core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000228265.2|AGGZ01000117.1@region_1_5028@tool_cenote	cenote	CDS	157	1374	GCA_000228265.2	AGGZ01000117.1	GCA_000228265.2|AGGZ01000117.1	GCA_000228265.2_AGGZ01000117.1	GCA_000228265.2|AGGZ01000117.1	GCA_000228265_2_66	GCA_000228265_2_66	158	1375	GCA_000228265_2_66_1	GCA_000228265_2_66_1	-	5028	.	PDB:1Z19_B	Integrase	MSITKTKNGTYRLRIYIPEEVKSSLGIDKKVIEKRFKLRSEAKKYELELQNRIDKILSGDSTSLETNGSILFSDFYHNIWWESYKAGQTTSTTKPPSQATIDGTEIVFRKHILPLLGNYSIDFLNQNKQVVLNLLTQKAEEYANFKVIRSYVNSIFDWAEELEYIETNRLSKTISRIKATKKIKLQEAKNDENLYLSQSELQAWFTAFEEDLENDKLLFKDYVLFYTTFFLGDRKSESYALQWKHINLKKQEIQLVRALDKYKNPKSTKGNKKTTFHIPIELADLLRVWKKQQKLELAKFNIIQSDEQYVFTYIDTKGNVNSPLHADYLNNKMKSVERRHKELIHATPHKLRHTGATLAKQSGTSLEAISEALTHSDTFTTKTYVNTSNVVPMAVGEIAYRNLKK*	common_virus_hmm	common_virus	NaN	.	0	5028	GCA_000228265.2|AGGZ01000117.1@region_1_5028@tool_cenote_CDS_0001	cloud	direct	high	1217	0.999	GCA_000228265.2_00181
GCA_000228265.2|AGGZ01000117.1@region_1_5028@tool_cenote	cenote	CDS	1446	1706	GCA_000228265.2	AGGZ01000117.1	GCA_000228265.2|AGGZ01000117.1	GCA_000228265.2_AGGZ01000117.1	GCA_000228265.2|AGGZ01000117.1	GCA_000228265_2_66	GCA_000228265_2_66	1447	1707	GCA_000228265_2_66_2	GCA_000228265_2_66_2	-	5028	.	PFAM:PF07471.11	DNA-packaging-protein	MQVILSDEQIHQLQLLISQLIENEIKNKLDSNNIESPFLNKQQACKYLGIANNTLDSWIKKGLPVIRVGKTVRFDRAELNHWLQNQ*	hallmark_hmm	common_virus	NaN	.	0	5028	GCA_000228265.2|AGGZ01000117.1@region_1_5028@tool_cenote_CDS_0002	cloud	direct	high	260	0.996	GCA_000228265.2_00182
GCA_000228265.2|AGGZ01000117.1@region_1_5028@tool_cenote	cenote	CDS	1766	2143	GCA_000228265.2	AGGZ01000117.1	GCA_000228265.2|AGGZ01000117.1	GCA_000228265.2_AGGZ01000117.1	GCA_000228265.2|AGGZ01000117.1	GCA_000228265_2_66	GCA_000228265_2_66	1767	2144	GCA_000228265_2_66_3	GCA_000228265_2_66_3	-	5028	.	pfam02486	Replication initiation factor. Plasmid replication is initiated by the replication initiation factor (REP). This family represents a probable topoisomerase that makes a sequence-specific single-stranded nick in the plasmid DNA at the origin of replication. Human proteins also belong to this family, including myelin transcription factor 2 and cerebrin-50.	MKAINGHYRFVRPNGRDTNKRRRQPVKWWLDYLQTEIKTRLSIERTKPTLRQSEQWTEKQVSKTLAKLYVAKYEATTLERADQFLQDLLKLGLSKFTNSDEKEIDQYVREHQSSDTWGIQKDDLL*	mmseqs_cdd	common_virus	NaN	.	0	5028	GCA_000228265.2|AGGZ01000117.1@region_1_5028@tool_cenote_CDS_0003	cloud	ambiguous	low	46	0.122	GCA_000228265.2_00183
GCA_000228265.2|AGGZ01000117.1@region_1_5028@tool_cenote	cenote	CDS	2097	2795	GCA_000228265.2	AGGZ01000117.1	GCA_000228265.2|AGGZ01000117.1	GCA_000228265.2_AGGZ01000117.1	GCA_000228265.2|AGGZ01000117.1	GCA_000228265_2_66	GCA_000228265_2_66	2098	2796	GCA_000228265_2_66_4	GCA_000228265_2_66_4	-	5028	.	PFAM:PF02486.18	Replication-initiation-factor	MENSVRIDYFAVTIKDVLPEEVLEEILLIPQDKFALNAWGINKYQCHYACSDIKVYFNQVLDKMGVYLELKGQGCRQYEEFMVDNANNWVALVTRLYRYQVNFTRIDIANDIYDKALSVQTLYAYCKRGLCITRAQYMDYHERSILETGERVGETVTIGARGSQQWCVYNKLMEQKGKGKIVDETNAWVRSELRCWQGKANIIAHQIHLKRPLTAIYFEGNQRTLPFCQTKW*	rep_hall_hmm	common_virus	NaN	.	0	5028	GCA_000228265.2|AGGZ01000117.1@region_1_5028@tool_cenote_CDS_0004	cloud	direct	high	698	0.999	GCA_000228265.2_00183
GCA_000228265.2|AGGZ01000117.1@region_1_5028@tool_cenote	cenote	CDS	2798	3220	GCA_000228265.2	AGGZ01000117.1	GCA_000228265.2|AGGZ01000117.1	GCA_000228265.2_AGGZ01000117.1	GCA_000228265.2|AGGZ01000117.1	GCA_000228265_2_66	GCA_000228265_2_66	2799	3221	GCA_000228265_2_66_5	GCA_000228265_2_66_5	-	5028	.	.	hypothetical protein	MSNLTFTDTTIKLGELNLDKAQFDLPKHLVIISARIRNKYREVNGEQVRTDEPDKLICSVQDANTIKALKELNIPVEELKAITLEIHDNLDKITKLTEDDGLLDKTVELVNPQIRLMWNMARNTWGGVKLVASDLKVIGN*	.	hypothetical_protein	NaN	.	0	5028	GCA_000228265.2|AGGZ01000117.1@region_1_5028@tool_cenote_CDS_0005	cloud	direct	high	422	0.998	GCA_000228265.2_00184
GCA_000228265.2|AGGZ01000117.1@region_1_5028@tool_cenote	cenote	CDS	4048	4671	GCA_000228265.2	AGGZ01000117.1	GCA_000228265.2|AGGZ01000117.1	GCA_000228265.2_AGGZ01000117.1	GCA_000228265.2|AGGZ01000117.1	GCA_000228265_2_66	GCA_000228265_2_66	4049	4672	GCA_000228265_2_66_6	GCA_000228265_2_66_6	+	5028	.	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain  [Transcription]. 	MSTKSKNIFYPESEILMAPLYNYATILRAGELDIKSARLKAGMTQKELGKILGVTKQTIINYEKGTTEPSWERLEDIAKALKIDVDELFPYSELGEKKGDLKWAEHLERLANNFQYARMAEEELLLQSLFDYSKFQREVDQKNYTKEQLNHALELESNNTMSDENKIELIKLKYEKDIQKKTDNLIALYKDQSDKELDVIRFEKTDL*	mmseqs_cdd	nonviral_gene	NaN	.	0	5028	GCA_000228265.2|AGGZ01000117.1@region_1_5028@tool_cenote_CDS_0006	cloud	direct	moderate	575	0.921	GCA_000228265.2_00186