core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000183605.2|AENO01000028.1@region_1_8115@tool_cenote	cenote	CDS	2	277	GCA_000183605.2	AENO01000028.1	GCA_000183605.2|AENO01000028.1	GCA_000183605.2_AENO01000028.1	GCA_000183605.2|AENO01000028.1	GCA_000183605_2_30	GCA_000183605_2_30	3	278	GCA_000183605_2_30_1	GCA_000183605_2_30_1	-	8115	.	pfam19514	MobC-like protein. This family consists of several bacterial MobC-like, mobilisation proteins. MobC proteins belong to the group of relaxases. Together with MobA and MobB they bind to a single cis-active site of a mobilising plasmid, the origin of transfer (oriT) region.	MNGKIERWDRWDTRLPNPKDQQRAIDLFHKSGVATKSDFVRARILGEHFKVITVDKSAVEYYRKLSELTAQIHKIGVLYNQAVRAINSYHSV	mmseqs_cdd	nonviral_gene	NaN	.	0	8115	GCA_000183605.2|AENO01000028.1@region_1_8115@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_000183605.2|AENO01000028.1@region_1_8115@tool_cenote	cenote	CDS	886	1677	GCA_000183605.2	AENO01000028.1	GCA_000183605.2|AENO01000028.1	GCA_000183605.2_AENO01000028.1	GCA_000183605.2|AENO01000028.1	GCA_000183605_2_30	GCA_000183605_2_30	887	1678	GCA_000183605_2_30_2	GCA_000183605_2_30_2	+	8115	.	cd02042	partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	MDRPNNRPLYLGFASQKGGVGKSTLAEVLASILYYEKDIPLVVVDCDGTQESFFKLRERDRDLIGTSPDIGKALHERLAQYGKKSYQIIRSNLEQAISNTEQYLSKAPIAPQLVIFDFPGHVATSAMMELSIMMDYIISPIEADPQSLASSFAYAKTIQELGVGFAESQIQDLFLLWNKVNRSASTMVIDLFSQHAQEQGLKILDARIYHSVRFSRELAQGGVKGVFRCSYLPPATTLRPQTGVDEWVEEVMQKLGLQKGTSV*	mmseqs_cdd	common_virus	NaN	.	0	8115	GCA_000183605.2|AENO01000028.1@region_1_8115@tool_cenote_CDS_0002	shell	direct	high	791	0.999	GCA_000183605.2_01112
GCA_000183605.2|AENO01000028.1@region_1_8115@tool_cenote	cenote	CDS	1674	2201	GCA_000183605.2	AENO01000028.1	GCA_000183605.2|AENO01000028.1	GCA_000183605.2_AENO01000028.1	GCA_000183605.2|AENO01000028.1	GCA_000183605_2_30	GCA_000183605_2_30	1675	2202	GCA_000183605_2_30_3	GCA_000183605_2_30_3	+	8115	.	pfam11888	Protein of unknown function (DUF3408). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 128 to 160 amino acids in length.	MSSLKEQRERLLQAKMREMANIGVTKRTADNIPDFDEPIDLDEEPTLEENPTLEAECNAVSETEETTASIPTTSSQASQRHSSKKKSTPRSCSLTLEFAAYEERFLTSVRDGRNKSGFSIHTEVLQLLRNVVSDLRVETSITSYIENIILDHLKTHQELLNQIASQRRRDKTIDL*	mmseqs_cdd	nonviral_gene	NaN	.	0	8115	GCA_000183605.2|AENO01000028.1@region_1_8115@tool_cenote_CDS_0003	shell	direct	high	527	0.998	GCA_000183605.2_01113
GCA_000183605.2|AENO01000028.1@region_1_8115@tool_cenote	cenote	CDS	2198	2953	GCA_000183605.2	AENO01000028.1	GCA_000183605.2|AENO01000028.1	GCA_000183605.2_AENO01000028.1	GCA_000183605.2|AENO01000028.1	GCA_000183605_2_30	GCA_000183605_2_30	2199	2954	GCA_000183605_2_30_4	GCA_000183605_2_30_4	+	8115	.	PF13498.6	Domain of unknown function (DUF4122)	MIEETLRCLLLLLGIVWVIFGITYWRRLLNSSKQNSIRKATAKKEKTEKADSNQERKELVRDELVGKSKPFVSSSFPMVPKSSSSEKAVDNPATFAELDSDKSTPRDDATEPLEAESETIPEAENEIQVAYTMEDPDEESILREELQIASEALPELSPTAILARDLSRISQWSKQEDSLTNENEEEVCQTLRTLRGTELMDRLKEYTLQVEEAHRNLFAALRKAEELEEEPAPSQVEAEAGEEEKPLSYYL*	hhsuite_tools	hypothetical_protein	NaN	.	0	8115	GCA_000183605.2|AENO01000028.1@region_1_8115@tool_cenote_CDS_0004	shell	direct	high	755	0.999	GCA_000183605.2_01114
GCA_000183605.2|AENO01000028.1@region_1_8115@tool_cenote	cenote	CDS	3008	3325	GCA_000183605.2	AENO01000028.1	GCA_000183605.2|AENO01000028.1	GCA_000183605.2_AENO01000028.1	GCA_000183605.2|AENO01000028.1	GCA_000183605_2_30	GCA_000183605_2_30	3009	3326	GCA_000183605_2_30_5	GCA_000183605_2_30_5	+	8115	.	CDD:PHA00025	major-coat-protein	MNRRMISKERLAMLALTLMMTGATAFAQGNGMAGINEATKMVTSYFDPATKLIYAIGAVVGLIGGVKVYNKFSSGDPDTSKTAASWFGACIFLIVAATILRSFFL*	hallmark_hmm	common_virus	NaN	.	0	8115	GCA_000183605.2|AENO01000028.1@region_1_8115@tool_cenote_CDS_0005	shell	direct	high	317	0.997	GCA_000183605.2_01115
GCA_000183605.2|AENO01000028.1@region_1_8115@tool_cenote	cenote	CDS	3325	3651	GCA_000183605.2	AENO01000028.1	GCA_000183605.2|AENO01000028.1	GCA_000183605.2_AENO01000028.1	GCA_000183605.2|AENO01000028.1	GCA_000183605_2_30	GCA_000183605_2_30	3326	3652	GCA_000183605_2_30_6	GCA_000183605_2_30_6	+	8115	.	PF13571.6	Domain of unknown function (DUF4133)	MASWEVNKGVGRTVEFKGLKAHYLFLFAGGLLGIFILVVILYLCGISQIICLGIGVVGATVVVWQTFAMNRKYGQYGLMKRGAIRRHPRYLLNRRSVYPLFHQLNSSR*	hhsuite_tools	nonviral_gene	NaN	.	0	8115	GCA_000183605.2|AENO01000028.1@region_1_8115@tool_cenote_CDS_0006	shell	direct	high	326	0.997	GCA_000183605.2_01116
GCA_000183605.2|AENO01000028.1@region_1_8115@tool_cenote	cenote	CDS	3648	6167	GCA_000183605.2	AENO01000028.1	GCA_000183605.2|AENO01000028.1	GCA_000183605.2_AENO01000028.1	GCA_000183605.2|AENO01000028.1	GCA_000183605_2_30	GCA_000183605_2_30	3649	6168	GCA_000183605_2_30_7	GCA_000183605_2_30_7	+	8115	.	TIGR03783	Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4. [Cellular processes, DNA transformation]	MMRNRSKITTLESKFPLLSVEHGCIVSKDADVTVAFRVELPELFTVTSAEYETMHSTWHKAIKVLPNFTIVHKQDWFIKECYHTTCKRGQEKPLSFLARASERHFNERPYLNHTVYLFITKSNRQRMAQQSNFSTLCRGHLLPKEITNEEEMVKFMEAVDQFERIINESELIKLTRMSEAELVGSREQAALLDRYFSLSDSRHSTLEDIRLGADLVRVGDNMLCLHTLSDTDDLPTTVSTDGRYERLSTDRSDCRLSFASPVGLMLPCNHIYNQYLFIEDSEANLQRFEKQARNMHSLARYSRSNQINEEWIQEYLNTAHSQGLTSIRAHFNVLAWSDDEEELRQVKNDVGSALALMECRPRHNTIDTATLYWAAIPGNAGDFPAEESFYTFIEPALCFFTAETNYKDSLSPFGIKMADRLSGKPIHLDISDLPMKQGIITNRNKFILGPSGSGKSFFTNHMVRQYYEQGAHVLLVDTGNSYQGLCELIHRKTKGEDGVYFTYTHDHPISFNPFYTDDKFFDVEKRESICTLLMTLWKSADERVTKTEAGELGSAVNAYIELICSDASIVPNFNSFYEYLRDVYRKDMEQRDIKVTLSDFNINNLLTTLKQYYKGGRYDFLLNSDKNIDLLSKRFIVFEIDQVKDNKDLFPVVTIIIMEAFINKMRRLKGIRKMILIEEAWKAIASENMADYIKYLYKTVRKYFGEAIVVTQEVDDIISSPVVKESIINNSDCKILLDQRKYMTKFDGIQSMLGLSEKEKSQILSINQNNDPHRLYKEVWVGLGGMQSAVYATEVSMEEYLTYTTEEREKLEVMQRAEQLGGDIESAIRQLAIEKRDKQ*	mmseqs_cdd	nonviral_gene	NaN	.	0	8115	GCA_000183605.2|AENO01000028.1@region_1_8115@tool_cenote_CDS_0007	shell	direct	high	2519	1.0	GCA_000183605.2_01117
GCA_000183605.2|AENO01000028.1@region_1_8115@tool_cenote	cenote	CDS	6194	6823	GCA_000183605.2	AENO01000028.1	GCA_000183605.2|AENO01000028.1	GCA_000183605.2_AENO01000028.1	GCA_000183605.2|AENO01000028.1	GCA_000183605_2_30	GCA_000183605_2_30	6195	6824	GCA_000183605_2_30_8	GCA_000183605_2_30_8	+	8115	.	PF13605.6	Domain of unknown function (DUF4141)	MKKYLLMALFAMSLFIPQAHAQWVVTDPGNFAGNIANSIKEIATASKTVKNTLSGFKEVEKLYNDTKKYYDALKQVNNLIGDAYKVKECILMVGDISEIYVTSYKKMLADPNFRPTELAAMAAGYAKLLELSGESLKELKSVAKSKVFSMNDSERMQMIDRIYTTLREYRSIVSYYTRKNISVSYVRAHEKNDLASVKALYGNPESRYW*	hhsuite_tools	nonviral_gene	NaN	.	0	8115	GCA_000183605.2|AENO01000028.1@region_1_8115@tool_cenote_CDS_0008	shell	direct	high	629	0.998	GCA_000183605.2_01118
GCA_000183605.2|AENO01000028.1@region_1_8115@tool_cenote	cenote	CDS	6856	7893	GCA_000183605.2	AENO01000028.1	GCA_000183605.2|AENO01000028.1	GCA_000183605.2_AENO01000028.1	GCA_000183605.2|AENO01000028.1	GCA_000183605_2_30	GCA_000183605_2_30	6857	7894	GCA_000183605_2_30_9	GCA_000183605_2_30_9	+	8115	.	TIGR03782	Bacteroides conjugative transposon TraJ protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. This family is related conjugation system proteins in the Proteobacteria, including TrbL of Agrobacterium Ti plasmids and VirB6. [Cellular processes, DNA transformation]	MDFASLHELLRSTYQEMMPLCGEMTGIAKGIAGLGALFYVAVRVWSSLSRAEPIDLFPLLRPFVLGFCIMFFPTIVLGTMNTILSPVVQGTERMVNKQTVQLDKLIAKRDKLQEAAYLRNPETAYLVSNEAFDQKIEEMGIIGPSDAVTIAGMYAERAAYKTKQWLMKQLHDLIELLYHAAALIIDTLRTFFLIVLSILGPIVFGIAVWDGLSGSLTAWFSRYISVYLWLPVSSVLSALLTKIQVLMVQKDIAALSDPNYLPDSGSWYYIVFFLIGIVGYFCVPTVAGWIIEAGGGIGAYGRNVNQTAQRGAQGAYTGGKAIAGATGSIAGNVGGRIKGALIKGK*	mmseqs_cdd	nonviral_gene	NaN	.	0	8115	GCA_000183605.2|AENO01000028.1@region_1_8115@tool_cenote_CDS_0009	shell	direct	high	1037	0.999	GCA_000183605.2_01119
GCA_000183605.2|AENO01000003.1@region_1_1792@tool_cenote	cenote	CDS	1	858	GCA_000183605.2	AENO01000003.1	GCA_000183605.2|AENO01000003.1	GCA_000183605.2_AENO01000003.1	GCA_000183605.2|AENO01000003.1	GCA_000183605_2_53	GCA_000183605_2_53	2	859	GCA_000183605_2_53_1	GCA_000183605_2_53_1	+	1792	.	PDB:3F3B_A	head-closure-knob	DDLNAVPYGTELTVEAAPAEGYELTALTANGKDILSSKKFTVQGATEVKATFTKKTFAVTFDKEGEGTITATGASDLNAVAYGTELTINATPATGYELTALTANGTDILATKKIVVTDNVTVKATFEKKTFAVTLTSNEHGEITIVEPVDLKAVPYGTTLTVKATGKNAQCVLTELTANGEDILATKSFVVTDVTEVKATFVDHTGVETTVTQQVKLYPNPATDYVIVKGIAPASEVMLHSMTGELLCAMQADAEGHLQIDLTALSDGVYLLVGTGWQERLVVKK*	hallmark_hmm	common_virus	NaN	.	0	1792	GCA_000183605.2|AENO01000003.1@region_1_1792@tool_cenote_CDS_0001	cloud	direct	moderate	716	0.834	GCA_000183605.2_01753