core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000214495.2|AFIJ01000038.1@region_23102_32178@tool_cenote	cenote	CDS	23101	23535	GCA_000214495.2	AFIJ01000038.1	GCA_000214495.2|AFIJ01000038.1	GCA_000214495.2_AFIJ01000038.1	GCA_000214495.2|AFIJ01000038.1	GCA_000214495_2_6	GCA_000214495_2_6@C3	1	435	GCA_000214495_2_6_22	GCA_000214495_2_6_22	+	96055	.	PFAM:PF02319.19	transcriptional-regulator	MATYTHCINFVLTIAQHEVFLTFSETLSKFGITPGQYGVLACLWESQGGITPKEIAGALHVENSTISGVLDRMQKQGLVTRILNPENRRSIHVKATAKGMALKEPLLQEVEQLNQQVLQDLTAQEQVQLFNLLRRIKGVSIDTM*	phrogs_hmm	hypothetical_protein	C3	9077	23101	32178	GCA_000214495.2|AFIJ01000038.1@region_23102_32178@tool_cenote_CDS_0001	persistent	direct	high	434	0.998	GCA_000214495.2_00282
GCA_000214495.2|AFIJ01000038.1@region_23102_32178@tool_cenote	cenote	CDS	23589	24728	GCA_000214495.2	AFIJ01000038.1	GCA_000214495.2|AFIJ01000038.1	GCA_000214495.2_AFIJ01000038.1	GCA_000214495.2|AFIJ01000038.1	GCA_000214495_2_6	GCA_000214495_2_6@C3	489	1628	GCA_000214495_2_6_23	GCA_000214495_2_6_23	-	96055	.	cd22359	Sugar fermentation stimulation protein A and similar proteins. Sugar fermentation stimulation protein A may bind to DNA in a non-specific manner and may act as a regulatory factor involved in the metabolism of sugars such as maltose. However, it contains a well-conserved PDDEXK nuclease active site and may have hydrolytic activity towards an unknown target. The putative catalytic domain belongs to a superfamily of PDDEXK nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI. The N-terminus of SfsA resembles a DNA-binding OB-fold domain.	MQETSEVKVGIFLNRPNRFLCEVEIDGTIECCHLPNPGRMWELLFPRVRMYVRRSGQKNRRTAYDVIGVEREGIPILLDTQYTNEVAARLIQEKKIPAWKDWQVLRREVAVGHSRFDLLLGRGPERFYVEVKSCTLFGRHGAMFPDAVTERGKKHLLTLAAMREEGIRTGILFLVQWDRARWFLPDYHTDPAFASVFFNVAPRLDWQAFSVHWTPTFQMPEPAGPLFYPAQVLDKENHDSGVYLVILQVERSIRIEIGAMGERIFPAGYYVYIGSAKKHLTARLERHKRLRKKMHWHIDYLRQQAKVTATVPIRTSAPLEHSLAAAVQAVSEGSVPGFGCTDCSCRSHLFMFSQNPLQQRDFVQVIEDFRINRLEALIE*	mmseqs_cdd	nonviral_gene	C3	9077	23101	32178	GCA_000214495.2|AFIJ01000038.1@region_23102_32178@tool_cenote_CDS_0002	persistent	direct	high	1139	0.999	GCA_000214495.2_00283
GCA_000214495.2|AFIJ01000038.1@region_23102_32178@tool_cenote	cenote	CDS	25242	25346	GCA_000214495.2	AFIJ01000038.1	GCA_000214495.2|AFIJ01000038.1	GCA_000214495.2_AFIJ01000038.1	GCA_000214495.2|AFIJ01000038.1	GCA_000214495_2_6	GCA_000214495_2_6@C3	2142	2246	GCA_000214495_2_6_24	GCA_000214495_2_6_24	-	96055	.	.	hypothetical protein	MRKEKGEPVCSAGREMFGVAVGGSAFRQGKAAAY*	.	hypothetical_protein	C3	9077	23101	32178	GCA_000214495.2|AFIJ01000038.1@region_23102_32178@tool_cenote_CDS_0003	.	unmatched_CDS	none	0	0	.
GCA_000214495.2|AFIJ01000038.1@region_23102_32178@tool_cenote	cenote	CDS	25562	26203	GCA_000214495.2	AFIJ01000038.1	GCA_000214495.2|AFIJ01000038.1	GCA_000214495.2_AFIJ01000038.1	GCA_000214495.2|AFIJ01000038.1	GCA_000214495_2_6	GCA_000214495_2_6@C3	2462	3103	GCA_000214495_2_6_25	GCA_000214495_2_6_25	-	96055	.	PDB:2XD8_E	Major-Capsid-protein	MAINTLEMATLFQQSLDKQMLVGATSGWMEANATQVKYNGGDTVRMPEISTSGLAKYDRDKGFNQGAVTLKYEDYKLTQDRGRTFHLDAMDVDESNFIAAAGNVMGEFQRVQVVPEVDAYRYSKIAELAKKVEHTTEAEPAKTTILEMLDDEITKIQDVIGENSGLVIVMSTPVRTILNNAKDIQKYFERSHREDGNILYGRKVFTSEQELIR*	hallmark_hmm	common_virus	C3	9077	23101	32178	GCA_000214495.2|AFIJ01000038.1@region_23102_32178@tool_cenote_CDS_0004	persistent	direct	high	641	0.998	GCA_000214495.2_00284
GCA_000214495.2|AFIJ01000038.1@region_23102_32178@tool_cenote	cenote	CDS	26224	26790	GCA_000214495.2	AFIJ01000038.1	GCA_000214495.2|AFIJ01000038.1	GCA_000214495.2_AFIJ01000038.1	GCA_000214495.2|AFIJ01000038.1	GCA_000214495_2_6	GCA_000214495_2_6@C3	3124	3690	GCA_000214495_2_6_26	GCA_000214495_2_6_26	-	96055	.	PFAM:PF06810.10	minor-structural-protein	MTKEELKALGLTDEQVSKITEDYGKNYVSKSQFNEKNEALKNAEKEKGELTKQIEGLKKNNDSNADLKKQIEAMQEAAKAMETEHATQLAQMKLDAAVEHSLTVAKAKNIKAARALLDLKDAKPDEKGEVIGLSDKIKELQKSDAYLFESNDGQKKEVGGVHPGAGSDNNGTAAKLTVQQQFERALGI*	hallmark_hmm	common_virus	C3	9077	23101	32178	GCA_000214495.2|AFIJ01000038.1@region_23102_32178@tool_cenote_CDS_0005	persistent	direct	high	566	0.998	GCA_000214495.2_00285
GCA_000214495.2|AFIJ01000038.1@region_23102_32178@tool_cenote	cenote	CDS	26930	27130	GCA_000214495.2	AFIJ01000038.1	GCA_000214495.2|AFIJ01000038.1	GCA_000214495.2_AFIJ01000038.1	GCA_000214495.2|AFIJ01000038.1	GCA_000214495_2_6	GCA_000214495_2_6@C3	3830	4030	GCA_000214495_2_6_27	GCA_000214495_2_6_27	-	96055	.	.	hypothetical protein	MILQYEFTEKEKIFLKKMNFSFSDEMEDEKAADLVDAIADNIQGLNEDNRNIAEDIITKITTHPDW*	.	hypothetical_protein	C3	9077	23101	32178	GCA_000214495.2|AFIJ01000038.1@region_23102_32178@tool_cenote_CDS_0006	cloud	direct	high	200	0.995	GCA_000214495.2_00286
GCA_000214495.2|AFIJ01000038.1@region_23102_32178@tool_cenote	cenote	CDS	27132	28151	GCA_000214495.2	AFIJ01000038.1	GCA_000214495.2|AFIJ01000038.1	GCA_000214495.2_AFIJ01000038.1	GCA_000214495.2|AFIJ01000038.1	GCA_000214495_2_6	GCA_000214495_2_6@C3	4032	5051	GCA_000214495_2_6_28	GCA_000214495_2_6_28	-	96055	.	PFAM:PF06152.10	minor-capsid-protein	MRLDRSQELYIKMARYVEELAKSQNLNMRNLLSIVYEDSVYKTAYETQKLRGEFSTFREVAKRDIETAISKPWATDGKDFSTRIWENKAQLINTLQTEMTRSFMIGEGAAPLINRIQKRFNVSFSNARRLVETETAYVQEKGMLDTYEALDVEQYQILAVLDMKTSDICRHLDKKVFDKKDAKPGITAPPFHCYCRSTTTPYIDGITDGTGDTRAARDPVTGKTVFVESDLSYEEWYNKYVKNTDTGALIGLKTSNGITIAKLSKHQQERADIRNLDLDGIRDALINPLHIGEVVVKENGNSQRFIGETTTVNINPDTGVVITSWPTGKSRLKKYKKGK*	hallmark_hmm	common_virus	C3	9077	23101	32178	GCA_000214495.2|AFIJ01000038.1@region_23102_32178@tool_cenote_CDS_0007	cloud	direct	high	1019	0.999	GCA_000214495.2_00287
GCA_000214495.2|AFIJ01000038.1@region_23102_32178@tool_cenote	cenote	CDS	28176	28601	GCA_000214495.2	AFIJ01000038.1	GCA_000214495.2|AFIJ01000038.1	GCA_000214495.2_AFIJ01000038.1	GCA_000214495.2|AFIJ01000038.1	GCA_000214495_2_6	GCA_000214495_2_6@C3	5076	5501	GCA_000214495_2_6_29	GCA_000214495_2_6_29	-	96055	.	PDB:4U7B_B	Mos-transposase	MLKIVKEKSTYETGKYLMELEEKMGFPIRMIQVDNGYEFVNDDDRTAKDSAFEKIAKVLHMELRRTGPYSPWQNGNVERSHREDVKILYGRKVVTSEQELIRQAAKHESGYNKTAKTGLTFKNLNQVVSEYFSTCNLCVDN*	common_virus_hmm	common_virus	C3	9077	23101	32178	GCA_000214495.2|AFIJ01000038.1@region_23102_32178@tool_cenote_CDS_0008	persistent	direct	high	425	0.998	GCA_000214495.2_00288
GCA_000214495.2|AFIJ01000038.1@region_23102_32178@tool_cenote	cenote	CDS	28730	31183	GCA_000214495.2	AFIJ01000038.1	GCA_000214495.2|AFIJ01000038.1	GCA_000214495.2_AFIJ01000038.1	GCA_000214495.2|AFIJ01000038.1	GCA_000214495_2_6	GCA_000214495_2_6@C3	5630	8083	GCA_000214495_2_6_30	GCA_000214495_2_6_30	-	96055	.	PDB:4FM9_A	DNA-topoisomerase-2-alpha	MDEQHSDKVLPVCLENEMQTSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPNKPYKKSARIVGEVLGKYHPHGDSSVYYATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAMRYTEVRMAKITGEMLADIDKETVDFMPNYDGSLQEPTVLPSKIPNLLVNGSAGIAVGMATNIPPHNLGEVVDGCVTLIDKPDASLEEIMTKIKGPDFPTGAKIMGREGILKAYATGRGSVKMRSCVAVEPMTKGKNRIVVTEIPYQVNKARVIESIAELTRNREIDGITALRDESDRKGLRIVIELRADVNPDIILNKLYKHTQLQETFGIIMLALVDGHPRVLSLLQVLQYYLGHQRQVITRRCRFELDKALARAHILEGLLIALDHIDEVIRTIRESATDETAKTSLMTAFGLTDKQAVAILDMRLRRLTGLEREKIEEEYRELEERIAYLRSVLADDRKVMEIVKTELLEAKKRFGDVRRTQLAADTSELGVEDMIPDERMVLTLTRRGYMKRINANVYHTQNKGGRGIKGMGTKDEDAVNHLLYTSALHTVLFFTNFGRVYRLKAYEIPEANSRNSKGIAAINILPLSTGEKVNALIDLDQADPSMNLFMATENGLVKKTELAEFKNVRRNGLIAISLIEGDHLAKVRLTNGKQRIILATKLGMAICFNESDVRPMGRNTRGVRGISLAPGDRVIGADVLAPDCQVLTVSEEGFGKRNNMDAYKIQLRGGKGAKNFKITPKTGVIVGVEVVREDQELMLITTNGIVIRTDIESIGIKKGRNTSGVKIQKLEGDDKVAALDTITVDGEEREAE*	common_virus_hmm	common_virus	C3	9077	23101	32178	GCA_000214495.2|AFIJ01000038.1@region_23102_32178@tool_cenote_CDS_0009	persistent	direct	high	2453	1.0	GCA_000214495.2_00289
GCA_000214495.2|AFIJ01000038.1@region_23102_32178@tool_cenote	cenote	CDS	31455	32177	GCA_000214495.2	AFIJ01000038.1	GCA_000214495.2|AFIJ01000038.1	GCA_000214495.2_AFIJ01000038.1	GCA_000214495.2|AFIJ01000038.1	GCA_000214495_2_6	GCA_000214495_2_6@C3	8355	9077	GCA_000214495_2_6_31	GCA_000214495_2_6_31	+	96055	.	cd08563	Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.	MLNFAHRGFSGKYPENTMLAFQKALESGADGIELDVQLTRDNRLVIIHDERVDRTTDGTGFVRDFTLSDIQQLNAAGTYADTLPPVSIPTFREYCHWVKQTDLLTNIELKNGVYDYPGIEAEVWQVLQEFQLQDQVIISSFNHASILRMKQLAPQLTYGLLTESWLINPGKYTRDLGVACYHPLYGSLTDDTVAEIKRQGIRINTFTVNDEEAVRKLLQQGIDCVITNYPDMVRRIIQGG*	mmseqs_cdd	nonviral_gene	C3	9077	23101	32178	GCA_000214495.2|AFIJ01000038.1@region_23102_32178@tool_cenote_CDS_0010	persistent	direct	high	722	0.999	GCA_000214495.2_00290