core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1498836	1499042	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	1	207	GCA_000027305_1_1_1430	GCA_000027305_1_1_1430	-	1830138	.	.	hypothetical protein	MLTQIARNRGVPFEILVEKVIEKSAQFAVVIGIIIGQRQAFEDRLLTFNPPEELTALEQEIEQWQFPT*	.	hypothetical_protein	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0001	shell	direct	high	206	0.995	GCA_000027305.1_01495
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1499075	1499623	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	240	788	GCA_000027305_1_1_1431	GCA_000027305_1_1_1431	-	1830138	.	pfam03406	Phage tail fibre repeat. This repeat is found in the tail fibers of phage. For example protein K. The repeats are about 40 residues long.	MKAFLHHLQNEAKLIISLTYCVDGEFALNEIARATLQQYGIVQLSSATNSDSETEAATSKAVKTAYDKAVEAKTTADGKVGLNGNESINGEKTFENRIVAKRNIRISDSPHYASRGDYLNIGANNGDCWFEYKLSNQEIGTLRMHANGDLTYKRQKIYLKMDCWQAIHKRKLKVFTAKRKKR*	mmseqs_cdd	common_virus	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0002	shell	direct	moderate	510	0.929	GCA_000027305.1_01496
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1500121	1501221	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	1286	2386	GCA_000027305_1_1_1432	GCA_000027305_1_1_1432	-	1830138	.	PFAM:PF09979.8	head-maturation-protease	MKFTDKTTQADTQRTITKDGFLVVPATISKVGVFDYLATELGLKEDGIKKVARTEKSLFSDETIKSFENATLTVGHLKDGVNAKNWKQLSVGVVRNVKRVGDELTAEAWIYDEQAIKTVQEHGVEQLSCGYDCDIKPSTVQDADFEMSPMIGNHVAIVAKGRCGGSVKLADEDKTIMGKTAKILDAFLGAFGIKLSDEQKKQIEDEEKSGSEEGKEPKGEQPTKPKEKKSEPENKKEDDVEKEELEKSLKAKDEEIQQLKDAQAKRDAEVKQAAVLADAKTAFKEVNFADNATVREIQESAVVAQGIFTKDEAAKLSDEEISGAYQTAKVVVAKLADERKSLGNILLGDAEPKAAPKIDFNKTYNS*	phrogs_hmm	nonviral_gene	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0003	shell	direct	high	1100	0.999	GCA_000027305.1_01498
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1501282	1501638	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	2447	2803	GCA_000027305_1_1_1433	GCA_000027305_1_1_1433	-	1830138	.	pfam10711	Hypothetical protein (DUF2513). This family is found in bacteria. The function is not known.	MKRNWDLIRSILLKLESQSEARGSLLPDGFTGFDSETVSYHFKLLQSAGLIEAIDYSSLNEMSLIARLLTWQGHELLDKIRNDTVWNSLKTTIKSKSLDLSLDAIKQVAQTIISQMLA*	mmseqs_cdd	nonviral_gene	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0004	cloud	direct	high	356	0.997	GCA_000027305.1_01499
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1501886	1502059	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	3051	3224	GCA_000027305_1_1_1434	GCA_000027305_1_1_1434	-	1830138	.	.	hypothetical protein	MANLKVGGKKNLATTSRGLQNGKQDSSLIHVRHLTKSEIQSLRESKRNAYHQMMALN*	.	hypothetical_protein	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0005	.	unmatched_CDS	none	0	0	.
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1502126	1503346	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	3291	4511	GCA_000027305_1_1_1435	GCA_000027305_1_1_1435	-	1830138	.	PFAM:PF04233.13	Minor-capsid-component	MMTNDVERALQQPQGSFFMDDAKGFQAISAKALMKVLEKYEKSDRTSQAENIANGFVSRGDAQNHAEVSTNLKNQTGIDLSAYLRNSPNITEKVNALTAGNIQLIKSIRSQYLDKVQNAVMQAMVRGSLNKDLAAQIKDLGKTTEKRAMFIARDQSSKLNAALTQARHEEVGIKKYMWSASLDERVRESHAEKDGQIFEYANPPADTDHPGHDFNCRCVQIPVLDNNEQIVKNSPIVSQQEKQQMRSEWSDDFPDTIIDRKLGDATSHPLYENAKKGSIEDAYQLAKDLVTDDAVNKLKQLVGNKNAILIPVHAEEAVGQNMIPVAIATVLSKKLHIPVDLSIVQATKVSRTGGDGWHRLVYSPAFDGIVPKDKYAIILDDTQTQGGTLASLKGYIIKEKLLHLML*	hallmark_hmm	common_virus	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0006	shell	direct	high	1220	0.999	GCA_000027305.1_01500
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1503393	1504703	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	4558	5868	GCA_000027305_1_1_1436	GCA_000027305_1_1_1436	-	1830138	.	PDB:8HDS_J	Portal-Protein	MNILDGIKSLALKLGSKQDQTYYARGLSLTDDLMQIEALWRDNWIANKVCIKRSEDMVRNWRDIFSNDLKSEQLDEFTKLERRLKLRETLTKALQWSSLYGAVGLLVVTDTINITSPLQPTERLKRLIILPKWKISPTGQRDDDVFSPNFGRYSEYTITGGTQSVSVHHSRLLIINANDAPLSDNDIWGVSDLEKIIDVLKRFDSASANVGDLIFESKIDIFKIAGLSDKISAGLENDVAHVISAVQSIKSATNSLLLDAENEYDRKELSFGGLKDLLTEFRNAVAGAADMPVTILFGQSVSGLASGDEDIQNYHESIHRLQETRLRPVLEVLDTLLCNELFGGQPDDWWFEFLPLTVVKQEQQVNMLNTFATAANTLIQNGVVNEYQVANELRESGLFANISADDIEEMKNANELARNFEEPEGESTQVQASEDE*	hallmark_hmm	common_virus	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0007	shell	direct	high	1310	0.999	GCA_000027305.1_01501
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1504705	1505889	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	5870	7054	GCA_000027305_1_1_1437	GCA_000027305_1_1_1437	-	1830138	.	PDB:4IDH_A	Large-Terminase	MFREIQKSISDSVIQMLADQIEMLSLQAFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGIDVVWVEEGENVSKESWDILIPTIREDGSQIIVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFPKELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIEYAVDAHLKLGFTAKGMKKVGFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANRTNQSAVKFKADLIIFDSIGVGAGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKGKKNQDMFSNIKAQSWWALRDRFYKTYRAVKYGDVYPDDELISLSSKIKELEYLKAELSRPRVDYDNNGRVKVESKKDMKKRGIPSPNMADALVMCYAPTKPKSLLDL*	hallmark_hmm	common_virus	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0008	shell	direct	high	1184	0.999	GCA_000027305.1_01502
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1506034	1506549	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	7199	7714	GCA_000027305_1_1_1438	GCA_000027305_1_1_1438	-	1830138	.	PFAM:PF03592.15	Terminase-small-subunit	MSDVKGKSTSGRGLTPKQEKFCQLYIELGNASEAYRQSYDCSKMTTEVINVKASELLNKNGKITVRVEELRQAHQQRHNLTLDNIIADLQEYRDICMGRKPLTITTVVKNAQEGTAQSVNTECFVFEPTGANKALELLGKHLGMFTNKVDVTTDGKPLPTVINVTFSDEPA*	hallmark_hmm	common_virus	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0009	shell	direct	high	515	0.998	GCA_000027305.1_01503
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1506559	1507080	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	7724	8245	GCA_000027305_1_1_1439	GCA_000027305_1_1_1439	-	1830138	.	TIGR02681	phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein. [Mobile and extrachromosomal element functions, Prophage functions]	MNLQTIENFEQFLKVNDKQRIVTNSRHIATVFGKRHDNIIRDIKALVIEQDCGEFALLNFEETSYFDEWGRKQPMYQMTKNGFLLLVMGYRTQKAMKFKVEFIKAFDFMREKLQQEGYSLMHKYNELCIEHKAKKAFASLCGKGLREWKGDKPVLEATLKLFEDKMQIELPIK*	mmseqs_cdd	nonviral_gene	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0010	cloud	direct	high	521	0.998	GCA_000027305.1_01504
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1507208	1507450	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	8373	8615	GCA_000027305_1_1_1440	GCA_000027305_1_1_1440	-	1830138	.	PDB:5CYB_A	Lipoprotein	MLTLVCLSLFLTACTNKITTKPEYIYPPQAYTAPCVKTAFTGETYGDVVIQLVKVTAERDKCASQVDHLNKWINQAKGGK*	common_virus_hmm	common_virus	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0011	cloud	ambiguous	low	49	0.202	GCA_000027305.1_01505
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1507401	1507676	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	8566	8841	GCA_000027305_1_1_1441	GCA_000027305_1_1_1441	-	1830138	.	pfam10828	Protein of unknown function (DUF2570). This is a family of proteins with unknown function.	MTKYIYIALVGVVVVLFGALRYQSSVIDELEITTKQQEDTNKSLSLALQQERNDEIERIATENAESVKTIIKTQPCAHTRLPQSVLDRLHE*	mmseqs_cdd	nonviral_gene	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0012	cloud	direct	high	275	0.996	GCA_000027305.1_01505
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1507669	1508271	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	8834	9436	GCA_000027305_1_1_1442	GCA_000027305_1_1_1442	-	1830138	.	PDB:3WH1_A	Chitinase-	MTMMISEVTFNKIFPHAVKGVYQAISAQIEKAGCVNKMQQAMFLAQCGHESGGFIRFKENLNYSWLGLSQTFRKYFPDPLTAKKYERKPELIANRIYANRLGNGDEKSGDGWKYRGRGLIQITGKDNYAAFRKWLGRDIEPEDVAGNLDLSVKTAVWYWKCYELAELNSVEKVTRRINGGLNGIDERCKLYRALMVTDND*	common_virus_hmm	common_virus	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0013	shell	direct	high	602	0.998	GCA_000027305.1_01506
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1508240	1508596	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	9405	9761	GCA_000027305_1_1_1443	GCA_000027305_1_1_1443	-	1830138	.	TIGR01594	phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda. [Mobile and extrachromosomal element functions, Prophage functions]	MPIKEPDVWALIWSWLQTNLSSSSAQSAFWALFISLLRFGFMRKKPAIRYVLIDAAMCASIAGVAVPICTHLFGHTEYSSFLGTMIGFVGTEKIREFLFKFINRRIEKDDNDDFRSDI*	mmseqs_cdd	nonviral_gene	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0014	shell	direct	high	356	0.997	GCA_000027305.1_01507
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1509034	1509600	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	10199	10765	GCA_000027305_1_1_1444	GCA_000027305_1_1_1444	-	1830138	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MKNQIQFSTFNFKDLPVRVILDPKGEFWFCGTDVCHILGYTNSRKALQDHCKQGGVTKRYTPTKSADQEMTFINEPNLYRLIIKSRKPEAEPFEAWVFEEVLPQIRKTGKYQLQPQQLALPEPEKKFSFEFTEYELQQLVWLWFAFMRGIVTFQHIEKAFKALGSNMSGDIYGQAYEYLSVYAQQTKS*	common_virus_hmm	common_virus	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0015	shell	direct	high	566	0.998	GCA_000027305.1_01509
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1509961	1510260	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	11126	11425	GCA_000027305_1_1_1445	GCA_000027305_1_1_1445	+	1830138	.	TIGR02683	putative addiction module killer protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the upstream member of a gene pair, where the downstream member is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, often are located with prophage regions, but also in both integrated plasmid regions and near housekeeping genes. Analysis suggests that the gene pair may serve as an addiction module.	MTIQIKTTLTFDSWLSKLKNLRAKAKINARIKRLQFGNFGDIKSVNDGIFELRIDEGQGYRVYLKNQNGVLVILLCGGDKSTQDKDIKQAKLLAQELGL*	mmseqs_cdd	nonviral_gene	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0016	shell	direct	high	299	0.997	GCA_000027305.1_01511
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1510257	1510550	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	11422	11715	GCA_000027305_1_1_1446	GCA_000027305_1_1_1446	+	1830138	.	COG3636	DNA-binding prophage protein  [Mobilome: prophages, transposons]. 	MTEQLKDFDVAEHLTSEEEIQLYLNEILQEDNIELILSALGDIARARNMSQIARDAGISREGLYKALSGTGNPTFATVMKVMKALNLQFQVQQSRFA*	mmseqs_cdd	nonviral_gene	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0017	shell	direct	high	293	0.997	GCA_000027305.1_01512
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1510581	1510859	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	11746	12024	GCA_000027305_1_1_1447	GCA_000027305_1_1_1447	-	1830138	.	PFAM:PF06530.11	anti-termination-protein-Q-like	MKCDARYAEKYRMRPISDELGMEIDGYLGVIRKVTPELYDVFVLTYIKRWEKQGIWRYLHISRREYFNRLKTVKTSLLLLLSTEGKQYLFIA*	phrogs_hmm	hypothetical_protein	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0018	shell	direct	high	278	0.996	GCA_000027305.1_01513
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1511012	1511587	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	12177	12752	GCA_000027305_1_1_1448	GCA_000027305_1_1_1448	+	1830138	.	COG3561	Phage anti-repressor protein  [Mobilome: prophages, transposons]. 	MTHLNLIPVFNGLIQNQPVQLCNARELHAFVESKQQYTDWIKNRINEYGFIQDEDYLVITERTNGRPRKEYHITLDMGKELGMVERNERGRQIRQYFIRCERTLKALQQPQQLALPEPEKFTHEFTEFEIETLVWLLIGHHQMNTLLGQLEKPLDAIGSNLHPAVYSYWKEYGRQYKDALPTIKRLMAPFK*	mmseqs_cdd	common_virus	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0019	cloud	direct	high	575	0.998	GCA_000027305.1_01514
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1511712	1511831	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	12877	12996	GCA_000027305_1_1_1449	GCA_000027305_1_1_1449	+	1830138	.	.	hypothetical protein	MNKLIITLVCAFVVYMVHALNLNQDCDGKICHTEQTQQY*	.	hypothetical_protein	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0020	shell	direct	high	119	0.992	GCA_000027305.1_01515
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1511873	1512157	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	13038	13322	GCA_000027305_1_1_1450	GCA_000027305_1_1_1450	+	1830138	.	.	hypothetical protein	MESIKLSQKAEEEIVNAARMAALSNLTEKSQNLITLEDIAIYFGRHYQTVAKIISKLPNFPKPVTPVTVDQQNSRPRYIAGEVVRWGRINAKPY*	.	hypothetical_protein	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0021	shell	direct	high	284	0.996	GCA_000027305.1_01516
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1512158	1513072	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	13323	14237	GCA_000027305_1_1_1451	GCA_000027305_1_1_1451	-	1830138	.	PDB:1Z19_B	Integrase	MHRLRQCNMKWGAEEEKKIELQAQGLQPDTLFSDVIKRYLNKITPTKRGEKHEFNRLNRFLRHPVTDKYISDVSRRDIEDWIAERLESVKSESVRRELSTIGHIFKIALERWGYIQKSPMVGIQLPEKGKPRTQRVTEENINAIVAISEYVDTLKTAKARTAAAILFAVETAMRAGKICSLSWGNVNFEKRTAFLPMTKNGTSRTVPLTKNAIAILERLKVEIGDAGLCFDIKSSVLDATFRKLKKLAEREYLHFHDTRREALTRLSKKVDVMTLAKISGHKDISILQNVYYAPDMAEVAELLD*	common_virus_hmm	common_virus	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0022	shell	direct	high	914	0.999	GCA_000027305.1_01517
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1513395	1513487	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	14560	14652	GCA_000027305_1_1_1452	GCA_000027305_1_1_1452	-	1830138	.	.	hypothetical protein	MAAEKLTKKRLAQILIMLCILIIAFVWRYF*	.	hypothetical_protein	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0023	shell	direct	moderate	92	0.989	GCA_000027305.1_01519
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	CDS	1513584	1514357	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	14749	15522	GCA_000027305_1_1_1453	GCA_000027305_1_1_1453	+	1830138	.	PRK11161	fumarate/nitrate reduction transcriptional regulator Fnr. 	MKNFVAGAQSGRKIQSGGCAIHCQDCSISQLCIPFTLNEQELDQLDNIIERKKPIQKSQVLFKAGDSLNSIYAIRSGTIKSYTISESGEEQITSFHLPGDLVGFDAITQMQHPSFAQALETAMVCEIPFDILDDLAGKMPKLRQQILRLMSSEIKSDQEMILLLSKMNAEERLAAFIHNLSKRYSARGFSAREFRLTMTRGDIGNYLGLTVETISRLLGRFQKLGVISVQGKYITINDLNGLIELTGTNKTKITLVK*	mmseqs_cdd	nonviral_gene	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_CDS_0024	persistent	direct	high	773	0.999	GCA_000027305.1_01520
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1558773	1559372	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	1	600	GCA_000027305_1_1_1512	GCA_000027305_1_1_1512	-	1830138	.	COG3842	ABC-type Fe3+/spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]. 	MLIVQNLQTNILKSISFSIEKSECLSVVGESGSGKTTLLNAIAGYIDYSGSILWNNQVLENNPPWKRNFRYLNQRLYLFPHKTVRGNLILANPSASDAEQQILLSELKIDHLINRYPHQLSGGEQQRVALARALIYRPDLLLLDEPFSSLDWSSRKDIWKVLKNLIQTNEITTILVTHEPKEAEYFSGKQIQLYQGQLI*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0001	shell	direct	high	599	0.998	GCA_000027305.1_01578
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1559374	1559721	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	602	949	GCA_000027305_1_1_1513	GCA_000027305_1_1_1513	-	1830138	.	TIGR01581	NifC-like ABC-type porter. This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.	MRSTRGIFSSFESGYRFASYTLELSPFKTLIKIEIPMCWKPLVCASVLAWSRAIGEFGATLMLAGATRFKTETLPMAVYLNISSGDFEIAIGASLWLLFISSCLLLVLRMINRAV*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0002	shell	direct	high	347	0.997	GCA_000027305.1_01579
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1559961	1560680	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	1189	1908	GCA_000027305_1_1_1514	GCA_000027305_1_1_1514	-	1830138	.	PDB:2FJR_A	Repressor-protein-CI	MQYQNQDNFPERIEYLVDKLNGPSEFARKTGVTLSTITRWRKGEADPSRSNLVKIAEVTGVSIEWLATGKIKEEKTTEEKPAGSLVSRAFERMQAMLEEGVSMIDSYSSINVSAGFGSFNEGITQPDGQEPYSDELLTSLGVKADNCAVFWANGNSMLPTINNYDQMLVDLSRKEIQGDRIYLVQNGESVWVKRVKMEWDGISLISDNKEEYPPISITGENAQNLQIIGQVVHIGHSLI*	common_virus_hmm	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0003	cloud	direct	high	719	0.999	GCA_000027305.1_01580
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1560908	1561177	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	2136	2405	GCA_000027305_1_1_1515	GCA_000027305_1_1_1515	+	1830138	.	COG3423	Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription]. 	MSVLEKPKKTAEQDWHRADILAELKKNGWSLRSLAKEGQVSYNTLKTVLDKSYPKMERLVANAIGVPPEVIWAGRFAERNKRPTLQHKY*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0004	cloud	direct	high	269	0.996	GCA_000027305.1_01581
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1561211	1563274	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	2439	4502	GCA_000027305_1_1_1516	GCA_000027305_1_1_1516	+	1830138	.	PDB:1BCO_A	Mu-Transposase	MDNQSLKTHYSVYELANLKLKTLPSAPKNIWEQAKRENWKSQKRQGRGGGLEYELASLPIEVQNELLLKTTPEQTAVALQKIEETRPLASNEVWQLWDEASAKAQEQAKIKLGTMFAVANLVESGVNVLDAFRLVCGKENAERLKNNEKLLSVGSLKNWWYRVKDAPRQDWLPLMLNNSGKSSKNVAEIDEAAWQFFKNFYYSREKPSLAHSYEVLKQAAQYNGWRIPSRSSLKRKMERDVPKTEEVFRREGQYALSRLYPSQVRTVAMLQAMEWINGDGYQHNVWVRFPDGEIKRPKTWLWQDVRTRKVLAARTDKSENTDTIRLSLLDVISRYGLPKHLTIDNTRAAANKKMTGGVKNRYRYQVNENEVQGIIPALGIELHWTSIQFGKGRGQAKPIERAFSHGGLGDYVDKHLLLRGAYAGANAYEKPDYDGKNGAEQPVDYATFLMALEQGIQQWNNVGNRLTEICAGKSSYAEAFERDWAVAEKRPISQSQMRLLLTLHEEVRLNQDGTFYLNAGKIGTNKNRYESLALIGTSHKRVVVRYDPANLHDKVWVYAXTGEYLAEAEITEKAGFGDQMAGREHNKAMRNWVKHTEKAAKERAKAEEMELSNYAPAVEFEERFLEMLPEPVKAPQTQAEEVEYEEVLDFNTVRKVPKAVEVEAEEISEFNRDWEKGLELLKKSKGR*	common_virus_hmm	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0005	cloud	direct	high	2063	1.0	GCA_000027305.1_01582
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1563331	1563603	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	4559	4831	GCA_000027305_1_1_1517	GCA_000027305_1_1_1517	+	1830138	.	pfam09039	Mu DNA binding, I gamma subdomain. Members of this family are responsible for binding the DNA attachment sites at each end of the Mu genome. They adopt a secondary structure comprising a four helix bundle tightly packed around a hydrophobic core consisting of aliphatic and aromatic amino acid residues. Helices 1 and 2 are oriented antiparallel to each other. Helix 3 crosses helices 1 and 2 at angles of 60 and 120 degrees, respectively. Excluding the C-terminal helix 4, the fold of the I-gamma subdomain is remarkably similar to that of the homeodomain family of helix-turn-helix DNA-binding proteins, although their amino acid sequences are completely unrelated.	MSNITLNENAMLYLKADYYRPEMPTFKACYFRLSKIAQEQGWGTLPNLAQTKALFKAAVPEIIWTREAFKRANTQKKHAHKATPYLEQVM*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0006	cloud	direct	high	272	0.996	GCA_000027305.1_01583
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1563536	1564006	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	4764	5234	GCA_000027305_1_1_1518	GCA_000027305_1_1_1518	-	1830138	.	1MW5_A	HYPOTHETICAL PROTEIN HI1480	MSETDLLLKMVRQPVKLYSVATLFHEFSEVITKLEHSVQKEPTSLLSEENWHKQFLKFAQALPAHGSASWLNLDDALQAVVGNSRSAFLHQLIAKLKSRHLQVLELNKIGSEPLDLSNLPAPFYVLLPESFAARITLLVQDKALPYVRVSFEYWHA*	hhsuite_tools	hypothetical_protein	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0007	cloud	direct	high	470	0.998	GCA_000027305.1_01584
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1564040	1564903	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	5268	6131	GCA_000027305_1_1_1519	GCA_000027305_1_1_1519	+	1830138	.	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase  [Mobilome: prophages, transposons]. 	MTLINKLKQHLSDSQITQAQLAREAGVNAGALSAYLNDNYKGNIADVEAKLAAYLEKKAVQAREFVEAPAFIETATSRQIFKTLEFAQIANCLATVYGMSGVGKTKAIQEFAKSHANVWLVTASPSRSSLSEILYEIALELGISDAPRRKGTLSRLIARKIKGTEGLLIVDEADHLPYEALEELRIMQEEAGIGLVLVGNDKVYTRMKGGISPSHEYARLWSRVAKNTSIQKTKKADTQAVAQAWGLETDEEALKVMQSITETGGGLRILTQTYACRNGSKRIWQVD*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0008	cloud	direct	high	863	0.999	GCA_000027305.1_01585
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1564964	1565281	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	6192	6509	GCA_000027305_1_1_1520	GCA_000027305_1_1_1520	+	1830138	.	.	hypothetical protein	MQKVYNKMAGEMMSPRNAVIHNQLAMLELATLECEALGIEVETVEWFDIGKPRLVVKDCSALRHLIKTGKAFNYGSEVKNGIRIYLNQMMVKGVKFIWKSDVTKH*	.	hypothetical_protein	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0009	cloud	direct	high	317	0.997	GCA_000027305.1_01586
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1565296	1565805	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	6524	7033	GCA_000027305_1_1_1521	GCA_000027305_1_1_1521	+	1830138	.	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam  [Mobilome: prophages, transposons]. 	MATKVKSQAKLRFVSVEQVQSAIKEIGDLSREHTRLATEMNDKIGATSEHYAPKLKALKEEIEPLQKAVQEYCEANRDELTEFGKTKTANFVTGEVQWRQRPPSVAIRGAEAVMEFLQRMGFDRFIRTRQEINKEALLNEPEVAKGIAGVTIKQGLEDFVIKPFEQDAR*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0010	cloud	direct	high	509	0.998	GCA_000027305.1_01587
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1565802	1565963	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	7030	7191	GCA_000027305_1_1_1522	GCA_000027305_1_1_1522	+	1830138	.	6V7U_A	Quorum sensing anti-activator protein, Aqs1	MMDDLQDVSRLREAYQFYQKAKQDEDSIVCGCLNDAYEWLFSELKALFDEEEE*	hhsuite_tools	hypothetical_protein	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0011	cloud	direct	high	161	0.994	GCA_000027305.1_01588
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1565963	1566232	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	7191	7460	GCA_000027305_1_1_1523	GCA_000027305_1_1_1523	+	1830138	.	.	hypothetical protein	MKLKQKLLTFPNVCLLLLVICSTLGLALVWFIPFVGQALIWNSLVFLCWVVYFEVRGLKDWGEHNLEQLVKMAEVSAAAAYKISSMVAK*	.	hypothetical_protein	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0012	cloud	direct	high	269	0.996	GCA_000027305.1_01589
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1566435	1566656	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	7663	7884	GCA_000027305_1_1_1524	GCA_000027305_1_1_1524	+	1830138	.	NF033650	ANR family transcriptional regulator. ANR family transcriptional regulators include the AggR-activated regulator Aar. The name ANR (AraC Negative Regulators) refers to an effect on, rather than homology to, certain AraC family transcriptional regulators.	MKTKRPHAKSVENFNRYRFYAEKAAKEEQAGNYEEAETHWDLAMLSASPENKEWAIRRRDFCQRMHQRPFEGE*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0013	cloud	direct	high	221	0.995	GCA_000027305.1_01590
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1566656	1566829	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	7884	8057	GCA_000027305_1_1_1525	GCA_000027305_1_1_1525	+	1830138	.	.	hypothetical protein	MMTETRKNELENQLNQMIVMLKEAQKSLFKGQYTHAAIFVGNVSDQLPNMRMMLARG*	.	hypothetical_protein	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0014	cloud	direct	high	173	0.994	GCA_000027305.1_01591
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1566832	1567392	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	8060	8620	GCA_000027305_1_1_1526	GCA_000027305_1_1_1526	+	1830138	.	pfam17457	Family of unknown function (DUF5420). This is a domain of unknown function found in Gammaproteobacteria such as Haemophilus influenzae.	MNAIQFRYFKGVMTKEPLKTIIDTWYKLRAERDKKLTNIFNTIPFYESWLGDETSIFGIVCSYDNPARDEAVLTKGYRTEDYKGKCVVKPDRRYKVGKDFDKKLQAIRQILKEAPDFSSYSLKELGMYLLVGNFSRLYFSVSGVQDDIYIAKIPVKEQGNFGDDFLEIHECLTEIKESEFLSIQGL*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0015	cloud	direct	high	560	0.998	GCA_000027305.1_01592
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1567566	1568123	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	8794	9351	GCA_000027305_1_1_1527	GCA_000027305_1_1_1527	+	1830138	.	COG4382	Mu-like prophage protein gp16  [Mobilome: prophages, transposons]. 	MSEKAKLIQLIHIGKQQLNMDEFSYREMVKRLTNKTSSTKCTVVELLKILHEMQQKGAKVKHFAKRGTKPTAYSPATGEVKVKSEIAHKIRAVWIQMGKHGFLADPSXKALNSYMRKVMNKGKSVLALNVGALNSNDASRFLEILKKWHKRVMLKRLAEKYGCITSAETGYDELCLVFKNYQGVA*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0016	cloud	direct	high	557	0.998	GCA_000027305.1_01593
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1568120	1568674	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	9348	9902	GCA_000027305_1_1_1528	GCA_000027305_1_1_1528	+	1830138	.	.	hypothetical protein	MKLCRCPICHSDIHLEALIEDDAGRELLGKISQLTHGCAQPMVGYLGLFKPAKSNLNNARALKILSEVLDLYPCSLLLAQALSETVASLRKKRQQALQTGQKIEPLTNHNYLKSVYETQKPHFAVIRSGKNQSETVKAQQAEDKKVQDAILYVERFVQLGQEEFVKNSPEYQIWLNHKAQKQAL*	.	hypothetical_protein	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0017	cloud	direct	high	554	0.998	GCA_000027305.1_01594
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1568866	1569081	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	10094	10309	GCA_000027305_1_1_1529	GCA_000027305_1_1_1529	+	1830138	.	PFAM:PF08765.10	late-transcriptional-activator	MSQTLQQTGLFDDEHADIGALFDHLDQIPSVELEKRWPSLLVEVIEVMQAEYCAKILQKIKQKRPLRSSWA*	phrogs_hmm	hypothetical_protein	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0018	.	unmatched_CDS	none	0	0	.
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1569081	1569299	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	10309	10527	GCA_000027305_1_1_1530	GCA_000027305_1_1_1530	+	1830138	.	COG5566	Transcriptional regulator, Middle operon regulator (Mor) family [Transcription]. 	MAHYFGGKSFYLPAGDKIKEALRDAQIYQEFNGKNVPDLIKKYRLSESTIYAILRNQRTLQRKRHQMDFNFS*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0019	.	unmatched_CDS	none	0	0	.
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1569308	1569814	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	10536	11042	GCA_000027305_1_1_1531	GCA_000027305_1_1_1531	+	1830138	.	.	hypothetical protein	MKLLKALAVLSLATISSHSFAVDGFQNVKFGASKTEVRNAYQKCQWQKDEYDLFCPNFTLGAIKDTGAYFYFIDDKFERIAINIPNVNIDGIGQALSEKYTLSSQPTQRELANPKPNNVYDFGFDKDTILIRYTYDNDMTEEIFLIYTTPDFNNKLQTKDAQSVKDQL*	.	hypothetical_protein	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0020	cloud	direct	high	506	0.998	GCA_000027305.1_01595
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1569896	1570180	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	11124	11408	GCA_000027305_1_1_1532	GCA_000027305_1_1_1532	+	1830138	.	PFAM:PF01510.24	amidase	MSLPITKIVVHCSATRNGKSIKQPGKNAAQVIDGWHKQRGFKRQLSSQRAFNPHLSSIVITLSLMWTAQSEPVAKWAKLVHTLRGTTKIQWGFA*	phrogs_hmm	hypothetical_protein	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0021	cloud	direct	high	284	0.996	GCA_000027305.1_01596
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1570120	1570440	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	11348	11668	GCA_000027305_1_1_1533	GCA_000027305_1_1_1533	+	1830138	.	PDB:1M0D_D	endodeoxyribonuclease-I	MGEIGAHVKGHNQNSVGICLVGGITASGKNHGEYTEAQWQSLYKLLQELEAEHPKALICGHRDLSPDLNGDGVITPKEWLKDCPCFDVWSWLDSEQVVNLDHLYKE*	common_virus_hmm	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0022	cloud	ambiguous	low	62	0.193	GCA_000027305.1_01596
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1570447	1570707	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	11675	11935	GCA_000027305_1_1_1534	GCA_000027305_1_1_1534	+	1830138	.	pfam10841	Protein of unknown function (DUF2644). This family of proteins with unknown function appear to be restricted to Pasteurellaceae.	MGFSELFTNADGRLSTTASIQFWGFVAATGVLLYSVYLDKPYVPEMFSTFLFACVGTAATKGVANALSQRREQGKEQGREQGREQE*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0023	cloud	direct	high	260	0.996	GCA_000027305.1_01597
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1570704	1570958	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	11932	12186	GCA_000027305_1_1_1535	GCA_000027305_1_1_1535	+	1830138	.	pfam10883	Protein of unknown function (DUF2681). This family of proteins is found in bacteria. Proteins in this family are typically between 81 and 117 amino acids in length.	MMNLILAFSGVIALYGGYLYLRLRQSQKQAATLQKEKEQLQTQKTVAETKVKNYQVKQKNEENLISRSRTSLLERMHNDGDLRD*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0024	cloud	direct	high	254	0.996	GCA_000027305.1_01598
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1570939	1571076	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	12167	12304	GCA_000027305_1_1_1536	GCA_000027305_1_1_1536	+	1830138	.	.	hypothetical protein	MATSVINPSCAGFSLIKASRQDTTETLRQVAVHNATYRQICEEQP*	.	hypothetical_protein	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0025	cloud	ambiguous	low	21	0.152	GCA_000027305.1_01598
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1571076	1571303	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	12304	12531	GCA_000027305_1_1_1537	GCA_000027305_1_1_1537	+	1830138	.	TIGR02419	phage/conjugal plasmid C-4 type zinc finger protein, TraR family. Members of this family are putative C4-type zinc finger proteins found almost exclusively in prophage regions, actual phage, or conjugal transfer regions of the Proteobactia. This small protein (about 70 amino acids) appears homologous to but is smaller than DksA (DnaK suppressor protein), found to be critical for regulating transcription of ribosomal RNA. [Mobile and extrachromosomal element functions, Prophage functions]	MADVLDQLNEREEALLQNILAPHLDTELSDDEVDAIAEAGRQCSECGLPIPTTRLRANPFAHRCVSCQQDWEEGR*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0026	cloud	direct	high	227	0.996	GCA_000027305.1_01599
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1571300	1571629	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	12528	12857	GCA_000027305_1_1_1538	GCA_000027305_1_1_1538	+	1830138	.	pfam10805	Protein of unknown function (DUF2730). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	MISEFWEFVRSNFGVISTLIAIFIGAFWLKLDSKYAKKHDLSQLADIARSHDNRLATLESKVENLPTAVDVERLKTLLTDVKGDTKATSRQVDAMSHQVGLLLEAKLKE*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0027	cloud	direct	high	329	0.997	GCA_000027305.1_01600
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1571634	1571942	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	12862	13170	GCA_000027305_1_1_1539	GCA_000027305_1_1_1539	+	1830138	.	4LMY_B	Peroxide stress regulator PerR, FUR	MSFKELITQDQRLVVLRVLSEAGYDANESIINDGLDLYGHDISRDLVRTHLSWLEEQGLLTIERLKDGYMVASITQRWLRCSTRSCGSGRRKTPPPENLNTV*	hhsuite_tools	hypothetical_protein	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0028	cloud	direct	high	308	0.997	GCA_000027305.1_01601
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1571954	1572523	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	13182	13751	GCA_000027305_1_1_1540	GCA_000027305_1_1_1540	+	1830138	.	pfam11985	Protein of unknown function (DUF3486). This family of proteins is functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are about 190 amino acids in length.	MNDKTTRGRASKVDLLPPNIKSTLTMMLRDKQYSQAEILEEINNIIADSGLDESMQLSKTGLNRFASKMERFGKKIREAREVAEVWTKQLVEAPQSDIGKLLMEAVKTMAFDLTLNADEAVANDPKFLNQLALIANRIEQAQSISEERERKVRKEVAQQAADTAEKVISQAGLSADTVAQIKQQILGIA*	mmseqs_cdd	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0029	cloud	direct	high	569	0.998	GCA_000027305.1_01602
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1572523	1574049	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	13751	15277	GCA_000027305_1_1_1541	GCA_000027305_1_1_1541	+	1830138	.	PDB:4IEE_A	Large-Terminase	MQTLPDLIPFDPNALLLGYQKRWVADTSQLKIAEKSRRTGLTWAEAADDVMIASLAKSEGGSDVFYIGSNKEMAREFIDACAMWAAQFNRAAGQIQEELFNDEDKDILTYVIYFASGFKIKALSSNPKNLRGMQGVVCIDEAAFHEKLAEVLKAALALTMWGAKVRLISTHNGVDNLFNQLIQDSRAGRKSYSVHTITLDDACAEGLYQRICQVSKQLWTPEKEAAWKAGLLRETATEDDALEEYYCVPKASSGAYIPRPMIERAATEGKAKLRFECDAKFMEWTEDERTVITSEFCLTQLLPHLQALNPDRRHAFGVDFARSADLSVYAVCAVQPDTARHFDLTLEIKNCPYNQQKQIMLFMLANLPRLIGAAFDATGNGGYLAEAALIRYGSSMVEAVQLNEKWYREWMPKYKALYESGYIQIPKDEEIILDHGHIQVINGVPKIDKSRSKDKSGKRHGDSAVAYCMAVRASYMTGGEIDFIPLPDKHSDRSENDEFDDFISNWDW*	hallmark_hmm	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0030	cloud	direct	high	1526	0.999	GCA_000027305.1_01603
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1574061	1575623	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	15289	16851	GCA_000027305_1_1_1542	GCA_000027305_1_1_1542	+	1830138	.	PDB:5NGD_C	Portal-protein	MQSRILDIHGNPFRFEADMQTESESRLMPLQYHYSDHPASGLTPAKAARILRAAEQGDLVAQAELAEDMEEKDTHILSELSKRRGAITAVDWQIKPPRNATPEEQRDAEMLQEILEDAVWLDDCIFDATDAILKGFSSQEIEWEQGLVGGLKLIKNVHWRDPAWFMTPAYQRNSLRLRDGTPEGAEMQQFGWVKHVARAKTGYLSRIGLVRTLVWPFIFKNYSVRDFAEFLEIYGLPLRLGKYPEGATDKEKQTLLRAVMSIGHNAGGIIPRGMELEFEKAADGSDSTFMAMIEWAEKSASKAILGGTLTSQADGATSTNALGNVHNDVRLEIRNADLKRLAATLTRDLVYPLYALNCKSFNDARRIPRFEFDVAESEDLNAFADGLNKLVDIGFRIPKQWAHDKLQVPIATENEEVLAKSFQNPTAYMHSKADGKMAVLSVQPDPEDLLDNLEPTAEDYQAVIDPLLKPVVEALQKGGYEFAQEKLAILYAEMNDEELETLLTRAIFVSDLLGRANAKR*	hallmark_hmm	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0031	cloud	direct	high	1562	0.999	GCA_000027305.1_01604
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1575714	1576958	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	16942	18186	GCA_000027305_1_1_1543	GCA_000027305_1_1_1543	+	1830138	.	PFAM:PF04233.13	minor-capsid-component	MNITWNWYEQLESAHARAFTVAKATKAEVLDTIRWATEQAIANGTGEREYIKKLEPMLKELGWWGKAKDENGNEVQLGSPRRLRTILRTNKITAYHAARYAQQMENVDEQPYWRYVAVNDSRTRASHLALHGKIYRADDPIWQTMYPPNDWGCRCRVEALSEYAVQSRGLKISSSDGEMEMEEAVVGIDKDTGEEIRTTVSKIKTDQGEMKVGAGWNYNVGSAAFGTDVAVLRKLQQVKNRELRQQTIQAINNSEARHKAFADWVLANLGKRGASARYMSAGLVTTEIAEAVTEITQGGKNAELVLVMSEKRLAHANSDKHHEGGVGLTAEEYASISRIVANPSLVLWDTLEGHNNLIYINQERTIQVIVDVPNKHSIKPKEKVDAIINAYKVDMNNVKRQLSGGNYVLLKGKL*	hallmark_hmm	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0032	cloud	direct	high	1244	0.999	GCA_000027305.1_01605
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1577096	1577536	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	18324	18764	GCA_000027305_1_1_1544	GCA_000027305_1_1_1544	+	1830138	.	CDD:TIGR01635	phage-virion-morphogenesis-protein	MHIEYKFDTSTIQQKFKKLAQVMDGRDITRKVAGVLRQEAEKFFDLEQAPTGEKWEDLDEDYKKYRYAAGHTGKILQIRGGRGLAGSLSLDYGDNYALIGAAEEYGGFHQLGTTFMPARPFLGLGKDGVSEIKAILNRELSELTQE*	hallmark_hmm	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0033	cloud	direct	high	440	0.998	GCA_000027305.1_01606
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1577767	1578834	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	18995	20062	GCA_000027305_1_1_1545	GCA_000027305_1_1_1545	+	1830138	.	pfam10123	Mu-like prophage I protein. Members of this family of proteins comprise various viral Mu-like prophage I proteins.	MKAEKTSLAVLTAQLTSPDGWQQLLPKGEFRSRDGSPTDVAHWFIDGTIAQNLIHKARQLNQDLLVDYDHETILKAKKGIDAGNVVAAGWFNADEIQWFDDETRQGLYIKPRWTPKAYQQIKDGEFAFLSAVFPYDENGTPLELRMAALTNDPGITGMQRLAVLSATLNPQENVKMPESLRKLLAKLGVEIAEGVELTEEQANTALNALETLQTDKTKADEQVATLSAKNTEVDLSQYVPKATYDAVMSQVAVLSAKTDDVEIDNHISKARNEGRAVEAEVEYLKQFGKQQGVAALSAMLEKRPQIAVLSAQQTQTTKVEKPVEKGTAVLSAADKEAAKLLGISEQDYAKELEAK*	mmseqs_cdd	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0034	cloud	direct	high	1067	0.999	GCA_000027305.1_01607
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1578834	1579760	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	20062	20988	GCA_000027305_1_1_1546	GCA_000027305_1_1_1546	+	1830138	.	PFAM:PF10124.8	major-capsid-subunit-gpT	MANVTPDLVKALFVGFGKNFKDGLAKAPSQYTEIATVVKSTTASNTYAWLGQMPGLTEWIGDRTLTAIQSHGYSIVNKKWANGVEIQRTDIEDDNVGVYSPLIEELGRAAGEKADELVFGALTAGFKTACYDGQYFFDTDHPVGANVDGTNQKSVSNITDDSTGVTEANAWYLLDCSRSLKPIIYQERKAPTPAQITDANDEKVFMKDVFTYGVDSRSNVGYGFWQMAHAVKGKLTAENLWKAIEAMRAVRGDGDKRLAIRPTHIVVPPSLAQAATKLLERELRAEDGVAVDNEFKRMNLKLIVGDYL*	hallmark_hmm	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0035	shell	direct	high	926	0.999	GCA_000027305.1_01608
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1579843	1580100	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	21071	21328	GCA_000027305_1_1_1547	GCA_000027305_1_1_1547	+	1830138	.	pfam17891	Mu-like prophage FluMu N-terminal domain. Structural analysis of HI1506 (also known as Mu-like prophage FluMu protein gp35) from Haemophilus influenzae show that HI1506 consists of two structured domains connected by an unstructured 30 amino acid loop. This entry is the N-terminal domain which comprises a three-stranded antiparallel beta-sheet packed against an alpha-helix.	MDKTFCVVVQNRIKEGYRRAGFSFHLGDNSLAAVSESQLAQLKADPRLVVQITETGSQEGGEGLSKELRVVTNRNNFVLIHHQPI*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0036	cloud	direct	high	257	0.996	GCA_000027305.1_01609
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1580112	1580228	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	21340	21456	GCA_000027305_1_1_1548	GCA_000027305_1_1_1548	+	1830138	.	PFAM:PF08198.10	Arc-like-repressor	MEQLKAQLTERGITFKQSATKAELIALFAPADGEKSEA*	phrogs_hmm	hypothetical_protein	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0037	.	unmatched_CDS	none	0	0	.
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1580231	1580656	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	21459	21884	GCA_000027305_1_1_1549	GCA_000027305_1_1_1549	+	1830138	.	CDD:cd08053	head-to-tail-adaptor	MVLYANRESLIKRYTLKVLEQIAWLPEAQSLDEAKVQEALEDASQTIDSYLGGRYVLPLKTVPAVLERHCCYIARYFLEKNRATDQARQDYEDTIRFLEKVASGAISLGLSDDDETVESENGAMMESAGSVWGRNTSKGFI*	hallmark_hmm	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0038	cloud	direct	high	425	0.998	GCA_000027305.1_01610
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1580656	1581207	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	21884	22435	GCA_000027305_1_1_1550	GCA_000027305_1_1_1550	+	1830138	.	PFAM:PF08873.10	tail-completion-protein	MSVIAETNEALLAKIKALCGDYLREVDTHPGQWDDSSVRRLVRNPPAVYVAWLGQQPNNNPHTVTARWGVFVVAEVLNGQRRNAVGIYQIVETLTAGLHKQRIAPSGMFELQTVQNLWSDTQSGMGVAVYGMYFNAVQPLPDMTSDDTLCDFKIYDHTFNQDKDEHTIDGKTRLTVELPTQSD*	hallmark_hmm	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0039	cloud	direct	high	551	0.998	GCA_000027305.1_01611
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1581220	1581411	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	22448	22639	GCA_000027305_1_1_1551	GCA_000027305_1_1_1551	+	1830138	.	pfam10948	Protein of unknown function (DUF2635). This is a family of phage proteins with unknown function.	MPTFKIKPKTGLLIRDPETFELLSESGEDKPKISYWLNHLKNGDVELVTETTTKAKNSNKEQA*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0040	cloud	direct	high	191	0.995	GCA_000027305.1_01612
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1581411	1582874	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	22639	24102	GCA_000027305_1_1_1552	GCA_000027305_1_1_1552	+	1830138	.	PDB:5LI4_E	tail-component	MSISFNNIPSALRVPLTYIEFDNTKAVSGPPTALHKVLMLGTKLATGSAKAGEAVRVSAYAQAKTLFGRGSQLAEMVKTFKAHNSTLDLWVLPLDEAPSGAKATGSVQITGTATQAGTFSLMIAGNNYKTAVTSGDTADVVAGKLQKLIAADQDVPVVATVAGNTITLTCRFKGETGNEIDLRCNYYSGEAFPEGLKATITDMKNGAVNPDMSVAITGLGAEWWNYIINPFTDTESLNLLRADLVKRWGPLKQIDGICFMAKRGTHAEVTTFAEQRNDYLFSLLATHKAPQPAYLWASAYAAVVAGSLAIDPARPVQTLVMDLLPPSMSDRWDLPERNTLLYSGVSTYTVNAGSQPQVEAAITMYRKNAFGDNDESYLYVETIATLSYLRYAIRSRITQKFPRHKLANDGTRIGPGQAIVTPKIIRNELLALFTELEFAGLVEDFEQFNQTLFVERDSNNPCRVNVLSNENLVNQFRIYAHAIQFIL*	hallmark_hmm	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0041	cloud	direct	high	1463	0.999	GCA_000027305.1_01613
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1582884	1583240	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	24112	24468	GCA_000027305_1_1_1553	GCA_000027305_1_1_1553	+	1830138	.	pfam10618	Phage tail tube protein. This bacterial family of proteins contains phage tail tube proteins related to the Mu phage tail tube protein M. Bacteriophage Mu has an eicosahedral head and contractile tail. The tail is composed of an outer sheath and an inner tube.	MATQFQGSAIIRLNGKEWPSDNDGTLTPGGKERETVKGSRVYGFSEKPTEAMVECTVFNCAETDVMELQNITNATVEFETDIGQVYLLPGAWTVETGTLSADGKIKLKMASIECKRVQ*	mmseqs_cdd	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0042	cloud	direct	high	356	0.997	GCA_000027305.1_01614
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1583253	1583636	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	24481	24864	GCA_000027305_1_1_1554	GCA_000027305_1_1_1554	+	1830138	.	COG4518	Mu-like prophage FluMu protein gp41  [Mobilome: prophages, transposons]. 	MKLMLETGLMFGEEAQLEVTMRELTTGDLLDAEMAAERLVMTPEGEAVLAKSPALFGYELLRRQIASVGKINGPISMRQLRSLTTEDLNRISLYAQSWESAKAEQVVSRGRLDTADQETGKDLSAVS*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0043	cloud	direct	high	383	0.997	GCA_000027305.1_01615
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1583720	1585612	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	24948	26840	GCA_000027305_1_1_1555	GCA_000027305_1_1_1555	+	1830138	.	Uniprot:A0A0A8U8Z7_ECOLX	tail-tape-measure-protein-	MANNSTSFFVNLAGNVSQQAARFSNSIANMANKNVSSLNKVSRAISAVSKGFNGLGNITIPIIGVGAAAGATMVGKSMLRTAADFEMAKIRMKQTFGEQGEAADAWLKKFATDTPMAFADTQDAMMRLKTAGIDPMNGSLQALVDYNAKVGGDKANLDGYISAISKGFIKGKLSMEEINPLLERNVKVFEILAKETGGKYTADQMQKMLQEGKLGRKAIHALLRGMGRDAQGAAKEQMKTWDGLVSNLEDTWTSMQARFMEHGAFDALKKELGDFVEWLNEKIDDGTLDDFPKTVSDTLIEALKNLKEMAKDVKPVLESIGSVMSWVSEKAGGYGNLAKFMGALYLGNKVLRNDKVQTLGGWGWSGAKWGYNKIFNRKKGGAGGLADGVAGALGATVGVTPVYVTNFPMGFGGGGGGGYGYDVIEDGRDKDKKTQKKNKPPRPKRGRGSVRSPVAAVAASAAAVPKVAAPVTTASSGVARSVGNGVKSLGRGASKAVPYLGTGLAVAEGVTVLMDDTTNTKEKSEAIGSIAGATAGAIVGQALIPIPVVGAAVGSYLGGWLGEWLGSEVGEYLSDPEPIKNELNGTINIAVKASDQLIATATQAKIQTNQQRDSLETAVQMGTLGMGGMW*	hallmark_hmm	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0044	cloud	direct	high	1892	0.999	GCA_000027305.1_01616
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1585612	1586979	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	26840	28207	GCA_000027305_1_1_1556	GCA_000027305_1_1_1556	+	1830138	.	COG4228	Mu-like prophage DNA circulation protein  [Mobilome: prophages, transposons]. 	MASKITGKGSFRGVPFLIEEEQGLDGGRRIVSHEYPLRDEGLTEDMGKRLRRYQVSCLVIGDDHLAQAEKLIDALEASGAGTLKHPYFGTIEVRVDDYRAKNSTNHQRVTRFDINFLPAIEKNAPEIAEDTAYSVLSEYQATLNSLSDEFAEMVQDVSGFIESMVDNPLFRLADTTAAFIENIFEGVANTVSGLTEVKDKALSIKNRLSNLLLTPKVLAYELQQLTRLNVRSAVNSQRQFVQHIVITDSISSALGDLTATKNEISKSTLDEMVTAKTNNVAETEILARQFKNLHEQEIFDALMNKTTFLLKRLVLSTLAVEYGKAISDAVTESVAQKTVTEETIATLIESKTDVQRYIAEVDEQLEAVILDNADAEQWTSYAALEQYRLTLMRDLQIRGERLANAIEVKLNDTYPAILLEYRHTGNSKTWKRLALRNGISHPLFCLGGTTLEVLQ*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0045	cloud	direct	high	1367	0.999	GCA_000027305.1_01617
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1586979	1587764	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	28207	28992	GCA_000027305_1_1_1557	GCA_000027305_1_1_1557	+	1830138	.	PDB:1WRU_A	Tail-protein	MPDTNNTETNNKIELYLNGKILSGWKSLNLQRSLESMSGRFDLGIAVRPEDDISVLAAGSPLVLKMGGQTVITGYLDEIKQRVSGNDKTISVSGRDKTCDLVDCAIIHNSYQFKNQTAKQIAEAICKPFGISVVWQVQAPEANERIPVWQVEPGETAFDNLSKIARHKGVLVTSDVDGNLLFTEPSNKQVGNLTLGENLLELEQTDSWLQRFSLYRVIGDAEQGGAKGDTKTKNKAAKGKEKDDGVVEDPDIYPGPAEGGK*	hallmark_hmm	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0046	cloud	direct	high	785	0.999	GCA_000027305.1_01618
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1587764	1587982	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	28992	29210	GCA_000027305_1_1_1558	GCA_000027305_1_1_1558	+	1830138	.	PDB:1WRU_A	Tail-protein	MSASGLKVEVNDEAINRYRPMIIIADDNMTGSSGYQRADWERKRRQAEGKKPQHECKVGLSLTAHCGYRMNW*	hallmark_hmm	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0047	cloud	direct	high	218	0.995	GCA_000027305.1_01619
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1587928	1588239	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	29156	29467	GCA_000027305_1_1_1559	GCA_000027305_1_1_1559	+	1830138	.	PDB:1WRU_A	Tail-protein	MQGWFKPDGTLWLPNELVVLDAPQFGIHKAERLIVDCTYTLDEKGTITEMTLMHRDAFDEPADDTLDDTKDSKGKKDKGKKGKSKKAKKSDKDNVSEFTGFLD*	hallmark_hmm	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0048	cloud	direct	high	311	0.997	GCA_000027305.1_01620
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1588276	1588824	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	29504	30052	GCA_000027305_1_1_1560	GCA_000027305_1_1_1560	+	1830138	.	CDD:TIGR01644	phage-baseplate-assembly-protein-V	MQAINRIIAPLKRGLQLLVSRAVVSVVNDAYARQNLQLRLQSEEVADDVERFQNYGHYSVPKAGEAIVVSVGGKRSHLVAVVVDDKSVRPAGLIAGDSVLYHLEGHQLRLTENGEAILSCKKFTIETDTLDCSAQQITFDSPQTTFTGNVDIMGISTATDHQSSGISGKNHDHEERVGKPVP*	common_virus_hmm	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0049	cloud	direct	high	548	0.998	GCA_000027305.1_01621
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1588833	1589240	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	30061	30468	GCA_000027305_1_1_1561	GCA_000027305_1_1_1561	+	1830138	.	COG4381	Mu-like prophage protein gp46  [Mobilome: prophages, transposons]. 	MSDLALTWHNGEGDLVLGTESLLLDDSLTNAIIISLFTDLRVEGERGWWGDSYNDGFQTGSKLWTLSRAKQLPEILDDAQLYASQALQWLVDDGVAKSVQVIASNPQMSVLLLEILVVLPDGSTEQRTFRANWSL*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0050	cloud	direct	high	407	0.998	GCA_000027305.1_01622
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1589240	1590307	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	30468	31535	GCA_000027305_1_1_1562	GCA_000027305_1_1_1562	+	1830138	.	PFAM:PF04865.13	Baseplate-J-like-protein	MAFNTPTLSTLIKQGEQQFQYRFPTLKRHNVIGVINRICAALSAGEHMHLDWLARQIIPTTAEEDYLIEYCLYKGIVRKQASTATGLVTVTAANDTTIPAGTVFEDTNTGLTFITTQETVVKAGTADIAVKCETTGVEGNLKAGTSLSLTSAILGLLPTATVKVMSGGADIESLSRLLARLIYRVQYPPAGGASHDYIRWATEVPGVTRAWCFERYYGGGTVGVAFACDEREDILPTPEDIARVRAYIEGHKNEVTGQFEGMPANVELYVFAPQFQAVNFKIRLAPNTPTLRQAVRKSLAAYLANAGVGALLYLSQIRATVSNTAGEVDNSVIFPTADVQLLSDNIAILGDIEWL*	hallmark_hmm	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0051	cloud	direct	high	1067	0.999	GCA_000027305.1_01623
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1590402	1590899	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	31630	32127	GCA_000027305_1_1_1563	GCA_000027305_1_1_1563	+	1830138	.	PFAM:PF10076.8	tail-protein	MRCDQLVEVNSKAHTLIKERMPGQATLLLEEWEGFYGLPECGRQIVGKTLVQRQKQVQEKENEVGSNSKRFLEEIATQAGFKVRVVNHYPHHCLRDCTYPLYEQANHWRIFMYTPAVSSIRYATCLDDVVKNLTIFERNKELECLLKRYQYAHLEFVFIYEEETQ*	hallmark_hmm	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0052	cloud	direct	high	498	1.0	GCA_000027305.1_01624
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1590899	1592770	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	32127	33998	GCA_000027305_1_1_1564	GCA_000027305_1_1_1564	+	1830138	.	PDB:4OJL_C	Tailspike-protein	MYHLDNDSGVSTFALAPVKSTQRLWFTEGGHGNAISYPGADWFNMVQAELFSILDDAGIQPDKGRLNQISLAIRKLSEGKVEDFSQQLKQADGYKYIGRCKSVAELRTIRPTENGQRILVDAYYEGSTAGGGEFVADLQDLITPDDGGTCFVVPNNGGRWKRLFSSSLQDTDFGVIGGVADDTTNLNAFLDALRTYKVKGYFTSRHYKTSAALNIAGVDIEGVLAGYKNKHGTRITGNGNHNIFEQMGGELQHITYSLKNFALSGGIVGLKMTYAVNAVVENVFIDNVERAFLLGDSQFVGPIWCSLKNCRGEGRISGLEIDGNKWANANMFETCFFKGDEFAGSITAKGGIGAVSNHFVNTEFAGKGVGVKLGKNKSTAFDNCYFESEGPSLLIEDSTADLALNNATFGSLTENNKTGKTSFIHHSLGTCNMSISSGYIYLAGNNQNNLAFIESDKPESLVVNMATPVKREIYTATGFKLFKNPDLPNKNSRVHYTSGYVCEFSSQNKNAELGNGDLTAYYNLNNSRCAVGLNLKIGSSTTKGTGQWQFRLPFQASGIGKYYLGQAIAIKADGSKLMTGVARIVGGSNQVVAYFNNVNPADATRPFEWTEGDRLDISIEYEI*	hallmark_hmm	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0053	cloud	direct	high	1871	0.999	GCA_000027305.1_01625
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1592773	1593009	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	34001	34237	GCA_000027305_1_1_1565	GCA_000027305_1_1_1565	+	1830138	.	PF06951.11	Group XII secretory phospholipase A2 precursor (PLA2G12)	MPKKHYCTGWRKAPTNINSCCHQHDRDYGIHGTISRADADKRLRECLIAQRYPFKAWIFWVIVRLLGWIFYKENKLSH*	hhsuite_tools	hypothetical_protein	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0054	.	unmatched_CDS	none	0	0	.
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1593429	1594274	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	34657	35502	GCA_000027305_1_1_1566	GCA_000027305_1_1_1566	+	1830138	.	PFAM:PF00145.16	DNA-methyltransferase	MANKKTFKQAPLPFIGQKRMFLKHVEIVLNKHIDGEGEGWTIVDVFGGSGLLSHTAKQLKPKATVIYNDFDGYAERLNHIDDINRLRQIIFNCLHGIIPKNGRLSKEIKEEIINKINDFKGYKDLNCLASWLLFSGQQVGSVEALFAKDFWNCVRQSDYPTAEGYLDGIEVISESFHKLIPRYQNQDKVLLLLDPPYLCTRQESYKQATYFDLIDFLRLINLTKPPYIFFSSTKSEFIRYLNYMQESKTDNWRAFENYKRIVVKASASKDGIYEDNMIYKF*	phrogs_hmm	hypothetical_protein	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0055	cloud	direct	high	845	0.999	GCA_000027305.1_01626
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1594338	1594853	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	35566	36081	GCA_000027305_1_1_1567	GCA_000027305_1_1_1567	-	1830138	.	TIGR01581	NifC-like ABC-type porter. This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.	MKVSYRLNNCLSLKLALIPLLILLFVVMGSVLSLIAKLDFYFFQQILFNSELHFALLMSLGTSLFSLILALCIAIPSAWRMSQVRLPFQSFFDTLFDLPMVLPPLVTGLSLLLLFSSQGILAELLPFISKWIFSPVGIIIAQTYIASSILLRCSEPLKLRKKTIKTTKIKP*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0056	shell	direct	moderate	435	0.843	GCA_000027305.1_01627
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1594828	1595565	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	36056	36793	GCA_000027305_1_1_1568	GCA_000027305_1_1_1568	-	1830138	.	cd13517	Substrate binding domain of molybdate binding protein-like (ModA3), a member of the type 2 periplasmic binding fold superfamily. This subfamily contains molybdate binding protein-like (ModA3) domain of an ABC-type transporter. Molybdate transport system is comprised of a periplasmic binding protein, an integral membrane protein, and an energizer protein. These three proteins are coded by modA, modB, and modC genes, respectively. ModA proteins serve as initial receptors in the ABC transport of molybdate mostly in eubacteria and archaea. ModA transporters import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. In contrast to the structure of the two ModA homologs from Escherichia coli and Azotobacter vinelandii, where the oxygen atoms are tetrahedrally arrangted around the metal center, the structure of Pyrococcus furiosus ModA/WtpA (PfModA) has shown that a binding site for molybdate and tungstate where the central metal atom is in a hexacoordinate configuration. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge.  They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	MKKLVAVTSMILTTFSVQAADLYLYAGAGLKEPVEKIIHQYEQETGNKVTVEYGGSGQILARYNTVKSGDLFLAGSEDYVTKLQKTNDVNNIGTIVLHVPVMAIRKDKISGIDSFKALAESSLRLGIGDSKAMALGKGAEKMFELSGYQKQLNDKIVVKAATVKQLMLYLLNGDVDAAVVGRSGAWKVRDKVELLPSPKGTPEEKVTIGLLFSSKYPKEAQQLFDFFKSPQGVKYFTDEGFLPAK*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0057	shell	direct	high	737	0.999	GCA_000027305.1_01628
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1595752	1597182	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	36980	38410	GCA_000027305_1_1_1569	GCA_000027305_1_1_1569	-	1830138	.	PRK11316	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE. 	MAQYSAEFKQAKVLVLGDVMLDRYWFGATNRISPEAPVPVVRVQENEERAGGAANVAMNIASLNVPVQLMGLIGQDETGSALSLLLEKQKIDCNFVALETHPTITKLRILSRHQQLLRLDFEEDFNNVDCKDLLAKLESAVKNYGALILSDYGKGTLKDVQKMIQIARKANVPVLIDPKGTDFERYRGATLLTPNMSEFEAVVGKCNTEEEIIEKGLKLISDIELTALLVTRSEKGMTLLRPNQEPYHLPTVAKEVFDVTGAGDTVISVLATALADGRSFEESCYLANVAAGIVVGKLGTSTVSTVELENAIHARPETGFGIMSEAELKDAVAQAKARGEKIVMTNGCFDILHPGHISYLENARKLGDRLIVAVNSDDSVKRLKGESRPINNLENRMAVLAGLASVDWLVPFTEDTPQRLIGEILPDLLVKGGDYKPEEIAGSKEVWANGGDVKVLNFENGCSTTNVIEKIKLLKD*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0058	persistent	direct	high	1430	0.999	GCA_000027305.1_01629
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1597279	1598214	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	38507	39442	GCA_000027305_1_1_1570	GCA_000027305_1_1_1570	+	1830138	.	PRK06860	lipid A biosynthesis lauroyl acyltransferase; Provisional	MKNEKLPQFQPHFLAPKYWLFWLGVAIWRSILCLPYPILRHIGHGFGWLFSHLKVGERRAAIARRNLELCFPDMPENEREVILQENLRSVGMAIIETGMAWFWSDSRIKKWSKVEGLHYLKENQKDGIVLVGVHFLTLELGARIIGLHHPGIGVYRPNDNPLLDWLQTQGRLRSNKDMLDRKDLRGMIKALRHEETIWYAPDHDYGRKNAVFVPFFAVPDTCTTTGSYYLLKSSQNSKVIPFAPLRNKDGSGYTVSISAPVDFTDLQDETAIAARMNQIVEKEIMKDITIYMWLHRRFKTRPDEKTPSLYD*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0059	persistent	direct	high	935	0.999	GCA_000027305.1_01630
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1598288	1600186	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	39516	41414	GCA_000027305_1_1_1571	GCA_000027305_1_1_1571	+	1830138	.	PDB:4URL_A	DNA-topoisomerase-IV	MTTNYSAQEITVLKDLEPVQIRPGMYTDTTRPNHLAQEVIDNSVDEALAGFATKIEVILHPDQSIEVTDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGISVVNALSERVDIQVKRNGEIYKIAFENGSKVEELEIIGTCGRRTTGTIVHFKPNPKYFDSAKFSVSRLRHLLRAKAVLCSGLEIKFIDKVNNTQDIWLYEDGLSDYLIEAVNGFETLPKKPFVGEFKGANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLRAAKKVVRKKLVSGPALPGKLADCGSQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIAVALGIDPDSNDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYRIDLNKEVFYALDENEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVDLSV*	common_virus_hmm	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0060	persistent	direct	high	1898	0.999	GCA_000027305.1_01631
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1600253	1602496	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	41481	43724	GCA_000027305_1_1_1572	GCA_000027305_1_1_1572	+	1830138	.	PDB:4FM9_A	DNA-topoisomerase-2-alpha	MTNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMRATWKKEDGEIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYANPRMSQLVEREEAKMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYSGKRKIVLKPEDLQKFRAERGRKGSTLPRGLHTNLEIMVIEP*	common_virus_hmm	common_virus	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0061	persistent	direct	high	2243	1.0	GCA_000027305.1_01632
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	CDS	1602538	1603752	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	43766	44980	GCA_000027305_1_1_1573	GCA_000027305_1_1_1573	+	1830138	.	TIGR00210	sodium--glutamate symport carrier (gltS). [Transport and binding proteins, Amino acids, peptides and amines]	MSYTFSTYETLALASLVLLLGYFLVKRINVLKTFNIPEPVVGGFIVAIGLLIWHKIDGTSFNFDKNLQTTMMLVFFTSIGLSANFSRLIKGGKPLVVFLFIAALLIFGQNVIGIASSMALGIHPAYGLLAGSVTLTGGHGTGAAWADTFAHQFNLQGATEIAIACATFGLVFGGIIGGPVARFLLNRQKQGENPENDEVDDIQEAFEHPTYKRKITARSLIETIAMISVCLLIGQYLDVQTKGTALQLPTFVWCLFTGVIVRNILTNIFRFQVAESAIDVLGSVGLSIFLAIALMSLRLWELAGLAIDVLIVLAIQVAFMAAFAIFITYRAMGKDYDAVVLSAGHCGFGLGATPTAIANMQAVTSRFGPSHKAFLIVPMVGAFFIDLINAALLKVSFAVVNILA*	mmseqs_cdd	nonviral_gene	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_CDS_0062	persistent	direct	high	1214	0.999	GCA_000027305.1_01633
GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote	cenote	tRNA	1513213	1513295	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C81	14378	14460	tRNA-Leu	tRNA-Leu	-	1830138	.	tRNAscan-SE score: 61.6	Leu	NA	tRNAscan-SE	.	C81	15522	1498836	1514358	GCA_000027305.1|L42023.1@region_1498837_1514358@tool_cenote_tRNA_0001	.	.	.	.	.	.
GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote	cenote	tRNA	1576959	1577040	GCA_000027305.1	L42023.1	GCA_000027305.1|L42023.1	GCA_000027305.1_L42023.1	GCA_000027305.1|L42023.1	GCA_000027305_1_1	GCA_000027305_1_1@C83	18187	18268	tRNA-Gly	tRNA-Gly	-	1830138	.	tRNAscan-SE score: 33.7	Gly	NA	tRNAscan-SE	.	C83	44980	1558773	1603753	GCA_000027305.1|L42023.1@region_1558774_1603753@tool_cenote_tRNA_0001	.	.	.	.	.	.