core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000176955.1|ADDO01000042.1@region_1_6078@tool_cenote	cenote	CDS	1	2418	GCA_000176955.1	ADDO01000042.1	GCA_000176955.1|ADDO01000042.1	GCA_000176955.1_ADDO01000042.1	GCA_000176955.1|ADDO01000042.1	GCA_000176955_1_22	GCA_000176955_1_22	2	2419	GCA_000176955_1_22_1	GCA_000176955_1_22_1	-	6078	.	PF05031.12	Iron Transport-associated domain	MKKKLWYILILFFILFPLNIFADNGIDIKNVNEVKQYYKELVPKIEGINKQESESIITEINKCQTPSLVKGCVEDYVFKDIDKIKEYEVVKSNKKFSECKEIFDILEYALTEDVKAVEEMEKMDLLTLDYVNGKIKLFNQIYKEFVEKYNKYKKAGLNNAPLIIDNLKNGEYVVDLSIYNDITGQMLGRRLPEPKLSMMDDAVYKLGKIVVKDGKKELIIKMIPLHQKLSGLHFSGYLLNLKVKDKHEKFNPASVDSRYEDYEDSLLKEFRKDANERYPKVIRLPLDNMETKTWEMYRDFKTKKNIEKYKELYNKKYTDAKSIQVRVFVPIMEHIQKDMGDQFAKPTIFTNSIEKYNPGNRDTLKNKIATVNINKYKDNSNKDKVDELKKILEKAKVASDSFILTDEEVQEYINKIDNLVKLLGNDASKPSPETKIDYKKLPDGEYRVIAEIRHASKQGALSMADGALVKENTKVIVSKGKYYLQIEMKALEADLNGTKFKGYLGDLLYINGEKYTQSEIINYHDDKDDYFEILKNYYKRKYSLNDKELDNLKYPKTLRYPIDIPTSEIQETNVKVFVPVMEGLSSGLGTKDAKPTILWDTLNYNLDKVKIFGKERINKIENLENKDEIIKAIDNASDIKMVFKILNDLKVPNFGNADKPNNTNNDSNSSNISELRGTLKDALNLANAVSASKGADSFLTIAIANANNVLANPKASASEIRSAINNLNTASARNNPTGSANNNANQNNGNNPFNNNSWGNNNNSWGNNSSWGNGNNGNNPFHNNSSWGGNSQWGGNNNQNSGPVTI	hhsuite_tools	hypothetical_protein	NaN	.	0	6078	GCA_000176955.1|ADDO01000042.1@region_1_6078@tool_cenote_CDS_0001	cloud	ambiguous	low	456	0.189	GCA_000176955.1_00837
GCA_000176955.1|ADDO01000042.1@region_1_6078@tool_cenote	cenote	CDS	2516	3133	GCA_000176955.1	ADDO01000042.1	GCA_000176955.1|ADDO01000042.1	GCA_000176955.1_ADDO01000042.1	GCA_000176955.1|ADDO01000042.1	GCA_000176955_1_22	GCA_000176955_1_22	2517	3134	GCA_000176955_1_22_2	GCA_000176955_1_22_2	-	6078	.	PF05031.12	Iron Transport-associated domain	MKNISKNLVVAGLGLAIIASGSVFAEGGKALSDNNSLFSGNLVKEASLRDNYLDYKNLPQGEYKVNMKVMNANPNKKNHESMMNGAVIAEKTKVIVDRAGNYYLDITLQSILKEYNNEKVIGYLDWLKYYDDEGNEQPSTVLSWQSDLKGNKHPKEIKFPISKPSEIVQKEYVQVYSKAMAEKAMKGAQDACPTIDWSNFSRISR*	hhsuite_tools	hypothetical_protein	NaN	.	0	6078	GCA_000176955.1|ADDO01000042.1@region_1_6078@tool_cenote_CDS_0002	cloud	direct	high	617	0.998	GCA_000176955.1_00838
GCA_000176955.1|ADDO01000042.1@region_1_6078@tool_cenote	cenote	CDS	3149	5794	GCA_000176955.1	ADDO01000042.1	GCA_000176955.1|ADDO01000042.1	GCA_000176955.1_ADDO01000042.1	GCA_000176955.1|ADDO01000042.1	GCA_000176955_1_22	GCA_000176955_1_22	3150	5795	GCA_000176955_1_22_3	GCA_000176955_1_22_3	-	6078	.	PFAM:PF10145.8	tail-tape-measure-protein-	MKKIKSFIFFSLLIFILTGQTFAKTKLDYRNLPDGEYSVKIEVRKDFYIKKPKLSMMDDAVEKPASIVVKNGRYFLKFKILPLELAQFKAKGYLGDINYIDSKNNENKVEVLKYYDFEDELSKKYNLKYPETIMYPIEKENISKIQETRVKVFVPIMEEIGKKGEEMGTQYARPTIYWDTLQEKNSNEFVNINLADTKFAQPKLRKIVDQVGKIVEYQGKKYLYINFFNLKLDSSGYDDGTETLEYSYGEDQTRYSLQSKVIEEGKIGGRYQLSEAYIPIDGAEEIYLYGKFQTTKYKQERYEQSAKINLSLLTPAKSNSDDLKLEFVKQDDVSVKKNKSNKLPYDFNIGGVLYSPYTSIDGNKFRLTRDGENVRFIFNKNSFITSNIRNIKYTLDGSEPNESSFDADLSFYNQSKFHDDSYYNVEIDPFNMTNISSMGGNVTLKVKAFDKNGMGVGNTQTYVIPYDKETISEVKGDTMPDLGCPMILSTGKKAALPKNSMIYAEELSDYNMQEELNNLAEEEGIYNPSLVKLSLYDGNKPLELNYNGSWNANVCPLATVKLKGNNLGNYFAYEYKDGKLIPLATKASPRELAFNISSNQGYYVIGQVDKNSVRKMAINLLSNKIKEAEAYLNSGEVNLYSLILEGDIEKAKNDLGKFKTPYICLSGVEKIERTMNLAKSSGDESPEFYKEKAKVLVQVANEILNKNILNKSSENELQGTRDRLQYAISNNDLNSLRDSIKNLDKALNNISYKGKGQAVNINILKENSDQRSMASNVFENQGKLLQIDGKYYLELGLKTMYFGNIRAHLLDLEVFENGLGTGLLNLTPISKFSDTGLQGVEFYNKKILIELGNRPSSEYYIRVKNDAMGNARPVARLIINY*	hallmark_hmm	common_virus	NaN	.	0	6078	GCA_000176955.1|ADDO01000042.1@region_1_6078@tool_cenote_CDS_0003	cloud	direct	high	2645	1.0	GCA_000176955.1_00839
GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote	cenote	CDS	77976	78746	GCA_000176955.1	ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955.1_ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955_1_34	GCA_000176955_1_34@C9	1	771	GCA_000176955_1_34_78	GCA_000176955_1_34_78	-	86173	.	PDB:4XLN_L	DNA-directed-RNA-polymerase-subunit	MKDNNNLFERYSKNKNDISLRNKIVLDNLSLVPYTINHYHLFIDGVHDYEEMLQDGYIALIKAVESFDYRLGFKFSSYAIKCILSLTRTRIDYNKDLSLNTPINEGAETEIEMIDTIEDESIDIEKDIINENFYREIKKNLSFNLNDIELKIIKAIYGIDQEVRSYKDLSFILDLDINYLKKIKRQAENKIRKSSYFKKLYNERDPISYYPKMMFDNDKSSPTNKINSPVERIVIEKQEQERYIIKNTLKHIKSTS*	common_virus_hmm	common_virus	C9	8198.0	77976	86174	GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote_CDS_0001	cloud	direct	high	770	0.999	GCA_000176955.1_01216
GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote	cenote	CDS	78730	79044	GCA_000176955.1	ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955.1_ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955_1_34	GCA_000176955_1_34@C9	755	1069	GCA_000176955_1_34_79	GCA_000176955_1_34_79	-	86173	.	PFAM:PF05263.10	transcriptional-regulator	MEVRNLNEYKYLCLEKEHLINDIEHQKELLKKLESRFERCNNEIKEIDDFLNSIDDAIIKNIVIMKFIDGRTWIDISLELGSSSESYSRNLLNRYLDKYHERQQ*	phrogs_hmm	hypothetical_protein	C9	8198.0	77976	86174	GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote_CDS_0002	cloud	direct	high	314	0.997	GCA_000176955.1_01217
GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote	cenote	CDS	79087	79923	GCA_000176955.1	ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955.1_ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955_1_34	GCA_000176955_1_34@C9	1112	1948	GCA_000176955_1_34_80	GCA_000176955_1_34_80	-	86173	.	PDB:2XD8_E	Major-Capsid-protein	MAIDLAAQYLPYVDEQLTNESKISLITNKDFEFTGAKTVKIYKINTSKMNDYDRNGEGKYQGSRYGAIANLGGSTEEFTLSQDRSFTFAIDKLDKDETKGSLESASALARQNREVIIPEVDKYTIEKIIAGAGTKAEKKLTATNIYDEILNANTVLDNNLVPDGNRYLLVTPDVYLLIKKNKDFILSTDVGQEMRVKGVIASIDGLTVIKVPKIVVPEDFGFLLVHPCATVAPVKLQDYKVHQDPPGINGNLVEGRFCYDAFVLDNKKMAIYYNKMGA*	hallmark_hmm	common_virus	C9	8198.0	77976	86174	GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote_CDS_0003	cloud	direct	high	836	0.999	GCA_000176955.1_01218
GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote	cenote	CDS	79941	80432	GCA_000176955.1	ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955.1_ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955_1_34	GCA_000176955_1_34@C9	1966	2457	GCA_000176955_1_34_81	GCA_000176955_1_34_81	-	86173	.	PDB:6B0X_d	capsid-scaffolding-protein	MEDLKNKEMELENSNNEDIENSNNEDIEQESNINEKSYSEDEVNEIVQRRLARERKKFNKILDSDEFDKELIKREKAISLREMKADAKEFLSENNIPPVFIDLVNFDDRQKMEDSLKAIENIKSKYIEPWISEEVRKRFAGKTPKISVCNNFKSDPLEQAFKL*	hallmark_hmm	common_virus	C9	8198.0	77976	86174	GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote_CDS_0004	cloud	direct	high	491	0.998	GCA_000176955.1_01219
GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote	cenote	CDS	80840	81208	GCA_000176955.1	ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955.1_ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955_1_34	GCA_000176955_1_34@C9	2865	3233	GCA_000176955_1_34_82	GCA_000176955_1_34_82	-	86173	.	.	hypothetical protein	MNLINIFEKDSINNNEIKDFFEDFDFCIKYLGNTRNYEIAFVKKDFDLEDNDIVVVIEYRDFFNVVGELIKNTNITLRRVIKIGDQMQLRDIQNIYAPINIGSSEEVYKILGKAIYRLCLFD*	.	hypothetical_protein	C9	8198.0	77976	86174	GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote_CDS_0005	cloud	direct	high	368	0.997	GCA_000176955.1_01220
GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote	cenote	CDS	81225	82046	GCA_000176955.1	ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955.1_ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955_1_34	GCA_000176955_1_34@C9	3250	4071	GCA_000176955_1_34_83	GCA_000176955_1_34_83	-	86173	.	PDB:4M4W_K	Replicative-helicase,-DNA-primase	MNQEINYQKILANLTSEQPFDRKEHQKQAVLREMNSFNETPGNKTHCKRCKGKGYIMGVIRKFDSYYTIVKECDCMANIKACREVKNSGMAQLLNYSFNNYKVKSNWQADIKRRAMANANTKDWFFIGGQSGSGKTHICCAIANYQRRKGVRVKYIVWTDTINKLKDFEDDSYMSELKKVECLYIDDLFKKIGTKYNDGLTSSDITKTWELINYRNLNNLKTIISSEMTLIDILNVDESLGSRIKQSAKNYIVTVPGDVRKNMRINQMSFMDN*	common_virus_hmm	common_virus	C9	8198.0	77976	86174	GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote_CDS_0006	cloud	direct	high	821	0.999	GCA_000176955.1_01221
GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote	cenote	CDS	81997	82776	GCA_000176955.1	ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955.1_ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955_1_34	GCA_000176955_1_34@C9	4022	4801	GCA_000176955_1_34_84	GCA_000176955_1_34_84	-	86173	.	PFAM:PF07261.10	Replication-initiation-and-membrane-attachment	MGTNKRFYWIKLNTNFFIQREVKSIRRTENGLLYIVIYLKLLLLSANTGGLLKFENTEDSLVEELSIEIDEEPEDVKNAIEVLQKKNLITISSNDEFFLNKAPDMVGSETAAAERMRKSRAKKKELEKNVTMLPNVTNCYTEIDIDKEIDIDKEIDIDKRDKRLDDDKAEYVTKINGLIKNKISSSSLENFINNYGVDTLKSLIDEIKVSDYLKENINFNHLSDDFINKAISGKYRTFKNEVNNEPRNKLPKDFSQFNL*	rep_hall_hmm	common_virus	C9	8198.0	77976	86174	GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote_CDS_0007	cloud	direct	high	779	0.999	GCA_000176955.1_01222
GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote	cenote	CDS	82927	83136	GCA_000176955.1	ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955.1_ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955_1_34	GCA_000176955_1_34@C9	4952	5161	GCA_000176955_1_34_85	GCA_000176955_1_34_85	-	86173	.	.	hypothetical protein	MATLVKVDVVSDVLCISKNKAYQVMRMINKELEDKGFITIQGRVPLDYLKMRFNLCDEDFNKEVVKDVN*	.	hypothetical_protein	C9	8198.0	77976	86174	GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote_CDS_0008	cloud	direct	high	209	0.995	GCA_000176955.1_01223
GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote	cenote	CDS	83153	83362	GCA_000176955.1	ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955.1_ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955_1_34	GCA_000176955_1_34@C9	5178	5387	GCA_000176955_1_34_86	GCA_000176955_1_34_86	-	86173	.	PFAM:PF10078.8	transcriptional-repressor	MNDIILKLNKRLIKKKLIELNLTQSEFANKNNIAQSTLSNVLNGRQATTKTLNKIADGLGISVIELLED*	phrogs_hmm	hypothetical_protein	C9	8198.0	77976	86174	GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote_CDS_0009	cloud	direct	high	209	0.995	GCA_000176955.1_01224
GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote	cenote	CDS	83381	83578	GCA_000176955.1	ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955.1_ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955_1_34	GCA_000176955_1_34@C9	5406	5603	GCA_000176955_1_34_87	GCA_000176955_1_34_87	-	86173	.	PFAM:PF10078.8	transcriptional-repressor	MKIKEFEVNLMLAEKNLRQSDLAKLSGISRVTINSVLNGKTANARTIHAIAKALNVPVRQIITVD*	phrogs_hmm	hypothetical_protein	C9	8198.0	77976	86174	GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote_CDS_0010	cloud	direct	high	197	0.995	GCA_000176955.1_01225
GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote	cenote	CDS	83738	84445	GCA_000176955.1	ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955.1_ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955_1_34	GCA_000176955_1_34@C9	5763	6470	GCA_000176955_1_34_88	GCA_000176955_1_34_88	+	86173	.	COG1395	Predicted transcriptional regulator [Transcription]. 	MTLGEKIRKYRILNNLTMKELSEKLGMSISAIQKYENGTVIPKTDIIQKISKILNVPINKLLEETSAKNDKEDMILEKIIELTKYDQIKWIKCEDKDIKNKYKLYEDDFLEISKIIDDSIGYSSYKSELDIENDIKELSIKIMKNGFITNVKDTLYILYDEGYVDFQDKKIYELKAFQYKYHDFNYLIEFTNRELLTNLFSIVNEKANINDGDIDEILLDLDKDLNNLIDDTYGF*	mmseqs_cdd	nonviral_gene	C9	8198.0	77976	86174	GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote_CDS_0011	cloud	direct	high	707	0.999	GCA_000176955.1_01226
GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote	cenote	CDS	84600	85682	GCA_000176955.1	ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955.1_ADDO01000023.1	GCA_000176955.1|ADDO01000023.1	GCA_000176955_1_34	GCA_000176955_1_34@C9	6625	7707	GCA_000176955_1_34_89	GCA_000176955_1_34_89	+	86173	.	PDB:1Z19_B	Integrase	MTSKRMKNNFNKWYCSFRYVNLDGETKQKKKEGFSTKKEADEYERNFLNNIKFNPEMNFKSLYKMYLEDMKPRIKEHTLASKEYITENKILPYFKDMKISGIGSIEVQRWQNLLLQAKNPKTNKPYAPTYLKTINNQLTAIFNYAVKFHNLKNNPVHKVGTIGEKNAPEKEIWSIEEFNEFINLVEDKTLHLGFNILYWSGCRIGELLALTWNDIDFKNNIINIDKSYQRLNCKDVITEPKTKKSIRKITVVSDVIKEIESYKKLFYKPGDDDRIFNCTKHKFEHAIINICKRNNLKRIRIHDLRHSHASLLLNEGINIVALSKRLGHEKVSTTLNTYSHMIPSEDKILNVMEKLSVTKS*	common_virus_hmm	common_virus	C9	8198.0	77976	86174	GCA_000176955.1|ADDO01000023.1@region_77977_86174@tool_cenote_CDS_0012	cloud	direct	high	1082	0.999	GCA_000176955.1_01227