core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2965382	2965813	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	1	432	GCA_000153685_2_1_2672	GCA_000153685_2_1_2672	+	4408224	.	.	hypothetical protein	MTTTPRQPLFCAHADTNGDPGRCACGQQLADVGPATPPPPWCEPGTEPIWEQLTERYGGVTICQWTRYFPAGDPVAADVWIAADDRVVDGRVLRTQPAIHYTEPPVLGIGPAAARRLAAELLNAADTLDDGRRQLDDLGEHRR*	.	hypothetical_protein	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0001	persistent	direct	high	431	0.998	GCA_000153685.2_02767
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2965810	2966808	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	429	1427	GCA_000153685_2_1_2673	GCA_000153685_2_1_2673	+	4408224	.	PDB:1Z19_B	Integrase	MNTATRVRLARKRADRLNLKLIKNGHHFRLRDADEITLAVGHLGVVEAFLAAAKSQNKPPGPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYLAALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVRAAAAAAW*	common_virus_hmm	common_virus	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0002	persistent	direct	high	998	0.999	GCA_000153685.2_02768
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2966822	2967286	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	1441	1905	GCA_000153685_2_1_2674	GCA_000153685_2_1_2674	+	4408224	.	PDB:1VZ0_B	ParB	MLQPIGVTPDRRLVFGQRRLEAARLLGWERIPVHVCHTIADVVDRAKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQARYSGLGSMEPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSEAGYRDGLNGWSG*	common_virus_hmm	common_virus	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0003	persistent	direct	moderate	368	0.791	GCA_000153685.2_02769
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2967253	2967453	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	1872	2072	GCA_000153685_2_1_2675	GCA_000153685_2_1_2675	-	4408224	.	.	hypothetical protein	MGVQRAIEREIRRRYEAWRRQAEQARKAAEDELRKRGRERRPLDKLPPGPIPGTGGQPLQPFKPSR*	.	hypothetical_protein	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0004	cloud	direct	high	200	0.995	GCA_000153685.2_02770
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2967696	2969135	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	2315	3754	GCA_000153685_2_1_2676	GCA_000153685_2_1_2676	-	4408224	.	CDD:COG4653	Major-Capsid-protein	MTNEQHFADDGDIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRRRGREAEEALRRCRAGELRVVPGAPTGGDDGDAPPGNSLRDTAFRTLDVCVRDGLMSSRAAEAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWREAAAVAAEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEGAEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQLQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTINVLRQAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA*	hallmark_hmm	common_virus	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0005	persistent	direct	high	1439	0.999	GCA_000153685.2_02771
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2969143	2969622	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	3762	4241	GCA_000153685_2_1_2677	GCA_000153685_2_1_2677	-	4408224	.	CDD:COG3740	head-maturation-protease	MYGVIVPYGEVTTVRDLDGEFREMFAPGAFRRSIAERGHKVKLLVSHDARTRYPVGRAVELREEPHGLFGAFELANTPDGDEALANVKAGVVDAFSVGFRPIRDRREGDVIVRVEAALLEVSLTGVPAYLGAQIAGVRAESLAVVSRSLAEARLALMDW*	hallmark_hmm	common_virus	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0006	persistent	direct	high	479	0.998	GCA_000153685.2_02772
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2969829	2970161	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	4448	4780	GCA_000153685_2_1_2678	GCA_000153685_2_1_2678	-	4408224	.	CDD:COG3747	Small-Terminase	MWGRVVPELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPFAPDR*	hallmark_hmm	common_virus	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0007	persistent	direct	high	332	0.997	GCA_000153685.2_02773
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2970487	2970810	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	5106	5429	GCA_000153685_2_1_2679	GCA_000153685_2_1_2679	-	4408224	.	.	hypothetical protein	MTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQRRLEAGMKLGWHPYHFPDEPDSKQ*	.	hypothetical_protein	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0008	persistent	direct	high	323	0.997	GCA_000153685.2_02774
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2970890	2971135	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	5509	5754	GCA_000153685_2_1_2680	GCA_000153685_2_1_2680	-	4408224	.	.	hypothetical protein	MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAESHGVAAVLFAATAAAAAAVDRGDPP*	.	hypothetical_protein	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0009	persistent	direct	high	245	0.996	GCA_000153685.2_02775
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2971132	2972559	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	5751	7178	GCA_000153685_2_1_2681	GCA_000153685_2_1_2681	-	4408224	.	pfam12307	Protein of unknown function (DUF3631). This protein is found in bacteria. Proteins in this family are typically between 180 to 701 amino acids in length.	MADIPYGRDYPDPIWCDEDGQPMPPVGAELLDDIRAFLRRFVVYPSDHELIAHTLWIAHCWFMEAWDSTPRIAFLSPEPGSGKSRALEVTEPLVPRPVHAINCTPAYLFRRVADPVGRPTVLYDECDTLFGPKAKEHEEIRGVINAGHRKGAVAGRCVIRGKIVETEELPAYCAVALAGLDDLPDTIMSRSIVVRMRRRAPTEPVEPWRPRVNGPEAEKLHDRLANWAAAINPLESGWPAMPDGVTDRRADVWESLVAVADTAGGHWPKTARATAETDATANRGAKPSIGVLLLRDIRRVFSDRDRMRTSDILTGLNRMEEGPWGSIRRGDPLDARGLATRLGRYGIGPKFQHSGGEPPYKGYSRTQFEDAWSRYLSADDETPEERDLSVSAVSAVSPPVGDPGDATGATDATDLPEAGDLPYEPPAPNGHPNGDAPLCSGPGCPNKLLSTEAKAAGKCRPCRGRAAASARDGAR*	mmseqs_cdd	nonviral_gene	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0010	persistent	direct	high	1427	0.999	GCA_000153685.2_02776
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2972561	2972953	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	7180	7572	GCA_000153685_2_1_2682	GCA_000153685_2_1_2682	-	4408224	.	pfam10888	Protein of unknown function (DUF2742). Members in this family of phage proteins are the product of the gene phiRv1, however no function is known.	MTAVGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV*	mmseqs_cdd	nonviral_gene	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0011	persistent	direct	high	392	0.997	GCA_000153685.2_02777
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2972950	2973147	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	7569	7766	GCA_000153685_2_1_2683	GCA_000153685_2_1_2683	-	4408224	.	TIGR01764	DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General]	MADAPPLSRRYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHPFGGAA*	mmseqs_cdd	nonviral_gene	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0012	cloud	direct	high	197	0.995	GCA_000153685.2_02778
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2973227	2973592	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	7846	8211	GCA_000153685_2_1_2684	GCA_000153685_2_1_2684	-	4408224	.	.	hypothetical protein	MMADAVKYVVMCNCDDEPGALIIAWIDDERPAGGHIQMRSNTRFTETQWGRHIEWKLECRACRKYAPISEMTAAAILDGFGAKLHELRTSTIPDADDPSIAEARHVIPFSALCLRLSQLGG*	.	hypothetical_protein	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0013	persistent	direct	high	365	0.997	GCA_000153685.2_02779
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2973592	2974719	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	8211	9338	GCA_000153685_2_1_2685	GCA_000153685_2_1_2685	-	4408224	.	PDB:1Z19_B	Integrase	MTQTGKRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPASGQEDRPGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPATLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEGFKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRMFYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDREIAALLSKLAENQEM*	common_virus_hmm	common_virus	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0014	persistent	direct	high	1127	0.999	GCA_000153685.2_02780
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2975232	2975390	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	9851	10009	GCA_000153685_2_1_2686	GCA_000153685_2_1_2686	+	4408224	.	.	hypothetical protein	MSGGWLAEHLGLSTNRLRHELADRLDAHYGPPAQNRELARPSLRIINEGTDG*	.	hypothetical_protein	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0015	persistent	direct	high	158	0.994	GCA_000153685.2_02781
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2975754	2975987	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	10373	10606	GCA_000153685_2_1_2687	GCA_000153685_2_1_2687	+	4408224	.	PFAM:PF04365.12	toxin	MEVRASARKHGINDDAMLHAYRNALRYVELEYHGEVQLLVIGPDQTGRLLELVIPADEPPRIIHANVLRPKFYDYLR*	phrogs_hmm	hypothetical_protein	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0016	persistent	direct	high	233	0.996	GCA_000153685.2_02782
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2975998	2976252	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	10617	10871	GCA_000153685_2_1_2688	GCA_000153685_2_1_2688	+	4408224	.	PFAM:PF07638.10	HTH-DNA-binding-protein	MKHKTDIDEWLDTIEPNPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAFQRFGPHSTASP*	phrogs_hmm	hypothetical_protein	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0017	persistent	direct	high	254	0.996	GCA_000153685.2_02783
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2976600	2976902	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	11219	11521	GCA_000153685_2_1_2689	GCA_000153685_2_1_2689	+	4408224	.	.	hypothetical protein	MIVVRTAEAAEQALTEGQLVCPRRGCGDTLRRWRYGRRRHVRSLGSQVIDVRPQRVRCRRCESTHVLLPAALQPRLGRGGGGQLRPGGVVYGQVRPVGVS*	.	hypothetical_protein	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0018	persistent	direct	high	302	0.997	GCA_000153685.2_02784
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2976973	2977776	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	11592	12395	GCA_000153685_2_1_2690	GCA_000153685_2_1_2690	+	4408224	.	PFAM:PF00872.17	Transposase,-Mutator-family	MTSSHLIDTEQLLADQLAQASPDLLRGLLSTFIAALMGAEADALCGAGYRERSDERSNQRNGYRHRDFDTRAATIDVAIPKLRQGSYFPDWLLQRRKRAERALTSVVATCYLLGVSTRRMERLVETLGVTKLSKSQVSIMAKELDEAVEAFRTRPLDAGPYTFLAADALVLKVREAGRVVGVHTLIATGVNAEGYREILGIQVTSAEDGAGWLAFFRDLVARGLSGVALVTSDAHAGLVAAIGATLPAAAWQRCRTHYAANHGRHNA*	common_virus_hmm	common_virus	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0019	persistent	direct	high	803	0.999	GCA_000153685.2_02785
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2977798	2978556	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	12417	13175	GCA_000153685_2_1_2691	GCA_000153685_2_1_2691	+	4408224	.	COG0542	ATP-dependent Clp protease ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones]. 	MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANAAGATDAGATDAG*	mmseqs_cdd	nonviral_gene	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0020	persistent	direct	high	758	0.999	GCA_000153685.2_02786
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2978635	2979156	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	13254	13775	GCA_000153685_2_1_2692	GCA_000153685_2_1_2692	+	4408224	.	PF09167.11	Domain of unknown function (DUF1942)	MRRWLIVLATLLVAAAGVAAANDVPRAWAGDAPIGHIGDTLRVDTGTYVADVTVSSVVPVDPPPGFGYTRSGVPVKSFPDSSVTRADVTVRAVRVPNSFILATNFSFTGVTPFADAYKPRPCDASDWLDAALGNAPQGSIVRGGVYWDAYRDPVSVVVLLDEKTGQHLAQWNL*	hhsuite_tools	hypothetical_protein	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0021	persistent	direct	high	521	0.998	GCA_000153685.2_02787
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2979185	2979655	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	13804	14274	GCA_000153685_2_1_2693	GCA_000153685_2_1_2693	+	4408224	.	COG0456	Ribosomal protein S18 acetylase RimI and related acetyltransferases [Translation, ribosomal structure and biogenesis]. 	MTDADELAAVAARTFPLACPPAVAPEHIASFVDANLSSARFAEYLTDPRRAILTARHDGRIVGYAMLIRGDDRDVELSKLYLLPGYHGTGAAAALMHKVLATAADWGALRVWLGVNQKNQRAQRFYAKTGFKINGTRTFRLGAHHENDYVMVRELV*	mmseqs_cdd	nonviral_gene	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0022	persistent	direct	high	470	0.998	GCA_000153685.2_02788
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2979633	2980742	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	14252	15361	GCA_000153685_2_1_2694	GCA_000153685_2_1_2694	-	4408224	.	PDB:4M4W_K	Replicative-helicase,-DNA-primase	MTLIAARRYSATMHGSASEACGSVDHLVDRHPTVSPVRLIAQLRPPPTFAEVSFATYRPDPVEPTQAAAVVACQDFCRQAVERRAGRKKWFGKRDVLPGVGLYLDGGFGVGKTHLLASAYYQLPGTGPDAPTCPKAFATFGELTQLAGVFGFADCIDLLANYTALCIDEFELDDPGNTTLISRLLSALVERGVSVAATSNTLPEQLGEGRFAAQDFLREINTLASIFTTVRIEGPDYRHRDLPPAPAPLSDEEVAARAARVEGATLDDFDALCAHLATMHPSRYLTLIEGVTAVFLTGVHGIDDQNVALRLVALVDRLYDAGIPVVASGAKLDTIFSEEMLAGGYRKKYLRATSRLLALTAGVIQAREP*	common_virus_hmm	common_virus	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0023	persistent	direct	moderate	1074	0.968	GCA_000153685.2_02789
GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote	cenote	CDS	2980798	2981517	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C162	15417	16136	GCA_000153685_2_1_2695	GCA_000153685_2_1_2695	+	4408224	.	PRK14059	pyrimidine reductase family protein. 	MHYLTDGELPQLYDYPDDGTWLRANFISSLDGGATVDGTSGAMAGPGDRFVFNLLRELADVIVVGVGTVRIEGYSGVRMGVVQRQHRQARGQSEVPQLAIVTRSGRLDRDMAVFTRTEMAPLVLTTTAVADDTRQRLAGLAEVIACSGDDPGTVDEAVLVSQLAARGLRRILTEGGPTLLGTFVERDVLDELCLTIAPYVVGGLARRIVTGPGQVLTRMRCAHVLTDDSGYLYTRYVKT*	mmseqs_cdd	nonviral_gene	C162	16136	2965382	2981518	GCA_000153685.2|CP001664.1@region_2965383_2981518@tool_cenote_CDS_0024	persistent	direct	high	720	1.0	GCA_000153685.2_02790
GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote	cenote	CDS	3871599	3872207	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C224	1	609	GCA_000153685_2_1_3503	GCA_000153685_2_1_3503	+	4408224	.	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme [Cell wall/membrane/envelope biogenesis]. 	MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDVRASGLLPRWEQTQRFIGEMRGT*	mmseqs_cdd	nonviral_gene	C224	11214	3871599	3882813	GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote_CDS_0001	persistent	direct	high	608	0.998	GCA_000153685.2_03616
GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote	cenote	CDS	3872290	3872586	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C224	692	988	GCA_000153685_2_1_3504	GCA_000153685_2_1_3504	+	4408224	.	.	hypothetical protein	MGSGSRERIVEVFDALDAELDRLDEVSFEVLTTPERLRSLERLECLARRLPAAQHTLINQLDTQASEEELGGTLCCALANRLRITKPEAGRRSAEAKP*	.	hypothetical_protein	C224	11214	3871599	3882813	GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote_CDS_0002	persistent	direct	high	296	0.997	GCA_000153685.2_03617
GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote	cenote	CDS	3873638	3875029	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C224	2040	3431	GCA_000153685_2_1_3505	GCA_000153685_2_1_3505	+	4408224	.	PDB:4BQQ_A	Integrase	MRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVEYLDNDVSASTGKRRPAYEQMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQGRLVARLKGSVAAHETEHKKARQRRAARQKAERGHPNWSKAFGYLPGPNGPEPDPRTAPLVKQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYGPVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHLAGSYRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAAEAETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVFDGIPLGTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNWR*	common_virus_hmm	common_virus	C224	11214	3871599	3882813	GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote_CDS_0003	shell	direct	high	1391	0.999	GCA_000153685.2_03619
GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote	cenote	CDS	3875026	3875541	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C224	3428	3943	GCA_000153685_2_1_3506	GCA_000153685_2_1_3506	+	4408224	.	.	hypothetical protein	MSRHHNIVIVCDHGRKGDGRIEHERCDLVAPIIWVDEAQGWLPQAPAVATLLDDDNQPRAVIGLPPNESRLRPEMRRDGWVRLHWEFACLRYGAAGVRTCEQRPVRVRNGDLQTLCENVPRLLTGLAGNPDYAPGFAVQSDAVVVAMWLWRTLCESDTPNKLRATPTRGSC*	.	hypothetical_protein	C224	11214	3871599	3882813	GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote_CDS_0004	shell	direct	high	515	0.998	GCA_000153685.2_03620
GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote	cenote	CDS	3875597	3875818	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C224	3999	4220	GCA_000153685_2_1_3507	GCA_000153685_2_1_3507	+	4408224	.	.	hypothetical protein	MSTIYHHRGRVAALSRSRASDDPEFIAAKTDLVAANIADYLIRTLAAAPPLTDEQRTRLAELLRPVRRSGGAR*	.	hypothetical_protein	C224	11214	3871599	3882813	GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote_CDS_0005	shell	direct	high	221	0.995	GCA_000153685.2_03621
GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote	cenote	CDS	3875815	3876213	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C224	4217	4615	GCA_000153685_2_1_3508	GCA_000153685_2_1_3508	+	4408224	.	pfam10888	Protein of unknown function (DUF2742). Members in this family of phage proteins are the product of the gene phiRv1, however no function is known.	MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPMAGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVRRRGVYIPRAGVA*	mmseqs_cdd	nonviral_gene	C224	11214	3871599	3882813	GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote_CDS_0006	persistent	direct	high	398	0.997	GCA_000153685.2_03622
GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote	cenote	CDS	3876213	3877628	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C224	4615	6030	GCA_000153685_2_1_3509	GCA_000153685_2_1_3509	+	4408224	.	PFAM:PF04735.11	DNA-helicase	MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGWHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTAEPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAVRGADDFDD*	rep_hall_hmm	common_virus	C224	11214	3871599	3882813	GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote_CDS_0007	shell	direct	high	1415	0.999	GCA_000153685.2_03623
GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote	cenote	CDS	3877824	3878219	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C224	6226	6621	GCA_000153685_2_1_3510	GCA_000153685_2_1_3510	+	4408224	.	.	hypothetical protein	MTAVAITPASGGRHSVRFAYDSAIVSLIKSTIPAYARSWSAHTRCWFIDADWTPLLAAELRYHGHTVTGPADPAQQQCTDWAKALFRAVGPQRTPAVYRALSKVLHPDAPTGCPILQQQLNAARTALTNPA*	.	hypothetical_protein	C224	11214	3871599	3882813	GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote_CDS_0008	shell	direct	high	395	0.997	GCA_000153685.2_03625
GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote	cenote	CDS	3878233	3878505	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C224	6635	6907	GCA_000153685_2_1_3511	GCA_000153685_2_1_3511	+	4408224	.	.	hypothetical protein	MAETPDHAELRRRIADMAFNADVGMATCKRCGDAVPYIILPNLQTGEPVMGVADNKWKRANCPVDVGKPCPFLIAEGVADSTDDTIEVDQ*	.	hypothetical_protein	C224	11214	3871599	3882813	GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote_CDS_0009	shell	direct	high	272	0.996	GCA_000153685.2_03626
GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote	cenote	CDS	3878502	3878816	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C224	6904	7218	GCA_000153685_2_1_3512	GCA_000153685_2_1_3512	+	4408224	.	6LG3_A	PhiRv1 phage protein	MTPINRPLTNDERQLMHELAVQVVCSQTGCSPDAAVEALESFAKDGTLILRGDTENAYLEAGGNVLVHADRDWLAFHASYPGNDPLRDARPIEQDDDQGAGSPS*	hhsuite_tools	hypothetical_protein	C224	11214	3871599	3882813	GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote_CDS_0010	shell	direct	high	314	0.997	GCA_000153685.2_03627
GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote	cenote	CDS	3878897	3879367	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C224	7299	7769	GCA_000153685_2_1_3513	GCA_000153685_2_1_3513	+	4408224	.	CDD:COG3747	Small-Terminase	MPRPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLLRLASEFGLTPAAEQRLAVAPGDDGDGLNPFAPDR*	hallmark_hmm	common_virus	C224	11214	3871599	3882813	GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote_CDS_0011	shell	direct	high	470	0.998	GCA_000153685.2_03628
GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote	cenote	CDS	3879541	3880053	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C224	7943	8455	GCA_000153685_2_1_3514	GCA_000153685_2_1_3514	+	4408224	.	CDD:COG3740	head-maturation-protease	MAELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKVKLLVSHDARTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGDVLVRVEAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLLDW*	hallmark_hmm	common_virus	C224	11214	3871599	3882813	GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote_CDS_0012	persistent	direct	high	512	0.998	GCA_000153685.2_03629
GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote	cenote	CDS	3880061	3881482	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C224	8463	9884	GCA_000153685_2_1_3515	GCA_000153685_2_1_3515	+	4408224	.	CDD:COG4653	Major-Capsid-protein	MTEFDDIKNLSLPETRDAAKQLLDSVAGDLTGEAAQRFQALTRHAEELRAEQRRRGREAEEALRRYRAGELRVVPGAPTGGDDGDAPPGNSLRDTAFRTLDSCVRDGLMSSRAAETAETLCRTGPPQSTSWAQRWLAATGSRDYLGAFVKRVSNPVAGHTVWTDREAAAWREAAAVAAEQRAMGLVDTQGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEIWRGVTSEGAEARWYSEAQEVSDDSPALAQPAVPNYRGSCWIPFSIELEGDAASFVGEIGKILADSVEQLQAAAFVNGSGNGEPTGFVSALTGTSDQVVVGAGSEAIVAADVYALQSALPPRFQASAAFAANLSTINTLRQAETSNGALKFPSLHDSPPMLAGKSVLEVSHMDTVDSAVTATNHPLVLGDWKQFLIGDRVGSMVELVPHLFGPNRRPTGQRGFFAWFRVGSDVLVRNAFRVLKVETTA*	hallmark_hmm	common_virus	C224	11214	3871599	3882813	GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote_CDS_0013	persistent	direct	high	1421	0.999	GCA_000153685.2_03630
GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote	cenote	CDS	3881472	3882353	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C224	9874	10755	GCA_000153685_2_1_3516	GCA_000153685_2_1_3516	-	4408224	.	.	hypothetical protein	MDSFRPMGRKLSRRNKWRRWPPDRGAGAAESQAAAARGAGSWPPGSIFWFGAHGLQTRIRASFDENRHCYRRSPRHLRRHLPAAQTNRQRNPQRRQRNPPVRGETNGAAGRRIAELERPKAKERQREGGRLGASITNAGFGPMEPKPSQRHTDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSWNGRKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRKQTLLSAQPSASPPAPTGGSNESTTQPAASWRRGRPGTPKQRPPTPGPILPTR*	.	hypothetical_protein	C224	11214	3871599	3882813	GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote_CDS_0014	shell	direct	moderate	864	0.98	GCA_000153685.2_03631
GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote	cenote	CDS	3882402	3882812	GCA_000153685.2	CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685.2_CP001664.1	GCA_000153685.2|CP001664.1	GCA_000153685_2_1	GCA_000153685_2_1@C224	10804	11214	GCA_000153685_2_1_3517	GCA_000153685_2_1_3517	-	4408224	.	.	hypothetical protein	MTTTPARFNHLVTVTDLETGDRAVCDRDQVAETIRAWFPDAPLEVREALVRLQAALNRHEHTGELEAFLRISVEHADAAGGDECGPAILAGRSGPEQAAINRQLGLAGDDEPDGDDTPPWSRMIGLGGGSPAEDER*	.	hypothetical_protein	C224	11214	3871599	3882813	GCA_000153685.2|CP001664.1@region_3871600_3882813@tool_cenote_CDS_0015	shell	direct	high	410	0.998	GCA_000153685.2_03632