core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1139852	1141102	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	1	1251	GCA_000010485_1_1_1027	GCA_000010485_1_1_1027	+	4717338	.	PRK07006	isocitrate dehydrogenase; Reviewed	MESKVVVPAQGKKITLQNGKLNVPENPIIPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETLDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMEGAKLLKCSEFGDAIIKNM*	mmseqs_cdd	nonviral_gene	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0001	persistent	direct	high	1250	0.999	GCA_000010485.1_01104
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1141216	1142358	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	1365	2507	GCA_000010485_1_1_1028	GCA_000010485_1_1_1028	-	4717338	.	PDB:1Z19_B	Integrase	MAARPRSHKISIPNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNERLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKDITALDIAEIIDAVKAEGHNRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNRVNRQRLSLPEWQAIFDSVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQEKTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLTTAFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDTQKLLGHKSRKMTDRYNDDRGKDWIIVDIKTA*	common_virus_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0002	cloud	direct	high	1142	0.999	GCA_000010485.1_01105
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1142348	1142584	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	2497	2733	GCA_000010485_1_1_1029	GCA_000010485_1_1_1029	-	4717338	.	PFAM:PF11112.7	excisionase	MSRLITLQDWAKEEFGDLAPSERVLKKYAQGKMMAPPAIKVGRYWMIDRNSRFVGTLAEPQLPINANPKLQRIIADGC*	phrogs_hmm	hypothetical_protein	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0003	cloud	direct	high	236	0.996	GCA_000010485.1_01106
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1142724	1142963	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	2873	3112	GCA_000010485_1_1_1030	GCA_000010485_1_1_1030	-	4717338	.	PF13973.6	Domain of unknown function (DUF4222)	MFRIIFPNTWYVDHHGTPCKILRSTHNKVHYIRKGRTCIASMFRFNHDFEPVNKADADRIAEEIETAEHIKKLRAIRRK*	hhsuite_tools	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0004	cloud	direct	high	239	0.996	GCA_000010485.1_01107
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1143011	1143229	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	3160	3378	GCA_000010485_1_1_1031	GCA_000010485_1_1_1031	-	4717338	.	PHA00080	DksA-like zinc finger domain containing protein	MADIIDSASEIEELQRNTAIKMRRLNHQAISATHCCECGDPIDERRRLAVQGCRTCASCQEEIELKNKQWGL*	mmseqs_cdd	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0005	cloud	direct	high	218	0.995	GCA_000010485.1_01108
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1143236	1143325	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	3385	3474	GCA_000010485_1_1_1032	GCA_000010485_1_1_1032	-	4717338	.	.	hypothetical protein	MKNKIIMELQAPFLLFAFTLKRINQQFRD*	.	hypothetical_protein	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0006	cloud	direct	moderate	89	0.989	GCA_000010485.1_01109
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1143328	1143543	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	3477	3692	GCA_000010485_1_1_1033	GCA_000010485_1_1_1033	-	4717338	.	.	hypothetical protein	MTPQQENALRSIARQANYEIKKARQQFPDKNVDDICRSVLKKHRETVTLMGFTPTHLSLAIGMLNGVFKER*	.	hypothetical_protein	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0007	cloud	direct	high	215	0.995	GCA_000010485.1_01110
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1143620	1143769	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	3769	3918	GCA_000010485_1_1_1034	GCA_000010485_1_1_1034	-	4717338	.	pfam07131	Protein of unknown function (DUF1382). This family consists of several hypothetical Escherichia coli and bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	MAHSLAQIGVRFVPIPVETDEEFHTLATSLSQKLEMMVAKAEADERDQV*	mmseqs_cdd	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0008	cloud	direct	high	149	0.993	GCA_000010485.1_01111
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1143784	1143966	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	3933	4115	GCA_000010485_1_1_1035	GCA_000010485_1_1_1035	-	4717338	.	pfam07026	Protein of unknown function (DUF1317). This family consists of several hypothetical bacterial and phage proteins of around 60 residues in length. The function of this family is unknown.	MTHPHDNIRVGAITFVYSVTKRGWVFPGLSVIQNPLKAQRLAEEINNKRGAVCTKHLPLS*	mmseqs_cdd	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0009	shell	direct	high	182	0.995	GCA_000010485.1_01112
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1143963	1144643	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	4112	4792	GCA_000010485_1_1_1036	GCA_000010485_1_1_1036	-	4717338	.	PDB:3SZ4_A	Exonuclease	MTPDIILQRTGIDVRAVEQGDDAWHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPEVNAKALAWGKQYENDARTLFKFTSGVNVTESPIIYRDESMRTACSPDGLCSDGNGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQYSMWVTRKDAWYFANYDPRMKREGLHYVVVERDEKYMASFDEMVPEFIEKMDEALAEIGFVFGEQWR*	common_virus_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0010	shell	direct	high	680	0.999	GCA_000010485.1_01113
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1144640	1145425	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	4789	5574	GCA_000010485_1_1_1037	GCA_000010485_1_1_1037	-	4717338	.	PFAM:PF03837.13	RecT-protein	MSTALATLAGKLAERVGMDSVDPQELITTLRQTAFKGDASDAQFIALLIVANQYGLNPWTKEIYAFPDKQNGIVPVVGVDGWSRIINENQQFDGMDFEQDNESCTCRIYRKDRNHPICVTEWMDECRREPFKTREGREITGPWQSHPKRMLRHKAMIQCARLAFGFAGIYDKDEAERIVENTAYTAERQPERDITPVNDETMQEINTLLIALDKTWDDDLLPLCSQIFRRDIRASSELTQAEAVKALGFLKQKATEQKVAA*	common_virus_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0011	shell	direct	high	785	0.999	GCA_000010485.1_01114
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1145431	1145727	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	5580	5876	GCA_000010485_1_1_1038	GCA_000010485_1_1_1038	-	4717338	.	pfam06064	Host-nuclease inhibitor protein Gam. The Gam protein inhibits RecBCD nuclease and is found in both bacteria and bacteriophage.	MNAYYIQDRLEAQSWARHYQQIAREEKEAELADDMEKGLPQHLFESLCIDHLQRCGANKKAITRAFDDDVEFQERMAEHIRYMVETIAHHHVDIDSEV*	mmseqs_cdd	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0012	cloud	direct	high	296	0.997	GCA_000010485.1_01115
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1145803	1146009	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	5952	6158	GCA_000010485_1_1_1039	GCA_000010485_1_1_1039	-	4717338	.	PRK11354	FtsZ inhibitor protein; Reviewed	MVHQHYGTQTVNRGAVMPGMLVKHKDGTWTASANLRGRLYLHRGIERTYTRDLLVEVFLDGRGNGLNH*	mmseqs_cdd	nonviral_gene	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0013	cloud	direct	high	206	0.995	GCA_000010485.1_01116
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1146485	1146862	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	6634	7011	GCA_000010485_1_1_1040	GCA_000010485_1_1_1040	-	4717338	.	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains [Transcription]. 	MKVLLSIKPEFAEKILNGTKRFEFRKGIFKNPQISTVVIYATMPLGKVVGQFRIESILSDEPESLWKKTEKHAGISKQFYDSYYSGREKAYAIKIGEVERYKEPIPISALGSNIKPPQSYLYLPA*	mmseqs_cdd	nonviral_gene	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0014	cloud	direct	high	377	0.997	GCA_000010485.1_01117
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1146840	1147901	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	6989	8050	GCA_000010485_1_1_1041	GCA_000010485_1_1_1041	-	4717338	.	PFAM:PF13523.5	acetyltransferase	MDTLKYEKFSDFDHNDPFFDSLKKDYKEFPLWLEKKAREGESAYVLYDDKHKIEGFMYLKENDDANDINPALPPGRHLKIGTFKFESKGTLRGQRFLKKAFDHAFSSKSDDIYVTVFDKHVHLIKLFQTYGFYIHGEKETHNGKEFVYARSLHEPYGDILLDYPRIMTSRANKYLLAIYPEYHTRLFPDSKLVNESPDIVKDISHANSIHKIYICGMRSVMGMKRGDIIVIYRTGDKKGPARYRSVASTLCVVESVKNISEFLSEDSFVDYCIRFSVFSEDELRKIYKERRYPFIIRFTYNLSLPKRPNRAILIDHVGLNGSRAFRWSHFKLTNEQFLKIIELGKINESFIIH*	phrogs_hmm	hypothetical_protein	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0015	cloud	direct	high	1061	0.999	GCA_000010485.1_01118
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1147982	1148467	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	8131	8616	GCA_000010485_1_1_1042	GCA_000010485_1_1_1042	-	4717338	.	PDB:2FJR_A	Repressor-protein-CI	MRNDGQQLGKPTANHPKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKDKLLVISDNKSYSPWDPIEKDEMNRVFIFGKVIGSMPQTYRKHG*	common_virus_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0016	cloud	direct	high	485	0.998	GCA_000010485.1_01119
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1148785	1149012	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	8934	9161	GCA_000010485_1_1_1043	GCA_000010485_1_1_1043	+	4717338	.	pfam15943	Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	MTNQTIQLAISITGSQKRLADLCGVAQPTVWRWLHGGGIDARYVMKIVSATGGKIKPADIRPDLAPLFNASNSAA*	mmseqs_cdd	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0017	cloud	direct	high	227	0.996	GCA_000010485.1_01120
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1149043	1149582	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	9192	9731	GCA_000010485_1_1_1044	GCA_000010485_1_1_1044	+	4717338	.	pfam06254	Putative bacterial toxin ydaT. YdaT_toxin is a family of putative bacterial toxins that are neutralized by the putative antitoxin YdaS, UniProtKB:P76063, family pfam144549.	MQPLTYQQTSGFSPTAVINRSQTKQAPGHEKIRDAVRAWSAADNQDVVAALIVNEYREQGGGTIDFPDDVSRARQKLFRFLDNKFDSEKYRNNVRELTPAILAVLPLEYRGHLVEQDSFMARLAEMEKELSEAKQAVILNAPRHQKLKEMSEGIVSMFRVDPDLAGPLMAMVTTMLGAI*	mmseqs_cdd	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0018	cloud	direct	high	539	0.998	GCA_000010485.1_01121
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1149594	1150598	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	9743	10747	GCA_000010485_1_1_1045	GCA_000010485_1_1_1045	+	4717338	.	PFAM:PF04492.12	Replication-protein-O	MAKAGLREQNRLSGANRNTLIAGGIMANTAEIFNFPVPDVAQKEPRVADLDDGYTRIANELLEAVMLAGLTQHQLLVFLAVMRKTYGFNKKLDWVSNEQLSELTGILPHKCSAAKSVLVKRGIFIQSGRNIGINNVVSEWSTLPESGKKNKVYLKEVNLPESGKKSLPKSGKGVYPNQVNTKDKLTKDNIKPFSSENSDESSDQPENDLPVVKPDAAIQSGSKWGTAEDLTAAEWMFDMVKTIAPSARKPNFAGWANDIRLMRERDGRNHRDMCVLFRWACQDNFWSGNVLSPAKLRDKWTQLEINRNKQQAGVTAGKSKLDLTNTDWIYGVDL*	rep_hall_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0019	cloud	direct	high	1004	0.999	GCA_000010485.1_01122
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1150595	1151296	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	10744	11445	GCA_000010485_1_1_1046	GCA_000010485_1_1_1046	+	4717338	.	PFAM:PF06992.10	Replication-protein-P	MKNIAAQMVNFDREQMRRIANNMPEQYDEKPQVQQVAQIINGVFSQLLATFPASLANRDQNELNEIRRQWVLAFRENGITTMEQVNAGMRVARRQNRPFLPSPGQFVAWCREEASVIAGLPNVSELVDMVYEYCRKRGLYPDAESYPWKSNAHYWLVTNLYQNMRANALTDAELRRKAADELVHMTARINRGEAIPEPVKQLPVMGGRPLNRAQALAKIAEIKAKFGLKGASV*	rep_hall_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0020	cloud	direct	high	701	0.999	GCA_000010485.1_01123
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1151293	1151595	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	11442	11744	GCA_000010485_1_1_1047	GCA_000010485_1_1_1047	+	4717338	.	PFAM:PF04079.15	Ren-like-exclusion-protein	MTGKEAIIHYLGTHKSFCAQDVAAVTGATVTSINQAVAKMARAGILVVDGKVWRTVYYRFATREEREGKVSANLIFKECRQSAAMKRVLRVYKRTSMGTQ*	phrogs_hmm	hypothetical_protein	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0021	shell	direct	high	302	0.997	GCA_000010485.1_01124
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1151663	1151995	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	11812	12144	GCA_000010485_1_1_1048	GCA_000010485_1_1_1048	+	4717338	.	PRK09541	EmrE family multidrug efflux SMR transporter. 	MNPYIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSRSTPH*	mmseqs_cdd	nonviral_gene	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0022	shell	direct	high	332	0.997	GCA_000010485.1_01125
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1152251	1153777	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	12400	13926	GCA_000010485_1_1_1049	GCA_000010485_1_1_1049	+	4717338	.	PDB:4BQQ_A	Integrase	MKKAIAYMRFSSPGQMSGDSLNRQRRLITEWLKVNSDYYLDTVTYEDLGLSAFNGKHAQSGAFSEFLDAIEHGYILPGTTLLVESLDRLSREKVGEAIERLKLILNHGIDVITLCDNTVYNIDSLNEPYSLIKAILIAQRANEESEIKSSRVKLSWKKKRQDALESGTIMTASCPRWLSLDDKRTAFIPDPDRVKTIELIFKLRMERRSLNAIAKYLNDHAVKNFSGKESAWGPSVIEKLLANKALIGICVPSYRARGKGISEIAGYYPRVISDDLFYAVQEIRLAPFGISNSSKNPMLINLLRTVMKCEACGNTMIVHAVSGRLHGYYVCPMRRLHRCDRPSIKRDLVDYNIINELLFNCSKIQPVENKKDANETLELKIIELQMKINNLIVALSVAPEVTAIAEKIRLLDKELRRASVSLKTLKSKGVSSLGDFHAIDLTSKNGRELCRTLAYKIFEKIIINTDNKTCDIYFMNGIVFKHYPLMKVISAQQAISTLKYMVDGEVYF*	common_virus_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0023	cloud	direct	high	1526	0.999	GCA_000010485.1_01126
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1154127	1155170	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	14276	15319	GCA_000010485_1_1_1050	GCA_000010485_1_1_1050	-	4717338	.	PFAM:PF08538.9	esterase	MKINKILSSATLLYGMSMAMSVGSCATPVQTNLPGYTPGADIISVSPTRNQVDLIGDVVYSQIKGTRSVRQLHMSVLVPRTNDLKPAIIYYPGGGFMSSEHDKFIEMRMALAEAGFVVAAVEYRTIPDTFPAPVEDGKAAIRYLREHASNYGIDPQRIGVLGDSAGGWLAQMMGTTNGDKTFDKGDFLQQSSDVQAVATLYGISDLLNIGEGFPESVQEVHRSPAVTEALMINGPAFRNFAGAPITASKEKALNASPIGHMKGVKPPFLIMHGSKDTLVSPEQSAKLFRMLKKNGDNAEYVLVEGAEHGDNTWYQPIIINRVVEWFTKNLGTPIKTATQQQKTNADL*	phrogs_hmm	nonviral_gene	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0024	cloud	direct	high	1043	0.999	GCA_000010485.1_01127
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1155618	1156073	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	15767	16222	GCA_000010485_1_1_1051	GCA_000010485_1_1_1051	+	4717338	.	PFAM:PF05772.11	NinB/-Orf-homologous-recombination-mediator	MNLPQDGIKLHRGNFIAIGQQIQPYLEDGKCFRMVLKPWREKRSLSQNALSHMWYSEISEYLISRGKSFATAAWVKDALKHTYLGYETKDLVDVVTGEITTIQSLRHTSDLDTGEMYVFLCKVEAWAMNIGCHLTIPQSCEFQLLRDKQEA*	phrogs_hmm	nonviral_gene	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0025	cloud	direct	high	455	0.998	GCA_000010485.1_01128
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1156073	1156243	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	16222	16392	GCA_000010485_1_1_1052	GCA_000010485_1_1_1052	+	4717338	.	PRK09689	prophage protein NinE; Provisional	MATPLIRVMNGHIYKVPNRRKRKPELKPSEIPTLLGYTASLVDKKWLRLAARRNHG*	mmseqs_cdd	nonviral_gene	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0026	cloud	direct	high	170	0.994	GCA_000010485.1_01129
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1156236	1156526	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	16385	16675	GCA_000010485_1_1_1053	GCA_000010485_1_1_1053	+	4717338	.	pfam07102	Protein of unknown function (DUF1364). This family consists of several bacterial and phage proteins of around 95 residues in length. The function of this family is unknown.	MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLAGLCCTGIKPPDLIATIACSACHDEIDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIEA*	mmseqs_cdd	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0027	cloud	direct	high	290	0.997	GCA_000010485.1_01130
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1156523	1156885	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	16672	17034	GCA_000010485_1_1_1054	GCA_000010485_1_1_1054	+	4717338	.	PFAM:PF05866.10	Endodeoxyribonuclease-Rus	MNTYSITLPWPPSNNRYYRHNRGRTHISAEGQAYRDNVARIIKNAMLDIGLAIPVKISIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGKLELTITELGDE*	common_virus_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0028	shell	direct	high	362	0.997	GCA_000010485.1_01131
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1156885	1157022	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	17034	17171	GCA_000010485_1_1_1055	GCA_000010485_1_1_1055	+	4717338	.	NF033498	YlcG family protein. Members of this family include YlcG from the DLP12 prophage region of Eschichia coli K-12, and homologs from the Gifsy-1 and Gifsy-2 prophage regions of Salmonella enterica subsp. enterica serovar Typhimurium str. LT2. Members of this protein family are small, about 46 amino acids long. YlcG is known to be expressed. It is encoded immediately downstream of the Holliday junction resolvase RusA.	MFESYMAERLRRRWVRLRLYRFPGSVLTDYRILKNYAKTLTGAGV*	mmseqs_cdd	nonviral_gene	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0029	shell	direct	high	137	0.993	GCA_000010485.1_01132
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1157108	1157491	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	17257	17640	GCA_000010485_1_1_1056	GCA_000010485_1_1_1056	+	4717338	.	pfam06530	Phage antitermination protein Q. This family consists of several phage antitermination protein Q and related bacterial sequences. Antiterminator proteins control gene expression by recognising control signals near the promoter and preventing transcriptional termination which would otherwise occur at sites that may be a long way downstream.	MRDIQMVLERWGAWAANNHEDVTWSSVAAGFKGLIPSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVCGMTFMSLASKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLDMDIVANNSN*	mmseqs_cdd	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0030	shell	direct	high	383	0.997	GCA_000010485.1_01133
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1157680	1158762	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	17829	18911	GCA_000010485_1_1_1057	GCA_000010485_1_1_1057	-	4717338	.	PRK10554	outer membrane porin protein C; Provisional	MKKLTVAISAVAASVLMAMSAQAAEIYNKDSNKLDLYGKVNAKHYFSSNDADDGDTTYARLGFKGETQINDQLTGFGQWEYEFKGNRAESQGSSKDKTRLAFAGLKFGDYGSIDYGRNYGVAYDIGAWTDVLPEFGGDTWTQTDVFMTGRTTGVATYRNNDFFGLVDGLNFAAQYQGKNDRTDVTEVNGDGFGFSTTYEYEGFGVGATYAKSDRTDGQVAYGKSKFNASGKNAEVWAAGLKYDANNIYLATTYSETQNMTVFGNNHIANKAQNFEAVAQYQFDFGLRPSVAYLQSKGKDLGVHGDRDLVKYVDVGATYYFNKNMSTFVDYKINLIDDSKFTKTAGIDTDDIVAVGLVYQF*	mmseqs_cdd	nonviral_gene	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0031	shell	direct	high	1082	0.999	GCA_000010485.1_01134
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1159352	1159567	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	19501	19716	GCA_000010485_1_1_1058	GCA_000010485_1_1_1058	+	4717338	.	pfam04971	Bacteriophage P21 holin S. Phage_holin_2_1 is a family of small hydrophobic holin proteins with one or more transmembrane domains. Members of this family fall into the holin superfamily II, and Phage 21 S holin is the prototype for this superfamily. It has two transmembrane segments with both the N- and C-termini on the cytoplasmic side of the inner membrane in E. coli. Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis. It is thought that the temporal precision of holin-mediated lysis may occur through the build up of a holin oligomer which causes the lysis.	MKSMDKLTTGVAYGTSAGSAGYWFLQLLDKVTPSQWAAIGVLGSLVFGLLTYLTNLYFKIKEDKRKAARGE*	mmseqs_cdd	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0032	persistent	direct	high	215	0.995	GCA_000010485.1_01135
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1159567	1160064	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	19716	20213	GCA_000010485_1_1_1059	GCA_000010485_1_1_1059	+	4717338	.	CDD:cd16900	endolysin-R21-like-protein	MSPSLRKAIAAAIGGGAVAIASVLITGPSGDDGLEGVSYIPYKDIVGVWTVCHGHTGKDIMLGKTYTEAECKALLNKDLATVARQINPYIKVDIPETTRGALYSFVYNVGAGNFRTSTLLRKINQGDIKGACDQLRRWTYAGGKQWKGLMTRREIEREVCLWGQQ*	common_virus_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0033	shell	direct	high	497	0.998	GCA_000010485.1_01136
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1160061	1160504	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	20210	20653	GCA_000010485_1_1_1060	GCA_000010485_1_1_1060	+	4717338	.	pfam03245	Bacteriophage Rz lysis protein. This protein is involved in host lysis. This family is not considered to be a peptidase according to the MEROPs database. This family Rz and the Rz1 protein (pfam06085) represent a unique example of two genes located in different reading frames in the same nucleotide sequence, which encode different proteins that are both required in the same physiological pathway.	MSRVTAIISALVICIIVCLSWAVNHYRDNAIAYKEQRDKAASTIADMQKRQRDVAELDARYTKELADANATIESLRADVFAGRKWLRVKAVCPDMHKTTAASGVDDGASPRLTDTAQRDYFVLRERIETVTNQLNGLQEYVRSQCSY*	mmseqs_cdd	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0034	cloud	direct	high	443	0.998	GCA_000010485.1_01137
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1160543	1160917	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	20692	21066	GCA_000010485_1_1_1061	GCA_000010485_1_1_1061	+	4717338	.	.	hypothetical protein	MSQYAQAALNAYQLVAHNSMSPRDAWEAAVAEVTESESARKKGCPRATFLALADSGYLKNVKQHHGEKKIGKLYQRAIEVANLILDLPGISKAELVDKTCYKDRQGSYDIALTLAQHGLLQRPQ*	.	hypothetical_protein	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0035	cloud	direct	high	374	0.997	GCA_000010485.1_01138
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1161016	1161198	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	21165	21347	GCA_000010485_1_1_1062	GCA_000010485_1_1_1062	-	4717338	.	.	hypothetical protein	MRDKPANNKRGKNPVCIVFDYSRTLAQKEFPVGLRSWLMQEYGDDTAHNVSGLNTFIESR*	.	hypothetical_protein	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0036	cloud	direct	high	182	0.995	GCA_000010485.1_01139
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1161509	1162057	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	21658	22206	GCA_000010485_1_1_1063	GCA_000010485_1_1_1063	+	4717338	.	CDD:pfam07471	DNA-packaging-protein	MKVNKKRLAEIFNVDPRTIERWQSQGLPCASKGSKGIESVFDTAMAIQWYAQRETDIENEKLRKELDDLRAAAESDLQPGTIDYERYRLTKAQADAQELKNAREDGVVLETELFTFILQRVAQEISGILVRVPLTLQRKYPDISPSHLDVVKTEIAKASNVAAKAGENVGGWIDDFRRAEGS*	hallmark_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0037	cloud	direct	high	548	0.998	GCA_000010485.1_01140
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1162029	1163957	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	22178	24106	GCA_000010485_1_1_1064	GCA_000010485_1_1_1064	+	4717338	.	PFAM:PF05876.11	Large-Terminase	MISDAQKAANAAGAIATGLLSLIIPVPLTTVQWANKHYYLPKESSYTPGRWETLPFQVGIMNCMGNDLIRTVNLIKSARVGYTKMLLGVEAYFIEHKSRNSLLFQPTDSAAEDFMKSHVEPTIRDVPALLELAPWFGRKHRDNTLTLKRFSSGVGFWCLGGAAAKNYREKSVDVVCYDELSSFEPDVEKEGSPTLLGDKRIEGSVWPKSIRGSTPKIKGSCQIEKAANESAHFMRFYVPCPHCGEEQYLKFGDDASPFGLKWEKNKPESVFYLCEHHGCVIHQSELDQSNGRWICENTGMWTRDGLMFFSARGDEIPPPRSITFHIWTAYSPFTTWVQIVYDWLDALKDPNGLKTFVNTTLGETWEEAVGEKLDHQVLMDKVVRYTAAVPARVVYLTAGIDSQRNRFEMYVWGWAPGEEAFLVDKIIIMGRPDEEETLLRVDAAINKKYRHADGTEMTISRVCWDIGGIDGEIVYQRSKKHGVFRVLPVKGASVYGKPVITMPKTRNQRGVYLCEVGTDTAKEILYARMKADPTPVDEATSYAIRFPDDPDIFSQTEAQQLVAEELVEKWEKGKMRLLWDNKKRRNEALDCLVYAYAALRVSVQRWQLDLAVLAKSREEETTRPTLKELAAKLSGGVNGYSR*	hallmark_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0038	cloud	direct	high	1928	0.999	GCA_000010485.1_01141
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1163941	1164147	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	24090	24296	GCA_000010485_1_1_1065	GCA_000010485_1_1_1065	+	4717338	.	PDB:2L6Q_A	Head-Tail-Connector-Protein	MVTVAELQALRQARLDLLTGKRVVSVQKDGRRIEYTAASLDELNRAINDAESVLGTTRCRRRPLGVRL*	hallmark_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0039	cloud	direct	high	206	0.995	GCA_000010485.1_01142
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1164144	1165736	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	24293	25885	GCA_000010485_1_1_1066	GCA_000010485_1_1_1066	+	4717338	.	CDD:COG5511	Major-Capsid-protein	MKRTPVLIDVNGVPLRESLSYNGGGAGFGGQMAEWLPPAQSADAALLPALRLGNARADDLVRNNGIAANAVALHKDHIVGHMFLISYRPNWRWLGMRETAAKSFVDEVEAAWSEYAEGMFGEIDVEGKRTFTEFIREGVGVHAFNGEIFVQPVWDTETTQLFRTRFKAVSPKRVDTPGHGMGNPFLRAGVEVDRYGRAVAYHICEDDFPFSGSGRWERIPRELPTGRPAMLHIFEPVEDGQTRGANQFYSVMERLKMLDSLQATQLQSAIVKAMYAATIESELDTEKAFEYIAGAPQEQKDNPLINILEKFSSWYDTNNVTLGGVKIPHLFPGDDLKLQTAQDSDNGFSALEQALLRYIAAGLGVSYEQLSRDYSKVSYSSARASANESWRYFMGRRKFIAARLATQMFSCWLEEALLRGIIRPPRARFDFYQARSAWSRAEWIGAGRMAIDGLKEVQESVMRIEAGLSTYEKELALMGEDYQDIFRQQVRESAERQKAGLSRPVWIAQAYQQQIAESRRPEEETTPRET*	hallmark_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0040	cloud	direct	high	1592	0.999	GCA_000010485.1_01143
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1165726	1167231	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	25875	27380	GCA_000010485_1_1_1067	GCA_000010485_1_1_1067	+	4717338	.	cd07022	Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.	MRRNLSHIIAAAFNEPLLLEPAYARVFFCALGREMGAASLSVPQQQVQFDALGMLAETDEYMAGGKRPARVYRVVNGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAGAFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYAGHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVDAVTGTEAAVFEGQSGIEAGLADELINASDAISVMATALNSNVRGGTMPQLTATEAAAQENQRVMGILTCQEAKGREQLATMLAGQQGMSVEQARAILAAAAPQQPVASTQSEADRIMACEEANGREQLAATLAAMPEMTVEKARPILAASPQADAGPSLRDQIMALDEAKGAEVQAEQLAACPGMTVECARAVLAAGSGKAEPVSASTTAMFEHFMANHSPAAVQGGVPQTSADGDADVKMLMAMP*	mmseqs_cdd	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0041	cloud	direct	high	1505	0.999	GCA_000010485.1_01144
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1167268	1167615	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	27417	27764	GCA_000010485_1_1_1068	GCA_000010485_1_1_1068	+	4717338	.	pfam02924	Bacteriophage lambda head decoration protein D. 	MVTKTITEQRAEVRIFAGNDPAHTATGSSGISSATPALTPLMLDEATGKLVVWDGQKAGSAVGILVLPLEGTETALTYYKSGTFATEAIHWPESVDEHKKANAFAGSALSHAALP*	mmseqs_cdd	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0042	cloud	direct	high	347	0.997	GCA_000010485.1_01145
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1167673	1168701	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	27822	28850	GCA_000010485_1_1_1069	GCA_000010485_1_1_1069	+	4717338	.	PDB:3BQW_A	Capsid-protein	MGLFTTRQLLGYTEQKVKFRALFLELFFRRTVNFHTEEVMLDKITGKTPVAAYVSPVVEGKVLRHRGGETRVLRPGYVKPKHEFNYQQAVERLPGEDPSQLNDPAYRRLRIITDNLKQEEHAIVQVEEMQAVNAVLYGKYTMEGDQFEKIEVDFGRSTKNNITQGSGKEWSKQDRDTFDPTHDIDLYCDQASGLVNIAIMDGTVWRLLNGFKLFREKLDTRRGSNSQLETAVKDLGAVVSFKGYYGDLAIVVAKMSYIAEDGIEKRYLPDGMLVLGNTAADGIRCYGAIQDAQALSEGVVASSRYPKHWLTVGDPAREFTMTQSAPLMVLPDPDEFVVVQVK*	hallmark_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0043	cloud	direct	high	1028	0.999	GCA_000010485.1_01146
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1168753	1169127	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	28902	29276	GCA_000010485_1_1_1070	GCA_000010485_1_1_1070	+	4717338	.	PFAM:PF14000.5	DNA-packaging-protein	MATKEQNLKRLDELALILGREPDISGSAAEIAQRVAEWEEEMQSSGDDVQVMNMDIRERETAAHDVREETSGALTRIRVLTCLHLCGVDGETGESVELADVGRVILIMSSDAKTHVDGGMAVYA*	hallmark_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0044	cloud	direct	high	374	0.997	GCA_000010485.1_01147
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1169120	1169473	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	29269	29622	GCA_000010485_1_1_1071	GCA_000010485_1_1_1071	+	4717338	.	CDD:pfam05354	Head-Tail-Connector-Protein	MRDFQNAFDAALAGVDSTIVEVMGISAQFTSGAQRGGEVHGVFDDPESLGFASSGIRIEGSNPSLFVLTDTVCAVRRGDTLTINGEMFWVDRVSPDDGGSCYLWLNRGQPPAASRRR*	hallmark_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0045	cloud	direct	high	353	0.997	GCA_000010485.1_01148
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1169485	1170063	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	29634	30212	GCA_000010485_1_1_1072	GCA_000010485_1_1_1072	+	4717338	.	PFAM:PF06763.10	minor-tail-protein	MAIQGLEQAVENLSRISKTAVPGASAMAINRVASSAISQSASQVARETKVRRKLVKERARLKRATVKNPQARIKVNRGDLPVIRLGNARVVLSRRRRRKKGQRSSLKGGDSVLVVGNRRIPGAFIQQLKNGRWHVMQRVAGKKRYPIDVVKIPMAVPLTTAFKQNIERIRRERLPKELGYALQHQLRMVIKR*	hallmark_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0046	shell	direct	high	578	0.998	GCA_000010485.1_01149
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1170060	1170455	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	30209	30604	GCA_000010485_1_1_1073	GCA_000010485_1_1_1073	+	4717338	.	PDB:3FZ2_G	Minor-tail-protein-	MKHTELRAAVLDALEKHDTGATLFDGRPAVFDEEDFPAVAVYLTGAEYTGEELDSDTWQAELHIEVFLPAQVPDSELDSWMESRIYPVMSDVPALSDLITSMVASGYDYRRDDDAGLWSSADLTYVITYEM*	hallmark_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0047	shell	direct	high	395	0.997	GCA_000010485.1_01150
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1170463	1171203	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	30612	31352	GCA_000010485_1_1_1074	GCA_000010485_1_1_1074	+	4717338	.	PFAM:PF16463.4	tail-tube-protein	MPVPNPVMPVKGAGTTLWVYKGNGDPYANPLSDVDWSRLAKVKDLTPGELTAESYDDSYLDDEDADWTATRQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPSMAEDRSTVTATTGMTVTPASASVVKGQSTTLTVAFQPEGATDKSFRAVSADKTKATVSVSGMTITVNGVAAGKVNIPVVSGNGEFAAVAEITVTAS*	hallmark_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0048	shell	direct	high	740	0.999	GCA_000010485.1_01151
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1171219	1171641	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	31368	31790	GCA_000010485_1_1_1075	GCA_000010485_1_1_1075	+	4717338	.	PFAM:PF06894.10	tail-assembly-chaperone	MFLKTESFEYNGVTVTLSELSALQRIEHLALMKRQAEQAESDSNRKFTVEDAIRTGAFLVAMSLWHNHPKKTQMPSMNEAVKQIEQEVLTTWPTEAISHAENVVYRLSGMYEFVVNNAPEQAEDAGPAEPVSAGKCSTVS*	hallmark_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0049	shell	direct	high	422	0.998	GCA_000010485.1_01152
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1171623	1172057	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	31772	32206	GCA_000010485_1_1_1076	GCA_000010485_1_1_1076	+	4717338	.	PFAM:PF06223.11	Minor-tail-protein-	MFDGELSFALKLAREMGRPDWRAMLAGMSSTEYADWHRFYSTHYFHDVLLDMHFSGLTYTVLSLFFSDPDMHPLDFSLLNRCEADEEPEGDVLMQKAAGLAGGVRFGPDGNEVIPASPDVADMTEDDVMLMTVSEGIAGGVRYG*	hallmark_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0050	shell	direct	high	434	0.998	GCA_000010485.1_01153
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1172050	1174611	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	32199	34760	GCA_000010485_1_1_1077	GCA_000010485_1_1_1077	+	4717338	.	TIGR01541	phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage. [Mobile and extrachromosomal element functions, Prophage functions]	MAEPVGDLVVDLSLDAARFDEQMARVRRHFSGTESDAKKTAAVVEQSMNRQALAAQKAGISVGQYKAAMRMLPAQFTDVATQLAGGQSPWLILLQQGGQVKDSFGGMIPMFRGLAGAITLPMVGATSLAVATGALAYAWYQGNSTLSDFNKTLVLSGHQSGLTADRMLVLSRAGQAAGLTFNQTSESLSALVKAGVSGEAQIVSISQSVARFSSASGVEVDKVAEAFGKLTTDPTSGLTAMARQFHNVTAEQIAYVAQLQRSGDEAGALQAANEAATKGFDDQTRRLKENMGTLETWADRTARAFKSMWDAVLDIGRPDTAQEMLIKAEAAFKKADDIWNLRKDDYFVNDEARARYWDDREKARLALEAARKKAEQQSQQDKNAQQQSDTEASRLKYTEEAQKAYERLQTPLEKYTARQEELNKALKDGKILQADYNTLMAAAKKDYEATLKKPKQSGVKVSAGDRQEDSAHAALLTLQAELRTLEKHAGANEKISQQRRDLWKAENQFAVLEEAAQRRQLSAQEKSLLAHKDETLEYKRQLAALGDKVTYQEHLNALAQQADKFAQQQRAKRAAIDAKSRGLTDRQAAREATEQRLKEEYGDNPLALNNVMSEQKKTWVAEDQLRGSWMAGLKSGWSEWEESATDSMSQVKSAATQTFDGIAQNMAAMLTGSEQNWRSFTRSVLSMMTEILLKQAMVGIVGSIGSAIGGAVGGGASASGGTAIQAAAAKFHFATGGFTGTGGKYEPAGIVHRGEFVFTKEATSRIGVGNLYRLMRGYATGGYVGTPGSMADSRSQASGTFEQNNHVVINNNGTNGQIGPQALKAVYDMARKGARDEIQAQMRDGGLLSGGGR*	mmseqs_cdd	nonviral_gene	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0051	shell	direct	high	2561	1.0	GCA_000010485.1_01154
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1174608	1174937	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	34757	35086	GCA_000010485_1_1_1078	GCA_000010485_1_1_1078	+	4717338	.	PFAM:PF05939.12	minor-tail-protein	MKTFRWKVKPGMDVTSAPSVREVRFGDGYSQRAPAGLNADLKTYSVTLSVPRWEATALESFLAEHGGWKAFLWTPPYGYRQIKVTCAKWSSQVSMLRVEFSAEFKQVVN*	hallmark_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0052	shell	direct	high	329	0.997	GCA_000010485.1_01155
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1174937	1175635	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	35086	35784	GCA_000010485_1_1_1079	GCA_000010485_1_1_1079	+	4717338	.	PFAM:PF05100.11	minor-tail-protein-	MQDIRQETLNECTRAEQSASVVLWEIDLTEVGGERYFFCNEQNEKGEPVTWQGRQYQAYPIQGSGFELNGKGTSTRPTLTVSNLYGMVTGMVEDLQSLVGGTVVRRKVYARFLDAVNFVNGNSDADPEQEVISRWRIEQCSELSAVSASFVLSTPTETDGAVFPGRIMLANTCTWTYRGDECGYHGPAVADEYDQPTSDITKDKCSKCLSGCKFRNNVGNFGGFLSINKLSQ*	hallmark_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0053	persistent	direct	high	698	0.999	GCA_000010485.1_01156
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1175785	1176384	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	35934	36533	GCA_000010485_1_1_1080	GCA_000010485_1_1_1080	+	4717338	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MSPEDWLQAEMQGEIVALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGTIHKFRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIEMPDFTREDDWWRHGQNLYLDNLEAAGLYQVPLSAAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTHSLWRHRAWHASAFTGIYNDLAAASIFV*	mmseqs_cdd	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0054	persistent	direct	high	599	0.998	GCA_000010485.1_01157
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1176381	1176953	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	36530	37102	GCA_000010485_1_1_1081	GCA_000010485_1_1_1081	+	4717338	.	PFAM:PF06805.11	tail-assembly-protein-I	MKTGAEAIRALATQLPAFRQKLNDGWYQVRIAGRDVSTSGLTAQLHETLPDGAVIHIVPRVAGAKSGGVFQIVLGAAAIAGSFFTAGATLAAWGAAIGAGGMTGILFSLGASMVLGGVAQMLAPKARTPTATSTDNGKQNTYFSSLDNMVAQGNVLPVLYGEMRVGSRVVSQEISTADEGDGGQVVVIGR*	hallmark_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0055	shell	direct	high	572	0.998	GCA_000010485.1_01158
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1177014	1177382	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	37163	37531	GCA_000010485_1_1_1082	GCA_000010485_1_1_1082	+	4717338	.	PFAM:PF13550.5	tail-protein	MGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPIEGPVDGLKSVLLNSTPVLDSEGNTNISGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITRTITSANIDRLRFTFGVCVFS*	common_virus_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0056	persistent	direct	high	368	0.997	GCA_000010485.1_01159
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1177561	1179102	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	37710	39251	GCA_000010485_1_1_1083	GCA_000010485_1_1_1083	+	4717338	.	PDB:1BCO_A	Mu-Transposase	MPTVPISMRKLKEILRLKYGVGLSHRQIGRSLAISPSVVSRYANRAAQLGIKQWPLPTGWDDTKLKHAFLQTQVKMKKHSLPDWATVHRELRNKCVTLQLLWEEYCERNPGGFYSYNHYCRMYREWLKTTSPSMRQVHKAGEKLFVDYCGPTVGVTDPETGEIRTAQVIVAVLGASSYTWAEATWSQQLEDWVMSHVRCFQWLGGVPELVVPDNLKSATSRACKYDPDVNPTYQQMLEHYNVAVLPARPRKPKDKAKAEVGVQVVERWIMARIRHEIFYSLASLNQRIRELLERLNNKIMQKLGYSRAELFIQLDKPALKPLPEASYSYTLVKKVRVHADYHVEIDKHYYSVPCSLLGQQLEAWISGELVRLFNQGQEVAVHPRKRTYGYSTRNEHMPEAHRQHATWTPERLLEWAGHIGSETHSYVLHILNSRPHPEQSYRFCLGLLNLHKKYSKARLNAACARALKTKVWRLSGIKSILEKGLDKQPVQDPKPDLLSTMEHENVRGSEYYH*	common_virus_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0057	cloud	direct	high	1541	0.999	GCA_000010485.1_01160
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1179117	1179863	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	39266	40012	GCA_000010485_1_1_1084	GCA_000010485_1_1_1084	+	4717338	.	PDB:4M4W_K	Replicative-helicase	MNHLYEQLTALKLTGFRDALKKQLAQPGTYQELGFEERLSLLTAEELTCRENRKAERLIKHARFRLNAELSKLDYRNNRGLDRALIRSLSQGNWLTLKQNILLTGATGSGKTFLACALGHNACRQGYKVYYYRLKALMEQCYQGHADGRYSKLLTRLNNSDLLLLDDWGLEPLSSEQRSDLLEIVDLMYQRGSIIVVSQLPVENWYKMIGDSTHADAILDRLVHGSIKIELKGESMRKIQSPLTEGDQ*	rep_hall_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0058	cloud	direct	high	746	0.999	GCA_000010485.1_01161
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1179963	1182998	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	40112	43147	GCA_000010485_1_1_1085	GCA_000010485_1_1_1085	+	4717338	.	PFAM:PF13550.5	tail-protein	METTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTTSQYLASVVVDNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALVGVQVDSEQFGSQQVSRNYHLRGRILQVPSNYNPQTRQYIGIWDGTFKPAYSNNMAWCLWDMLTHPRYGMGKRLGAADVDKWALYVIGQNCDQSVPDGFGGTEPRITCNAYLTTQRKAWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKVWTYNRSNVVMPEDGAPFRYSFSALKDRHNAVEVNWIDPDNGWETATELVEDTRAIARYGRNVTKMDAFGCTSRGQAHRAGLWLIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISTGGRVLAVNSQTRTLTLDREITLPSSGTTLISLVDGQGNPVSVEVQSVTDGVKVKVSRVPDGVAEYSVWGLKLPTLRQRLFRCVSIRENDDGTYAITAVQHVPAKEAIVDNGAHFDGDQSGTVNGVTPPAVQHLTAEVTADSGEYQVLARWDTPKVVKGVSFMLRLTVAADDGSERLVSTARTTETTYRFTQLALGNYRLTVRAANAWGQQGDPASVSFRIAAPAAPSRIELTPGYFQITATPHLAVYDPTVQFEFWFSEKRVADIRQVETTARYLGTALYWIAASINIKPGHDYYFYIRSVNTVGKSAFVEAVGRASDDAEGYLDFFKGQITESHLGKELLEKVELTEDNASKLEEFSKEWKDANDKWNAMWGVKIEQTEDGKHYVAGLGLSMEDTEEGKLSQFLVAANRIAFIDPANGNETPMFVAQGNQIFMNEVFLKYLTAPTITSGGNPPVFSLTPDGRLTAKNADISGNVNANSGTLNNVTINQNCRIMGKLSANQIEGDIVKTVGKAFPRNGSYASGTITVTVYDDQAFDRQIVIPPVLFRGGKHENFNSNNQQSYWYSTCKLQVLKNGQEIFQQPATDVSRVFSSVIDMPAGHGHVTLTFNVSSYGANNWTPTTSISDLLVVVMKKSTAGISIS*	hallmark_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0059	persistent	direct	high	3035	1.0	GCA_000010485.1_01162
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1183057	1184985	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	43206	45134	GCA_000010485_1_1_1086	GCA_000010485_1_1_1086	+	4717338	.	PFAM:PF06820.11	tail-fibre	MAVQISGVLKDGAGKPIQNCTIQLKAKRNSTTVVVNTVASENPDEAGRYSMDVEYGQYSVILLVEGFPPSHAGTITVYEDSKPGTLNDFLGAMTEEDVMPEALRRFEVMVEDVARNAEAASQSAAAAKKSETAAASSRNAAKTSETNAGNSAKAAASSKTAAQNAATAAERSETNARASEEASADSEEASRRNAESAAENAGVATTKAREAAADATKAGQKKDEALSAATRAEKAADRAEAAAEVTAEPYANIVPPLPDVWIPFNDSLDMIAGFSPGYKKIAIGDDVVQVASDKQVNFSRASTATYINKSGELKTAEINEPRFECDGLLIEGQRTNYMLNSESPASWGKSSNMDVPETGTDSFGFTYGKFVCNDSLVGQTSAINMASIAATKSVDVSGDNKYVTTSCRFKTERQVRLRIRFDKYDGSATTFLGDAYIDTQTLEINMTGGAAGRITARVRKDKTTGWIFAEATIQAIDGELKIGSQIQYSPEQGGATVSGDYIYLATPQVENGPCVSSFIISGGSATTRASDLVSIPTRNNLYKLPFTFLLEIHKNWDIAPNAAPRVWDIAANTGQSAIAAINRGSGKLYMSLSNPSGSYVNSAATDVFAEKTTFGCIAKADGHFHVVTNGKAVNEVYCEYNG*	hallmark_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0060	cloud	direct	high	1928	0.999	GCA_000010485.1_01163
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1185067	1185492	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	45216	45641	GCA_000010485_1_1_1087	GCA_000010485_1_1_1087	+	4717338	.	NF038385	IS66-like element accessory protein TnpA. 	MELQDWRKEPRKNYSNEFKLRMVELASQPGACVAQIARENGVNDNVIFKWLRLWQNEGRVSRRLPVTTSSDTGVELLPVEITPDEQKEPVAAIAPSLSTSTQTRVSASSCKVEFRHGNMTLENPSPELLTVLIRELTGRGR*	mmseqs_cdd	nonviral_gene	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0061	cloud	direct	high	425	0.998	GCA_000010485.1_01164
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1185489	1185839	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	45638	45988	GCA_000010485_1_1_1088	GCA_000010485_1_1_1088	+	4717338	.	NF033819	IS66 family insertion sequence element accessory protein TnpB. The IS66 family insertion sequence element encodes a DDE transposase TnpC, and two accessory proteins, TnpA and TnpB. It has been assumed that the TnpA, TnpB, and TnpC proteins are produced independently in appropriate amounts and form a complex, which acts as a transposase to promote the transposition of an IS66 family element.	MISLPSGTRIWLVAGVTDMRKSFNGLGEQVQHVLNDNPFSGHLFIFRGRRGDTVKILWADADGLCLFTKRLEEGQFIWPAVRDGKVSITRSQLAMLLDKLDWRQPKTSSRNSLTML*	mmseqs_cdd	nonviral_gene	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0062	cloud	direct	high	350	0.997	GCA_000010485.1_01165
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1185870	1187483	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	46019	47632	GCA_000010485_1_1_1089	GCA_000010485_1_1_1089	+	4717338	.	PFAM:PF03050.13	Transposase-IS66-family	MSQKYLIRIAELERLLSEQAEALRQKDQQLSLVEETEAFLRSALTRAEEKIEEDEREIEHLRAQIEKLRRMLFGTRSEKLRREVELAEALLKQREQDSDRYSGREDDPQVPRQLRQSRHRRPLPAHLPREIHRLEPEESCCPECGGELDYLGEVSAEQLELVSSALKVIRTERVKKACTKCDCIVEAPAPSRPIERGIAGPGLLARVLTGKYCEHLPLYRQSEIFARQGVELSRALLSNWVDACCQLMTPVNDALYRYVMNTRKVHTDDTPVKVLAPGQKKAKTGRIWTYVRDDRNVGSSSPPAVWFAYSPNRQGKHPEQHLRPFRGILQADAFTGYDRLFSAEREGGALTEVACWAHARRKIHDVYISSKSATAEEALKRISELYAIEDEIRGLPESERLAVRQQRSKVLLTSLHEWMVEKNGTLSKKSRLGEAFSYVLNQWDALCYYSDDGLAEADNNAAERALRAVCLGKKNFMFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRHILSVLPEWPSNRVDELLPWNVVLTNK*	common_virus_hmm	common_virus	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0063	shell	direct	high	1613	0.999	GCA_000010485.1_01166
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1187651	1187929	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	47800	48078	GCA_000010485_1_1_1090	GCA_000010485_1_1_1090	+	4717338	.	.	hypothetical protein	MKDLTLKFHDKLQFKAFLSSLGWAEDEDLQNKLLVDEIGFTYTETGVTEEGEPVCIRNDGYFVNIRILDDLFDVSVFSDYVVELETPLREWS*	.	hypothetical_protein	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0064	cloud	direct	high	278	0.996	GCA_000010485.1_01167
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1187942	1188235	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	48091	48384	GCA_000010485_1_1_1091	GCA_000010485_1_1_1091	+	4717338	.	.	hypothetical protein	MDISPLLHALCAVAAQILVGLFTGNWAYGAIAGCTFFIAREHTQAEYRWIEMFGHGKRMNMPWWGGFDPRAWDVASLMDFAVPVVACLLVWLLVNRG*	.	hypothetical_protein	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0065	cloud	direct	high	293	0.997	GCA_000010485.1_01168
GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote	cenote	CDS	1188327	1189184	GCA_000010485.1	AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485.1_AP009378.1	GCA_000010485.1|AP009378.1	GCA_000010485_1_1	GCA_000010485_1_1@C43	48476	49333	GCA_000010485_1_1_1092	GCA_000010485_1_1_1092	-	4717338	.	COG1108	ABC-type Mn2+/Zn2+ transport system, permease component [Inorganic ion transport and metabolism]. 	MMALLLEPLQFTFMSHALLISLVVSIPCALLSVFLVLKGWALMGDAMSHAVFPGIVLAWILGLPLATGAFVAGVFCAVATGYLKDNSRIKQDTVMGIVFSGMFAAGLILYIAVKPDVHLDHILFGDMLGITIGDIIQTMIIAGLVTLVISVKWRDFLLFSFDYQQAQVSGLHTRWLHYGLLCMVSLTIVATLKAVGIILSISLLIAPGAIAVLLTQRFHIALLLATGISVIVSMTGVWLSFFIDSAPAPTIVVLFAVLFIMTFAVTSINARKKGNSHTQDLLSPN*	mmseqs_cdd	nonviral_gene	C43	49333	1139852	1189185	GCA_000010485.1|AP009378.1@region_1139853_1189185@tool_cenote_CDS_0066	cloud	direct	high	857	0.999	GCA_000010485.1_01169