core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1031888	1032832	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	1	945	GCA_000221165_2_2_1008	GCA_000221165_2_2_1008	-	1748508	.	COG5263	Glucan-binding domain (YG repeat)  [Carbohydrate transport and metabolism]. 	MDIDTSRLRTNLPQVGVQPYRQVHAHSTGNRNSTAQNEADYHYRKDPELGFFSHVVGNGRVMQVGPVNNGSWDVGGGWNAESYAAVELIESHGSKEEFMRDYKLYVELLRNLADEADLPKTLDTGSLAGIKTHEYCTNNQPNNHSDHVDPYPYLAKWGISREQFKKDIEGGLSEAGWKRNETGWWWEESDGSYLTDRWKQINNEWFYFNERGYCLINRWFNDGKDWFYLDKRGAMVTGWMYINNRWYYFKSDGRMAKGWVKYRETWYYLDEKDGDMKSDQFVKYGNGWYYLKSDGSMADKPEFTVEPDGLITTK*	mmseqs_cdd	nonviral_gene	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0001	cloud	indirect	.	.	.	GCA_009496385.1_00922
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1032835	1033167	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	948	1280	GCA_000221165_2_2_1009	GCA_000221165_2_2_1009	-	1748508	.	PFAM:PF09682.9	Phage-holin	MQQFNEIIIAFATGFLAVATGSIVKAVKDYLLRKGGEKAVKIVEILAKNAVNAVEQVASETGYKGEEKLEQARTKIRAELTKYNISMTDCDLDTFVESAVKQMNDAWKGE*	common_virus_hmm	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0002	cloud	indirect	.	.	.	GCA_027685845.1_01526
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1033171	1033470	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	1284	1583	GCA_000221165_2_2_1010	GCA_000221165_2_2_1010	-	1748508	.	PFAM:PF10960.7	involved-in-bacteriocin-production-or-immunity	MPIEEAEKIAQSQVAWAILFILLFFIIIRYLIKTSDKREKKIMDLHEQSKADSNRREERLMTHLEKTTTELTIITHTVGDIQKEMVRMNDRMEEIEKGE*	phrogs_hmm	hypothetical_protein	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0003	cloud	indirect	.	.	.	GCA_019930045.1_02095
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1033482	1034069	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	1595	2182	GCA_000221165_2_2_1011	GCA_000221165_2_2_1011	-	1748508	.	PF07104.11	Protein of unknown function (DUF1366)	MAINNYELASKPYTRGLGDKTVTVVEVKLADGSRYSTNMRELAGDRTGDSDDVLIKAVLDIVKTEIDPSSAIVKAQEQLKQAKEDLTANKEYLESVSAITEVLIALAISQNGGMPTNTYSKVAQFIKPLVKDRRYANGDIVSMPYPYDTNPKWPKDTLTILKFQMQEAEGYTFKEQPLTEMLQKGILTVVMPRIE*	hhsuite_tools	hypothetical_protein	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0004	cloud	indirect	.	.	.	GCA_023109315.1_01745
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1034059	1034268	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	2172	2381	GCA_000221165_2_2_1012	GCA_000221165_2_2_1012	-	1748508	.	.	hypothetical protein	MNEQDKQISSLTIKSLGEKVGNEATQSATLEALYTVTAMELEQMKRIIESDEELKVKFEEAKGRMTNGN*	.	hypothetical_protein	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0005	cloud	indirect	.	.	.	GCA_001553685.1_00125
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1034265	1038209	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	2378	6322	GCA_000221165_2_2_1013	GCA_000221165_2_2_1013	-	1748508	.	PDB:3GUD_A	Neck-appendage-protein	MIYLTNGNTPLNAAYEDKIVQEDGSTYQLTFRFPTSDSLWEKLKEETFLTADDLHGEQDFVIFEVEKKHGYIQVYANQVFTLLNNYVVNPISLDRATGSTALSRFAGSITRSHPFSFFSDIGERHTFNIDAKNAMEAFVKDKHSILGQWGGDLVRHSYQVRLLKNGGSENESLFMYKKNLSSYQHKTSTKSLKTRITFKTTVKGEGEKAPDRKFSVVVDSPLINKYSQIYEDVIEVNDEDVKDEASLRKYGEQYFKTSLCDMMEDSLELEVVGQSDVPVQMYDIVSLFHEVYNLDVRKKITKYTYSPMANKLLSIGFGQFKSGLSNMVSNAVSDAVKNEAQQLQDDFERQLARELKNADLAFDRQKEELVNQFTDGLNAAKARAEEVKRELSDTIDQRFNSFNNGPLQEVKRRTEEALKNSGASSLLAQEAKRIGLDSVARLEAFKSQATSAQTALSGDLDVLKRTVANEVNQASEYRKTTTEALSRMTGQMNGFATKSEVKQDIDGLTQTFAKMMVGGRNYYRNSDKLVTRPRFIQFDVYPYLDADNVGQDWTFSFDLKINETGTVRPLHFYHYQRNGLAIGIDTFFNPSKEWQRYSFTGKVVQGGSNPAYAKGAMAIYDHAGDNNISIQNIKFERGTVATPWSPAPEDGEDELLAVKTEFKKTADGLSAKIVSIESYVAQDGQRQEALRRYSREESAKQATSLRELVTRDFVGKATHQEDVRAIERRFETITNPQNGSIATQIANYKTAVDGRFSDITSLIAGKANQTDFQRVKETSQLYERILGNSENGIADKVARMAMTNQLFQVEVGKAVQKGRNYYRDSEKVQTKTRFFSFPLHPYLSQENVGETWTLSFDLKINEGGEIRPLHFYHYQTNRFGIKASADITPSKDWQRFTFTGPVIFPNDDPRYARGEMALYDFGGNNNYSVRRIKFERGTVATPWSPAPEDNDEAIRTVQSQLAGSWGVHNKNSVNEIIAGFNLAGRNAGIKAETIRLEGRTLLDELTAIQGYFKRLFVGEGAFAKLNAEIIASKTITADKLVMDMAMARMFVSSDIFTDTLAAKEAFINKLRSVVVTATLLEGYKGRIGGFQIGTHEKDSSVYWITGENQFSVGMSNGTGQWSQTALWVNWGNNWGYPGDYAWYVKNNGKMYCYNTAEFWNTPVIHGDLRVTGHIFYNNENSGKSGYWIHSSKYSNFEPSNNYLYLYYSGSGYDWIPMNKEISDRRYKHNIEASTVSGIDVIENLKTYSYRKEYDGKIEDISCGIMAQDVQKYAPEAFFENPDGAYSYNTFALVPYLIKAIQELNQKIEKLEKTA*	hallmark_hmm	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0006	cloud	indirect	.	.	.	GCA_007475365.1_01681
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1038206	1038901	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	6319	7014	GCA_000221165_2_2_1014	GCA_000221165_2_2_1014	-	1748508	.	PDB:2X8K_A	Distal-Tail-Protein	MDYMIINGFNTSTLPGCVVTDFGKVEAAKPRGEVANLHGVNGSYRVLDGSFDSYERTFILHVKKMVEISSILDKFQSNDNVLEFSYQLGSLFYANFVTANFEPFGNHAWKLEIKLDMQPFRYQKNVDPVVLTASGTIINPGTIYSEPIIEIEGDGDISLTIGRKTMYLAIKTKATIDCRQGKQNIYNATGAVQNTLRKRGGFLEIPTGKVGISFTGNVRKITIRPNWRYKI*	hallmark_hmm	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0007	cloud	indirect	.	.	.	GCA_000018965.1_00073
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1038901	1041837	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	7014	9950	GCA_000221165_2_2_1015	GCA_000221165_2_2_1015	-	1748508	.	UniProtKB:R2PRN9_9ENTE	tail-tape-measure-protein-	MATEIAQAYVQLIPSARGITGKIQSILDPEASAAGQSAGQSLGSSLVSVMTKVIAAAGIGKAFSAAISEGAALQQSLGGIETLFKGSADKVKGYANEAYKTTGLSANAYMENVTGFSASLLQSLGGDTNKAAETANMAMIDMSDNANKMGTSMESIQMAYQGFAKQNYTMLDNLKLGYGGTKQEMERLLNDAQKLTGVKYDINNLSDVYNAIHAIQENLDITGTTAKEAASTFSGSFESMKAAAQNVLGKLALGENILPSLHALLKTTSTFLFDNFLPMVGNIFSGLGLVLTEGISQIASQLFGDAFGSAVFDQLSRVTGIFDTFFDMIFGSLSKQDNIDILNTLGFSEEAATQIVNIADNIRVTFENIGVVAGNVASIVVDFVGDLLGIKDGEQGVNLLGFAFEALTGILKEASGILKEVTKFFKENQLAADLLKSAVVALGVGLPVIKFTKFMQGLGGLPGILTIAKTAISGFATSAMAAISSIPLVGWIAAAVAALAWFFTQTETGQQIWSSFVDWIKQAWQGIADFFVGIWSGISEGASTLWDGVVTTWNAYIESLKAMWNAVVTFFSDLWVSIQEAASVAWTAITTVVMAIVQPFIDGFMNVWNNISDGLTQIWEGIKMIFQGAWEFIKSIFLGAILIIIDLVTGNFNQLGADLSLIWEGIQNGISLIWEGIKTFFSGIVDAIVGYGIAVFENFSSVLSAIWEFIKSAASATWEWIKSTVTSLITGLVQGAQSIWDGFMNFLSSLWEGIKSTASNAWSSLASSVLNIINGLISGAQNAWNSMSNAVSNLISNVTGFFNQLWNIDLYGAGQAILQGFLNGLQSMWSSVTDFVGGIAGWIRDHKGPIEYDRKLLIPAGNAIMGSLDHGLKDGFKDVKKTVGGMAGEISDVFSGDNLDLNSSASVTKSLEAQLAMPSAQFEAHENKTVSEIAILRASMEKILTAILEKSSDVYLDNDIISLKTYEQHGAIYAREGI*	hallmark_hmm	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0008	cloud	indirect	.	.	.	GCA_001560895.1_00063
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1041837	1042217	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	9950	10330	GCA_000221165_2_2_1016	GCA_000221165_2_2_1016	-	1748508	.	pfam17318	Family of unknown function (DUF5361). This is a family of unknown function found in Bacteria.	MIQTDEDALICDLAETYGIFDYRQLPADQVAVFAFGLRDNSRIKLAMTGSKVPFETFLLAGVLDRLSALVWFKTTDGQKGINKPLMVAEELTGKTKAKESKEMIFDSGEDFEEYRQQILEKIGGED*	mmseqs_cdd	nonviral_gene	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0009	shell	indirect	.	.	.	GCA_003598195.1_00822
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1042232	1042543	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	10345	10656	GCA_000221165_2_2_1017	GCA_000221165_2_2_1017	-	1748508	.	.	hypothetical protein	MSRRNRKKKNNGAVPQIKTIRGVTSTGFAFEITKERLENYELLEAIAEVDTNPAVLPKVVQLMLGNKSEDLKNHVRTADGIVPLDKMGAEISEIFSSQNQLKK*	.	hypothetical_protein	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0010	shell	indirect	.	.	.	GCA_015558365.1_00097
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1042546	1043097	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	10659	11210	GCA_000221165_2_2_1018	GCA_000221165_2_2_1018	-	1748508	.	UniProtKB:F8S0S2_9CAUD	tail-protein-	MGKEANVTTAKPKIGGAVYSAPLGTALPTDATTKLDEAFEALGYISEDGMTNSNSPESENIKAWGGVVVSSVQKEKTDTFKYMLIEALNLHVLKEVYGPDNVSGDLSSGITIKANSKELPHHCLVIETVLKGGVLKRIVIPSGKVTSIDEITYNDGSVLGYGTTVTAFPNAADDTHYEYIKGA*	hallmark_hmm	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0011	cloud	indirect	.	.	.	GCA_007672555.1_01958
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1043112	1043447	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	11225	11560	GCA_000221165_2_2_1019	GCA_000221165_2_2_1019	-	1748508	.	PDB:2LFP_A	tail-completion-protein	MIEIIIKKYLDGHLDVPSFFEHEAEVPDSFVIIQKTGGRERNHSGSATFAFQSYGPTMQKAAELNVKVKSAVKGLIELDSICGVHLNSDYNFTDTETKQYRYQAVFDINFF*	hallmark_hmm	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0012	cloud	indirect	.	.	.	GCA_000159095.1_00796
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1043448	1043684	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	11561	11797	GCA_000221165_2_2_1020	GCA_000221165_2_2_1020	-	1748508	.	Uniprot:A0A0C5ADH8_9CAUD	type-I-neck-protein	MSNFKVKLIGAGVGALLKSKEIQDILNKEATAIKKRCGPGYEQDSHVGKTRANAMIYPATRKAKRDNLKNNTLLKAVR*	hallmark_hmm	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0013	cloud	indirect	.	.	.	GCA_910576065.1_01463
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1043677	1044015	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	11790	12128	GCA_000221165_2_2_1021	GCA_000221165_2_2_1021	-	1748508	.	PFAM:PF10665.8	Minor-capsid-protein	MGRIKGITVTLIGKTKTGKDDFGHPIYENTEIQVDNVLVVPASTEDVTNQLNLTGKKAAYTLGIPKGDQNEWKDREVRFFGRKWRTIGIPLEGIEAMMPLEWNKKVMVEVYE*	hallmark_hmm	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0014	cloud	indirect	.	.	.	GCA_016648855.1_00664
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1044002	1044397	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	12115	12510	GCA_000221165_2_2_1022	GCA_000221165_2_2_1022	-	1748508	.	PFAM:PF09355.9	head-to-tail-adaptor	MENFATVEDLKKLWRALKFDEEKRSEALLEVVSHSLRVEAKKVGKDLDGLVATDPSFAMVVKSVTVDVVARTLMTSTDQEPMTQVAESALGYSFSGSYLVPGGGLFIKDSELKRLGLKKQRYGVIDIYGTD*	hallmark_hmm	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0015	cloud	indirect	.	.	.	GCA_021595565.1_00963
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1044418	1044639	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	12531	12752	GCA_000221165_2_2_1023	GCA_000221165_2_2_1023	-	1748508	.	PFAM:PF08198.10	Arc-like-repressor	MAEYVNQKTGATINTNTEISGGDWVPIAAYKPLDSLTNAALKEILDEKGITYDSRATKPELISLIEQADTEAQ*	phrogs_hmm	hypothetical_protein	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0016	cloud	indirect	.	.	.	GCA_002096855.1_01073
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1044642	1045544	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	12755	13657	GCA_000221165_2_2_1024	GCA_000221165_2_2_1024	-	1748508	.	PDB:3JB5_B	Major-Capsid-protein	MSEAQLAKGNLFDPELVTKVINKVKGHSSIAKLSPQKPIPFNGQREFIFDFDSDIDIVAENGKKTHGGVSLEPVTIVPLKVEYGARVSDEFLHASEEAKVDMLTDFVEGFSKKLARGLDIMSIHGINPRTKQASTIIGDNCFDKKVTQTVTFKETNPDESMEDAVGMIDGSERDITGAILDPIFTTALSKMKNAEGGKLYPELAWGGVPDAINGLAVDKNRTVSYSQTDPKNTAIVGDFETMFKWGYAKEVPMEIIKYGDPDNSGRDLKGYNQIYIRCEAYIGWGIMDAASFARIVKTGG*	hallmark_hmm	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0017	cloud	indirect	.	.	.	GCA_000147095.1_00086
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1045556	1046029	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	13669	14142	GCA_000221165_2_2_1025	GCA_000221165_2_2_1025	-	1748508	.	PDB:6B0X_d	Major-Capsid-protein	MRMSEFKPITTQEEFDNAIKERLSREKSKHSDYDQLKSRVTELEKENVGLKSTIEANRQSKEDADKQLEEMQNQISNYETASLRTRIALQHGLPYDLADRLQGTDEASFKADAERLAGFMKPVSKVAPIKSTEPIIPKEDDDRAMVRNLVQSLNIED*	hallmark_hmm	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0018	cloud	indirect	.	.	.	GCA_003943435.1_01242
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1046104	1047516	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	14217	15629	GCA_000221165_2_2_1026	GCA_000221165_2_2_1026	-	1748508	.	PFAM:PF03354.14	Large-Terminase	MARKKLGNQNPTQSVILKYVKKNSKAKEAIELYERTGLSCYAWQKNLLLPMMAVDKSGLWVHQKFGYSIPRRNGKSEILYILEIWGLHKGLNILHTAHRISTSHSSFEKVKRYLEKMGYVDGEDFNSIRAKGQERIELYSTGGVIQFRTRTSNGGLGEGFDMLIIDEAQEYTTEQESALKYTVTDSENPITIMCGTPPTPVSSGTVFTKYRETCLFGKGKYSGWAEWSVSDEKEIDDVEAWYNSNPSMGYHLNERKIEAELGEDKLDHNIQRLGFWPTYNQKSAISETEWNELKVDDVPELSGKLSVGIKYGQDGTNVALSIAARTKDGRYFIETVDCQSVRNGNEWMVAFLRQSDVAQIVIDGASGQKILDEELKDYRMKNVILPTVKEIIVANALWEQGIYQKTICHAGQPSLSKVATNCDKRNIGSNGGFGYRSHFDDMDISLMDSALLAHWACATTKPKKKQKISY*	hallmark_hmm	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0019	cloud	indirect	.	.	.	GCA_003454775.1_01559
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1047621	1047833	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	15734	15946	GCA_000221165_2_2_1027	GCA_000221165_2_2_1027	-	1748508	.	.	hypothetical protein	MTKDEIKKYLDTDLVFNHNDRGACFLSSICVVGYDYEGQQFDTIDEAMEAKVFDGKSLVDIWDEVLPQIS*	.	hypothetical_protein	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0020	cloud	indirect	.	.	.	GCA_000162495.1_01805
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1047830	1048909	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	15943	17022	GCA_000221165_2_2_1028	GCA_000221165_2_2_1028	-	1748508	.	PFAM:PF06152.10	minor-head-protein	MENDVLPGILKEVQERFERDFGKSEIVRNAFATLKAKKATYKTANEFAIEIGDILSKALGASLSADKLPDGKMYYNIAQRLLTDVLGRNHELVSGYASDVQKNLNDEAKIGLKVQVPELNQDRIAGIVNRFSSEDNFEDVSWLLGEPIVNFTQSIIDDTIRKNAEFHAEVGLSPKIVRTTVGNCCKWCQKLAGSYVYPNVPHDVYRRHQNCRCTVNYKTSDGKRQNVWNKRIVKPANSGIIEMRKNLNLKVNYDTSRYPHNADGTVKVSRTVERKIPADVSPFEVIDVVNKDGVVSRTFIDEYGRRGMRIDTSDHKQPKYHPMGAHKHIMEYDESGNYLTDGKPIVLSAKDRKENKDIL*	phrogs_hmm	hypothetical_protein	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0021	cloud	indirect	.	.	.	GCA_003182075.1_00959
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1048899	1050167	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	17012	18280	GCA_000221165_2_2_1029	GCA_000221165_2_2_1029	-	1748508	.	PDB:2JES_G	Portal-Protein	MELRGIDYLRRKLNLYRSRVNLRYKHYAMQYYEAPTGITIPAHVRVKYQAVLGWAAKGVDSLADRLIFREFANDDFNVTEIFNRNNPDIFFDSAILAALIGSCSFVYISKGEDDEVRLQVIESSNATGVIDPIIGLLVEGYAVLARDDYNRPTLEAYFEPNATHFIPKDGEPYSVTNETGIPLLVPVIHRPDAVRPFGRSRITRAGMYHQKYAKRTLERADITAEFYSWPQKYIVGLDPDAEQLETYKATVSSLLTISASDSGEKPSIGQFTTASMSPFTEQLRTAAAGFAGEMGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYVAACLRDEFRYARSQFVRTTVKWEPLFEADANTMTMIGDGVVKLNQALPGYINAETIRDLTGIAGDMSARPVISEGGSNGE*	hallmark_hmm	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0022	shell	indirect	.	.	.	GCA_015558365.1_00085
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1050311	1050556	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	18424	18669	GCA_000221165_2_2_1030	GCA_000221165_2_2_1030	-	1748508	.	.	hypothetical protein	MLFQSIAMVIRQTFVTYSLPIGNAIDRSLTSFTLIINQQVVLLLVTGTCHNQEIGQSTELEEAKKEKLYYFLKMSKIILNT*	.	hypothetical_protein	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0023	infer_flexible	indirect	.	.	.	no_good_uniDB_hits
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1050934	1051515	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	19047	19628	GCA_000221165_2_2_1031	GCA_000221165_2_2_1031	-	1748508	.	CDD:cd01192	site-specific-tyrosine-recombinase	MKKVDPIREVDDIERMKDYLRSKSERNYILIMCGLYSGLRISDIIPLQVKHVLGDHIDIYEKKTRKRKRFPINDQLRKALDAYIIENDLKSYDFLFPSRKKKRSKSGNMPGARIHHISREAAYMIFKDAALHVGLKKIGTHSMRKTFGYHFYKREGNLVMLMKIFNHSTQRQTLDYIGYEQDEIDDVMLKFKY*	common_virus_hmm	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0024	persistent	indirect	.	.	.	GCA_000009585.1_00727
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1051627	1052052	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	19740	20165	GCA_000221165_2_2_1032	GCA_000221165_2_2_1032	-	1748508	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MPFFPEINEAKTKENAKKILKGYPRWRRVANDKNGQKVTTTYSFMPRNPGSDTTSQVENLAIRKVDAEMELDAIEQAVSELHDPYYRRIIYEKYMVWHRKKDETIYNELSISESSYYEILDKALLAFAELYRNGEQVAILE*	mmseqs_cdd	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0025	cloud	indirect	.	.	.	GCA_900474885.1_01867
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1052072	1052236	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	20185	20349	GCA_000221165_2_2_1033	GCA_000221165_2_2_1033	-	1748508	.	.	hypothetical protein	MRIETSNGTIINVDKTKNSITVEGVEFGSDCRALVSKHRDGTGTITLVFDGKVI*	.	hypothetical_protein	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0026	cloud	indirect	.	.	.	GCA_026782185.1_01657
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1052226	1052462	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	20339	20575	GCA_000221165_2_2_1034	GCA_000221165_2_2_1034	-	1748508	.	PFAM:PF11753.7	nucelotide-kinase	MKPEIIDNVNNPSHYQGRYGMESIDALRNFMTPEQMKGFYLGNSLKYLLRHQKKNGLEDLKKARKNLDWLIEEMEHEN*	common_virus_hmm	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0027	cloud	indirect	.	.	.	GCA_003992235.1_00194
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1052484	1052855	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	20597	20968	GCA_000221165_2_2_1035	GCA_000221165_2_2_1035	-	1748508	.	.	hypothetical protein	MRPKKYPYLGRRKRQETPSSLFSARPIFNEVPIVEEVKVEFGVEASMGRIYPETIIHLDISGYGNRVHSVHRFPGTLLSVGESIQLKMLFYKRLKNFTTDRFLTFRESDWKFFIRDLVNEFAH*	.	hypothetical_protein	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0028	cloud	indirect	.	.	.	GCA_000221165.2_01233
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1052852	1053265	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	20965	21378	GCA_000221165_2_2_1036	GCA_000221165_2_2_1036	-	1748508	.	pfam09643	YopX protein. YopX is a protein that is largely helical, with three identical chains probably complexing into a twelve-chain structure.	MKQNFRAWYVLAEEMIDEILMISFLRKEIIGKFSNGYISVPLKFEDKRNGEDVILMQSTGLFDKNNKEIFEGDIVRQVRTQPTTENEIITGVVTMFEGAWLIMNDNDQLASYLWSETDENEIIGNIYENKDILEDGK*	mmseqs_cdd	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0029	cloud	indirect	.	.	.	GCA_013276505.1_01581
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1053262	1053855	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	21375	21968	GCA_000221165_2_2_1037	GCA_000221165_2_2_1037	-	1748508	.	pfam07116	Protein of unknown function (DUF1372). This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.	MNEQFVLELQKLLNCFPDSHINRNLEVILIPKTNTYFSLVGCGTKRDIIAKVLMWCTRDIAKVRPYQQQKRNIAFYIDNRDRLRKYLGSNIDVDVVYHCLGNGINKELTHRLKRFIAIWILLSAGLNIWQMGKIAELEEKKLMVIYKADNQGAEIFGKVVEKRRHGKLYTITIRDYGVFVITKEVYDKVRIGDEVRL*	mmseqs_cdd	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0030	cloud	indirect	.	.	.	GCA_007475365.1_01658
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1053868	1054203	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	21981	22316	GCA_000221165_2_2_1038	GCA_000221165_2_2_1038	-	1748508	.	.	hypothetical protein	MENLMFWGMFIACLLISAMTFYIMYSQAMVNRDLERKYNDLKHEIIRVFGWDEYDWANNFRDYARKVDGLIKFKKEIEQLEIIKKALEVKSLEELQKKKEQIENVIKTLEN*	.	hypothetical_protein	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0031	cloud	indirect	.	.	.	GCA_015560905.1_00872
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1054204	1054710	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	22317	22823	GCA_000221165_2_2_1039	GCA_000221165_2_2_1039	-	1748508	.	pfam07852	Protein of unknown function (DUF1642). The sequences making up this family are derived from various hypothetical phage and prophage proteins. The region in question is approximately 140 amino acids long.	MNIQELIEKYKKYENALYDIGAKVACQKILEDLEKLDEPEKIKVPQFVADWYEDVVDEFYIVLERLVLNYRNNTNMPICKWFLETEDALKILINMHQFGYEIEQEKRYRIKLKSNSEEIDYLVNTERNGLRFYSTIYTQRREHTRKELEEAGFGWVFDCPGIEIEEVE*	mmseqs_cdd	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0032	cloud	indirect	.	.	.	GCA_002879575.1_01314
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1054724	1055140	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	22837	23253	GCA_000221165_2_2_1040	GCA_000221165_2_2_1040	-	1748508	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MINNVVLIGRLTRDPELRYTPSNVAVATFNLAVNRNFKGANGEREADFINCIMWRKQAENFANWVKKGALVGITGRIQTRSYENQHSQRVYVTEVVAESFQTLEKKDNSANQASMENQMPSGFGATNPMDISDDDLPF*	common_virus_hmm	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0033	persistent	indirect	.	.	.	GCA_000223295.2_00048
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1055130	1055234	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	23243	23347	GCA_000221165_2_2_1041	GCA_000221165_2_2_1041	-	1748508	.	PFAM:PF00436.24	single-strand-DNA-binding-protein	MIELIKEFGMAILWMFLGYLIGERAARKEKKDDQ*	phrogs_hmm	hypothetical_protein	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0034	cloud	indirect	.	.	.	GCA_026783165.1_01896
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1055239	1055454	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	23352	23567	GCA_000221165_2_2_1042	GCA_000221165_2_2_1042	-	1748508	.	.	hypothetical protein	MLNLYFVYNGHCQFFLGTFDNVDDLIERMEYHQWAFSAITHPRFEKHIGKRTTRFDYGAKDCYYLATFSGG*	.	hypothetical_protein	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0035	shell	indirect	.	.	.	GCA_000018965.1_00042
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1055464	1055925	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	23577	24038	GCA_000221165_2_2_1043	GCA_000221165_2_2_1043	-	1748508	.	PFAM:PF02390.16	DNA-methyltransferase	MKDIRILDACCGSRMFWFDKKEPHTTYMDRREEEFEIHKKKINVKPDIVADFRDMPFDDETFNLVVFDPPHLLWAGQKSFMLAQYGQLDLLTWRLDLQQGFEECFRVLKTGGTLIFKWSDAQVNVKEILELVPHQPLFGQQRGTTHWMAFMKF*	phrogs_hmm	hypothetical_protein	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0036	cloud	indirect	.	.	.	GCA_900573985.1_01639
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1055922	1056116	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	24035	24229	GCA_000221165_2_2_1044	GCA_000221165_2_2_1044	-	1748508	.	.	hypothetical protein	MFILKHGTKEEKPYLMSAKIGVTGIDISFSEERGAIRFVSRAVAMQVAKALRSFGNFYVIQVKR*	.	hypothetical_protein	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0037	cloud	indirect	.	.	.	GCA_000185265.1_00692
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1056116	1056988	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	24229	25101	GCA_000221165_2_2_1045	GCA_000221165_2_2_1045	-	1748508	.	PFAM:PF09681.9	replisome-organiser	MALKNKRYFWIQLAQDFFKSKEMKLLRKIAGGDTHTIIYLKMMLISLEDGGHIYYDGLADNLAEEIALMIDENVEDIKITLLFLESKGLLTRKNDRDYFLEQVPEMVGSETASARRVRKFRENQLALQCNNDVIKRNGDIDIDKEIDIEIEKDRDKNPVELIVEEYQSRIAPLDGTQFEILKEFITLDGMEAKVVLKAIGLAADNGKRNFSYIRAILTNWKNDGVLTIAAVDERERAYKESKISKRPSNQKSNVPEWSQPDYVNKTSDETKKDLEKKKQEMLERLEKGRN*	rep_hall_hmm	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0038	cloud	indirect	.	.	.	GCA_030217155.1_01799
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1056979	1057278	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	25092	25391	GCA_000221165_2_2_1046	GCA_000221165_2_2_1046	-	1748508	.	.	hypothetical protein	MERLIEWLDNLIMTVKELKEKESASRHFITIWENDYKNLLLVKEYLTDYEKLAKDYRDVVSENKLLKVEKMALEGMHIYEDMRMKYRANRRKWGVRLWR*	.	hypothetical_protein	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0039	cloud	indirect	.	.	.	GCA_002096935.1_00055
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1057291	1057605	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	25404	25718	GCA_000221165_2_2_1047	GCA_000221165_2_2_1047	-	1748508	.	.	hypothetical protein	MFEPPILDQLMGVGALLIGFAGACRHIKLQEQRKEEERREEQEFASMIIQGYNHAYERGREAERQEIRKNIRREFKGFTYDNERPEGLRPEPLALPEPKMHIMK*	.	hypothetical_protein	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0040	cloud	indirect	.	.	.	GCA_019929575.1_00151
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1057617	1057907	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	25730	26020	GCA_000221165_2_2_1048	GCA_000221165_2_2_1048	-	1748508	.	.	hypothetical protein	MEGITLQLRLDGESAELFTNQLLAFAEKQVKEQLENDRMPINQQALMKKFGFTHGYIKKLERKGLRFRKQGKDIMYDVNDVYEILELEKQVRKLRA*	.	hypothetical_protein	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0041	cloud	indirect	.	.	.	GCA_009716795.1_00049
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1058265	1058483	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	26378	26596	GCA_000221165_2_2_1049	GCA_000221165_2_2_1049	+	1748508	.	.	hypothetical protein	MSRLRPRPEKNYPSFGWDDLDRTIQSILSNPLFKVCHIDPALYSIPKDEIISECISAGYTVEEREDGILDIS*	.	hypothetical_protein	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0042	cloud	indirect	.	.	.	GCA_007475365.1_01646
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1058438	1058599	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	26551	26712	GCA_000221165_2_2_1050	GCA_000221165_2_2_1050	-	1748508	.	.	hypothetical protein	MMRPKRYPYSGKRKKPIGQSIDLLTRISILESQVINLANHEMSKIPSSRSSTV*	.	hypothetical_protein	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0043	cloud	indirect	.	.	.	GCA_000180515.2_00035
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1058596	1059315	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	26709	27428	GCA_000221165_2_2_1051	GCA_000221165_2_2_1051	-	1748508	.	PFAM:PF03374.13	KilA-protein	MNELINVTLNDNHEPVVSGRQLHEALEVKTEYKKWFSRMTEYGFNENEDFLKVTQKCLTSSTGQNTTDHLIKLDMAKEIAMIQRTERGKQVRQYFIQVEKDFNSPEKIMARALLMADKKVHKLEAQIEADKPKVLFADAVSASHTSILVGDLAKLISQNGYKIGGNRLFVWLRENGYLIKRKGSDWNMPTQRSMEMKLFEIKESTITHPDGHISVSKTVKVTGKGQQYFINKFLNEEAV*	common_virus_hmm	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0044	cloud	indirect	.	.	.	GCA_030180955.1_01092
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1059328	1059564	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	27441	27677	GCA_000221165_2_2_1052	GCA_000221165_2_2_1052	-	1748508	.	pfam05339	Protein of unknown function (DUF739). This family contains several bacteriophage proteins. Some of the proteins in this family have been labeled putative cro repressor proteins.	MSNDYSKLAGKIVEKYGTQYNFAQAMGLSERSISLKMNNRVPWKDFEMAKASELLDINVNQLHEYFFTPKVHVCEQIA*	mmseqs_cdd	nonviral_gene	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0045	cloud	indirect	.	.	.	GCA_030586725.1_00515
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1059734	1060534	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	27847	28647	GCA_000221165_2_2_1053	GCA_000221165_2_2_1053	+	1748508	.	PDB:2FJR_A	Repressor-protein-CI	MRSSNPSERLKQLMSERNLKQVEILEKSLPYQKELGIRMGKSTLSQYVNGVQSPDQHRIYLLSKTLEVSEPWLMGYDVEKKRVPDNERNSTSNEQPEILPIYDKLEKPRQEKVLSYAKDQLEEQESTNIISIFNKSQDDEDYITDYVEGLVAAGHGTFQEDNLHMEVRLRANDVPNEYDTIAKVAGDSMEPLIEDNDLLFIKVTSQVDINSIGIFQVNGKNFVKKLKRDYDGSWYLQSLNSGYEEIHLTENDDIRTIGEVVSVYRN*	common_virus_hmm	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0046	cloud	indirect	.	.	.	GCA_900458965.1_00054
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1060548	1061462	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	28661	29575	GCA_000221165_2_2_1054	GCA_000221165_2_2_1054	+	1748508	.	pfam08797	HIRAN domain. The HIRAN domain (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. The HIRAN domain is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes. It has been predicted that this domain functions as a DNA-binding domain that probably recognizes features associated with damaged DNA or stalled replication forks	MKIGMRTPSLKKSLKARTTSKWKRQAKKAIIPGYGKKGMGWVKNPKKAMYNKIYHKTTFGLSDFLKPSKKRKKKVVTKKQQSILLSNGKKQHTPKEYKEAGLVFMVLGAIFLFLFPPLGFFLFITGFITYIIGRLTAKREKKKKVENYSPQIDTIVFRDDFLLMGTNYHKEEAEAAADFLSKGVHYFGKDNKSLKSYMLETYKPVYKYNKLKTVDVQLLPEPSNPHDKNAIKVLVNNIFVGYLPAVIASQISSYIANPNYRYDAILTGRGGPYKTLNIETERVVTREKELTYYLDLTIWRLAKK*	mmseqs_cdd	nonviral_gene	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0047	cloud	indirect	.	.	.	GCA_003943435.1_01272
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1061624	1062769	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	29737	30882	GCA_000221165_2_2_1055	GCA_000221165_2_2_1055	+	1748508	.	PDB:1XO0_A	Recombinase	MIKKYITKKGETRYLFQTYLGIDPATGKEKRTTRRGFKTIKEAKAAERDLLLDVEENGFSNNEDFQNPTFAEVADLWLDSYKNTVKPTTYQNVKKKLDIMIDLYFTDMKIKQISVAYCQKVAIKLSNRYILYSNYYSVISRIFKYATSLDIIKSNPLDKIIKPKNKPLKGKENYYTKQELTEFLKVSKANFKPVDYTFFHLLAFSGLRTGEAIGLMWSDVDFENKRLSISRTAVVIGKKQTVQDPKTKRSKRVITLDDETLNVLKFWKRQQIKEYFQAGVPYKHDSNYIFTNDIGGWLLAATMKVKLSRFFCKHKDLKKISPHGFRHTHASLLFEAGITAKIISDRLGHNNVQITLDMYTHINDNQRVEVVDQFMDFIRSS*	common_virus_hmm	common_virus	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0048	cloud	indirect	.	.	.	GCA_000420505.1_01613
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1062849	1063733	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	30962	31846	GCA_000221165_2_2_1056	GCA_000221165_2_2_1056	+	1748508	.	pfam06161	Protein of unknown function (DUF975). Family of uncharacterized bacterial proteins.	MYYLWYNERMKYPKIDLKTIRLQTRQFQAENPRLFLVYLLPSILVILSGFLNPLARLQESVLEQSFFSMLAQVLQAYLFPLVVSFMSTIFLAGAAFATLRLLKDPDTELSVKSSLTLFAEERFSQTFLTLLLKRFYLFLWSIPNLVGIYCLFYSNLLARRFVALHPEFPKLDLSSVETEQFLMTFGLYFFVSLILMIVGNLLYVPQHYAYSQVEFLLCDTLDLGHAKPRQILKTSRFLMKGYKFQRFVLDLQLFPWYFLNWITFGIASFSFLPYIQSSQIIFYRTLLALKRRKV*	mmseqs_cdd	nonviral_gene	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0049	persistent	indirect	.	.	.	GCA_000234035.1_01824
GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote	cenote	CDS	1063875	1064744	GCA_000221165.2	AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165.2_AFUO01000001.1	GCA_000221165.2|AFUO01000001.1	GCA_000221165_2_2	GCA_000221165_2_2@C72	31988	32857	GCA_000221165_2_2_1057	GCA_000221165_2_2_1057	-	1748508	.	PF10020.9	Uncharacterized protein conserved in bacteria (DUF2262)	MMNSLKKTFEKIIDDFEKEFCGEVVELLIITLQNVGGAAVLKNGWKLPSVHFVASVNVETKEFSETEGRLEWLVSPEEYEEKGLLYSYSFEPYQIHHIKCQKRPQRQLEPYMAAVANNCYRLLEYIEDGQSDSRLEALIAEYVKPVVIKDSIGEFTLNRAYSWFEGSMDLAGSRVSVMLDANEDASLPPKSFGYLKTFVRDIDRRDSEIRDVIVKEMWETAEDWLASDGDAEVLTEDYFYNSLYLGELSISEAGDLTLYYGDKEDIFAGHAVEVRADIEGNIENVTLVG*	hhsuite_tools	nonviral_gene	C72	32857	1031888	1064745	GCA_000221165.2|AFUO01000001.1@region_1031889_1064745@tool_cenote_CDS_0050	cloud	indirect	.	.	.	GCA_000382805.1_01979