core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	5429	5665	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	1	237	GCA_000223235_2_1_2	GCA_000223235_2_1_2	+	164351	.	NF038388	sigma(X)-activator ComW. The pneumococcal DNA-binding protein ComW, critical for natural transformation, interacts with the sigma factor that is a master regulator for competence, sigma(X).	MLQKFYDRAFVFLKLVEQEYASLGQSCAEWESLHLRFLLYYLIRFKIKSDRDFSLYHFKTAYRLYLDEFLQGGTTLIQ*	mmseqs_cdd	nonviral_gene	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0001	persistent	indirect	.	.	.	GCA_000963255.1_00154
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	5840	7192	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	412	1764	GCA_000223235_2_1_3	GCA_000223235_2_1_3	+	164351	.	PRK01117	adenylosuccinate synthetase; Provisional	MGEIPAMYMRKDELLVAQTKFIMTSVVVVGTQWGDEGKGKITDFLSANAEVIARYQGGDNAGHTIVIDGKKFKLHLIPSGIFFPEKISVIGNGMVVNPKSLVKELSYLHEEGVTTDNLRISDRAHVILPYHIELDRLQEEAKGDNKIGTTIKGIGPAYMDKAARVGIRIADLLDKEIFRERLERNLAEKNRLFEKLYDSTPISVDDIFEEYYEYGQQIKQYVTDTSVILNNALDNGKRVLFEGAQGVMLDIDQGTYPFVTSSNPVAGGVTIGSGVGPSKIDKVVGVCKAYTSRVGDGPFPTELFDEVGDRIREVGHEYGTTTGRPRRVGWFDSVVMRHSRRVSGITNLSLNSIDVLSGLDTVKICVAYDLDGQRIDYYPASLEQLKRCKPIYEELPGWSEDITGVRNLEDLPENARNYVRRVSELVGVRISTFSVGPDREQTNILESVWS*	mmseqs_cdd	nonviral_gene	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0002	persistent	indirect	.	.	.	GCA_000243015.1_02312
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	7434	8582	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	2006	3154	GCA_000223235_2_1_4	GCA_000223235_2_1_4	-	164351	.	PDB:1XO0_A	Recombinase	MKYNKTKYPNIYYYDTAKGKRYYIRRSFYFHGKKKEITKSGLTTLPQARAALTEIEQQIQDQELGINTNLTLDQYWDIYSEKRLSTGRWNDTSYYLNDNLYKNHIKPKFGSAMLKNLDRNEYELFIAEKLQNHTRYTVQTLNSSFMALLNDAVKNGNLLSNRLKGVFIGQSDIPAANKKVTLKEFKTWIAKAEEIMSKQFYALTYLTIFGLRRGEVFGLRPMDITQNDSGRAILHLRDSRSNQTLKGKGGLKTKDSERYVCLDDIGTDLIYYLIAEASKIKRKLGIIKEQHKDYITINEKGGLINPNQLNRNFNLVNEATGLHVTPHMMRHFFTTQSIIAGIPLEQLSQALGHTKVYMTDRYNQVEDELAEATTDLFLSHIR*	common_virus_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0003	cloud	indirect	.	.	.	GCA_018499575.1_01175
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	8754	9173	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	3326	3745	GCA_000223235_2_1_5	GCA_000223235_2_1_5	-	164351	.	PFAM:PF07553.10	superinfection-exclusion	MKKEKASKPFYKKVWFWILVAILAIGGSNALTKQTSSKADEEKASALKTAQELVESKASFSEKTLLWYLTESASHKYSKKAAQYAVENVGDVWVNEALDIAKEERSEGKTDQEILKSLTDKDAQFTEEQALKAIEKLNE*	phrogs_hmm	hypothetical_protein	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0004	shell	indirect	.	.	.	GCA_000159495.1_02743
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	9183	9572	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	3755	4144	GCA_000223235_2_1_6	GCA_000223235_2_1_6	-	164351	.	PDB:3DTE_A	IrrE-protein	MTEKEIISHFQIRIMDFDGDLMPDELGFYEKETNTAFLSSKLNKNERVKVLLHELGHKDHTRSKYQNARLRCENEADRNMIHHLVKDAIESLDDPTEFDYLKFMSYYNLKTVTNEIMVKEEYYNLANII*	common_virus_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0005	cloud	indirect	.	.	.	GCA_902859025.1_00914
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	9585	9809	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	4157	4381	GCA_000223235_2_1_7	GCA_000223235_2_1_7	-	164351	.	PDB:1PRA_A	Repressor-protein	MQEIADYLNVSLDYLLGRTDNPTIAGDSYTWQGKALNVEEMASNVMMFGGRELTDEKKKIIQSIIEGYLKEAGD*	common_virus_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0006	cloud	indirect	.	.	.	GCA_019929305.1_01547
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	9785	9943	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	4357	4515	GCA_000223235_2_1_8	GCA_000223235_2_1_8	-	164351	.	PDB:1PRA_A	Repressor-protein	MFLTFERIKELANKQGLSINALEEKLGYSRNTLYSLKNKKLVRKECKKSLII*	common_virus_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0007	cloud	indirect	.	.	.	GCA_024295645.1_00459
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	10231	10347	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	4803	4919	GCA_000223235_2_1_9	GCA_000223235_2_1_9	+	164351	.	.	hypothetical protein	MANANVKVSYSLICKDLNEAIDAKIKSSPTHLTMKLLR*	.	hypothetical_protein	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0008	cloud	indirect	.	.	.	GCA_000223235.2_00013
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	10399	10929	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	4971	5501	GCA_000223235_2_1_10	GCA_000223235_2_1_10	-	164351	.	.	hypothetical protein	MSPITNENVQIWTLYVTVIIAIIGFILNTISLWQTKKATEDMAKPYINVYVDAYAVKNQQRAYVFKNFGKTPAYIDNIQIDGELDSLNSIHRFGSLIGNMIAPGQKFTSSIEPGYKERITLTITYSDSKKHKYTDKFVLDANLASTMFYTVNESDSSDSPATAIRQSTMALLRDLR*	.	hypothetical_protein	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0009	cloud	indirect	.	.	.	GCA_934201715.1_00257
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	10993	11202	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	5565	5774	GCA_000223235_2_1_11	GCA_000223235_2_1_11	+	164351	.	PFAM:PF10078.8	transcriptional-repressor	MSQQHKKWIQLVKDKLNLEGMTQTHLARACGVKKSTISELLKYGKGSDKLKNRVCDVLRIDETWVELGE*	phrogs_hmm	hypothetical_protein	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0010	cloud	indirect	.	.	.	GCA_001813035.1_00847
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	11206	11436	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	5778	6008	GCA_000223235_2_1_12	GCA_000223235_2_1_12	+	164351	.	.	hypothetical protein	MNEKKQNNDLIKEIIEKHFENMVDDVLAHTETYYEALGAIGSIKGCNIPHMIHLADCLGKAIRKRAMQQKTPNHKN*	.	hypothetical_protein	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0011	cloud	indirect	.	.	.	GCA_013277315.1_00927
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	11455	11583	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	6027	6155	GCA_000223235_2_1_13	GCA_000223235_2_1_13	+	164351	.	.	hypothetical protein	MNELERTALNEILRTVTYIAEKLDEIENVMLTYQEAHKHPKD*	.	hypothetical_protein	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0012	cloud	indirect	.	.	.	GCA_002096175.1_02028
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	11546	12223	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	6118	6795	GCA_000223235_2_1_14	GCA_000223235_2_1_14	-	164351	.	PFAM:PF13643.5	DNA-binding-protein	MYVSIKPTGDFITNFTLSDSCKICKNITCPTVVNETTRSIDNNHYRFCATRYCQQCNHYFVDEVEVTTAVDGYANIDYKYDILDVKPELPSDIPISKELAKLSPIGKEIYTQALKAEQEKLDHIAGIGFRKSLEFFVKDFVISFELEDKDKVAKMPLKQVIDNYIDNQNLKTFATATVYIGNDETHYTKKHSDKDLQDLKKFLHGFLHYMEMQLNLLDAYELLDR*	phrogs_hmm	hypothetical_protein	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0013	cloud	indirect	.	.	.	GCA_001813295.1_00513
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	12278	12994	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	6850	7566	GCA_000223235_2_1_15	GCA_000223235_2_1_15	+	164351	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MNEIFNFHGQEVRTLIIDDEPWFVGKDIADILGYANSRKAIFDHVDDDDKTDRVTIRDAMGRNQNPIIINESGLYSLILSSKLPQAKEFKRWVTSEVLPAIRKQGGFIREDLDEDAFIALFTGQKKLREQQATMLEDIDYLKSEQPIHPSYAQSLLKKRKARVVACLGGIDSPAYADKIFAQSVFRQAEIDFKDHFNISRYDLLPKKFAEAALAYWMTWEPSTNTKMKIMKLNSFDEV*	common_virus_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0014	cloud	indirect	.	.	.	GCA_003428395.1_00480
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	13007	13264	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	7579	7836	GCA_000223235_2_1_16	GCA_000223235_2_1_16	+	164351	.	PFAM:PF09035.9	Excisionase	MDNVLLSLSEWIRSIIKDTITRLVEIEKDSDHYPELMDVSTTCDFLGINYDTFSNNYRYMKGFPKELPGKKWSKRAIKEWLSNQL*	common_virus_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0015	cloud	indirect	.	.	.	GCA_001814215.1_01471
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	13344	13553	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	7916	8125	GCA_000223235_2_1_17	GCA_000223235_2_1_17	+	164351	.	.	hypothetical protein	MNNLQIIAVCTVVSVVLIESLMMNIKLKMAMRAKKIQFQAPQVEKGFIDFKTGRRVDIDPVTRKETFVD*	.	hypothetical_protein	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0016	cloud	indirect	.	.	.	GCA_024399395.1_00768
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	13574	14437	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	8146	9009	GCA_000223235_2_1_18	GCA_000223235_2_1_18	+	164351	.	PFAM:PF09681.9	replisome-organiser	MAVKNKRYYWIQLTQDFFKSKEMKLLRKIAGGDTHTIIYLKMMLISLEDGGCIYYDGLADNLAEEIALMIDENVEDIKITLLFLESKGLLTRKSDRDYFLEQVPEMVGSETASARRVRKFRENQSALQCNNDETKRNGDIEKDIDTDIEKDIDTEIEKDIDENPVALIVEEYQSRIAPLDGTQFELLKEFITLDGMEAKVVLKAIGLAADNGKRNFSYIRAILTNWKNDGALTIAAVDERERAYKESKNSKRPGNQKSNVPEWSQPNYVNTTSEETKEELENGNRKC*	rep_hall_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0017	shell	indirect	.	.	.	GCA_024399395.1_01462
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	14463	14657	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	9035	9229	GCA_000223235_2_1_19	GCA_000223235_2_1_19	+	164351	.	.	hypothetical protein	MFILKHGTKEEKPYLMSAKIGVTGIDISFSEERGAIRFVSRAVAMQVAKALRSFGNFYVIQVKG*	.	hypothetical_protein	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0018	cloud	indirect	.	.	.	GCA_000185265.1_00692
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	14654	14881	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	9226	9453	GCA_000223235_2_1_20	GCA_000223235_2_1_20	+	164351	.	.	hypothetical protein	MINLYFIYNGHRKILIGSFGHIHSAINELKKHQASYSAISHPRFRKSMSGENIRIDYGAVDCYYLITKKTEETNG*	.	hypothetical_protein	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0019	cloud	indirect	.	.	.	GCA_000223255.2_00424
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	14874	15170	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	9446	9742	GCA_000223235_2_1_21	GCA_000223235_2_1_21	+	164351	.	.	hypothetical protein	MARDILTDLAFENLYKAVALPDWKESDEVILVSLANREQIESDERHRLTENCRFFGDRICIFCEQVKKNNYITLHKSKLEKIIKAMGSFKEAEETEEK*	.	hypothetical_protein	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0020	cloud	indirect	.	.	.	GCA_026782895.1_01195
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	15172	15666	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	9744	10238	GCA_000223235_2_1_22	GCA_000223235_2_1_22	+	164351	.	PFAM:PF03819.16	MazG-like-pyrophosphatase	MNTKMNLEEKVQQWFVDRNLHEANPVKQFLKLMEESGELFEGIAKDKSELIYDALGDIQVVMIGLEQQIKNGAQISANQQELELLLMVSSLGNIAQKLYAHVCHNETHMPLIKSDLMFLDSVISSVSLFNGTDAESCLQIAYDAIKDRKGKMIDGVFVKEEDLG*	phrogs_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0021	cloud	indirect	.	.	.	GCA_000215385.2_00928
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	15663	16145	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	10235	10717	GCA_000223235_2_1_23	GCA_000223235_2_1_23	+	164351	.	pfam09643	YopX protein. YopX is a protein that is largely helical, with three identical chains probably complexing into a twelve-chain structure.	MISKFRAWYVLAEEMINEILMISFVRKEIIGKFSDGSTSVPLKFEDKRNGEDVILMQSTGILDKNSQEIFEGDVLKFNDEWDEYCHEGYVDGSVEGINFVEVVRGEACFEFGKTKYPESSLFIRMEDEHLNFAELIKSRDFEFEIIGNIYENPELLEGKE*	mmseqs_cdd	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0022	cloud	indirect	.	.	.	GCA_009496295.1_00841
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	16142	16459	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	10714	11031	GCA_000223235_2_1_24	GCA_000223235_2_1_24	+	164351	.	.	hypothetical protein	MRYFKVLCIVLFASFLIACHQISSGTVVDKYIDEPHTTFIPVSTGKSSVLVSRRTERRYILVVSGYVGNQRIEETFEVTAEEYKYYKIGNTFIKDAVLEIEGDRE*	.	hypothetical_protein	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0023	cloud	indirect	.	.	.	GCA_023110515.1_01387
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	16456	17157	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	11028	11729	GCA_000223235_2_1_25	GCA_000223235_2_1_25	+	164351	.	pfam07852	Protein of unknown function (DUF1642). The sequences making up this family are derived from various hypothetical phage and prophage proteins. The region in question is approximately 140 amino acids long.	MNIQGLIERYEKFKASKKKLTSVDLVLKDLRALDKPEPLPFKLKDVVRRIRGFDPTTQTRWLNDILKELGDDYGSMKYRSGYEQGKLEGAWVGEQLKDADKIRQELNKVLLPNFMDDWIFECQLLKDFSLRDALDSNKIHIYAKESELVKKWLNDKNNQELFARAWLTDYEAEKEPKYKVKLKNTDDYLNQTETGFHFFNNWENNEKFTRKELEYSGFGWVFDCPGVKVEEVK*	mmseqs_cdd	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0024	cloud	indirect	.	.	.	GCA_023109215.1_00986
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	17157	17414	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	11729	11986	GCA_000223235_2_1_26	GCA_000223235_2_1_26	+	164351	.	.	hypothetical protein	MIIKNYKYDYSGGRIFYTIDVDGYEQTMEHTKTEYGSVQRNDIDDFLGTVEEYDFQEAEIIEAFVDFQNDLLLYGIDFELRNEVE*	.	hypothetical_protein	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0025	cloud	indirect	.	.	.	GCA_003603405.1_01789
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	17414	17554	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	11986	12126	GCA_000223235_2_1_27	GCA_000223235_2_1_27	+	164351	.	.	hypothetical protein	MKEVIMATLPNKELNRLIKIELTVQTMIDRGLIDEEQFNEIMAEEE*	.	hypothetical_protein	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0026	cloud	indirect	.	.	.	GCA_026782895.1_01202
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	17567	17827	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	12139	12399	GCA_000223235_2_1_28	GCA_000223235_2_1_28	+	164351	.	pfam07116	Protein of unknown function (DUF1372). This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.	MRRFIVIWILLSAGLNIWQSIHIKKLEAKRPMVIYRSDNQGAEIKGRILQKEKIGDMYTITVQNYGIFVVTQTNYESLKIGDEVRL*	mmseqs_cdd	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0027	cloud	indirect	.	.	.	GCA_001069915.1_01445
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	17827	18078	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	12399	12650	GCA_000223235_2_1_29	GCA_000223235_2_1_29	+	164351	.	.	hypothetical protein	MAKYKKPTYIIIQEAMAERIRFLEDELYERAYKDIEKLEAQNDFLKGLCNNQLEIIMDYEWKQMQEQAEFIKANTRKWRARCS*	.	hypothetical_protein	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0028	cloud	indirect	.	.	.	GCA_024399395.1_00754
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	18069	18407	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	12641	12979	GCA_000223235_2_1_30	GCA_000223235_2_1_30	+	164351	.	COG1396	Transcriptional regulator, contains XRE-family HTH domain [Transcription]. 	MQLRLKELREDLGISVKDMARDTGVSQNTIHLYERGGYPSIKKIEMIAKTYDVNPAWLVGWIDDEMMPGVQVIEKVVYKESPTARLPDYFNNNNEGKIIKWKQSRRYRGGRI*	mmseqs_cdd	nonviral_gene	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0029	cloud	indirect	.	.	.	GCA_024295785.1_01288
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	18404	18805	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	12976	13377	GCA_000223235_2_1_31	GCA_000223235_2_1_31	+	164351	.	PFAM:PF05263.10	transcriptional-regulator	MKKLSDEDLKTLDRELFKFQNIQRTIDLRRLELETRNPDAQSGPIVGISKPTETIAIRIADDPTLKFLEGFKAIINKLLINLVDEDKEIFNLRWRYPQLRWEEIAEQKFMSKATIYRRRRIILEQYAILKGEL*	phrogs_hmm	hypothetical_protein	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0030	cloud	indirect	.	.	.	GCA_902460365.1_01565
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	18997	19431	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	13569	14003	GCA_000223235_2_1_32	GCA_000223235_2_1_32	+	164351	.	CDD:cd01192	site-specific-tyrosine-recombinase	MEFVSPIKDNDDIQAMKDYLREWNEMYYMLFITGLNTGLRVGDILTLKVKDVQGWHIKLRERKTGKQITRRMTKELKKEMRRYVEDKPFHHFLFKSRQGKIKRSLVSEPIKLFMKQLKNLALIMLAHTQCARHSAINITTRQRT*	common_virus_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0031	shell	indirect	.	.	.	GCA_000722845.1_01696
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	20268	20564	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	14840	15136	GCA_000223235_2_1_33	GCA_000223235_2_1_33	+	164351	.	PFAM:PF14239.5	HNH-endonuclease	MYNKPIRPSLKSKKWEKFRDRIMRKHDYLCQESLRYGISVQAEMVHHIFPVSEYPELEFVEWNCLPLTNKKHNTFHDRVNDRVINQGLYWQKKRKKNF*	phrogs_hmm	hypothetical_protein	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0032	cloud	indirect	.	.	.	GCA_000814045.1_01390
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	20721	21113	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	15293	15685	GCA_000223235_2_1_34	GCA_000223235_2_1_34	+	164351	.	PFAM:PF05119.11	Small-Terminase	MAKPITAKSIKSKVVKQMKELGTYRKEFEMIIDIFAGMLYQYQKLAQDYADMGYPVTDTYVNKAGAENERKVPILTAMEILRKDILSYSNQLMMNPKSLGEVVEQEGDSVLTEVLKFKNEIKKKRVTANG*	hallmark_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0033	cloud	indirect	.	.	.	GCA_014890515.1_02652
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	21106	22836	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	15678	17408	GCA_000223235_2_1_35	GCA_000223235_2_1_35	+	164351	.	PFAM:PF03354.14	Large-Terminase	MGNLDKAKEYARHVISHREEHCEENILAAERFIRDLDNPEFEMDEEIVDFVIHFIENTIVHQQGDDMFAVSIRNKPLLLQPWQHFVVVNLFGFYYTGTNERRFKEALIMLARKNGKTSFTAAIALAYQILDTDSGSKCYIVANSVKQAMEAFGFLKFNVERWNDKNIRIKDNNQEHSITANFGNEGSFFIQALANDESRLDSLNGNVIILDEAHTMRNSKKYGLMKKTMSAYRNSMLFVISTAGDIPTGFLANRLKYCQKVLKQLVKDDSLFMFICKADQTTDGDVGDYLDENVLKKANPSWGVTVSLKALREEAEQAMNDPQTRNEFFNKTLNVFTNSMNAYFNPDEFIASDSCYDWTLEELARLPIQWYGGADLSRLHDLTAAALYGVYHDGEKDVDICITHAFFPRVNAQKKANDDGIPLFGWQSDGWLTMSNTPTVLYDDIVKWFIKMREKGFKIAAVGMDRKFGREFLTKMKQARFKMIDQPQLFYLKSEGFRRIEFKVKNKEFYYLHSDAYEYCVSNVRAIEKVDDAVQYEKLDGDGGTARIDLFDASVFACIQALANLGKNQNVMSFFD*	hallmark_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0034	shell	indirect	.	.	.	GCA_000185265.1_00709
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	22856	24058	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	17428	18630	GCA_000223235_2_1_36	GCA_000223235_2_1_36	+	164351	.	PFAM:PF04860.11	Portal-protein	MGLLDRFLKRGKSRGGTNVITHSDFGLYIDGDSYVPLARNPDVIAAVNKIADMVSNMTIHLMENTDKGDIRIKDGLARKIDVNPCDNMTRKTWIFKIVRDLLLFGDGNSVLHVEYDPVNDYILNLRPFAMSEVSFKSDDVGYIVNYRGIDYNPSEIVHFVINPDPDNPFVGTGYRLALRDIVRNLNLATQIKKGFMNGKNVPSLIVKVDSSNGELGTQEGRDKVAKKYLTTSQAGEPWIVPDALLEVEQVKPLSLKDIAINESVEIDKKTVAGLLGVPAFILGVGSFDKEEYNNFVNTTVMSIATTITQTLTRDLLVSNNRYFKLNARSLYSYDITELSSVAEQMTKSMAMRRNEWRDWLGMPPDPDMDELLALENYIPQDRLGDQKKLKGGEEENEQTE*	hallmark_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0035	cloud	indirect	.	.	.	GCA_902159415.1_01063
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	24042	24632	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	18614	19204	GCA_000223235_2_1_37	GCA_000223235_2_1_37	+	164351	.	PFAM:PF04586.16	prohead-serine-protease	MNKRNSYRTAQFKTREESDTGDLILSGYFIKFDEVTELWSGYFEVIKREGVEKAIKGADIRALFNHDDSLVLGRTGNGTVILGVDDIGLYGDIIINKDDPQAVGAYARVQRGDVIGCSFGFIPIKINTEEQADGSYLDTILELEIFEVSPCTFPAYPQTEIAARQKDFESQQRANREALDKRKKEIKEKFNLCTNH*	hallmark_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0036	cloud	indirect	.	.	.	GCA_918292745.1_03055
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	24617	25075	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	19189	19647	GCA_000223235_2_1_38	GCA_000223235_2_1_38	+	164351	.	PFAM:PF06673.10	Major-Capsid-protein	MHKSLILGARMRNKADKVVELEESIKELNKRSELEAKKLDQAGNDEEVSAVEKNLEQIQKELDEKEAEKEQLEKEIEDLKNQVEELNRKAPTYPSKEHRGGQKLEQRDAVLEFIRSRGQKRTGVKTTDVGAIIPKEVLEPQKHLNVRTRCLI*	hallmark_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0037	cloud	indirect	.	.	.	GCA_003942565.1_00985
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	25287	25778	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	19859	20350	GCA_000223235_2_1_39	GCA_000223235_2_1_39	+	164351	.	PFAM:PF06673.10	Major-Capsid-protein	MQEDIQDQDEQTKLAIVADVLKTAKVVNASGYDGLKDILNTKISSVYKKSLVVTDSMFNALDKVKDKDGRYMLQPDITSPTGYSFSGKTIYPVDDTLLGQEEEMKYFIGDVEYFLTLFDRMELSVDWEDNHKFGKNLASYLRFDIKKTDEDAGVFGTYTDVVA*	hallmark_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0038	persistent	indirect	.	.	.	GCA_000615245.1_00603
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	25790	26104	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	20362	20676	GCA_000223235_2_1_40	GCA_000223235_2_1_40	+	164351	.	PFAM:PF08198.10	Arc-like-repressor	MSYKVIRPFKDLADPEKHDYAVGDIFPREGYEPTDSFTNGLLTGSNTAGSIFLEVLGDDEPKKPAPETKEVKEEPAVEQEETVKETVKETVEETAEEPAKEVEE*	phrogs_hmm	hypothetical_protein	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0039	cloud	indirect	.	.	.	GCA_019929305.1_01584
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	26107	26388	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	20679	20960	GCA_000223235_2_1_41	GCA_000223235_2_1_41	+	164351	.	CDD:cd08054	Head-Tail-Connector-Protein	MDEGQLLELLKLKLGISTSLRDKPLEKIISSVITELTDNLGIELVGERADHEMFIVDYAAYRYEGGVDMPRHLQWRLHNLQIASKKEVKNVES*	hallmark_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0040	cloud	indirect	.	.	.	GCA_009663915.1_01661
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	26375	26674	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	20947	21246	GCA_000223235_2_1_42	GCA_000223235_2_1_42	+	164351	.	PFAM:PF10665.8	Minor-capsid-protein	MWNHEIKLISKKVTGKDKLLQPISEDVEVTLLCRKKRVTRSEFYQANQAGLKPSLVVEIRNFEYENQEFAEFEGKQYRILKTYPIDSEILELTLSEVLK*	hallmark_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0041	cloud	indirect	.	.	.	GCA_902385825.1_01650
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	26671	27018	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	21243	21590	GCA_000223235_2_1_43	GCA_000223235_2_1_43	+	164351	.	PFAM:PF04883.11	putative-tail-component	MSNDLADLIAKELAAYSDEVTEEVDNIAEQVADETVDELKETSPKRYGKYRRSWKKKKLANGSFVVFNAVASLTHILENGHLSRNGGRVAGIVHIKPAEEKAIQNFEKRIKEIGK*	hallmark_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0042	cloud	indirect	.	.	.	GCA_947086575.1_00024
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	27015	27338	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	21587	21910	GCA_000223235_2_1_44	GCA_000223235_2_1_44	+	164351	.	PFAM:PF05657.10	tail-completion-protein	MKLSDFAAILEQANLPVTYRAFKTGNAPDLPYLVYYESSPAINAADNTVNHQIKSVTVELAFESKDEDLEERLEELWTTHELFFDVQEETFIETERLYVKSYTVYLY*	hallmark_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0043	shell	indirect	.	.	.	GCA_000960085.1_01762
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	27350	27928	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	21922	22500	GCA_000223235_2_1_45	GCA_000223235_2_1_45	+	164351	.	PFAM:PF04630.11	tail-tube-protein	MTQENKVTFGLENVHIAPIKTLAADGVITYGDIFRFPGAMELTLDTKGETTPIKADNKDYHFMNSNEGYEGKLKIPHIIDEFATKILGEIKDPQTGVMTEKADASLTEFAMMFEFAGDKNKTRYVMYYCFASRPSLGSKTKNGTSTNERELSFKASPRPLDTVVKRSITSADNKDAYDNWFKKVYEPTAVAA*	hallmark_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0044	cloud	indirect	.	.	.	GCA_000019045.1_00785
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	27940	28197	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	22512	22769	GCA_000223235_2_1_46	GCA_000223235_2_1_46	+	164351	.	PFAM:PF12363.7	Tail-assembly-chaperone	MRKIVLVGDQEYELGTNAFAPLAYKQQFGKDFFQEMFLMSKNQSLMNALSKLEGDKELKATDIDTSILEEFDMTFFYRLFGFSLK*	common_virus_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0045	cloud	indirect	.	.	.	GCA_022346625.1_00605
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	28636	31656	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	23208	26228	GCA_000223235_2_1_47	GCA_000223235_2_1_47	+	164351	.	UniProtKB:R4KJ43_9FIRM	Minor-tail-protein	MAGNIKGIKIEIDGDTQPLQKALKNVNKAATDASQELKQIDKALKFDTGNVTLLTQKQEVLQKQVATTKEKLETLRQAQSQVEQQFKNGDIGADQYRAFQREVETTKNVLKGYEGKLANVNQALAENGSATQNNKNQLKELQNEQKQLASENEKVVSSFKLQESQLGANASEADKLALAEKRIGAQSDIVARQIENLEKQLALTKQEYGENSAEANKMETQLNQAKTAYSNLSQEMSNLGNAGKQASGSLSETNNLLKAELLNQFSEKLSDISQKLVDFGKSALEAFRQVDEGMDIIVTKTGAGGKALEDMQKIANDIATELPTDFSTVGNAVGEVNTQFQLTGEALKNASEDVIKFSEINGSDVTNATIQSKQALEAYGLSVENLSAVLDSTTFVAQATGVSVDDLMKKATDGAPQIKLLGLSFEEAVTLIGQLEQHGVDSSAALSGLTKAAGAYAKKGKSMTEGLKETIDSIKNSKSETEALSTAMEIFGAKKAPQMVDAIKRGALSFEELGYTSQVSAGLVSSTYESTLDPIDKFKTAQNSATLAMSELGAAIAEVLAPVFEMLGNIVKGFAEWFGGLPGPIKEFVVVMGTVVAIVGVIVPIFLTLQAAATALEISIGAMITAALPIIGTALAIAAAVAGVVIALKYLWDTNEGFREVVTTVWNAILEVINTVVSEISNFVMSIFGTVVTWWTENQELIRTSAETVWNAIYTVISTILDILGPLLQAGWDNIQLIITTTWEIIKTVVETAINVVLGIIQAVMQIINGDWSGAWETIKGVFSTVWQAIQSIVQTIFSAIQSYISNVLNGISGTVSNIWNGIKDTVSNVLNAISSTVSSVWEGIKSTISGAINGAKDAVSSAIEAIKGLFNFNISWPHIPLPHFYVSGSANPLDWLSQGVPSIGIEWYAKGGIMTKPTIFGMNGNNMMVGGEAGNEAVLPLNDKTLGAIGRGIAQTMGGTSPTINITITGNTVREEADISRIADEVAQRIADELQRKTQLRGGFT*	hallmark_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0046	cloud	indirect	.	.	.	GCA_000223235.2_00050
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	31653	32375	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	26225	26947	GCA_000223235_2_1_48	GCA_000223235_2_1_48	+	164351	.	PDB:2X8K_A	Distal-Tail-Protein	MIKHNELVIDGVRTSSFPFKVIVHDSPSIALGDSKTALLEHGGISGAIIQTNKHREPIKKTYTIYLVKPTEEQMNQFMSLFIREKFWLESERIKTTRLWCYKVNVSDLEEVQPGLYMTKATFTCHPTKYFKGTDTQRLTRSGTLTVQGSALAFPKITIVGQSAAETSFTIAGQVIRLEKLSESLVMVNNPDNPSFKTTTGKPVKWSGDFITVDPAKLKNVGVVLGPGIQSLEIETVWGWA*	hallmark_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0047	cloud	indirect	.	.	.	GCA_023109175.1_01184
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	32376	35792	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	26948	30364	GCA_000223235_2_1_49	GCA_000223235_2_1_49	+	164351	.	PDB:3GS9_A	tail-protein	MLYLLNKDVRTVRWNGEPLHEATSAIVKEIMNGDFTLTVKYPISDSGIYQLIKEDMLIKAPTPVLGAQLFRIKKPVEHNDHLEITAYHISDDVMQRSITPVSVTSQSCGMALSRMVQNTKTVLGDFSFNSDIQDRRTFNTTETETLYSVLLDGKHSIVGTWEGELVRDNFAMTVKKSRGENRGVVITTHKNLKEYQRTKNSQNVVTRIHAKSTFKPEGAEKETTIRVTVDSPLINSYPYINEKEYENNNAKSLEELQKWAQAKFSNEGIDKVSDAIKIEAYELDGQVVHMGDTVNLKSWKHNVDVFKKAVAYEFDALKEEYISLTFDDKAGTGGSRTSGGLSSAADAILGVTGTAQEIALEKALQNADLDFDHQAGLLRQEIADGVELARAKAEEVKRELSDTIDQRFNSFNNGPLQEAKRRAEEALRNAGAGNLLAQEAKRISEQATADITKLKNEVVDGYVGKNTYQEGIRGIERRIEEVKTSTNGQVATQIAEYKQSVDGRFTSLSSQLDGKANLVDFQRVQETSKLYERIIGSNENDISNKVARMALTNQLFQVEVAKYSTVGGPNMLRNSRADNGLKYWTEANGRLSFTAHSYYFNGQKRMFELRPGAVVKSPRFIVKRNTDYTLNILGFDNNSKYFRVYISKRVKGYVSDFQQRLLIFNGQPQWVDGPVFDNMKAVKKSITFNVGEFDECYLQFEYDRNNPNKWGGLFMTELDFYEGTTDRRWQPAPEDATLETDKTLEATQTKMTQLAGSWAVQNINSAGDIISGINLGSNGQNRISGKATHITGETLIDNAVIKSAMIDKLKTANFEAGSVTTTILDAEAVTADKLRVDQAFFNKLVANEAYLSQLFAKQAFINRVKSITIDASQVQSGVLSGDRIYGGTITGSNIYGGTLTGHTKIQLGSYGSFDTTNGGLQINVPRSHNTKDGLGVQFIGSYGRGEDVPYGLFIYKDSDFTTGGYASDSNEFLLTVRGYIKAKGIGWLKTGNGRIDGGTTGTIGLWNSDNVYLSFGGSSNDIYYSYNSTAYSLWSVINKHFSDRRLKDNIVDCKHKALDYIHQFQFKEYDWKKQEDRPQQAHTKIGLIAQEVQEVDPTLVYENGDTLNLDNLRLTNIALKAIQELALENKNLHKDWRT*	hallmark_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0048	cloud	indirect	.	.	.	GCA_000223235.2_00052
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	35796	35996	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	30368	30568	GCA_000223235_2_1_50	GCA_000223235_2_1_50	+	164351	.	.	hypothetical protein	MNAEQLNQALQMTISEMSTSSTNLMITSNLLSIQLNEQRAENQRLQARVDELEALLDEQTKPAEGE*	.	hypothetical_protein	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0049	cloud	indirect	.	.	.	GCA_003598205.1_01143
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	35999	36634	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	30571	31206	GCA_000223235_2_1_51	GCA_000223235_2_1_51	+	164351	.	PF07104.11	Protein of unknown function (DUF1366)	MAINGYNLSTKPYLRISGSNVDTVVEIQLSEGNRYSTNSRSFPGDRTNEPEDVLIQAVLDILKAELDPSSAIVQAQNKLEQAEQQIAHNKSEQDRLSELIKRTQENARLSGKLLHIMVLNSVMSKNIAYGTTYKELVELIPLAEVGKTYLPHDLITIEDPEHVEVNGEGKRILIQLNKEFTYNSEPVSAFVTNGTLEQNGTGVAWKFEGKE*	hhsuite_tools	hypothetical_protein	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0050	cloud	indirect	.	.	.	GCA_001588795.1_01195
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	36644	37063	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	31216	31635	GCA_000223235_2_1_52	GCA_000223235_2_1_52	+	164351	.	PFAM:PF05105.11	Bacteriophage-holin	MKIELFNFFRSLIQTEDGLVLYALGLIVILEIVDFASGTFAAIANPEIEYKSKIGINGLIRKILGVLLLMVLIPMSVLLPEKTGFAFLYSIYLGYLLFTFQSLIENYRKLKGNVTIFQPIIKAFERLSGDKNDKNEGEQ*	common_virus_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0051	cloud	indirect	.	.	.	GCA_024295785.1_00618
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	37063	38073	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	31635	32645	GCA_000223235_2_1_53	GCA_000223235_2_1_53	+	164351	.	COG5263	Glucan-binding domain (YG repeat)  [Carbohydrate transport and metabolism]. 	MDIDTSRLRTDLPQIGEQPYRQIHAHSTGNPNSTAQNEADYHMRRPVDSGFFSHVVGNGRVMQTWYTDMGAYDVGGGWNVEGYGQVELIESHATKEEFMRDYKLYVELLRNLADEAGIPKTLDSDSLAGIKTHQYCTYNQPRNSSDHVDPYPYLAKWGISREQFKKDIEGGLSEAGWRQNASGWWWEESDGSYPTKTWKQIKGEWFYFNERGYCLINRWFNDGKDWFYLDKRGAMVTGWMFLNHRWYFFKSDGRMATGWVKYRETWYFMEEKDGYMLSKQFIKSGDGWYYLKANGELHTDPAFKTEPDGLITVVDKPKEENKTERTFKLDYTNRRQ*	mmseqs_cdd	nonviral_gene	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0052	cloud	indirect	.	.	.	GCA_024295785.1_00616
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	38116	38295	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	32688	32867	GCA_000223235_2_1_54	GCA_000223235_2_1_54	-	164351	.	PFAM:PF04936.11	transcriptional-regulator	MRKIIQELLDSSMSTSAISQGAGVPWTTVSDLRKGKTSMDKMALLTAEKLYEFATADKQ*	phrogs_hmm	hypothetical_protein	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0053	cloud	indirect	.	.	.	GCA_000960025.1_01712
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	38863	39330	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	33435	33902	GCA_000223235_2_1_55	GCA_000223235_2_1_55	+	164351	.	COG0590	tRNA(Arg) A34 adenosine deaminase TadA [Translation, ribosomal structure and biogenesis]. 	MNYTVEEKEVFMREALREAEIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENANLSEESWRLLDCTLFVTIEPCVMCSGAIGLARIPNVVYGAKNQKFGAAGSLYDILTDERLNHRVEVETGILEDDCAAIMQDFFRNRRKK*	mmseqs_cdd	nonviral_gene	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0054	persistent	indirect	.	.	.	GCA_000009045.1_00026
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	39364	39468	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	33936	34040	GCA_000223235_2_1_56	GCA_000223235_2_1_56	+	164351	.	.	hypothetical protein	MNSGATVLREAGQGRNPAALSDVNCVLFFRAFFE*	.	hypothetical_protein	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0055	shell	indirect	.	.	.	GCA_000688775.2_00026
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	39515	39958	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	34087	34530	GCA_000223235_2_1_57	GCA_000223235_2_1_57	+	164351	.	PRK13956	dUTP diphosphatase. 	MKIRGFELVSSFTDENLLPKRETAHAAGYDLKVAVRTVIAPGEIVLVPTGVKAYMQPTEVLYLYDRSSNPRKKGLVLINSVGVIDGDYYGNPGNEGHIFAQMKNITDQEVVLEVGERVVQAVFAPFLIADGDEADGVRTGGFGSTGH*	mmseqs_cdd	nonviral_gene	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0056	cloud	indirect	.	.	.	GCA_003992005.1_00048
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	40002	40499	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	34574	35071	GCA_000223235_2_1_58	GCA_000223235_2_1_58	+	164351	.	pfam00300	Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	MLDKLENPQLYSGFGRDLAPLTGKGRSLAKEVAKTACFGKAEIIISSSVTRALETAHYIAVETGLDLFVEPFFHEWRPDLDGTNSDLTSVLVAHEYYLKHQGGLSEDSPYRYETDLEMRHRFLRTLEKYKNYKTIIIVTHGMLMRQFVPNEKIDFCQVIECELEI*	mmseqs_cdd	nonviral_gene	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0057	shell	indirect	.	.	.	GCA_902488655.1_01735
GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote	cenote	CDS	40681	41874	GCA_000223235.2	AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235.2_AFUU01000005.1	GCA_000223235.2|AFUU01000005.1	GCA_000223235_2_1	GCA_000223235_2_1@C1	35253	36446	GCA_000223235_2_1_59	GCA_000223235_2_1_59	+	164351	.	PDB:3BH0_A	Helicase-ATPase	MKLAEVTSINVNRTKTEMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQRINEAAKLGFTKIYVPKNSLTGITPPKEIEVIGVTTIQEVLKKVFA*	rep_hall_hmm	common_virus	C1	36446	5429	41875	GCA_000223235.2|AFUU01000005.1@region_5430_41875@tool_cenote_CDS_0058	persistent	indirect	.	.	.	GCA_001679005.1_01773