core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	genomad_gene	genomad_length	genomad_strand	genomad_gc_content	genomad_genetic_code	genomad_rbs_motif	genomad_marker	genomad_evalue	genomad_bitscore	genomad_uscg	genomad_plasmid_hallmark	genomad_virus_hallmark	genomad_taxid	genomad_taxname	genomad_annotation_conjscan	genomad_annotation_amr	genomad_annotation_accessions	genomad_annotation_description	genomad_element_name_std	genomad_element_name_orig	genomad_element_gene_wrt_to_contig	genomad_element_gene_wrt_to_element	genomad_element_gene_start	genomad_element_gene_end	genomad_protein_translation	genomad_phage_region_id	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	genomad	CDS	119259	119753	GCA_000212515.2	AFGR01000002.1	GCA_000212515.2|AFGR01000002.1	GCA_000212515.2_AFGR01000002.1	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162_127	495	-1	0.315	11	AGGA	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	GCA_000212515.2|AFGR01000002.1	127	1	1	495	MNRIKQLRKENNLTQRELANETKIPYRTIQRWENGETDIKSDAAQVLADYFGVSIPHLLGYSDLIADTDSDIKAMAYSHLLTFVDEKQIKEFEKEFIRANDNSDTFGDLGSGEKALEKYYQALCYLVPPFRDILARYSFLSLDEKKSVYNIIVGLSNNLSKENK	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad_CDS_0001	cloud	direct	high	495	1.0	GCA_000212515.2_00976
GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	genomad	CDS	119824	120006	GCA_000212515.2	AFGR01000002.1	GCA_000212515.2|AFGR01000002.1	GCA_000212515.2_AFGR01000002.1	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162_128	183	1	0.377	11	GGAGG	GENOMAD.081367.VV	3.71e-19	81	0	0	1	1246	Caudoviricetes	NA	NA	PF06892;TIGR00721;COG3620;K22299	DNA-binding protein, Tfx family	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	GCA_000212515.2|AFGR01000002.1	128	2	566	748	MLITLSLAEKVRIKRARLQLTKKAVSEQLGIKSQTLTKVENGNYDASKRIYESVMTWLVE	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad_CDS_0002	cloud	direct	high	183	1.0	GCA_000212515.2_00977
GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	genomad	CDS	120217	120483	GCA_000212515.2	AFGR01000002.1	GCA_000212515.2|AFGR01000002.1	GCA_000212515.2_AFGR01000002.1	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162_129	267	1	0.345	11	GGAGG	GENOMAD.167683.VP	4.922e-14	68	0	0	0	1246	Caudoviricetes	NA	NA	PF09035;COG3311;TIGR01764	Predicted DNA-binding transcriptional regulator AlpA	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	GCA_000212515.2|AFGR01000002.1	129	3	959	1225	MEILSKEIQLQGLQLLKQTLETLVELEKQRSSKLDLISRKELMDLLGISATTLDNWEDLALKRYQTPMDGAKKVFYRLSDVYLFLAIK	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad_CDS_0003	shell	direct	high	267	1.0	GCA_000212515.2_00978
GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	genomad	CDS	120494	120646	GCA_000212515.2	AFGR01000002.1	GCA_000212515.2|AFGR01000002.1	GCA_000212515.2_AFGR01000002.1	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162_130	153	1	0.320	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	GCA_000212515.2|AFGR01000002.1	130	4	1236	1388	MKIVTFKPTKQIDGGFYLPGIDILFVSDKADAKSTEDVILFISRNGLNKS	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad_CDS_0004	shell	direct	high	153	1.0	GCA_000212515.2_00979
GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	genomad	CDS	120816	121112	GCA_000212515.2	AFGR01000002.1	GCA_000212515.2|AFGR01000002.1	GCA_000212515.2_AFGR01000002.1	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162_131	297	1	0.387	11	AGGAGG	GENOMAD.205814.VP	4.569e-50	172	0	0	0	1246	Caudoviricetes	NA	NA	COG3646;TIGR02681	Phage regulatory protein Rha	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	GCA_000212515.2|AFGR01000002.1	131	5	1558	1854	MELVYMDGKKEPYTTSEIIAECADVQHHTITRLIRENKVDFEELGILGFKIHKLDTRGQPKKSYILNEQQATLLITYLKNTEAVRQFKLNLVKAFFKR	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad_CDS_0005	shell	direct	high	297	1.0	GCA_000212515.2_00980
GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	genomad	CDS	121283	121483	GCA_000212515.2	AFGR01000002.1	GCA_000212515.2|AFGR01000002.1	GCA_000212515.2_AFGR01000002.1	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162_132	201	1	0.363	11	AGGAG	GENOMAD.072874.VV	2.077e-27	105	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	GCA_000212515.2|AFGR01000002.1	132	6	2025	2225	MTLDLDNMTQAEFDEAMAEIQLQSPNIFQLISDFVNKKVTSVEIDDLLNMKRAEQVAYIKNYKARA	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad_CDS_0006	cloud	direct	high	201	1.0	GCA_000212515.2_00981
GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	genomad	CDS	121485	121700	GCA_000212515.2	AFGR01000002.1	GCA_000212515.2|AFGR01000002.1	GCA_000212515.2_AFGR01000002.1	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162_133	216	1	0.426	11	GGAG/GAGG	GENOMAD.068563.VV	4.135e-38	136	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	GCA_000212515.2|AFGR01000002.1	133	7	2227	2442	MNELDISNTQAVFVTVILIGLLLYLNHRDRKKSAQLERENQQTIETPSEDLNPDYGRYIQLAGVDVWGRIE	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad_CDS_0007	shell	direct	high	216	1.0	GCA_000212515.2_00982
GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	genomad	CDS	121775	122584	GCA_000212515.2	AFGR01000002.1	GCA_000212515.2|AFGR01000002.1	GCA_000212515.2_AFGR01000002.1	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162_134	810	1	0.365	11	GGAG/GAGG	GENOMAD.189730.VP	4.398e-14	75	0	0	1	1246	Caudoviricetes	NA	NA	PF14297;TIGR01714;K02315	phage replisome organizer, putative, N-terminal region	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	GCA_000212515.2|AFGR01000002.1	134	8	2517	3326	MAKTKVYFWLKIDKKFFDNIFIKRLKTVPGGYTMTVIYIRLMLESLESDCILYYEGYFNNLKEELALKLDVSEDDIDMTMAYFTKCGLIQIDEDKNAELPQAKAMVMSETNWASYKREQRKKGKLEEVQPSLTFSNSCPTEIEKELEIEVDKEQSPTPSTINQDFVNLYKSFEAETGKALSPLQIQELQYMLEDFSPELIHEALKEAVSQGKANFAYIKAILNRWKQDNLLTVELVRNSRAAREAKKQQTNQLEPTSYEDWIPTQEKPF	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad_CDS_0008	cloud	direct	high	810	1.0	GCA_000212515.2_00983
GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	genomad	CDS	122596	123492	GCA_000212515.2	AFGR01000002.1	GCA_000212515.2|AFGR01000002.1	GCA_000212515.2_AFGR01000002.1	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162_135	897	1	0.342	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	GCA_000212515.2|AFGR01000002.1	135	9	3338	4234	MKSLQSSLGNIETFKLDELCPKHEIQLTQIKGERHVVVGWNENGEVIKEVRCIPPYCEQCQEEQKKQDEEDAIADNLNAKLYLQTYNVLMSNKSYVADEFKTKTFDDFNAVTSEEKRFLEFAKGQVQKYLDGMRGNTLITGGTGIGKTLLSVAIAKGINEGYKTKGEPKSVLFVSLTEMIKQIKEGWNYGKGATLTEFEATELMKSVDYLIIDDLGAKNAVIKPKSDWEQDLLFDVLNNRENTIFNTNLDSDELKIVYNERNYSRILKGLEGNTFKAFTIKDKRYSINQLKNKVKQLK	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad_CDS_0009	shell	direct	high	897	1.0	GCA_000212515.2_00984
GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	genomad	CDS	124091	124264	GCA_000212515.2	AFGR01000002.1	GCA_000212515.2|AFGR01000002.1	GCA_000212515.2_AFGR01000002.1	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162_136	174	1	0.310	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	GCA_000212515.2|AFGR01000002.1	136	10	4833	5006	MTENKDNKLLEMMEKGFVLYSKNGIIKYIEIPDHGSIKLKAQDGQLVYKEVTTGEQC	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad_CDS_0010	cloud	direct	high	174	1.0	GCA_000212515.2_00985
GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	genomad	CDS	124354	124959	GCA_000212515.2	AFGR01000002.1	GCA_000212515.2|AFGR01000002.1	GCA_000212515.2_AFGR01000002.1	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162_137	606	1	0.365	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	GCA_000212515.2|AFGR01000002.1	137	11	5096	5701	MTFTTIKDDIKAFGKKKHGYMTGYIAKQEELHKQLQNGMIGEKYAKDQLEAYKLEGDTYSRDTYNKIHAEIEKQHDLELEALKEKELSVTADDVAELTLLASMKMTKDELLGYFEKYKNKPLAIKKLWSIAEQYPEIAINLELFNAEQALESLILFFKRQLSYCHYSLLINGDKIQAVTTEMVVNSDAPELDRRLDEYLNK	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad_CDS_0011	cloud	direct	high	606	1.0	GCA_000212515.2_00986
GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	genomad	CDS	125003	125155	GCA_000212515.2	AFGR01000002.1	GCA_000212515.2|AFGR01000002.1	GCA_000212515.2_AFGR01000002.1	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162_138	153	1	0.405	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	GCA_000212515.2|AFGR01000002.1	138	12	5745	5897	MAGNENDGLTSKQIKFIDAMLTEPTIDKACQKAGVSRATGHKYLKVAAVD	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad_CDS_0012	shell	direct	high	153	1.0	GCA_000212515.2_00987
GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	genomad	CDS	125167	125418	GCA_000212515.2	AFGR01000002.1	GCA_000212515.2|AFGR01000002.1	GCA_000212515.2_AFGR01000002.1	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162_139	252	1	0.313	11	None	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	GCA_000212515.2|AFGR01000002.1	139	13	5909	6160	MMDKTTQMLYLASSNAVSVLNDIMMDAKINPFIRTQAAKTILEQSYKTHEIFGVVRQIEELRLEIEEVSKGDQRVTRTQGIIK	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad_CDS_0013	shell	direct	high	252	1.0	GCA_000212515.2_00988
GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	genomad	CDS	125360	125737	GCA_000212515.2	AFGR01000002.1	GCA_000212515.2|AFGR01000002.1	GCA_000212515.2_AFGR01000002.1	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162_140	378	1	0.347	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	GCA_000212515.2|AFGR01000002.1	140	14	6102	6479	MRKYLKEIKELQELKELLSSRNTPEVIIVEGNDDLGEFFQVDGELFSDIELLENLKKWREWEVQVIVDDWCNRGLNEYETGILYFPKHEDKMDYIRFNKGLEPLYHALDEPYTTISKSEWLKLLD	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad_CDS_0014	shell	direct	high	378	1.0	GCA_000212515.2_00989
GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	genomad	CDS	125755	126165	GCA_000212515.2	AFGR01000002.1	GCA_000212515.2|AFGR01000002.1	GCA_000212515.2_AFGR01000002.1	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162_141	411	1	0.331	11	AGGAG	GENOMAD.066502.VV	2.126e-68	227	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	GCA_000212515.2|AFGR01000002.1	141	15	6497	6907	MPKKKIERISVIHREKILWLKWYFMRDKEKPKYSVLECKMFDAAKNKDMLAYKKYATIKQITDIRVQTSEDDILTAIKEVYVYNHMNVIGACQRILFVSQSPAYNKLNKWFETYSDLYFSIIPLPNMGAYHELVDS	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad_CDS_0015	shell	direct	high	411	1.0	GCA_000212515.2_00990
GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	genomad	CDS	126656	127162	GCA_000212515.2	AFGR01000002.1	GCA_000212515.2|AFGR01000002.1	GCA_000212515.2_AFGR01000002.1	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162_142	507	-1	0.375	11	None	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad	GCA_000212515.2|AFGR01000002.1	142	16	7398	7904	MNSLGINFYLFLPTHLSTILLRKHGLISKSTSKRYYQVAIPFTRLFCLVLVSIDYINCLSETADKNWHKSDRIFVTNTGKTVHSSILSKSLQRANERLKKPIPKHLSPHIFIHITISILSENKIPLKTITDRVGHPDSEVTNSIYTHVTKNMKDEAINVLDKVMKKIF	GCA_000212515.2|AFGR01000002.1|provirus_119259_127162	GCA_000212515.2|AFGR01000002.1@region_119259_127162@tool_genomad_CDS_0016	persistent	ambiguous	low	8	0.016	GCA_000212515.2_00992