene-A8144_02700;Name=A8144_02700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02700
LYPH01000055.1	GeneMarkS+	CDS	6717	7070	.	+	0	ID=cds-OAR20189.1;Parent=gene-A8144_02700;Dbxref=NCBI_GP:OAR20189.1;Name=OAR20189.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02700;product=hypothetical protein;protein_id=OAR20189.1;transl_table=11
LYPH01000055.1	Genbank	gene	7358	8335	.	-	.	ID=gene-A8144_02705;Name=A8144_02705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02705
LYPH01000055.1	Protein Homology	CDS	7358	8335	.	-	0	ID=cds-OAR20251.1;Parent=gene-A8144_02705;Dbxref=NCBI_GP:OAR20251.1;Name=OAR20251.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:A1T8K7.1;locus_tag=A8144_02705;product=DNA-binding protein WhiA;protein_id=OAR20251.1;transl_table=11
LYPH01000055.1	Genbank	gene	8332	9411	.	-	.	ID=gene-A8144_02710;Name=A8144_02710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02710
LYPH01000055.1	Protein Homology	CDS	8332	9411	.	-	0	ID=cds-OAR20190.1;Parent=gene-A8144_02710;Dbxref=NCBI_GP:OAR20190.1;Name=OAR20190.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCN9.1;locus_tag=A8144_02710;product=hypothetical protein;protein_id=OAR20190.1;transl_table=11
LYPH01000055.1	Genbank	gene	9408	10304	.	-	.	ID=gene-A8144_02715;Name=A8144_02715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02715
LYPH01000055.1	Protein Homology	CDS	9408	10304	.	-	0	ID=cds-OAR20191.1;Parent=gene-A8144_02715;Dbxref=NCBI_GP:OAR20191.1;Name=OAR20191.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCP0.1;locus_tag=A8144_02715;product=RNase adaptor protein RapZ;protein_id=OAR20191.1;transl_table=11
LYPH01000055.1	Genbank	gene	10301	12244	.	-	.	ID=gene-A8144_02720;Name=A8144_02720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02720
LYPH01000055.1	Protein Homology	CDS	10301	12244	.	-	0	ID=cds-OAR20192.1;Parent=gene-A8144_02720;Dbxref=NCBI_GP:OAR20192.1;Name=OAR20192.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCP1.1;locus_tag=A8144_02720;product=excinuclease ABC subunit C;protein_id=OAR20192.1;transl_table=11
LYPH01000055.1	Genbank	gene	12559	13029	.	-	.	ID=gene-A8144_02725;Name=A8144_02725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02725
LYPH01000055.1	Protein Homology	CDS	12559	13029	.	-	0	ID=cds-OAR20193.1;Parent=gene-A8144_02725;Dbxref=NCBI_GP:OAR20193.1;Name=OAR20193.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907799.1;locus_tag=A8144_02725;product=hypothetical protein;protein_id=OAR20193.1;transl_table=11
LYPH01000055.1	Genbank	gene	13026	13508	.	-	.	ID=gene-A8144_02730;Name=A8144_02730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02730
LYPH01000055.1	Protein Homology	CDS	13026	13508	.	-	0	ID=cds-OAR20194.1;Parent=gene-A8144_02730;Dbxref=NCBI_GP:OAR20194.1;Name=OAR20194.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCP3.1;locus_tag=A8144_02730;product=6%2C7-dimethyl-8-ribityllumazine synthase;protein_id=OAR20194.1;transl_table=11
LYPH01000055.1	Genbank	gene	13505	14782	.	-	.	ID=gene-A8144_02735;Name=A8144_02735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02735
LYPH01000055.1	Protein Homology	CDS	13505	14782	.	-	0	ID=cds-OAR20252.1;Parent=gene-A8144_02735;Dbxref=NCBI_GP:OAR20252.1;Name=OAR20252.1;Note=bifunctional enzyme DHBP synthase/GTP cyclohydrolase II%3B functions in riboflavin synthesis%3B converts GTP to 2%2C5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine%3B converts ribulose 5-phopshate to 3%2C4-dihydroxy-2-butanone 4-phosphate;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005146249.1;locus_tag=A8144_02735;product=bifunctional 3%2C4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II;protein_id=OAR20252.1;transl_table=11
LYPH01000055.1	Genbank	gene	14939	15562	.	-	.	ID=gene-A8144_02740;Name=A8144_02740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02740
LYPH01000055.1	Protein Homology	CDS	14939	15562	.	-	0	ID=cds-OAR20195.1;Parent=gene-A8144_02740;Dbxref=NCBI_GP:OAR20195.1;Name=OAR20195.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907796.1;locus_tag=A8144_02740;product=riboflavin synthase subunit alpha;protein_id=OAR20195.1;transl_table=11
LYPH01000055.1	Genbank	gene	15719	16435	.	+	.	ID=gene-A8144_02745;Name=A8144_02745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02745
LYPH01000055.1	Protein Homology	CDS	15719	16435	.	+	0	ID=cds-OAR20196.1;Parent=gene-A8144_02745;Dbxref=NCBI_GP:OAR20196.1;Name=OAR20196.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCP6.1;locus_tag=A8144_02745;product=hypothetical protein;protein_id=OAR20196.1;transl_table=11
LYPH01000055.1	Genbank	gene	16435	17964	.	+	.	ID=gene-A8144_02750;Name=A8144_02750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02750
LYPH01000055.1	Protein Homology	CDS	16435	17964	.	+	0	ID=cds-OAR20197.1;Parent=gene-A8144_02750;Dbxref=NCBI_GP:OAR20197.1;Name=OAR20197.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907794.1;locus_tag=A8144_02750;product=MFS transporter;protein_id=OAR20197.1;transl_table=11
LYPH01000055.1	Genbank	gene	18008	19027	.	-	.	ID=gene-A8144_02755;Name=A8144_02755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02755
LYPH01000055.1	Protein Homology	CDS	18008	19027	.	-	0	ID=cds-OAR20198.1;Parent=gene-A8144_02755;Dbxref=NCBI_GP:OAR20198.1;Name=OAR20198.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907793.1;locus_tag=A8144_02755;product=riboflavin biosynthesis protein RibD;protein_id=OAR20198.1;transl_table=11
LYPH01000055.1	Genbank	gene	19024	19698	.	-	.	ID=gene-A8144_02760;Name=A8144_02760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02760
LYPH01000055.1	Protein Homology	CDS	19024	19698	.	-	0	ID=cds-OAR20253.1;Parent=gene-A8144_02760;Dbxref=NCBI_GP:OAR20253.1;Name=OAR20253.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCP9.1;locus_tag=A8144_02760;product=ribulose-phosphate 3-epimerase;protein_id=OAR20253.1;transl_table=11
LYPH01000055.1	Genbank	pseudogene	19746	21065	.	-	.	ID=gene-A8144_02765;Name=A8144_02765;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02765;pseudo=true
LYPH01000055.1	Protein Homology	CDS	19746	21065	.	-	0	ID=cds-A8144_02765;Parent=gene-A8144_02765;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011725428.1;locus_tag=A8144_02765;product=rRNA cytosine-C5-methyltransferase;pseudo=true;transl_table=11
LYPH01000055.1	Genbank	gene	21155	22105	.	-	.	ID=gene-A8144_02770;Name=A8144_02770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02770
LYPH01000055.1	Protein Homology	CDS	21155	22105	.	-	0	ID=cds-OAR20254.1;Parent=gene-A8144_02770;Dbxref=NCBI_GP:OAR20254.1;Name=OAR20254.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:B2HP60.1;locus_tag=A8144_02770;product=methionyl-tRNA formyltransferase;protein_id=OAR20254.1;transl_table=11
LYPH01000055.1	Genbank	gene	22292	23116	.	+	.	ID=gene-A8144_02775;Name=A8144_02775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02775
LYPH01000055.1	Protein Homology	CDS	22292	23116	.	+	0	ID=cds-OAR20199.1;Parent=gene-A8144_02775;Dbxref=NCBI_GP:OAR20199.1;Name=OAR20199.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907790.1;locus_tag=A8144_02775;product=hypothetical protein;protein_id=OAR20199.1;transl_table=11
LYPH01000055.1	Genbank	gene	23298	23783	.	-	.	ID=gene-A8144_02780;Name=A8144_02780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02780
LYPH01000055.1	Protein Homology	CDS	23298	23783	.	-	0	ID=cds-OAR20200.1;Parent=gene-A8144_02780;Dbxref=NCBI_GP:OAR20200.1;Name=OAR20200.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907789.1;locus_tag=A8144_02780;product=MarR family transcriptional regulator;protein_id=OAR20200.1;transl_table=11
LYPH01000055.1	Genbank	gene	24899	26854	.	-	.	ID=gene-A8144_02785;Name=A8144_02785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02785
LYPH01000055.1	Protein Homology	CDS	24899	26854	.	-	0	ID=cds-OAR20255.1;Parent=gene-A8144_02785;Dbxref=NCBI_GP:OAR20255.1;Name=OAR20255.1;Note=binding of PriA to forked DNA starts the assembly of the primosome%2C also possesses 3'-5' helicase activity;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCQ3.1;locus_tag=A8144_02785;product=primosome assembly protein PriA;protein_id=OAR20255.1;transl_table=11
LYPH01000055.1	Genbank	pseudogene	27593	28583	.	+	.	ID=gene-A8144_02790;Name=A8144_02790;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02790;pseudo=true
LYPH01000055.1	Protein Homology	CDS	27593	28583	.	+	0	ID=cds-A8144_02790;Parent=gene-A8144_02790;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015355814.1;locus_tag=A8144_02790;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000055.1	Genbank	pseudogene	28611	29537	.	+	.	ID=gene-A8144_02795;Name=A8144_02795;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02795;pseudo=true
LYPH01000055.1	Protein Homology	CDS	28611	29537	.	+	0	ID=cds-A8144_02795;Parent=gene-A8144_02795;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012393972.1;locus_tag=A8144_02795;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000055.1	Genbank	gene	30182	31393	.	-	.	ID=gene-A8144_02800;Name=A8144_02800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02800
LYPH01000055.1	Protein Homology	CDS	30182	31393	.	-	0	ID=cds-OAR20201.1;Parent=gene-A8144_02800;Dbxref=NCBI_GP:OAR20201.1;Name=OAR20201.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:B2HP50.1;locus_tag=A8144_02800;product=methionine adenosyltransferase;protein_id=OAR20201.1;transl_table=11
LYPH01000055.1	Genbank	gene	31522	32781	.	-	.	ID=gene-A8144_02805;Name=A8144_02805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02805
LYPH01000055.1	Protein Homology	CDS	31522	32781	.	-	0	ID=cds-OAR20202.1;Parent=gene-A8144_02805;Dbxref=NCBI_GP:OAR20202.1;Name=OAR20202.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907786.1;locus_tag=A8144_02805;product=phosphopantothenate synthase;protein_id=OAR20202.1;transl_table=11
LYPH01000055.1	Genbank	gene	32802	33134	.	-	.	ID=gene-A8144_02810;Name=A8144_02810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02810
LYPH01000055.1	Protein Homology	CDS	32802	33134	.	-	0	ID=cds-OAR20203.1;Parent=gene-A8144_02810;Dbxref=NCBI_GP:OAR20203.1;Name=OAR20203.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCQ6.1;locus_tag=A8144_02810;product=DNA-directed RNA polymerase subunit omega;protein_id=OAR20203.1;transl_table=11
LYPH01000055.1	Genbank	gene	33216	33848	.	-	.	ID=gene-A8144_02815;Name=A8144_02815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02815
LYPH01000055.1	Protein Homology	CDS	33216	33848	.	-	0	ID=cds-OAR20256.1;Parent=gene-A8144_02815;Dbxref=NCBI_GP:OAR20256.1;Name=OAR20256.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCQ7.1;locus_tag=A8144_02815;product=guanylate kinase;protein_id=OAR20256.1;transl_table=11
LYPH01000055.1	Genbank	gene	33902	34219	.	-	.	ID=gene-A8144_02820;Name=A8144_02820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02820
LYPH01000055.1	Protein Homology	CDS	33902	34219	.	-	0	ID=cds-OAR20204.1;Parent=gene-A8144_02820;Dbxref=NCBI_GP:OAR20204.1;Name=OAR20204.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907783.1;locus_tag=A8144_02820;product=integration host factor;protein_id=OAR20204.1;transl_table=11
LYPH01000055.1	Genbank	gene	34670	34861	.	-	.	ID=gene-A8144_02825;Name=A8144_02825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02825
LYPH01000055.1	GeneMarkS+	CDS	34670	34861	.	-	0	ID=cds-OAR20205.1;Parent=gene-A8144_02825;Dbxref=NCBI_GP:OAR20205.1;Name=OAR20205.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02825;product=hypothetical protein;protein_id=OAR20205.1;transl_table=11
LYPH01000055.1	Genbank	gene	35064	36680	.	-	.	ID=gene-A8144_02830;Name=A8144_02830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02830
LYPH01000055.1	Protein Homology	CDS	35064	36680	.	-	0	ID=cds-OAR20206.1;Parent=gene-A8144_02830;Dbxref=NCBI_GP:OAR20206.1;Name=OAR20206.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907782.1;locus_tag=A8144_02830;product=hypothetical protein;protein_id=OAR20206.1;transl_table=11
LYPH01000055.1	Genbank	gene	36677	36985	.	-	.	ID=gene-A8144_02835;Name=A8144_02835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02835
LYPH01000055.1	Protein Homology	CDS	36677	36985	.	-	0	ID=cds-OAR20207.1;Parent=gene-A8144_02835;Dbxref=NCBI_GP:OAR20207.1;Name=OAR20207.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907781.1;locus_tag=A8144_02835;product=cell motility protein;protein_id=OAR20207.1;transl_table=11
LYPH01000055.1	Genbank	gene	37272	38120	.	-	.	ID=gene-A8144_02840;Name=A8144_02840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02840
LYPH01000055.1	Protein Homology	CDS	37272	38120	.	-	0	ID=cds-OAR20208.1;Parent=gene-A8144_02840;Dbxref=NCBI_GP:OAR20208.1;Name=OAR20208.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCR1.1;locus_tag=A8144_02840;product=orotidine 5'-phosphate decarboxylase;protein_id=OAR20208.1;transl_table=11
LYPH01000055.1	Genbank	gene	38117	41482	.	-	.	ID=gene-A8144_02845;Name=A8144_02845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02845
LYPH01000055.1	Protein Homology	CDS	38117	41482	.	-	0	ID=cds-OAR20209.1;Parent=gene-A8144_02845;Dbxref=NCBI_GP:OAR20209.1;Name=OAR20209.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCR2.2;locus_tag=A8144_02845;product=carbamoyl phosphate synthase large subunit;protein_id=OAR20209.1;transl_table=11
LYPH01000055.1	Genbank	gene	41565	42692	.	-	.	ID=gene-A8144_02850;Name=A8144_02850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02850
LYPH01000055.1	Protein Homology	CDS	41565	42692	.	-	0	ID=cds-OAR20257.1;Parent=gene-A8144_02850;Dbxref=NCBI_GP:OAR20257.1;Name=OAR20257.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCR3.1;locus_tag=A8144_02850;product=carbamoyl phosphate synthase small subunit;protein_id=OAR20257.1;transl_table=11
LYPH01000055.1	Genbank	pseudogene	42769	43226	.	-	.	ID=gene-A8144_02855;Name=A8144_02855;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02855;pseudo=true
LYPH01000055.1	Protein Homology	CDS	42769	43226	.	-	0	ID=cds-A8144_02855;Parent=gene-A8144_02855;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020728547.1;locus_tag=A8144_02855;product=transporter;pseudo=true;transl_table=11
LYPH01000055.1	Genbank	gene	43279	44571	.	-	.	ID=gene-A8144_02860;Name=pyrC;gbkey=Gene;gene=pyrC;gene_biotype=protein_coding;locus_tag=A8144_02860
LYPH01000055.1	Protein Homology	CDS	43279	44571	.	-	0	ID=cds-OAR20210.1;Parent=gene-A8144_02860;Dbxref=NCBI_GP:OAR20210.1;Name=OAR20210.1;Note=catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis;gbkey=CDS;gene=pyrC;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCR4.1;locus_tag=A8144_02860;product=dihydroorotase;protein_id=OAR20210.1;transl_table=11
LYPH01000055.1	Genbank	gene	44568	45530	.	-	.	ID=gene-A8144_02865;Name=A8144_02865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02865
LYPH01000055.1	Protein Homology	CDS	44568	45530	.	-	0	ID=cds-OAR20211.1;Parent=gene-A8144_02865;Dbxref=NCBI_GP:OAR20211.1;Name=OAR20211.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009951741.1;locus_tag=A8144_02865;product=aspartate carbamoyltransferase;protein_id=OAR20211.1;transl_table=11
LYPH01000055.1	Genbank	pseudogene	45530	46073	.	-	.	ID=gene-A8144_02870;Name=A8144_02870;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02870;pseudo=true
LYPH01000055.1	Protein Homology	CDS	45530	46073	.	-	0	ID=cds-A8144_02870;Parent=gene-A8144_02870;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q741H6.1;locus_tag=A8144_02870;product=bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase;pseudo=true;transl_table=11
LYPH01000055.1	Genbank	pseudogene	46281	47511	.	+	.	ID=gene-A8144_02875;Name=A8144_02875;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02875;pseudo=true
LYPH01000055.1	Protein Homology	CDS	46281	47511	.	+	0	ID=cds-A8144_02875;Parent=gene-A8144_02875;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015456246.1;locus_tag=A8144_02875;product=HNH endonuclease;pseudo=true;transl_table=11
LYPH01000055.1	Genbank	gene	48313	48618	.	+	.	ID=gene-A8144_02880;Name=A8144_02880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02880
LYPH01000055.1	GeneMarkS+	CDS	48313	48618	.	+	0	ID=cds-OAR20212.1;Parent=gene-A8144_02880;Dbxref=NCBI_GP:OAR20212.1;Name=OAR20212.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02880;product=hypothetical protein;protein_id=OAR20212.1;transl_table=11
LYPH01000055.1	Genbank	gene	49451	49858	.	-	.	ID=gene-A8144_02885;Name=A8144_02885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02885
LYPH01000055.1	GeneMarkS+	CDS	49451	49858	.	-	0	ID=cds-OAR20213.1;Parent=gene-A8144_02885;Dbxref=NCBI_GP:OAR20213.1;Name=OAR20213.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02885;product=hypothetical protein;protein_id=OAR20213.1;transl_table=11
LYPH01000055.1	Genbank	gene	51182	51436	.	+	.	ID=gene-A8144_02890;Name=A8144_02890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02890
LYPH01000055.1	Protein Homology	CDS	51182	51436	.	+	0	ID=cds-OAR20214.1;Parent=gene-A8144_02890;Dbxref=NCBI_GP:OAR20214.1;Name=OAR20214.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907775.1;locus_tag=A8144_02890;product=hypothetical protein;protein_id=OAR20214.1;transl_table=11
LYPH01000055.1	Genbank	pseudogene	52107	53301	.	+	.	ID=gene-A8144_02895;Name=A8144_02895;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02895;pseudo=true
LYPH01000055.1	Protein Homology	CDS	52107	53301	.	+	0	ID=cds-A8144_02895;Parent=gene-A8144_02895;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011739868.1;locus_tag=A8144_02895;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000055.1	Genbank	gene	53446	53622	.	-	.	ID=gene-A8144_02900;Name=A8144_02900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02900
LYPH01000055.1	Protein Homology	CDS	53446	53622	.	-	0	ID=cds-OAR20215.1;Parent=gene-A8144_02900;Dbxref=NCBI_GP:OAR20215.1;Name=OAR20215.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907774.1;locus_tag=A8144_02900;product=hypothetical protein;protein_id=OAR20215.1;transl_table=11
LYPH01000055.1	Genbank	gene	53619	56471	.	-	.	ID=gene-A8144_02905;Name=A8144_02905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02905
LYPH01000055.1	Protein Homology	CDS	53619	56471	.	-	0	ID=cds-OAR20216.1;Parent=gene-A8144_02905;Dbxref=NCBI_GP:OAR20216.1;Name=OAR20216.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907773.1;locus_tag=A8144_02905;product=amino acid decarboxylase;protein_id=OAR20216.1;transl_table=11
LYPH01000055.1	Genbank	gene	57009	57581	.	-	.	ID=gene-A8144_02910;Name=A8144_02910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02910
LYPH01000055.1	Protein Homology	CDS	57009	57581	.	-	0	ID=cds-OAR20217.1;Parent=gene-A8144_02910;Dbxref=NCBI_GP:OAR20217.1;Name=OAR20217.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCR9.1;locus_tag=A8144_02910;product=N utilization substance protein B;protein_id=OAR20217.1;transl_table=11
LYPH01000055.1	Genbank	gene	57584	58147	.	-	.	ID=gene-A8144_02915;Name=A8144_02915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02915
LYPH01000055.1	Protein Homology	CDS	57584	58147	.	-	0	ID=cds-OAR20218.1;Parent=gene-A8144_02915;Dbxref=NCBI_GP:OAR20218.1;Name=OAR20218.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCS0.1;locus_tag=A8144_02915;product=elongation factor P;protein_id=OAR20218.1;transl_table=11
LYPH01000055.1	Genbank	gene	58163	59293	.	-	.	ID=gene-A8144_02920;Name=A8144_02920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02920
LYPH01000055.1	Protein Homology	CDS	58163	59293	.	-	0	ID=cds-OAR20219.1;Parent=gene-A8144_02920;Dbxref=NCBI_GP:OAR20219.1;Name=OAR20219.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907770.1;locus_tag=A8144_02920;product=X-Pro dipeptidase;protein_id=OAR20219.1;transl_table=11
LYPH01000055.1	Genbank	gene	59327	59935	.	+	.	ID=gene-A8144_02925;Name=A8144_02925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02925
LYPH01000055.1	Protein Homology	CDS	59327	59935	.	+	0	ID=cds-OAR20220.1;Parent=gene-A8144_02925;Dbxref=NCBI_GP:OAR20220.1;Name=OAR20220.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907769.1;locus_tag=A8144_02925;product=hypothetical protein;protein_id=OAR20220.1;transl_table=11
LYPH01000055.1	Genbank	gene	60024	60461	.	-	.	ID=gene-A8144_02930;Name=A8144_02930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02930
LYPH01000055.1	Protein Homology	CDS	60024	60461	.	-	0	ID=cds-OAR20221.1;Parent=gene-A8144_02930;Dbxref=NCBI_GP:OAR20221.1;Name=OAR20221.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCS3.1;locus_tag=A8144_02930;product=type II 3-dehydroquinate dehydratase;protein_id=OAR20221.1;transl_table=11
LYPH01000055.1	Genbank	gene	60461	61546	.	-	.	ID=gene-A8144_02935;Name=A8144_02935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02935
LYPH01000055.1	Protein Homology	CDS	60461	61546	.	-	0	ID=cds-OAR20222.1;Parent=gene-A8144_02935;Dbxref=NCBI_GP:OAR20222.1;Name=OAR20222.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCS4.1;locus_tag=A8144_02935;product=3-dehydroquinate synthase;protein_id=OAR20222.1;transl_table=11
LYPH01000055.1	Genbank	gene	61543	62142	.	-	.	ID=gene-A8144_02940;Name=A8144_02940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02940
LYPH01000055.1	Protein Homology	CDS	61543	62142	.	-	0	ID=cds-OAR20223.1;Parent=gene-A8144_02940;Dbxref=NCBI_GP:OAR20223.1;Name=OAR20223.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCS5.1;locus_tag=A8144_02940;product=shikimate kinase;protein_id=OAR20223.1;transl_table=11
LYPH01000055.1	Genbank	gene	62150	63373	.	-	.	ID=gene-A8144_02945;Name=A8144_02945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02945
LYPH01000055.1	Protein Homology	CDS	62150	63373	.	-	0	ID=cds-OAR20224.1;Parent=gene-A8144_02945;Dbxref=NCBI_GP:OAR20224.1;Name=OAR20224.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCS6.1;locus_tag=A8144_02945;product=chorismate synthase;protein_id=OAR20224.1;transl_table=11
LYPH01000055.1	Genbank	gene	63602	64438	.	-	.	ID=gene-A8144_02950;Name=A8144_02950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02950
LYPH01000055.1	Protein Homology	CDS	63602	64438	.	-	0	ID=cds-OAR20225.1;Parent=gene-A8144_02950;Dbxref=NCBI_GP:OAR20225.1;Name=OAR20225.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907764.1;locus_tag=A8144_02950;product=shikimate dehydrogenase;protein_id=OAR20225.1;transl_table=11
LYPH01000055.1	Genbank	gene	64416	65681	.	-	.	ID=gene-A8144_02955;Name=A8144_02955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02955
LYPH01000055.1	Protein Homology	CDS	64416	65681	.	-	0	ID=cds-OAR20226.1;Parent=gene-A8144_02955;Dbxref=NCBI_GP:OAR20226.1;Name=OAR20226.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907763.1;locus_tag=A8144_02955;product=aminodeoxychorismate lyase;protein_id=OAR20226.1;transl_table=11
LYPH01000055.1	Genbank	gene	65674	66228	.	-	.	ID=gene-A8144_02960;Name=A8144_02960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02960
LYPH01000055.1	Protein Homology	CDS	65674	66228	.	-	0	ID=cds-OAR20227.1;Parent=gene-A8144_02960;Dbxref=NCBI_GP:OAR20227.1;Name=OAR20227.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCS9.1;locus_tag=A8144_02960;product=Holliday junction DNA helicase RuvA;protein_id=OAR20227.1;transl_table=11
LYPH01000055.1	Genbank	gene	66229	68955	.	-	.	ID=gene-A8144_02965;Name=A8144_02965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02965
LYPH01000055.1	Protein Homology	CDS	66229	68955	.	-	0	ID=cds-OAR20228.1;Parent=gene-A8144_02965;Dbxref=NCBI_GP:OAR20228.1;Name=OAR20228.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCT0.1;locus_tag=A8144_02965;product=alanine--tRNA ligase;protein_id=OAR20228.1;transl_table=11
LYPH01000055.1	Genbank	pseudogene	69454	69989	.	+	.	ID=gene-A8144_02970;Name=A8144_02970;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02970;pseudo=true
LYPH01000055.1	Protein Homology	CDS	69454	69989	.	+	0	ID=cds-A8144_02970;Parent=gene-A8144_02970;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009955915.1;locus_tag=A8144_02970;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000055.1	Genbank	gene	70027	71370	.	-	.	ID=gene-A8144_02975;Name=A8144_02975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02975
LYPH01000055.1	Protein Homology	CDS	70027	71370	.	-	0	ID=cds-OAR20258.1;Parent=gene-A8144_02975;Dbxref=NCBI_GP:OAR20258.1;Name=OAR20258.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019684071.1;locus_tag=A8144_02975;product=AAA family ATPase;protein_id=OAR20258.1;transl_table=11
LYPH01000055.1	Genbank	pseudogene	71637	72679	.	-	.	ID=gene-A8144_02980;Name=A8144_02980;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_02980;pseudo=true
LYPH01000055.1	Protein Homology	CDS	71637	72679	.	-	0	ID=cds-A8144_02980;Parent=gene-A8144_02980;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011559721.1;locus_tag=A8144_02980;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000055.1	Genbank	gene	72672	73613	.	-	.	ID=gene-A8144_02985;Name=A8144_02985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02985
LYPH01000055.1	Protein Homology	CDS	72672	73613	.	-	0	ID=cds-OAR20259.1;Parent=gene-A8144_02985;Dbxref=NCBI_GP:OAR20259.1;Name=OAR20259.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907759.1;locus_tag=A8144_02985;product=hypothetical protein;protein_id=OAR20259.1;transl_table=11
LYPH01000055.1	Genbank	gene	74432	74869	.	-	.	ID=gene-A8144_02990;Name=A8144_02990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02990
LYPH01000055.1	GeneMarkS+	CDS	74432	74869	.	-	0	ID=cds-OAR20229.1;Parent=gene-A8144_02990;Dbxref=NCBI_GP:OAR20229.1;Name=OAR20229.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02990;product=hypothetical protein;protein_id=OAR20229.1;transl_table=11
LYPH01000055.1	Genbank	gene	75068	75679	.	-	.	ID=gene-A8144_02995;Name=A8144_02995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_02995
LYPH01000055.1	GeneMarkS+	CDS	75068	75679	.	-	0	ID=cds-OAR20230.1;Parent=gene-A8144_02995;Dbxref=NCBI_GP:OAR20230.1;Name=OAR20230.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_02995;product=hypothetical protein;protein_id=OAR20230.1;transl_table=11
LYPH01000055.1	Genbank	gene	76047	76274	.	-	.	ID=gene-A8144_03000;Name=A8144_03000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03000
LYPH01000055.1	GeneMarkS+	CDS	76047	76274	.	-	0	ID=cds-OAR20231.1;Parent=gene-A8144_03000;Dbxref=NCBI_GP:OAR20231.1;Name=OAR20231.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03000;product=hypothetical protein;protein_id=OAR20231.1;transl_table=11
LYPH01000055.1	Genbank	gene	77611	77880	.	+	.	ID=gene-A8144_03005;Name=A8144_03005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03005
LYPH01000055.1	GeneMarkS+	CDS	77611	77880	.	+	0	ID=cds-OAR20232.1;Parent=gene-A8144_03005;Dbxref=NCBI_GP:OAR20232.1;Name=OAR20232.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03005;product=hypothetical protein;protein_id=OAR20232.1;transl_table=11
LYPH01000055.1	Genbank	gene	77967	78173	.	+	.	ID=gene-A8144_03010;Name=A8144_03010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03010
LYPH01000055.1	GeneMarkS+	CDS	77967	78173	.	+	0	ID=cds-OAR20233.1;Parent=gene-A8144_03010;Dbxref=NCBI_GP:OAR20233.1;Name=OAR20233.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03010;product=hypothetical protein;protein_id=OAR20233.1;transl_table=11
LYPH01000055.1	Genbank	gene	78797	78994	.	+	.	ID=gene-A8144_03015;Name=A8144_03015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03015
LYPH01000055.1	GeneMarkS+	CDS	78797	78994	.	+	0	ID=cds-OAR20234.1;Parent=gene-A8144_03015;Dbxref=NCBI_GP:OAR20234.1;Name=OAR20234.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03015;product=hypothetical protein;protein_id=OAR20234.1;transl_table=11
LYPH01000055.1	Genbank	gene	79809	80036	.	+	.	ID=gene-A8144_03020;Name=A8144_03020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03020
LYPH01000055.1	GeneMarkS+	CDS	79809	80036	.	+	0	ID=cds-OAR20235.1;Parent=gene-A8144_03020;Dbxref=NCBI_GP:OAR20235.1;Name=OAR20235.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03020;product=hypothetical protein;protein_id=OAR20235.1;transl_table=11
LYPH01000055.1	Genbank	gene	82506	84275	.	-	.	ID=gene-A8144_03025;Name=A8144_03025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03025
LYPH01000055.1	Protein Homology	CDS	82506	84275	.	-	0	ID=cds-OAR20260.1;Parent=gene-A8144_03025;Dbxref=NCBI_GP:OAR20260.1;Name=OAR20260.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014942494.1;locus_tag=A8144_03025;product=aspartate--tRNA ligase;protein_id=OAR20260.1;transl_table=11
LYPH01000055.1	Genbank	pseudogene	84439	85009	.	+	.	ID=gene-A8144_03030;Name=A8144_03030;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03030;pseudo=true
LYPH01000055.1	Protein Homology	CDS	84439	85009	.	+	0	ID=cds-A8144_03030;Parent=gene-A8144_03030;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019306166.1;locus_tag=A8144_03030;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000055.1	Genbank	pseudogene	85099	85921	.	+	.	ID=gene-A8144_03035;Name=A8144_03035;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03035;pseudo=true
LYPH01000055.1	Protein Homology	CDS	85099	85921	.	+	0	ID=cds-A8144_03035;Parent=gene-A8144_03035;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019736770.1;locus_tag=A8144_03035;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000055.1	Genbank	gene	87126	87308	.	-	.	ID=gene-A8144_03040;Name=A8144_03040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03040
LYPH01000055.1	GeneMarkS+	CDS	87126	87308	.	-	0	ID=cds-OAR20236.1;Parent=gene-A8144_03040;Dbxref=NCBI_GP:OAR20236.1;Name=OAR20236.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03040;product=hypothetical protein;protein_id=OAR20236.1;transl_table=11
LYPH01000055.1	Genbank	gene	89191	89382	.	-	.	ID=gene-A8144_03045;Name=A8144_03045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03045
LYPH01000055.1	GeneMarkS+	CDS	89191	89382	.	-	0	ID=cds-OAR20237.1;Parent=gene-A8144_03045;Dbxref=NCBI_GP:OAR20237.1;Name=OAR20237.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03045;product=hypothetical protein;protein_id=OAR20237.1;transl_table=11
LYPH01000055.1	Genbank	gene	89508	89735	.	-	.	ID=gene-A8144_03050;Name=A8144_03050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03050
LYPH01000055.1	GeneMarkS+	CDS	89508	89735	.	-	0	ID=cds-OAR20238.1;Parent=gene-A8144_03050;Dbxref=NCBI_GP:OAR20238.1;Name=OAR20238.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03050;product=hypothetical protein;protein_id=OAR20238.1;transl_table=11
LYPH01000055.1	Genbank	gene	90091	91374	.	-	.	ID=gene-A8144_03055;Name=A8144_03055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03055
LYPH01000055.1	Protein Homology	CDS	90091	91374	.	-	0	ID=cds-OAR20239.1;Parent=gene-A8144_03055;Dbxref=NCBI_GP:OAR20239.1;Name=OAR20239.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46696.2;locus_tag=A8144_03055;product=histidine--tRNA ligase;protein_id=OAR20239.1;transl_table=11
LYPH01000055.1	Genbank	gene	91378	92034	.	-	.	ID=gene-A8144_03060;Name=A8144_03060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03060
LYPH01000055.1	Protein Homology	CDS	91378	92034	.	-	0	ID=cds-OAR20240.1;Parent=gene-A8144_03060;Dbxref=NCBI_GP:OAR20240.1;Name=OAR20240.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907756.1;locus_tag=A8144_03060;product=hypothetical protein;protein_id=OAR20240.1;transl_table=11
LYPH01000055.1	Genbank	gene	92198	93085	.	+	.	ID=gene-A8144_03065;Name=A8144_03065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03065
LYPH01000055.1	Protein Homology	CDS	92198	93085	.	+	0	ID=cds-OAR20241.1;Parent=gene-A8144_03065;Dbxref=NCBI_GP:OAR20241.1;Name=OAR20241.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46697.1;locus_tag=A8144_03065;product=peptidylprolyl isomerase;protein_id=OAR20241.1;transl_table=11
LYPH01000055.1	Genbank	gene	93144	95507	.	-	.	ID=gene-A8144_03070;Name=A8144_03070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03070
LYPH01000055.1	Protein Homology	CDS	93144	95507	.	-	0	ID=cds-OAR20261.1;Parent=gene-A8144_03070;Dbxref=NCBI_GP:OAR20261.1;Name=OAR20261.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009954371.1;locus_tag=A8144_03070;product=GTP pyrophosphokinase;protein_id=OAR20261.1;transl_table=11
LYPH01000055.1	Genbank	pseudogene	95604	96123	.	-	.	ID=gene-A8144_03075;Name=A8144_03075;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03075;pseudo=true
LYPH01000055.1	Protein Homology	CDS	95604	96123	.	-	0	ID=cds-A8144_03075;Parent=gene-A8144_03075;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009936220.1;locus_tag=A8144_03075;product=adenine phosphoribosyltransferase;pseudo=true;transl_table=11
LYPH01000055.1	Genbank	gene	96153	97820	.	-	.	ID=gene-A8144_03080;Name=A8144_03080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03080
LYPH01000055.1	Protein Homology	CDS	96153	97820	.	-	0	ID=cds-OAR20262.1;Parent=gene-A8144_03080;Dbxref=NCBI_GP:OAR20262.1;Name=OAR20262.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49646.2;locus_tag=A8144_03080;product=hypothetical protein;protein_id=OAR20262.1;transl_table=11
LYPH01000055.1	Genbank	gene	97865	99280	.	-	.	ID=gene-A8144_03085;Name=A8144_03085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03085
LYPH01000055.1	Protein Homology	CDS	97865	99280	.	-	0	ID=cds-OAR20242.1;Parent=gene-A8144_03085;Dbxref=NCBI_GP:OAR20242.1;Name=OAR20242.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P38386.2;locus_tag=A8144_03085;product=protein-export membrane protein SecF;protein_id=OAR20242.1;transl_table=11
LYPH01000055.1	Genbank	gene	99285	101000	.	-	.	ID=gene-A8144_03090;Name=A8144_03090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03090
LYPH01000055.1	Protein Homology	CDS	99285	101000	.	-	0	ID=cds-OAR20243.1;Parent=gene-A8144_03090;Dbxref=NCBI_GP:OAR20243.1;Name=OAR20243.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015355868.1;locus_tag=A8144_03090;product=protein-export membrane protein SecD;protein_id=OAR20243.1;transl_table=11
LYPH01000055.1	Genbank	gene	101118	101462	.	-	.	ID=gene-A8144_03095;Name=A8144_03095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03095
LYPH01000055.1	Protein Homology	CDS	101118	101462	.	-	0	ID=cds-OAR20244.1;Parent=gene-A8144_03095;Dbxref=NCBI_GP:OAR20244.1;Name=OAR20244.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49647.2;locus_tag=A8144_03095;product=preprotein translocase subunit YajC;protein_id=OAR20244.1;transl_table=11
LYPH01000055.1	Genbank	gene	101731	103071	.	+	.	ID=gene-A8144_03100;Name=A8144_03100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03100
LYPH01000055.1	Protein Homology	CDS	101731	103071	.	+	0	ID=cds-OAR20245.1;Parent=gene-A8144_03100;Dbxref=NCBI_GP:OAR20245.1;Name=OAR20245.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P40829.1;locus_tag=A8144_03100;product=4-aminobutyrate transaminase;protein_id=OAR20245.1;transl_table=11
LYPH01000055.1	Genbank	gene	103209	106733	.	+	.	ID=gene-A8144_03105;Name=A8144_03105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03105
LYPH01000055.1	Protein Homology	CDS	103209	106733	.	+	0	ID=cds-OAR20246.1;Parent=gene-A8144_03105;Dbxref=NCBI_GP:OAR20246.1;Name=OAR20246.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019305838.1;locus_tag=A8144_03105;product=oxidoreductase;protein_id=OAR20246.1;transl_table=11
LYPH01000055.1	Genbank	gene	107670	108719	.	-	.	ID=gene-A8144_03110;Name=A8144_03110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03110
LYPH01000055.1	Protein Homology	CDS	107670	108719	.	-	0	ID=cds-OAR20247.1;Parent=gene-A8144_03110;Dbxref=NCBI_GP:OAR20247.1;Name=OAR20247.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P40833.2;locus_tag=A8144_03110;product=Holliday junction DNA helicase RuvB;protein_id=OAR20247.1;transl_table=11
LYPH01000055.1	Genbank	gene	108716	109327	.	-	.	ID=gene-A8144_03115;Name=A8144_03115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03115
LYPH01000055.1	Protein Homology	CDS	108716	109327	.	-	0	ID=cds-OAR20248.1;Parent=gene-A8144_03115;Dbxref=NCBI_GP:OAR20248.1;Name=OAR20248.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P40832.1;locus_tag=A8144_03115;product=Holliday junction DNA helicase RuvA;protein_id=OAR20248.1;transl_table=11
LYPH01000055.1	Genbank	gene	109324	109890	.	-	.	ID=gene-A8144_03120;Name=A8144_03120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03120
LYPH01000055.1	Protein Homology	CDS	109324	109890	.	-	0	ID=cds-OAR20249.1;Parent=gene-A8144_03120;Dbxref=NCBI_GP:OAR20249.1;Name=OAR20249.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_013829310.1;locus_tag=A8144_03120;product=crossover junction endodeoxyribonuclease RuvC;protein_id=OAR20249.1;transl_table=11
LYPH01000055.1	Genbank	pseudogene	111490	111914	.	+	.	ID=gene-A8144_03125;Name=A8144_03125;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03125;pseudo=true
LYPH01000055.1	Protein Homology	CDS	111490	111914	.	+	0	ID=cds-A8144_03125;Parent=gene-A8144_03125;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014385310.1;locus_tag=A8144_03125;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000055.1	Genbank	gene	111911	112243	.	+	.	ID=gene-A8144_03130;Name=A8144_03130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03130
LYPH01000055.1	GeneMarkS+	CDS	111911	112243	.	+	0	ID=cds-OAR20250.1;Parent=gene-A8144_03130;Dbxref=NCBI_GP:OAR20250.1;Name=OAR20250.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03130;product=hypothetical protein;protein_id=OAR20250.1;transl_table=11
##sequence-region LYPH01000056.1 1 20956
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000056.1	Genbank	region	1	20956	.	+	.	ID=LYPH01000056.1:1..20956;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000056.1	Genbank	gene	73	1377	.	-	.	ID=gene-A8144_11780;Name=A8144_11780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11780
LYPH01000056.1	Protein Homology	CDS	73	1377	.	-	0	ID=cds-OAR20172.1;Parent=gene-A8144_11780;Dbxref=NCBI_GP:OAR20172.1;Name=OAR20172.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908711.1;locus_tag=A8144_11780;product=cytochrome;protein_id=OAR20172.1;transl_table=11
LYPH01000056.1	Genbank	pseudogene	1867	3820	.	-	.	ID=gene-A8144_11785;Name=A8144_11785;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11785;pseudo=true
LYPH01000056.1	Protein Homology	CDS	1867	3820	.	-	0	ID=cds-A8144_11785;Parent=gene-A8144_11785;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015292548.1;locus_tag=A8144_11785;product=2-hydroxyhepta-2%2C4-diene-1%2C7-dioate isomerase;pseudo=true;transl_table=11
LYPH01000056.1	Genbank	gene	4021	4266	.	-	.	ID=gene-A8144_11790;Name=A8144_11790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11790
LYPH01000056.1	GeneMarkS+	CDS	4021	4266	.	-	0	ID=cds-OAR20173.1;Parent=gene-A8144_11790;Dbxref=NCBI_GP:OAR20173.1;Name=OAR20173.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11790;product=hypothetical protein;protein_id=OAR20173.1;transl_table=11
LYPH01000056.1	Genbank	gene	6238	6423	.	+	.	ID=gene-A8144_11795;Name=A8144_11795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11795
LYPH01000056.1	Protein Homology	CDS	6238	6423	.	+	0	ID=cds-OAR20174.1;Parent=gene-A8144_11795;Dbxref=NCBI_GP:OAR20174.1;Name=OAR20174.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908712.1;locus_tag=A8144_11795;product=hypothetical protein;protein_id=OAR20174.1;transl_table=11
LYPH01000056.1	Genbank	pseudogene	6713	7466	.	+	.	ID=gene-A8144_11800;Name=A8144_11800;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11800;pseudo=true
LYPH01000056.1	Protein Homology	CDS	6713	7466	.	+	0	ID=cds-A8144_11800;Parent=gene-A8144_11800;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_013470917.1;locus_tag=A8144_11800;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000056.1	Genbank	gene	7660	8574	.	-	.	ID=gene-A8144_11805;Name=A8144_11805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11805
LYPH01000056.1	Protein Homology	CDS	7660	8574	.	-	0	ID=cds-OAR20175.1;Parent=gene-A8144_11805;Dbxref=NCBI_GP:OAR20175.1;Name=OAR20175.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q50097.1;locus_tag=A8144_11805;product=phosphate ABC transporter%2C permease protein PstA;protein_id=OAR20175.1;transl_table=11
LYPH01000056.1	Genbank	gene	8592	9551	.	-	.	ID=gene-A8144_11810;Name=A8144_11810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11810
LYPH01000056.1	Protein Homology	CDS	8592	9551	.	-	0	ID=cds-OAR20176.1;Parent=gene-A8144_11810;Dbxref=NCBI_GP:OAR20176.1;Name=OAR20176.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q50098.1;locus_tag=A8144_11810;product=phosphate ABC transporter permease subunit PstC;protein_id=OAR20176.1;transl_table=11
LYPH01000056.1	Genbank	gene	9594	10703	.	-	.	ID=gene-A8144_11815;Name=A8144_11815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11815
LYPH01000056.1	Protein Homology	CDS	9594	10703	.	-	0	ID=cds-OAR20177.1;Parent=gene-A8144_11815;Dbxref=NCBI_GP:OAR20177.1;Name=OAR20177.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBE5.1;locus_tag=A8144_11815;product=phosphate ABC transporter substrate-binding protein PstS;protein_id=OAR20177.1;transl_table=11
LYPH01000056.1	Genbank	gene	11045	11311	.	+	.	ID=gene-A8144_11820;Name=A8144_11820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11820
LYPH01000056.1	GeneMarkS+	CDS	11045	11311	.	+	0	ID=cds-OAR20178.1;Parent=gene-A8144_11820;Dbxref=NCBI_GP:OAR20178.1;Name=OAR20178.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11820;product=hypothetical protein;protein_id=OAR20178.1;transl_table=11
LYPH01000056.1	Genbank	gene	11620	11805	.	+	.	ID=gene-A8144_11825;Name=A8144_11825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11825
LYPH01000056.1	GeneMarkS+	CDS	11620	11805	.	+	0	ID=cds-OAR20179.1;Parent=gene-A8144_11825;Dbxref=NCBI_GP:OAR20179.1;Name=OAR20179.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11825;product=hypothetical protein;protein_id=OAR20179.1;transl_table=11
LYPH01000056.1	Genbank	pseudogene	11847	12949	.	+	.	ID=gene-A8144_11830;Name=A8144_11830;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11830;pseudo=true
LYPH01000056.1	Protein Homology	CDS	11847	12949	.	+	0	ID=cds-A8144_11830;Parent=gene-A8144_11830;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012396130.1;locus_tag=A8144_11830;product=diacylglycerol kinase;pseudo=true;transl_table=11
LYPH01000056.1	Genbank	gene	13085	14311	.	+	.	ID=gene-A8144_11835;Name=A8144_11835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11835
LYPH01000056.1	Protein Homology	CDS	13085	14311	.	+	0	ID=cds-OAR20180.1;Parent=gene-A8144_11835;Dbxref=NCBI_GP:OAR20180.1;Name=OAR20180.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008253939.1;locus_tag=A8144_11835;product=divalent metal cation transporter;protein_id=OAR20180.1;transl_table=11
LYPH01000056.1	Genbank	gene	14784	14966	.	-	.	ID=gene-A8144_11840;Name=A8144_11840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11840
LYPH01000056.1	GeneMarkS+	CDS	14784	14966	.	-	0	ID=cds-OAR20181.1;Parent=gene-A8144_11840;Dbxref=NCBI_GP:OAR20181.1;Name=OAR20181.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11840;product=hypothetical protein;protein_id=OAR20181.1;transl_table=11
LYPH01000056.1	Genbank	pseudogene	15403	15669	.	-	.	ID=gene-A8144_11845;Name=A8144_11845;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11845;pseudo=true
LYPH01000056.1	Protein Homology	CDS	15403	15669	.	-	0	ID=cds-A8144_11845;Parent=gene-A8144_11845;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015631194.1;locus_tag=A8144_11845;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000056.1	Genbank	gene	16219	16518	.	-	.	ID=gene-A8144_11850;Name=A8144_11850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11850
LYPH01000056.1	GeneMarkS+	CDS	16219	16518	.	-	0	ID=cds-OAR20182.1;Parent=gene-A8144_11850;Dbxref=NCBI_GP:OAR20182.1;Name=OAR20182.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11850;product=hypothetical protein;protein_id=OAR20182.1;transl_table=11
LYPH01000056.1	Genbank	gene	17665	17895	.	-	.	ID=gene-A8144_11855;Name=A8144_11855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11855
LYPH01000056.1	GeneMarkS+	CDS	17665	17895	.	-	0	ID=cds-OAR20183.1;Parent=gene-A8144_11855;Dbxref=NCBI_GP:OAR20183.1;Name=OAR20183.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11855;product=hypothetical protein;protein_id=OAR20183.1;transl_table=11
LYPH01000056.1	Genbank	pseudogene	18790	20016	.	-	.	ID=gene-A8144_11860;Name=A8144_11860;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11860;pseudo=true
LYPH01000056.1	Protein Homology	CDS	18790	20016	.	-	0	ID=cds-A8144_11860;Parent=gene-A8144_11860;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003900536.1;locus_tag=A8144_11860;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000056.1	Genbank	gene	19965	20312	.	-	.	ID=gene-A8144_11865;Name=A8144_11865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11865
LYPH01000056.1	GeneMarkS+	CDS	19965	20312	.	-	0	ID=cds-OAR20184.1;Parent=gene-A8144_11865;Dbxref=NCBI_GP:OAR20184.1;Name=OAR20184.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11865;product=hypothetical protein;protein_id=OAR20184.1;transl_table=11
##sequence-region LYPH01000057.1 1 20518
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000057.1	Genbank	region	1	20518	.	+	.	ID=LYPH01000057.1:1..20518;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000057.1	Genbank	pseudogene	196	1180	.	-	.	ID=gene-A8144_11870;Name=A8144_11870;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11870;pseudo=true
LYPH01000057.1	Protein Homology	CDS	196	1180	.	-	0	ID=cds-A8144_11870;Parent=gene-A8144_11870;Note=ATP-dependent carboxylate-amine ligase%3B frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014584646.1;locus_tag=A8144_11870;product=carboxylate--amine ligase;pseudo=true;transl_table=11
LYPH01000057.1	Genbank	gene	1246	1968	.	-	.	ID=gene-A8144_11875;Name=A8144_11875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11875
LYPH01000057.1	Protein Homology	CDS	1246	1968	.	-	0	ID=cds-OAR20151.1;Parent=gene-A8144_11875;Dbxref=NCBI_GP:OAR20151.1;Name=OAR20151.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBI6.1;locus_tag=A8144_11875;product=superoxide dismutase;protein_id=OAR20151.1;transl_table=11
LYPH01000057.1	Genbank	gene	2033	2470	.	-	.	ID=gene-A8144_11880;Name=A8144_11880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11880
LYPH01000057.1	Protein Homology	CDS	2033	2470	.	-	0	ID=cds-OAR20152.1;Parent=gene-A8144_11880;Dbxref=NCBI_GP:OAR20152.1;Name=OAR20152.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007167559.1;locus_tag=A8144_11880;product=hypothetical protein;protein_id=OAR20152.1;transl_table=11
LYPH01000057.1	Genbank	gene	2567	2875	.	-	.	ID=gene-A8144_11885;Name=A8144_11885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11885
LYPH01000057.1	Protein Homology	CDS	2567	2875	.	-	0	ID=cds-OAR20153.1;Parent=gene-A8144_11885;Dbxref=NCBI_GP:OAR20153.1;Name=OAR20153.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908621.1;locus_tag=A8144_11885;product=hypothetical protein;protein_id=OAR20153.1;transl_table=11
LYPH01000057.1	Genbank	gene	2906	3043	.	-	.	ID=gene-A8144_11890;Name=A8144_11890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11890
LYPH01000057.1	Protein Homology	CDS	2906	3043	.	-	0	ID=cds-OAR20154.1;Parent=gene-A8144_11890;Dbxref=NCBI_GP:OAR20154.1;Name=OAR20154.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908622.1;locus_tag=A8144_11890;product=hypothetical protein;protein_id=OAR20154.1;transl_table=11
LYPH01000057.1	Genbank	gene	3090	3683	.	+	.	ID=gene-A8144_11895;Name=A8144_11895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11895
LYPH01000057.1	Protein Homology	CDS	3090	3683	.	+	0	ID=cds-OAR20155.1;Parent=gene-A8144_11895;Dbxref=NCBI_GP:OAR20155.1;Name=OAR20155.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBI2.1;locus_tag=A8144_11895;product=peptide deformylase;protein_id=OAR20155.1;transl_table=11
LYPH01000057.1	Genbank	gene	3691	4002	.	+	.	ID=gene-A8144_11900;Name=A8144_11900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11900
LYPH01000057.1	GeneMarkS+	CDS	3691	4002	.	+	0	ID=cds-OAR20156.1;Parent=gene-A8144_11900;Dbxref=NCBI_GP:OAR20156.1;Name=OAR20156.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11900;product=hypothetical protein;protein_id=OAR20156.1;transl_table=11
LYPH01000057.1	Genbank	gene	4148	4519	.	-	.	ID=gene-A8144_11905;Name=A8144_11905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11905
LYPH01000057.1	GeneMarkS+	CDS	4148	4519	.	-	0	ID=cds-OAR20157.1;Parent=gene-A8144_11905;Dbxref=NCBI_GP:OAR20157.1;Name=OAR20157.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11905;product=hypothetical protein;protein_id=OAR20157.1;transl_table=11
LYPH01000057.1	Genbank	gene	5266	5709	.	+	.	ID=gene-A8144_11910;Name=A8144_11910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11910
LYPH01000057.1	Protein Homology	CDS	5266	5709	.	+	0	ID=cds-OAR20170.1;Parent=gene-A8144_11910;Dbxref=NCBI_GP:OAR20170.1;Name=OAR20170.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015354409.1;locus_tag=A8144_11910;product=hypothetical protein;protein_id=OAR20170.1;transl_table=11
LYPH01000057.1	Genbank	gene	5783	6115	.	+	.	ID=gene-A8144_11915;Name=A8144_11915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11915
LYPH01000057.1	GeneMarkS+	CDS	5783	6115	.	+	0	ID=cds-OAR20158.1;Parent=gene-A8144_11915;Dbxref=NCBI_GP:OAR20158.1;Name=OAR20158.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11915;product=hypothetical protein;protein_id=OAR20158.1;transl_table=11
LYPH01000057.1	Genbank	gene	7016	7255	.	+	.	ID=gene-A8144_11920;Name=A8144_11920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11920
LYPH01000057.1	GeneMarkS+	CDS	7016	7255	.	+	0	ID=cds-OAR20159.1;Parent=gene-A8144_11920;Dbxref=NCBI_GP:OAR20159.1;Name=OAR20159.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11920;product=hypothetical protein;protein_id=OAR20159.1;transl_table=11
LYPH01000057.1	Genbank	gene	9280	9564	.	-	.	ID=gene-A8144_11925;Name=A8144_11925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11925
LYPH01000057.1	GeneMarkS+	CDS	9280	9564	.	-	0	ID=cds-OAR20160.1;Parent=gene-A8144_11925;Dbxref=NCBI_GP:OAR20160.1;Name=OAR20160.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11925;product=hypothetical protein;protein_id=OAR20160.1;transl_table=11
LYPH01000057.1	Genbank	gene	10206	10454	.	+	.	ID=gene-A8144_11930;Name=A8144_11930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11930
LYPH01000057.1	GeneMarkS+	CDS	10206	10454	.	+	0	ID=cds-OAR20161.1;Parent=gene-A8144_11930;Dbxref=NCBI_GP:OAR20161.1;Name=OAR20161.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11930;product=hypothetical protein;protein_id=OAR20161.1;transl_table=11
LYPH01000057.1	Genbank	gene	10548	10811	.	-	.	ID=gene-A8144_11935;Name=A8144_11935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11935
LYPH01000057.1	GeneMarkS+	CDS	10548	10811	.	-	0	ID=cds-OAR20162.1;Parent=gene-A8144_11935;Dbxref=NCBI_GP:OAR20162.1;Name=OAR20162.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11935;product=hypothetical protein;protein_id=OAR20162.1;transl_table=11
LYPH01000057.1	Genbank	gene	11321	11569	.	-	.	ID=gene-A8144_11940;Name=A8144_11940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11940
LYPH01000057.1	GeneMarkS+	CDS	11321	11569	.	-	0	ID=cds-OAR20163.1;Parent=gene-A8144_11940;Dbxref=NCBI_GP:OAR20163.1;Name=OAR20163.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_11940;product=hypothetical protein;protein_id=OAR20163.1;transl_table=11
LYPH01000057.1	Genbank	gene	12674	13744	.	-	.	ID=gene-A8144_11945;Name=A8144_11945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11945
LYPH01000057.1	Protein Homology	CDS	12674	13744	.	-	0	ID=cds-OAR20164.1;Parent=gene-A8144_11945;Dbxref=NCBI_GP:OAR20164.1;Name=OAR20164.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908625.1;locus_tag=A8144_11945;product=redox-regulated ATPase YchF;protein_id=OAR20164.1;transl_table=11
LYPH01000057.1	Genbank	gene	13795	15027	.	+	.	ID=gene-A8144_11950;Name=A8144_11950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11950
LYPH01000057.1	Protein Homology	CDS	13795	15027	.	+	0	ID=cds-OAR20165.1;Parent=gene-A8144_11950;Dbxref=NCBI_GP:OAR20165.1;Name=OAR20165.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908626.1;locus_tag=A8144_11950;product=hypothetical protein;protein_id=OAR20165.1;transl_table=11
LYPH01000057.1	Genbank	gene	15038	16036	.	-	.	ID=gene-A8144_11955;Name=A8144_11955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11955
LYPH01000057.1	Protein Homology	CDS	15038	16036	.	-	0	ID=cds-OAR20166.1;Parent=gene-A8144_11955;Dbxref=NCBI_GP:OAR20166.1;Name=OAR20166.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9X781.2;locus_tag=A8144_11955;product=4-hydroxy-3-methylbut-2-enyl diphosphate reductase;protein_id=OAR20166.1;transl_table=11
LYPH01000057.1	Genbank	gene	16214	16831	.	+	.	ID=gene-A8144_11960;Name=A8144_11960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11960
LYPH01000057.1	Protein Homology	CDS	16214	16831	.	+	0	ID=cds-OAR20167.1;Parent=gene-A8144_11960;Dbxref=NCBI_GP:OAR20167.1;Name=OAR20167.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908628.1;locus_tag=A8144_11960;product=hypothetical protein;protein_id=OAR20167.1;transl_table=11
LYPH01000057.1	Genbank	gene	16828	18114	.	+	.	ID=gene-A8144_11965;Name=A8144_11965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11965
LYPH01000057.1	Protein Homology	CDS	16828	18114	.	+	0	ID=cds-OAR20168.1;Parent=gene-A8144_11965;Dbxref=NCBI_GP:OAR20168.1;Name=OAR20168.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9X783.1;locus_tag=A8144_11965;product=exodeoxyribonuclease VII large subunit;protein_id=OAR20168.1;transl_table=11
LYPH01000057.1	Genbank	gene	18104	18367	.	+	.	ID=gene-A8144_11970;Name=A8144_11970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11970
LYPH01000057.1	Protein Homology	CDS	18104	18367	.	+	0	ID=cds-OAR20171.1;Parent=gene-A8144_11970;Dbxref=NCBI_GP:OAR20171.1;Name=OAR20171.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908630.1;locus_tag=A8144_11970;product=exodeoxyribonuclease VII small subunit;protein_id=OAR20171.1;transl_table=11
LYPH01000057.1	Genbank	gene	18418	19548	.	+	.	ID=gene-A8144_11975;Name=A8144_11975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11975
LYPH01000057.1	Protein Homology	CDS	18418	19548	.	+	0	ID=cds-OAR20169.1;Parent=gene-A8144_11975;Dbxref=NCBI_GP:OAR20169.1;Name=OAR20169.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908631.1;locus_tag=A8144_11975;product=steroid delta-isomerase;protein_id=OAR20169.1;transl_table=11
##sequence-region LYPH01000058.1 1 20341
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000058.1	Genbank	region	1	20341	.	+	.	ID=LYPH01000058.1:1..20341;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000058.1	Genbank	gene	138	983	.	-	.	ID=gene-A8144_11980;Name=A8144_11980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11980
LYPH01000058.1	Protein Homology	CDS	138	983	.	-	0	ID=cds-OAR20133.1;Parent=gene-A8144_11980;Dbxref=NCBI_GP:OAR20133.1;Name=OAR20133.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907590.1;locus_tag=A8144_11980;product=16S rRNA (cytidine(1402)-2'-O)-methyltransferase;protein_id=OAR20133.1;transl_table=11
LYPH01000058.1	Genbank	gene	1008	2594	.	+	.	ID=gene-A8144_11985;Name=A8144_11985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11985
LYPH01000058.1	Protein Homology	CDS	1008	2594	.	+	0	ID=cds-OAR20134.1;Parent=gene-A8144_11985;Dbxref=NCBI_GP:OAR20134.1;Name=OAR20134.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009975266.1;locus_tag=A8144_11985;product=dolichyl-phosphate-mannose--protein mannosyltransferase;protein_id=OAR20134.1;transl_table=11
LYPH01000058.1	Genbank	gene	3887	4504	.	+	.	ID=gene-A8144_11990;Name=A8144_11990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_11990
LYPH01000058.1	Protein Homology	CDS	3887	4504	.	+	0	ID=cds-OAR20135.1;Parent=gene-A8144_11990;Dbxref=NCBI_GP:OAR20135.1;Name=OAR20135.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907588.1;locus_tag=A8144_11990;product=DNA repair protein;protein_id=OAR20135.1;transl_table=11
LYPH01000058.1	Genbank	pseudogene	4531	5193	.	-	.	ID=gene-A8144_11995;Name=A8144_11995;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_11995;pseudo=true
LYPH01000058.1	Protein Homology	CDS	4531	5193	.	-	0	ID=cds-A8144_11995;Parent=gene-A8144_11995;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003872786.1;locus_tag=A8144_11995;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000058.1	Genbank	pseudogene	5259	5866	.	-	.	ID=gene-A8144_12000;Name=A8144_12000;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_12000;pseudo=true
LYPH01000058.1	Protein Homology	CDS	5259	5866	.	-	0	ID=cds-A8144_12000;Parent=gene-A8144_12000;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003872787.1;locus_tag=A8144_12000;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000058.1	Genbank	gene	5910	6971	.	-	.	ID=gene-A8144_12005;Name=A8144_12005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12005
LYPH01000058.1	Protein Homology	CDS	5910	6971	.	-	0	ID=cds-OAR20136.1;Parent=gene-A8144_12005;Dbxref=NCBI_GP:OAR20136.1;Name=OAR20136.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907586.1;locus_tag=A8144_12005;product=acetyltransferase;protein_id=OAR20136.1;transl_table=11
LYPH01000058.1	Genbank	gene	7245	7595	.	+	.	ID=gene-A8144_12010;Name=A8144_12010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12010
LYPH01000058.1	GeneMarkS+	CDS	7245	7595	.	+	0	ID=cds-OAR20137.1;Parent=gene-A8144_12010;Dbxref=NCBI_GP:OAR20137.1;Name=OAR20137.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12010;product=hypothetical protein;protein_id=OAR20137.1;transl_table=11
LYPH01000058.1	Genbank	gene	8252	8324	.	-	.	ID=gene-A8144_12015;Name=A8144_12015;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_12015
LYPH01000058.1	tRNAscan-SE	tRNA	8252	8324	.	-	.	ID=rna-A8144_12015;Parent=gene-A8144_12015;anticodon=(pos:complement(8289..8291));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_12015;product=tRNA-Ala
LYPH01000058.1	tRNAscan-SE	exon	8252	8324	.	-	.	ID=exon-A8144_12015-1;Parent=rna-A8144_12015;anticodon=(pos:complement(8289..8291));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_12015;product=tRNA-Ala
LYPH01000058.1	Genbank	gene	8380	9408	.	-	.	ID=gene-A8144_12020;Name=A8144_12020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12020
LYPH01000058.1	Protein Homology	CDS	8380	9408	.	-	0	ID=cds-OAR20138.1;Parent=gene-A8144_12020;Dbxref=NCBI_GP:OAR20138.1;Name=OAR20138.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907585.1;locus_tag=A8144_12020;product=hypothetical protein;protein_id=OAR20138.1;transl_table=11
LYPH01000058.1	Genbank	gene	9578	10231	.	-	.	ID=gene-A8144_12025;Name=A8144_12025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12025
LYPH01000058.1	Protein Homology	CDS	9578	10231	.	-	0	ID=cds-OAR20139.1;Parent=gene-A8144_12025;Dbxref=NCBI_GP:OAR20139.1;Name=OAR20139.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010949026.1;locus_tag=A8144_12025;product=GCN5 family acetyltransferase;protein_id=OAR20139.1;transl_table=11
LYPH01000058.1	Genbank	gene	10253	11527	.	-	.	ID=gene-A8144_12030;Name=A8144_12030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12030
LYPH01000058.1	Protein Homology	CDS	10253	11527	.	-	0	ID=cds-OAR20140.1;Parent=gene-A8144_12030;Dbxref=NCBI_GP:OAR20140.1;Name=OAR20140.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014941349.1;locus_tag=A8144_12030;product=molybdopterin molybdenumtransferase;protein_id=OAR20140.1;transl_table=11
LYPH01000058.1	Genbank	gene	11615	12535	.	-	.	ID=gene-A8144_12035;Name=A8144_12035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12035
LYPH01000058.1	Protein Homology	CDS	11615	12535	.	-	0	ID=cds-OAR20141.1;Parent=gene-A8144_12035;Dbxref=NCBI_GP:OAR20141.1;Name=OAR20141.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907582.1;locus_tag=A8144_12035;product=UDP-glucose pyrophosphorylase;protein_id=OAR20141.1;transl_table=11
LYPH01000058.1	Genbank	gene	12613	13206	.	+	.	ID=gene-A8144_12040;Name=A8144_12040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12040
LYPH01000058.1	Protein Homology	CDS	12613	13206	.	+	0	ID=cds-OAR20142.1;Parent=gene-A8144_12040;Dbxref=NCBI_GP:OAR20142.1;Name=OAR20142.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907581.1;locus_tag=A8144_12040;product=5-formyltetrahydrofolate cyclo-ligase;protein_id=OAR20142.1;transl_table=11
LYPH01000058.1	Genbank	gene	13281	13580	.	+	.	ID=gene-A8144_12045;Name=A8144_12045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12045
LYPH01000058.1	Protein Homology	CDS	13281	13580	.	+	0	ID=cds-OAR20147.1;Parent=gene-A8144_12045;Dbxref=NCBI_GP:OAR20147.1;Name=OAR20147.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907580.1;locus_tag=A8144_12045;product=FmdB family transcriptional regulator;protein_id=OAR20147.1;transl_table=11
LYPH01000058.1	Genbank	pseudogene	13687	14287	.	+	.	ID=gene-A8144_12050;Name=A8144_12050;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_12050;pseudo=true
LYPH01000058.1	Protein Homology	CDS	13687	14287	.	+	0	ID=cds-A8144_12050;Parent=gene-A8144_12050;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009957807.1;locus_tag=A8144_12050;product=flagellar biosynthesis protein FlgA;pseudo=true;transl_table=11
LYPH01000058.1	Genbank	gene	14378	14842	.	+	.	ID=gene-A8144_12055;Name=A8144_12055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12055
LYPH01000058.1	Protein Homology	CDS	14378	14842	.	+	0	ID=cds-OAR20143.1;Parent=gene-A8144_12055;Dbxref=NCBI_GP:OAR20143.1;Name=OAR20143.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9Z5G4.1;locus_tag=A8144_12055;product=large-conductance mechanosensitive channel;protein_id=OAR20143.1;transl_table=11
LYPH01000058.1	Genbank	gene	14859	15356	.	-	.	ID=gene-A8144_12060;Name=A8144_12060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12060
LYPH01000058.1	Protein Homology	CDS	14859	15356	.	-	0	ID=cds-OAR20148.1;Parent=gene-A8144_12060;Dbxref=NCBI_GP:OAR20148.1;Name=OAR20148.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008254072.1;locus_tag=A8144_12060;product=molybdenum cofactor biosynthesis protein;protein_id=OAR20148.1;transl_table=11
LYPH01000058.1	Genbank	gene	15427	16575	.	-	.	ID=gene-A8144_12065;Name=A8144_12065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12065
LYPH01000058.1	Protein Homology	CDS	15427	16575	.	-	0	ID=cds-OAR20149.1;Parent=gene-A8144_12065;Dbxref=NCBI_GP:OAR20149.1;Name=OAR20149.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907577.1;locus_tag=A8144_12065;product=serine protease;protein_id=OAR20149.1;transl_table=11
LYPH01000058.1	Genbank	gene	16853	18412	.	-	.	ID=gene-A8144_12070;Name=A8144_12070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12070
LYPH01000058.1	Protein Homology	CDS	16853	18412	.	-	0	ID=cds-OAR20144.1;Parent=gene-A8144_12070;Dbxref=NCBI_GP:OAR20144.1;Name=OAR20144.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009975239.1;locus_tag=A8144_12070;product=two-component sensor histidine kinase;protein_id=OAR20144.1;transl_table=11
LYPH01000058.1	Genbank	gene	18412	19098	.	-	.	ID=gene-A8144_12075;Name=A8144_12075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12075
LYPH01000058.1	Protein Homology	CDS	18412	19098	.	-	0	ID=cds-OAR20150.1;Parent=gene-A8144_12075;Dbxref=NCBI_GP:OAR20150.1;Name=OAR20150.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014588181.1;locus_tag=A8144_12075;product=DNA-binding response regulator;protein_id=OAR20150.1;transl_table=11
LYPH01000058.1	Genbank	gene	19219	19392	.	-	.	ID=gene-A8144_12080;Name=A8144_12080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12080
LYPH01000058.1	Protein Homology	CDS	19219	19392	.	-	0	ID=cds-OAR20145.1;Parent=gene-A8144_12080;Dbxref=NCBI_GP:OAR20145.1;Name=OAR20145.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:A4T6T4.1;locus_tag=A8144_12080;product=50S ribosomal protein L32;protein_id=OAR20145.1;transl_table=11
LYPH01000058.1	Genbank	gene	19714	20007	.	-	.	ID=gene-A8144_12085;Name=A8144_12085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12085
LYPH01000058.1	GeneMarkS+	CDS	19714	20007	.	-	0	ID=cds-OAR20146.1;Parent=gene-A8144_12085;Dbxref=NCBI_GP:OAR20146.1;Name=OAR20146.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12085;product=hypothetical protein;protein_id=OAR20146.1;transl_table=11
##sequence-region LYPH01000059.1 1 19843
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000059.1	Genbank	region	1	19843	.	+	.	ID=LYPH01000059.1:1..19843;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000059.1	Genbank	gene	2358	2663	.	-	.	ID=gene-A8144_12090;Name=A8144_12090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12090
LYPH01000059.1	GeneMarkS+	CDS	2358	2663	.	-	0	ID=cds-OAR20115.1;Parent=gene-A8144_12090;Dbxref=NCBI_GP:OAR20115.1;Name=OAR20115.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12090;product=hypothetical protein;protein_id=OAR20115.1;transl_table=11
LYPH01000059.1	Genbank	gene	2875	3054	.	-	.	ID=gene-A8144_12095;Name=A8144_12095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12095
LYPH01000059.1	GeneMarkS+	CDS	2875	3054	.	-	0	ID=cds-OAR20116.1;Parent=gene-A8144_12095;Dbxref=NCBI_GP:OAR20116.1;Name=OAR20116.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12095;product=hypothetical protein;protein_id=OAR20116.1;transl_table=11
LYPH01000059.1	Genbank	gene	3135	3707	.	-	.	ID=gene-A8144_12100;Name=A8144_12100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12100
LYPH01000059.1	GeneMarkS+	CDS	3135	3707	.	-	0	ID=cds-OAR20117.1;Parent=gene-A8144_12100;Dbxref=NCBI_GP:OAR20117.1;Name=OAR20117.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12100;product=hypothetical protein;protein_id=OAR20117.1;transl_table=11
LYPH01000059.1	Genbank	gene	3667	4677	.	-	.	ID=gene-A8144_12105;Name=A8144_12105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12105
LYPH01000059.1	Protein Homology	CDS	3667	4677	.	-	0	ID=cds-OAR20118.1;Parent=gene-A8144_12105;Dbxref=NCBI_GP:OAR20118.1;Name=OAR20118.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003910117.1;locus_tag=A8144_12105;product=glucose-6-phosphate dehydrogenase (coenzyme-F420);protein_id=OAR20118.1;transl_table=11
LYPH01000059.1	Genbank	gene	4765	5520	.	+	.	ID=gene-A8144_12110;Name=A8144_12110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12110
LYPH01000059.1	Protein Homology	CDS	4765	5520	.	+	0	ID=cds-OAR20119.1;Parent=gene-A8144_12110;Dbxref=NCBI_GP:OAR20119.1;Name=OAR20119.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907640.1;locus_tag=A8144_12110;product=MBL fold metallo-hydrolase;protein_id=OAR20119.1;transl_table=11
LYPH01000059.1	Genbank	gene	5509	5880	.	-	.	ID=gene-A8144_12115;Name=A8144_12115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12115
LYPH01000059.1	Protein Homology	CDS	5509	5880	.	-	0	ID=cds-OAR20120.1;Parent=gene-A8144_12115;Dbxref=NCBI_GP:OAR20120.1;Name=OAR20120.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907641.1;locus_tag=A8144_12115;product=hypothetical protein;protein_id=OAR20120.1;transl_table=11
LYPH01000059.1	Genbank	gene	8217	9437	.	-	.	ID=gene-A8144_12120;Name=A8144_12120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12120
LYPH01000059.1	Protein Homology	CDS	8217	9437	.	-	0	ID=cds-OAR20131.1;Parent=gene-A8144_12120;Dbxref=NCBI_GP:OAR20131.1;Name=OAR20131.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007768544.1;locus_tag=A8144_12120;product=O-succinylhomoserine sulfhydrylase;protein_id=OAR20131.1;transl_table=11
LYPH01000059.1	Genbank	gene	9494	9937	.	-	.	ID=gene-A8144_12125;Name=A8144_12125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12125
LYPH01000059.1	Protein Homology	CDS	9494	9937	.	-	0	ID=cds-OAR20121.1;Parent=gene-A8144_12125;Dbxref=NCBI_GP:OAR20121.1;Name=OAR20121.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907643.1;locus_tag=A8144_12125;product=sulfurtransferase;protein_id=OAR20121.1;transl_table=11
LYPH01000059.1	Genbank	gene	11028	11288	.	-	.	ID=gene-A8144_12130;Name=A8144_12130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12130
LYPH01000059.1	GeneMarkS+	CDS	11028	11288	.	-	0	ID=cds-OAR20122.1;Parent=gene-A8144_12130;Dbxref=NCBI_GP:OAR20122.1;Name=OAR20122.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12130;product=hypothetical protein;protein_id=OAR20122.1;transl_table=11
LYPH01000059.1	Genbank	gene	11669	11977	.	+	.	ID=gene-A8144_12135;Name=A8144_12135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12135
LYPH01000059.1	GeneMarkS+	CDS	11669	11977	.	+	0	ID=cds-OAR20123.1;Parent=gene-A8144_12135;Dbxref=NCBI_GP:OAR20123.1;Name=OAR20123.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12135;product=hypothetical protein;protein_id=OAR20123.1;transl_table=11
LYPH01000059.1	Genbank	gene	11957	12637	.	-	.	ID=gene-A8144_12140;Name=A8144_12140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12140
LYPH01000059.1	Protein Homology	CDS	11957	12637	.	-	0	ID=cds-OAR20124.1;Parent=gene-A8144_12140;Dbxref=NCBI_GP:OAR20124.1;Name=OAR20124.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003401827.1;locus_tag=A8144_12140;product=thioesterase;protein_id=OAR20124.1;transl_table=11
LYPH01000059.1	Genbank	gene	12610	13908	.	-	.	ID=gene-A8144_12145;Name=A8144_12145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12145
LYPH01000059.1	Protein Homology	CDS	12610	13908	.	-	0	ID=cds-OAR20125.1;Parent=gene-A8144_12145;Dbxref=NCBI_GP:OAR20125.1;Name=OAR20125.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O69595.1;locus_tag=A8144_12145;product=adenylosuccinate synthase;protein_id=OAR20125.1;transl_table=11
LYPH01000059.1	Genbank	gene	14092	14781	.	+	.	ID=gene-A8144_12150;Name=A8144_12150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12150
LYPH01000059.1	Protein Homology	CDS	14092	14781	.	+	0	ID=cds-OAR20126.1;Parent=gene-A8144_12150;Dbxref=NCBI_GP:OAR20126.1;Name=OAR20126.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907646.1;locus_tag=A8144_12150;product=peptidase M50;protein_id=OAR20126.1;transl_table=11
LYPH01000059.1	Genbank	pseudogene	14788	15572	.	+	.	ID=gene-A8144_12155;Name=A8144_12155;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_12155;pseudo=true
LYPH01000059.1	Protein Homology	CDS	14788	15572	.	+	0	ID=cds-A8144_12155;Parent=gene-A8144_12155;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008261482.1;locus_tag=A8144_12155;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000059.1	Genbank	gene	15576	16382	.	+	.	ID=gene-A8144_12160;Name=A8144_12160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12160
LYPH01000059.1	Protein Homology	CDS	15576	16382	.	+	0	ID=cds-OAR20127.1;Parent=gene-A8144_12160;Dbxref=NCBI_GP:OAR20127.1;Name=OAR20127.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907647.1;locus_tag=A8144_12160;product=metal transporter;protein_id=OAR20127.1;transl_table=11
LYPH01000059.1	Genbank	gene	16520	16933	.	-	.	ID=gene-A8144_12165;Name=A8144_12165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12165
LYPH01000059.1	Protein Homology	CDS	16520	16933	.	-	0	ID=cds-OAR20132.1;Parent=gene-A8144_12165;Dbxref=NCBI_GP:OAR20132.1;Name=OAR20132.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003888051.1;locus_tag=A8144_12165;product=hypothetical protein;protein_id=OAR20132.1;transl_table=11
LYPH01000059.1	Genbank	gene	17045	17923	.	+	.	ID=gene-A8144_12170;Name=A8144_12170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12170
LYPH01000059.1	Protein Homology	CDS	17045	17923	.	+	0	ID=cds-OAR20128.1;Parent=gene-A8144_12170;Dbxref=NCBI_GP:OAR20128.1;Name=OAR20128.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907649.1;locus_tag=A8144_12170;product=hypothetical protein;protein_id=OAR20128.1;transl_table=11
LYPH01000059.1	Genbank	gene	17939	18976	.	-	.	ID=gene-A8144_12175;Name=A8144_12175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12175
LYPH01000059.1	Protein Homology	CDS	17939	18976	.	-	0	ID=cds-OAR20129.1;Parent=gene-A8144_12175;Dbxref=NCBI_GP:OAR20129.1;Name=OAR20129.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O69600.1;locus_tag=A8144_12175;product=class II fructose-bisphosphate aldolase;protein_id=OAR20129.1;transl_table=11
LYPH01000059.1	Genbank	gene	19109	19777	.	+	.	ID=gene-A8144_12180;Name=A8144_12180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12180
LYPH01000059.1	Protein Homology	CDS	19109	19777	.	+	0	ID=cds-OAR20130.1;Parent=gene-A8144_12180;Dbxref=NCBI_GP:OAR20130.1;Name=OAR20130.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O69601.1;locus_tag=A8144_12180;product=hypothetical protein;protein_id=OAR20130.1;transl_table=11
##sequence-region LYPH01000060.1 1 19747
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000060.1	Genbank	region	1	19747	.	+	.	ID=LYPH01000060.1:1..19747;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000060.1	Genbank	gene	107	598	.	-	.	ID=gene-A8144_12185;Name=A8144_12185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12185
LYPH01000060.1	Protein Homology	CDS	107	598	.	-	0	ID=cds-OAR20104.1;Parent=gene-A8144_12185;Dbxref=NCBI_GP:OAR20104.1;Name=OAR20104.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908226.1;locus_tag=A8144_12185;product=DUF5130 domain-containing protein;protein_id=OAR20104.1;transl_table=11
LYPH01000060.1	Genbank	gene	1013	1660	.	-	.	ID=gene-A8144_12190;Name=A8144_12190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12190
LYPH01000060.1	Protein Homology	CDS	1013	1660	.	-	0	ID=cds-OAR20113.1;Parent=gene-A8144_12190;Dbxref=NCBI_GP:OAR20113.1;Name=OAR20113.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003875839.1;locus_tag=A8144_12190;product=endonuclease;protein_id=OAR20113.1;transl_table=11
LYPH01000060.1	Genbank	gene	1820	2215	.	+	.	ID=gene-A8144_12195;Name=A8144_12195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12195
LYPH01000060.1	Protein Homology	CDS	1820	2215	.	+	0	ID=cds-OAR20114.1;Parent=gene-A8144_12195;Dbxref=NCBI_GP:OAR20114.1;Name=OAR20114.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008255158.1;locus_tag=A8144_12195;product=hypothetical protein;protein_id=OAR20114.1;transl_table=11
LYPH01000060.1	Genbank	pseudogene	2215	3593	.	+	.	ID=gene-A8144_12200;Name=A8144_12200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_12200;pseudo=true
LYPH01000060.1	Protein Homology	CDS	2215	3593	.	+	0	ID=cds-A8144_12200;Parent=gene-A8144_12200;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003879946.1;locus_tag=A8144_12200;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000060.1	Genbank	gene	4179	4499	.	-	.	ID=gene-A8144_12205;Name=A8144_12205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12205
LYPH01000060.1	GeneMarkS+	CDS	4179	4499	.	-	0	ID=cds-OAR20105.1;Parent=gene-A8144_12205;Dbxref=NCBI_GP:OAR20105.1;Name=OAR20105.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12205;product=hypothetical protein;protein_id=OAR20105.1;transl_table=11
LYPH01000060.1	Genbank	gene	4599	9467	.	-	.	ID=gene-A8144_12210;Name=A8144_12210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12210
LYPH01000060.1	Protein Homology	CDS	4599	9467	.	-	0	ID=cds-OAR20106.1;Parent=gene-A8144_12210;Dbxref=NCBI_GP:OAR20106.1;Name=OAR20106.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908223.1;locus_tag=A8144_12210;product=NAD-glutamate dehydrogenase;protein_id=OAR20106.1;transl_table=11
LYPH01000060.1	Genbank	gene	9526	11196	.	-	.	ID=gene-A8144_12215;Name=A8144_12215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12215
LYPH01000060.1	Protein Homology	CDS	9526	11196	.	-	0	ID=cds-OAR20107.1;Parent=gene-A8144_12215;Dbxref=NCBI_GP:OAR20107.1;Name=OAR20107.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008255146.1;locus_tag=A8144_12215;product=energy-dependent translational throttle protein EttA;protein_id=OAR20107.1;transl_table=11
LYPH01000060.1	Genbank	gene	12014	14341	.	-	.	ID=gene-A8144_12220;Name=A8144_12220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12220
LYPH01000060.1	Protein Homology	CDS	12014	14341	.	-	0	ID=cds-OAR20108.1;Parent=gene-A8144_12220;Dbxref=NCBI_GP:OAR20108.1;Name=OAR20108.1;Note=PlsB%3B catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003877436.1;locus_tag=A8144_12220;product=glycerol-3-phosphate acyltransferase;protein_id=OAR20108.1;transl_table=11
LYPH01000060.1	Genbank	gene	14338	16077	.	-	.	ID=gene-A8144_12225;Name=A8144_12225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12225
LYPH01000060.1	Protein Homology	CDS	14338	16077	.	-	0	ID=cds-OAR20109.1;Parent=gene-A8144_12225;Dbxref=NCBI_GP:OAR20109.1;Name=OAR20109.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908220.1;locus_tag=A8144_12225;product=transferase;protein_id=OAR20109.1;transl_table=11
LYPH01000060.1	Genbank	gene	16074	17549	.	-	.	ID=gene-A8144_12230;Name=A8144_12230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12230
LYPH01000060.1	Protein Homology	CDS	16074	17549	.	-	0	ID=cds-OAR20110.1;Parent=gene-A8144_12230;Dbxref=NCBI_GP:OAR20110.1;Name=OAR20110.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908219.1;locus_tag=A8144_12230;product=diacylglycerol O-acyltransferase;protein_id=OAR20110.1;transl_table=11
LYPH01000060.1	Genbank	gene	17772	18233	.	-	.	ID=gene-A8144_12235;Name=A8144_12235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12235
LYPH01000060.1	Protein Homology	CDS	17772	18233	.	-	0	ID=cds-OAR20111.1;Parent=gene-A8144_12235;Dbxref=NCBI_GP:OAR20111.1;Name=OAR20111.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908218.1;locus_tag=A8144_12235;product=hypothetical protein;protein_id=OAR20111.1;transl_table=11
LYPH01000060.1	Genbank	gene	18845	18918	.	+	.	ID=gene-A8144_12240;Name=A8144_12240;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_12240
LYPH01000060.1	tRNAscan-SE	tRNA	18845	18918	.	+	.	ID=rna-A8144_12240;Parent=gene-A8144_12240;anticodon=(pos:18879..18881);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_12240;product=tRNA-Arg
LYPH01000060.1	tRNAscan-SE	exon	18845	18918	.	+	.	ID=exon-A8144_12240-1;Parent=rna-A8144_12240;anticodon=(pos:18879..18881);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_12240;product=tRNA-Arg
LYPH01000060.1	Genbank	gene	19232	19558	.	+	.	ID=gene-A8144_12245;Name=A8144_12245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12245
LYPH01000060.1	GeneMarkS+	CDS	19232	19558	.	+	0	ID=cds-OAR20112.1;Parent=gene-A8144_12245;Dbxref=NCBI_GP:OAR20112.1;Name=OAR20112.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12245;product=hypothetical protein;protein_id=OAR20112.1;transl_table=11
##sequence-region LYPH01000061.1 1 19591
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000061.1	Genbank	region	1	19591	.	+	.	ID=LYPH01000061.1:1..19591;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000061.1	Genbank	pseudogene	330	1298	.	-	.	ID=gene-A8144_12250;Name=A8144_12250;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_12250;pseudo=true
LYPH01000061.1	Protein Homology	CDS	330	1298	.	-	0	ID=cds-A8144_12250;Parent=gene-A8144_12250;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011599898.1;locus_tag=A8144_12250;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000061.1	Genbank	gene	1582	1785	.	-	.	ID=gene-A8144_12255;Name=A8144_12255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12255
LYPH01000061.1	GeneMarkS+	CDS	1582	1785	.	-	0	ID=cds-OAR20090.1;Parent=gene-A8144_12255;Dbxref=NCBI_GP:OAR20090.1;Name=OAR20090.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12255;product=hypothetical protein;protein_id=OAR20090.1;transl_table=11
LYPH01000061.1	Genbank	gene	2049	2255	.	-	.	ID=gene-A8144_12260;Name=A8144_12260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12260
LYPH01000061.1	GeneMarkS+	CDS	2049	2255	.	-	0	ID=cds-OAR20091.1;Parent=gene-A8144_12260;Dbxref=NCBI_GP:OAR20091.1;Name=OAR20091.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12260;product=hypothetical protein;protein_id=OAR20091.1;transl_table=11
LYPH01000061.1	Genbank	pseudogene	2819	3975	.	-	.	ID=gene-A8144_12265;Name=A8144_12265;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_12265;pseudo=true
LYPH01000061.1	Protein Homology	CDS	2819	3975	.	-	0	ID=cds-A8144_12265;Parent=gene-A8144_12265;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009953361.1;locus_tag=A8144_12265;product=dipeptidase;pseudo=true;transl_table=11
LYPH01000061.1	Genbank	pseudogene	4011	4926	.	+	.	ID=gene-A8144_12270;Name=A8144_12270;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_12270;pseudo=true
LYPH01000061.1	Protein Homology	CDS	4011	4926	.	+	0	ID=cds-A8144_12270;Parent=gene-A8144_12270;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011740309.1;locus_tag=A8144_12270;product=5'-3' exonuclease;pseudo=true;transl_table=11
LYPH01000061.1	Genbank	pseudogene	4974	5784	.	-	.	ID=gene-A8144_12275;Name=A8144_12275;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_12275;pseudo=true
LYPH01000061.1	Protein Homology	CDS	4974	5784	.	-	0	ID=cds-A8144_12275;Parent=gene-A8144_12275;Note=frameshifted%3B too many ambiguous residues;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012394764.1;locus_tag=A8144_12275;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000061.1	Genbank	gene	5849	8611	.	-	.	ID=gene-A8144_12280;Name=A8144_12280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12280
LYPH01000061.1	Protein Homology	CDS	5849	8611	.	-	0	ID=cds-OAR20092.1;Parent=gene-A8144_12280;Dbxref=NCBI_GP:OAR20092.1;Name=OAR20092.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9ZBD8.1;locus_tag=A8144_12280;product=DEAD/DEAH box helicase;protein_id=OAR20092.1;transl_table=11
LYPH01000061.1	Genbank	gene	8636	9496	.	-	.	ID=gene-A8144_12285;Name=A8144_12285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12285
LYPH01000061.1	Protein Homology	CDS	8636	9496	.	-	0	ID=cds-OAR20093.1;Parent=gene-A8144_12285;Dbxref=NCBI_GP:OAR20093.1;Name=OAR20093.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908277.1;locus_tag=A8144_12285;product=twin arginine-targeting protein translocase TatC;protein_id=OAR20093.1;transl_table=11
LYPH01000061.1	Genbank	gene	9635	9901	.	-	.	ID=gene-A8144_12290;Name=tatA;gbkey=Gene;gene=tatA;gene_biotype=protein_coding;locus_tag=A8144_12290
LYPH01000061.1	Protein Homology	CDS	9635	9901	.	-	0	ID=cds-OAR20102.1;Parent=gene-A8144_12290;Dbxref=NCBI_GP:OAR20102.1;Name=OAR20102.1;Note=TatA%3B similar to TatE that is found in some proteobacteria%3B part of system that translocates proteins with a conserved twin arginine motif across the inner membrane%3B capable of translocating folded substrates typically those with bound cofactors%3B similar to a protein import system in thylakoid membranes;gbkey=CDS;gene=tatA;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008256319.1;locus_tag=A8144_12290;product=preprotein translocase subunit SecA;protein_id=OAR20102.1;transl_table=11
LYPH01000061.1	Genbank	gene	9974	10948	.	-	.	ID=gene-A8144_12295;Name=A8144_12295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12295
LYPH01000061.1	Protein Homology	CDS	9974	10948	.	-	0	ID=cds-OAR20094.1;Parent=gene-A8144_12295;Dbxref=NCBI_GP:OAR20094.1;Name=OAR20094.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P54075.2;locus_tag=A8144_12295;product=protein pafC;protein_id=OAR20094.1;transl_table=11
LYPH01000061.1	Genbank	gene	10945	11940	.	-	.	ID=gene-A8144_12300;Name=A8144_12300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12300
LYPH01000061.1	Protein Homology	CDS	10945	11940	.	-	0	ID=cds-OAR20095.1;Parent=gene-A8144_12300;Dbxref=NCBI_GP:OAR20095.1;Name=OAR20095.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P54076.1;locus_tag=A8144_12300;product=WYL domain-containing protein;protein_id=OAR20095.1;transl_table=11
LYPH01000061.1	Genbank	gene	11947	13290	.	-	.	ID=gene-A8144_12305;Name=A8144_12305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12305
LYPH01000061.1	Protein Homology	CDS	11947	13290	.	-	0	ID=cds-OAR20103.1;Parent=gene-A8144_12305;Dbxref=NCBI_GP:OAR20103.1;Name=OAR20103.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008716320.1;locus_tag=A8144_12305;product=Pup--protein ligase;protein_id=OAR20103.1;transl_table=11
LYPH01000061.1	Genbank	gene	13785	14039	.	-	.	ID=gene-A8144_12310;Name=A8144_12310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12310
LYPH01000061.1	GeneMarkS+	CDS	13785	14039	.	-	0	ID=cds-OAR20096.1;Parent=gene-A8144_12310;Dbxref=NCBI_GP:OAR20096.1;Name=OAR20096.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12310;product=hypothetical protein;protein_id=OAR20096.1;transl_table=11
LYPH01000061.1	Genbank	gene	15325	15633	.	-	.	ID=gene-A8144_12315;Name=A8144_12315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12315
LYPH01000061.1	GeneMarkS+	CDS	15325	15633	.	-	0	ID=cds-OAR20097.1;Parent=gene-A8144_12315;Dbxref=NCBI_GP:OAR20097.1;Name=OAR20097.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12315;product=hypothetical protein;protein_id=OAR20097.1;transl_table=11
LYPH01000061.1	Genbank	gene	15756	16553	.	-	.	ID=gene-A8144_12320;Name=A8144_12320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12320
LYPH01000061.1	Protein Homology	CDS	15756	16553	.	-	0	ID=cds-OAR20098.1;Parent=gene-A8144_12320;Dbxref=NCBI_GP:OAR20098.1;Name=OAR20098.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9S375.1;locus_tag=A8144_12320;product=proteasome subunit alpha;protein_id=OAR20098.1;transl_table=11
LYPH01000061.1	Genbank	gene	16550	17425	.	-	.	ID=gene-A8144_12325;Name=A8144_12325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12325
LYPH01000061.1	Protein Homology	CDS	16550	17425	.	-	0	ID=cds-OAR20099.1;Parent=gene-A8144_12325;Dbxref=NCBI_GP:OAR20099.1;Name=OAR20099.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49780.1;locus_tag=A8144_12325;product=proteasome subunit beta;protein_id=OAR20099.1;transl_table=11
LYPH01000061.1	Genbank	gene	17422	17613	.	-	.	ID=gene-A8144_12330;Name=A8144_12330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12330
LYPH01000061.1	Protein Homology	CDS	17422	17613	.	-	0	ID=cds-OAR20100.1;Parent=gene-A8144_12330;Dbxref=NCBI_GP:OAR20100.1;Name=OAR20100.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003887572.1;locus_tag=A8144_12330;product=ubiquitin-like protein Pup;protein_id=OAR20100.1;transl_table=11
LYPH01000061.1	Genbank	gene	17645	19189	.	-	.	ID=gene-A8144_12335;Name=A8144_12335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12335
LYPH01000061.1	Protein Homology	CDS	17645	19189	.	-	0	ID=cds-OAR20101.1;Parent=gene-A8144_12335;Dbxref=NCBI_GP:OAR20101.1;Name=OAR20101.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908269.1;locus_tag=A8144_12335;product=proteasome accessory factor PafA2;protein_id=OAR20101.1;transl_table=11
##sequence-region LYPH01000062.1 1 18852
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000062.1	Genbank	region	1	18852	.	+	.	ID=LYPH01000062.1:1..18852;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000062.1	Genbank	gene	436	915	.	-	.	ID=gene-A8144_12340;Name=A8144_12340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12340
LYPH01000062.1	GeneMarkS+	CDS	436	915	.	-	0	ID=cds-OAR20073.1;Parent=gene-A8144_12340;Dbxref=NCBI_GP:OAR20073.1;Name=OAR20073.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12340;product=hypothetical protein;protein_id=OAR20073.1;transl_table=11
LYPH01000062.1	Genbank	gene	1194	1397	.	+	.	ID=gene-A8144_12345;Name=A8144_12345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12345
LYPH01000062.1	GeneMarkS+	CDS	1194	1397	.	+	0	ID=cds-OAR20074.1;Parent=gene-A8144_12345;Dbxref=NCBI_GP:OAR20074.1;Name=OAR20074.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12345;product=hypothetical protein;protein_id=OAR20074.1;transl_table=11
LYPH01000062.1	Genbank	gene	1400	1720	.	-	.	ID=gene-A8144_12350;Name=A8144_12350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12350
LYPH01000062.1	GeneMarkS+	CDS	1400	1720	.	-	0	ID=cds-OAR20075.1;Parent=gene-A8144_12350;Dbxref=NCBI_GP:OAR20075.1;Name=OAR20075.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12350;product=hypothetical protein;protein_id=OAR20075.1;transl_table=11
LYPH01000062.1	Genbank	gene	1813	2115	.	+	.	ID=gene-A8144_12355;Name=A8144_12355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12355
LYPH01000062.1	GeneMarkS+	CDS	1813	2115	.	+	0	ID=cds-OAR20076.1;Parent=gene-A8144_12355;Dbxref=NCBI_GP:OAR20076.1;Name=OAR20076.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12355;product=hypothetical protein;protein_id=OAR20076.1;transl_table=11
LYPH01000062.1	Genbank	gene	2325	2525	.	-	.	ID=gene-A8144_12360;Name=A8144_12360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12360
LYPH01000062.1	GeneMarkS+	CDS	2325	2525	.	-	0	ID=cds-OAR20077.1;Parent=gene-A8144_12360;Dbxref=NCBI_GP:OAR20077.1;Name=OAR20077.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12360;product=hypothetical protein;protein_id=OAR20077.1;transl_table=11
LYPH01000062.1	Genbank	gene	2980	4809	.	-	.	ID=gene-A8144_12365;Name=A8144_12365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12365
LYPH01000062.1	Protein Homology	CDS	2980	4809	.	-	0	ID=cds-OAR20088.1;Parent=gene-A8144_12365;Dbxref=NCBI_GP:OAR20088.1;Name=OAR20088.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_018599607.1;locus_tag=A8144_12365;product=proteasome ATPase;protein_id=OAR20088.1;transl_table=11
LYPH01000062.1	Genbank	gene	5097	5681	.	+	.	ID=gene-A8144_12370;Name=A8144_12370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12370
LYPH01000062.1	Protein Homology	CDS	5097	5681	.	+	0	ID=cds-OAR20078.1;Parent=gene-A8144_12370;Dbxref=NCBI_GP:OAR20078.1;Name=OAR20078.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49803.1;locus_tag=A8144_12370;product=hypothetical protein;protein_id=OAR20078.1;transl_table=11
LYPH01000062.1	Genbank	gene	5690	5983	.	+	.	ID=gene-A8144_12375;Name=A8144_12375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12375
LYPH01000062.1	Protein Homology	CDS	5690	5983	.	+	0	ID=cds-OAR20079.1;Parent=gene-A8144_12375;Dbxref=NCBI_GP:OAR20079.1;Name=OAR20079.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008256301.1;locus_tag=A8144_12375;product=hypothetical protein;protein_id=OAR20079.1;transl_table=11
LYPH01000062.1	Genbank	gene	6097	6942	.	-	.	ID=gene-A8144_12380;Name=A8144_12380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12380
LYPH01000062.1	Protein Homology	CDS	6097	6942	.	-	0	ID=cds-OAR20080.1;Parent=gene-A8144_12380;Dbxref=NCBI_GP:OAR20080.1;Name=OAR20080.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014382450.1;locus_tag=A8144_12380;product=SAM-dependent methyltransferase;protein_id=OAR20080.1;transl_table=11
LYPH01000062.1	Genbank	gene	7016	7900	.	+	.	ID=gene-A8144_12385;Name=A8144_12385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12385
LYPH01000062.1	Protein Homology	CDS	7016	7900	.	+	0	ID=cds-OAR20081.1;Parent=gene-A8144_12385;Dbxref=NCBI_GP:OAR20081.1;Name=OAR20081.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908264.1;locus_tag=A8144_12385;product=recombinase RecB;protein_id=OAR20081.1;transl_table=11
LYPH01000062.1	Genbank	pseudogene	8006	9352	.	-	.	ID=gene-A8144_12390;Name=A8144_12390;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_12390;pseudo=true
LYPH01000062.1	Protein Homology	CDS	8006	9352	.	-	0	ID=cds-A8144_12390;Parent=gene-A8144_12390;Note=Enables the enzymatic reduction of mercuric ions to elemental mercury%3B frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014711538.1;locus_tag=A8144_12390;product=mercuric reductase;pseudo=true;transl_table=11
LYPH01000062.1	Genbank	gene	9341	9652	.	+	.	ID=gene-A8144_12395;Name=A8144_12395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12395
LYPH01000062.1	GeneMarkS+	CDS	9341	9652	.	+	0	ID=cds-OAR20082.1;Parent=gene-A8144_12395;Dbxref=NCBI_GP:OAR20082.1;Name=OAR20082.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12395;product=hypothetical protein;protein_id=OAR20082.1;transl_table=11
LYPH01000062.1	Genbank	gene	9940	10803	.	-	.	ID=gene-A8144_12400;Name=A8144_12400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12400
LYPH01000062.1	Protein Homology	CDS	9940	10803	.	-	0	ID=cds-OAR20083.1;Parent=gene-A8144_12400;Dbxref=NCBI_GP:OAR20083.1;Name=OAR20083.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015356102.1;locus_tag=A8144_12400;product=ATP phosphoribosyltransferase;protein_id=OAR20083.1;transl_table=11
LYPH01000062.1	Genbank	gene	10806	11087	.	-	.	ID=gene-A8144_12405;Name=A8144_12405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12405
LYPH01000062.1	Protein Homology	CDS	10806	11087	.	-	0	ID=cds-OAR20084.1;Parent=gene-A8144_12405;Dbxref=NCBI_GP:OAR20084.1;Name=OAR20084.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908262.1;locus_tag=A8144_12405;product=phosphoribosyl-ATP diphosphatase;protein_id=OAR20084.1;transl_table=11
LYPH01000062.1	Genbank	gene	11814	12221	.	+	.	ID=gene-A8144_12410;Name=A8144_12410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12410
LYPH01000062.1	GeneMarkS+	CDS	11814	12221	.	+	0	ID=cds-OAR20085.1;Parent=gene-A8144_12410;Dbxref=NCBI_GP:OAR20085.1;Name=OAR20085.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12410;product=hypothetical protein;protein_id=OAR20085.1;transl_table=11
LYPH01000062.1	Genbank	gene	12582	16202	.	-	.	ID=gene-A8144_12415;Name=A8144_12415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12415
LYPH01000062.1	Protein Homology	CDS	12582	16202	.	-	0	ID=cds-OAR20086.1;Parent=gene-A8144_12415;Dbxref=NCBI_GP:OAR20086.1;Name=OAR20086.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49775.3;locus_tag=A8144_12415;product=methionine synthase;protein_id=OAR20086.1;transl_table=11
LYPH01000062.1	Genbank	gene	16383	17234	.	+	.	ID=gene-A8144_12420;Name=A8144_12420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12420
LYPH01000062.1	Protein Homology	CDS	16383	17234	.	+	0	ID=cds-OAR20089.1;Parent=gene-A8144_12420;Dbxref=NCBI_GP:OAR20089.1;Name=OAR20089.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003878095.1;locus_tag=A8144_12420;product=carboxylate--amine ligase;protein_id=OAR20089.1;transl_table=11
LYPH01000062.1	Genbank	gene	17371	18852	.	+	.	ID=gene-A8144_12425;Name=A8144_12425;end_range=18852,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12425;partial=true
LYPH01000062.1	Protein Homology	CDS	17371	18852	.	+	0	ID=cds-OAR20087.1;Parent=gene-A8144_12425;Dbxref=NCBI_GP:OAR20087.1;Name=OAR20087.1;end_range=18852,.;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009953407.1;locus_tag=A8144_12425;partial=true;product=L-asparagine permease;protein_id=OAR20087.1;transl_table=11
##sequence-region LYPH01000063.1 1 19305
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000063.1	Genbank	region	1	19305	.	+	.	ID=LYPH01000063.1:1..19305;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000063.1	Genbank	gene	57	356	.	+	.	ID=gene-A8144_12430;Name=A8144_12430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12430
LYPH01000063.1	GeneMarkS+	CDS	57	356	.	+	0	ID=cds-OAR20058.1;Parent=gene-A8144_12430;Dbxref=NCBI_GP:OAR20058.1;Name=OAR20058.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12430;product=hypothetical protein;protein_id=OAR20058.1;transl_table=11
LYPH01000063.1	Genbank	gene	362	679	.	+	.	ID=gene-A8144_12435;Name=A8144_12435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12435
LYPH01000063.1	GeneMarkS+	CDS	362	679	.	+	0	ID=cds-OAR20059.1;Parent=gene-A8144_12435;Dbxref=NCBI_GP:OAR20059.1;Name=OAR20059.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12435;product=hypothetical protein;protein_id=OAR20059.1;transl_table=11
LYPH01000063.1	Genbank	gene	1900	2292	.	-	.	ID=gene-A8144_12440;Name=A8144_12440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12440
LYPH01000063.1	Protein Homology	CDS	1900	2292	.	-	0	ID=cds-OAR20060.1;Parent=gene-A8144_12440;Dbxref=NCBI_GP:OAR20060.1;Name=OAR20060.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907652.1;locus_tag=A8144_12440;product=hypothetical protein;protein_id=OAR20060.1;transl_table=11
LYPH01000063.1	Genbank	gene	3471	3710	.	-	.	ID=gene-A8144_12445;Name=A8144_12445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12445
LYPH01000063.1	Protein Homology	CDS	3471	3710	.	-	0	ID=cds-OAR20061.1;Parent=gene-A8144_12445;Dbxref=NCBI_GP:OAR20061.1;Name=OAR20061.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907653.1;locus_tag=A8144_12445;product=hypothetical protein;protein_id=OAR20061.1;transl_table=11
LYPH01000063.1	Genbank	gene	4639	4821	.	-	.	ID=gene-A8144_12450;Name=A8144_12450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12450
LYPH01000063.1	GeneMarkS+	CDS	4639	4821	.	-	0	ID=cds-OAR20062.1;Parent=gene-A8144_12450;Dbxref=NCBI_GP:OAR20062.1;Name=OAR20062.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12450;product=hypothetical protein;protein_id=OAR20062.1;transl_table=11
LYPH01000063.1	Genbank	gene	5319	5528	.	-	.	ID=gene-A8144_12455;Name=A8144_12455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12455
LYPH01000063.1	Protein Homology	CDS	5319	5528	.	-	0	ID=cds-OAR20063.1;Parent=gene-A8144_12455;Dbxref=NCBI_GP:OAR20063.1;Name=OAR20063.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907654.1;locus_tag=A8144_12455;product=hypothetical protein;protein_id=OAR20063.1;transl_table=11
LYPH01000063.1	cmsearch	binding_site	7251	7361	.	+	.	ID=id-LYPH01000063.1:7251..7361;Dbxref=RFAM:RF00059;Note=TPP riboswitch;bound_moiety=thiamine pyrophosphate;gbkey=misc_binding;inference=COORDINATES: profile:INFERNAL:1.1.1
LYPH01000063.1	Genbank	gene	7353	8996	.	+	.	ID=gene-A8144_12460;Name=A8144_12460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12460
LYPH01000063.1	Protein Homology	CDS	7353	8996	.	+	0	ID=cds-OAR20064.1;Parent=gene-A8144_12460;Dbxref=NCBI_GP:OAR20064.1;Name=OAR20064.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9ZBL0.1;locus_tag=A8144_12460;product=phosphomethylpyrimidine synthase;protein_id=OAR20064.1;transl_table=11
LYPH01000063.1	Genbank	gene	8993	9832	.	+	.	ID=gene-A8144_12465;Name=A8144_12465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12465
LYPH01000063.1	Protein Homology	CDS	8993	9832	.	+	0	ID=cds-OAR20065.1;Parent=gene-A8144_12465;Dbxref=NCBI_GP:OAR20065.1;Name=OAR20065.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9ZBL1.1;locus_tag=A8144_12465;product=bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase;protein_id=OAR20065.1;transl_table=11
LYPH01000063.1	Genbank	gene	10511	11296	.	-	.	ID=gene-A8144_12470;Name=thiG;gbkey=Gene;gene=thiG;gene_biotype=protein_coding;locus_tag=A8144_12470
LYPH01000063.1	Protein Homology	CDS	10511	11296	.	-	0	ID=cds-OAR20066.1;Parent=gene-A8144_12470;Dbxref=NCBI_GP:OAR20066.1;Name=OAR20066.1;Note=functions in thiamine (vitamin B1) biosynthesis%3B in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate;gbkey=CDS;gene=thiG;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9ZBL2.1;locus_tag=A8144_12470;product=thiazole synthase;protein_id=OAR20066.1;transl_table=11
LYPH01000063.1	Genbank	gene	11289	11513	.	-	.	ID=gene-A8144_12475;Name=A8144_12475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12475
LYPH01000063.1	Protein Homology	CDS	11289	11513	.	-	0	ID=cds-OAR20067.1;Parent=gene-A8144_12475;Dbxref=NCBI_GP:OAR20067.1;Name=OAR20067.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014209698.1;locus_tag=A8144_12475;product=thiamine biosynthesis protein ThiS;protein_id=OAR20067.1;transl_table=11
LYPH01000063.1	Genbank	gene	11521	12543	.	-	.	ID=gene-A8144_12480;Name=A8144_12480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12480
LYPH01000063.1	Protein Homology	CDS	11521	12543	.	-	0	ID=cds-OAR20068.1;Parent=gene-A8144_12480;Dbxref=NCBI_GP:OAR20068.1;Name=OAR20068.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907659.1;locus_tag=A8144_12480;product=glycine oxidase ThiO;protein_id=OAR20068.1;transl_table=11
LYPH01000063.1	cmsearch	binding_site	12534	12672	.	-	.	ID=id-LYPH01000063.1:12534..12672;Dbxref=RFAM:RF00059;Note=TPP riboswitch;bound_moiety=thiamine pyrophosphate;gbkey=misc_binding;inference=COORDINATES: profile:INFERNAL:1.1.1
LYPH01000063.1	Genbank	gene	12701	13408	.	+	.	ID=gene-A8144_12485;Name=A8144_12485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12485
LYPH01000063.1	Protein Homology	CDS	12701	13408	.	+	0	ID=cds-OAR20069.1;Parent=gene-A8144_12485;Dbxref=NCBI_GP:OAR20069.1;Name=OAR20069.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9ZBL5.1;locus_tag=A8144_12485;product=thiamine-phosphate diphosphorylase;protein_id=OAR20069.1;transl_table=11
LYPH01000063.1	Genbank	pseudogene	13401	14004	.	-	.	ID=gene-A8144_12490;Name=A8144_12490;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_12490;pseudo=true
LYPH01000063.1	Protein Homology	CDS	13401	14004	.	-	0	ID=cds-A8144_12490;Parent=gene-A8144_12490;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003918073.1;locus_tag=A8144_12490;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000063.1	Genbank	gene	14200	15519	.	+	.	ID=gene-A8144_12495;Name=A8144_12495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12495
LYPH01000063.1	Protein Homology	CDS	14200	15519	.	+	0	ID=cds-OAR20070.1;Parent=gene-A8144_12495;Dbxref=NCBI_GP:OAR20070.1;Name=OAR20070.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003932871.1;locus_tag=A8144_12495;product=hypothetical protein;protein_id=OAR20070.1;transl_table=11
LYPH01000063.1	Genbank	gene	15519	16496	.	+	.	ID=gene-A8144_12500;Name=A8144_12500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12500
LYPH01000063.1	Protein Homology	CDS	15519	16496	.	+	0	ID=cds-OAR20072.1;Parent=gene-A8144_12500;Dbxref=NCBI_GP:OAR20072.1;Name=OAR20072.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009952605.1;locus_tag=A8144_12500;product=ABC transporter substrate-binding protein;protein_id=OAR20072.1;transl_table=11
LYPH01000063.1	Genbank	gene	16496	18799	.	+	.	ID=gene-A8144_12505;Name=A8144_12505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12505
LYPH01000063.1	Protein Homology	CDS	16496	18799	.	+	0	ID=cds-OAR20071.1;Parent=gene-A8144_12505;Dbxref=NCBI_GP:OAR20071.1;Name=OAR20071.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907662.1;locus_tag=A8144_12505;product=serine/threonine protein kinase;protein_id=OAR20071.1;transl_table=11
##sequence-region LYPH01000064.1 1 18224
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000064.1	Genbank	region	1	18224	.	+	.	ID=LYPH01000064.1:1..18224;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000064.1	Genbank	pseudogene	1	197	.	+	.	ID=gene-A8144_12510;Name=A8144_12510;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_12510;pseudo=true
LYPH01000064.1	GeneMarkS+	CDS	1	197	.	+	2	ID=cds-A8144_12510;Parent=gene-A8144_12510;Note=incomplete%3B too short partial abutting assembly gap%3B missing start;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12510;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000064.1	Genbank	gene	2392	5571	.	+	.	ID=gene-A8144_12515;Name=A8144_12515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12515
LYPH01000064.1	Protein Homology	CDS	2392	5571	.	+	0	ID=cds-OAR20048.1;Parent=gene-A8144_12515;Dbxref=NCBI_GP:OAR20048.1;Name=OAR20048.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9X7E5.1;locus_tag=A8144_12515;product=isoleucine--tRNA ligase;protein_id=OAR20048.1;transl_table=11
LYPH01000064.1	Genbank	gene	5787	6053	.	-	.	ID=gene-A8144_12520;Name=A8144_12520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12520
LYPH01000064.1	GeneMarkS+	CDS	5787	6053	.	-	0	ID=cds-OAR20049.1;Parent=gene-A8144_12520;Dbxref=NCBI_GP:OAR20049.1;Name=OAR20049.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12520;product=hypothetical protein;protein_id=OAR20049.1;transl_table=11
LYPH01000064.1	Genbank	pseudogene	6296	7663	.	+	.	ID=gene-A8144_12525;Name=A8144_12525;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_12525;pseudo=true
LYPH01000064.1	Protein Homology	CDS	6296	7663	.	+	0	ID=cds-A8144_12525;Parent=gene-A8144_12525;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015293024.1;locus_tag=A8144_12525;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000064.1	Genbank	gene	7628	8560	.	-	.	ID=gene-A8144_12530;Name=A8144_12530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12530
LYPH01000064.1	Protein Homology	CDS	7628	8560	.	-	0	ID=cds-OAR20057.1;Parent=gene-A8144_12530;Dbxref=NCBI_GP:OAR20057.1;Name=OAR20057.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9X7E6.1;locus_tag=A8144_12530;product=L-asparaginase;protein_id=OAR20057.1;transl_table=11
LYPH01000064.1	Genbank	gene	8635	9240	.	+	.	ID=gene-A8144_12535;Name=A8144_12535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12535
LYPH01000064.1	Protein Homology	CDS	8635	9240	.	+	0	ID=cds-OAR20050.1;Parent=gene-A8144_12535;Dbxref=NCBI_GP:OAR20050.1;Name=OAR20050.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9X7E7.1;locus_tag=A8144_12535;product=signal peptidase II;protein_id=OAR20050.1;transl_table=11
LYPH01000064.1	Genbank	gene	9359	10285	.	+	.	ID=gene-A8144_12540;Name=A8144_12540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12540
LYPH01000064.1	Protein Homology	CDS	9359	10285	.	+	0	ID=cds-OAR20051.1;Parent=gene-A8144_12540;Dbxref=NCBI_GP:OAR20051.1;Name=OAR20051.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908195.1;locus_tag=A8144_12540;product=RNA pseudouridine synthase;protein_id=OAR20051.1;transl_table=11
LYPH01000064.1	Genbank	gene	12209	12397	.	-	.	ID=gene-A8144_12545;Name=A8144_12545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12545
LYPH01000064.1	GeneMarkS+	CDS	12209	12397	.	-	0	ID=cds-OAR20052.1;Parent=gene-A8144_12545;Dbxref=NCBI_GP:OAR20052.1;Name=OAR20052.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12545;product=hypothetical protein;protein_id=OAR20052.1;transl_table=11
LYPH01000064.1	Genbank	gene	12583	12858	.	+	.	ID=gene-A8144_12550;Name=A8144_12550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12550
LYPH01000064.1	GeneMarkS+	CDS	12583	12858	.	+	0	ID=cds-OAR20053.1;Parent=gene-A8144_12550;Dbxref=NCBI_GP:OAR20053.1;Name=OAR20053.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12550;product=hypothetical protein;protein_id=OAR20053.1;transl_table=11
LYPH01000064.1	Genbank	gene	13121	13408	.	-	.	ID=gene-A8144_12555;Name=A8144_12555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12555
LYPH01000064.1	GeneMarkS+	CDS	13121	13408	.	-	0	ID=cds-OAR20054.1;Parent=gene-A8144_12555;Dbxref=NCBI_GP:OAR20054.1;Name=OAR20054.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12555;product=hypothetical protein;protein_id=OAR20054.1;transl_table=11
LYPH01000064.1	Genbank	gene	13413	13679	.	-	.	ID=gene-A8144_12560;Name=A8144_12560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12560
LYPH01000064.1	GeneMarkS+	CDS	13413	13679	.	-	0	ID=cds-OAR20055.1;Parent=gene-A8144_12560;Dbxref=NCBI_GP:OAR20055.1;Name=OAR20055.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12560;product=hypothetical protein;protein_id=OAR20055.1;transl_table=11
LYPH01000064.1	Genbank	gene	14620	18153	.	+	.	ID=gene-A8144_12565;Name=A8144_12565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12565
LYPH01000064.1	Protein Homology	CDS	14620	18153	.	+	0	ID=cds-OAR20056.1;Parent=gene-A8144_12565;Dbxref=NCBI_GP:OAR20056.1;Name=OAR20056.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9X7F0.1;locus_tag=A8144_12565;product=DNA polymerase III subunit alpha;protein_id=OAR20056.1;transl_table=11
##sequence-region LYPH01000065.1 1 17248
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000065.1	Genbank	region	1	17248	.	+	.	ID=LYPH01000065.1:1..17248;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000065.1	Genbank	gene	328	1953	.	-	.	ID=gene-A8144_12570;Name=A8144_12570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12570
LYPH01000065.1	Protein Homology	CDS	328	1953	.	-	0	ID=cds-OAR20030.1;Parent=gene-A8144_12570;Dbxref=NCBI_GP:OAR20030.1;Name=OAR20030.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008713461.1;locus_tag=A8144_12570;product=chaperonin GroL;protein_id=OAR20030.1;transl_table=11
LYPH01000065.1	Genbank	gene	2162	2764	.	-	.	ID=gene-A8144_12575;Name=A8144_12575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12575
LYPH01000065.1	Protein Homology	CDS	2162	2764	.	-	0	ID=cds-OAR20031.1;Parent=gene-A8144_12575;Dbxref=NCBI_GP:OAR20031.1;Name=OAR20031.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907668.1;locus_tag=A8144_12575;product=TetR family transcriptional regulator;protein_id=OAR20031.1;transl_table=11
LYPH01000065.1	Genbank	gene	2859	3773	.	+	.	ID=gene-A8144_12580;Name=A8144_12580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12580
LYPH01000065.1	Protein Homology	CDS	2859	3773	.	+	0	ID=cds-OAR20032.1;Parent=gene-A8144_12580;Dbxref=NCBI_GP:OAR20032.1;Name=OAR20032.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907667.1;locus_tag=A8144_12580;product=short-chain dehydrogenase;protein_id=OAR20032.1;transl_table=11
LYPH01000065.1	Genbank	gene	4323	4523	.	-	.	ID=gene-A8144_12585;Name=A8144_12585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12585
LYPH01000065.1	GeneMarkS+	CDS	4323	4523	.	-	0	ID=cds-OAR20033.1;Parent=gene-A8144_12585;Dbxref=NCBI_GP:OAR20033.1;Name=OAR20033.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12585;product=hypothetical protein;protein_id=OAR20033.1;transl_table=11
LYPH01000065.1	Genbank	gene	4580	5032	.	-	.	ID=gene-A8144_12590;Name=A8144_12590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12590
LYPH01000065.1	GeneMarkS+	CDS	4580	5032	.	-	0	ID=cds-OAR20034.1;Parent=gene-A8144_12590;Dbxref=NCBI_GP:OAR20034.1;Name=OAR20034.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12590;product=hypothetical protein;protein_id=OAR20034.1;transl_table=11
LYPH01000065.1	Genbank	gene	5603	6700	.	+	.	ID=gene-A8144_12595;Name=A8144_12595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12595
LYPH01000065.1	Protein Homology	CDS	5603	6700	.	+	0	ID=cds-OAR20035.1;Parent=gene-A8144_12595;Dbxref=NCBI_GP:OAR20035.1;Name=OAR20035.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007776670.1;locus_tag=A8144_12595;product=esterase;protein_id=OAR20035.1;transl_table=11
LYPH01000065.1	Genbank	gene	6935	7381	.	+	.	ID=gene-A8144_12600;Name=A8144_12600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12600
LYPH01000065.1	GeneMarkS+	CDS	6935	7381	.	+	0	ID=cds-OAR20036.1;Parent=gene-A8144_12600;Dbxref=NCBI_GP:OAR20036.1;Name=OAR20036.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12600;product=hypothetical protein;protein_id=OAR20036.1;transl_table=11
LYPH01000065.1	Genbank	pseudogene	7476	8757	.	+	.	ID=gene-A8144_12605;Name=A8144_12605;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_12605;pseudo=true
LYPH01000065.1	Protein Homology	CDS	7476	8757	.	+	0	ID=cds-A8144_12605;Parent=gene-A8144_12605;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_013470573.1;locus_tag=A8144_12605;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000065.1	Genbank	gene	8795	9526	.	+	.	ID=gene-A8144_12610;Name=A8144_12610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12610
LYPH01000065.1	Protein Homology	CDS	8795	9526	.	+	0	ID=cds-OAR20037.1;Parent=gene-A8144_12610;Dbxref=NCBI_GP:OAR20037.1;Name=OAR20037.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCW9.1;locus_tag=A8144_12610;product=phosphatidylserine decarboxylase;protein_id=OAR20037.1;transl_table=11
LYPH01000065.1	Genbank	gene	9523	10425	.	+	.	ID=gene-A8144_12615;Name=A8144_12615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12615
LYPH01000065.1	Protein Homology	CDS	9523	10425	.	+	0	ID=cds-OAR20038.1;Parent=gene-A8144_12615;Dbxref=NCBI_GP:OAR20038.1;Name=OAR20038.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9ZBM2.1;locus_tag=A8144_12615;product=CDP-diacylglycerol--serine O-phosphatidyltransferase;protein_id=OAR20038.1;transl_table=11
LYPH01000065.1	Genbank	gene	10625	10861	.	+	.	ID=gene-A8144_12620;Name=A8144_12620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12620
LYPH01000065.1	GeneMarkS+	CDS	10625	10861	.	+	0	ID=cds-OAR20039.1;Parent=gene-A8144_12620;Dbxref=NCBI_GP:OAR20039.1;Name=OAR20039.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12620;product=hypothetical protein;protein_id=OAR20039.1;transl_table=11
LYPH01000065.1	Genbank	gene	10858	11073	.	-	.	ID=gene-A8144_12625;Name=A8144_12625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12625
LYPH01000065.1	GeneMarkS+	CDS	10858	11073	.	-	0	ID=cds-OAR20040.1;Parent=gene-A8144_12625;Dbxref=NCBI_GP:OAR20040.1;Name=OAR20040.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12625;product=hypothetical protein;protein_id=OAR20040.1;transl_table=11
LYPH01000065.1	Genbank	gene	11315	11587	.	-	.	ID=gene-A8144_12630;Name=A8144_12630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12630
LYPH01000065.1	GeneMarkS+	CDS	11315	11587	.	-	0	ID=cds-OAR20041.1;Parent=gene-A8144_12630;Dbxref=NCBI_GP:OAR20041.1;Name=OAR20041.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12630;product=hypothetical protein;protein_id=OAR20041.1;transl_table=11
LYPH01000065.1	Genbank	gene	11926	12210	.	+	.	ID=gene-A8144_12635;Name=A8144_12635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12635
LYPH01000065.1	GeneMarkS+	CDS	11926	12210	.	+	0	ID=cds-OAR20042.1;Parent=gene-A8144_12635;Dbxref=NCBI_GP:OAR20042.1;Name=OAR20042.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12635;product=hypothetical protein;protein_id=OAR20042.1;transl_table=11
LYPH01000065.1	Genbank	gene	12310	13014	.	-	.	ID=gene-A8144_12640;Name=A8144_12640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12640
LYPH01000065.1	Protein Homology	CDS	12310	13014	.	-	0	ID=cds-OAR20043.1;Parent=gene-A8144_12640;Dbxref=NCBI_GP:OAR20043.1;Name=OAR20043.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907663.1;locus_tag=A8144_12640;product=hypothetical protein;protein_id=OAR20043.1;transl_table=11
LYPH01000065.1	Genbank	gene	14755	15072	.	-	.	ID=gene-A8144_12645;Name=A8144_12645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12645
LYPH01000065.1	GeneMarkS+	CDS	14755	15072	.	-	0	ID=cds-OAR20044.1;Parent=gene-A8144_12645;Dbxref=NCBI_GP:OAR20044.1;Name=OAR20044.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12645;product=hypothetical protein;protein_id=OAR20044.1;transl_table=11
LYPH01000065.1	Genbank	gene	16167	16481	.	+	.	ID=gene-A8144_12650;Name=A8144_12650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12650
LYPH01000065.1	GeneMarkS+	CDS	16167	16481	.	+	0	ID=cds-OAR20045.1;Parent=gene-A8144_12650;Dbxref=NCBI_GP:OAR20045.1;Name=OAR20045.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12650;product=hypothetical protein;protein_id=OAR20045.1;transl_table=11
LYPH01000065.1	Genbank	gene	16515	16694	.	+	.	ID=gene-A8144_12655;Name=A8144_12655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12655
LYPH01000065.1	GeneMarkS+	CDS	16515	16694	.	+	0	ID=cds-OAR20046.1;Parent=gene-A8144_12655;Dbxref=NCBI_GP:OAR20046.1;Name=OAR20046.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12655;product=hypothetical protein;protein_id=OAR20046.1;transl_table=11
LYPH01000065.1	Genbank	gene	16705	16929	.	+	.	ID=gene-A8144_12660;Name=A8144_12660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12660
LYPH01000065.1	GeneMarkS+	CDS	16705	16929	.	+	0	ID=cds-OAR20047.1;Parent=gene-A8144_12660;Dbxref=NCBI_GP:OAR20047.1;Name=OAR20047.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12660;product=hypothetical protein;protein_id=OAR20047.1;transl_table=11
##sequence-region LYPH01000066.1 1 93411
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000066.1	Genbank	region	1	93411	.	+	.	ID=LYPH01000066.1:1..93411;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000066.1	Genbank	gene	180	656	.	-	.	ID=gene-A8144_03135;Name=A8144_03135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03135
LYPH01000066.1	Protein Homology	CDS	180	656	.	-	0	ID=cds-OAR19968.1;Parent=gene-A8144_03135;Dbxref=NCBI_GP:OAR19968.1;Name=OAR19968.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907726.1;locus_tag=A8144_03135;product=hypothetical protein;protein_id=OAR19968.1;transl_table=11
LYPH01000066.1	Genbank	gene	1299	1493	.	-	.	ID=gene-A8144_03140;Name=A8144_03140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03140
LYPH01000066.1	GeneMarkS+	CDS	1299	1493	.	-	0	ID=cds-OAR19969.1;Parent=gene-A8144_03140;Dbxref=NCBI_GP:OAR19969.1;Name=OAR19969.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03140;product=hypothetical protein;protein_id=OAR19969.1;transl_table=11
LYPH01000066.1	Genbank	gene	1887	2132	.	-	.	ID=gene-A8144_03145;Name=A8144_03145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03145
LYPH01000066.1	GeneMarkS+	CDS	1887	2132	.	-	0	ID=cds-OAR19970.1;Parent=gene-A8144_03145;Dbxref=NCBI_GP:OAR19970.1;Name=OAR19970.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03145;product=hypothetical protein;protein_id=OAR19970.1;transl_table=11
LYPH01000066.1	Genbank	gene	2129	2356	.	-	.	ID=gene-A8144_03150;Name=A8144_03150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03150
LYPH01000066.1	GeneMarkS+	CDS	2129	2356	.	-	0	ID=cds-OAR19971.1;Parent=gene-A8144_03150;Dbxref=NCBI_GP:OAR19971.1;Name=OAR19971.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03150;product=hypothetical protein;protein_id=OAR19971.1;transl_table=11
LYPH01000066.1	Genbank	gene	2521	2751	.	+	.	ID=gene-A8144_03155;Name=A8144_03155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03155
LYPH01000066.1	GeneMarkS+	CDS	2521	2751	.	+	0	ID=cds-OAR19972.1;Parent=gene-A8144_03155;Dbxref=NCBI_GP:OAR19972.1;Name=OAR19972.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03155;product=hypothetical protein;protein_id=OAR19972.1;transl_table=11
LYPH01000066.1	Genbank	gene	3734	4141	.	+	.	ID=gene-A8144_03160;Name=A8144_03160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03160
LYPH01000066.1	GeneMarkS+	CDS	3734	4141	.	+	0	ID=cds-OAR19973.1;Parent=gene-A8144_03160;Dbxref=NCBI_GP:OAR19973.1;Name=OAR19973.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03160;product=hypothetical protein;protein_id=OAR19973.1;transl_table=11
LYPH01000066.1	Genbank	gene	5829	6116	.	+	.	ID=gene-A8144_03165;Name=A8144_03165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03165
LYPH01000066.1	GeneMarkS+	CDS	5829	6116	.	+	0	ID=cds-OAR19974.1;Parent=gene-A8144_03165;Dbxref=NCBI_GP:OAR19974.1;Name=OAR19974.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03165;product=hypothetical protein;protein_id=OAR19974.1;transl_table=11
LYPH01000066.1	Genbank	gene	6223	8367	.	-	.	ID=gene-A8144_03170;Name=A8144_03170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03170
LYPH01000066.1	Protein Homology	CDS	6223	8367	.	-	0	ID=cds-OAR19975.1;Parent=gene-A8144_03170;Dbxref=NCBI_GP:OAR19975.1;Name=OAR19975.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908742.1;locus_tag=A8144_03170;product=3-hydroxyacyl-CoA dehydrogenase;protein_id=OAR19975.1;transl_table=11
LYPH01000066.1	Genbank	gene	8372	9583	.	-	.	ID=gene-A8144_03175;Name=A8144_03175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03175
LYPH01000066.1	Protein Homology	CDS	8372	9583	.	-	0	ID=cds-OAR19976.1;Parent=gene-A8144_03175;Dbxref=NCBI_GP:OAR19976.1;Name=OAR19976.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007777222.1;locus_tag=A8144_03175;product=acetyl-CoA acetyltransferase;protein_id=OAR19976.1;transl_table=11
LYPH01000066.1	Genbank	pseudogene	9836	10931	.	+	.	ID=gene-A8144_03180;Name=A8144_03180;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03180;pseudo=true
LYPH01000066.1	Protein Homology	CDS	9836	10931	.	+	0	ID=cds-A8144_03180;Parent=gene-A8144_03180;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015626949.1;locus_tag=A8144_03180;product=aminotransferase;pseudo=true;transl_table=11
LYPH01000066.1	Genbank	pseudogene	11771	12531	.	-	.	ID=gene-A8144_03185;Name=A8144_03185;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03185;pseudo=true
LYPH01000066.1	Protein Homology	CDS	11771	12531	.	-	0	ID=cds-A8144_03185;Parent=gene-A8144_03185;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015357124.1;locus_tag=A8144_03185;product=carnitine dehydratase;pseudo=true;transl_table=11
LYPH01000066.1	Genbank	gene	13027	14736	.	+	.	ID=gene-A8144_03190;Name=A8144_03190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03190
LYPH01000066.1	Protein Homology	CDS	13027	14736	.	+	0	ID=cds-OAR19977.1;Parent=gene-A8144_03190;Dbxref=NCBI_GP:OAR19977.1;Name=OAR19977.1;Note=thiamindiphosphate-dependent%3B catalyzes the formation of indoleacetaldehyde from indolepyruvate;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBD6.1;locus_tag=A8144_03190;product=indolepyruvate decarboxylase;protein_id=OAR19977.1;transl_table=11
LYPH01000066.1	Genbank	gene	15685	15933	.	+	.	ID=gene-A8144_03195;Name=A8144_03195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03195
LYPH01000066.1	GeneMarkS+	CDS	15685	15933	.	+	0	ID=cds-OAR19978.1;Parent=gene-A8144_03195;Dbxref=NCBI_GP:OAR19978.1;Name=OAR19978.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03195;product=hypothetical protein;protein_id=OAR19978.1;transl_table=11
LYPH01000066.1	Genbank	gene	16271	16495	.	-	.	ID=gene-A8144_03200;Name=A8144_03200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03200
LYPH01000066.1	Protein Homology	CDS	16271	16495	.	-	0	ID=cds-OAR19979.1;Parent=gene-A8144_03200;Dbxref=NCBI_GP:OAR19979.1;Name=OAR19979.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908745.1;locus_tag=A8144_03200;product=hypothetical protein;protein_id=OAR19979.1;transl_table=11
LYPH01000066.1	Genbank	gene	16525	16731	.	-	.	ID=gene-A8144_03205;Name=A8144_03205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03205
LYPH01000066.1	GeneMarkS+	CDS	16525	16731	.	-	0	ID=cds-OAR19980.1;Parent=gene-A8144_03205;Dbxref=NCBI_GP:OAR19980.1;Name=OAR19980.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03205;product=hypothetical protein;protein_id=OAR19980.1;transl_table=11
LYPH01000066.1	Genbank	pseudogene	16788	17927	.	-	.	ID=gene-A8144_03210;Name=A8144_03210;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03210;pseudo=true
LYPH01000066.1	Protein Homology	CDS	16788	17927	.	-	0	ID=cds-A8144_03210;Parent=gene-A8144_03210;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014212313.1;locus_tag=A8144_03210;product=amidohydrolase;pseudo=true;transl_table=11
LYPH01000066.1	Genbank	pseudogene	18204	19792	.	+	.	ID=gene-A8144_03215;Name=A8144_03215;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03215;pseudo=true
LYPH01000066.1	Protein Homology	CDS	18204	19792	.	+	0	ID=cds-A8144_03215;Parent=gene-A8144_03215;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008257387.1;locus_tag=A8144_03215;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000066.1	Genbank	gene	20309	20665	.	+	.	ID=gene-A8144_03220;Name=A8144_03220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03220
LYPH01000066.1	Protein Homology	CDS	20309	20665	.	+	0	ID=cds-OAR19981.1;Parent=gene-A8144_03220;Dbxref=NCBI_GP:OAR19981.1;Name=OAR19981.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908746.1;locus_tag=A8144_03220;product=hypothetical protein;protein_id=OAR19981.1;transl_table=11
LYPH01000066.1	Genbank	gene	21079	21471	.	+	.	ID=gene-A8144_03225;Name=A8144_03225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03225
LYPH01000066.1	GeneMarkS+	CDS	21079	21471	.	+	0	ID=cds-OAR19982.1;Parent=gene-A8144_03225;Dbxref=NCBI_GP:OAR19982.1;Name=OAR19982.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03225;product=hypothetical protein;protein_id=OAR19982.1;transl_table=11
LYPH01000066.1	Genbank	gene	21461	21646	.	+	.	ID=gene-A8144_03230;Name=A8144_03230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03230
LYPH01000066.1	GeneMarkS+	CDS	21461	21646	.	+	0	ID=cds-OAR19983.1;Parent=gene-A8144_03230;Dbxref=NCBI_GP:OAR19983.1;Name=OAR19983.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03230;product=hypothetical protein;protein_id=OAR19983.1;transl_table=11
LYPH01000066.1	Genbank	gene	23200	23604	.	+	.	ID=gene-A8144_03235;Name=A8144_03235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03235
LYPH01000066.1	Protein Homology	CDS	23200	23604	.	+	0	ID=cds-OAR19984.1;Parent=gene-A8144_03235;Dbxref=NCBI_GP:OAR19984.1;Name=OAR19984.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908747.1;locus_tag=A8144_03235;product=cytidine deaminase;protein_id=OAR19984.1;transl_table=11
LYPH01000066.1	Genbank	gene	23738	23974	.	-	.	ID=gene-A8144_03240;Name=A8144_03240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03240
LYPH01000066.1	GeneMarkS+	CDS	23738	23974	.	-	0	ID=cds-OAR19985.1;Parent=gene-A8144_03240;Dbxref=NCBI_GP:OAR19985.1;Name=OAR19985.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03240;product=hypothetical protein;protein_id=OAR19985.1;transl_table=11
LYPH01000066.1	Genbank	gene	24533	24724	.	-	.	ID=gene-A8144_03245;Name=A8144_03245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03245
LYPH01000066.1	GeneMarkS+	CDS	24533	24724	.	-	0	ID=cds-OAR19986.1;Parent=gene-A8144_03245;Dbxref=NCBI_GP:OAR19986.1;Name=OAR19986.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03245;product=hypothetical protein;protein_id=OAR19986.1;transl_table=11
LYPH01000066.1	Genbank	gene	25246	25503	.	+	.	ID=gene-A8144_03250;Name=A8144_03250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03250
LYPH01000066.1	Protein Homology	CDS	25246	25503	.	+	0	ID=cds-OAR19987.1;Parent=gene-A8144_03250;Dbxref=NCBI_GP:OAR19987.1;Name=OAR19987.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908748.1;locus_tag=A8144_03250;product=hypothetical protein;protein_id=OAR19987.1;transl_table=11
LYPH01000066.1	Genbank	gene	25656	26609	.	-	.	ID=gene-A8144_03255;Name=A8144_03255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03255
LYPH01000066.1	Protein Homology	CDS	25656	26609	.	-	0	ID=cds-OAR19988.1;Parent=gene-A8144_03255;Dbxref=NCBI_GP:OAR19988.1;Name=OAR19988.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908749.1;locus_tag=A8144_03255;product=uridine phosphorylase;protein_id=OAR19988.1;transl_table=11
LYPH01000066.1	Genbank	gene	26850	27101	.	-	.	ID=gene-A8144_03260;Name=A8144_03260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03260
LYPH01000066.1	Protein Homology	CDS	26850	27101	.	-	0	ID=cds-OAR19989.1;Parent=gene-A8144_03260;Dbxref=NCBI_GP:OAR19989.1;Name=OAR19989.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908750.1;locus_tag=A8144_03260;product=hypothetical protein;protein_id=OAR19989.1;transl_table=11
LYPH01000066.1	Genbank	pseudogene	30532	31578	.	+	.	ID=gene-A8144_03265;Name=A8144_03265;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03265;pseudo=true
LYPH01000066.1	Protein Homology	CDS	30532	31578	.	+	0	ID=cds-A8144_03265;Parent=gene-A8144_03265;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014381796.1;locus_tag=A8144_03265;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000066.1	Genbank	gene	31637	31713	.	-	.	ID=gene-A8144_03270;Name=A8144_03270;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_03270
LYPH01000066.1	tRNAscan-SE	tRNA	31637	31713	.	-	.	ID=rna-A8144_03270;Parent=gene-A8144_03270;anticodon=(pos:complement(31677..31679));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_03270;product=tRNA-Phe
LYPH01000066.1	tRNAscan-SE	exon	31637	31713	.	-	.	ID=exon-A8144_03270-1;Parent=rna-A8144_03270;anticodon=(pos:complement(31677..31679));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_03270;product=tRNA-Phe
LYPH01000066.1	Genbank	gene	31742	31818	.	-	.	ID=gene-A8144_03275;Name=A8144_03275;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_03275
LYPH01000066.1	tRNAscan-SE	tRNA	31742	31818	.	-	.	ID=rna-A8144_03275;Parent=gene-A8144_03275;anticodon=(pos:complement(31782..31784));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_03275;product=tRNA-Asp
LYPH01000066.1	tRNAscan-SE	exon	31742	31818	.	-	.	ID=exon-A8144_03275-1;Parent=rna-A8144_03275;anticodon=(pos:complement(31782..31784));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_03275;product=tRNA-Asp
LYPH01000066.1	Genbank	gene	31849	31921	.	-	.	ID=gene-A8144_03280;Name=A8144_03280;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_03280
LYPH01000066.1	tRNAscan-SE	tRNA	31849	31921	.	-	.	ID=rna-A8144_03280;Parent=gene-A8144_03280;anticodon=(pos:complement(31885..31887));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_03280;product=tRNA-Glu
LYPH01000066.1	tRNAscan-SE	exon	31849	31921	.	-	.	ID=exon-A8144_03280-1;Parent=rna-A8144_03280;anticodon=(pos:complement(31885..31887));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_03280;product=tRNA-Glu
LYPH01000066.1	Genbank	gene	32045	32117	.	+	.	ID=gene-A8144_03285;Name=A8144_03285;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_03285
LYPH01000066.1	tRNAscan-SE	tRNA	32045	32117	.	+	.	ID=rna-A8144_03285;Parent=gene-A8144_03285;anticodon=(pos:32078..32080);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_03285;product=tRNA-Lys
LYPH01000066.1	tRNAscan-SE	exon	32045	32117	.	+	.	ID=exon-A8144_03285-1;Parent=rna-A8144_03285;anticodon=(pos:32078..32080);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_03285;product=tRNA-Lys
LYPH01000066.1	Genbank	gene	32932	33135	.	+	.	ID=gene-A8144_03290;Name=A8144_03290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03290
LYPH01000066.1	GeneMarkS+	CDS	32932	33135	.	+	0	ID=cds-OAR19990.1;Parent=gene-A8144_03290;Dbxref=NCBI_GP:OAR19990.1;Name=OAR19990.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03290;product=hypothetical protein;protein_id=OAR19990.1;transl_table=11
LYPH01000066.1	Genbank	gene	33196	33387	.	-	.	ID=gene-A8144_03295;Name=A8144_03295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03295
LYPH01000066.1	GeneMarkS+	CDS	33196	33387	.	-	0	ID=cds-OAR19991.1;Parent=gene-A8144_03295;Dbxref=NCBI_GP:OAR19991.1;Name=OAR19991.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03295;product=hypothetical protein;protein_id=OAR19991.1;transl_table=11
LYPH01000066.1	Genbank	gene	33853	34119	.	-	.	ID=gene-A8144_03300;Name=A8144_03300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03300
LYPH01000066.1	GeneMarkS+	CDS	33853	34119	.	-	0	ID=cds-OAR19992.1;Parent=gene-A8144_03300;Dbxref=NCBI_GP:OAR19992.1;Name=OAR19992.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03300;product=hypothetical protein;protein_id=OAR19992.1;transl_table=11
LYPH01000066.1	Genbank	pseudogene	34305	35287	.	-	.	ID=gene-A8144_03305;Name=A8144_03305;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03305;pseudo=true
LYPH01000066.1	Protein Homology	CDS	34305	35287	.	-	0	ID=cds-A8144_03305;Parent=gene-A8144_03305;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003917352.1;locus_tag=A8144_03305;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000066.1	Genbank	gene	36275	37291	.	+	.	ID=gene-A8144_03310;Name=A8144_03310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03310
LYPH01000066.1	Protein Homology	CDS	36275	37291	.	+	0	ID=cds-OAR19993.1;Parent=gene-A8144_03310;Dbxref=NCBI_GP:OAR19993.1;Name=OAR19993.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007777619.1;locus_tag=A8144_03310;product=acyl-ACP desaturase;protein_id=OAR19993.1;transl_table=11
LYPH01000066.1	Genbank	gene	37299	38489	.	+	.	ID=gene-A8144_03315;Name=A8144_03315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03315
LYPH01000066.1	Protein Homology	CDS	37299	38489	.	+	0	ID=cds-OAR19994.1;Parent=gene-A8144_03315;Dbxref=NCBI_GP:OAR19994.1;Name=OAR19994.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003877212.1;locus_tag=A8144_03315;product=tRNA-dihydrouridine synthase;protein_id=OAR19994.1;transl_table=11
LYPH01000066.1	Genbank	pseudogene	39201	40538	.	+	.	ID=gene-A8144_03320;Name=A8144_03320;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03320;pseudo=true
LYPH01000066.1	Protein Homology	CDS	39201	40538	.	+	0	ID=cds-A8144_03320;Parent=gene-A8144_03320;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019683818.1;locus_tag=A8144_03320;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000066.1	Genbank	gene	40637	41305	.	+	.	ID=gene-A8144_03325;Name=A8144_03325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03325
LYPH01000066.1	Protein Homology	CDS	40637	41305	.	+	0	ID=cds-OAR19995.1;Parent=gene-A8144_03325;Dbxref=NCBI_GP:OAR19995.1;Name=OAR19995.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q50047.1;locus_tag=A8144_03325;product=phosphate transport system regulatory protein PhoU;protein_id=OAR19995.1;transl_table=11
LYPH01000066.1	Genbank	gene	41332	42108	.	-	.	ID=gene-A8144_03330;Name=A8144_03330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03330
LYPH01000066.1	Protein Homology	CDS	41332	42108	.	-	0	ID=cds-OAR19996.1;Parent=gene-A8144_03330;Dbxref=NCBI_GP:OAR19996.1;Name=OAR19996.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005112721.1;locus_tag=A8144_03330;product=phosphate ABC transporter ATP-binding protein;protein_id=OAR19996.1;transl_table=11
LYPH01000066.1	Genbank	pseudogene	42179	42937	.	-	.	ID=gene-A8144_03335;Name=A8144_03335;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03335;pseudo=true
LYPH01000066.1	Protein Homology	CDS	42179	42937	.	-	0	ID=cds-A8144_03335;Parent=gene-A8144_03335;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019736535.1;locus_tag=A8144_03335;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000066.1	Genbank	pseudogene	42937	43870	.	-	.	ID=gene-A8144_03340;Name=A8144_03340;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03340;pseudo=true
LYPH01000066.1	Protein Homology	CDS	42937	43870	.	-	0	ID=cds-A8144_03340;Parent=gene-A8144_03340;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011730785.1;locus_tag=A8144_03340;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000066.1	Genbank	gene	43890	45179	.	-	.	ID=gene-A8144_03345;Name=A8144_03345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03345
LYPH01000066.1	Protein Homology	CDS	43890	45179	.	-	0	ID=cds-OAR19997.1;Parent=gene-A8144_03345;Dbxref=NCBI_GP:OAR19997.1;Name=OAR19997.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908755.1;locus_tag=A8144_03345;product=phosphate ABC transporter substrate-binding protein PstS;protein_id=OAR19997.1;transl_table=11
LYPH01000066.1	Genbank	gene	45172	46107	.	-	.	ID=gene-A8144_03350;Name=A8144_03350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03350
LYPH01000066.1	Protein Homology	CDS	45172	46107	.	-	0	ID=cds-OAR20027.1;Parent=gene-A8144_03350;Dbxref=NCBI_GP:OAR20027.1;Name=OAR20027.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBC9.1;locus_tag=A8144_03350;product=mycothiol synthase;protein_id=OAR20027.1;transl_table=11
LYPH01000066.1	Genbank	pseudogene	46107	46874	.	-	.	ID=gene-A8144_03355;Name=A8144_03355;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03355;pseudo=true
LYPH01000066.1	Protein Homology	CDS	46107	46874	.	-	0	ID=cds-A8144_03355;Parent=gene-A8144_03355;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003875810.1;locus_tag=A8144_03355;product=transcriptional regulator;pseudo=true;transl_table=11
LYPH01000066.1	Genbank	gene	47063	47875	.	+	.	ID=gene-A8144_03360;Name=A8144_03360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03360
LYPH01000066.1	Protein Homology	CDS	47063	47875	.	+	0	ID=cds-OAR19998.1;Parent=gene-A8144_03360;Dbxref=NCBI_GP:OAR19998.1;Name=OAR19998.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003875809.1;locus_tag=A8144_03360;product=hypothetical protein;protein_id=OAR19998.1;transl_table=11
LYPH01000066.1	Genbank	gene	47968	48390	.	+	.	ID=gene-A8144_03365;Name=A8144_03365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03365
LYPH01000066.1	Protein Homology	CDS	47968	48390	.	+	0	ID=cds-OAR20028.1;Parent=gene-A8144_03365;Dbxref=NCBI_GP:OAR20028.1;Name=OAR20028.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908758.1;locus_tag=A8144_03365;product=thiol reductase thioredoxin;protein_id=OAR20028.1;transl_table=11
LYPH01000066.1	Genbank	gene	48603	49088	.	+	.	ID=gene-A8144_03370;Name=A8144_03370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03370
LYPH01000066.1	Protein Homology	CDS	48603	49088	.	+	0	ID=cds-OAR19999.1;Parent=gene-A8144_03370;Dbxref=NCBI_GP:OAR19999.1;Name=OAR19999.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908759.1;locus_tag=A8144_03370;product=hypothetical protein;protein_id=OAR19999.1;transl_table=11
LYPH01000066.1	Genbank	gene	49120	49953	.	+	.	ID=gene-A8144_03375;Name=A8144_03375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03375
LYPH01000066.1	Protein Homology	CDS	49120	49953	.	+	0	ID=cds-OAR20000.1;Parent=gene-A8144_03375;Dbxref=NCBI_GP:OAR20000.1;Name=OAR20000.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q50036.1;locus_tag=A8144_03375;product=thiosulfate sulfurtransferase;protein_id=OAR20000.1;transl_table=11
LYPH01000066.1	Genbank	gene	49955	50257	.	+	.	ID=gene-A8144_03380;Name=A8144_03380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03380
LYPH01000066.1	Protein Homology	CDS	49955	50257	.	+	0	ID=cds-OAR20001.1;Parent=gene-A8144_03380;Dbxref=NCBI_GP:OAR20001.1;Name=OAR20001.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908761.1;locus_tag=A8144_03380;product=hypothetical protein;protein_id=OAR20001.1;transl_table=11
LYPH01000066.1	Genbank	gene	50516	51202	.	+	.	ID=gene-A8144_03385;Name=A8144_03385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03385
LYPH01000066.1	Protein Homology	CDS	50516	51202	.	+	0	ID=cds-OAR20002.1;Parent=gene-A8144_03385;Dbxref=NCBI_GP:OAR20002.1;Name=OAR20002.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBC6.1;locus_tag=A8144_03385;product=fatty acid-binding protein;protein_id=OAR20002.1;transl_table=11
LYPH01000066.1	Genbank	gene	51534	51743	.	+	.	ID=gene-A8144_03390;Name=A8144_03390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03390
LYPH01000066.1	GeneMarkS+	CDS	51534	51743	.	+	0	ID=cds-OAR20003.1;Parent=gene-A8144_03390;Dbxref=NCBI_GP:OAR20003.1;Name=OAR20003.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03390;product=hypothetical protein;protein_id=OAR20003.1;transl_table=11
LYPH01000066.1	Genbank	gene	52507	52746	.	-	.	ID=gene-A8144_03395;Name=A8144_03395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03395
LYPH01000066.1	Protein Homology	CDS	52507	52746	.	-	0	ID=cds-OAR20004.1;Parent=gene-A8144_03395;Dbxref=NCBI_GP:OAR20004.1;Name=OAR20004.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908763.1;locus_tag=A8144_03395;product=hypothetical protein;protein_id=OAR20004.1;transl_table=11
LYPH01000066.1	Genbank	gene	52908	53159	.	+	.	ID=gene-A8144_03400;Name=A8144_03400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03400
LYPH01000066.1	GeneMarkS+	CDS	52908	53159	.	+	0	ID=cds-OAR20005.1;Parent=gene-A8144_03400;Dbxref=NCBI_GP:OAR20005.1;Name=OAR20005.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03400;product=hypothetical protein;protein_id=OAR20005.1;transl_table=11
LYPH01000066.1	Genbank	gene	54929	56029	.	+	.	ID=gene-A8144_03405;Name=A8144_03405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03405
LYPH01000066.1	Protein Homology	CDS	54929	56029	.	+	0	ID=cds-OAR20006.1;Parent=gene-A8144_03405;Dbxref=NCBI_GP:OAR20006.1;Name=OAR20006.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012634445.1;locus_tag=A8144_03405;product=glycine cleavage system protein T;protein_id=OAR20006.1;transl_table=11
LYPH01000066.1	Genbank	gene	56198	56386	.	+	.	ID=gene-A8144_03410;Name=A8144_03410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03410
LYPH01000066.1	Protein Homology	CDS	56198	56386	.	+	0	ID=cds-OAR20007.1;Parent=gene-A8144_03410;Dbxref=NCBI_GP:OAR20007.1;Name=OAR20007.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011782251.1;locus_tag=A8144_03410;product=hypothetical protein;protein_id=OAR20007.1;transl_table=11
LYPH01000066.1	Genbank	gene	56480	57574	.	-	.	ID=gene-A8144_03415;Name=A8144_03415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03415
LYPH01000066.1	Protein Homology	CDS	56480	57574	.	-	0	ID=cds-OAR20008.1;Parent=gene-A8144_03415;Dbxref=NCBI_GP:OAR20008.1;Name=OAR20008.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014000437.1;locus_tag=A8144_03415;product=phosphoribosylformylglycinamidine cyclo-ligase;protein_id=OAR20008.1;transl_table=11
LYPH01000066.1	Genbank	gene	57674	59221	.	-	.	ID=gene-A8144_03420;Name=A8144_03420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03420
LYPH01000066.1	Protein Homology	CDS	57674	59221	.	-	0	ID=cds-OAR20009.1;Parent=gene-A8144_03420;Dbxref=NCBI_GP:OAR20009.1;Name=OAR20009.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003875798.1;locus_tag=A8144_03420;product=amidophosphoribosyltransferase;protein_id=OAR20009.1;transl_table=11
LYPH01000066.1	Genbank	gene	59356	59751	.	-	.	ID=gene-A8144_03425;Name=A8144_03425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03425
LYPH01000066.1	Protein Homology	CDS	59356	59751	.	-	0	ID=cds-OAR20010.1;Parent=gene-A8144_03425;Dbxref=NCBI_GP:OAR20010.1;Name=OAR20010.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908768.1;locus_tag=A8144_03425;product=hypothetical protein;protein_id=OAR20010.1;transl_table=11
LYPH01000066.1	Genbank	pseudogene	59771	60961	.	+	.	ID=gene-A8144_03430;Name=A8144_03430;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03430;pseudo=true
LYPH01000066.1	Protein Homology	CDS	59771	60961	.	+	0	ID=cds-A8144_03430;Parent=gene-A8144_03430;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_006242651.1;locus_tag=A8144_03430;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000066.1	Genbank	gene	61383	63011	.	+	.	ID=gene-A8144_03435;Name=A8144_03435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03435
LYPH01000066.1	Protein Homology	CDS	61383	63011	.	+	0	ID=cds-OAR20011.1;Parent=gene-A8144_03435;Dbxref=NCBI_GP:OAR20011.1;Name=OAR20011.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q50025.1;locus_tag=A8144_03435;product=sugar phosphotransferase;protein_id=OAR20011.1;transl_table=11
LYPH01000066.1	Genbank	gene	62926	63879	.	-	.	ID=gene-A8144_03440;Name=A8144_03440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03440
LYPH01000066.1	Protein Homology	CDS	62926	63879	.	-	0	ID=cds-OAR20012.1;Parent=gene-A8144_03440;Dbxref=NCBI_GP:OAR20012.1;Name=OAR20012.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908770.1;locus_tag=A8144_03440;product=phosphodiesterase;protein_id=OAR20012.1;transl_table=11
LYPH01000066.1	Genbank	gene	64012	66276	.	-	.	ID=gene-A8144_03445;Name=A8144_03445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03445
LYPH01000066.1	Protein Homology	CDS	64012	66276	.	-	0	ID=cds-OAR20013.1;Parent=gene-A8144_03445;Dbxref=NCBI_GP:OAR20013.1;Name=OAR20013.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q50023.1;locus_tag=A8144_03445;product=phosphoribosylformylglycinamidine synthase II;protein_id=OAR20013.1;transl_table=11
LYPH01000066.1	Genbank	gene	67128	68459	.	-	.	ID=gene-A8144_03450;Name=A8144_03450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03450
LYPH01000066.1	Protein Homology	CDS	67128	68459	.	-	0	ID=cds-OAR20014.1;Parent=gene-A8144_03450;Dbxref=NCBI_GP:OAR20014.1;Name=OAR20014.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908772.1;locus_tag=A8144_03450;product=M18 family aminopeptidase;protein_id=OAR20014.1;transl_table=11
LYPH01000066.1	Genbank	gene	68874	69065	.	+	.	ID=gene-A8144_03455;Name=A8144_03455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03455
LYPH01000066.1	GeneMarkS+	CDS	68874	69065	.	+	0	ID=cds-OAR20015.1;Parent=gene-A8144_03455;Dbxref=NCBI_GP:OAR20015.1;Name=OAR20015.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03455;product=hypothetical protein;protein_id=OAR20015.1;transl_table=11
LYPH01000066.1	Genbank	gene	70323	71000	.	+	.	ID=gene-A8144_03460;Name=A8144_03460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03460
LYPH01000066.1	GeneMarkS+	CDS	70323	71000	.	+	0	ID=cds-OAR20016.1;Parent=gene-A8144_03460;Dbxref=NCBI_GP:OAR20016.1;Name=OAR20016.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03460;product=hypothetical protein;protein_id=OAR20016.1;transl_table=11
LYPH01000066.1	Genbank	pseudogene	71706	72379	.	+	.	ID=gene-A8144_03465;Name=A8144_03465;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03465;pseudo=true
LYPH01000066.1	Protein Homology	CDS	71706	72379	.	+	0	ID=cds-A8144_03465;Parent=gene-A8144_03465;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003914630.1;locus_tag=A8144_03465;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000066.1	Genbank	gene	73064	73738	.	-	.	ID=gene-A8144_03470;Name=A8144_03470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03470
LYPH01000066.1	Protein Homology	CDS	73064	73738	.	-	0	ID=cds-OAR20017.1;Parent=gene-A8144_03470;Dbxref=NCBI_GP:OAR20017.1;Name=OAR20017.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011738743.1;locus_tag=A8144_03470;product=phosphoribosylformylglycinamidine synthase I;protein_id=OAR20017.1;transl_table=11
LYPH01000066.1	Genbank	gene	73735	73974	.	-	.	ID=gene-A8144_03475;Name=A8144_03475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03475
LYPH01000066.1	Protein Homology	CDS	73735	73974	.	-	0	ID=cds-OAR20018.1;Parent=gene-A8144_03475;Dbxref=NCBI_GP:OAR20018.1;Name=OAR20018.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007772609.1;locus_tag=A8144_03475;product=phosphoribosylformylglycinamidine synthase subunit PurS;protein_id=OAR20018.1;transl_table=11
LYPH01000066.1	Genbank	pseudogene	74768	76293	.	-	.	ID=gene-A8144_03480;Name=A8144_03480;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03480;pseudo=true
LYPH01000066.1	Protein Homology	CDS	74768	76293	.	-	0	ID=cds-A8144_03480;Parent=gene-A8144_03480;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015456168.1;locus_tag=A8144_03480;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000066.1	Genbank	pseudogene	76365	77050	.	-	.	ID=gene-A8144_03485;Name=A8144_03485;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03485;pseudo=true
LYPH01000066.1	Protein Homology	CDS	76365	77050	.	-	0	ID=cds-A8144_03485;Parent=gene-A8144_03485;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_018602192.1;locus_tag=A8144_03485;product=DUF2334 domain-containing protein;pseudo=true;transl_table=11
LYPH01000066.1	Genbank	pseudogene	77254	78843	.	+	.	ID=gene-A8144_03490;Name=A8144_03490;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03490;pseudo=true
LYPH01000066.1	Protein Homology	CDS	77254	78843	.	+	0	ID=cds-A8144_03490;Parent=gene-A8144_03490;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010948910.1;locus_tag=A8144_03490;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000066.1	Genbank	pseudogene	78840	79448	.	-	.	ID=gene-A8144_03495;Name=A8144_03495;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03495;pseudo=true
LYPH01000066.1	Protein Homology	CDS	78840	79448	.	-	0	ID=cds-A8144_03495;Parent=gene-A8144_03495;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012396436.1;locus_tag=A8144_03495;product=TetR family transcriptional regulator;pseudo=true;transl_table=11
LYPH01000066.1	Genbank	pseudogene	79544	79993	.	+	.	ID=gene-A8144_03500;Name=A8144_03500;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03500;pseudo=true
LYPH01000066.1	Protein Homology	CDS	79544	79993	.	+	0	ID=cds-A8144_03500;Parent=gene-A8144_03500;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003923230.1;locus_tag=A8144_03500;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000066.1	Genbank	gene	79919	82093	.	-	.	ID=gene-A8144_03505;Name=A8144_03505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03505
LYPH01000066.1	Protein Homology	CDS	79919	82093	.	-	0	ID=cds-OAR20019.1;Parent=gene-A8144_03505;Dbxref=NCBI_GP:OAR20019.1;Name=OAR20019.1;Note=PtrB%3B oligopeptidase that cleaves peptide bonds following arginine and lysine residues;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908775.1;locus_tag=A8144_03505;product=oligopeptidase B;protein_id=OAR20019.1;transl_table=11
LYPH01000066.1	Genbank	gene	82090	82983	.	-	.	ID=gene-A8144_03510;Name=A8144_03510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03510
LYPH01000066.1	Protein Homology	CDS	82090	82983	.	-	0	ID=cds-OAR20020.1;Parent=gene-A8144_03510;Dbxref=NCBI_GP:OAR20020.1;Name=OAR20020.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015357298.1;locus_tag=A8144_03510;product=phosphoribosylaminoimidazolesuccinocarboxamide synthase;protein_id=OAR20020.1;transl_table=11
LYPH01000066.1	Genbank	gene	83049	83669	.	+	.	ID=gene-A8144_03515;Name=A8144_03515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03515
LYPH01000066.1	Protein Homology	CDS	83049	83669	.	+	0	ID=cds-OAR20021.1;Parent=gene-A8144_03515;Dbxref=NCBI_GP:OAR20021.1;Name=OAR20021.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908777.1;locus_tag=A8144_03515;product=hypothetical protein;protein_id=OAR20021.1;transl_table=11
LYPH01000066.1	Genbank	gene	83695	83997	.	+	.	ID=gene-A8144_03520;Name=A8144_03520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03520
LYPH01000066.1	GeneMarkS+	CDS	83695	83997	.	+	0	ID=cds-OAR20022.1;Parent=gene-A8144_03520;Dbxref=NCBI_GP:OAR20022.1;Name=OAR20022.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03520;product=hypothetical protein;protein_id=OAR20022.1;transl_table=11
LYPH01000066.1	Genbank	gene	84582	86000	.	-	.	ID=gene-A8144_03525;Name=A8144_03525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03525
LYPH01000066.1	Protein Homology	CDS	84582	86000	.	-	0	ID=cds-OAR20029.1;Parent=gene-A8144_03525;Dbxref=NCBI_GP:OAR20029.1;Name=OAR20029.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003879873.1;locus_tag=A8144_03525;product=adenylosuccinate lyase;protein_id=OAR20029.1;transl_table=11
LYPH01000066.1	Genbank	pseudogene	86079	86850	.	+	.	ID=gene-A8144_03530;Name=A8144_03530;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03530;pseudo=true
LYPH01000066.1	Protein Homology	CDS	86079	86850	.	+	0	ID=cds-A8144_03530;Parent=gene-A8144_03530;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020730731.1;locus_tag=A8144_03530;product=GTP pyrophosphokinase;pseudo=true;transl_table=11
LYPH01000066.1	Genbank	pseudogene	86975	87609	.	-	.	ID=gene-A8144_03535;Name=A8144_03535;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03535;pseudo=true
LYPH01000066.1	Protein Homology	CDS	86975	87609	.	-	0	ID=cds-A8144_03535;Parent=gene-A8144_03535;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010948907.1;locus_tag=A8144_03535;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000066.1	Genbank	pseudogene	87867	88576	.	+	.	ID=gene-A8144_03540;Name=A8144_03540;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03540;pseudo=true
LYPH01000066.1	Protein Homology	CDS	87867	88576	.	+	0	ID=cds-A8144_03540;Parent=gene-A8144_03540;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020730730.1;locus_tag=A8144_03540;product=esterase;pseudo=true;transl_table=11
LYPH01000066.1	Genbank	pseudogene	88735	90308	.	+	.	ID=gene-A8144_03545;Name=A8144_03545;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03545;pseudo=true
LYPH01000066.1	Protein Homology	CDS	88735	90308	.	+	0	ID=cds-A8144_03545;Parent=gene-A8144_03545;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014379078.1;locus_tag=A8144_03545;product=gamma-glutamyltransferase;pseudo=true;transl_table=11
LYPH01000066.1	Genbank	gene	90396	91664	.	-	.	ID=gene-A8144_03550;Name=A8144_03550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03550
LYPH01000066.1	Protein Homology	CDS	90396	91664	.	-	0	ID=cds-OAR20023.1;Parent=gene-A8144_03550;Dbxref=NCBI_GP:OAR20023.1;Name=OAR20023.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q50144.1;locus_tag=A8144_03550;product=phosphoribosylamine--glycine ligase;protein_id=OAR20023.1;transl_table=11
LYPH01000066.1	Genbank	gene	92123	92368	.	-	.	ID=gene-A8144_03555;Name=A8144_03555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03555
LYPH01000066.1	GeneMarkS+	CDS	92123	92368	.	-	0	ID=cds-OAR20024.1;Parent=gene-A8144_03555;Dbxref=NCBI_GP:OAR20024.1;Name=OAR20024.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03555;product=hypothetical protein;protein_id=OAR20024.1;transl_table=11
LYPH01000066.1	Genbank	gene	92779	93063	.	+	.	ID=gene-A8144_03560;Name=A8144_03560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03560
LYPH01000066.1	GeneMarkS+	CDS	92779	93063	.	+	0	ID=cds-OAR20025.1;Parent=gene-A8144_03560;Dbxref=NCBI_GP:OAR20025.1;Name=OAR20025.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03560;product=hypothetical protein;protein_id=OAR20025.1;transl_table=11
LYPH01000066.1	Genbank	gene	93118	93330	.	+	.	ID=gene-A8144_03565;Name=A8144_03565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03565
LYPH01000066.1	GeneMarkS+	CDS	93118	93330	.	+	0	ID=cds-OAR20026.1;Parent=gene-A8144_03565;Dbxref=NCBI_GP:OAR20026.1;Name=OAR20026.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03565;product=hypothetical protein;protein_id=OAR20026.1;transl_table=11
##sequence-region LYPH01000067.1 1 17241
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000067.1	Genbank	region	1	17241	.	+	.	ID=LYPH01000067.1:1..17241;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000067.1	Genbank	gene	323	396	.	-	.	ID=gene-A8144_12665;Name=A8144_12665;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_12665
LYPH01000067.1	tRNAscan-SE	tRNA	323	396	.	-	.	ID=rna-A8144_12665;Parent=gene-A8144_12665;anticodon=(pos:complement(360..362));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_12665;product=tRNA-Met
LYPH01000067.1	tRNAscan-SE	exon	323	396	.	-	.	ID=exon-A8144_12665-1;Parent=rna-A8144_12665;anticodon=(pos:complement(360..362));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_12665;product=tRNA-Met
LYPH01000067.1	Genbank	gene	856	1200	.	-	.	ID=gene-A8144_12670;Name=A8144_12670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12670
LYPH01000067.1	Protein Homology	CDS	856	1200	.	-	0	ID=cds-OAR19966.1;Parent=gene-A8144_12670;Dbxref=NCBI_GP:OAR19966.1;Name=OAR19966.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908526.1;locus_tag=A8144_12670;product=hypothetical protein;protein_id=OAR19966.1;transl_table=11
LYPH01000067.1	Genbank	gene	1684	1875	.	-	.	ID=gene-A8144_12675;Name=A8144_12675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12675
LYPH01000067.1	GeneMarkS+	CDS	1684	1875	.	-	0	ID=cds-OAR19955.1;Parent=gene-A8144_12675;Dbxref=NCBI_GP:OAR19955.1;Name=OAR19955.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12675;product=hypothetical protein;protein_id=OAR19955.1;transl_table=11
LYPH01000067.1	Genbank	gene	3592	3807	.	+	.	ID=gene-A8144_12680;Name=A8144_12680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12680
LYPH01000067.1	Protein Homology	CDS	3592	3807	.	+	0	ID=cds-OAR19956.1;Parent=gene-A8144_12680;Dbxref=NCBI_GP:OAR19956.1;Name=OAR19956.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908527.1;locus_tag=A8144_12680;product=hypothetical protein;protein_id=OAR19956.1;transl_table=11
LYPH01000067.1	Genbank	gene	4376	4705	.	+	.	ID=gene-A8144_12685;Name=A8144_12685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12685
LYPH01000067.1	GeneMarkS+	CDS	4376	4705	.	+	0	ID=cds-OAR19957.1;Parent=gene-A8144_12685;Dbxref=NCBI_GP:OAR19957.1;Name=OAR19957.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12685;product=hypothetical protein;protein_id=OAR19957.1;transl_table=11
LYPH01000067.1	Genbank	gene	6150	6419	.	-	.	ID=gene-A8144_12690;Name=A8144_12690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12690
LYPH01000067.1	GeneMarkS+	CDS	6150	6419	.	-	0	ID=cds-OAR19958.1;Parent=gene-A8144_12690;Dbxref=NCBI_GP:OAR19958.1;Name=OAR19958.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12690;product=hypothetical protein;protein_id=OAR19958.1;transl_table=11
LYPH01000067.1	Genbank	pseudogene	6587	8041	.	-	.	ID=gene-A8144_12695;Name=A8144_12695;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_12695;pseudo=true
LYPH01000067.1	Protein Homology	CDS	6587	8041	.	-	0	ID=cds-A8144_12695;Parent=gene-A8144_12695;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005628443.1;locus_tag=A8144_12695;product=peptidase C69;pseudo=true;transl_table=11
LYPH01000067.1	Genbank	gene	8185	9090	.	+	.	ID=gene-A8144_12700;Name=A8144_12700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12700
LYPH01000067.1	Protein Homology	CDS	8185	9090	.	+	0	ID=cds-OAR19967.1;Parent=gene-A8144_12700;Dbxref=NCBI_GP:OAR19967.1;Name=OAR19967.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015628050.1;locus_tag=A8144_12700;product=sugar ABC transporter permease;protein_id=OAR19967.1;transl_table=11
LYPH01000067.1	Genbank	gene	9077	9901	.	+	.	ID=gene-A8144_12705;Name=A8144_12705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12705
LYPH01000067.1	Protein Homology	CDS	9077	9901	.	+	0	ID=cds-OAR19959.1;Parent=gene-A8144_12705;Dbxref=NCBI_GP:OAR19959.1;Name=OAR19959.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009954607.1;locus_tag=A8144_12705;product=sugar ABC transporter permease;protein_id=OAR19959.1;transl_table=11
LYPH01000067.1	Genbank	gene	9993	11333	.	+	.	ID=gene-A8144_12710;Name=A8144_12710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12710
LYPH01000067.1	Protein Homology	CDS	9993	11333	.	+	0	ID=cds-OAR19960.1;Parent=gene-A8144_12710;Dbxref=NCBI_GP:OAR19960.1;Name=OAR19960.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009954609.1;locus_tag=A8144_12710;product=sugar ABC transporter substrate-binding protein;protein_id=OAR19960.1;transl_table=11
LYPH01000067.1	Genbank	pseudogene	11330	12164	.	-	.	ID=gene-A8144_12715;Name=A8144_12715;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_12715;pseudo=true
LYPH01000067.1	Protein Homology	CDS	11330	12164	.	-	0	ID=cds-A8144_12715;Parent=gene-A8144_12715;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012395244.1;locus_tag=A8144_12715;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000067.1	Genbank	gene	12590	12862	.	-	.	ID=gene-A8144_12720;Name=A8144_12720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12720
LYPH01000067.1	GeneMarkS+	CDS	12590	12862	.	-	0	ID=cds-OAR19961.1;Parent=gene-A8144_12720;Dbxref=NCBI_GP:OAR19961.1;Name=OAR19961.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12720;product=hypothetical protein;protein_id=OAR19961.1;transl_table=11
LYPH01000067.1	Genbank	gene	12865	13047	.	-	.	ID=gene-A8144_12725;Name=A8144_12725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12725
LYPH01000067.1	GeneMarkS+	CDS	12865	13047	.	-	0	ID=cds-OAR19962.1;Parent=gene-A8144_12725;Dbxref=NCBI_GP:OAR19962.1;Name=OAR19962.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12725;product=hypothetical protein;protein_id=OAR19962.1;transl_table=11
LYPH01000067.1	Genbank	pseudogene	13541	14721	.	-	.	ID=gene-A8144_12730;Name=rocD;gbkey=Gene;gene=rocD;gene_biotype=pseudogene;locus_tag=A8144_12730;pseudo=true
LYPH01000067.1	Protein Homology	CDS	13541	14721	.	-	0	ID=cds-A8144_12730;Parent=gene-A8144_12730;Note=frameshifted%3B internal stop;gbkey=CDS;gene=rocD;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010949476.1;locus_tag=A8144_12730;product=ornithine--oxo-acid transaminase;pseudo=true;transl_table=11
LYPH01000067.1	Genbank	gene	15454	15663	.	+	.	ID=gene-A8144_12735;Name=A8144_12735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12735
LYPH01000067.1	GeneMarkS+	CDS	15454	15663	.	+	0	ID=cds-OAR19963.1;Parent=gene-A8144_12735;Dbxref=NCBI_GP:OAR19963.1;Name=OAR19963.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12735;product=hypothetical protein;protein_id=OAR19963.1;transl_table=11
LYPH01000067.1	Genbank	gene	16012	16224	.	+	.	ID=gene-A8144_12740;Name=A8144_12740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12740
LYPH01000067.1	GeneMarkS+	CDS	16012	16224	.	+	0	ID=cds-OAR19964.1;Parent=gene-A8144_12740;Dbxref=NCBI_GP:OAR19964.1;Name=OAR19964.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12740;product=hypothetical protein;protein_id=OAR19964.1;transl_table=11
LYPH01000067.1	Genbank	gene	16801	17061	.	-	.	ID=gene-A8144_12745;Name=A8144_12745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12745
LYPH01000067.1	GeneMarkS+	CDS	16801	17061	.	-	0	ID=cds-OAR19965.1;Parent=gene-A8144_12745;Dbxref=NCBI_GP:OAR19965.1;Name=OAR19965.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12745;product=hypothetical protein;protein_id=OAR19965.1;transl_table=11
##sequence-region LYPH01000068.1 1 16047
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000068.1	Genbank	region	1	16047	.	+	.	ID=LYPH01000068.1:1..16047;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000068.1	Genbank	gene	116	1075	.	-	.	ID=gene-A8144_12750;Name=A8144_12750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12750
LYPH01000068.1	Protein Homology	CDS	116	1075	.	-	0	ID=cds-OAR19944.1;Parent=gene-A8144_12750;Dbxref=NCBI_GP:OAR19944.1;Name=OAR19944.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907596.1;locus_tag=A8144_12750;product=UDP-glucose 4-epimerase;protein_id=OAR19944.1;transl_table=11
LYPH01000068.1	Genbank	gene	1104	2834	.	+	.	ID=gene-A8144_12755;Name=A8144_12755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12755
LYPH01000068.1	Protein Homology	CDS	1104	2834	.	+	0	ID=cds-OAR19953.1;Parent=gene-A8144_12755;Dbxref=NCBI_GP:OAR19953.1;Name=OAR19953.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014941199.1;locus_tag=A8144_12755;product=hypothetical protein;protein_id=OAR19953.1;transl_table=11
LYPH01000068.1	Genbank	gene	4148	4223	.	-	.	ID=gene-A8144_12760;Name=A8144_12760;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_12760
LYPH01000068.1	tRNAscan-SE	tRNA	4148	4223	.	-	.	ID=rna-A8144_12760;Parent=gene-A8144_12760;anticodon=(pos:complement(4188..4190));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_12760;product=tRNA-Thr
LYPH01000068.1	tRNAscan-SE	exon	4148	4223	.	-	.	ID=exon-A8144_12760-1;Parent=rna-A8144_12760;anticodon=(pos:complement(4188..4190));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_12760;product=tRNA-Thr
LYPH01000068.1	Genbank	gene	4302	5519	.	-	.	ID=gene-A8144_12765;Name=A8144_12765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12765
LYPH01000068.1	Protein Homology	CDS	4302	5519	.	-	0	ID=cds-OAR19945.1;Parent=gene-A8144_12765;Dbxref=NCBI_GP:OAR19945.1;Name=OAR19945.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907594.1;locus_tag=A8144_12765;product=DNA polymerase III subunit delta';protein_id=OAR19945.1;transl_table=11
LYPH01000068.1	Genbank	gene	5675	7267	.	+	.	ID=gene-A8144_12770;Name=A8144_12770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12770
LYPH01000068.1	Protein Homology	CDS	5675	7267	.	+	0	ID=cds-OAR19946.1;Parent=gene-A8144_12770;Dbxref=NCBI_GP:OAR19946.1;Name=OAR19946.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907593.1;locus_tag=A8144_12770;product=adenylyl cyclase;protein_id=OAR19946.1;transl_table=11
LYPH01000068.1	Genbank	gene	7248	10109	.	-	.	ID=gene-A8144_12775;Name=A8144_12775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12775
LYPH01000068.1	Protein Homology	CDS	7248	10109	.	-	0	ID=cds-OAR19947.1;Parent=gene-A8144_12775;Dbxref=NCBI_GP:OAR19947.1;Name=OAR19947.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011741856.1;locus_tag=A8144_12775;product=DNA topoisomerase I;protein_id=OAR19947.1;transl_table=11
LYPH01000068.1	Genbank	gene	10309	10911	.	-	.	ID=gene-A8144_12780;Name=A8144_12780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12780
LYPH01000068.1	Protein Homology	CDS	10309	10911	.	-	0	ID=cds-OAR19948.1;Parent=gene-A8144_12780;Dbxref=NCBI_GP:OAR19948.1;Name=OAR19948.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014941197.1;locus_tag=A8144_12780;product=hypothetical protein;protein_id=OAR19948.1;transl_table=11
LYPH01000068.1	Genbank	gene	11023	11226	.	-	.	ID=gene-A8144_12785;Name=A8144_12785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12785
LYPH01000068.1	Protein Homology	CDS	11023	11226	.	-	0	ID=cds-OAR19954.1;Parent=gene-A8144_12785;Dbxref=NCBI_GP:OAR19954.1;Name=OAR19954.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_006243848.1;locus_tag=A8144_12785;product=cold-shock protein;protein_id=OAR19954.1;transl_table=11
LYPH01000068.1	Genbank	gene	11898	12227	.	+	.	ID=gene-A8144_12790;Name=A8144_12790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12790
LYPH01000068.1	GeneMarkS+	CDS	11898	12227	.	+	0	ID=cds-OAR19949.1;Parent=gene-A8144_12790;Dbxref=NCBI_GP:OAR19949.1;Name=OAR19949.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12790;product=hypothetical protein;protein_id=OAR19949.1;transl_table=11
LYPH01000068.1	Genbank	gene	12290	12646	.	-	.	ID=gene-A8144_12795;Name=A8144_12795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12795
LYPH01000068.1	GeneMarkS+	CDS	12290	12646	.	-	0	ID=cds-OAR19950.1;Parent=gene-A8144_12795;Dbxref=NCBI_GP:OAR19950.1;Name=OAR19950.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12795;product=hypothetical protein;protein_id=OAR19950.1;transl_table=11
LYPH01000068.1	Genbank	gene	13370	13666	.	-	.	ID=gene-A8144_12800;Name=A8144_12800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12800
LYPH01000068.1	GeneMarkS+	CDS	13370	13666	.	-	0	ID=cds-OAR19951.1;Parent=gene-A8144_12800;Dbxref=NCBI_GP:OAR19951.1;Name=OAR19951.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12800;product=hypothetical protein;protein_id=OAR19951.1;transl_table=11
LYPH01000068.1	Genbank	gene	14407	14658	.	-	.	ID=gene-A8144_12805;Name=A8144_12805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12805
LYPH01000068.1	GeneMarkS+	CDS	14407	14658	.	-	0	ID=cds-OAR19952.1;Parent=gene-A8144_12805;Dbxref=NCBI_GP:OAR19952.1;Name=OAR19952.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12805;product=hypothetical protein;protein_id=OAR19952.1;transl_table=11
##sequence-region LYPH01000069.1 1 32691
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000069.1	Genbank	region	1	32691	.	+	.	ID=LYPH01000069.1:1..32691;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000069.1	Genbank	gene	3	344	.	-	.	ID=gene-A8144_12810;Name=A8144_12810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12810
LYPH01000069.1	Protein Homology	CDS	3	344	.	-	0	ID=cds-OAR19920.1;Parent=gene-A8144_12810;Dbxref=NCBI_GP:OAR19920.1;Name=OAR19920.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907599.1;locus_tag=A8144_12810;product=hypothetical protein;protein_id=OAR19920.1;transl_table=11
LYPH01000069.1	Genbank	gene	358	1077	.	-	.	ID=gene-A8144_12815;Name=A8144_12815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12815
LYPH01000069.1	Protein Homology	CDS	358	1077	.	-	0	ID=cds-OAR19939.1;Parent=gene-A8144_12815;Dbxref=NCBI_GP:OAR19939.1;Name=OAR19939.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907598.1;locus_tag=A8144_12815;product=glycosyl transferase;protein_id=OAR19939.1;transl_table=11
LYPH01000069.1	Genbank	gene	1168	1362	.	+	.	ID=gene-A8144_12820;Name=A8144_12820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12820
LYPH01000069.1	GeneMarkS+	CDS	1168	1362	.	+	0	ID=cds-OAR19921.1;Parent=gene-A8144_12820;Dbxref=NCBI_GP:OAR19921.1;Name=OAR19921.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12820;product=hypothetical protein;protein_id=OAR19921.1;transl_table=11
LYPH01000069.1	Genbank	gene	1389	1604	.	-	.	ID=gene-A8144_12825;Name=A8144_12825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12825
LYPH01000069.1	GeneMarkS+	CDS	1389	1604	.	-	0	ID=cds-OAR19922.1;Parent=gene-A8144_12825;Dbxref=NCBI_GP:OAR19922.1;Name=OAR19922.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12825;product=hypothetical protein;protein_id=OAR19922.1;transl_table=11
LYPH01000069.1	Genbank	gene	2351	3421	.	+	.	ID=gene-A8144_12830;Name=A8144_12830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12830
LYPH01000069.1	Protein Homology	CDS	2351	3421	.	+	0	ID=cds-OAR19923.1;Parent=gene-A8144_12830;Dbxref=NCBI_GP:OAR19923.1;Name=OAR19923.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907597.1;locus_tag=A8144_12830;product=hypothetical protein;protein_id=OAR19923.1;transl_table=11
LYPH01000069.1	Genbank	gene	4185	5021	.	-	.	ID=gene-A8144_12835;Name=A8144_12835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12835
LYPH01000069.1	Protein Homology	CDS	4185	5021	.	-	0	ID=cds-OAR19940.1;Parent=gene-A8144_12835;Dbxref=NCBI_GP:OAR19940.1;Name=OAR19940.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020730370.1;locus_tag=A8144_12835;product=hypothetical protein;protein_id=OAR19940.1;transl_table=11
LYPH01000069.1	Genbank	gene	5033	7207	.	-	.	ID=gene-A8144_12840;Name=A8144_12840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12840
LYPH01000069.1	Protein Homology	CDS	5033	7207	.	-	0	ID=cds-OAR19941.1;Parent=gene-A8144_12840;Dbxref=NCBI_GP:OAR19941.1;Name=OAR19941.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907963.1;locus_tag=A8144_12840;product=cobalt ABC transporter ATP-binding protein;protein_id=OAR19941.1;transl_table=11
LYPH01000069.1	Genbank	gene	7361	7630	.	-	.	ID=gene-A8144_12845;Name=A8144_12845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12845
LYPH01000069.1	GeneMarkS+	CDS	7361	7630	.	-	0	ID=cds-OAR19924.1;Parent=gene-A8144_12845;Dbxref=NCBI_GP:OAR19924.1;Name=OAR19924.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12845;product=hypothetical protein;protein_id=OAR19924.1;transl_table=11
LYPH01000069.1	Genbank	gene	8432	9013	.	+	.	ID=gene-A8144_12850;Name=A8144_12850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12850
LYPH01000069.1	Protein Homology	CDS	8432	9013	.	+	0	ID=cds-OAR19925.1;Parent=gene-A8144_12850;Dbxref=NCBI_GP:OAR19925.1;Name=OAR19925.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907962.1;locus_tag=A8144_12850;product=hypothetical protein;protein_id=OAR19925.1;transl_table=11
LYPH01000069.1	Genbank	gene	9001	10554	.	-	.	ID=gene-A8144_12855;Name=A8144_12855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12855
LYPH01000069.1	Protein Homology	CDS	9001	10554	.	-	0	ID=cds-OAR19926.1;Parent=gene-A8144_12855;Dbxref=NCBI_GP:OAR19926.1;Name=OAR19926.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907961.1;locus_tag=A8144_12855;product=MFS transporter;protein_id=OAR19926.1;transl_table=11
LYPH01000069.1	Genbank	pseudogene	10715	11202	.	-	.	ID=gene-A8144_12860;Name=A8144_12860;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_12860;pseudo=true
LYPH01000069.1	Protein Homology	CDS	10715	11202	.	-	0	ID=cds-A8144_12860;Parent=gene-A8144_12860;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003878272.1;locus_tag=A8144_12860;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000069.1	Genbank	gene	11327	12562	.	-	.	ID=gene-A8144_12865;Name=A8144_12865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12865
LYPH01000069.1	Protein Homology	CDS	11327	12562	.	-	0	ID=cds-OAR19942.1;Parent=gene-A8144_12865;Dbxref=NCBI_GP:OAR19942.1;Name=OAR19942.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907960.1;locus_tag=A8144_12865;product=cysteine desulfurase;protein_id=OAR19942.1;transl_table=11
LYPH01000069.1	Genbank	gene	13218	14141	.	-	.	ID=gene-A8144_12870;Name=A8144_12870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12870
LYPH01000069.1	Protein Homology	CDS	13218	14141	.	-	0	ID=cds-OAR19927.1;Parent=gene-A8144_12870;Dbxref=NCBI_GP:OAR19927.1;Name=OAR19927.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907959.1;locus_tag=A8144_12870;product=hypothetical protein;protein_id=OAR19927.1;transl_table=11
LYPH01000069.1	Genbank	gene	14524	15828	.	+	.	ID=gene-A8144_12875;Name=A8144_12875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12875
LYPH01000069.1	Protein Homology	CDS	14524	15828	.	+	0	ID=cds-OAR19928.1;Parent=gene-A8144_12875;Dbxref=NCBI_GP:OAR19928.1;Name=OAR19928.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907958.1;locus_tag=A8144_12875;product=TQXA domain-containing protein;protein_id=OAR19928.1;transl_table=11
LYPH01000069.1	Genbank	gene	15825	16757	.	+	.	ID=gene-A8144_12880;Name=A8144_12880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12880
LYPH01000069.1	Protein Homology	CDS	15825	16757	.	+	0	ID=cds-OAR19929.1;Parent=gene-A8144_12880;Dbxref=NCBI_GP:OAR19929.1;Name=OAR19929.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014711373.1;locus_tag=A8144_12880;product=cysteine synthase A;protein_id=OAR19929.1;transl_table=11
LYPH01000069.1	Genbank	gene	16760	17443	.	+	.	ID=gene-A8144_12885;Name=A8144_12885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12885
LYPH01000069.1	Protein Homology	CDS	16760	17443	.	+	0	ID=cds-OAR19930.1;Parent=gene-A8144_12885;Dbxref=NCBI_GP:OAR19930.1;Name=OAR19930.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907956.1;locus_tag=A8144_12885;product=serine O-acetyltransferase;protein_id=OAR19930.1;transl_table=11
LYPH01000069.1	Genbank	gene	17726	17971	.	-	.	ID=gene-A8144_12890;Name=A8144_12890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12890
LYPH01000069.1	GeneMarkS+	CDS	17726	17971	.	-	0	ID=cds-OAR19931.1;Parent=gene-A8144_12890;Dbxref=NCBI_GP:OAR19931.1;Name=OAR19931.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12890;product=hypothetical protein;protein_id=OAR19931.1;transl_table=11
LYPH01000069.1	Genbank	pseudogene	18033	18395	.	-	.	ID=gene-A8144_12895;Name=A8144_12895;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_12895;pseudo=true
LYPH01000069.1	GeneMarkS+	CDS	18033	18395	.	-	0	ID=cds-A8144_12895;Parent=gene-A8144_12895;Note=too many ambiguous residues;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12895;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000069.1	Genbank	gene	18896	19279	.	-	.	ID=gene-A8144_12900;Name=A8144_12900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12900
LYPH01000069.1	Protein Homology	CDS	18896	19279	.	-	0	ID=cds-OAR19932.1;Parent=gene-A8144_12900;Dbxref=NCBI_GP:OAR19932.1;Name=OAR19932.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907955.1;locus_tag=A8144_12900;product=hypothetical protein;protein_id=OAR19932.1;transl_table=11
LYPH01000069.1	Genbank	gene	19410	19685	.	-	.	ID=gene-A8144_12905;Name=A8144_12905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12905
LYPH01000069.1	GeneMarkS+	CDS	19410	19685	.	-	0	ID=cds-OAR19933.1;Parent=gene-A8144_12905;Dbxref=NCBI_GP:OAR19933.1;Name=OAR19933.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12905;product=hypothetical protein;protein_id=OAR19933.1;transl_table=11
LYPH01000069.1	Genbank	gene	19669	19866	.	-	.	ID=gene-A8144_12910;Name=A8144_12910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12910
LYPH01000069.1	GeneMarkS+	CDS	19669	19866	.	-	0	ID=cds-OAR19934.1;Parent=gene-A8144_12910;Dbxref=NCBI_GP:OAR19934.1;Name=OAR19934.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12910;product=hypothetical protein;protein_id=OAR19934.1;transl_table=11
LYPH01000069.1	Genbank	pseudogene	20590	22203	.	+	.	ID=gene-A8144_12915;Name=A8144_12915;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_12915;pseudo=true
LYPH01000069.1	Protein Homology	CDS	20590	22203	.	+	0	ID=cds-A8144_12915;Parent=gene-A8144_12915;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_018601275.1;locus_tag=A8144_12915;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000069.1	Genbank	gene	22245	22317	.	-	.	ID=gene-A8144_12920;Name=A8144_12920;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_12920
LYPH01000069.1	tRNAscan-SE	tRNA	22245	22317	.	-	.	ID=rna-A8144_12920;Parent=gene-A8144_12920;anticodon=(pos:complement(22282..22284));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_12920;product=tRNA-Asn
LYPH01000069.1	tRNAscan-SE	exon	22245	22317	.	-	.	ID=exon-A8144_12920-1;Parent=rna-A8144_12920;anticodon=(pos:complement(22282..22284));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_12920;product=tRNA-Asn
LYPH01000069.1	Genbank	gene	22503	22760	.	+	.	ID=gene-A8144_12925;Name=A8144_12925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12925
LYPH01000069.1	Protein Homology	CDS	22503	22760	.	+	0	ID=cds-OAR19943.1;Parent=gene-A8144_12925;Dbxref=NCBI_GP:OAR19943.1;Name=OAR19943.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003872504.1;locus_tag=A8144_12925;product=hypothetical protein;protein_id=OAR19943.1;transl_table=11
LYPH01000069.1	Genbank	gene	22775	24703	.	-	.	ID=gene-A8144_12930;Name=A8144_12930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12930
LYPH01000069.1	Protein Homology	CDS	22775	24703	.	-	0	ID=cds-OAR19935.1;Parent=gene-A8144_12930;Dbxref=NCBI_GP:OAR19935.1;Name=OAR19935.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCG2.1;locus_tag=A8144_12930;product=DNA primase;protein_id=OAR19935.1;transl_table=11
LYPH01000069.1	Genbank	gene	24759	24974	.	-	.	ID=gene-A8144_12935;Name=A8144_12935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12935
LYPH01000069.1	GeneMarkS+	CDS	24759	24974	.	-	0	ID=cds-OAR19936.1;Parent=gene-A8144_12935;Dbxref=NCBI_GP:OAR19936.1;Name=OAR19936.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12935;product=hypothetical protein;protein_id=OAR19936.1;transl_table=11
LYPH01000069.1	Genbank	gene	25398	26687	.	-	.	ID=gene-A8144_12940;Name=A8144_12940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12940
LYPH01000069.1	Protein Homology	CDS	25398	26687	.	-	0	ID=cds-OAR19937.1;Parent=gene-A8144_12940;Dbxref=NCBI_GP:OAR19937.1;Name=OAR19937.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCG3.1;locus_tag=A8144_12940;product=deoxyguanosinetriphosphate triphosphohydrolase;protein_id=OAR19937.1;transl_table=11
LYPH01000069.1	Genbank	pseudogene	26833	28860	.	+	.	ID=gene-A8144_12945;Name=A8144_12945;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_12945;pseudo=true
LYPH01000069.1	Protein Homology	CDS	26833	28860	.	+	0	ID=cds-A8144_12945;Parent=gene-A8144_12945;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007770297.1;locus_tag=A8144_12945;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000069.1	Genbank	pseudogene	31299	31588	.	+	.	ID=gene-A8144_12950;Name=A8144_12950;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_12950;pseudo=true
LYPH01000069.1	Protein Homology	CDS	31299	31588	.	+	0	ID=cds-A8144_12950;Parent=gene-A8144_12950;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015294376.1;locus_tag=A8144_12950;product=transposase;pseudo=true;transl_table=11
LYPH01000069.1	Genbank	gene	31693	32091	.	+	.	ID=gene-A8144_12955;Name=A8144_12955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12955
LYPH01000069.1	GeneMarkS+	CDS	31693	32091	.	+	0	ID=cds-OAR19938.1;Parent=gene-A8144_12955;Dbxref=NCBI_GP:OAR19938.1;Name=OAR19938.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12955;product=hypothetical protein;protein_id=OAR19938.1;transl_table=11
##sequence-region LYPH01000070.1 1 14367
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000070.1	Genbank	region	1	14367	.	+	.	ID=LYPH01000070.1:1..14367;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000070.1	Genbank	gene	640	1497	.	-	.	ID=gene-A8144_12960;Name=A8144_12960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12960
LYPH01000070.1	Protein Homology	CDS	640	1497	.	-	0	ID=cds-OAR19908.1;Parent=gene-A8144_12960;Dbxref=NCBI_GP:OAR19908.1;Name=OAR19908.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908873.1;locus_tag=A8144_12960;product=hypothetical protein;protein_id=OAR19908.1;transl_table=11
LYPH01000070.1	Genbank	gene	1757	2794	.	+	.	ID=gene-A8144_12965;Name=A8144_12965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12965
LYPH01000070.1	Protein Homology	CDS	1757	2794	.	+	0	ID=cds-OAR19909.1;Parent=gene-A8144_12965;Dbxref=NCBI_GP:OAR19909.1;Name=OAR19909.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908874.1;locus_tag=A8144_12965;product=3-hydroxyisobutyryl-CoA hydrolase;protein_id=OAR19909.1;transl_table=11
LYPH01000070.1	Genbank	gene	2819	3592	.	+	.	ID=gene-A8144_12970;Name=A8144_12970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12970
LYPH01000070.1	Protein Homology	CDS	2819	3592	.	+	0	ID=cds-OAR19910.1;Parent=gene-A8144_12970;Dbxref=NCBI_GP:OAR19910.1;Name=OAR19910.1;Note=Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005144107.1;locus_tag=A8144_12970;product=enoyl-CoA hydratase;protein_id=OAR19910.1;transl_table=11
LYPH01000070.1	Genbank	gene	4131	4334	.	+	.	ID=gene-A8144_12975;Name=A8144_12975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12975
LYPH01000070.1	GeneMarkS+	CDS	4131	4334	.	+	0	ID=cds-OAR19911.1;Parent=gene-A8144_12975;Dbxref=NCBI_GP:OAR19911.1;Name=OAR19911.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_12975;product=hypothetical protein;protein_id=OAR19911.1;transl_table=11
LYPH01000070.1	Genbank	gene	5925	7010	.	-	.	ID=gene-A8144_12980;Name=A8144_12980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12980
LYPH01000070.1	Protein Homology	CDS	5925	7010	.	-	0	ID=cds-OAR19919.1;Parent=gene-A8144_12980;Dbxref=NCBI_GP:OAR19919.1;Name=OAR19919.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019249967.1;locus_tag=A8144_12980;product=S-(hydroxymethyl)mycothiol dehydrogenase;protein_id=OAR19919.1;transl_table=11
LYPH01000070.1	Genbank	gene	7172	8140	.	+	.	ID=gene-A8144_12985;Name=A8144_12985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12985
LYPH01000070.1	Protein Homology	CDS	7172	8140	.	+	0	ID=cds-OAR19912.1;Parent=gene-A8144_12985;Dbxref=NCBI_GP:OAR19912.1;Name=OAR19912.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908533.1;locus_tag=A8144_12985;product=methyltransferase;protein_id=OAR19912.1;transl_table=11
LYPH01000070.1	Genbank	gene	8140	8961	.	+	.	ID=gene-A8144_12990;Name=A8144_12990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12990
LYPH01000070.1	Protein Homology	CDS	8140	8961	.	+	0	ID=cds-OAR19913.1;Parent=gene-A8144_12990;Dbxref=NCBI_GP:OAR19913.1;Name=OAR19913.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908532.1;locus_tag=A8144_12990;product=serine hydrolase;protein_id=OAR19913.1;transl_table=11
LYPH01000070.1	Genbank	gene	9100	9612	.	+	.	ID=gene-A8144_12995;Name=A8144_12995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_12995
LYPH01000070.1	Protein Homology	CDS	9100	9612	.	+	0	ID=cds-OAR19914.1;Parent=gene-A8144_12995;Dbxref=NCBI_GP:OAR19914.1;Name=OAR19914.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015307824.1;locus_tag=A8144_12995;product=hypothetical protein;protein_id=OAR19914.1;transl_table=11
LYPH01000070.1	Genbank	pseudogene	9593	10564	.	-	.	ID=gene-A8144_13000;Name=A8144_13000;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13000;pseudo=true
LYPH01000070.1	Protein Homology	CDS	9593	10564	.	-	0	ID=cds-A8144_13000;Parent=gene-A8144_13000;Note=involved in the biosynthesis of phosphatidylinositol mannosides (PIMs)%3B the enzyme from Mycobacterium tuberculosis can phosphorylate a variety of amphipathic lipids%3B frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014379915.1;locus_tag=A8144_13000;product=diacylglycerol kinase;pseudo=true;transl_table=11
LYPH01000070.1	Genbank	pseudogene	10561	12162	.	-	.	ID=gene-A8144_13005;Name=A8144_13005;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13005;pseudo=true
LYPH01000070.1	Protein Homology	CDS	10561	12162	.	-	0	ID=cds-A8144_13005;Parent=gene-A8144_13005;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005628373.1;locus_tag=A8144_13005;product=flavoprotein;pseudo=true;transl_table=11
LYPH01000070.1	Genbank	pseudogene	12314	12776	.	+	.	ID=gene-A8144_13010;Name=A8144_13010;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13010;pseudo=true
LYPH01000070.1	Protein Homology	CDS	12314	12776	.	+	0	ID=cds-A8144_13010;Parent=gene-A8144_13010;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020725702.1;locus_tag=A8144_13010;product=TetR family transcriptional regulator;pseudo=true;transl_table=11
LYPH01000070.1	Genbank	gene	13238	13429	.	+	.	ID=gene-A8144_13015;Name=A8144_13015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13015
LYPH01000070.1	GeneMarkS+	CDS	13238	13429	.	+	0	ID=cds-OAR19915.1;Parent=gene-A8144_13015;Dbxref=NCBI_GP:OAR19915.1;Name=OAR19915.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13015;product=hypothetical protein;protein_id=OAR19915.1;transl_table=11
LYPH01000070.1	Genbank	gene	13442	13639	.	+	.	ID=gene-A8144_13020;Name=A8144_13020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13020
LYPH01000070.1	GeneMarkS+	CDS	13442	13639	.	+	0	ID=cds-OAR19916.1;Parent=gene-A8144_13020;Dbxref=NCBI_GP:OAR19916.1;Name=OAR19916.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13020;product=hypothetical protein;protein_id=OAR19916.1;transl_table=11
LYPH01000070.1	Genbank	gene	13690	14091	.	+	.	ID=gene-A8144_13025;Name=A8144_13025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13025
LYPH01000070.1	GeneMarkS+	CDS	13690	14091	.	+	0	ID=cds-OAR19917.1;Parent=gene-A8144_13025;Dbxref=NCBI_GP:OAR19917.1;Name=OAR19917.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13025;product=hypothetical protein;protein_id=OAR19917.1;transl_table=11
LYPH01000070.1	Genbank	gene	14063	14359	.	+	.	ID=gene-A8144_13030;Name=A8144_13030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13030
LYPH01000070.1	GeneMarkS+	CDS	14063	14359	.	+	0	ID=cds-OAR19918.1;Parent=gene-A8144_13030;Dbxref=NCBI_GP:OAR19918.1;Name=OAR19918.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13030;product=hypothetical protein;protein_id=OAR19918.1;transl_table=11
##sequence-region LYPH01000071.1 1 14270
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000071.1	Genbank	region	1	14270	.	+	.	ID=LYPH01000071.1:1..14270;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000071.1	Genbank	gene	55	306	.	-	.	ID=gene-A8144_13035;Name=A8144_13035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13035
LYPH01000071.1	GeneMarkS+	CDS	55	306	.	-	0	ID=cds-OAR19895.1;Parent=gene-A8144_13035;Dbxref=NCBI_GP:OAR19895.1;Name=OAR19895.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13035;product=hypothetical protein;protein_id=OAR19895.1;transl_table=11
LYPH01000071.1	Genbank	gene	522	779	.	-	.	ID=gene-A8144_13040;Name=A8144_13040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13040
LYPH01000071.1	GeneMarkS+	CDS	522	779	.	-	0	ID=cds-OAR19896.1;Parent=gene-A8144_13040;Dbxref=NCBI_GP:OAR19896.1;Name=OAR19896.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13040;product=hypothetical protein;protein_id=OAR19896.1;transl_table=11
LYPH01000071.1	Genbank	gene	1469	2020	.	-	.	ID=gene-A8144_13045;Name=A8144_13045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13045
LYPH01000071.1	Protein Homology	CDS	1469	2020	.	-	0	ID=cds-OAR19897.1;Parent=gene-A8144_13045;Dbxref=NCBI_GP:OAR19897.1;Name=OAR19897.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9ZBM7.1;locus_tag=A8144_13045;product=hypothetical protein;protein_id=OAR19897.1;transl_table=11
LYPH01000071.1	Genbank	gene	2390	2878	.	+	.	ID=gene-A8144_13050;Name=A8144_13050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13050
LYPH01000071.1	Protein Homology	CDS	2390	2878	.	+	0	ID=cds-OAR19898.1;Parent=gene-A8144_13050;Dbxref=NCBI_GP:OAR19898.1;Name=OAR19898.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007528440.1;locus_tag=A8144_13050;product=CarD family transcriptional regulator;protein_id=OAR19898.1;transl_table=11
LYPH01000071.1	Genbank	gene	2897	3622	.	+	.	ID=gene-A8144_13055;Name=A8144_13055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13055
LYPH01000071.1	Protein Homology	CDS	2897	3622	.	+	0	ID=cds-OAR19899.1;Parent=gene-A8144_13055;Dbxref=NCBI_GP:OAR19899.1;Name=OAR19899.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCW6.1;locus_tag=A8144_13055;product=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;protein_id=OAR19899.1;transl_table=11
LYPH01000071.1	Genbank	gene	3619	4095	.	+	.	ID=gene-A8144_13060;Name=A8144_13060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13060
LYPH01000071.1	Protein Homology	CDS	3619	4095	.	+	0	ID=cds-OAR19900.1;Parent=gene-A8144_13060;Dbxref=NCBI_GP:OAR19900.1;Name=OAR19900.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCW5.1;locus_tag=A8144_13060;product=2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase;protein_id=OAR19900.1;transl_table=11
LYPH01000071.1	Genbank	gene	4150	5571	.	+	.	ID=gene-A8144_13065;Name=A8144_13065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13065
LYPH01000071.1	Protein Homology	CDS	4150	5571	.	+	0	ID=cds-OAR19901.1;Parent=gene-A8144_13065;Dbxref=NCBI_GP:OAR19901.1;Name=OAR19901.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P57990.1;locus_tag=A8144_13065;product=cysteine--tRNA ligase;protein_id=OAR19901.1;transl_table=11
LYPH01000071.1	Genbank	gene	5561	6490	.	+	.	ID=gene-A8144_13070;Name=A8144_13070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13070
LYPH01000071.1	Protein Homology	CDS	5561	6490	.	+	0	ID=cds-OAR19902.1;Parent=gene-A8144_13070;Dbxref=NCBI_GP:OAR19902.1;Name=OAR19902.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:B8ZUB0.2;locus_tag=A8144_13070;product=23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;protein_id=OAR19902.1;transl_table=11
LYPH01000071.1	Genbank	gene	6892	7155	.	+	.	ID=gene-A8144_13075;Name=A8144_13075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13075
LYPH01000071.1	Protein Homology	CDS	6892	7155	.	+	0	ID=cds-OAR19903.1;Parent=gene-A8144_13075;Dbxref=NCBI_GP:OAR19903.1;Name=OAR19903.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907676.1;locus_tag=A8144_13075;product=hypothetical protein;protein_id=OAR19903.1;transl_table=11
LYPH01000071.1	Genbank	pseudogene	8887	9179	.	-	.	ID=gene-A8144_13080;Name=A8144_13080;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13080;pseudo=true
LYPH01000071.1	Protein Homology	CDS	8887	9179	.	-	0	ID=cds-A8144_13080;Parent=gene-A8144_13080;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_006241692.1;locus_tag=A8144_13080;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000071.1	Genbank	gene	9475	9825	.	-	.	ID=gene-A8144_13085;Name=A8144_13085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13085
LYPH01000071.1	GeneMarkS+	CDS	9475	9825	.	-	0	ID=cds-OAR19904.1;Parent=gene-A8144_13085;Dbxref=NCBI_GP:OAR19904.1;Name=OAR19904.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13085;product=hypothetical protein;protein_id=OAR19904.1;transl_table=11
LYPH01000071.1	Genbank	gene	10131	10325	.	-	.	ID=gene-A8144_13090;Name=A8144_13090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13090
LYPH01000071.1	GeneMarkS+	CDS	10131	10325	.	-	0	ID=cds-OAR19905.1;Parent=gene-A8144_13090;Dbxref=NCBI_GP:OAR19905.1;Name=OAR19905.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13090;product=hypothetical protein;protein_id=OAR19905.1;transl_table=11
LYPH01000071.1	Genbank	gene	13426	13656	.	+	.	ID=gene-A8144_13095;Name=A8144_13095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13095
LYPH01000071.1	GeneMarkS+	CDS	13426	13656	.	+	0	ID=cds-OAR19906.1;Parent=gene-A8144_13095;Dbxref=NCBI_GP:OAR19906.1;Name=OAR19906.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13095;product=hypothetical protein;protein_id=OAR19906.1;transl_table=11
LYPH01000071.1	Genbank	gene	13708	14130	.	-	.	ID=gene-A8144_13100;Name=A8144_13100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13100
LYPH01000071.1	GeneMarkS+	CDS	13708	14130	.	-	0	ID=cds-OAR19907.1;Parent=gene-A8144_13100;Dbxref=NCBI_GP:OAR19907.1;Name=OAR19907.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13100;product=hypothetical protein;protein_id=OAR19907.1;transl_table=11
##sequence-region LYPH01000072.1 1 13492
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000072.1	Genbank	region	1	13492	.	+	.	ID=LYPH01000072.1:1..13492;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000072.1	Genbank	gene	70	1566	.	+	.	ID=gene-A8144_13105;Name=A8144_13105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13105
LYPH01000072.1	Protein Homology	CDS	70	1566	.	+	0	ID=cds-OAR19883.1;Parent=gene-A8144_13105;Dbxref=NCBI_GP:OAR19883.1;Name=OAR19883.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908258.1;locus_tag=A8144_13105;product=L-asparagine permease;protein_id=OAR19883.1;transl_table=11
LYPH01000072.1	Genbank	gene	2701	3948	.	-	.	ID=gene-A8144_13110;Name=A8144_13110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13110
LYPH01000072.1	Protein Homology	CDS	2701	3948	.	-	0	ID=cds-OAR19890.1;Parent=gene-A8144_13110;Dbxref=NCBI_GP:OAR19890.1;Name=OAR19890.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014711525.1;locus_tag=A8144_13110;product=cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase;protein_id=OAR19890.1;transl_table=11
LYPH01000072.1	Genbank	gene	4051	4866	.	-	.	ID=gene-A8144_13115;Name=A8144_13115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13115
LYPH01000072.1	Protein Homology	CDS	4051	4866	.	-	0	ID=cds-OAR19884.1;Parent=gene-A8144_13115;Dbxref=NCBI_GP:OAR19884.1;Name=OAR19884.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46726.2;locus_tag=A8144_13115;product=3'(2')%2C5'-bisphosphate nucleotidase CysQ;protein_id=OAR19884.1;transl_table=11
LYPH01000072.1	Genbank	gene	4905	5693	.	-	.	ID=gene-A8144_13120;Name=A8144_13120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13120
LYPH01000072.1	Protein Homology	CDS	4905	5693	.	-	0	ID=cds-OAR19891.1;Parent=gene-A8144_13120;Dbxref=NCBI_GP:OAR19891.1;Name=OAR19891.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009957753.1;locus_tag=A8144_13120;product=phosphatidylinositol kinase;protein_id=OAR19891.1;transl_table=11
LYPH01000072.1	Genbank	gene	5704	6294	.	-	.	ID=gene-A8144_13125;Name=A8144_13125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13125
LYPH01000072.1	Protein Homology	CDS	5704	6294	.	-	0	ID=cds-OAR19885.1;Parent=gene-A8144_13125;Dbxref=NCBI_GP:OAR19885.1;Name=OAR19885.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908254.1;locus_tag=A8144_13125;product=hypothetical protein;protein_id=OAR19885.1;transl_table=11
LYPH01000072.1	Genbank	gene	6372	7124	.	-	.	ID=gene-A8144_13130;Name=A8144_13130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13130
LYPH01000072.1	Protein Homology	CDS	6372	7124	.	-	0	ID=cds-OAR19886.1;Parent=gene-A8144_13130;Dbxref=NCBI_GP:OAR19886.1;Name=OAR19886.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908253.1;locus_tag=A8144_13130;product=phosphoglycerate mutase;protein_id=OAR19886.1;transl_table=11
LYPH01000072.1	Genbank	gene	7121	7951	.	-	.	ID=gene-A8144_13135;Name=A8144_13135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13135
LYPH01000072.1	Protein Homology	CDS	7121	7951	.	-	0	ID=cds-OAR19892.1;Parent=gene-A8144_13135;Dbxref=NCBI_GP:OAR19892.1;Name=OAR19892.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014816362.1;locus_tag=A8144_13135;product=undecaprenyl-diphosphatase;protein_id=OAR19892.1;transl_table=11
LYPH01000072.1	Genbank	gene	8010	8312	.	-	.	ID=gene-A8144_13140;Name=A8144_13140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13140
LYPH01000072.1	Protein Homology	CDS	8010	8312	.	-	0	ID=cds-OAR19887.1;Parent=gene-A8144_13140;Dbxref=NCBI_GP:OAR19887.1;Name=OAR19887.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015627929.1;locus_tag=A8144_13140;product=hypothetical protein;protein_id=OAR19887.1;transl_table=11
LYPH01000072.1	Genbank	gene	8430	9479	.	+	.	ID=gene-A8144_13145;Name=A8144_13145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13145
LYPH01000072.1	Protein Homology	CDS	8430	9479	.	+	0	ID=cds-OAR19888.1;Parent=gene-A8144_13145;Dbxref=NCBI_GP:OAR19888.1;Name=OAR19888.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015290435.1;locus_tag=A8144_13145;product=hypothetical protein;protein_id=OAR19888.1;transl_table=11
LYPH01000072.1	Genbank	gene	9533	9730	.	+	.	ID=gene-A8144_13150;Name=A8144_13150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13150
LYPH01000072.1	Protein Homology	CDS	9533	9730	.	+	0	ID=cds-OAR19893.1;Parent=gene-A8144_13150;Dbxref=NCBI_GP:OAR19893.1;Name=OAR19893.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007170409.1;locus_tag=A8144_13150;product=dihydroorotate dehydrogenase;protein_id=OAR19893.1;transl_table=11
LYPH01000072.1	Genbank	gene	9751	10821	.	+	.	ID=gene-A8144_13155;Name=A8144_13155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13155
LYPH01000072.1	Protein Homology	CDS	9751	10821	.	+	0	ID=cds-OAR19894.1;Parent=gene-A8144_13155;Dbxref=NCBI_GP:OAR19894.1;Name=OAR19894.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015356116.1;locus_tag=A8144_13155;product=dihydroorotate dehydrogenase (quinone);protein_id=OAR19894.1;transl_table=11
LYPH01000072.1	Genbank	gene	13231	13473	.	+	.	ID=gene-A8144_13160;Name=A8144_13160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13160
LYPH01000072.1	Protein Homology	CDS	13231	13473	.	+	0	ID=cds-OAR19889.1;Parent=gene-A8144_13160;Dbxref=NCBI_GP:OAR19889.1;Name=OAR19889.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908248.1;locus_tag=A8144_13160;product=hypothetical protein;protein_id=OAR19889.1;transl_table=11
##sequence-region LYPH01000073.1 1 11861
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000073.1	Genbank	region	1	11861	.	+	.	ID=LYPH01000073.1:1..11861;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000073.1	Genbank	gene	146	1084	.	-	.	ID=gene-A8144_13165;Name=A8144_13165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13165
LYPH01000073.1	Protein Homology	CDS	146	1084	.	-	0	ID=cds-OAR19879.1;Parent=gene-A8144_13165;Dbxref=NCBI_GP:OAR19879.1;Name=OAR19879.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908640.1;locus_tag=A8144_13165;product=type I pantothenate kinase;protein_id=OAR19879.1;transl_table=11
LYPH01000073.1	Genbank	gene	1213	2493	.	+	.	ID=gene-A8144_13170;Name=A8144_13170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13170
LYPH01000073.1	Protein Homology	CDS	1213	2493	.	+	0	ID=cds-OAR19880.1;Parent=gene-A8144_13170;Dbxref=NCBI_GP:OAR19880.1;Name=OAR19880.1;Note=catalyzes the reaction of glycine with 5%2C10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008254337.1;locus_tag=A8144_13170;product=serine hydroxymethyltransferase;protein_id=OAR19880.1;transl_table=11
LYPH01000073.1	Genbank	gene	2550	3377	.	+	.	ID=gene-A8144_13175;Name=A8144_13175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13175
LYPH01000073.1	Protein Homology	CDS	2550	3377	.	+	0	ID=cds-OAR19873.1;Parent=gene-A8144_13175;Dbxref=NCBI_GP:OAR19873.1;Name=OAR19873.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908638.1;locus_tag=A8144_13175;product=acyl-ACP desaturase;protein_id=OAR19873.1;transl_table=11
LYPH01000073.1	Genbank	gene	3727	5028	.	+	.	ID=gene-A8144_13180;Name=A8144_13180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13180
LYPH01000073.1	Protein Homology	CDS	3727	5028	.	+	0	ID=cds-OAR19874.1;Parent=gene-A8144_13180;Dbxref=NCBI_GP:OAR19874.1;Name=OAR19874.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908637.1;locus_tag=A8144_13180;product=ATP-binding protein;protein_id=OAR19874.1;transl_table=11
LYPH01000073.1	Genbank	gene	5083	5958	.	+	.	ID=gene-A8144_13185;Name=A8144_13185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13185
LYPH01000073.1	Protein Homology	CDS	5083	5958	.	+	0	ID=cds-OAR19875.1;Parent=gene-A8144_13185;Dbxref=NCBI_GP:OAR19875.1;Name=OAR19875.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014381966.1;locus_tag=A8144_13185;product=carbohydrate degradation protein;protein_id=OAR19875.1;transl_table=11
LYPH01000073.1	Genbank	gene	6011	6370	.	+	.	ID=gene-A8144_13190;Name=A8144_13190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13190
LYPH01000073.1	Protein Homology	CDS	6011	6370	.	+	0	ID=cds-OAR19876.1;Parent=gene-A8144_13190;Dbxref=NCBI_GP:OAR19876.1;Name=OAR19876.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908635.1;locus_tag=A8144_13190;product=hypothetical protein;protein_id=OAR19876.1;transl_table=11
LYPH01000073.1	Genbank	gene	6832	7113	.	-	.	ID=gene-A8144_13195;Name=A8144_13195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13195
LYPH01000073.1	GeneMarkS+	CDS	6832	7113	.	-	0	ID=cds-OAR19877.1;Parent=gene-A8144_13195;Dbxref=NCBI_GP:OAR19877.1;Name=OAR19877.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13195;product=hypothetical protein;protein_id=OAR19877.1;transl_table=11
LYPH01000073.1	Genbank	gene	7599	9005	.	-	.	ID=gene-A8144_13200;Name=aspA;gbkey=Gene;gene=aspA;gene_biotype=protein_coding;locus_tag=A8144_13200
LYPH01000073.1	Protein Homology	CDS	7599	9005	.	-	0	ID=cds-OAR19881.1;Parent=gene-A8144_13200;Dbxref=NCBI_GP:OAR19881.1;Name=OAR19881.1;Note=catalyzes the formation of fumarate from aspartate;gbkey=CDS;gene=aspA;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908634.1;locus_tag=A8144_13200;product=aspartate ammonia-lyase;protein_id=OAR19881.1;transl_table=11
LYPH01000073.1	Genbank	gene	9032	10018	.	-	.	ID=gene-A8144_13205;Name=A8144_13205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13205
LYPH01000073.1	Protein Homology	CDS	9032	10018	.	-	0	ID=cds-OAR19882.1;Parent=gene-A8144_13205;Dbxref=NCBI_GP:OAR19882.1;Name=OAR19882.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_013827993.1;locus_tag=A8144_13205;product=fructose-1%2C6-bisphosphatase%2C class II;protein_id=OAR19882.1;transl_table=11
LYPH01000073.1	Genbank	gene	10098	10871	.	+	.	ID=gene-A8144_13210;Name=A8144_13210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13210
LYPH01000073.1	Protein Homology	CDS	10098	10871	.	+	0	ID=cds-OAR19878.1;Parent=gene-A8144_13210;Dbxref=NCBI_GP:OAR19878.1;Name=OAR19878.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908632.1;locus_tag=A8144_13210;product=hypothetical protein;protein_id=OAR19878.1;transl_table=11
LYPH01000073.1	Genbank	pseudogene	10899	11683	.	+	.	ID=gene-A8144_13215;Name=A8144_13215;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13215;pseudo=true
LYPH01000073.1	Protein Homology	CDS	10899	11683	.	+	0	ID=cds-A8144_13215;Parent=gene-A8144_13215;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011781798.1;locus_tag=A8144_13215;product=dienelactone hydrolase;pseudo=true;transl_table=11
##sequence-region LYPH01000074.1 1 11547
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000074.1	Genbank	region	1	11547	.	+	.	ID=LYPH01000074.1:1..11547;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000074.1	Genbank	gene	849	1136	.	-	.	ID=gene-A8144_13220;Name=A8144_13220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13220
LYPH01000074.1	GeneMarkS+	CDS	849	1136	.	-	0	ID=cds-OAR19864.1;Parent=gene-A8144_13220;Dbxref=NCBI_GP:OAR19864.1;Name=OAR19864.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13220;product=hypothetical protein;protein_id=OAR19864.1;transl_table=11
LYPH01000074.1	Genbank	gene	1636	2976	.	+	.	ID=gene-A8144_13225;Name=A8144_13225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13225
LYPH01000074.1	Protein Homology	CDS	1636	2976	.	+	0	ID=cds-OAR19872.1;Parent=gene-A8144_13225;Dbxref=NCBI_GP:OAR19872.1;Name=OAR19872.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46716.1;locus_tag=A8144_13225;product=glutamate-1-semialdehyde-2%2C1-aminomutase;protein_id=OAR19872.1;transl_table=11
LYPH01000074.1	Genbank	gene	2976	3584	.	+	.	ID=gene-A8144_13230;Name=A8144_13230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13230
LYPH01000074.1	Protein Homology	CDS	2976	3584	.	+	0	ID=cds-OAR19865.1;Parent=gene-A8144_13230;Dbxref=NCBI_GP:OAR19865.1;Name=OAR19865.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908882.1;locus_tag=A8144_13230;product=hypothetical protein;protein_id=OAR19865.1;transl_table=11
LYPH01000074.1	Genbank	gene	3581	4249	.	+	.	ID=gene-A8144_13235;Name=A8144_13235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13235
LYPH01000074.1	Protein Homology	CDS	3581	4249	.	+	0	ID=cds-OAR19866.1;Parent=gene-A8144_13235;Dbxref=NCBI_GP:OAR19866.1;Name=OAR19866.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908881.1;locus_tag=A8144_13235;product=alkyl hydroperoxide reductase;protein_id=OAR19866.1;transl_table=11
LYPH01000074.1	Genbank	gene	4246	5034	.	+	.	ID=gene-A8144_13240;Name=A8144_13240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13240
LYPH01000074.1	Protein Homology	CDS	4246	5034	.	+	0	ID=cds-OAR19867.1;Parent=gene-A8144_13240;Dbxref=NCBI_GP:OAR19867.1;Name=OAR19867.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007768165.1;locus_tag=A8144_13240;product=cytochrome C biogenesis protein ResC;protein_id=OAR19867.1;transl_table=11
LYPH01000074.1	Genbank	gene	5034	6659	.	+	.	ID=gene-A8144_13245;Name=A8144_13245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13245
LYPH01000074.1	Protein Homology	CDS	5034	6659	.	+	0	ID=cds-OAR19868.1;Parent=gene-A8144_13245;Dbxref=NCBI_GP:OAR19868.1;Name=OAR19868.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007167685.1;locus_tag=A8144_13245;product=cytochrome C biogenesis protein ResB;protein_id=OAR19868.1;transl_table=11
LYPH01000074.1	Genbank	gene	6656	7639	.	+	.	ID=gene-A8144_13250;Name=A8144_13250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13250
LYPH01000074.1	Protein Homology	CDS	6656	7639	.	+	0	ID=cds-OAR19869.1;Parent=gene-A8144_13250;Dbxref=NCBI_GP:OAR19869.1;Name=OAR19869.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908878.1;locus_tag=A8144_13250;product=c-type cytochrome biogenesis protein CcsB;protein_id=OAR19869.1;transl_table=11
LYPH01000074.1	Genbank	gene	8995	9330	.	+	.	ID=gene-A8144_13255;Name=A8144_13255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13255
LYPH01000074.1	Protein Homology	CDS	8995	9330	.	+	0	ID=cds-OAR19870.1;Parent=gene-A8144_13255;Dbxref=NCBI_GP:OAR19870.1;Name=OAR19870.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908877.1;locus_tag=A8144_13255;product=hypothetical protein;protein_id=OAR19870.1;transl_table=11
LYPH01000074.1	Genbank	gene	9398	10282	.	-	.	ID=gene-A8144_13260;Name=A8144_13260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13260
LYPH01000074.1	Protein Homology	CDS	9398	10282	.	-	0	ID=cds-OAR19871.1;Parent=gene-A8144_13260;Dbxref=NCBI_GP:OAR19871.1;Name=OAR19871.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O07134.1;locus_tag=A8144_13260;product=1%2C4-dihydroxy-2-naphthoate polyprenyltransferase;protein_id=OAR19871.1;transl_table=11
##sequence-region LYPH01000075.1 1 11266
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000075.1	Genbank	region	1	11266	.	+	.	ID=LYPH01000075.1:1..11266;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000075.1	Genbank	gene	1	1984	.	+	.	ID=gene-A8144_13265;Name=A8144_13265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13265;partial=true;start_range=.,1
LYPH01000075.1	Protein Homology	CDS	1	1984	.	+	1	ID=cds-OAR19855.1;Parent=gene-A8144_13265;Dbxref=NCBI_GP:OAR19855.1;Name=OAR19855.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9Z5I9.1;locus_tag=A8144_13265;partial=true;product=translation initiation factor IF-2;protein_id=OAR19855.1;start_range=.,1;transl_table=11
LYPH01000075.1	Genbank	gene	1998	2492	.	+	.	ID=gene-A8144_13270;Name=A8144_13270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13270
LYPH01000075.1	Protein Homology	CDS	1998	2492	.	+	0	ID=cds-OAR19856.1;Parent=gene-A8144_13270;Dbxref=NCBI_GP:OAR19856.1;Name=OAR19856.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9Z5I8.1;locus_tag=A8144_13270;product=ribosome-binding factor A;protein_id=OAR19856.1;transl_table=11
LYPH01000075.1	Genbank	pseudogene	2485	3447	.	+	.	ID=gene-A8144_13275;Name=A8144_13275;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13275;pseudo=true
LYPH01000075.1	Protein Homology	CDS	2485	3447	.	+	0	ID=cds-A8144_13275;Parent=gene-A8144_13275;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003914731.1;locus_tag=A8144_13275;product=phosphoesterase;pseudo=true;transl_table=11
LYPH01000075.1	Genbank	gene	3477	4919	.	-	.	ID=gene-A8144_13280;Name=A8144_13280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13280
LYPH01000075.1	Protein Homology	CDS	3477	4919	.	-	0	ID=cds-OAR19857.1;Parent=gene-A8144_13280;Dbxref=NCBI_GP:OAR19857.1;Name=OAR19857.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9Z5I7.2;locus_tag=A8144_13280;product=proline--tRNA ligase;protein_id=OAR19857.1;transl_table=11
LYPH01000075.1	Genbank	gene	5572	5814	.	+	.	ID=gene-A8144_13285;Name=A8144_13285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13285
LYPH01000075.1	GeneMarkS+	CDS	5572	5814	.	+	0	ID=cds-OAR19858.1;Parent=gene-A8144_13285;Dbxref=NCBI_GP:OAR19858.1;Name=OAR19858.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13285;product=hypothetical protein;protein_id=OAR19858.1;transl_table=11
LYPH01000075.1	Genbank	gene	6517	6720	.	+	.	ID=gene-A8144_13290;Name=A8144_13290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13290
LYPH01000075.1	GeneMarkS+	CDS	6517	6720	.	+	0	ID=cds-OAR19859.1;Parent=gene-A8144_13290;Dbxref=NCBI_GP:OAR19859.1;Name=OAR19859.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13290;product=hypothetical protein;protein_id=OAR19859.1;transl_table=11
LYPH01000075.1	Genbank	gene	7044	7346	.	-	.	ID=gene-A8144_13295;Name=A8144_13295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13295
LYPH01000075.1	GeneMarkS+	CDS	7044	7346	.	-	0	ID=cds-OAR19860.1;Parent=gene-A8144_13295;Dbxref=NCBI_GP:OAR19860.1;Name=OAR19860.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13295;product=hypothetical protein;protein_id=OAR19860.1;transl_table=11
LYPH01000075.1	Genbank	pseudogene	7823	8405	.	-	.	ID=gene-A8144_13300;Name=A8144_13300;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13300;pseudo=true
LYPH01000075.1	Protein Homology	CDS	7823	8405	.	-	0	ID=cds-A8144_13300;Parent=gene-A8144_13300;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007171487.1;locus_tag=A8144_13300;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000075.1	Genbank	gene	8576	9523	.	+	.	ID=gene-A8144_13305;Name=A8144_13305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13305
LYPH01000075.1	Protein Homology	CDS	8576	9523	.	+	0	ID=cds-OAR19863.1;Parent=gene-A8144_13305;Dbxref=NCBI_GP:OAR19863.1;Name=OAR19863.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005148704.1;locus_tag=A8144_13305;product=metallophosphoesterase;protein_id=OAR19863.1;transl_table=11
LYPH01000075.1	Genbank	gene	9520	10203	.	+	.	ID=gene-A8144_13310;Name=A8144_13310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13310
LYPH01000075.1	Protein Homology	CDS	9520	10203	.	+	0	ID=cds-OAR19861.1;Parent=gene-A8144_13310;Dbxref=NCBI_GP:OAR19861.1;Name=OAR19861.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908398.1;locus_tag=A8144_13310;product=4'-phosphopantetheinyl transferase;protein_id=OAR19861.1;transl_table=11
LYPH01000075.1	Genbank	gene	10200	11162	.	+	.	ID=gene-A8144_13315;Name=A8144_13315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13315
LYPH01000075.1	Protein Homology	CDS	10200	11162	.	+	0	ID=cds-OAR19862.1;Parent=gene-A8144_13315;Dbxref=NCBI_GP:OAR19862.1;Name=OAR19862.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9Z5I4.1;locus_tag=A8144_13315;product=tRNA pseudouridine(55) synthase TruB;protein_id=OAR19862.1;transl_table=11
##sequence-region LYPH01000076.1 1 10705
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000076.1	Genbank	region	1	10705	.	+	.	ID=LYPH01000076.1:1..10705;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000076.1	Genbank	pseudogene	691	1526	.	-	.	ID=gene-A8144_13320;Name=A8144_13320;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13320;pseudo=true
LYPH01000076.1	Protein Homology	CDS	691	1526	.	-	0	ID=cds-A8144_13320;Parent=gene-A8144_13320;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014941396.1;locus_tag=A8144_13320;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000076.1	Genbank	pseudogene	1811	2869	.	+	.	ID=gene-A8144_13325;Name=A8144_13325;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13325;pseudo=true
LYPH01000076.1	Protein Homology	CDS	1811	2869	.	+	0	ID=cds-A8144_13325;Parent=gene-A8144_13325;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009935460.1;locus_tag=A8144_13325;product=esterase;pseudo=true;transl_table=11
LYPH01000076.1	Genbank	gene	2939	4333	.	+	.	ID=gene-A8144_13330;Name=A8144_13330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13330
LYPH01000076.1	Protein Homology	CDS	2939	4333	.	+	0	ID=cds-OAR19844.1;Parent=gene-A8144_13330;Dbxref=NCBI_GP:OAR19844.1;Name=OAR19844.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908872.1;locus_tag=A8144_13330;product=cystathionine beta-synthase;protein_id=OAR19844.1;transl_table=11
LYPH01000076.1	Genbank	gene	4483	5232	.	+	.	ID=gene-A8144_13335;Name=A8144_13335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13335
LYPH01000076.1	Protein Homology	CDS	4483	5232	.	+	0	ID=cds-OAR19845.1;Parent=gene-A8144_13335;Dbxref=NCBI_GP:OAR19845.1;Name=OAR19845.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P41484.2;locus_tag=A8144_13335;product=hypothetical protein;protein_id=OAR19845.1;transl_table=11
LYPH01000076.1	Genbank	gene	5312	6478	.	+	.	ID=gene-A8144_13340;Name=A8144_13340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13340
LYPH01000076.1	Protein Homology	CDS	5312	6478	.	+	0	ID=cds-OAR19846.1;Parent=gene-A8144_13340;Dbxref=NCBI_GP:OAR19846.1;Name=OAR19846.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46807.1;locus_tag=A8144_13340;product=cystathionine gamma-synthase;protein_id=OAR19846.1;transl_table=11
LYPH01000076.1	Genbank	gene	6541	7035	.	-	.	ID=gene-A8144_13345;Name=A8144_13345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13345
LYPH01000076.1	Protein Homology	CDS	6541	7035	.	-	0	ID=cds-OAR19847.1;Parent=gene-A8144_13345;Dbxref=NCBI_GP:OAR19847.1;Name=OAR19847.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46808.2;locus_tag=A8144_13345;product=transcription elongation factor GreA;protein_id=OAR19847.1;transl_table=11
LYPH01000076.1	Genbank	gene	7259	7693	.	-	.	ID=gene-A8144_13350;Name=A8144_13350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13350
LYPH01000076.1	Protein Homology	CDS	7259	7693	.	-	0	ID=cds-OAR19848.1;Parent=gene-A8144_13350;Dbxref=NCBI_GP:OAR19848.1;Name=OAR19848.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908868.1;locus_tag=A8144_13350;product=hypothetical protein;protein_id=OAR19848.1;transl_table=11
LYPH01000076.1	Genbank	gene	7798	8670	.	+	.	ID=gene-A8144_13355;Name=A8144_13355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13355
LYPH01000076.1	Protein Homology	CDS	7798	8670	.	+	0	ID=cds-OAR19849.1;Parent=gene-A8144_13355;Dbxref=NCBI_GP:OAR19849.1;Name=OAR19849.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908867.1;locus_tag=A8144_13355;product=mycothiol conjugate amidase Mca;protein_id=OAR19849.1;transl_table=11
LYPH01000076.1	Genbank	gene	8667	8972	.	+	.	ID=gene-A8144_13360;Name=A8144_13360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13360
LYPH01000076.1	Protein Homology	CDS	8667	8972	.	+	0	ID=cds-OAR19850.1;Parent=gene-A8144_13360;Dbxref=NCBI_GP:OAR19850.1;Name=OAR19850.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908866.1;locus_tag=A8144_13360;product=hypothetical protein;protein_id=OAR19850.1;transl_table=11
LYPH01000076.1	Genbank	gene	9152	9382	.	+	.	ID=gene-A8144_13365;Name=A8144_13365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13365
LYPH01000076.1	GeneMarkS+	CDS	9152	9382	.	+	0	ID=cds-OAR19851.1;Parent=gene-A8144_13365;Dbxref=NCBI_GP:OAR19851.1;Name=OAR19851.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13365;product=hypothetical protein;protein_id=OAR19851.1;transl_table=11
LYPH01000076.1	Genbank	gene	9387	9611	.	+	.	ID=gene-A8144_13370;Name=A8144_13370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13370
LYPH01000076.1	GeneMarkS+	CDS	9387	9611	.	+	0	ID=cds-OAR19852.1;Parent=gene-A8144_13370;Dbxref=NCBI_GP:OAR19852.1;Name=OAR19852.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13370;product=hypothetical protein;protein_id=OAR19852.1;transl_table=11
LYPH01000076.1	Genbank	gene	9698	10009	.	+	.	ID=gene-A8144_13375;Name=A8144_13375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13375
LYPH01000076.1	GeneMarkS+	CDS	9698	10009	.	+	0	ID=cds-OAR19853.1;Parent=gene-A8144_13375;Dbxref=NCBI_GP:OAR19853.1;Name=OAR19853.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13375;product=hypothetical protein;protein_id=OAR19853.1;transl_table=11
LYPH01000076.1	Genbank	gene	10178	10390	.	-	.	ID=gene-A8144_13380;Name=A8144_13380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13380
LYPH01000076.1	GeneMarkS+	CDS	10178	10390	.	-	0	ID=cds-OAR19854.1;Parent=gene-A8144_13380;Dbxref=NCBI_GP:OAR19854.1;Name=OAR19854.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13380;product=hypothetical protein;protein_id=OAR19854.1;transl_table=11
##sequence-region LYPH01000077.1 1 139298
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000077.1	Genbank	region	1	139298	.	+	.	ID=LYPH01000077.1:1..139298;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000077.1	Genbank	gene	1	2581	.	-	.	ID=gene-A8144_03570;Name=A8144_03570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03570;partial=true;start_range=.,1
LYPH01000077.1	Protein Homology	CDS	1	2581	.	-	0	ID=cds-OAR19755.1;Parent=gene-A8144_03570;Dbxref=NCBI_GP:OAR19755.1;Name=OAR19755.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908366.1;locus_tag=A8144_03570;partial=true;product=aminopeptidase N;protein_id=OAR19755.1;start_range=.,1;transl_table=11
LYPH01000077.1	Genbank	gene	2713	3336	.	+	.	ID=gene-A8144_03575;Name=A8144_03575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03575
LYPH01000077.1	Protein Homology	CDS	2713	3336	.	+	0	ID=cds-OAR19756.1;Parent=gene-A8144_03575;Dbxref=NCBI_GP:OAR19756.1;Name=OAR19756.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908365.1;locus_tag=A8144_03575;product=disulfide bond formation protein DsbA;protein_id=OAR19756.1;transl_table=11
LYPH01000077.1	Genbank	gene	3386	3865	.	+	.	ID=gene-A8144_03580;Name=A8144_03580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03580
LYPH01000077.1	Protein Homology	CDS	3386	3865	.	+	0	ID=cds-OAR19757.1;Parent=gene-A8144_03580;Dbxref=NCBI_GP:OAR19757.1;Name=OAR19757.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019738062.1;locus_tag=A8144_03580;product=ribose-5-phosphate isomerase;protein_id=OAR19757.1;transl_table=11
LYPH01000077.1	Genbank	pseudogene	3875	4693	.	+	.	ID=gene-A8144_03585;Name=A8144_03585;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03585;pseudo=true
LYPH01000077.1	Protein Homology	CDS	3875	4693	.	+	0	ID=cds-A8144_03585;Parent=gene-A8144_03585;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014941616.1;locus_tag=A8144_03585;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000077.1	Genbank	gene	4731	4922	.	+	.	ID=gene-A8144_03590;Name=A8144_03590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03590
LYPH01000077.1	GeneMarkS+	CDS	4731	4922	.	+	0	ID=cds-OAR19758.1;Parent=gene-A8144_03590;Dbxref=NCBI_GP:OAR19758.1;Name=OAR19758.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03590;product=hypothetical protein;protein_id=OAR19758.1;transl_table=11
LYPH01000077.1	Genbank	gene	5956	6026	.	-	.	ID=gene-A8144_03595;Name=A8144_03595;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_03595
LYPH01000077.1	tRNAscan-SE	tRNA	5956	6026	.	-	.	ID=rna-A8144_03595;Parent=gene-A8144_03595;anticodon=(pos:complement(5992..5994));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_03595;product=tRNA-Gly
LYPH01000077.1	tRNAscan-SE	exon	5956	6026	.	-	.	ID=exon-A8144_03595-1;Parent=rna-A8144_03595;anticodon=(pos:complement(5992..5994));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_03595;product=tRNA-Gly
LYPH01000077.1	Genbank	gene	6162	6238	.	+	.	ID=gene-A8144_03600;Name=A8144_03600;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_03600
LYPH01000077.1	tRNAscan-SE	tRNA	6162	6238	.	+	.	ID=rna-A8144_03600;Parent=gene-A8144_03600;anticodon=(pos:6196..6198);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_03600;product=tRNA-Pro
LYPH01000077.1	tRNAscan-SE	exon	6162	6238	.	+	.	ID=exon-A8144_03600-1;Parent=rna-A8144_03600;anticodon=(pos:6196..6198);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_03600;product=tRNA-Pro
LYPH01000077.1	Genbank	gene	6271	7680	.	+	.	ID=gene-A8144_03605;Name=A8144_03605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03605
LYPH01000077.1	Protein Homology	CDS	6271	7680	.	+	0	ID=cds-OAR19759.1;Parent=gene-A8144_03605;Dbxref=NCBI_GP:OAR19759.1;Name=OAR19759.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBY2.1;locus_tag=A8144_03605;product=trigger factor;protein_id=OAR19759.1;transl_table=11
LYPH01000077.1	Genbank	gene	7813	8406	.	+	.	ID=gene-A8144_03610;Name=A8144_03610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03610
LYPH01000077.1	Protein Homology	CDS	7813	8406	.	+	0	ID=cds-OAR19834.1;Parent=gene-A8144_03610;Dbxref=NCBI_GP:OAR19834.1;Name=OAR19834.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007169488.1;locus_tag=A8144_03610;product=ATP-dependent Clp protease proteolytic subunit;protein_id=OAR19834.1;transl_table=11
LYPH01000077.1	Genbank	gene	8403	9047	.	+	.	ID=gene-A8144_03615;Name=clpP;gbkey=Gene;gene=clpP;gene_biotype=protein_coding;locus_tag=A8144_03615
LYPH01000077.1	Protein Homology	CDS	8403	9047	.	+	0	ID=cds-OAR19760.1;Parent=gene-A8144_03615;Dbxref=NCBI_GP:OAR19760.1;Name=OAR19760.1;Note=hydrolyzes proteins to small peptides%3B with the ATPase subunits ClpA or ClpX%2C ClpP degrades specific substrates;gbkey=CDS;gene=clpP;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBY4.1;locus_tag=A8144_03615;product=ATP-dependent Clp protease proteolytic subunit;protein_id=OAR19760.1;transl_table=11
LYPH01000077.1	Genbank	gene	9044	9925	.	-	.	ID=gene-A8144_03620;Name=A8144_03620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03620
LYPH01000077.1	Protein Homology	CDS	9044	9925	.	-	0	ID=cds-OAR19761.1;Parent=gene-A8144_03620;Dbxref=NCBI_GP:OAR19761.1;Name=OAR19761.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908360.1;locus_tag=A8144_03620;product=homocysteine S-methyltransferase;protein_id=OAR19761.1;transl_table=11
LYPH01000077.1	Genbank	gene	10198	11478	.	+	.	ID=gene-A8144_03625;Name=A8144_03625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03625
LYPH01000077.1	Protein Homology	CDS	10198	11478	.	+	0	ID=cds-OAR19762.1;Parent=gene-A8144_03625;Dbxref=NCBI_GP:OAR19762.1;Name=OAR19762.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014816688.1;locus_tag=A8144_03625;product=ATP-dependent protease ATP-binding subunit ClpX;protein_id=OAR19762.1;transl_table=11
LYPH01000077.1	Genbank	pseudogene	11941	13343	.	+	.	ID=gene-A8144_03630;Name=A8144_03630;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03630;pseudo=true
LYPH01000077.1	Protein Homology	CDS	11941	13343	.	+	0	ID=cds-A8144_03630;Parent=gene-A8144_03630;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005067099.1;locus_tag=A8144_03630;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000077.1	Genbank	pseudogene	13477	14549	.	+	.	ID=gene-A8144_03635;Name=A8144_03635;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03635;pseudo=true
LYPH01000077.1	Protein Homology	CDS	13477	14549	.	+	0	ID=cds-A8144_03635;Parent=gene-A8144_03635;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005258743.1;locus_tag=A8144_03635;product=2-oxoacid:ferredoxin oxidoreductase subunit beta;pseudo=true;transl_table=11
LYPH01000077.1	Genbank	pseudogene	14671	15169	.	+	.	ID=gene-A8144_03640;Name=A8144_03640;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03640;pseudo=true
LYPH01000077.1	Protein Homology	CDS	14671	15169	.	+	0	ID=cds-A8144_03640;Parent=gene-A8144_03640;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014382180.1;locus_tag=A8144_03640;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000077.1	Genbank	gene	17282	17527	.	+	.	ID=gene-A8144_03645;Name=A8144_03645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03645
LYPH01000077.1	GeneMarkS+	CDS	17282	17527	.	+	0	ID=cds-OAR19763.1;Parent=gene-A8144_03645;Dbxref=NCBI_GP:OAR19763.1;Name=OAR19763.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03645;product=hypothetical protein;protein_id=OAR19763.1;transl_table=11
LYPH01000077.1	Genbank	gene	18153	20813	.	+	.	ID=gene-A8144_03650;Name=A8144_03650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03650
LYPH01000077.1	Protein Homology	CDS	18153	20813	.	+	0	ID=cds-OAR19764.1;Parent=gene-A8144_03650;Dbxref=NCBI_GP:OAR19764.1;Name=OAR19764.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBY7.1;locus_tag=A8144_03650;product=valine--tRNA ligase;protein_id=OAR19764.1;transl_table=11
LYPH01000077.1	Genbank	gene	20810	22267	.	+	.	ID=gene-A8144_03655;Name=A8144_03655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03655
LYPH01000077.1	Protein Homology	CDS	20810	22267	.	+	0	ID=cds-OAR19765.1;Parent=gene-A8144_03655;Dbxref=NCBI_GP:OAR19765.1;Name=OAR19765.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908357.1;locus_tag=A8144_03655;product=dihydrofolate synthase;protein_id=OAR19765.1;transl_table=11
LYPH01000077.1	Genbank	gene	22264	22635	.	+	.	ID=gene-A8144_03660;Name=A8144_03660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03660
LYPH01000077.1	Protein Homology	CDS	22264	22635	.	+	0	ID=cds-OAR19766.1;Parent=gene-A8144_03660;Dbxref=NCBI_GP:OAR19766.1;Name=OAR19766.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908356.1;locus_tag=A8144_03660;product=hypothetical protein;protein_id=OAR19766.1;transl_table=11
LYPH01000077.1	Genbank	gene	22685	23095	.	+	.	ID=gene-A8144_03665;Name=A8144_03665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03665
LYPH01000077.1	Protein Homology	CDS	22685	23095	.	+	0	ID=cds-OAR19767.1;Parent=gene-A8144_03665;Dbxref=NCBI_GP:OAR19767.1;Name=OAR19767.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBZ0.1;locus_tag=A8144_03665;product=nucleoside-diphosphate kinase;protein_id=OAR19767.1;transl_table=11
LYPH01000077.1	Genbank	gene	23438	26212	.	+	.	ID=gene-A8144_03670;Name=A8144_03670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03670
LYPH01000077.1	Protein Homology	CDS	23438	26212	.	+	0	ID=cds-OAR19768.1;Parent=gene-A8144_03670;Dbxref=NCBI_GP:OAR19768.1;Name=OAR19768.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908354.1;locus_tag=A8144_03670;product=ribonuclease;protein_id=OAR19768.1;transl_table=11
LYPH01000077.1	Genbank	gene	26439	26750	.	+	.	ID=gene-A8144_03675;Name=A8144_03675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03675
LYPH01000077.1	Protein Homology	CDS	26439	26750	.	+	0	ID=cds-OAR19769.1;Parent=gene-A8144_03675;Dbxref=NCBI_GP:OAR19769.1;Name=OAR19769.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005628764.1;locus_tag=A8144_03675;product=50S ribosomal protein L21;protein_id=OAR19769.1;transl_table=11
LYPH01000077.1	Genbank	gene	26762	27028	.	+	.	ID=gene-A8144_03680;Name=A8144_03680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03680
LYPH01000077.1	Protein Homology	CDS	26762	27028	.	+	0	ID=cds-OAR19770.1;Parent=gene-A8144_03680;Dbxref=NCBI_GP:OAR19770.1;Name=OAR19770.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBZ3.1;locus_tag=A8144_03680;product=50S ribosomal protein L27;protein_id=OAR19770.1;transl_table=11
LYPH01000077.1	Genbank	gene	27143	28582	.	+	.	ID=gene-A8144_03685;Name=A8144_03685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03685
LYPH01000077.1	Protein Homology	CDS	27143	28582	.	+	0	ID=cds-OAR19771.1;Parent=gene-A8144_03685;Dbxref=NCBI_GP:OAR19771.1;Name=OAR19771.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBZ4.1;locus_tag=A8144_03685;product=GTPase ObgE;protein_id=OAR19771.1;transl_table=11
LYPH01000077.1	Genbank	gene	28586	29689	.	+	.	ID=gene-A8144_03690;Name=A8144_03690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03690
LYPH01000077.1	Protein Homology	CDS	28586	29689	.	+	0	ID=cds-OAR19772.1;Parent=gene-A8144_03690;Dbxref=NCBI_GP:OAR19772.1;Name=OAR19772.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBZ5.1;locus_tag=A8144_03690;product=glutamate 5-kinase;protein_id=OAR19772.1;transl_table=11
LYPH01000077.1	Genbank	gene	29906	31948	.	+	.	ID=gene-A8144_03695;Name=A8144_03695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03695
LYPH01000077.1	Protein Homology	CDS	29906	31948	.	+	0	ID=cds-OAR19773.1;Parent=gene-A8144_03695;Dbxref=NCBI_GP:OAR19773.1;Name=OAR19773.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010949541.1;locus_tag=A8144_03695;product=NAD(+) synthase;protein_id=OAR19773.1;transl_table=11
LYPH01000077.1	Genbank	gene	32310	32507	.	+	.	ID=gene-A8144_03700;Name=A8144_03700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03700
LYPH01000077.1	GeneMarkS+	CDS	32310	32507	.	+	0	ID=cds-OAR19774.1;Parent=gene-A8144_03700;Dbxref=NCBI_GP:OAR19774.1;Name=OAR19774.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03700;product=hypothetical protein;protein_id=OAR19774.1;transl_table=11
LYPH01000077.1	Genbank	pseudogene	32685	33468	.	-	.	ID=gene-A8144_03705;Name=A8144_03705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03705;pseudo=true
LYPH01000077.1	Protein Homology	CDS	32685	33468	.	-	0	ID=cds-A8144_03705;Parent=gene-A8144_03705;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003875877.1;locus_tag=A8144_03705;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000077.1	Genbank	gene	34308	34814	.	-	.	ID=gene-A8144_03710;Name=A8144_03710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03710
LYPH01000077.1	GeneMarkS+	CDS	34308	34814	.	-	0	ID=cds-OAR19775.1;Parent=gene-A8144_03710;Dbxref=NCBI_GP:OAR19775.1;Name=OAR19775.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03710;product=hypothetical protein;protein_id=OAR19775.1;transl_table=11
LYPH01000077.1	Genbank	pseudogene	35389	37374	.	+	.	ID=gene-A8144_03715;Name=A8144_03715;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03715;pseudo=true
LYPH01000077.1	Protein Homology	CDS	35389	37374	.	+	0	ID=cds-A8144_03715;Parent=gene-A8144_03715;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003902271.1;locus_tag=A8144_03715;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000077.1	Genbank	gene	38243	39502	.	+	.	ID=gene-A8144_03720;Name=A8144_03720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03720
LYPH01000077.1	Protein Homology	CDS	38243	39502	.	+	0	ID=cds-OAR19776.1;Parent=gene-A8144_03720;Dbxref=NCBI_GP:OAR19776.1;Name=OAR19776.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:B2HME9.1;locus_tag=A8144_03720;product=glutamate-5-semialdehyde dehydrogenase;protein_id=OAR19776.1;transl_table=11
LYPH01000077.1	Genbank	pseudogene	39552	40437	.	+	.	ID=gene-A8144_03725;Name=A8144_03725;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03725;pseudo=true
LYPH01000077.1	Protein Homology	CDS	39552	40437	.	+	0	ID=cds-A8144_03725;Parent=gene-A8144_03725;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014379687.1;locus_tag=A8144_03725;product=ATPase;pseudo=true;transl_table=11
LYPH01000077.1	Genbank	pseudogene	40468	41868	.	+	.	ID=gene-A8144_03730;Name=A8144_03730;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03730;pseudo=true
LYPH01000077.1	Protein Homology	CDS	40468	41868	.	+	0	ID=cds-A8144_03730;Parent=gene-A8144_03730;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011560918.1;locus_tag=A8144_03730;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000077.1	Genbank	gene	42662	43306	.	+	.	ID=gene-A8144_03735;Name=A8144_03735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03735
LYPH01000077.1	Protein Homology	CDS	42662	43306	.	+	0	ID=cds-OAR19777.1;Parent=gene-A8144_03735;Dbxref=NCBI_GP:OAR19777.1;Name=OAR19777.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBZ8.1;locus_tag=A8144_03735;product=nicotinic acid mononucleotide adenylyltransferase;protein_id=OAR19777.1;transl_table=11
LYPH01000077.1	Genbank	gene	43303	43692	.	+	.	ID=gene-A8144_03740;Name=A8144_03740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03740
LYPH01000077.1	Protein Homology	CDS	43303	43692	.	+	0	ID=cds-OAR19778.1;Parent=gene-A8144_03740;Dbxref=NCBI_GP:OAR19778.1;Name=OAR19778.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908346.1;locus_tag=A8144_03740;product=ribosome silencing factor;protein_id=OAR19778.1;transl_table=11
LYPH01000077.1	Genbank	gene	43692	44366	.	+	.	ID=gene-A8144_03745;Name=A8144_03745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03745
LYPH01000077.1	Protein Homology	CDS	43692	44366	.	+	0	ID=cds-OAR19779.1;Parent=gene-A8144_03745;Dbxref=NCBI_GP:OAR19779.1;Name=OAR19779.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_016706144.1;locus_tag=A8144_03745;product=histidine phosphatase;protein_id=OAR19779.1;transl_table=11
LYPH01000077.1	Genbank	gene	44356	45099	.	+	.	ID=gene-A8144_03750;Name=A8144_03750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03750
LYPH01000077.1	Protein Homology	CDS	44356	45099	.	+	0	ID=cds-OAR19780.1;Parent=gene-A8144_03750;Dbxref=NCBI_GP:OAR19780.1;Name=OAR19780.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015293679.1;locus_tag=A8144_03750;product=lysophospholipase;protein_id=OAR19780.1;transl_table=11
LYPH01000077.1	Genbank	pseudogene	45182	45919	.	+	.	ID=gene-A8144_03755;Name=A8144_03755;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03755;pseudo=true
LYPH01000077.1	Protein Homology	CDS	45182	45919	.	+	0	ID=cds-A8144_03755;Parent=gene-A8144_03755;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_013828427.1;locus_tag=A8144_03755;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000077.1	Genbank	gene	45989	46216	.	+	.	ID=gene-A8144_03760;Name=A8144_03760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03760
LYPH01000077.1	GeneMarkS+	CDS	45989	46216	.	+	0	ID=cds-OAR19781.1;Parent=gene-A8144_03760;Dbxref=NCBI_GP:OAR19781.1;Name=OAR19781.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03760;product=hypothetical protein;protein_id=OAR19781.1;transl_table=11
LYPH01000077.1	Genbank	gene	47567	47803	.	-	.	ID=gene-A8144_03765;Name=A8144_03765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03765
LYPH01000077.1	GeneMarkS+	CDS	47567	47803	.	-	0	ID=cds-OAR19782.1;Parent=gene-A8144_03765;Dbxref=NCBI_GP:OAR19782.1;Name=OAR19782.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03765;product=hypothetical protein;protein_id=OAR19782.1;transl_table=11
LYPH01000077.1	Genbank	gene	47805	48068	.	-	.	ID=gene-A8144_03770;Name=A8144_03770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03770
LYPH01000077.1	GeneMarkS+	CDS	47805	48068	.	-	0	ID=cds-OAR19783.1;Parent=gene-A8144_03770;Dbxref=NCBI_GP:OAR19783.1;Name=OAR19783.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03770;product=hypothetical protein;protein_id=OAR19783.1;transl_table=11
LYPH01000077.1	Genbank	pseudogene	48275	48995	.	+	.	ID=gene-A8144_03775;Name=A8144_03775;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03775;pseudo=true
LYPH01000077.1	Protein Homology	CDS	48275	48995	.	+	0	ID=cds-A8144_03775;Parent=gene-A8144_03775;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020729282.1;locus_tag=A8144_03775;product=precorrin-4 C(11)-methyltransferase;pseudo=true;transl_table=11
LYPH01000077.1	Genbank	gene	49791	50345	.	-	.	ID=gene-A8144_03780;Name=A8144_03780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03780
LYPH01000077.1	Protein Homology	CDS	49791	50345	.	-	0	ID=cds-OAR19835.1;Parent=gene-A8144_03780;Dbxref=NCBI_GP:OAR19835.1;Name=OAR19835.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908344.1;locus_tag=A8144_03780;product=RNA polymerase subunit sigma;protein_id=OAR19835.1;transl_table=11
LYPH01000077.1	Genbank	gene	50765	51151	.	+	.	ID=gene-A8144_03785;Name=A8144_03785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03785
LYPH01000077.1	Protein Homology	CDS	50765	51151	.	+	0	ID=cds-OAR19836.1;Parent=gene-A8144_03785;Dbxref=NCBI_GP:OAR19836.1;Name=OAR19836.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908343.1;locus_tag=A8144_03785;product=PPOX class F420-dependent enzyme;protein_id=OAR19836.1;transl_table=11
LYPH01000077.1	Genbank	gene	51374	51598	.	+	.	ID=gene-A8144_03790;Name=A8144_03790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03790
LYPH01000077.1	Protein Homology	CDS	51374	51598	.	+	0	ID=cds-OAR19784.1;Parent=gene-A8144_03790;Dbxref=NCBI_GP:OAR19784.1;Name=OAR19784.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908342.1;locus_tag=A8144_03790;product=hypothetical protein;protein_id=OAR19784.1;transl_table=11
LYPH01000077.1	Genbank	gene	51956	52654	.	-	.	ID=gene-A8144_03795;Name=A8144_03795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03795
LYPH01000077.1	Protein Homology	CDS	51956	52654	.	-	0	ID=cds-OAR19785.1;Parent=gene-A8144_03795;Dbxref=NCBI_GP:OAR19785.1;Name=OAR19785.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908341.1;locus_tag=A8144_03795;product=carboxymethylenebutenolidase;protein_id=OAR19785.1;transl_table=11
LYPH01000077.1	Genbank	pseudogene	52708	53209	.	+	.	ID=gene-A8144_03800;Name=A8144_03800;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03800;pseudo=true
LYPH01000077.1	Protein Homology	CDS	52708	53209	.	+	0	ID=cds-A8144_03800;Parent=gene-A8144_03800;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015303357.1;locus_tag=A8144_03800;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000077.1	Genbank	pseudogene	53243	54853	.	+	.	ID=gene-A8144_03805;Name=A8144_03805;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03805;pseudo=true
LYPH01000077.1	Protein Homology	CDS	53243	54853	.	+	0	ID=cds-A8144_03805;Parent=gene-A8144_03805;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020787232.1;locus_tag=A8144_03805;product=amidohydrolase;pseudo=true;transl_table=11
LYPH01000077.1	Genbank	gene	54846	56780	.	+	.	ID=gene-A8144_03810;Name=A8144_03810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03810
LYPH01000077.1	Protein Homology	CDS	54846	56780	.	+	0	ID=cds-OAR19786.1;Parent=gene-A8144_03810;Dbxref=NCBI_GP:OAR19786.1;Name=OAR19786.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908340.1;locus_tag=A8144_03810;product=apolipoprotein N-acyltransferase;protein_id=OAR19786.1;transl_table=11
LYPH01000077.1	Genbank	gene	56777	57610	.	+	.	ID=gene-A8144_03815;Name=A8144_03815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03815
LYPH01000077.1	Protein Homology	CDS	56777	57610	.	+	0	ID=cds-OAR19787.1;Parent=gene-A8144_03815;Dbxref=NCBI_GP:OAR19787.1;Name=OAR19787.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908339.1;locus_tag=A8144_03815;product=dolichol-phosphate mannosyltransferase;protein_id=OAR19787.1;transl_table=11
LYPH01000077.1	Genbank	gene	57567	57902	.	-	.	ID=gene-A8144_03820;Name=A8144_03820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03820
LYPH01000077.1	Protein Homology	CDS	57567	57902	.	-	0	ID=cds-OAR19837.1;Parent=gene-A8144_03820;Dbxref=NCBI_GP:OAR19837.1;Name=OAR19837.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_006245254.1;locus_tag=A8144_03820;product=hypothetical protein;protein_id=OAR19837.1;transl_table=11
LYPH01000077.1	Genbank	pseudogene	58671	63317	.	+	.	ID=gene-A8144_03825;Name=A8144_03825;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03825;pseudo=true
LYPH01000077.1	Protein Homology	CDS	58671	63317	.	+	0	ID=cds-A8144_03825;Parent=gene-A8144_03825;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003902239.1;locus_tag=A8144_03825;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000077.1	Genbank	gene	63333	63851	.	+	.	ID=gene-A8144_03830;Name=A8144_03830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03830
LYPH01000077.1	GeneMarkS+	CDS	63333	63851	.	+	0	ID=cds-OAR19788.1;Parent=gene-A8144_03830;Dbxref=NCBI_GP:OAR19788.1;Name=OAR19788.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03830;product=hypothetical protein;protein_id=OAR19788.1;transl_table=11
LYPH01000077.1	Genbank	gene	63872	64870	.	+	.	ID=gene-A8144_03835;Name=A8144_03835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03835
LYPH01000077.1	GeneMarkS+	CDS	63872	64870	.	+	0	ID=cds-OAR19789.1;Parent=gene-A8144_03835;Dbxref=NCBI_GP:OAR19789.1;Name=OAR19789.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03835;product=hypothetical protein;protein_id=OAR19789.1;transl_table=11
LYPH01000077.1	Genbank	pseudogene	65115	67441	.	+	.	ID=gene-A8144_03840;Name=A8144_03840;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03840;pseudo=true
LYPH01000077.1	Protein Homology	CDS	65115	67441	.	+	0	ID=cds-A8144_03840;Parent=gene-A8144_03840;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015290361.1;locus_tag=A8144_03840;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000077.1	Genbank	gene	67775	67960	.	-	.	ID=gene-A8144_03845;Name=A8144_03845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03845
LYPH01000077.1	GeneMarkS+	CDS	67775	67960	.	-	0	ID=cds-OAR19790.1;Parent=gene-A8144_03845;Dbxref=NCBI_GP:OAR19790.1;Name=OAR19790.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03845;product=hypothetical protein;protein_id=OAR19790.1;transl_table=11
LYPH01000077.1	Genbank	gene	68808	69041	.	+	.	ID=gene-A8144_03850;Name=A8144_03850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03850
LYPH01000077.1	GeneMarkS+	CDS	68808	69041	.	+	0	ID=cds-OAR19791.1;Parent=gene-A8144_03850;Dbxref=NCBI_GP:OAR19791.1;Name=OAR19791.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03850;product=hypothetical protein;protein_id=OAR19791.1;transl_table=11
LYPH01000077.1	Genbank	gene	70216	70479	.	+	.	ID=gene-A8144_03855;Name=A8144_03855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03855
LYPH01000077.1	GeneMarkS+	CDS	70216	70479	.	+	0	ID=cds-OAR19792.1;Parent=gene-A8144_03855;Dbxref=NCBI_GP:OAR19792.1;Name=OAR19792.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03855;product=hypothetical protein;protein_id=OAR19792.1;transl_table=11
LYPH01000077.1	Genbank	gene	71719	71910	.	+	.	ID=gene-A8144_03860;Name=A8144_03860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03860
LYPH01000077.1	GeneMarkS+	CDS	71719	71910	.	+	0	ID=cds-OAR19793.1;Parent=gene-A8144_03860;Dbxref=NCBI_GP:OAR19793.1;Name=OAR19793.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03860;product=hypothetical protein;protein_id=OAR19793.1;transl_table=11
LYPH01000077.1	Genbank	pseudogene	72631	73183	.	+	.	ID=gene-A8144_03865;Name=A8144_03865;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03865;pseudo=true
LYPH01000077.1	Protein Homology	CDS	72631	73183	.	+	0	ID=cds-A8144_03865;Parent=gene-A8144_03865;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008256422.1;locus_tag=A8144_03865;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000077.1	Genbank	pseudogene	73183	73924	.	+	.	ID=gene-A8144_03870;Name=A8144_03870;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03870;pseudo=true
LYPH01000077.1	Protein Homology	CDS	73183	73924	.	+	0	ID=cds-A8144_03870;Parent=gene-A8144_03870;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012394705.1;locus_tag=A8144_03870;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000077.1	Genbank	gene	73999	74325	.	-	.	ID=gene-A8144_03875;Name=A8144_03875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03875
LYPH01000077.1	Protein Homology	CDS	73999	74325	.	-	0	ID=cds-OAR19794.1;Parent=gene-A8144_03875;Dbxref=NCBI_GP:OAR19794.1;Name=OAR19794.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908337.1;locus_tag=A8144_03875;product=hypothetical protein;protein_id=OAR19794.1;transl_table=11
LYPH01000077.1	Genbank	pseudogene	74514	75489	.	+	.	ID=gene-A8144_03880;Name=A8144_03880;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_03880;pseudo=true
LYPH01000077.1	Protein Homology	CDS	74514	75489	.	+	0	ID=cds-A8144_03880;Parent=gene-A8144_03880;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009956373.1;locus_tag=A8144_03880;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000077.1	Genbank	gene	75479	76816	.	+	.	ID=gene-A8144_03885;Name=A8144_03885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03885
LYPH01000077.1	Protein Homology	CDS	75479	76816	.	+	0	ID=cds-OAR19795.1;Parent=gene-A8144_03885;Dbxref=NCBI_GP:OAR19795.1;Name=OAR19795.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014380070.1;locus_tag=A8144_03885;product=ABC transporter;protein_id=OAR19795.1;transl_table=11
LYPH01000077.1	Genbank	gene	76813	77772	.	+	.	ID=gene-A8144_03890;Name=A8144_03890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03890
LYPH01000077.1	Protein Homology	CDS	76813	77772	.	+	0	ID=cds-OAR19796.1;Parent=gene-A8144_03890;Dbxref=NCBI_GP:OAR19796.1;Name=OAR19796.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908335.1;locus_tag=A8144_03890;product=ABC transporter permease;protein_id=OAR19796.1;transl_table=11
LYPH01000077.1	Genbank	gene	77759	78610	.	+	.	ID=gene-A8144_03895;Name=A8144_03895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03895
LYPH01000077.1	Protein Homology	CDS	77759	78610	.	+	0	ID=cds-OAR19797.1;Parent=gene-A8144_03895;Dbxref=NCBI_GP:OAR19797.1;Name=OAR19797.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908334.1;locus_tag=A8144_03895;product=sugar ABC transporter permease;protein_id=OAR19797.1;transl_table=11
LYPH01000077.1	Genbank	gene	78613	79683	.	+	.	ID=gene-A8144_03900;Name=A8144_03900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03900
LYPH01000077.1	Protein Homology	CDS	78613	79683	.	+	0	ID=cds-OAR19798.1;Parent=gene-A8144_03900;Dbxref=NCBI_GP:OAR19798.1;Name=OAR19798.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908333.1;locus_tag=A8144_03900;product=sugar ABC transporter ATP-binding protein;protein_id=OAR19798.1;transl_table=11
LYPH01000077.1	Genbank	gene	79753	80742	.	+	.	ID=gene-A8144_03905;Name=A8144_03905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03905
LYPH01000077.1	Protein Homology	CDS	79753	80742	.	+	0	ID=cds-OAR19799.1;Parent=gene-A8144_03905;Dbxref=NCBI_GP:OAR19799.1;Name=OAR19799.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908332.1;locus_tag=A8144_03905;product=hypothetical protein;protein_id=OAR19799.1;transl_table=11
LYPH01000077.1	Genbank	gene	80847	81320	.	-	.	ID=gene-A8144_03910;Name=A8144_03910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03910
LYPH01000077.1	GeneMarkS+	CDS	80847	81320	.	-	0	ID=cds-OAR19800.1;Parent=gene-A8144_03910;Dbxref=NCBI_GP:OAR19800.1;Name=OAR19800.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03910;product=hypothetical protein;protein_id=OAR19800.1;transl_table=11
LYPH01000077.1	Genbank	gene	83019	83663	.	-	.	ID=gene-A8144_03915;Name=A8144_03915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03915
LYPH01000077.1	GeneMarkS+	CDS	83019	83663	.	-	0	ID=cds-OAR19801.1;Parent=gene-A8144_03915;Dbxref=NCBI_GP:OAR19801.1;Name=OAR19801.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03915;product=hypothetical protein;protein_id=OAR19801.1;transl_table=11
LYPH01000077.1	Genbank	gene	83922	84140	.	+	.	ID=gene-A8144_03920;Name=A8144_03920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03920
LYPH01000077.1	GeneMarkS+	CDS	83922	84140	.	+	0	ID=cds-OAR19802.1;Parent=gene-A8144_03920;Dbxref=NCBI_GP:OAR19802.1;Name=OAR19802.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03920;product=hypothetical protein;protein_id=OAR19802.1;transl_table=11
LYPH01000077.1	Genbank	gene	84505	84858	.	-	.	ID=gene-A8144_03925;Name=A8144_03925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03925
LYPH01000077.1	Protein Homology	CDS	84505	84858	.	-	0	ID=cds-OAR19838.1;Parent=gene-A8144_03925;Dbxref=NCBI_GP:OAR19838.1;Name=OAR19838.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908331.1;locus_tag=A8144_03925;product=hypothetical protein;protein_id=OAR19838.1;transl_table=11
LYPH01000077.1	Genbank	gene	85204	86895	.	+	.	ID=gene-A8144_03930;Name=A8144_03930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03930
LYPH01000077.1	Protein Homology	CDS	85204	86895	.	+	0	ID=cds-OAR19803.1;Parent=gene-A8144_03930;Dbxref=NCBI_GP:OAR19803.1;Name=OAR19803.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908330.1;locus_tag=A8144_03930;product=diguanylate cyclase;protein_id=OAR19803.1;transl_table=11
LYPH01000077.1	Genbank	gene	90008	90556	.	+	.	ID=gene-A8144_03935;Name=A8144_03935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03935
LYPH01000077.1	Protein Homology	CDS	90008	90556	.	+	0	ID=cds-OAR19804.1;Parent=gene-A8144_03935;Dbxref=NCBI_GP:OAR19804.1;Name=OAR19804.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011740216.1;locus_tag=A8144_03935;product=alkyl hydroperoxide reductase;protein_id=OAR19804.1;transl_table=11
LYPH01000077.1	Genbank	gene	90798	91604	.	-	.	ID=gene-A8144_03940;Name=A8144_03940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03940
LYPH01000077.1	Protein Homology	CDS	90798	91604	.	-	0	ID=cds-OAR19805.1;Parent=gene-A8144_03940;Dbxref=NCBI_GP:OAR19805.1;Name=OAR19805.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CC08.1;locus_tag=A8144_03940;product=CDP-diacylglycerol diphosphatase;protein_id=OAR19805.1;transl_table=11
LYPH01000077.1	Genbank	gene	92059	92250	.	-	.	ID=gene-A8144_03945;Name=A8144_03945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03945
LYPH01000077.1	GeneMarkS+	CDS	92059	92250	.	-	0	ID=cds-OAR19806.1;Parent=gene-A8144_03945;Dbxref=NCBI_GP:OAR19806.1;Name=OAR19806.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03945;product=hypothetical protein;protein_id=OAR19806.1;transl_table=11
LYPH01000077.1	Genbank	gene	92916	93140	.	-	.	ID=gene-A8144_03950;Name=A8144_03950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03950
LYPH01000077.1	GeneMarkS+	CDS	92916	93140	.	-	0	ID=cds-OAR19807.1;Parent=gene-A8144_03950;Dbxref=NCBI_GP:OAR19807.1;Name=OAR19807.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03950;product=hypothetical protein;protein_id=OAR19807.1;transl_table=11
LYPH01000077.1	Genbank	gene	93598	93801	.	-	.	ID=gene-A8144_03955;Name=A8144_03955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03955
LYPH01000077.1	GeneMarkS+	CDS	93598	93801	.	-	0	ID=cds-OAR19808.1;Parent=gene-A8144_03955;Dbxref=NCBI_GP:OAR19808.1;Name=OAR19808.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03955;product=hypothetical protein;protein_id=OAR19808.1;transl_table=11
LYPH01000077.1	Genbank	gene	93905	94162	.	-	.	ID=gene-A8144_03960;Name=A8144_03960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03960
LYPH01000077.1	GeneMarkS+	CDS	93905	94162	.	-	0	ID=cds-OAR19809.1;Parent=gene-A8144_03960;Dbxref=NCBI_GP:OAR19809.1;Name=OAR19809.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03960;product=hypothetical protein;protein_id=OAR19809.1;transl_table=11
LYPH01000077.1	Genbank	gene	94470	94808	.	-	.	ID=gene-A8144_03965;Name=A8144_03965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03965
LYPH01000077.1	GeneMarkS+	CDS	94470	94808	.	-	0	ID=cds-OAR19810.1;Parent=gene-A8144_03965;Dbxref=NCBI_GP:OAR19810.1;Name=OAR19810.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_03965;product=hypothetical protein;protein_id=OAR19810.1;transl_table=11
LYPH01000077.1	Genbank	gene	94956	96368	.	-	.	ID=gene-A8144_03970;Name=A8144_03970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03970
LYPH01000077.1	Protein Homology	CDS	94956	96368	.	-	0	ID=cds-OAR19811.1;Parent=gene-A8144_03970;Dbxref=NCBI_GP:OAR19811.1;Name=OAR19811.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015306989.1;locus_tag=A8144_03970;product=argininosuccinate lyase;protein_id=OAR19811.1;transl_table=11
LYPH01000077.1	Genbank	gene	96440	97636	.	-	.	ID=gene-A8144_03975;Name=A8144_03975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03975
LYPH01000077.1	Protein Homology	CDS	96440	97636	.	-	0	ID=cds-OAR19812.1;Parent=gene-A8144_03975;Dbxref=NCBI_GP:OAR19812.1;Name=OAR19812.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020787650.1;locus_tag=A8144_03975;product=argininosuccinate synthase;protein_id=OAR19812.1;transl_table=11
LYPH01000077.1	Genbank	gene	97649	98152	.	-	.	ID=gene-A8144_03980;Name=A8144_03980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03980
LYPH01000077.1	Protein Homology	CDS	97649	98152	.	-	0	ID=cds-OAR19813.1;Parent=gene-A8144_03980;Dbxref=NCBI_GP:OAR19813.1;Name=OAR19813.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P57992.1;locus_tag=A8144_03980;product=arginine repressor;protein_id=OAR19813.1;transl_table=11
LYPH01000077.1	Genbank	gene	98155	99075	.	-	.	ID=gene-A8144_03985;Name=A8144_03985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03985
LYPH01000077.1	Protein Homology	CDS	98155	99075	.	-	0	ID=cds-OAR19814.1;Parent=gene-A8144_03985;Dbxref=NCBI_GP:OAR19814.1;Name=OAR19814.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:A0PP77.1;locus_tag=A8144_03985;product=ornithine carbamoyltransferase;protein_id=OAR19814.1;transl_table=11
LYPH01000077.1	Genbank	gene	99149	100363	.	-	.	ID=gene-A8144_03990;Name=A8144_03990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03990
LYPH01000077.1	Protein Homology	CDS	99149	100363	.	-	0	ID=cds-OAR19815.1;Parent=gene-A8144_03990;Dbxref=NCBI_GP:OAR19815.1;Name=OAR19815.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CC12.1;locus_tag=A8144_03990;product=acetylornithine aminotransferase;protein_id=OAR19815.1;transl_table=11
LYPH01000077.1	Genbank	gene	100415	101308	.	-	.	ID=gene-A8144_03995;Name=A8144_03995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_03995
LYPH01000077.1	Protein Homology	CDS	100415	101308	.	-	0	ID=cds-OAR19840.1;Parent=gene-A8144_03995;Dbxref=NCBI_GP:OAR19840.1;Name=OAR19840.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009954340.1;locus_tag=A8144_03995;product=acetylglutamate kinase;protein_id=OAR19840.1;transl_table=11
LYPH01000077.1	Genbank	gene	101317	102531	.	-	.	ID=gene-A8144_04000;Name=A8144_04000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04000
LYPH01000077.1	Protein Homology	CDS	101317	102531	.	-	0	ID=cds-OAR19839.1;Parent=gene-A8144_04000;Dbxref=NCBI_GP:OAR19839.1;Name=OAR19839.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015306983.1;locus_tag=A8144_04000;product=bifunctional ornithine acetyltransferase/N-acetylglutamate synthase;protein_id=OAR19839.1;transl_table=11
LYPH01000077.1	Genbank	gene	102537	103580	.	-	.	ID=gene-A8144_04005;Name=A8144_04005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04005
LYPH01000077.1	Protein Homology	CDS	102537	103580	.	-	0	ID=cds-OAR19816.1;Parent=gene-A8144_04005;Dbxref=NCBI_GP:OAR19816.1;Name=OAR19816.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008257627.1;locus_tag=A8144_04005;product=N-acetyl-gamma-glutamyl-phosphate reductase;protein_id=OAR19816.1;transl_table=11
LYPH01000077.1	Genbank	pseudogene	103793	104997	.	+	.	ID=gene-A8144_04010;Name=A8144_04010;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04010;pseudo=true
LYPH01000077.1	Protein Homology	CDS	103793	104997	.	+	0	ID=cds-A8144_04010;Parent=gene-A8144_04010;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019750077.1;locus_tag=A8144_04010;product=transposase;pseudo=true;transl_table=11
LYPH01000077.1	Genbank	gene	105722	106087	.	-	.	ID=gene-A8144_04015;Name=A8144_04015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04015
LYPH01000077.1	GeneMarkS+	CDS	105722	106087	.	-	0	ID=cds-OAR19817.1;Parent=gene-A8144_04015;Dbxref=NCBI_GP:OAR19817.1;Name=OAR19817.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04015;product=hypothetical protein;protein_id=OAR19817.1;transl_table=11
LYPH01000077.1	Genbank	gene	106656	109163	.	-	.	ID=gene-A8144_04020;Name=A8144_04020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04020
LYPH01000077.1	Protein Homology	CDS	106656	109163	.	-	0	ID=cds-OAR19818.1;Parent=gene-A8144_04020;Dbxref=NCBI_GP:OAR19818.1;Name=OAR19818.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011739756.1;locus_tag=A8144_04020;product=phenylalanine--tRNA ligase subunit beta;protein_id=OAR19818.1;transl_table=11
LYPH01000077.1	Genbank	gene	109163	110215	.	-	.	ID=gene-A8144_04025;Name=A8144_04025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04025
LYPH01000077.1	Protein Homology	CDS	109163	110215	.	-	0	ID=cds-OAR19841.1;Parent=gene-A8144_04025;Dbxref=NCBI_GP:OAR19841.1;Name=OAR19841.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007776044.1;locus_tag=A8144_04025;product=phenylalanine--tRNA ligase subunit alpha;protein_id=OAR19841.1;transl_table=11
LYPH01000077.1	Genbank	gene	110659	110862	.	+	.	ID=gene-A8144_04030;Name=A8144_04030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04030
LYPH01000077.1	GeneMarkS+	CDS	110659	110862	.	+	0	ID=cds-OAR19819.1;Parent=gene-A8144_04030;Dbxref=NCBI_GP:OAR19819.1;Name=OAR19819.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04030;product=hypothetical protein;protein_id=OAR19819.1;transl_table=11
LYPH01000077.1	Genbank	gene	111064	112038	.	-	.	ID=gene-A8144_04035;Name=A8144_04035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04035
LYPH01000077.1	Protein Homology	CDS	111064	112038	.	-	0	ID=cds-OAR19820.1;Parent=gene-A8144_04035;Dbxref=NCBI_GP:OAR19820.1;Name=OAR19820.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908317.1;locus_tag=A8144_04035;product=guanylate cyclase;protein_id=OAR19820.1;transl_table=11
LYPH01000077.1	Genbank	pseudogene	112198	113122	.	+	.	ID=gene-A8144_04040;Name=A8144_04040;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04040;pseudo=true
LYPH01000077.1	Protein Homology	CDS	112198	113122	.	+	0	ID=cds-A8144_04040;Parent=gene-A8144_04040;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009977310.1;locus_tag=A8144_04040;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000077.1	Genbank	gene	113366	114145	.	-	.	ID=gene-A8144_04045;Name=A8144_04045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04045
LYPH01000077.1	Protein Homology	CDS	113366	114145	.	-	0	ID=cds-OAR19842.1;Parent=gene-A8144_04045;Dbxref=NCBI_GP:OAR19842.1;Name=OAR19842.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908316.1;locus_tag=A8144_04045;product=RNA methyltransferase;protein_id=OAR19842.1;transl_table=11
LYPH01000077.1	Genbank	gene	114200	114589	.	-	.	ID=gene-A8144_04050;Name=A8144_04050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04050
LYPH01000077.1	Protein Homology	CDS	114200	114589	.	-	0	ID=cds-OAR19821.1;Parent=gene-A8144_04050;Dbxref=NCBI_GP:OAR19821.1;Name=OAR19821.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015290017.1;locus_tag=A8144_04050;product=50S ribosomal protein L20;protein_id=OAR19821.1;transl_table=11
LYPH01000077.1	Genbank	gene	114643	114837	.	-	.	ID=gene-A8144_04055;Name=A8144_04055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04055
LYPH01000077.1	Protein Homology	CDS	114643	114837	.	-	0	ID=cds-OAR19822.1;Parent=gene-A8144_04055;Dbxref=NCBI_GP:OAR19822.1;Name=OAR19822.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908314.1;locus_tag=A8144_04055;product=50S ribosomal protein L35;protein_id=OAR19822.1;transl_table=11
LYPH01000077.1	Genbank	gene	114888	115445	.	-	.	ID=gene-A8144_04060;Name=A8144_04060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04060
LYPH01000077.1	Protein Homology	CDS	114888	115445	.	-	0	ID=cds-OAR19823.1;Parent=gene-A8144_04060;Dbxref=NCBI_GP:OAR19823.1;Name=OAR19823.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908313.1;locus_tag=A8144_04060;product=translation initiation factor IF-3;protein_id=OAR19823.1;transl_table=11
LYPH01000077.1	Genbank	gene	116210	119329	.	+	.	ID=gene-A8144_04065;Name=A8144_04065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04065
LYPH01000077.1	Protein Homology	CDS	116210	119329	.	+	0	ID=cds-OAR19843.1;Parent=gene-A8144_04065;Dbxref=NCBI_GP:OAR19843.1;Name=OAR19843.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908312.1;locus_tag=A8144_04065;product=lysine--tRNA ligase;protein_id=OAR19843.1;transl_table=11
LYPH01000077.1	Genbank	gene	120006	122915	.	-	.	ID=gene-A8144_04070;Name=A8144_04070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04070
LYPH01000077.1	Protein Homology	CDS	120006	122915	.	-	0	ID=cds-OAR19824.1;Parent=gene-A8144_04070;Dbxref=NCBI_GP:OAR19824.1;Name=OAR19824.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CC24.1;locus_tag=A8144_04070;product=excinuclease ABC subunit A;protein_id=OAR19824.1;transl_table=11
LYPH01000077.1	Genbank	gene	123053	123751	.	+	.	ID=gene-A8144_04075;Name=A8144_04075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04075
LYPH01000077.1	Protein Homology	CDS	123053	123751	.	+	0	ID=cds-OAR19825.1;Parent=gene-A8144_04075;Dbxref=NCBI_GP:OAR19825.1;Name=OAR19825.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908310.1;locus_tag=A8144_04075;product=Zn-dependent hydrolase;protein_id=OAR19825.1;transl_table=11
LYPH01000077.1	Genbank	gene	123760	124203	.	-	.	ID=gene-A8144_04080;Name=A8144_04080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04080
LYPH01000077.1	Protein Homology	CDS	123760	124203	.	-	0	ID=cds-OAR19826.1;Parent=gene-A8144_04080;Dbxref=NCBI_GP:OAR19826.1;Name=OAR19826.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908309.1;locus_tag=A8144_04080;product=universal stress protein;protein_id=OAR19826.1;transl_table=11
LYPH01000077.1	Genbank	gene	124495	126078	.	+	.	ID=gene-A8144_04085;Name=A8144_04085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04085
LYPH01000077.1	Protein Homology	CDS	124495	126078	.	+	0	ID=cds-OAR19827.1;Parent=gene-A8144_04085;Dbxref=NCBI_GP:OAR19827.1;Name=OAR19827.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908308.1;locus_tag=A8144_04085;product=hypothetical protein;protein_id=OAR19827.1;transl_table=11
LYPH01000077.1	Genbank	pseudogene	126086	127455	.	-	.	ID=gene-A8144_04090;Name=A8144_04090;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04090;pseudo=true
LYPH01000077.1	Protein Homology	CDS	126086	127455	.	-	0	ID=cds-A8144_04090;Parent=gene-A8144_04090;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014390176.1;locus_tag=A8144_04090;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000077.1	Genbank	gene	127491	129650	.	-	.	ID=gene-A8144_04095;Name=A8144_04095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04095
LYPH01000077.1	Protein Homology	CDS	127491	129650	.	-	0	ID=cds-OAR19828.1;Parent=gene-A8144_04095;Dbxref=NCBI_GP:OAR19828.1;Name=OAR19828.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009954231.1;locus_tag=A8144_04095;product=excinuclease ABC subunit B;protein_id=OAR19828.1;transl_table=11
LYPH01000077.1	Genbank	pseudogene	129753	131786	.	-	.	ID=gene-A8144_04100;Name=A8144_04100;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04100;pseudo=true
LYPH01000077.1	Protein Homology	CDS	129753	131786	.	-	0	ID=cds-A8144_04100;Parent=gene-A8144_04100;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014380346.1;locus_tag=A8144_04100;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000077.1	Genbank	pseudogene	132569	134629	.	+	.	ID=gene-A8144_04105;Name=A8144_04105;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04105;pseudo=true
LYPH01000077.1	Protein Homology	CDS	132569	134629	.	+	0	ID=cds-A8144_04105;Parent=gene-A8144_04105;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019306665.1;locus_tag=A8144_04105;product=ABC transporter ATP-binding protein;pseudo=true;transl_table=11
LYPH01000077.1	Genbank	gene	134722	135165	.	+	.	ID=gene-A8144_04110;Name=A8144_04110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04110
LYPH01000077.1	Protein Homology	CDS	134722	135165	.	+	0	ID=cds-OAR19829.1;Parent=gene-A8144_04110;Dbxref=NCBI_GP:OAR19829.1;Name=OAR19829.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003898953.1;locus_tag=A8144_04110;product=hypothetical protein;protein_id=OAR19829.1;transl_table=11
LYPH01000077.1	Genbank	gene	135345	135725	.	-	.	ID=gene-A8144_04115;Name=A8144_04115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04115
LYPH01000077.1	GeneMarkS+	CDS	135345	135725	.	-	0	ID=cds-OAR19830.1;Parent=gene-A8144_04115;Dbxref=NCBI_GP:OAR19830.1;Name=OAR19830.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04115;product=hypothetical protein;protein_id=OAR19830.1;transl_table=11
LYPH01000077.1	Genbank	gene	135820	137052	.	-	.	ID=gene-A8144_04120;Name=A8144_04120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04120
LYPH01000077.1	Protein Homology	CDS	135820	137052	.	-	0	ID=cds-OAR19831.1;Parent=gene-A8144_04120;Dbxref=NCBI_GP:OAR19831.1;Name=OAR19831.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q50178.1;locus_tag=A8144_04120;product=dephospho-CoA kinase;protein_id=OAR19831.1;transl_table=11
LYPH01000077.1	Genbank	gene	137079	138524	.	-	.	ID=gene-A8144_04125;Name=A8144_04125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04125
LYPH01000077.1	Protein Homology	CDS	137079	138524	.	-	0	ID=cds-OAR19832.1;Parent=gene-A8144_04125;Dbxref=NCBI_GP:OAR19832.1;Name=OAR19832.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019511500.1;locus_tag=A8144_04125;product=30S ribosomal protein S1;protein_id=OAR19832.1;transl_table=11
LYPH01000077.1	Genbank	gene	138875	139087	.	+	.	ID=gene-A8144_04130;Name=A8144_04130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04130
LYPH01000077.1	GeneMarkS+	CDS	138875	139087	.	+	0	ID=cds-OAR19833.1;Parent=gene-A8144_04130;Dbxref=NCBI_GP:OAR19833.1;Name=OAR19833.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04130;product=hypothetical protein;protein_id=OAR19833.1;transl_table=11
##sequence-region LYPH01000078.1 1 10644
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000078.1	Genbank	region	1	10644	.	+	.	ID=LYPH01000078.1:1..10644;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000078.1	Genbank	gene	620	949	.	+	.	ID=gene-A8144_13385;Name=A8144_13385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13385
LYPH01000078.1	GeneMarkS+	CDS	620	949	.	+	0	ID=cds-OAR19751.1;Parent=gene-A8144_13385;Dbxref=NCBI_GP:OAR19751.1;Name=OAR19751.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13385;product=hypothetical protein;protein_id=OAR19751.1;transl_table=11
LYPH01000078.1	Genbank	gene	2445	2684	.	-	.	ID=gene-A8144_13390;Name=A8144_13390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13390
LYPH01000078.1	GeneMarkS+	CDS	2445	2684	.	-	0	ID=cds-OAR19752.1;Parent=gene-A8144_13390;Dbxref=NCBI_GP:OAR19752.1;Name=OAR19752.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13390;product=hypothetical protein;protein_id=OAR19752.1;transl_table=11
LYPH01000078.1	Genbank	gene	6648	6971	.	-	.	ID=gene-A8144_13395;Name=A8144_13395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13395
LYPH01000078.1	GeneMarkS+	CDS	6648	6971	.	-	0	ID=cds-OAR19753.1;Parent=gene-A8144_13395;Dbxref=NCBI_GP:OAR19753.1;Name=OAR19753.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13395;product=hypothetical protein;protein_id=OAR19753.1;transl_table=11
LYPH01000078.1	Genbank	gene	6984	7253	.	-	.	ID=gene-A8144_13400;Name=A8144_13400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13400
LYPH01000078.1	GeneMarkS+	CDS	6984	7253	.	-	0	ID=cds-OAR19754.1;Parent=gene-A8144_13400;Dbxref=NCBI_GP:OAR19754.1;Name=OAR19754.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13400;product=hypothetical protein;protein_id=OAR19754.1;transl_table=11
##sequence-region LYPH01000079.1 1 10577
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000079.1	Genbank	region	1	10577	.	+	.	ID=LYPH01000079.1:1..10577;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000079.1	Genbank	gene	270	458	.	+	.	ID=gene-A8144_13405;Name=A8144_13405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13405
LYPH01000079.1	GeneMarkS+	CDS	270	458	.	+	0	ID=cds-OAR19737.1;Parent=gene-A8144_13405;Dbxref=NCBI_GP:OAR19737.1;Name=OAR19737.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13405;product=hypothetical protein;protein_id=OAR19737.1;transl_table=11
LYPH01000079.1	Genbank	gene	924	1154	.	+	.	ID=gene-A8144_13410;Name=A8144_13410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13410
LYPH01000079.1	GeneMarkS+	CDS	924	1154	.	+	0	ID=cds-OAR19738.1;Parent=gene-A8144_13410;Dbxref=NCBI_GP:OAR19738.1;Name=OAR19738.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13410;product=hypothetical protein;protein_id=OAR19738.1;transl_table=11
LYPH01000079.1	Genbank	gene	1558	1794	.	+	.	ID=gene-A8144_13415;Name=A8144_13415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13415
LYPH01000079.1	GeneMarkS+	CDS	1558	1794	.	+	0	ID=cds-OAR19739.1;Parent=gene-A8144_13415;Dbxref=NCBI_GP:OAR19739.1;Name=OAR19739.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13415;product=hypothetical protein;protein_id=OAR19739.1;transl_table=11
LYPH01000079.1	Genbank	gene	3295	3780	.	-	.	ID=gene-A8144_13420;Name=A8144_13420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13420
LYPH01000079.1	Protein Homology	CDS	3295	3780	.	-	0	ID=cds-OAR19740.1;Parent=gene-A8144_13420;Dbxref=NCBI_GP:OAR19740.1;Name=OAR19740.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908650.1;locus_tag=A8144_13420;product=hypothetical protein;protein_id=OAR19740.1;transl_table=11
LYPH01000079.1	Genbank	gene	3825	4433	.	-	.	ID=gene-A8144_13425;Name=A8144_13425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13425
LYPH01000079.1	Protein Homology	CDS	3825	4433	.	-	0	ID=cds-OAR19741.1;Parent=gene-A8144_13425;Dbxref=NCBI_GP:OAR19741.1;Name=OAR19741.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908649.1;locus_tag=A8144_13425;product=dTDP-4-dehydrorhamnose 3%2C5-epimerase;protein_id=OAR19741.1;transl_table=11
LYPH01000079.1	Genbank	gene	4435	5430	.	-	.	ID=gene-A8144_13430;Name=A8144_13430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13430
LYPH01000079.1	Protein Homology	CDS	4435	5430	.	-	0	ID=cds-OAR19742.1;Parent=gene-A8144_13430;Dbxref=NCBI_GP:OAR19742.1;Name=OAR19742.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007773488.1;locus_tag=A8144_13430;product=dTDP-glucose 4%2C6-dehydratase;protein_id=OAR19742.1;transl_table=11
LYPH01000079.1	Genbank	gene	5951	6172	.	+	.	ID=gene-A8144_13435;Name=A8144_13435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13435
LYPH01000079.1	Protein Homology	CDS	5951	6172	.	+	0	ID=cds-OAR19743.1;Parent=gene-A8144_13435;Dbxref=NCBI_GP:OAR19743.1;Name=OAR19743.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003418601.1;locus_tag=A8144_13435;product=translation initiation factor IF-1;protein_id=OAR19743.1;transl_table=11
LYPH01000079.1	Genbank	gene	6212	6325	.	+	.	ID=gene-A8144_13440;Name=A8144_13440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13440
LYPH01000079.1	Protein Homology	CDS	6212	6325	.	+	0	ID=cds-OAR19744.1;Parent=gene-A8144_13440;Dbxref=NCBI_GP:OAR19744.1;Name=OAR19744.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005987264.1;locus_tag=A8144_13440;product=50S ribosomal protein L36;protein_id=OAR19744.1;transl_table=11
LYPH01000079.1	Genbank	gene	6502	6876	.	+	.	ID=gene-A8144_13445;Name=A8144_13445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13445
LYPH01000079.1	Protein Homology	CDS	6502	6876	.	+	0	ID=cds-OAR19745.1;Parent=gene-A8144_13445;Dbxref=NCBI_GP:OAR19745.1;Name=OAR19745.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003905085.1;locus_tag=A8144_13445;product=30S ribosomal protein S13;protein_id=OAR19745.1;transl_table=11
LYPH01000079.1	Genbank	gene	6880	7296	.	+	.	ID=gene-A8144_13450;Name=A8144_13450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13450
LYPH01000079.1	Protein Homology	CDS	6880	7296	.	+	0	ID=cds-OAR19746.1;Parent=gene-A8144_13450;Dbxref=NCBI_GP:OAR19746.1;Name=OAR19746.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q5Z1L1.1;locus_tag=A8144_13450;product=30S ribosomal protein S11;protein_id=OAR19746.1;transl_table=11
LYPH01000079.1	Genbank	gene	7330	7935	.	+	.	ID=gene-A8144_13455;Name=A8144_13455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13455
LYPH01000079.1	Protein Homology	CDS	7330	7935	.	+	0	ID=cds-OAR19747.1;Parent=gene-A8144_13455;Dbxref=NCBI_GP:OAR19747.1;Name=OAR19747.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007773473.1;locus_tag=A8144_13455;product=30S ribosomal protein S4;protein_id=OAR19747.1;transl_table=11
LYPH01000079.1	Genbank	gene	8020	9063	.	+	.	ID=gene-A8144_13460;Name=A8144_13460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13460
LYPH01000079.1	Protein Homology	CDS	8020	9063	.	+	0	ID=cds-OAR19748.1;Parent=gene-A8144_13460;Dbxref=NCBI_GP:OAR19748.1;Name=OAR19748.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020101463.1;locus_tag=A8144_13460;product=DNA-directed RNA polymerase subunit alpha;protein_id=OAR19748.1;transl_table=11
LYPH01000079.1	Genbank	gene	9087	9599	.	+	.	ID=gene-A8144_13465;Name=A8144_13465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13465
LYPH01000079.1	Protein Homology	CDS	9087	9599	.	+	0	ID=cds-OAR19749.1;Parent=gene-A8144_13465;Dbxref=NCBI_GP:OAR19749.1;Name=OAR19749.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9X797.1;locus_tag=A8144_13465;product=50S ribosomal protein L17;protein_id=OAR19749.1;transl_table=11
LYPH01000079.1	Genbank	gene	9625	10440	.	+	.	ID=gene-A8144_13470;Name=A8144_13470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13470
LYPH01000079.1	Protein Homology	CDS	9625	10440	.	+	0	ID=cds-OAR19750.1;Parent=gene-A8144_13470;Dbxref=NCBI_GP:OAR19750.1;Name=OAR19750.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003904329.1;locus_tag=A8144_13470;product=tRNA pseudouridine(38%2C39%2C40) synthase TruA;protein_id=OAR19750.1;transl_table=11
##sequence-region LYPH01000080.1 1 10398
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000080.1	Genbank	region	1	10398	.	+	.	ID=LYPH01000080.1:1..10398;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000080.1	Genbank	pseudogene	1	805	.	-	.	ID=gene-A8144_13475;Name=A8144_13475;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13475;pseudo=true
LYPH01000080.1	Protein Homology	CDS	1	805	.	-	0	ID=cds-A8144_13475;Parent=gene-A8144_13475;Note=frameshifted%3B internal stop%3B incomplete%3B missing stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014381236.1;locus_tag=A8144_13475;product=SAM-dependent methyltransferase;pseudo=true;transl_table=11
LYPH01000080.1	Genbank	gene	958	1821	.	-	.	ID=gene-A8144_13480;Name=A8144_13480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13480
LYPH01000080.1	Protein Homology	CDS	958	1821	.	-	0	ID=cds-OAR19730.1;Parent=gene-A8144_13480;Dbxref=NCBI_GP:OAR19730.1;Name=OAR19730.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908914.1;locus_tag=A8144_13480;product=3-hydroxybutyryl-CoA dehydrogenase;protein_id=OAR19730.1;transl_table=11
LYPH01000080.1	Genbank	pseudogene	2050	3326	.	-	.	ID=gene-A8144_13485;Name=A8144_13485;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13485;pseudo=true
LYPH01000080.1	Protein Homology	CDS	2050	3326	.	-	0	ID=cds-A8144_13485;Parent=gene-A8144_13485;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007768323.1;locus_tag=A8144_13485;product=isocitrate lyase;pseudo=true;transl_table=11
LYPH01000080.1	Genbank	gene	3623	4417	.	-	.	ID=gene-A8144_13490;Name=A8144_13490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13490
LYPH01000080.1	Protein Homology	CDS	3623	4417	.	-	0	ID=cds-OAR19731.1;Parent=gene-A8144_13490;Dbxref=NCBI_GP:OAR19731.1;Name=OAR19731.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908915.1;locus_tag=A8144_13490;product=acyl-ACP thioesterase;protein_id=OAR19731.1;transl_table=11
LYPH01000080.1	Genbank	pseudogene	4596	6052	.	+	.	ID=gene-A8144_13495;Name=A8144_13495;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13495;pseudo=true
LYPH01000080.1	Protein Homology	CDS	4596	6052	.	+	0	ID=cds-A8144_13495;Parent=gene-A8144_13495;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003892333.1;locus_tag=A8144_13495;product=Cro/Cl family transcriptional regulator;pseudo=true;transl_table=11
LYPH01000080.1	Genbank	gene	6049	6615	.	+	.	ID=gene-A8144_13500;Name=A8144_13500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13500
LYPH01000080.1	Protein Homology	CDS	6049	6615	.	+	0	ID=cds-OAR19732.1;Parent=gene-A8144_13500;Dbxref=NCBI_GP:OAR19732.1;Name=OAR19732.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908916.1;locus_tag=A8144_13500;product=4-carboxymuconolactone decarboxylase;protein_id=OAR19732.1;transl_table=11
LYPH01000080.1	Genbank	pseudogene	6920	7630	.	-	.	ID=gene-A8144_13505;Name=A8144_13505;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13505;pseudo=true
LYPH01000080.1	Protein Homology	CDS	6920	7630	.	-	0	ID=cds-A8144_13505;Parent=gene-A8144_13505;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011738570.1;locus_tag=A8144_13505;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000080.1	Genbank	gene	7776	8564	.	+	.	ID=gene-A8144_13510;Name=A8144_13510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13510
LYPH01000080.1	Protein Homology	CDS	7776	8564	.	+	0	ID=cds-OAR19736.1;Parent=gene-A8144_13510;Dbxref=NCBI_GP:OAR19736.1;Name=OAR19736.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908917.1;locus_tag=A8144_13510;product=isoprenyl transferase;protein_id=OAR19736.1;transl_table=11
LYPH01000080.1	Genbank	gene	8899	9279	.	-	.	ID=gene-A8144_13515;Name=A8144_13515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13515
LYPH01000080.1	Protein Homology	CDS	8899	9279	.	-	0	ID=cds-OAR19733.1;Parent=gene-A8144_13515;Dbxref=NCBI_GP:OAR19733.1;Name=OAR19733.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908918.1;locus_tag=A8144_13515;product=hypothetical protein;protein_id=OAR19733.1;transl_table=11
LYPH01000080.1	Genbank	gene	9405	9590	.	+	.	ID=gene-A8144_13520;Name=A8144_13520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13520
LYPH01000080.1	GeneMarkS+	CDS	9405	9590	.	+	0	ID=cds-OAR19734.1;Parent=gene-A8144_13520;Dbxref=NCBI_GP:OAR19734.1;Name=OAR19734.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13520;product=hypothetical protein;protein_id=OAR19734.1;transl_table=11
LYPH01000080.1	Genbank	gene	9678	10160	.	+	.	ID=gene-A8144_13525;Name=A8144_13525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13525
LYPH01000080.1	GeneMarkS+	CDS	9678	10160	.	+	0	ID=cds-OAR19735.1;Parent=gene-A8144_13525;Dbxref=NCBI_GP:OAR19735.1;Name=OAR19735.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13525;product=hypothetical protein;protein_id=OAR19735.1;transl_table=11
LYPH01000080.1	Genbank	pseudogene	10259	10396	.	+	.	ID=gene-A8144_13530;Name=A8144_13530;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13530;pseudo=true
LYPH01000080.1	Protein Homology	CDS	10259	10396	.	+	0	ID=cds-A8144_13530;Parent=gene-A8144_13530;Note=incomplete%3B partial in the middle of a contig%3B missing start;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907599.1;locus_tag=A8144_13530;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region LYPH01000081.1 1 10152
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000081.1	Genbank	region	1	10152	.	+	.	ID=LYPH01000081.1:1..10152;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000081.1	Genbank	gene	118	423	.	-	.	ID=gene-A8144_13535;Name=A8144_13535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13535
LYPH01000081.1	Protein Homology	CDS	118	423	.	-	0	ID=cds-OAR19726.1;Parent=gene-A8144_13535;Dbxref=NCBI_GP:OAR19726.1;Name=OAR19726.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908865.1;locus_tag=A8144_13535;product=hypothetical protein;protein_id=OAR19726.1;transl_table=11
LYPH01000081.1	Genbank	gene	441	1844	.	-	.	ID=gene-A8144_13540;Name=A8144_13540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13540
LYPH01000081.1	Protein Homology	CDS	441	1844	.	-	0	ID=cds-OAR19727.1;Parent=gene-A8144_13540;Dbxref=NCBI_GP:OAR19727.1;Name=OAR19727.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_005624645.1;locus_tag=A8144_13540;product=dihydrolipoyl dehydrogenase;protein_id=OAR19727.1;transl_table=11
LYPH01000081.1	Genbank	pseudogene	3325	4581	.	-	.	ID=gene-A8144_13545;Name=A8144_13545;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13545;pseudo=true
LYPH01000081.1	Protein Homology	CDS	3325	4581	.	-	0	ID=cds-A8144_13545;Parent=gene-A8144_13545;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014381244.1;locus_tag=A8144_13545;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000081.1	Genbank	pseudogene	4682	6784	.	+	.	ID=gene-A8144_13550;Name=A8144_13550;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13550;pseudo=true
LYPH01000081.1	Protein Homology	CDS	4682	6784	.	+	0	ID=cds-A8144_13550;Parent=gene-A8144_13550;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014381245.1;locus_tag=A8144_13550;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000081.1	Genbank	gene	7781	8242	.	+	.	ID=gene-A8144_13555;Name=A8144_13555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13555
LYPH01000081.1	Protein Homology	CDS	7781	8242	.	+	0	ID=cds-OAR19728.1;Parent=gene-A8144_13555;Dbxref=NCBI_GP:OAR19728.1;Name=OAR19728.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908863.1;locus_tag=A8144_13555;product=hypothetical protein;protein_id=OAR19728.1;transl_table=11
LYPH01000081.1	Genbank	gene	8516	8845	.	+	.	ID=gene-A8144_13560;Name=A8144_13560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13560
LYPH01000081.1	Protein Homology	CDS	8516	8845	.	+	0	ID=cds-OAR19729.1;Parent=gene-A8144_13560;Dbxref=NCBI_GP:OAR19729.1;Name=OAR19729.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908862.1;locus_tag=A8144_13560;product=hypothetical protein;protein_id=OAR19729.1;transl_table=11
LYPH01000081.1	Genbank	pseudogene	9019	10152	.	-	.	ID=gene-A8144_13565;Name=A8144_13565;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13565;pseudo=true
LYPH01000081.1	Protein Homology	CDS	9019	10152	.	-	0	ID=cds-A8144_13565;Parent=gene-A8144_13565;Note=incomplete%3B too short partial abutting assembly gap%3B missing start;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P54881.1;locus_tag=A8144_13565;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region LYPH01000082.1 1 10005
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000082.1	Genbank	region	1	10005	.	+	.	ID=LYPH01000082.1:1..10005;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000082.1	Genbank	gene	554	766	.	+	.	ID=gene-A8144_13570;Name=A8144_13570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13570
LYPH01000082.1	GeneMarkS+	CDS	554	766	.	+	0	ID=cds-OAR19720.1;Parent=gene-A8144_13570;Dbxref=NCBI_GP:OAR19720.1;Name=OAR19720.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13570;product=hypothetical protein;protein_id=OAR19720.1;transl_table=11
LYPH01000082.1	Genbank	gene	898	1245	.	-	.	ID=gene-A8144_13575;Name=A8144_13575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13575
LYPH01000082.1	GeneMarkS+	CDS	898	1245	.	-	0	ID=cds-OAR19721.1;Parent=gene-A8144_13575;Dbxref=NCBI_GP:OAR19721.1;Name=OAR19721.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13575;product=hypothetical protein;protein_id=OAR19721.1;transl_table=11
LYPH01000082.1	Genbank	gene	3363	3596	.	+	.	ID=gene-A8144_13580;Name=A8144_13580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13580
LYPH01000082.1	GeneMarkS+	CDS	3363	3596	.	+	0	ID=cds-OAR19722.1;Parent=gene-A8144_13580;Dbxref=NCBI_GP:OAR19722.1;Name=OAR19722.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13580;product=hypothetical protein;protein_id=OAR19722.1;transl_table=11
LYPH01000082.1	Genbank	gene	3597	3893	.	+	.	ID=gene-A8144_13585;Name=A8144_13585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13585
LYPH01000082.1	GeneMarkS+	CDS	3597	3893	.	+	0	ID=cds-OAR19723.1;Parent=gene-A8144_13585;Dbxref=NCBI_GP:OAR19723.1;Name=OAR19723.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13585;product=hypothetical protein;protein_id=OAR19723.1;transl_table=11
LYPH01000082.1	Genbank	gene	3926	4711	.	+	.	ID=gene-A8144_13590;Name=A8144_13590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13590
LYPH01000082.1	Protein Homology	CDS	3926	4711	.	+	0	ID=cds-OAR19725.1;Parent=gene-A8144_13590;Dbxref=NCBI_GP:OAR19725.1;Name=OAR19725.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9Z5K4.1;locus_tag=A8144_13590;product=thioesterase;protein_id=OAR19725.1;transl_table=11
LYPH01000082.1	Genbank	gene	5357	7108	.	+	.	ID=gene-A8144_13595;Name=A8144_13595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13595
LYPH01000082.1	Protein Homology	CDS	5357	7108	.	+	0	ID=cds-OAR19724.1;Parent=gene-A8144_13595;Dbxref=NCBI_GP:OAR19724.1;Name=OAR19724.1;Note=activates fatty acids by binding to coenzyme A;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908857.1;locus_tag=A8144_13595;product=acyl-CoA synthetase;protein_id=OAR19724.1;transl_table=11
LYPH01000082.1	Genbank	pseudogene	7105	10005	.	+	.	ID=gene-A8144_13600;Name=A8144_13600;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13600;pseudo=true
LYPH01000082.1	Protein Homology	CDS	7105	10005	.	+	0	ID=cds-A8144_13600;Parent=gene-A8144_13600;Note=incomplete%3B too short partial abutting assembly gap%3B missing stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908856.1;locus_tag=A8144_13600;product=polyketide synthase;pseudo=true;transl_table=11
##sequence-region LYPH01000083.1 1 9489
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000083.1	Genbank	region	1	9489	.	+	.	ID=LYPH01000083.1:1..9489;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000083.1	Genbank	pseudogene	378	1521	.	+	.	ID=gene-A8144_13605;Name=A8144_13605;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13605;pseudo=true
LYPH01000083.1	Protein Homology	CDS	378	1521	.	+	0	ID=cds-A8144_13605;Parent=gene-A8144_13605;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020728344.1;locus_tag=A8144_13605;product=lipid-transfer protein;pseudo=true;transl_table=11
LYPH01000083.1	Genbank	pseudogene	1649	2319	.	-	.	ID=gene-A8144_13610;Name=A8144_13610;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13610;pseudo=true
LYPH01000083.1	Protein Homology	CDS	1649	2319	.	-	0	ID=cds-A8144_13610;Parent=gene-A8144_13610;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019738144.1;locus_tag=A8144_13610;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000083.1	Genbank	gene	2479	3474	.	+	.	ID=gene-A8144_13615;Name=A8144_13615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13615
LYPH01000083.1	Protein Homology	CDS	2479	3474	.	+	0	ID=cds-OAR19717.1;Parent=gene-A8144_13615;Dbxref=NCBI_GP:OAR19717.1;Name=OAR19717.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907965.1;locus_tag=A8144_13615;product=riboflavin biosynthesis protein RibF;protein_id=OAR19717.1;transl_table=11
LYPH01000083.1	Genbank	gene	3592	3861	.	+	.	ID=gene-A8144_13620;Name=A8144_13620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13620
LYPH01000083.1	Protein Homology	CDS	3592	3861	.	+	0	ID=cds-OAR19716.1;Parent=gene-A8144_13620;Dbxref=NCBI_GP:OAR19716.1;Name=OAR19716.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q1BA77.1;locus_tag=A8144_13620;product=30S ribosomal protein S15;protein_id=OAR19716.1;transl_table=11
LYPH01000083.1	Genbank	gene	4183	6504	.	+	.	ID=gene-A8144_13625;Name=A8144_13625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13625
LYPH01000083.1	Protein Homology	CDS	4183	6504	.	+	0	ID=cds-OAR19718.1;Parent=gene-A8144_13625;Dbxref=NCBI_GP:OAR19718.1;Name=OAR19718.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CCF8.1;locus_tag=A8144_13625;product=polyribonucleotide nucleotidyltransferase;protein_id=OAR19718.1;transl_table=11
LYPH01000083.1	Genbank	gene	6593	7867	.	+	.	ID=gene-A8144_13630;Name=A8144_13630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13630
LYPH01000083.1	Protein Homology	CDS	6593	7867	.	+	0	ID=cds-OAR19719.1;Parent=gene-A8144_13630;Dbxref=NCBI_GP:OAR19719.1;Name=OAR19719.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907968.1;locus_tag=A8144_13630;product=zinc protease;protein_id=OAR19719.1;transl_table=11
LYPH01000083.1	Genbank	pseudogene	7872	8896	.	+	.	ID=gene-A8144_13635;Name=A8144_13635;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13635;pseudo=true
LYPH01000083.1	Protein Homology	CDS	7872	8896	.	+	0	ID=cds-A8144_13635;Parent=gene-A8144_13635;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015628410.1;locus_tag=A8144_13635;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region LYPH01000084.1 1 9174
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000084.1	Genbank	region	1	9174	.	+	.	ID=LYPH01000084.1:1..9174;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000084.1	Genbank	gene	523	951	.	+	.	ID=gene-A8144_13640;Name=A8144_13640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13640
LYPH01000084.1	GeneMarkS+	CDS	523	951	.	+	0	ID=cds-OAR19705.1;Parent=gene-A8144_13640;Dbxref=NCBI_GP:OAR19705.1;Name=OAR19705.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13640;product=hypothetical protein;protein_id=OAR19705.1;transl_table=11
LYPH01000084.1	Genbank	gene	1447	1857	.	+	.	ID=gene-A8144_13645;Name=A8144_13645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13645
LYPH01000084.1	GeneMarkS+	CDS	1447	1857	.	+	0	ID=cds-OAR19706.1;Parent=gene-A8144_13645;Dbxref=NCBI_GP:OAR19706.1;Name=OAR19706.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13645;product=hypothetical protein;protein_id=OAR19706.1;transl_table=11
LYPH01000084.1	Genbank	gene	1860	2084	.	+	.	ID=gene-A8144_13650;Name=A8144_13650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13650
LYPH01000084.1	GeneMarkS+	CDS	1860	2084	.	+	0	ID=cds-OAR19707.1;Parent=gene-A8144_13650;Dbxref=NCBI_GP:OAR19707.1;Name=OAR19707.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13650;product=hypothetical protein;protein_id=OAR19707.1;transl_table=11
LYPH01000084.1	Genbank	gene	2132	2560	.	-	.	ID=gene-A8144_13655;Name=A8144_13655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13655
LYPH01000084.1	GeneMarkS+	CDS	2132	2560	.	-	0	ID=cds-OAR19708.1;Parent=gene-A8144_13655;Dbxref=NCBI_GP:OAR19708.1;Name=OAR19708.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13655;product=hypothetical protein;protein_id=OAR19708.1;transl_table=11
LYPH01000084.1	Genbank	pseudogene	2584	3095	.	+	.	ID=gene-A8144_13660;Name=A8144_13660;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13660;pseudo=true
LYPH01000084.1	Protein Homology	CDS	2584	3095	.	+	0	ID=cds-A8144_13660;Parent=gene-A8144_13660;Note=frameshifted;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014585455.1;locus_tag=A8144_13660;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000084.1	Genbank	gene	3061	4002	.	-	.	ID=gene-A8144_13665;Name=A8144_13665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13665
LYPH01000084.1	Protein Homology	CDS	3061	4002	.	-	0	ID=cds-OAR19714.1;Parent=gene-A8144_13665;Dbxref=NCBI_GP:OAR19714.1;Name=OAR19714.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_017351229.1;locus_tag=A8144_13665;product=prephenate dehydrogenase;protein_id=OAR19714.1;transl_table=11
LYPH01000084.1	Genbank	gene	4134	4655	.	+	.	ID=gene-A8144_13670;Name=A8144_13670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13670
LYPH01000084.1	Protein Homology	CDS	4134	4655	.	+	0	ID=cds-OAR19709.1;Parent=gene-A8144_13670;Dbxref=NCBI_GP:OAR19709.1;Name=OAR19709.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003899676.1;locus_tag=A8144_13670;product=tRNA adenosine deaminase;protein_id=OAR19709.1;transl_table=11
LYPH01000084.1	Genbank	gene	4670	5185	.	+	.	ID=gene-A8144_13675;Name=A8144_13675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13675
LYPH01000084.1	Protein Homology	CDS	4670	5185	.	+	0	ID=cds-OAR19715.1;Parent=gene-A8144_13675;Dbxref=NCBI_GP:OAR19715.1;Name=OAR19715.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908921.1;locus_tag=A8144_13675;product=tRNA-specific adenosine deaminase;protein_id=OAR19715.1;transl_table=11
LYPH01000084.1	Genbank	gene	5202	5292	.	+	.	ID=gene-A8144_13680;Name=A8144_13680;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_13680
LYPH01000084.1	tRNAscan-SE	tRNA	5202	5292	.	+	.	ID=rna-A8144_13680;Parent=gene-A8144_13680;anticodon=(pos:5236..5238);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_13680;product=tRNA-Ser
LYPH01000084.1	tRNAscan-SE	exon	5202	5292	.	+	.	ID=exon-A8144_13680-1;Parent=rna-A8144_13680;anticodon=(pos:5236..5238);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_13680;product=tRNA-Ser
LYPH01000084.1	Genbank	pseudogene	5347	6283	.	-	.	ID=gene-A8144_13685;Name=A8144_13685;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13685;pseudo=true
LYPH01000084.1	Protein Homology	CDS	5347	6283	.	-	0	ID=cds-A8144_13685;Parent=gene-A8144_13685;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003411688.1;locus_tag=A8144_13685;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000084.1	Genbank	gene	6543	6710	.	-	.	ID=gene-A8144_13690;Name=A8144_13690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13690
LYPH01000084.1	Protein Homology	CDS	6543	6710	.	-	0	ID=cds-OAR19710.1;Parent=gene-A8144_13690;Dbxref=NCBI_GP:OAR19710.1;Name=OAR19710.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908922.1;locus_tag=A8144_13690;product=hypothetical protein;protein_id=OAR19710.1;transl_table=11
LYPH01000084.1	Genbank	gene	6978	7295	.	-	.	ID=gene-A8144_13695;Name=A8144_13695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13695
LYPH01000084.1	GeneMarkS+	CDS	6978	7295	.	-	0	ID=cds-OAR19711.1;Parent=gene-A8144_13695;Dbxref=NCBI_GP:OAR19711.1;Name=OAR19711.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13695;product=hypothetical protein;protein_id=OAR19711.1;transl_table=11
LYPH01000084.1	Genbank	gene	7839	8084	.	+	.	ID=gene-A8144_13700;Name=A8144_13700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13700
LYPH01000084.1	GeneMarkS+	CDS	7839	8084	.	+	0	ID=cds-OAR19712.1;Parent=gene-A8144_13700;Dbxref=NCBI_GP:OAR19712.1;Name=OAR19712.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13700;product=hypothetical protein;protein_id=OAR19712.1;transl_table=11
LYPH01000084.1	Genbank	gene	8655	9044	.	-	.	ID=gene-A8144_13705;Name=A8144_13705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13705
LYPH01000084.1	Protein Homology	CDS	8655	9044	.	-	0	ID=cds-OAR19713.1;Parent=gene-A8144_13705;Dbxref=NCBI_GP:OAR19713.1;Name=OAR19713.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908923.1;locus_tag=A8144_13705;product=hypothetical protein;protein_id=OAR19713.1;transl_table=11
##sequence-region LYPH01000085.1 1 8768
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000085.1	Genbank	region	1	8768	.	+	.	ID=LYPH01000085.1:1..8768;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000085.1	Genbank	pseudogene	1099	2545	.	-	.	ID=gene-A8144_13710;Name=A8144_13710;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13710;pseudo=true
LYPH01000085.1	Protein Homology	CDS	1099	2545	.	-	0	ID=cds-A8144_13710;Parent=gene-A8144_13710;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014382632.1;locus_tag=A8144_13710;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000085.1	Genbank	pseudogene	3154	3801	.	-	.	ID=gene-A8144_13715;Name=A8144_13715;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13715;pseudo=true
LYPH01000085.1	Protein Homology	CDS	3154	3801	.	-	0	ID=cds-A8144_13715;Parent=gene-A8144_13715;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_019972841.1;locus_tag=A8144_13715;product=TetR family transcriptional regulator;pseudo=true;transl_table=11
LYPH01000085.1	Genbank	pseudogene	5143	6073	.	-	.	ID=gene-A8144_13720;Name=A8144_13720;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13720;pseudo=true
LYPH01000085.1	Protein Homology	CDS	5143	6073	.	-	0	ID=cds-A8144_13720;Parent=gene-A8144_13720;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007771399.1;locus_tag=A8144_13720;product=C-5 sterol desaturase;pseudo=true;transl_table=11
LYPH01000085.1	Genbank	gene	6516	6977	.	+	.	ID=gene-A8144_13725;Name=A8144_13725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13725
LYPH01000085.1	GeneMarkS+	CDS	6516	6977	.	+	0	ID=cds-OAR19703.1;Parent=gene-A8144_13725;Dbxref=NCBI_GP:OAR19703.1;Name=OAR19703.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13725;product=hypothetical protein;protein_id=OAR19703.1;transl_table=11
LYPH01000085.1	Genbank	pseudogene	7171	7843	.	-	.	ID=gene-A8144_13730;Name=A8144_13730;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13730;pseudo=true
LYPH01000085.1	Protein Homology	CDS	7171	7843	.	-	0	ID=cds-A8144_13730;Parent=gene-A8144_13730;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003909518.1;locus_tag=A8144_13730;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000085.1	Genbank	gene	8050	8334	.	-	.	ID=gene-A8144_13735;Name=A8144_13735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13735
LYPH01000085.1	Protein Homology	CDS	8050	8334	.	-	0	ID=cds-OAR19704.1;Parent=gene-A8144_13735;Dbxref=NCBI_GP:OAR19704.1;Name=OAR19704.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908034.1;locus_tag=A8144_13735;product=hypothetical protein;protein_id=OAR19704.1;transl_table=11
##sequence-region LYPH01000086.1 1 7979
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000086.1	Genbank	region	1	7979	.	+	.	ID=LYPH01000086.1:1..7979;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000086.1	Genbank	gene	1609	1950	.	+	.	ID=gene-A8144_13740;Name=A8144_13740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13740
LYPH01000086.1	GeneMarkS+	CDS	1609	1950	.	+	0	ID=cds-OAR19696.1;Parent=gene-A8144_13740;Dbxref=NCBI_GP:OAR19696.1;Name=OAR19696.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13740;product=hypothetical protein;protein_id=OAR19696.1;transl_table=11
LYPH01000086.1	Genbank	gene	2257	3621	.	-	.	ID=gene-A8144_13745;Name=A8144_13745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13745
LYPH01000086.1	Protein Homology	CDS	2257	3621	.	-	0	ID=cds-OAR19697.1;Parent=gene-A8144_13745;Dbxref=NCBI_GP:OAR19697.1;Name=OAR19697.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908618.1;locus_tag=A8144_13745;product=serine hydrolase;protein_id=OAR19697.1;transl_table=11
LYPH01000086.1	Genbank	gene	3596	3913	.	-	.	ID=gene-A8144_13750;Name=A8144_13750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13750
LYPH01000086.1	Protein Homology	CDS	3596	3913	.	-	0	ID=cds-OAR19698.1;Parent=gene-A8144_13750;Dbxref=NCBI_GP:OAR19698.1;Name=OAR19698.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908617.1;locus_tag=A8144_13750;product=monooxygenase;protein_id=OAR19698.1;transl_table=11
LYPH01000086.1	Genbank	gene	4039	4809	.	+	.	ID=gene-A8144_13755;Name=A8144_13755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13755
LYPH01000086.1	Protein Homology	CDS	4039	4809	.	+	0	ID=cds-OAR19699.1;Parent=gene-A8144_13755;Dbxref=NCBI_GP:OAR19699.1;Name=OAR19699.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908616.1;locus_tag=A8144_13755;product=alpha/beta hydrolase;protein_id=OAR19699.1;transl_table=11
LYPH01000086.1	Genbank	gene	4818	5711	.	-	.	ID=gene-A8144_13760;Name=A8144_13760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13760
LYPH01000086.1	Protein Homology	CDS	4818	5711	.	-	0	ID=cds-OAR19700.1;Parent=gene-A8144_13760;Dbxref=NCBI_GP:OAR19700.1;Name=OAR19700.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908615.1;locus_tag=A8144_13760;product=adenine glycosylase;protein_id=OAR19700.1;transl_table=11
LYPH01000086.1	Genbank	gene	5710	6351	.	+	.	ID=gene-A8144_13765;Name=A8144_13765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13765
LYPH01000086.1	Protein Homology	CDS	5710	6351	.	+	0	ID=cds-OAR19701.1;Parent=gene-A8144_13765;Dbxref=NCBI_GP:OAR19701.1;Name=OAR19701.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908614.1;locus_tag=A8144_13765;product=carbonic anhydrase;protein_id=OAR19701.1;transl_table=11
LYPH01000086.1	Genbank	gene	6466	7281	.	+	.	ID=gene-A8144_13770;Name=A8144_13770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13770
LYPH01000086.1	Protein Homology	CDS	6466	7281	.	+	0	ID=cds-OAR19702.1;Parent=gene-A8144_13770;Dbxref=NCBI_GP:OAR19702.1;Name=OAR19702.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003875629.1;locus_tag=A8144_13770;product=hypothetical protein;protein_id=OAR19702.1;transl_table=11
##sequence-region LYPH01000087.1 1 7365
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000087.1	Genbank	region	1	7365	.	+	.	ID=LYPH01000087.1:1..7365;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000087.1	Genbank	gene	141	398	.	+	.	ID=gene-A8144_13775;Name=A8144_13775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13775
LYPH01000087.1	GeneMarkS+	CDS	141	398	.	+	0	ID=cds-OAR19690.1;Parent=gene-A8144_13775;Dbxref=NCBI_GP:OAR19690.1;Name=OAR19690.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13775;product=hypothetical protein;protein_id=OAR19690.1;transl_table=11
LYPH01000087.1	Genbank	pseudogene	906	2670	.	+	.	ID=gene-A8144_13780;Name=A8144_13780;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13780;pseudo=true
LYPH01000087.1	Protein Homology	CDS	906	2670	.	+	0	ID=cds-A8144_13780;Parent=gene-A8144_13780;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009974516.1;locus_tag=A8144_13780;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000087.1	Genbank	gene	2888	3085	.	-	.	ID=gene-A8144_13785;Name=A8144_13785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13785
LYPH01000087.1	GeneMarkS+	CDS	2888	3085	.	-	0	ID=cds-OAR19691.1;Parent=gene-A8144_13785;Dbxref=NCBI_GP:OAR19691.1;Name=OAR19691.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13785;product=hypothetical protein;protein_id=OAR19691.1;transl_table=11
LYPH01000087.1	Genbank	gene	3087	3506	.	-	.	ID=gene-A8144_13790;Name=A8144_13790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13790
LYPH01000087.1	GeneMarkS+	CDS	3087	3506	.	-	0	ID=cds-OAR19692.1;Parent=gene-A8144_13790;Dbxref=NCBI_GP:OAR19692.1;Name=OAR19692.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13790;product=hypothetical protein;protein_id=OAR19692.1;transl_table=11
LYPH01000087.1	Genbank	pseudogene	4351	4957	.	+	.	ID=gene-A8144_13795;Name=A8144_13795;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13795;pseudo=true
LYPH01000087.1	Protein Homology	CDS	4351	4957	.	+	0	ID=cds-A8144_13795;Parent=gene-A8144_13795;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003876985.1;locus_tag=A8144_13795;product=phosphoglycerate kinase;pseudo=true;transl_table=11
LYPH01000087.1	Genbank	gene	5083	5328	.	+	.	ID=gene-A8144_13800;Name=A8144_13800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13800
LYPH01000087.1	GeneMarkS+	CDS	5083	5328	.	+	0	ID=cds-OAR19693.1;Parent=gene-A8144_13800;Dbxref=NCBI_GP:OAR19693.1;Name=OAR19693.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13800;product=hypothetical protein;protein_id=OAR19693.1;transl_table=11
LYPH01000087.1	Genbank	gene	5738	6100	.	+	.	ID=gene-A8144_13805;Name=A8144_13805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13805
LYPH01000087.1	GeneMarkS+	CDS	5738	6100	.	+	0	ID=cds-OAR19694.1;Parent=gene-A8144_13805;Dbxref=NCBI_GP:OAR19694.1;Name=OAR19694.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13805;product=hypothetical protein;protein_id=OAR19694.1;transl_table=11
LYPH01000087.1	Genbank	gene	6069	6410	.	-	.	ID=gene-A8144_13810;Name=A8144_13810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13810
LYPH01000087.1	Protein Homology	CDS	6069	6410	.	-	0	ID=cds-OAR19695.1;Parent=gene-A8144_13810;Dbxref=NCBI_GP:OAR19695.1;Name=OAR19695.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908859.1;locus_tag=A8144_13810;product=hypothetical protein;protein_id=OAR19695.1;transl_table=11
LYPH01000087.1	Genbank	pseudogene	7102	7365	.	+	.	ID=gene-A8144_13815;Name=A8144_13815;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13815;pseudo=true
LYPH01000087.1	GeneMarkS+	CDS	7102	7365	.	+	0	ID=cds-A8144_13815;Parent=gene-A8144_13815;Note=incomplete%3B too short partial abutting assembly gap%3B missing stop;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13815;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region LYPH01000088.1 1 87902
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000088.1	Genbank	region	1	87902	.	+	.	ID=LYPH01000088.1:1..87902;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000088.1	Genbank	pseudogene	148	1292	.	-	.	ID=gene-A8144_04135;Name=A8144_04135;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04135;pseudo=true
LYPH01000088.1	Protein Homology	CDS	148	1292	.	-	0	ID=cds-A8144_04135;Parent=gene-A8144_04135;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014712246.1;locus_tag=A8144_04135;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000088.1	Genbank	gene	1516	2667	.	+	.	ID=gene-A8144_04140;Name=A8144_04140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04140
LYPH01000088.1	Protein Homology	CDS	1516	2667	.	+	0	ID=cds-OAR19630.1;Parent=gene-A8144_04140;Dbxref=NCBI_GP:OAR19630.1;Name=OAR19630.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011724136.1;locus_tag=A8144_04140;product=DNA repair exonuclease;protein_id=OAR19630.1;transl_table=11
LYPH01000088.1	Genbank	gene	2664	5285	.	+	.	ID=gene-A8144_04145;Name=A8144_04145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04145
LYPH01000088.1	Protein Homology	CDS	2664	5285	.	+	0	ID=cds-OAR19631.1;Parent=gene-A8144_04145;Dbxref=NCBI_GP:OAR19631.1;Name=OAR19631.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908140.1;locus_tag=A8144_04145;product=hypothetical protein;protein_id=OAR19631.1;transl_table=11
LYPH01000088.1	Genbank	pseudogene	5374	6486	.	+	.	ID=gene-A8144_04150;Name=A8144_04150;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04150;pseudo=true
LYPH01000088.1	Protein Homology	CDS	5374	6486	.	+	0	ID=cds-A8144_04150;Parent=gene-A8144_04150;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009955263.1;locus_tag=A8144_04150;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000088.1	Genbank	gene	6473	8140	.	-	.	ID=gene-A8144_04155;Name=A8144_04155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04155
LYPH01000088.1	Protein Homology	CDS	6473	8140	.	-	0	ID=cds-OAR19632.1;Parent=gene-A8144_04155;Dbxref=NCBI_GP:OAR19632.1;Name=OAR19632.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014941491.1;locus_tag=A8144_04155;product=hypothetical protein;protein_id=OAR19632.1;transl_table=11
LYPH01000088.1	Genbank	gene	8143	9972	.	-	.	ID=gene-A8144_04160;Name=A8144_04160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04160
LYPH01000088.1	Protein Homology	CDS	8143	9972	.	-	0	ID=cds-OAR19633.1;Parent=gene-A8144_04160;Dbxref=NCBI_GP:OAR19633.1;Name=OAR19633.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908142.1;locus_tag=A8144_04160;product=peptide ABC transporter ATP-binding protein;protein_id=OAR19633.1;transl_table=11
LYPH01000088.1	Genbank	gene	9969	10868	.	-	.	ID=gene-A8144_04165;Name=A8144_04165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04165
LYPH01000088.1	Protein Homology	CDS	9969	10868	.	-	0	ID=cds-OAR19634.1;Parent=gene-A8144_04165;Dbxref=NCBI_GP:OAR19634.1;Name=OAR19634.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908143.1;locus_tag=A8144_04165;product=peptide ABC transporter permease;protein_id=OAR19634.1;transl_table=11
LYPH01000088.1	Genbank	gene	10865	11842	.	-	.	ID=gene-A8144_04170;Name=A8144_04170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04170
LYPH01000088.1	Protein Homology	CDS	10865	11842	.	-	0	ID=cds-OAR19635.1;Parent=gene-A8144_04170;Dbxref=NCBI_GP:OAR19635.1;Name=OAR19635.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_018599038.1;locus_tag=A8144_04170;product=peptide ABC transporter permease;protein_id=OAR19635.1;transl_table=11
LYPH01000088.1	Genbank	gene	13076	13255	.	+	.	ID=gene-A8144_04175;Name=A8144_04175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04175
LYPH01000088.1	GeneMarkS+	CDS	13076	13255	.	+	0	ID=cds-OAR19636.1;Parent=gene-A8144_04175;Dbxref=NCBI_GP:OAR19636.1;Name=OAR19636.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04175;product=hypothetical protein;protein_id=OAR19636.1;transl_table=11
LYPH01000088.1	Genbank	gene	16401	16604	.	-	.	ID=gene-A8144_04180;Name=A8144_04180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04180
LYPH01000088.1	GeneMarkS+	CDS	16401	16604	.	-	0	ID=cds-OAR19637.1;Parent=gene-A8144_04180;Dbxref=NCBI_GP:OAR19637.1;Name=OAR19637.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04180;product=hypothetical protein;protein_id=OAR19637.1;transl_table=11
LYPH01000088.1	Genbank	gene	20635	20829	.	-	.	ID=gene-A8144_04185;Name=A8144_04185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04185
LYPH01000088.1	GeneMarkS+	CDS	20635	20829	.	-	0	ID=cds-OAR19638.1;Parent=gene-A8144_04185;Dbxref=NCBI_GP:OAR19638.1;Name=OAR19638.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04185;product=hypothetical protein;protein_id=OAR19638.1;transl_table=11
LYPH01000088.1	Genbank	gene	23051	23126	.	-	.	ID=gene-A8144_04190;Name=A8144_04190;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_04190
LYPH01000088.1	tRNAscan-SE	tRNA	23051	23126	.	-	.	ID=rna-A8144_04190;Parent=gene-A8144_04190;anticodon=(pos:complement(23091..23093));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_04190;product=tRNA-Arg
LYPH01000088.1	tRNAscan-SE	exon	23051	23126	.	-	.	ID=exon-A8144_04190-1;Parent=rna-A8144_04190;anticodon=(pos:complement(23091..23093));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_04190;product=tRNA-Arg
LYPH01000088.1	Genbank	gene	23322	24974	.	+	.	ID=gene-A8144_04195;Name=A8144_04195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04195
LYPH01000088.1	Protein Homology	CDS	23322	24974	.	+	0	ID=cds-OAR19683.1;Parent=gene-A8144_04195;Dbxref=NCBI_GP:OAR19683.1;Name=OAR19683.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003931011.1;locus_tag=A8144_04195;product=arginine--tRNA ligase;protein_id=OAR19683.1;transl_table=11
LYPH01000088.1	Genbank	gene	24971	26389	.	+	.	ID=gene-A8144_04200;Name=A8144_04200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04200
LYPH01000088.1	Protein Homology	CDS	24971	26389	.	+	0	ID=cds-OAR19639.1;Parent=gene-A8144_04200;Dbxref=NCBI_GP:OAR19639.1;Name=OAR19639.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003873237.1;locus_tag=A8144_04200;product=diaminopimelate decarboxylase;protein_id=OAR19639.1;transl_table=11
LYPH01000088.1	Genbank	gene	26393	27718	.	+	.	ID=gene-A8144_04205;Name=A8144_04205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04205
LYPH01000088.1	Protein Homology	CDS	26393	27718	.	+	0	ID=cds-OAR19640.1;Parent=gene-A8144_04205;Dbxref=NCBI_GP:OAR19640.1;Name=OAR19640.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46806.1;locus_tag=A8144_04205;product=homoserine dehydrogenase;protein_id=OAR19640.1;transl_table=11
LYPH01000088.1	Genbank	gene	27715	28797	.	+	.	ID=gene-A8144_04210;Name=A8144_04210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04210
LYPH01000088.1	Protein Homology	CDS	27715	28797	.	+	0	ID=cds-OAR19641.1;Parent=gene-A8144_04210;Dbxref=NCBI_GP:OAR19641.1;Name=OAR19641.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P45837.1;locus_tag=A8144_04210;product=threonine synthase;protein_id=OAR19641.1;transl_table=11
LYPH01000088.1	Genbank	gene	28877	29812	.	+	.	ID=gene-A8144_04215;Name=A8144_04215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04215
LYPH01000088.1	Protein Homology	CDS	28877	29812	.	+	0	ID=cds-OAR19684.1;Parent=gene-A8144_04215;Dbxref=NCBI_GP:OAR19684.1;Name=OAR19684.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003873234.1;locus_tag=A8144_04215;product=homoserine kinase;protein_id=OAR19684.1;transl_table=11
LYPH01000088.1	Genbank	gene	30082	31914	.	+	.	ID=gene-A8144_04220;Name=A8144_04220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04220
LYPH01000088.1	Protein Homology	CDS	30082	31914	.	+	0	ID=cds-OAR19642.1;Parent=gene-A8144_04220;Dbxref=NCBI_GP:OAR19642.1;Name=OAR19642.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012634428.1;locus_tag=A8144_04220;product=transcription termination factor Rho;protein_id=OAR19642.1;transl_table=11
LYPH01000088.1	Genbank	gene	32225	32479	.	+	.	ID=gene-A8144_04225;Name=A8144_04225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04225
LYPH01000088.1	Protein Homology	CDS	32225	32479	.	+	0	ID=cds-OAR19643.1;Parent=gene-A8144_04225;Dbxref=NCBI_GP:OAR19643.1;Name=OAR19643.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P45834.1;locus_tag=A8144_04225;product=50S ribosomal protein L31;protein_id=OAR19643.1;transl_table=11
LYPH01000088.1	Genbank	gene	32570	33655	.	+	.	ID=gene-A8144_04230;Name=A8144_04230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04230
LYPH01000088.1	Protein Homology	CDS	32570	33655	.	+	0	ID=cds-OAR19644.1;Parent=gene-A8144_04230;Dbxref=NCBI_GP:OAR19644.1;Name=OAR19644.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P45833.2;locus_tag=A8144_04230;product=peptide chain release factor 1;protein_id=OAR19644.1;transl_table=11
LYPH01000088.1	Genbank	gene	33652	34518	.	+	.	ID=gene-A8144_04235;Name=A8144_04235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04235
LYPH01000088.1	Protein Homology	CDS	33652	34518	.	+	0	ID=cds-OAR19645.1;Parent=gene-A8144_04235;Dbxref=NCBI_GP:OAR19645.1;Name=OAR19645.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P45832.2;locus_tag=A8144_04235;product=protein-(glutamine-N5) methyltransferase%2C release factor-specific;protein_id=OAR19645.1;transl_table=11
LYPH01000088.1	Genbank	gene	34567	35220	.	+	.	ID=gene-A8144_04240;Name=A8144_04240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04240
LYPH01000088.1	Protein Homology	CDS	34567	35220	.	+	0	ID=cds-OAR19646.1;Parent=gene-A8144_04240;Dbxref=NCBI_GP:OAR19646.1;Name=OAR19646.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008254793.1;locus_tag=A8144_04240;product=threonylcarbamoyl-AMP synthase;protein_id=OAR19646.1;transl_table=11
LYPH01000088.1	Genbank	gene	35272	36450	.	+	.	ID=gene-A8144_04245;Name=A8144_04245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04245
LYPH01000088.1	Protein Homology	CDS	35272	36450	.	+	0	ID=cds-OAR19685.1;Parent=gene-A8144_04245;Dbxref=NCBI_GP:OAR19685.1;Name=OAR19685.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014379593.1;locus_tag=A8144_04245;product=undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase;protein_id=OAR19685.1;transl_table=11
LYPH01000088.1	Genbank	gene	36713	37174	.	+	.	ID=gene-A8144_04250;Name=A8144_04250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04250
LYPH01000088.1	Protein Homology	CDS	36713	37174	.	+	0	ID=cds-OAR19647.1;Parent=gene-A8144_04250;Dbxref=NCBI_GP:OAR19647.1;Name=OAR19647.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P53431.1;locus_tag=A8144_04250;product=hypothetical protein;protein_id=OAR19647.1;transl_table=11
LYPH01000088.1	Genbank	gene	37171	37926	.	+	.	ID=gene-A8144_04255;Name=A8144_04255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04255
LYPH01000088.1	Protein Homology	CDS	37171	37926	.	+	0	ID=cds-OAR19648.1;Parent=gene-A8144_04255;Dbxref=NCBI_GP:OAR19648.1;Name=OAR19648.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008254800.1;locus_tag=A8144_04255;product=F0F1 ATP synthase subunit A;protein_id=OAR19648.1;transl_table=11
LYPH01000088.1	Genbank	gene	38022	38267	.	+	.	ID=gene-A8144_04260;Name=A8144_04260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04260
LYPH01000088.1	Protein Homology	CDS	38022	38267	.	+	0	ID=cds-OAR19649.1;Parent=gene-A8144_04260;Dbxref=NCBI_GP:OAR19649.1;Name=OAR19649.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:B2HQK7.1;locus_tag=A8144_04260;product=ATP synthase F0 subunit C;protein_id=OAR19649.1;transl_table=11
LYPH01000088.1	Genbank	gene	38289	38801	.	+	.	ID=gene-A8144_04265;Name=A8144_04265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04265
LYPH01000088.1	Protein Homology	CDS	38289	38801	.	+	0	ID=cds-OAR19650.1;Parent=gene-A8144_04265;Dbxref=NCBI_GP:OAR19650.1;Name=OAR19650.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P45827.1;locus_tag=A8144_04265;product=F0F1 ATP synthase subunit B;protein_id=OAR19650.1;transl_table=11
LYPH01000088.1	Genbank	gene	38807	40147	.	+	.	ID=gene-A8144_04270;Name=A8144_04270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04270
LYPH01000088.1	Protein Homology	CDS	38807	40147	.	+	0	ID=cds-OAR19651.1;Parent=gene-A8144_04270;Dbxref=NCBI_GP:OAR19651.1;Name=OAR19651.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009955320.1;locus_tag=A8144_04270;product=F0F1 ATP synthase subunit B/delta;protein_id=OAR19651.1;transl_table=11
LYPH01000088.1	Genbank	gene	40209	41885	.	+	.	ID=gene-A8144_04275;Name=A8144_04275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04275
LYPH01000088.1	Protein Homology	CDS	40209	41885	.	+	0	ID=cds-OAR19652.1;Parent=gene-A8144_04275;Dbxref=NCBI_GP:OAR19652.1;Name=OAR19652.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P45825.1;locus_tag=A8144_04275;product=F0F1 ATP synthase subunit alpha;protein_id=OAR19652.1;transl_table=11
LYPH01000088.1	Genbank	gene	41903	42799	.	+	.	ID=gene-A8144_04280;Name=A8144_04280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04280
LYPH01000088.1	Protein Homology	CDS	41903	42799	.	+	0	ID=cds-OAR19653.1;Parent=gene-A8144_04280;Dbxref=NCBI_GP:OAR19653.1;Name=OAR19653.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007169272.1;locus_tag=A8144_04280;product=F0F1 ATP synthase subunit gamma;protein_id=OAR19653.1;transl_table=11
LYPH01000088.1	Genbank	gene	42826	44283	.	+	.	ID=gene-A8144_04285;Name=A8144_04285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04285
LYPH01000088.1	Protein Homology	CDS	42826	44283	.	+	0	ID=cds-OAR19654.1;Parent=gene-A8144_04285;Dbxref=NCBI_GP:OAR19654.1;Name=OAR19654.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P45823.1;locus_tag=A8144_04285;product=F0F1 ATP synthase subunit beta;protein_id=OAR19654.1;transl_table=11
LYPH01000088.1	Genbank	gene	44316	44681	.	+	.	ID=gene-A8144_04290;Name=A8144_04290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04290
LYPH01000088.1	Protein Homology	CDS	44316	44681	.	+	0	ID=cds-OAR19655.1;Parent=gene-A8144_04290;Dbxref=NCBI_GP:OAR19655.1;Name=OAR19655.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008254826.1;locus_tag=A8144_04290;product=F0F1 ATP synthase subunit epsilon;protein_id=OAR19655.1;transl_table=11
LYPH01000088.1	Genbank	gene	44688	45131	.	+	.	ID=gene-A8144_04295;Name=A8144_04295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04295
LYPH01000088.1	Protein Homology	CDS	44688	45131	.	+	0	ID=cds-OAR19656.1;Parent=gene-A8144_04295;Dbxref=NCBI_GP:OAR19656.1;Name=OAR19656.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908165.1;locus_tag=A8144_04295;product=hypothetical protein;protein_id=OAR19656.1;transl_table=11
LYPH01000088.1	Genbank	gene	45270	45425	.	-	.	ID=gene-A8144_04300;Name=A8144_04300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04300
LYPH01000088.1	Protein Homology	CDS	45270	45425	.	-	0	ID=cds-OAR19657.1;Parent=gene-A8144_04300;Dbxref=NCBI_GP:OAR19657.1;Name=OAR19657.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908166.1;locus_tag=A8144_04300;product=hypothetical protein;protein_id=OAR19657.1;transl_table=11
LYPH01000088.1	Genbank	gene	45638	46213	.	-	.	ID=gene-A8144_04305;Name=A8144_04305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04305
LYPH01000088.1	Protein Homology	CDS	45638	46213	.	-	0	ID=cds-OAR19658.1;Parent=gene-A8144_04305;Dbxref=NCBI_GP:OAR19658.1;Name=OAR19658.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P53523.1;locus_tag=A8144_04305;product=ATP:cob(I)alamin adenosyltransferase;protein_id=OAR19658.1;transl_table=11
LYPH01000088.1	Genbank	gene	46331	47587	.	+	.	ID=gene-A8144_04310;Name=A8144_04310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04310
LYPH01000088.1	Protein Homology	CDS	46331	47587	.	+	0	ID=cds-OAR19659.1;Parent=gene-A8144_04310;Dbxref=NCBI_GP:OAR19659.1;Name=OAR19659.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P45821.1;locus_tag=A8144_04310;product=UDP-N-acetylglucosamine 1-carboxyvinyltransferase;protein_id=OAR19659.1;transl_table=11
LYPH01000088.1	Genbank	gene	47893	49449	.	+	.	ID=gene-A8144_04315;Name=A8144_04315;gbkey=Gene;gene_biotype=rRNA;locus_tag=A8144_04315
LYPH01000088.1	Genbank	rRNA	47893	49449	.	+	.	ID=rna-A8144_04315;Parent=gene-A8144_04315;gbkey=rRNA;locus_tag=A8144_04315;product=16S ribosomal RNA
LYPH01000088.1	Genbank	exon	47893	49449	.	+	.	ID=exon-A8144_04315-1;Parent=rna-A8144_04315;gbkey=rRNA;locus_tag=A8144_04315;product=16S ribosomal RNA
LYPH01000088.1	Genbank	gene	49726	52856	.	+	.	ID=gene-A8144_04320;Name=A8144_04320;gbkey=Gene;gene_biotype=rRNA;locus_tag=A8144_04320
LYPH01000088.1	Genbank	rRNA	49726	52856	.	+	.	ID=rna-A8144_04320;Parent=gene-A8144_04320;gbkey=rRNA;locus_tag=A8144_04320;product=23S ribosomal RNA
LYPH01000088.1	Genbank	exon	49726	52856	.	+	.	ID=exon-A8144_04320-1;Parent=rna-A8144_04320;gbkey=rRNA;locus_tag=A8144_04320;product=23S ribosomal RNA
LYPH01000088.1	Genbank	gene	52939	53051	.	+	.	ID=gene-A8144_04325;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=A8144_04325
LYPH01000088.1	cmsearch	rRNA	52939	53051	.	+	.	ID=rna-A8144_04325;Parent=gene-A8144_04325;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=A8144_04325;product=5S ribosomal RNA
LYPH01000088.1	cmsearch	exon	52939	53051	.	+	.	ID=exon-A8144_04325-1;Parent=rna-A8144_04325;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=A8144_04325;product=5S ribosomal RNA
LYPH01000088.1	Genbank	gene	53111	53608	.	-	.	ID=gene-A8144_04330;Name=A8144_04330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04330
LYPH01000088.1	Protein Homology	CDS	53111	53608	.	-	0	ID=cds-OAR19660.1;Parent=gene-A8144_04330;Dbxref=NCBI_GP:OAR19660.1;Name=OAR19660.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P52982.1;locus_tag=A8144_04330;product=cysteine methyltransferase;protein_id=OAR19660.1;transl_table=11
LYPH01000088.1	Genbank	gene	53888	54100	.	-	.	ID=gene-A8144_04335;Name=A8144_04335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04335
LYPH01000088.1	GeneMarkS+	CDS	53888	54100	.	-	0	ID=cds-OAR19661.1;Parent=gene-A8144_04335;Dbxref=NCBI_GP:OAR19661.1;Name=OAR19661.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04335;product=hypothetical protein;protein_id=OAR19661.1;transl_table=11
LYPH01000088.1	Genbank	pseudogene	55251	56423	.	+	.	ID=gene-A8144_04340;Name=A8144_04340;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04340;pseudo=true
LYPH01000088.1	Protein Homology	CDS	55251	56423	.	+	0	ID=cds-A8144_04340;Parent=gene-A8144_04340;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007771735.1;locus_tag=A8144_04340;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000088.1	Genbank	pseudogene	56420	58014	.	-	.	ID=gene-A8144_04345;Name=A8144_04345;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04345;pseudo=true
LYPH01000088.1	Protein Homology	CDS	56420	58014	.	-	0	ID=cds-A8144_04345;Parent=gene-A8144_04345;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007773904.1;locus_tag=A8144_04345;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000088.1	Genbank	gene	58101	58772	.	+	.	ID=gene-A8144_04350;Name=A8144_04350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04350
LYPH01000088.1	Protein Homology	CDS	58101	58772	.	+	0	ID=cds-OAR19662.1;Parent=gene-A8144_04350;Dbxref=NCBI_GP:OAR19662.1;Name=OAR19662.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020788132.1;locus_tag=A8144_04350;product=endonuclease;protein_id=OAR19662.1;transl_table=11
LYPH01000088.1	Genbank	gene	59104	59571	.	-	.	ID=gene-A8144_04355;Name=A8144_04355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04355
LYPH01000088.1	Protein Homology	CDS	59104	59571	.	-	0	ID=cds-OAR19663.1;Parent=gene-A8144_04355;Dbxref=NCBI_GP:OAR19663.1;Name=OAR19663.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008254861.1;locus_tag=A8144_04355;product=methylmalonyl-CoA epimerase;protein_id=OAR19663.1;transl_table=11
LYPH01000088.1	Genbank	gene	59663	60844	.	+	.	ID=gene-A8144_04360;Name=A8144_04360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04360
LYPH01000088.1	Protein Homology	CDS	59663	60844	.	+	0	ID=cds-OAR19664.1;Parent=gene-A8144_04360;Dbxref=NCBI_GP:OAR19664.1;Name=OAR19664.1;Note=Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase%2C catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46707.1;locus_tag=A8144_04360;product=acetyl-CoA acetyltransferase;protein_id=OAR19664.1;transl_table=11
LYPH01000088.1	Genbank	gene	60998	61936	.	+	.	ID=gene-A8144_04365;Name=A8144_04365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04365
LYPH01000088.1	Protein Homology	CDS	60998	61936	.	+	0	ID=cds-OAR19686.1;Parent=gene-A8144_04365;Dbxref=NCBI_GP:OAR19686.1;Name=OAR19686.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014711090.1;locus_tag=A8144_04365;product=co-chaperone YbbN;protein_id=OAR19686.1;transl_table=11
LYPH01000088.1	Genbank	pseudogene	61986	64169	.	-	.	ID=gene-A8144_04370;Name=A8144_04370;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04370;pseudo=true
LYPH01000088.1	Protein Homology	CDS	61986	64169	.	-	0	ID=cds-A8144_04370;Parent=gene-A8144_04370;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008254871.1;locus_tag=A8144_04370;product=1%2C4-alpha-glucan branching enzyme;pseudo=true;transl_table=11
LYPH01000088.1	Genbank	pseudogene	64219	66225	.	-	.	ID=gene-A8144_04375;Name=A8144_04375;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04375;pseudo=true
LYPH01000088.1	Protein Homology	CDS	64219	66225	.	-	0	ID=cds-A8144_04375;Parent=gene-A8144_04375;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015308436.1;locus_tag=A8144_04375;product=alpha-1%2C4-glucan--maltose-1-phosphate maltosyltransferase;pseudo=true;transl_table=11
LYPH01000088.1	Genbank	gene	67121	67351	.	+	.	ID=gene-A8144_04380;Name=A8144_04380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04380
LYPH01000088.1	GeneMarkS+	CDS	67121	67351	.	+	0	ID=cds-OAR19665.1;Parent=gene-A8144_04380;Dbxref=NCBI_GP:OAR19665.1;Name=OAR19665.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04380;product=hypothetical protein;protein_id=OAR19665.1;transl_table=11
LYPH01000088.1	Genbank	gene	67403	67876	.	+	.	ID=gene-A8144_04385;Name=A8144_04385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04385
LYPH01000088.1	GeneMarkS+	CDS	67403	67876	.	+	0	ID=cds-OAR19666.1;Parent=gene-A8144_04385;Dbxref=NCBI_GP:OAR19666.1;Name=OAR19666.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04385;product=hypothetical protein;protein_id=OAR19666.1;transl_table=11
LYPH01000088.1	Genbank	gene	68289	68591	.	+	.	ID=gene-A8144_04390;Name=A8144_04390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04390
LYPH01000088.1	GeneMarkS+	CDS	68289	68591	.	+	0	ID=cds-OAR19667.1;Parent=gene-A8144_04390;Dbxref=NCBI_GP:OAR19667.1;Name=OAR19667.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04390;product=hypothetical protein;protein_id=OAR19667.1;transl_table=11
LYPH01000088.1	Genbank	gene	68656	69048	.	+	.	ID=gene-A8144_04395;Name=A8144_04395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04395
LYPH01000088.1	GeneMarkS+	CDS	68656	69048	.	+	0	ID=cds-OAR19668.1;Parent=gene-A8144_04395;Dbxref=NCBI_GP:OAR19668.1;Name=OAR19668.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04395;product=hypothetical protein;protein_id=OAR19668.1;transl_table=11
LYPH01000088.1	Genbank	gene	70138	70353	.	-	.	ID=gene-A8144_04400;Name=A8144_04400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04400
LYPH01000088.1	GeneMarkS+	CDS	70138	70353	.	-	0	ID=cds-OAR19669.1;Parent=gene-A8144_04400;Dbxref=NCBI_GP:OAR19669.1;Name=OAR19669.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04400;product=hypothetical protein;protein_id=OAR19669.1;transl_table=11
LYPH01000088.1	Genbank	gene	70358	70561	.	-	.	ID=gene-A8144_04405;Name=A8144_04405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04405
LYPH01000088.1	GeneMarkS+	CDS	70358	70561	.	-	0	ID=cds-OAR19670.1;Parent=gene-A8144_04405;Dbxref=NCBI_GP:OAR19670.1;Name=OAR19670.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04405;product=hypothetical protein;protein_id=OAR19670.1;transl_table=11
LYPH01000088.1	Genbank	gene	70695	70967	.	-	.	ID=gene-A8144_04410;Name=A8144_04410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04410
LYPH01000088.1	GeneMarkS+	CDS	70695	70967	.	-	0	ID=cds-OAR19671.1;Parent=gene-A8144_04410;Dbxref=NCBI_GP:OAR19671.1;Name=OAR19671.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04410;product=hypothetical protein;protein_id=OAR19671.1;transl_table=11
LYPH01000088.1	Genbank	gene	71372	71689	.	+	.	ID=gene-A8144_04415;Name=A8144_04415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04415
LYPH01000088.1	Protein Homology	CDS	71372	71689	.	+	0	ID=cds-OAR19687.1;Parent=gene-A8144_04415;Dbxref=NCBI_GP:OAR19687.1;Name=OAR19687.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007773922.1;locus_tag=A8144_04415;product=ATP-dependent Clp protease adapter ClpS;protein_id=OAR19687.1;transl_table=11
LYPH01000088.1	Genbank	gene	71715	72302	.	+	.	ID=gene-A8144_04420;Name=A8144_04420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04420
LYPH01000088.1	Protein Homology	CDS	71715	72302	.	+	0	ID=cds-OAR19672.1;Parent=gene-A8144_04420;Dbxref=NCBI_GP:OAR19672.1;Name=OAR19672.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908175.1;locus_tag=A8144_04420;product=hypothetical protein;protein_id=OAR19672.1;transl_table=11
LYPH01000088.1	Genbank	gene	72323	73390	.	+	.	ID=gene-A8144_04425;Name=A8144_04425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04425
LYPH01000088.1	Protein Homology	CDS	72323	73390	.	+	0	ID=cds-OAR19688.1;Parent=gene-A8144_04425;Dbxref=NCBI_GP:OAR19688.1;Name=OAR19688.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020788121.1;locus_tag=A8144_04425;product=hypothetical protein;protein_id=OAR19688.1;transl_table=11
LYPH01000088.1	Genbank	pseudogene	74150	75151	.	+	.	ID=gene-A8144_04430;Name=cysM;gbkey=Gene;gene=cysM;gene_biotype=pseudogene;locus_tag=A8144_04430;pseudo=true
LYPH01000088.1	Protein Homology	CDS	74150	75151	.	+	0	ID=cds-A8144_04430;Parent=gene-A8144_04430;Note=catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide%3B frameshifted%3B internal stop;gbkey=CDS;gene=cysM;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_016887241.1;locus_tag=A8144_04430;product=cysteine synthase B;pseudo=true;transl_table=11
LYPH01000088.1	Genbank	gene	75243	75959	.	+	.	ID=gene-A8144_04435;Name=A8144_04435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04435
LYPH01000088.1	Protein Homology	CDS	75243	75959	.	+	0	ID=cds-OAR19689.1;Parent=gene-A8144_04435;Dbxref=NCBI_GP:OAR19689.1;Name=OAR19689.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908177.1;locus_tag=A8144_04435;product=rhomboid family intramembrane serine protease;protein_id=OAR19689.1;transl_table=11
LYPH01000088.1	Genbank	gene	75956	76774	.	+	.	ID=gene-A8144_04440;Name=A8144_04440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04440
LYPH01000088.1	Protein Homology	CDS	75956	76774	.	+	0	ID=cds-OAR19673.1;Parent=gene-A8144_04440;Dbxref=NCBI_GP:OAR19673.1;Name=OAR19673.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46705.1;locus_tag=A8144_04440;product=glutamate racemase;protein_id=OAR19673.1;transl_table=11
LYPH01000088.1	Genbank	gene	76847	77629	.	+	.	ID=gene-A8144_04445;Name=A8144_04445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04445
LYPH01000088.1	Protein Homology	CDS	76847	77629	.	+	0	ID=cds-OAR19674.1;Parent=gene-A8144_04445;Dbxref=NCBI_GP:OAR19674.1;Name=OAR19674.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908179.1;locus_tag=A8144_04445;product=hypothetical protein;protein_id=OAR19674.1;transl_table=11
LYPH01000088.1	Genbank	gene	77719	78498	.	+	.	ID=gene-A8144_04450;Name=A8144_04450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04450
LYPH01000088.1	Protein Homology	CDS	77719	78498	.	+	0	ID=cds-OAR19675.1;Parent=gene-A8144_04450;Dbxref=NCBI_GP:OAR19675.1;Name=OAR19675.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007773930.1;locus_tag=A8144_04450;product=ribonuclease PH;protein_id=OAR19675.1;transl_table=11
LYPH01000088.1	Genbank	gene	78533	79195	.	+	.	ID=gene-A8144_04455;Name=A8144_04455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04455
LYPH01000088.1	Protein Homology	CDS	78533	79195	.	+	0	ID=cds-OAR19676.1;Parent=gene-A8144_04455;Dbxref=NCBI_GP:OAR19676.1;Name=OAR19676.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908181.1;locus_tag=A8144_04455;product=non-canonical purine NTP pyrophosphatase;protein_id=OAR19676.1;transl_table=11
LYPH01000088.1	Genbank	gene	79236	79595	.	-	.	ID=gene-A8144_04460;Name=A8144_04460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04460
LYPH01000088.1	Protein Homology	CDS	79236	79595	.	-	0	ID=cds-OAR19677.1;Parent=gene-A8144_04460;Dbxref=NCBI_GP:OAR19677.1;Name=OAR19677.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P54133.1;locus_tag=A8144_04460;product=hypothetical protein;protein_id=OAR19677.1;transl_table=11
LYPH01000088.1	Genbank	gene	79592	79972	.	-	.	ID=gene-A8144_04465;Name=A8144_04465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04465
LYPH01000088.1	Protein Homology	CDS	79592	79972	.	-	0	ID=cds-OAR19678.1;Parent=gene-A8144_04465;Dbxref=NCBI_GP:OAR19678.1;Name=OAR19678.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P54134.1;locus_tag=A8144_04465;product=hypothetical protein;protein_id=OAR19678.1;transl_table=11
LYPH01000088.1	Genbank	gene	80827	80909	.	+	.	ID=gene-A8144_04470;Name=A8144_04470;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_04470
LYPH01000088.1	tRNAscan-SE	tRNA	80827	80909	.	+	.	ID=rna-A8144_04470;Parent=gene-A8144_04470;anticodon=(pos:80860..80862);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_04470;product=tRNA-Leu
LYPH01000088.1	tRNAscan-SE	exon	80827	80909	.	+	.	ID=exon-A8144_04470-1;Parent=rna-A8144_04470;anticodon=(pos:80860..80862);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_04470;product=tRNA-Leu
LYPH01000088.1	Genbank	gene	81219	81398	.	+	.	ID=gene-A8144_04475;Name=A8144_04475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04475
LYPH01000088.1	GeneMarkS+	CDS	81219	81398	.	+	0	ID=cds-OAR19679.1;Parent=gene-A8144_04475;Dbxref=NCBI_GP:OAR19679.1;Name=OAR19679.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04475;product=hypothetical protein;protein_id=OAR19679.1;transl_table=11
LYPH01000088.1	Genbank	pseudogene	82708	83886	.	+	.	ID=gene-A8144_04480;Name=A8144_04480;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04480;pseudo=true
LYPH01000088.1	Protein Homology	CDS	82708	83886	.	+	0	ID=cds-A8144_04480;Parent=gene-A8144_04480;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020726124.1;locus_tag=A8144_04480;product=mesaconyl-CoA isomerase;pseudo=true;transl_table=11
LYPH01000088.1	Genbank	pseudogene	83836	85070	.	+	.	ID=gene-A8144_04485;Name=A8144_04485;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04485;pseudo=true
LYPH01000088.1	Protein Homology	CDS	83836	85070	.	+	0	ID=cds-A8144_04485;Parent=gene-A8144_04485;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015306037.1;locus_tag=A8144_04485;product=acyl-CoA dehydrogenase;pseudo=true;transl_table=11
LYPH01000088.1	Genbank	gene	85238	85489	.	+	.	ID=gene-A8144_04490;Name=A8144_04490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04490
LYPH01000088.1	GeneMarkS+	CDS	85238	85489	.	+	0	ID=cds-OAR19680.1;Parent=gene-A8144_04490;Dbxref=NCBI_GP:OAR19680.1;Name=OAR19680.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04490;product=hypothetical protein;protein_id=OAR19680.1;transl_table=11
LYPH01000088.1	Genbank	gene	87051	87338	.	-	.	ID=gene-A8144_04495;Name=A8144_04495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04495
LYPH01000088.1	Protein Homology	CDS	87051	87338	.	-	0	ID=cds-OAR19681.1;Parent=gene-A8144_04495;Dbxref=NCBI_GP:OAR19681.1;Name=OAR19681.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49946.1;locus_tag=A8144_04495;product=type VII secretion protein EsxI;protein_id=OAR19681.1;transl_table=11
LYPH01000088.1	Genbank	gene	87390	87692	.	-	.	ID=gene-A8144_04500;Name=A8144_04500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04500
LYPH01000088.1	Protein Homology	CDS	87390	87692	.	-	0	ID=cds-OAR19682.1;Parent=gene-A8144_04500;Dbxref=NCBI_GP:OAR19682.1;Name=OAR19682.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49945.1;locus_tag=A8144_04500;product=ESAT-6-like protein Y;protein_id=OAR19682.1;transl_table=11
##sequence-region LYPH01000089.1 1 7265
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000089.1	Genbank	region	1	7265	.	+	.	ID=LYPH01000089.1:1..7265;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000089.1	Genbank	pseudogene	60	1193	.	-	.	ID=gene-A8144_13820;Name=A8144_13820;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13820;pseudo=true
LYPH01000089.1	Protein Homology	CDS	60	1193	.	-	0	ID=cds-A8144_13820;Parent=gene-A8144_13820;Note=incomplete%3B partial in the middle of a contig%3B missing start;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003920040.1;locus_tag=A8144_13820;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000089.1	Genbank	gene	1732	2136	.	-	.	ID=gene-A8144_13825;Name=A8144_13825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13825
LYPH01000089.1	GeneMarkS+	CDS	1732	2136	.	-	0	ID=cds-OAR19626.1;Parent=gene-A8144_13825;Dbxref=NCBI_GP:OAR19626.1;Name=OAR19626.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13825;product=hypothetical protein;protein_id=OAR19626.1;transl_table=11
LYPH01000089.1	Genbank	gene	2524	2706	.	-	.	ID=gene-A8144_13830;Name=A8144_13830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13830
LYPH01000089.1	GeneMarkS+	CDS	2524	2706	.	-	0	ID=cds-OAR19627.1;Parent=gene-A8144_13830;Dbxref=NCBI_GP:OAR19627.1;Name=OAR19627.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13830;product=hypothetical protein;protein_id=OAR19627.1;transl_table=11
LYPH01000089.1	Genbank	pseudogene	2905	3579	.	-	.	ID=gene-A8144_13835;Name=A8144_13835;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13835;pseudo=true
LYPH01000089.1	Protein Homology	CDS	2905	3579	.	-	0	ID=cds-A8144_13835;Parent=gene-A8144_13835;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020731734.1;locus_tag=A8144_13835;product=transcriptional regulator;pseudo=true;transl_table=11
LYPH01000089.1	Genbank	gene	3866	4330	.	+	.	ID=gene-A8144_13840;Name=A8144_13840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13840
LYPH01000089.1	Protein Homology	CDS	3866	4330	.	+	0	ID=cds-OAR19628.1;Parent=gene-A8144_13840;Dbxref=NCBI_GP:OAR19628.1;Name=OAR19628.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P54880.1;locus_tag=A8144_13840;product=hypothetical protein;protein_id=OAR19628.1;transl_table=11
LYPH01000089.1	Genbank	gene	4327	7206	.	+	.	ID=gene-A8144_13845;Name=A8144_13845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13845
LYPH01000089.1	Protein Homology	CDS	4327	7206	.	+	0	ID=cds-OAR19629.1;Parent=gene-A8144_13845;Dbxref=NCBI_GP:OAR19629.1;Name=OAR19629.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P54881.1;locus_tag=A8144_13845;product=hypothetical protein;protein_id=OAR19629.1;transl_table=11
##sequence-region LYPH01000090.1 1 7239
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000090.1	Genbank	region	1	7239	.	+	.	ID=LYPH01000090.1:1..7239;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000090.1	Genbank	gene	807	1028	.	+	.	ID=gene-A8144_13850;Name=A8144_13850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13850
LYPH01000090.1	GeneMarkS+	CDS	807	1028	.	+	0	ID=cds-OAR19621.1;Parent=gene-A8144_13850;Dbxref=NCBI_GP:OAR19621.1;Name=OAR19621.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13850;product=hypothetical protein;protein_id=OAR19621.1;transl_table=11
LYPH01000090.1	Genbank	gene	1078	1458	.	-	.	ID=gene-A8144_13855;Name=A8144_13855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13855
LYPH01000090.1	GeneMarkS+	CDS	1078	1458	.	-	0	ID=cds-OAR19622.1;Parent=gene-A8144_13855;Dbxref=NCBI_GP:OAR19622.1;Name=OAR19622.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13855;product=hypothetical protein;protein_id=OAR19622.1;transl_table=11
LYPH01000090.1	Genbank	pseudogene	2320	3061	.	+	.	ID=gene-A8144_13860;Name=A8144_13860;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13860;pseudo=true
LYPH01000090.1	Protein Homology	CDS	2320	3061	.	+	0	ID=cds-A8144_13860;Parent=gene-A8144_13860;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014000656.1;locus_tag=A8144_13860;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000090.1	Genbank	gene	3119	4549	.	+	.	ID=gene-A8144_13865;Name=A8144_13865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13865
LYPH01000090.1	Protein Homology	CDS	3119	4549	.	+	0	ID=cds-OAR19623.1;Parent=gene-A8144_13865;Dbxref=NCBI_GP:OAR19623.1;Name=OAR19623.1;Note=activates fatty acids by binding to coenzyme A;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908096.1;locus_tag=A8144_13865;product=acyl-CoA synthetase;protein_id=OAR19623.1;transl_table=11
LYPH01000090.1	Genbank	gene	4572	5837	.	-	.	ID=gene-A8144_13870;Name=A8144_13870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13870
LYPH01000090.1	Protein Homology	CDS	4572	5837	.	-	0	ID=cds-OAR19624.1;Parent=gene-A8144_13870;Dbxref=NCBI_GP:OAR19624.1;Name=OAR19624.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908097.1;locus_tag=A8144_13870;product=transcriptional regulator;protein_id=OAR19624.1;transl_table=11
LYPH01000090.1	Genbank	gene	6384	6683	.	+	.	ID=gene-A8144_13875;Name=A8144_13875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13875
LYPH01000090.1	Protein Homology	CDS	6384	6683	.	+	0	ID=cds-OAR19625.1;Parent=gene-A8144_13875;Dbxref=NCBI_GP:OAR19625.1;Name=OAR19625.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908098.1;locus_tag=A8144_13875;product=hypothetical protein;protein_id=OAR19625.1;transl_table=11
LYPH01000090.1	Genbank	pseudogene	6740	7239	.	+	.	ID=gene-A8144_13880;Name=A8144_13880;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13880;pseudo=true
LYPH01000090.1	Protein Homology	CDS	6740	7239	.	+	0	ID=cds-A8144_13880;Parent=gene-A8144_13880;Note=incomplete%3B too short partial abutting assembly gap%3B missing stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908184.1;locus_tag=A8144_13880;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region LYPH01000091.1 1 7103
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000091.1	Genbank	region	1	7103	.	+	.	ID=LYPH01000091.1:1..7103;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000091.1	Genbank	gene	209	466	.	+	.	ID=gene-A8144_13885;Name=A8144_13885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13885
LYPH01000091.1	GeneMarkS+	CDS	209	466	.	+	0	ID=cds-OAR19614.1;Parent=gene-A8144_13885;Dbxref=NCBI_GP:OAR19614.1;Name=OAR19614.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13885;product=hypothetical protein;protein_id=OAR19614.1;transl_table=11
LYPH01000091.1	Genbank	gene	754	1014	.	-	.	ID=gene-A8144_13890;Name=A8144_13890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13890
LYPH01000091.1	GeneMarkS+	CDS	754	1014	.	-	0	ID=cds-OAR19615.1;Parent=gene-A8144_13890;Dbxref=NCBI_GP:OAR19615.1;Name=OAR19615.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13890;product=hypothetical protein;protein_id=OAR19615.1;transl_table=11
LYPH01000091.1	Genbank	gene	1666	1869	.	-	.	ID=gene-A8144_13895;Name=A8144_13895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13895
LYPH01000091.1	GeneMarkS+	CDS	1666	1869	.	-	0	ID=cds-OAR19616.1;Parent=gene-A8144_13895;Dbxref=NCBI_GP:OAR19616.1;Name=OAR19616.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13895;product=hypothetical protein;protein_id=OAR19616.1;transl_table=11
LYPH01000091.1	Genbank	gene	2738	3046	.	+	.	ID=gene-A8144_13900;Name=A8144_13900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13900
LYPH01000091.1	GeneMarkS+	CDS	2738	3046	.	+	0	ID=cds-OAR19617.1;Parent=gene-A8144_13900;Dbxref=NCBI_GP:OAR19617.1;Name=OAR19617.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13900;product=hypothetical protein;protein_id=OAR19617.1;transl_table=11
LYPH01000091.1	Genbank	gene	3691	4044	.	-	.	ID=gene-A8144_13905;Name=A8144_13905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13905
LYPH01000091.1	GeneMarkS+	CDS	3691	4044	.	-	0	ID=cds-OAR19618.1;Parent=gene-A8144_13905;Dbxref=NCBI_GP:OAR19618.1;Name=OAR19618.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13905;product=hypothetical protein;protein_id=OAR19618.1;transl_table=11
LYPH01000091.1	Genbank	gene	4821	5069	.	-	.	ID=gene-A8144_13910;Name=A8144_13910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13910
LYPH01000091.1	GeneMarkS+	CDS	4821	5069	.	-	0	ID=cds-OAR19619.1;Parent=gene-A8144_13910;Dbxref=NCBI_GP:OAR19619.1;Name=OAR19619.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13910;product=hypothetical protein;protein_id=OAR19619.1;transl_table=11
LYPH01000091.1	Genbank	gene	5477	5659	.	-	.	ID=gene-A8144_13915;Name=A8144_13915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13915
LYPH01000091.1	GeneMarkS+	CDS	5477	5659	.	-	0	ID=cds-OAR19620.1;Parent=gene-A8144_13915;Dbxref=NCBI_GP:OAR19620.1;Name=OAR19620.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13915;product=hypothetical protein;protein_id=OAR19620.1;transl_table=11
LYPH01000091.1	Genbank	pseudogene	5970	7103	.	-	.	ID=gene-A8144_13920;Name=A8144_13920;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13920;pseudo=true
LYPH01000091.1	Protein Homology	CDS	5970	7103	.	-	0	ID=cds-A8144_13920;Parent=gene-A8144_13920;Note=incomplete%3B too short partial abutting assembly gap%3B missing start;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P54881.1;locus_tag=A8144_13920;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region LYPH01000092.1 1 6767
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000092.1	Genbank	region	1	6767	.	+	.	ID=LYPH01000092.1:1..6767;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000092.1	Genbank	gene	1	4073	.	+	.	ID=gene-A8144_13925;Name=A8144_13925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13925;partial=true;start_range=.,1
LYPH01000092.1	Protein Homology	CDS	1	4073	.	+	2	ID=cds-OAR19613.1;Parent=gene-A8144_13925;Dbxref=NCBI_GP:OAR19613.1;Name=OAR19613.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908856.1;locus_tag=A8144_13925;partial=true;product=polyketide synthase;protein_id=OAR19613.1;start_range=.,1;transl_table=11
LYPH01000092.1	Genbank	pseudogene	4074	6767	.	+	.	ID=gene-A8144_13930;Name=A8144_13930;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13930;pseudo=true
LYPH01000092.1	Protein Homology	CDS	4074	6767	.	+	0	ID=cds-A8144_13930;Parent=gene-A8144_13930;Note=incomplete%3B too short partial abutting assembly gap%3B missing stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908855.1;locus_tag=A8144_13930;product=polyketide synthase;pseudo=true;transl_table=11
##sequence-region LYPH01000093.1 1 6335
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000093.1	Genbank	region	1	6335	.	+	.	ID=LYPH01000093.1:1..6335;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000093.1	Genbank	gene	12	1121	.	+	.	ID=gene-A8144_13935;Name=A8144_13935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13935
LYPH01000093.1	Protein Homology	CDS	12	1121	.	+	0	ID=cds-OAR19610.1;Parent=gene-A8144_13935;Dbxref=NCBI_GP:OAR19610.1;Name=OAR19610.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q57240.1;locus_tag=A8144_13935;product=inositol 1-phosphate synthase;protein_id=OAR19610.1;transl_table=11
LYPH01000093.1	Genbank	pseudogene	2104	2976	.	+	.	ID=gene-A8144_13940;Name=A8144_13940;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_13940;pseudo=true
LYPH01000093.1	Protein Homology	CDS	2104	2976	.	+	0	ID=cds-A8144_13940;Parent=gene-A8144_13940;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011723318.1;locus_tag=A8144_13940;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000093.1	Genbank	gene	4114	4434	.	+	.	ID=gene-A8144_13945;Name=A8144_13945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13945
LYPH01000093.1	GeneMarkS+	CDS	4114	4434	.	+	0	ID=cds-OAR19611.1;Parent=gene-A8144_13945;Dbxref=NCBI_GP:OAR19611.1;Name=OAR19611.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13945;product=hypothetical protein;protein_id=OAR19611.1;transl_table=11
LYPH01000093.1	Genbank	gene	5601	6104	.	+	.	ID=gene-A8144_13950;Name=A8144_13950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13950
LYPH01000093.1	Protein Homology	CDS	5601	6104	.	+	0	ID=cds-OAR19612.1;Parent=gene-A8144_13950;Dbxref=NCBI_GP:OAR19612.1;Name=OAR19612.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007771688.1;locus_tag=A8144_13950;product=MarR family transcriptional regulator;protein_id=OAR19612.1;transl_table=11
##sequence-region LYPH01000094.1 1 5440
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000094.1	Genbank	region	1	5440	.	+	.	ID=LYPH01000094.1:1..5440;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000094.1	Genbank	gene	440	1288	.	-	.	ID=gene-A8144_13955;Name=A8144_13955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13955
LYPH01000094.1	Protein Homology	CDS	440	1288	.	-	0	ID=cds-OAR19604.1;Parent=gene-A8144_13955;Dbxref=NCBI_GP:OAR19604.1;Name=OAR19604.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O69470.3;locus_tag=A8144_13955;product=DNA-formamidopyrimidine glycosylase;protein_id=OAR19604.1;transl_table=11
LYPH01000094.1	Genbank	gene	1343	2059	.	-	.	ID=gene-A8144_13960;Name=A8144_13960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13960
LYPH01000094.1	Protein Homology	CDS	1343	2059	.	-	0	ID=cds-OAR19608.1;Parent=gene-A8144_13960;Dbxref=NCBI_GP:OAR19608.1;Name=OAR19608.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O69469.1;locus_tag=A8144_13960;product=ribonuclease III;protein_id=OAR19608.1;transl_table=11
LYPH01000094.1	Genbank	gene	2056	2709	.	-	.	ID=gene-A8144_13965;Name=A8144_13965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13965
LYPH01000094.1	Protein Homology	CDS	2056	2709	.	-	0	ID=cds-OAR19605.1;Parent=gene-A8144_13965;Dbxref=NCBI_GP:OAR19605.1;Name=OAR19605.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O69468.1;locus_tag=A8144_13965;product=hypothetical protein;protein_id=OAR19605.1;transl_table=11
LYPH01000094.1	Genbank	gene	2743	3480	.	-	.	ID=gene-A8144_13970;Name=A8144_13970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13970
LYPH01000094.1	Protein Homology	CDS	2743	3480	.	-	0	ID=cds-OAR19609.1;Parent=gene-A8144_13970;Dbxref=NCBI_GP:OAR19609.1;Name=OAR19609.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003922083.1;locus_tag=A8144_13970;product=hypothetical protein;protein_id=OAR19609.1;transl_table=11
LYPH01000094.1	Genbank	gene	3871	4071	.	+	.	ID=gene-A8144_13975;Name=A8144_13975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13975
LYPH01000094.1	GeneMarkS+	CDS	3871	4071	.	+	0	ID=cds-OAR19606.1;Parent=gene-A8144_13975;Dbxref=NCBI_GP:OAR19606.1;Name=OAR19606.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13975;product=hypothetical protein;protein_id=OAR19606.1;transl_table=11
LYPH01000094.1	Genbank	gene	4789	5037	.	+	.	ID=gene-A8144_13980;Name=A8144_13980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13980
LYPH01000094.1	GeneMarkS+	CDS	4789	5037	.	+	0	ID=cds-OAR19607.1;Parent=gene-A8144_13980;Dbxref=NCBI_GP:OAR19607.1;Name=OAR19607.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13980;product=hypothetical protein;protein_id=OAR19607.1;transl_table=11
##sequence-region LYPH01000095.1 1 5017
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000095.1	Genbank	region	1	5017	.	+	.	ID=LYPH01000095.1:1..5017;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000095.1	Genbank	gene	443	814	.	+	.	ID=gene-A8144_13985;Name=A8144_13985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13985
LYPH01000095.1	GeneMarkS+	CDS	443	814	.	+	0	ID=cds-OAR19599.1;Parent=gene-A8144_13985;Dbxref=NCBI_GP:OAR19599.1;Name=OAR19599.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13985;product=hypothetical protein;protein_id=OAR19599.1;transl_table=11
LYPH01000095.1	Genbank	gene	930	1109	.	-	.	ID=gene-A8144_13990;Name=A8144_13990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13990
LYPH01000095.1	GeneMarkS+	CDS	930	1109	.	-	0	ID=cds-OAR19600.1;Parent=gene-A8144_13990;Dbxref=NCBI_GP:OAR19600.1;Name=OAR19600.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13990;product=hypothetical protein;protein_id=OAR19600.1;transl_table=11
LYPH01000095.1	Genbank	gene	1252	1470	.	-	.	ID=gene-A8144_13995;Name=A8144_13995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_13995
LYPH01000095.1	GeneMarkS+	CDS	1252	1470	.	-	0	ID=cds-OAR19601.1;Parent=gene-A8144_13995;Dbxref=NCBI_GP:OAR19601.1;Name=OAR19601.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_13995;product=hypothetical protein;protein_id=OAR19601.1;transl_table=11
LYPH01000095.1	Genbank	gene	1582	2112	.	-	.	ID=gene-A8144_14000;Name=A8144_14000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14000
LYPH01000095.1	Protein Homology	CDS	1582	2112	.	-	0	ID=cds-OAR19602.1;Parent=gene-A8144_14000;Dbxref=NCBI_GP:OAR19602.1;Name=OAR19602.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908247.1;locus_tag=A8144_14000;product=hypothetical protein;protein_id=OAR19602.1;transl_table=11
LYPH01000095.1	Genbank	gene	2144	3490	.	-	.	ID=gene-A8144_14005;Name=A8144_14005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14005
LYPH01000095.1	Protein Homology	CDS	2144	3490	.	-	0	ID=cds-OAR19603.1;Parent=gene-A8144_14005;Dbxref=NCBI_GP:OAR19603.1;Name=OAR19603.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014382428.1;locus_tag=A8144_14005;product=hypothetical protein;protein_id=OAR19603.1;transl_table=11
LYPH01000095.1	Genbank	gene	3660	3745	.	+	.	ID=gene-A8144_14010;Name=A8144_14010;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_14010
LYPH01000095.1	tRNAscan-SE	tRNA	3660	3745	.	+	.	ID=rna-A8144_14010;Parent=gene-A8144_14010;anticodon=(pos:3693..3695);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_14010;product=tRNA-Leu
LYPH01000095.1	tRNAscan-SE	exon	3660	3745	.	+	.	ID=exon-A8144_14010-1;Parent=rna-A8144_14010;anticodon=(pos:3693..3695);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_14010;product=tRNA-Leu
##sequence-region LYPH01000096.1 1 4201
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000096.1	Genbank	region	1	4201	.	+	.	ID=LYPH01000096.1:1..4201;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000096.1	Genbank	pseudogene	173	1605	.	+	.	ID=gene-A8144_14015;Name=A8144_14015;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_14015;pseudo=true
LYPH01000096.1	Protein Homology	CDS	173	1605	.	+	0	ID=cds-A8144_14015;Parent=gene-A8144_14015;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_013472536.1;locus_tag=A8144_14015;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000096.1	Genbank	gene	2358	2831	.	+	.	ID=gene-A8144_14020;Name=A8144_14020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14020
LYPH01000096.1	GeneMarkS+	CDS	2358	2831	.	+	0	ID=cds-OAR19597.1;Parent=gene-A8144_14020;Dbxref=NCBI_GP:OAR19597.1;Name=OAR19597.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_14020;product=hypothetical protein;protein_id=OAR19597.1;transl_table=11
LYPH01000096.1	Genbank	gene	3626	3979	.	+	.	ID=gene-A8144_14025;Name=A8144_14025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14025
LYPH01000096.1	Protein Homology	CDS	3626	3979	.	+	0	ID=cds-OAR19598.1;Parent=gene-A8144_14025;Dbxref=NCBI_GP:OAR19598.1;Name=OAR19598.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908559.1;locus_tag=A8144_14025;product=hypothetical protein;protein_id=OAR19598.1;transl_table=11
##sequence-region LYPH01000097.1 1 3831
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000097.1	Genbank	region	1	3831	.	+	.	ID=LYPH01000097.1:1..3831;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000097.1	Genbank	pseudogene	1	440	.	-	.	ID=gene-A8144_14030;Name=A8144_14030;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_14030;pseudo=true
LYPH01000097.1	Protein Homology	CDS	1	440	.	-	0	ID=cds-A8144_14030;Parent=gene-A8144_14030;Note=incomplete%3B too short partial abutting assembly gap%3B missing stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P95134.1;locus_tag=A8144_14030;product=glycosyl transferase family 1;pseudo=true;transl_table=11
LYPH01000097.1	Genbank	gene	723	1412	.	-	.	ID=gene-A8144_14035;Name=A8144_14035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14035
LYPH01000097.1	Protein Homology	CDS	723	1412	.	-	0	ID=cds-OAR19595.1;Parent=gene-A8144_14035;Dbxref=NCBI_GP:OAR19595.1;Name=OAR19595.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CD89.1;locus_tag=A8144_14035;product=rhamnosyl O-methyltransferase;protein_id=OAR19595.1;transl_table=11
LYPH01000097.1	Genbank	gene	1668	2489	.	-	.	ID=gene-A8144_14040;Name=A8144_14040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14040
LYPH01000097.1	Protein Homology	CDS	1668	2489	.	-	0	ID=cds-OAR19596.1;Parent=gene-A8144_14040;Dbxref=NCBI_GP:OAR19596.1;Name=OAR19596.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907545.1;locus_tag=A8144_14040;product=biotin carboxyl carrier protein;protein_id=OAR19596.1;transl_table=11
LYPH01000097.1	Genbank	pseudogene	3160	3831	.	-	.	ID=gene-A8144_14045;Name=A8144_14045;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_14045;pseudo=true
LYPH01000097.1	Protein Homology	CDS	3160	3831	.	-	0	ID=cds-A8144_14045;Parent=gene-A8144_14045;Note=incomplete%3B too short partial abutting assembly gap%3B missing start;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907544.1;locus_tag=A8144_14045;product=glycosyl transferase family 1;pseudo=true;transl_table=11
##sequence-region LYPH01000098.1 1 3522
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000098.1	Genbank	region	1	3522	.	+	.	ID=LYPH01000098.1:1..3522;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000098.1	Genbank	gene	404	652	.	-	.	ID=gene-A8144_14050;Name=A8144_14050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14050
LYPH01000098.1	GeneMarkS+	CDS	404	652	.	-	0	ID=cds-OAR19592.1;Parent=gene-A8144_14050;Dbxref=NCBI_GP:OAR19592.1;Name=OAR19592.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_14050;product=hypothetical protein;protein_id=OAR19592.1;transl_table=11
LYPH01000098.1	Genbank	gene	1694	1939	.	-	.	ID=gene-A8144_14055;Name=A8144_14055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14055
LYPH01000098.1	GeneMarkS+	CDS	1694	1939	.	-	0	ID=cds-OAR19593.1;Parent=gene-A8144_14055;Dbxref=NCBI_GP:OAR19593.1;Name=OAR19593.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_14055;product=hypothetical protein;protein_id=OAR19593.1;transl_table=11
LYPH01000098.1	Genbank	gene	2867	3343	.	+	.	ID=gene-A8144_14060;Name=A8144_14060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14060
LYPH01000098.1	Protein Homology	CDS	2867	3343	.	+	0	ID=cds-OAR19594.1;Parent=gene-A8144_14060;Dbxref=NCBI_GP:OAR19594.1;Name=OAR19594.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907726.1;locus_tag=A8144_14060;product=hypothetical protein;protein_id=OAR19594.1;transl_table=11
##sequence-region LYPH01000099.1 1 79570
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000099.1	Genbank	region	1	79570	.	+	.	ID=LYPH01000099.1:1..79570;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000099.1	Genbank	gene	93	3011	.	-	.	ID=gene-A8144_04505;Name=A8144_04505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04505
LYPH01000099.1	Protein Homology	CDS	93	3011	.	-	0	ID=cds-OAR19584.1;Parent=gene-A8144_04505;Dbxref=NCBI_GP:OAR19584.1;Name=OAR19584.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q50192.2;locus_tag=A8144_04505;product=leucine--tRNA ligase;protein_id=OAR19584.1;transl_table=11
LYPH01000099.1	Genbank	gene	3209	4045	.	+	.	ID=gene-A8144_04510;Name=A8144_04510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04510
LYPH01000099.1	Protein Homology	CDS	3209	4045	.	+	0	ID=cds-OAR19535.1;Parent=gene-A8144_04510;Dbxref=NCBI_GP:OAR19535.1;Name=OAR19535.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O33075.1;locus_tag=A8144_04510;product=hypothetical protein;protein_id=OAR19535.1;transl_table=11
LYPH01000099.1	Genbank	gene	4241	4582	.	+	.	ID=gene-A8144_04515;Name=A8144_04515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04515
LYPH01000099.1	Protein Homology	CDS	4241	4582	.	+	0	ID=cds-OAR19536.1;Parent=gene-A8144_04515;Dbxref=NCBI_GP:OAR19536.1;Name=OAR19536.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O32871.1;locus_tag=A8144_04515;product=hypothetical protein;protein_id=OAR19536.1;transl_table=11
LYPH01000099.1	Genbank	gene	4694	5299	.	+	.	ID=gene-A8144_04520;Name=A8144_04520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04520
LYPH01000099.1	Protein Homology	CDS	4694	5299	.	+	0	ID=cds-OAR19537.1;Parent=gene-A8144_04520;Dbxref=NCBI_GP:OAR19537.1;Name=OAR19537.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907478.1;locus_tag=A8144_04520;product=hypothetical protein;protein_id=OAR19537.1;transl_table=11
LYPH01000099.1	Genbank	gene	5627	6232	.	-	.	ID=gene-A8144_04525;Name=A8144_04525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04525
LYPH01000099.1	Protein Homology	CDS	5627	6232	.	-	0	ID=cds-OAR19585.1;Parent=gene-A8144_04525;Dbxref=NCBI_GP:OAR19585.1;Name=OAR19585.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907477.1;locus_tag=A8144_04525;product=hypothetical protein;protein_id=OAR19585.1;transl_table=11
LYPH01000099.1	Genbank	gene	6590	6790	.	+	.	ID=gene-A8144_04530;Name=A8144_04530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04530
LYPH01000099.1	GeneMarkS+	CDS	6590	6790	.	+	0	ID=cds-OAR19538.1;Parent=gene-A8144_04530;Dbxref=NCBI_GP:OAR19538.1;Name=OAR19538.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04530;product=hypothetical protein;protein_id=OAR19538.1;transl_table=11
LYPH01000099.1	Genbank	gene	7437	7736	.	-	.	ID=gene-A8144_04535;Name=A8144_04535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04535
LYPH01000099.1	GeneMarkS+	CDS	7437	7736	.	-	0	ID=cds-OAR19539.1;Parent=gene-A8144_04535;Dbxref=NCBI_GP:OAR19539.1;Name=OAR19539.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04535;product=hypothetical protein;protein_id=OAR19539.1;transl_table=11
LYPH01000099.1	Genbank	gene	8749	9039	.	+	.	ID=gene-A8144_04540;Name=A8144_04540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04540
LYPH01000099.1	Protein Homology	CDS	8749	9039	.	+	0	ID=cds-OAR19540.1;Parent=gene-A8144_04540;Dbxref=NCBI_GP:OAR19540.1;Name=OAR19540.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907476.1;locus_tag=A8144_04540;product=hypothetical protein;protein_id=OAR19540.1;transl_table=11
LYPH01000099.1	Genbank	gene	9306	9557	.	-	.	ID=gene-A8144_04545;Name=A8144_04545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04545
LYPH01000099.1	Protein Homology	CDS	9306	9557	.	-	0	ID=cds-OAR19541.1;Parent=gene-A8144_04545;Dbxref=NCBI_GP:OAR19541.1;Name=OAR19541.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907475.1;locus_tag=A8144_04545;product=hypothetical protein;protein_id=OAR19541.1;transl_table=11
LYPH01000099.1	Genbank	gene	10360	10442	.	-	.	ID=gene-A8144_04550;Name=A8144_04550;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_04550
LYPH01000099.1	tRNAscan-SE	tRNA	10360	10442	.	-	.	ID=rna-A8144_04550;Parent=gene-A8144_04550;anticodon=(pos:complement(10407..10409));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_04550;product=tRNA-Leu
LYPH01000099.1	tRNAscan-SE	exon	10360	10442	.	-	.	ID=exon-A8144_04550-1;Parent=rna-A8144_04550;anticodon=(pos:complement(10407..10409));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_04550;product=tRNA-Leu
LYPH01000099.1	Genbank	gene	10693	12159	.	+	.	ID=gene-A8144_04555;Name=A8144_04555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04555
LYPH01000099.1	Protein Homology	CDS	10693	12159	.	+	0	ID=cds-OAR19542.1;Parent=gene-A8144_04555;Dbxref=NCBI_GP:OAR19542.1;Name=OAR19542.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907473.1;locus_tag=A8144_04555;product=hypothetical protein;protein_id=OAR19542.1;transl_table=11
LYPH01000099.1	Genbank	gene	12281	12748	.	+	.	ID=gene-A8144_04560;Name=A8144_04560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04560
LYPH01000099.1	Protein Homology	CDS	12281	12748	.	+	0	ID=cds-OAR19543.1;Parent=gene-A8144_04560;Dbxref=NCBI_GP:OAR19543.1;Name=OAR19543.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003883293.1;locus_tag=A8144_04560;product=hypothetical protein;protein_id=OAR19543.1;transl_table=11
LYPH01000099.1	Genbank	gene	12745	14274	.	+	.	ID=gene-A8144_04565;Name=A8144_04565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04565
LYPH01000099.1	Protein Homology	CDS	12745	14274	.	+	0	ID=cds-OAR19544.1;Parent=gene-A8144_04565;Dbxref=NCBI_GP:OAR19544.1;Name=OAR19544.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907471.1;locus_tag=A8144_04565;product=serine/threonine protein phosphatase;protein_id=OAR19544.1;transl_table=11
LYPH01000099.1	Genbank	gene	14271	15668	.	+	.	ID=gene-A8144_04570;Name=A8144_04570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04570
LYPH01000099.1	Protein Homology	CDS	14271	15668	.	+	0	ID=cds-OAR19545.1;Parent=gene-A8144_04570;Dbxref=NCBI_GP:OAR19545.1;Name=OAR19545.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003872104.1;locus_tag=A8144_04570;product=cell division protein FtsW;protein_id=OAR19545.1;transl_table=11
LYPH01000099.1	Genbank	gene	15665	17143	.	+	.	ID=gene-A8144_04575;Name=A8144_04575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04575
LYPH01000099.1	Protein Homology	CDS	15665	17143	.	+	0	ID=cds-OAR19546.1;Parent=gene-A8144_04575;Dbxref=NCBI_GP:OAR19546.1;Name=OAR19546.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_018602957.1;locus_tag=A8144_04575;product=penicillin-binding protein;protein_id=OAR19546.1;transl_table=11
LYPH01000099.1	Genbank	gene	17140	18453	.	+	.	ID=gene-A8144_04580;Name=A8144_04580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04580
LYPH01000099.1	Protein Homology	CDS	17140	18453	.	+	0	ID=cds-OAR19547.1;Parent=gene-A8144_04580;Dbxref=NCBI_GP:OAR19547.1;Name=OAR19547.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P54743.3;locus_tag=A8144_04580;product=serine/threonine protein kinase;protein_id=OAR19547.1;transl_table=11
LYPH01000099.1	Genbank	gene	18463	20331	.	+	.	ID=gene-A8144_04585;Name=A8144_04585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04585
LYPH01000099.1	Protein Homology	CDS	18463	20331	.	+	0	ID=cds-OAR19548.1;Parent=gene-A8144_04585;Dbxref=NCBI_GP:OAR19548.1;Name=OAR19548.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_020731191.1;locus_tag=A8144_04585;product=serine/threonine protein kinase;protein_id=OAR19548.1;transl_table=11
LYPH01000099.1	Genbank	gene	20309	21007	.	-	.	ID=gene-A8144_04590;Name=A8144_04590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04590
LYPH01000099.1	Protein Homology	CDS	20309	21007	.	-	0	ID=cds-OAR19549.1;Parent=gene-A8144_04590;Dbxref=NCBI_GP:OAR19549.1;Name=OAR19549.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907466.1;locus_tag=A8144_04590;product=anthranilate synthase component II;protein_id=OAR19549.1;transl_table=11
LYPH01000099.1	Genbank	pseudogene	21046	21810	.	-	.	ID=gene-A8144_04595;Name=A8144_04595;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04595;pseudo=true
LYPH01000099.1	Protein Homology	CDS	21046	21810	.	-	0	ID=cds-A8144_04595;Parent=gene-A8144_04595;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012392021.1;locus_tag=A8144_04595;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000099.1	Genbank	gene	21917	22198	.	+	.	ID=gene-A8144_04600;Name=A8144_04600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04600
LYPH01000099.1	Protein Homology	CDS	21917	22198	.	+	0	ID=cds-OAR19586.1;Parent=gene-A8144_04600;Dbxref=NCBI_GP:OAR19586.1;Name=OAR19586.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003905205.1;locus_tag=A8144_04600;product=cell division protein CrgA;protein_id=OAR19586.1;transl_table=11
LYPH01000099.1	Genbank	gene	22353	22766	.	+	.	ID=gene-A8144_04605;Name=A8144_04605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04605
LYPH01000099.1	Protein Homology	CDS	22353	22766	.	+	0	ID=cds-OAR19550.1;Parent=gene-A8144_04605;Dbxref=NCBI_GP:OAR19550.1;Name=OAR19550.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907464.1;locus_tag=A8144_04605;product=hypothetical protein;protein_id=OAR19550.1;transl_table=11
LYPH01000099.1	Genbank	gene	22791	23339	.	-	.	ID=gene-A8144_04610;Name=A8144_04610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04610
LYPH01000099.1	Protein Homology	CDS	22791	23339	.	-	0	ID=cds-OAR19551.1;Parent=gene-A8144_04610;Dbxref=NCBI_GP:OAR19551.1;Name=OAR19551.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_015353888.1;locus_tag=A8144_04610;product=peptidylprolyl isomerase;protein_id=OAR19551.1;transl_table=11
LYPH01000099.1	Genbank	gene	25366	25557	.	-	.	ID=gene-A8144_04615;Name=A8144_04615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04615
LYPH01000099.1	Protein Homology	CDS	25366	25557	.	-	0	ID=cds-OAR19552.1;Parent=gene-A8144_04615;Dbxref=NCBI_GP:OAR19552.1;Name=OAR19552.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907462.1;locus_tag=A8144_04615;product=hypothetical protein;protein_id=OAR19552.1;transl_table=11
LYPH01000099.1	Genbank	gene	26102	26476	.	+	.	ID=gene-A8144_04620;Name=A8144_04620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04620
LYPH01000099.1	Protein Homology	CDS	26102	26476	.	+	0	ID=cds-OAR19553.1;Parent=gene-A8144_04620;Dbxref=NCBI_GP:OAR19553.1;Name=OAR19553.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907461.1;locus_tag=A8144_04620;product=hypothetical protein;protein_id=OAR19553.1;transl_table=11
LYPH01000099.1	Genbank	gene	26866	26941	.	-	.	ID=gene-A8144_04625;Name=A8144_04625;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_04625
LYPH01000099.1	tRNAscan-SE	tRNA	26866	26941	.	-	.	ID=rna-A8144_04625;Parent=gene-A8144_04625;anticodon=(pos:complement(26906..26908));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_04625;product=tRNA-Ala
LYPH01000099.1	tRNAscan-SE	exon	26866	26941	.	-	.	ID=exon-A8144_04625-1;Parent=rna-A8144_04625;anticodon=(pos:complement(26906..26908));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_04625;product=tRNA-Ala
LYPH01000099.1	Genbank	gene	27075	27151	.	-	.	ID=gene-A8144_04630;Name=A8144_04630;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_04630
LYPH01000099.1	tRNAscan-SE	tRNA	27075	27151	.	-	.	ID=rna-A8144_04630;Parent=gene-A8144_04630;anticodon=(pos:complement(27115..27117));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_04630;product=tRNA-Ile
LYPH01000099.1	tRNAscan-SE	exon	27075	27151	.	-	.	ID=exon-A8144_04630-1;Parent=rna-A8144_04630;anticodon=(pos:complement(27115..27117));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_04630;product=tRNA-Ile
LYPH01000099.1	Genbank	gene	27239	28032	.	-	.	ID=gene-A8144_04635;Name=A8144_04635;end_range=28032,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04635;partial=true
LYPH01000099.1	Protein Homology	CDS	27239	28032	.	-	2	ID=cds-OAR19554.1;Parent=gene-A8144_04635;Dbxref=NCBI_GP:OAR19554.1;Name=OAR19554.1;end_range=28032,.;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O32870.1;locus_tag=A8144_04635;partial=true;product=hypothetical protein;protein_id=OAR19554.1;transl_table=11
LYPH01000099.1	Genbank	gene	28267	32016	.	-	.	ID=gene-A8144_04640;Name=A8144_04640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04640
LYPH01000099.1	Protein Homology	CDS	28267	32016	.	-	0	ID=cds-OAR19555.1;Parent=gene-A8144_04640;Dbxref=NCBI_GP:OAR19555.1;Name=OAR19555.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_012634405.1;locus_tag=A8144_04640;product=DNA gyrase subunit A;protein_id=OAR19555.1;transl_table=11
LYPH01000099.1	Genbank	gene	32069	34105	.	-	.	ID=gene-A8144_04645;Name=A8144_04645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04645
LYPH01000099.1	Protein Homology	CDS	32069	34105	.	-	0	ID=cds-OAR19587.1;Parent=gene-A8144_04645;Dbxref=NCBI_GP:OAR19587.1;Name=OAR19587.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011777331.1;locus_tag=A8144_04645;product=DNA gyrase subunit B;protein_id=OAR19587.1;transl_table=11
LYPH01000099.1	Genbank	gene	34330	34899	.	-	.	ID=gene-A8144_04650;Name=A8144_04650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04650
LYPH01000099.1	Protein Homology	CDS	34330	34899	.	-	0	ID=cds-OAR19556.1;Parent=gene-A8144_04650;Dbxref=NCBI_GP:OAR19556.1;Name=OAR19556.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CDF4.1;locus_tag=A8144_04650;product=hypothetical protein;protein_id=OAR19556.1;transl_table=11
LYPH01000099.1	Genbank	gene	34896	36053	.	-	.	ID=gene-A8144_04655;Name=A8144_04655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04655
LYPH01000099.1	Protein Homology	CDS	34896	36053	.	-	0	ID=cds-OAR19557.1;Parent=gene-A8144_04655;Dbxref=NCBI_GP:OAR19557.1;Name=OAR19557.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46391.3;locus_tag=A8144_04655;product=DNA replication/repair protein RecF;protein_id=OAR19557.1;transl_table=11
LYPH01000099.1	Genbank	gene	36054	37253	.	-	.	ID=gene-A8144_04660;Name=A8144_04660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04660
LYPH01000099.1	Protein Homology	CDS	36054	37253	.	-	0	ID=cds-OAR19558.1;Parent=gene-A8144_04660;Dbxref=NCBI_GP:OAR19558.1;Name=OAR19558.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014210245.1;locus_tag=A8144_04660;product=DNA polymerase III subunit beta;protein_id=OAR19558.1;transl_table=11
LYPH01000099.1	Genbank	gene	37768	39276	.	-	.	ID=gene-A8144_04665;Name=A8144_04665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04665
LYPH01000099.1	Protein Homology	CDS	37768	39276	.	-	0	ID=cds-OAR19588.1;Parent=gene-A8144_04665;Dbxref=NCBI_GP:OAR19588.1;Name=OAR19588.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007769784.1;locus_tag=A8144_04665;product=chromosomal replication initiation protein DnaA;protein_id=OAR19588.1;transl_table=11
LYPH01000099.1	Genbank	gene	39884	40027	.	+	.	ID=gene-A8144_04670;Name=A8144_04670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04670
LYPH01000099.1	Protein Homology	CDS	39884	40027	.	+	0	ID=cds-OAR19589.1;Parent=gene-A8144_04670;Dbxref=NCBI_GP:OAR19589.1;Name=OAR19589.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003890928.1;locus_tag=A8144_04670;product=50S ribosomal protein L34;protein_id=OAR19589.1;transl_table=11
LYPH01000099.1	Genbank	gene	40049	40411	.	+	.	ID=gene-A8144_04675;Name=A8144_04675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04675
LYPH01000099.1	Protein Homology	CDS	40049	40411	.	+	0	ID=cds-OAR19559.1;Parent=gene-A8144_04675;Dbxref=NCBI_GP:OAR19559.1;Name=OAR19559.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46610.1;locus_tag=A8144_04675;product=ribonuclease P protein component;protein_id=OAR19559.1;transl_table=11
LYPH01000099.1	Genbank	gene	40750	41892	.	+	.	ID=gene-A8144_04680;Name=A8144_04680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04680
LYPH01000099.1	Protein Homology	CDS	40750	41892	.	+	0	ID=cds-OAR19560.1;Parent=gene-A8144_04680;Dbxref=NCBI_GP:OAR19560.1;Name=OAR19560.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q50205.2;locus_tag=A8144_04680;product=membrane protein insertase YidC;protein_id=OAR19560.1;transl_table=11
LYPH01000099.1	Genbank	gene	41974	42555	.	+	.	ID=gene-A8144_04685;Name=A8144_04685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04685
LYPH01000099.1	Protein Homology	CDS	41974	42555	.	+	0	ID=cds-OAR19561.1;Parent=gene-A8144_04685;Dbxref=NCBI_GP:OAR19561.1;Name=OAR19561.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_008262485.1;locus_tag=A8144_04685;product=single-stranded DNA-binding protein;protein_id=OAR19561.1;transl_table=11
LYPH01000099.1	Genbank	gene	42627	43373	.	+	.	ID=gene-A8144_04690;Name=A8144_04690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04690
LYPH01000099.1	Protein Homology	CDS	42627	43373	.	+	0	ID=cds-OAR19562.1;Parent=gene-A8144_04690;Dbxref=NCBI_GP:OAR19562.1;Name=OAR19562.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:B8ZTN3.1;locus_tag=A8144_04690;product=16S rRNA (guanine(527)-N(7))-methyltransferase;protein_id=OAR19562.1;transl_table=11
LYPH01000099.1	Genbank	gene	43589	44425	.	+	.	ID=gene-A8144_04695;Name=A8144_04695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04695
LYPH01000099.1	Protein Homology	CDS	43589	44425	.	+	0	ID=cds-OAR19590.1;Parent=gene-A8144_04695;Dbxref=NCBI_GP:OAR19590.1;Name=OAR19590.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003912400.1;locus_tag=A8144_04695;product=chromosome partitioning protein ParA;protein_id=OAR19590.1;transl_table=11
LYPH01000099.1	Genbank	gene	44428	45429	.	+	.	ID=gene-A8144_04700;Name=A8144_04700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04700
LYPH01000099.1	Protein Homology	CDS	44428	45429	.	+	0	ID=cds-OAR19563.1;Parent=gene-A8144_04700;Dbxref=NCBI_GP:OAR19563.1;Name=OAR19563.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q50201.1;locus_tag=A8144_04700;product=chromosome partitioning protein ParB;protein_id=OAR19563.1;transl_table=11
LYPH01000099.1	Genbank	gene	45782	46561	.	+	.	ID=gene-A8144_04705;Name=A8144_04705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04705
LYPH01000099.1	Protein Homology	CDS	45782	46561	.	+	0	ID=cds-OAR19564.1;Parent=gene-A8144_04705;Dbxref=NCBI_GP:OAR19564.1;Name=OAR19564.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010909044.1;locus_tag=A8144_04705;product=acetyltransferase;protein_id=OAR19564.1;transl_table=11
LYPH01000099.1	Genbank	gene	46558	47778	.	-	.	ID=gene-A8144_04710;Name=A8144_04710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04710
LYPH01000099.1	Protein Homology	CDS	46558	47778	.	-	0	ID=cds-OAR19565.1;Parent=gene-A8144_04710;Dbxref=NCBI_GP:OAR19565.1;Name=OAR19565.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003400168.1;locus_tag=A8144_04710;product=N-acetylmuramoyl-L-alanine amidase;protein_id=OAR19565.1;transl_table=11
LYPH01000099.1	Genbank	gene	47911	49287	.	-	.	ID=gene-A8144_04715;Name=A8144_04715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04715
LYPH01000099.1	Protein Homology	CDS	47911	49287	.	-	0	ID=cds-OAR19566.1;Parent=gene-A8144_04715;Dbxref=NCBI_GP:OAR19566.1;Name=OAR19566.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:P46843.1;locus_tag=A8144_04715;product=thioredoxin;protein_id=OAR19566.1;transl_table=11
LYPH01000099.1	Genbank	gene	49607	49798	.	+	.	ID=gene-A8144_04720;Name=A8144_04720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04720
LYPH01000099.1	GeneMarkS+	CDS	49607	49798	.	+	0	ID=cds-OAR19567.1;Parent=gene-A8144_04720;Dbxref=NCBI_GP:OAR19567.1;Name=OAR19567.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04720;product=hypothetical protein;protein_id=OAR19567.1;transl_table=11
LYPH01000099.1	Genbank	gene	50860	54480	.	-	.	ID=gene-A8144_04725;Name=A8144_04725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04725
LYPH01000099.1	Protein Homology	CDS	50860	54480	.	-	0	ID=cds-OAR19568.1;Parent=gene-A8144_04725;Dbxref=NCBI_GP:OAR19568.1;Name=OAR19568.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010909041.1;locus_tag=A8144_04725;product=murein biosynthesis integral membrane protein MurJ;protein_id=OAR19568.1;transl_table=11
LYPH01000099.1	Genbank	gene	54477	56870	.	-	.	ID=gene-A8144_04730;Name=A8144_04730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04730
LYPH01000099.1	Protein Homology	CDS	54477	56870	.	-	0	ID=cds-OAR19569.1;Parent=gene-A8144_04730;Dbxref=NCBI_GP:OAR19569.1;Name=OAR19569.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010909040.1;locus_tag=A8144_04730;product=hypothetical protein;protein_id=OAR19569.1;transl_table=11
LYPH01000099.1	Genbank	gene	56867	57622	.	-	.	ID=gene-A8144_04735;Name=A8144_04735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04735
LYPH01000099.1	Protein Homology	CDS	56867	57622	.	-	0	ID=cds-OAR19570.1;Parent=gene-A8144_04735;Dbxref=NCBI_GP:OAR19570.1;Name=OAR19570.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010909039.1;locus_tag=A8144_04735;product=DNA mismatch repair protein MutT;protein_id=OAR19570.1;transl_table=11
LYPH01000099.1	Genbank	gene	57815	59269	.	+	.	ID=gene-A8144_04740;Name=A8144_04740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04740
LYPH01000099.1	Protein Homology	CDS	57815	59269	.	+	0	ID=cds-OAR19571.1;Parent=gene-A8144_04740;Dbxref=NCBI_GP:OAR19571.1;Name=OAR19571.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003400120.1;locus_tag=A8144_04740;product=CCA tRNA nucleotidyltransferase;protein_id=OAR19571.1;transl_table=11
LYPH01000099.1	Genbank	gene	59658	59957	.	+	.	ID=gene-A8144_04745;Name=A8144_04745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04745
LYPH01000099.1	GeneMarkS+	CDS	59658	59957	.	+	0	ID=cds-OAR19572.1;Parent=gene-A8144_04745;Dbxref=NCBI_GP:OAR19572.1;Name=OAR19572.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04745;product=hypothetical protein;protein_id=OAR19572.1;transl_table=11
LYPH01000099.1	Genbank	gene	60111	60434	.	+	.	ID=gene-A8144_04750;Name=A8144_04750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04750
LYPH01000099.1	GeneMarkS+	CDS	60111	60434	.	+	0	ID=cds-OAR19573.1;Parent=gene-A8144_04750;Dbxref=NCBI_GP:OAR19573.1;Name=OAR19573.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04750;product=hypothetical protein;protein_id=OAR19573.1;transl_table=11
LYPH01000099.1	Genbank	gene	60424	60642	.	+	.	ID=gene-A8144_04755;Name=A8144_04755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04755
LYPH01000099.1	GeneMarkS+	CDS	60424	60642	.	+	0	ID=cds-OAR19574.1;Parent=gene-A8144_04755;Dbxref=NCBI_GP:OAR19574.1;Name=OAR19574.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04755;product=hypothetical protein;protein_id=OAR19574.1;transl_table=11
LYPH01000099.1	Genbank	gene	60710	60785	.	+	.	ID=gene-A8144_04760;Name=A8144_04760;gbkey=Gene;gene_biotype=tRNA;locus_tag=A8144_04760
LYPH01000099.1	tRNAscan-SE	tRNA	60710	60785	.	+	.	ID=rna-A8144_04760;Parent=gene-A8144_04760;anticodon=(pos:60743..60745);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_04760;product=tRNA-Ala
LYPH01000099.1	tRNAscan-SE	exon	60710	60785	.	+	.	ID=exon-A8144_04760-1;Parent=rna-A8144_04760;anticodon=(pos:60743..60745);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:1.23;locus_tag=A8144_04760;product=tRNA-Ala
LYPH01000099.1	Genbank	gene	61885	62094	.	+	.	ID=gene-A8144_04765;Name=A8144_04765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04765
LYPH01000099.1	GeneMarkS+	CDS	61885	62094	.	+	0	ID=cds-OAR19575.1;Parent=gene-A8144_04765;Dbxref=NCBI_GP:OAR19575.1;Name=OAR19575.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04765;product=hypothetical protein;protein_id=OAR19575.1;transl_table=11
LYPH01000099.1	Genbank	pseudogene	62459	63018	.	-	.	ID=gene-A8144_04770;Name=A8144_04770;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_04770;pseudo=true
LYPH01000099.1	Protein Homology	CDS	62459	63018	.	-	0	ID=cds-A8144_04770;Parent=gene-A8144_04770;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003416005.1;locus_tag=A8144_04770;product=hypothetical protein;pseudo=true;transl_table=11
LYPH01000099.1	Genbank	gene	63015	63338	.	-	.	ID=gene-A8144_04775;Name=A8144_04775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04775
LYPH01000099.1	Protein Homology	CDS	63015	63338	.	-	0	ID=cds-OAR19576.1;Parent=gene-A8144_04775;Dbxref=NCBI_GP:OAR19576.1;Name=OAR19576.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q9CBP1.1;locus_tag=A8144_04775;product=multidrug transporter;protein_id=OAR19576.1;transl_table=11
LYPH01000099.1	Genbank	gene	63596	64972	.	+	.	ID=gene-A8144_04780;Name=A8144_04780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04780
LYPH01000099.1	Protein Homology	CDS	63596	64972	.	+	0	ID=cds-OAR19577.1;Parent=gene-A8144_04780;Dbxref=NCBI_GP:OAR19577.1;Name=OAR19577.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908524.1;locus_tag=A8144_04780;product=L-serine ammonia-lyase;protein_id=OAR19577.1;transl_table=11
LYPH01000099.1	Genbank	gene	67021	67362	.	+	.	ID=gene-A8144_04785;Name=A8144_04785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04785
LYPH01000099.1	GeneMarkS+	CDS	67021	67362	.	+	0	ID=cds-OAR19578.1;Parent=gene-A8144_04785;Dbxref=NCBI_GP:OAR19578.1;Name=OAR19578.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04785;product=hypothetical protein;protein_id=OAR19578.1;transl_table=11
LYPH01000099.1	Genbank	gene	67541	70861	.	+	.	ID=gene-A8144_04790;Name=A8144_04790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04790
LYPH01000099.1	Protein Homology	CDS	67541	70861	.	+	0	ID=cds-OAR19579.1;Parent=gene-A8144_04790;Dbxref=NCBI_GP:OAR19579.1;Name=OAR19579.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908523.1;locus_tag=A8144_04790;product=transcriptional regulator;protein_id=OAR19579.1;transl_table=11
LYPH01000099.1	Genbank	gene	72402	73310	.	+	.	ID=gene-A8144_04795;Name=A8144_04795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04795
LYPH01000099.1	Protein Homology	CDS	72402	73310	.	+	0	ID=cds-OAR19591.1;Parent=gene-A8144_04795;Dbxref=NCBI_GP:OAR19591.1;Name=OAR19591.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908522.1;locus_tag=A8144_04795;product=EAL domain-containing protein;protein_id=OAR19591.1;transl_table=11
LYPH01000099.1	Genbank	gene	74455	75162	.	+	.	ID=gene-A8144_04800;Name=A8144_04800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04800
LYPH01000099.1	Protein Homology	CDS	74455	75162	.	+	0	ID=cds-OAR19580.1;Parent=gene-A8144_04800;Dbxref=NCBI_GP:OAR19580.1;Name=OAR19580.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_003911502.1;locus_tag=A8144_04800;product=hypothetical protein;protein_id=OAR19580.1;transl_table=11
LYPH01000099.1	Genbank	gene	75315	75497	.	+	.	ID=gene-A8144_04805;Name=A8144_04805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04805
LYPH01000099.1	GeneMarkS+	CDS	75315	75497	.	+	0	ID=cds-OAR19581.1;Parent=gene-A8144_04805;Dbxref=NCBI_GP:OAR19581.1;Name=OAR19581.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_04805;product=hypothetical protein;protein_id=OAR19581.1;transl_table=11
LYPH01000099.1	Genbank	gene	75454	77619	.	+	.	ID=gene-A8144_04810;Name=A8144_04810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04810
LYPH01000099.1	Protein Homology	CDS	75454	77619	.	+	0	ID=cds-OAR19582.1;Parent=gene-A8144_04810;Dbxref=NCBI_GP:OAR19582.1;Name=OAR19582.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908521.1;locus_tag=A8144_04810;product=hypothetical protein;protein_id=OAR19582.1;transl_table=11
LYPH01000099.1	Genbank	gene	77637	79517	.	+	.	ID=gene-A8144_04815;Name=A8144_04815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_04815
LYPH01000099.1	Protein Homology	CDS	77637	79517	.	+	0	ID=cds-OAR19583.1;Parent=gene-A8144_04815;Dbxref=NCBI_GP:OAR19583.1;Name=OAR19583.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011725275.1;locus_tag=A8144_04815;product=hypothetical protein;protein_id=OAR19583.1;transl_table=11
##sequence-region LYPH01000100.1 1 3297
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000100.1	Genbank	region	1	3297	.	+	.	ID=LYPH01000100.1:1..3297;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000100.1	Genbank	gene	612	2048	.	+	.	ID=gene-A8144_14065;Name=A8144_14065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14065
LYPH01000100.1	Protein Homology	CDS	612	2048	.	+	0	ID=cds-OAR19532.1;Parent=gene-A8144_14065;Dbxref=NCBI_GP:OAR19532.1;Name=OAR19532.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_018599465.1;locus_tag=A8144_14065;product=type I glutamate--ammonia ligase;protein_id=OAR19532.1;transl_table=11
LYPH01000100.1	Genbank	gene	2300	2668	.	-	.	ID=gene-A8144_14070;Name=A8144_14070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14070
LYPH01000100.1	Protein Homology	CDS	2300	2668	.	-	0	ID=cds-OAR19533.1;Parent=gene-A8144_14070;Dbxref=NCBI_GP:OAR19533.1;Name=OAR19533.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908032.1;locus_tag=A8144_14070;product=hypothetical protein;protein_id=OAR19533.1;transl_table=11
LYPH01000100.1	Genbank	gene	2760	3068	.	-	.	ID=gene-A8144_14075;Name=A8144_14075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14075
LYPH01000100.1	Protein Homology	CDS	2760	3068	.	-	0	ID=cds-OAR19534.1;Parent=gene-A8144_14075;Dbxref=NCBI_GP:OAR19534.1;Name=OAR19534.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908033.1;locus_tag=A8144_14075;product=hypothetical protein;protein_id=OAR19534.1;transl_table=11
##sequence-region LYPH01000101.1 1 3218
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000101.1	Genbank	region	1	3218	.	+	.	ID=LYPH01000101.1:1..3218;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000101.1	Genbank	gene	1	1482	.	-	.	ID=gene-A8144_14080;Name=A8144_14080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14080;partial=true;start_range=.,1
LYPH01000101.1	Protein Homology	CDS	1	1482	.	-	0	ID=cds-OAR19530.1;Parent=gene-A8144_14080;Dbxref=NCBI_GP:OAR19530.1;Name=OAR19530.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_009953407.1;locus_tag=A8144_14080;partial=true;product=L-asparagine permease;protein_id=OAR19530.1;start_range=.,1;transl_table=11
LYPH01000101.1	Genbank	gene	1632	3149	.	-	.	ID=gene-A8144_14085;Name=A8144_14085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14085
LYPH01000101.1	Protein Homology	CDS	1632	3149	.	-	0	ID=cds-OAR19531.1;Parent=gene-A8144_14085;Dbxref=NCBI_GP:OAR19531.1;Name=OAR19531.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908259.1;locus_tag=A8144_14085;product=L-asparagine permease;protein_id=OAR19531.1;transl_table=11
##sequence-region LYPH01000102.1 1 2979
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000102.1	Genbank	region	1	2979	.	+	.	ID=LYPH01000102.1:1..2979;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000102.1	Genbank	gene	192	2915	.	+	.	ID=gene-A8144_14090;Name=A8144_14090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14090
LYPH01000102.1	Protein Homology	CDS	192	2915	.	+	0	ID=cds-OAR19529.1;Parent=gene-A8144_14090;Dbxref=NCBI_GP:OAR19529.1;Name=OAR19529.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_007776140.1;locus_tag=A8144_14090;product=DNA polymerase I;protein_id=OAR19529.1;transl_table=11
##sequence-region LYPH01000103.1 1 2854
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000103.1	Genbank	region	1	2854	.	+	.	ID=LYPH01000103.1:1..2854;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000103.1	Genbank	gene	168	563	.	-	.	ID=gene-A8144_14095;Name=A8144_14095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14095
LYPH01000103.1	Protein Homology	CDS	168	563	.	-	0	ID=cds-OAR19526.1;Parent=gene-A8144_14095;Dbxref=NCBI_GP:OAR19526.1;Name=OAR19526.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907949.1;locus_tag=A8144_14095;product=transcriptional repressor;protein_id=OAR19526.1;transl_table=11
LYPH01000103.1	Genbank	gene	637	1059	.	-	.	ID=gene-A8144_14100;Name=A8144_14100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14100
LYPH01000103.1	Protein Homology	CDS	637	1059	.	-	0	ID=cds-OAR19527.1;Parent=gene-A8144_14100;Dbxref=NCBI_GP:OAR19527.1;Name=OAR19527.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:O05840.1;locus_tag=A8144_14100;product=ArsR family transcriptional regulator;protein_id=OAR19527.1;transl_table=11
LYPH01000103.1	Genbank	gene	1226	2617	.	+	.	ID=gene-A8144_14105;Name=A8144_14105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14105
LYPH01000103.1	Protein Homology	CDS	1226	2617	.	+	0	ID=cds-OAR19528.1;Parent=gene-A8144_14105;Dbxref=NCBI_GP:OAR19528.1;Name=OAR19528.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010907951.1;locus_tag=A8144_14105;product=glycine--tRNA ligase;protein_id=OAR19528.1;transl_table=11
##sequence-region LYPH01000104.1 1 2773
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000104.1	Genbank	region	1	2773	.	+	.	ID=LYPH01000104.1:1..2773;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000104.1	Genbank	pseudogene	1363	2648	.	+	.	ID=gene-A8144_14110;Name=A8144_14110;gbkey=Gene;gene_biotype=pseudogene;locus_tag=A8144_14110;pseudo=true
LYPH01000104.1	Protein Homology	CDS	1363	2648	.	+	0	ID=cds-A8144_14110;Parent=gene-A8144_14110;Note=frameshifted%3B internal stop;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_011799114.1;locus_tag=A8144_14110;product=phosphoribosyl transferase;pseudo=true;transl_table=11
##sequence-region LYPH01000105.1 1 2730
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000105.1	Genbank	region	1	2730	.	+	.	ID=LYPH01000105.1:1..2730;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000105.1	Genbank	gene	381	710	.	-	.	ID=gene-A8144_14115;Name=A8144_14115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14115
LYPH01000105.1	GeneMarkS+	CDS	381	710	.	-	0	ID=cds-OAR19524.1;Parent=gene-A8144_14115;Dbxref=NCBI_GP:OAR19524.1;Name=OAR19524.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_14115;product=hypothetical protein;protein_id=OAR19524.1;transl_table=11
LYPH01000105.1	Genbank	gene	2103	2339	.	-	.	ID=gene-A8144_14120;Name=A8144_14120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14120
LYPH01000105.1	GeneMarkS+	CDS	2103	2339	.	-	0	ID=cds-OAR19525.1;Parent=gene-A8144_14120;Dbxref=NCBI_GP:OAR19525.1;Name=OAR19525.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS+;locus_tag=A8144_14120;product=hypothetical protein;protein_id=OAR19525.1;transl_table=11
##sequence-region LYPH01000106.1 1 2544
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000106.1	Genbank	region	1	2544	.	+	.	ID=LYPH01000106.1:1..2544;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
LYPH01000106.1	Genbank	gene	204	503	.	+	.	ID=gene-A8144_14125;Name=A8144_14125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14125
LYPH01000106.1	Protein Homology	CDS	204	503	.	+	0	ID=cds-OAR19520.1;Parent=gene-A8144_14125;Dbxref=NCBI_GP:OAR19520.1;Name=OAR19520.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_010908098.1;locus_tag=A8144_14125;product=hypothetical protein;protein_id=OAR19520.1;transl_table=11
LYPH01000106.1	Genbank	gene	560	1813	.	+	.	ID=gene-A8144_14130;Name=A8144_14130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14130
LYPH01000106.1	Protein Homology	CDS	560	1813	.	+	0	ID=cds-OAR19521.1;Parent=gene-A8144_14130;Dbxref=NCBI_GP:OAR19521.1;Name=OAR19521.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:RefSeq:WP_014000724.1;locus_tag=A8144_14130;product=hypothetical protein;protein_id=OAR19521.1;transl_table=11
LYPH01000106.1	Genbank	gene	1876	2178	.	+	.	ID=gene-A8144_14135;Name=A8144_14135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14135
LYPH01000106.1	Protein Homology	CDS	1876	2178	.	+	0	ID=cds-OAR19522.1;Parent=gene-A8144_14135;Dbxref=NCBI_GP:OAR19522.1;Name=OAR19522.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49945.1;locus_tag=A8144_14135;product=ESAT-6-like protein Y;protein_id=OAR19522.1;transl_table=11
LYPH01000106.1	Genbank	gene	2230	2517	.	+	.	ID=gene-A8144_14140;Name=A8144_14140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=A8144_14140
LYPH01000106.1	Protein Homology	CDS	2230	2517	.	+	0	ID=cds-OAR19523.1;Parent=gene-A8144_14140;Dbxref=NCBI_GP:OAR19523.1;Name=OAR19523.1;gbkey=CDS;inference=EXISTENCE: similar to AA sequence:SwissProt:Q49946.1;locus_tag=A8144_14140;product=type VII secretion protein EsxI;protein_id=OAR19523.1;transl_table=11
##sequence-region LYPH01000107.1 1 2419
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1297123
LYPH01000107.1	Genbank	region	1	2419	.	+	.	ID=LYPH01000107.1:1..2419;Dbxref=taxon:1297123;collection-date=2012;gbkey=Src;isolation-source=patient;mol_type=genomic DNA;nat-host=Homo sapiens;strain=3125609
###